RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy9197
         (154 letters)



>gnl|CDD|111184 pfam02262, Cbl_N, CBL proto-oncogene N-terminal domain 1.  Cbl is
           an adaptor protein that binds EGF receptors (or other
           tyrosine kinases) and SH3 domains, functioning as a
           negative regulator of many signaling pathways. The
           N-terminal domain is evolutionarily conserved, and is
           known to bind to phosphorylated tyrosine residues. Cbl_N
           is comprised of 3 structural domains of which this is
           the first - a four helix bundle.
          Length = 130

 Score =  220 bits (561), Expect = 3e-75
 Identities = 92/130 (70%), Positives = 107/130 (82%)

Query: 4   PKLATDKRTLDKTWKLMDKVVKLCQHPKMNLKNSPPFLLDILPDTYQRLKLIYTKYEDKM 63
                DK+ L+K WKLMDKVVKLCQ PK+NLKNSPPF+LDILPDTYQ L+LI+++ EDKM
Sbjct: 1   FCSEEDKKFLEKAWKLMDKVVKLCQSPKLNLKNSPPFILDILPDTYQHLRLIFSQNEDKM 60

Query: 64  IVLHNNEFFNVFIVNLMRKCKQAIKLFKEGKEKMYDESSHYRRNLTKLSLVFSHMLSELK 123
            +L +NE+F VF+ NLM KCKQ IKLFKEGKE MY+E+S  RRNLTKLSL FSHML ELK
Sbjct: 61  EILQDNEYFKVFLENLMNKCKQIIKLFKEGKEAMYNENSEERRNLTKLSLTFSHMLFELK 120

Query: 124 AIFPNGVFAG 133
           AIFP G+F G
Sbjct: 121 AIFPEGIFIG 130


>gnl|CDD|202379 pfam02761, Cbl_N2, CBL proto-oncogene N-terminus, EF hand-like
           domain.  Cbl is an adaptor protein that binds EGF
           receptors (or other tyrosine kinases) and SH3 domains,
           functioning as a negative regulator of many signaling
           pathways. The N-terminal domain is evolutionarily
           conserved, and is known to bind to phosphorylated
           tyrosine residues. The so called N-terminal domain is
           actually 3 structural domains, of which this is the
           central EF hand domain.
          Length = 85

 Score = 35.6 bits (82), Expect = 0.001
 Identities = 11/19 (57%), Positives = 17/19 (89%)

Query: 135 QFRITKSDAADFWRNNFGN 153
           +FR+TK+DA +FWR++FG 
Sbjct: 1   RFRLTKADAHEFWRHHFGK 19


>gnl|CDD|236512 PRK09430, djlA, Dna-J like membrane chaperone protein; Provisional.
          Length = 267

 Score = 27.5 bits (62), Expect = 2.7
 Identities = 9/40 (22%), Positives = 16/40 (40%), Gaps = 9/40 (22%)

Query: 84  KQAIKLFKEGKEKMYD---------ESSHYRRNLTKLSLV 114
           + A + F+EGKE  +               R +L ++ L 
Sbjct: 95  RAAQQAFREGKEPDFPLREKLRQFRSVCGGRFDLLRMFLE 134


>gnl|CDD|180760 PRK06934, PRK06934, flavodoxin; Provisional.
          Length = 221

 Score = 27.2 bits (60), Expect = 3.5
 Identities = 10/31 (32%), Positives = 15/31 (48%)

Query: 115 FSHMLSELKAIFPNGVFAGDQFRITKSDAAD 145
           FS  L E+K + PN         I+++D  D
Sbjct: 173 FSDSLREIKRLQPNAQLVTQGLAISRNDVTD 203


>gnl|CDD|234048 TIGR02887, spore_ger_x_C, germination protein, Ger(x)C family.
           Members of this protein family are restricted to
           endospore-forming members of the Firmicutes lineage of
           bacteria, including the genera Bacillus, Clostridium,
           Thermoanaerobacter, Carboxydothermus, etc. Members are
           nearly all predicted lipoproteins and belong to probable
           transport operons, some of which have been characterized
           as crucial to germination in response to alanine.
           Members typically have been gene symbols gerKC, gerAC,
           gerYC, etc [Transport and binding proteins, Amino acids,
           peptides and amines, Cellular processes, Sporulation and
           germination].
          Length = 371

 Score = 26.4 bits (59), Expect = 7.7
 Identities = 15/86 (17%), Positives = 28/86 (32%), Gaps = 11/86 (12%)

Query: 31  KMNLKNSPPFLLDILPDTYQRLKLIYTKYEDKMIVLHNNEFFNVFIVNLM-----RKCKQ 85
           K+ +K   P         + +L+   T+ +D    L   +     I         ++ +Q
Sbjct: 260 KIKVKGGKPHF-----KIHIKLEGRITESQDPKENLEKPKNLK-KIEKEAEKEIEKEIEQ 313

Query: 86  AIKLFKEGKEKMYDESSHYRRNLTKL 111
            IK  ++ K           R   KL
Sbjct: 314 LIKKLQKYKIDPLGLGDELYRKHPKL 339


>gnl|CDD|146010 pfam03172, Sp100, Sp100 domain.  The function of this domain is
           unknown. It is about 105 amino acid residues in length
           and is predicted to be predominantly alpha helical. This
           domain is usually found at the amino terminus of protein
           that contain a SAND domain pfam01342.
          Length = 104

 Score = 25.3 bits (56), Expect = 8.8
 Identities = 14/32 (43%), Positives = 20/32 (62%)

Query: 95  EKMYDESSHYRRNLTKLSLVFSHMLSELKAIF 126
           EKMY++S    RNL  +  V  ++LSEL+  F
Sbjct: 40  EKMYEDSLEACRNLVPVPKVVYNVLSELEKTF 71


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.323    0.137    0.414 

Gapped
Lambda     K      H
   0.267   0.0626    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 7,732,296
Number of extensions: 683741
Number of successful extensions: 606
Number of sequences better than 10.0: 1
Number of HSP's gapped: 605
Number of HSP's successfully gapped: 22
Length of query: 154
Length of database: 10,937,602
Length adjustment: 89
Effective length of query: 65
Effective length of database: 6,990,096
Effective search space: 454356240
Effective search space used: 454356240
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (25.2 bits)