RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy9197
(154 letters)
>3bux_B E3 ubiquitin-protein ligase CBL; TKB, signal transduction,
proto-oncogene, complex, ATP-binding, glycoprotein,
kinase, membrane, nucleotide-binding; HET: PTR; 1.35A
{Homo sapiens} SCOP: a.39.1.7 a.48.1.1 d.93.1.1 PDB:
1yvh_A* 3bun_B* 3buo_B* 3bum_B* 3buw_B* 3ob1_B* 3ob2_B*
3plf_B* 2cbl_A* 1b47_A 3pfv_A*
Length = 329
Score = 248 bits (633), Expect = 1e-83
Identities = 98/153 (64%), Positives = 122/153 (79%)
Query: 1 MAPPKLATDKRTLDKTWKLMDKVVKLCQHPKMNLKNSPPFLLDILPDTYQRLKLIYTKYE 60
P DK+ ++K WKLMDKVV+LCQ+PK+ LKNSPP++LD+LPDTYQ L+ I ++YE
Sbjct: 22 SPHPPGTVDKKMVEKCWKLMDKVVRLCQNPKLALKNSPPYILDLLPDTYQHLRTILSRYE 81
Query: 61 DKMIVLHNNEFFNVFIVNLMRKCKQAIKLFKEGKEKMYDESSHYRRNLTKLSLVFSHMLS 120
KM L NE+F VF+ NLM+K KQ I LFKEGKE+MY+E+S RRNLTKLSL+FSHML+
Sbjct: 82 GKMETLGENEYFRVFMENLMKKTKQTISLFKEGKERMYEENSQPRRNLTKLSLIFSHMLA 141
Query: 121 ELKAIFPNGVFAGDQFRITKSDAADFWRNNFGN 153
ELK IFP+G+F GD FRITK+DAA+FWR FG
Sbjct: 142 ELKGIFPSGLFQGDTFRITKADAAEFWRKAFGE 174
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin
ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB:
2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A
2ldr_A*
Length = 389
Score = 248 bits (635), Expect = 3e-83
Identities = 98/150 (65%), Positives = 122/150 (81%)
Query: 4 PKLATDKRTLDKTWKLMDKVVKLCQHPKMNLKNSPPFLLDILPDTYQRLKLIYTKYEDKM 63
P DK+ ++K WKLMDKVV+LCQ+PK+ LKNSPP++LD+LPDTYQ L+ I ++YE KM
Sbjct: 1 PPGTVDKKMVEKCWKLMDKVVRLCQNPKLALKNSPPYILDLLPDTYQHLRTILSRYEGKM 60
Query: 64 IVLHNNEFFNVFIVNLMRKCKQAIKLFKEGKEKMYDESSHYRRNLTKLSLVFSHMLSELK 123
L NE+F VF+ NLM+K KQ I LFKEGKE+MY+E+S RRNLTKLSL+FSHML+ELK
Sbjct: 61 ETLGENEYFRVFMENLMKKTKQTISLFKEGKERMYEENSQPRRNLTKLSLIFSHMLAELK 120
Query: 124 AIFPNGVFAGDQFRITKSDAADFWRNNFGN 153
IFP+G+F GD FRITK+DAA+FWR FG
Sbjct: 121 GIFPSGLFQGDTFRITKADAAEFWRKAFGE 150
>3op0_A Signal transduction protein CBL-C; structural genomics, structural
genomics consortium, SGC, SI transduction protein,
SH3-binding protein; HET: PTR; 2.52A {Homo sapiens}
Length = 323
Score = 217 bits (553), Expect = 1e-71
Identities = 44/155 (28%), Positives = 82/155 (52%), Gaps = 12/155 (7%)
Query: 9 DKRTLDKTWKLMDKVVKLCQHPKMNLKNSPPFLLDILPDTYQRLKLIYTKYED-----KM 63
+ R L + +++ ++ + C P++++ SPP L D+LP T Q L+ + +
Sbjct: 7 EARALGRAVRMLQRLEEQCVDPRLSV--SPPSLRDLLPRTAQLLREVAHSRREAGGGGPG 64
Query: 64 IVLHNNEFFNVFIVNLMRKCKQAIKLF-----KEGKEKMYDESSHYRRNLTKLSLVFSHM 118
+ +F +++ NL K +Q L + ++++ S RR L KL+++FSHM
Sbjct: 65 GPGGSGDFLLIYLANLEAKSRQVAALLPPRGRRSANDELFRAGSRLRRQLAKLAIIFSHM 124
Query: 119 LSELKAIFPNGVFAGDQFRITKSDAADFWRNNFGN 153
+EL A+FP G + G +++TK+ A FWR + G
Sbjct: 125 HAELHALFPGGKYCGHMYQLTKAPAHTFWRESCGA 159
>1uur_A Stata protein, STAT protein; transcription activator, SH2, signal
transduction, transducer, transcription factor; HET:
PTR; 2.7A {Dictyostelium discoideum} SCOP: a.47.1.1
b.2.5.5 d.93.1.1 PDB: 1uus_A*
Length = 473
Score = 57.7 bits (138), Expect = 9e-11
Identities = 14/142 (9%), Positives = 39/142 (27%), Gaps = 20/142 (14%)
Query: 15 KTWKLMDKVVKLCQHPKMNLKNSPPFLLDILPDTYQRLKLI-YTKYEDKMIVLHNNEFFN 73
K VV + + N + P ++ D++ K T E ++
Sbjct: 145 KQLGENQLVVLVLTGARSNFHINGPVKATMICDSHPTNKNNPTTPLEMDSQPIYPATLTA 204
Query: 74 VFIVNLMRKCKQAIKLFKEGKE--KMYDESSHYRRNLTKLSLVFSHMLSELKAIFPNGVF 131
F + + ++ K G + + ++ + + +V ++ +
Sbjct: 205 HFPLKFLAGTRKCSVNLKFGVNIRDLDNVTTTVESDASNPFVVITNECQWEGS------- 257
Query: 132 AGDQFRITKSDAADFWRNNFGN 153
++ F
Sbjct: 258 ----------AGVLLKKDAFDG 269
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 36.8 bits (84), Expect = 0.002
Identities = 25/139 (17%), Positives = 51/139 (36%), Gaps = 30/139 (21%)
Query: 9 DKRTLDKTWKLMDK---VVKLCQHPKMNLKNSPPFLLDILPDTYQRLKLIYTKYEDKMIV 65
TL W L+ K +V+ + + L+ + FL+ + ++ ++ Y ++
Sbjct: 61 VSGTLRLFWTLLSKQEEMVQ--KFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDR 118
Query: 66 LHN-NEFF---NVFIVNLMRKCKQAIKLFKEGKEKMYDESSHYRRNLT--------KLSL 113
L+N N+ F NV + K +QA+ + K N+ K +
Sbjct: 119 LYNDNQVFAKYNVSRLQPYLKLRQALLELRPAK------------NVLIDGVLGSGKTWV 166
Query: 114 VFSHMLSE-LKAIFPNGVF 131
LS ++ +F
Sbjct: 167 ALDVCLSYKVQCKMDFKIF 185
Score = 30.2 bits (67), Expect = 0.32
Identities = 32/193 (16%), Positives = 55/193 (28%), Gaps = 64/193 (33%)
Query: 15 KTWKLMDKVVK----LCQHP------KMNLKNSPPFLLDILPDTYQRLKLIYT------- 57
KTW + V C+ + NSP +L++L ++ +T
Sbjct: 163 KTW-VALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSS 221
Query: 58 --------------------KYEDKMIVLHN---NEFFNVFIVNLMRKCK-------QAI 87
YE+ ++VL N + +N F NL CK + +
Sbjct: 222 NIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAF--NL--SCKILLTTRFKQV 277
Query: 88 KLFKEGKEKMYDESSHYRRNLTK------LSLVFSHMLSEL----KAIFPNGV-FAGDQF 136
F + H+ LT L +L P + +
Sbjct: 278 TDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESI 337
Query: 137 RITKSDAADFWRN 149
R D W++
Sbjct: 338 RDGL-ATWDNWKH 349
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 35.4 bits (81), Expect = 0.005
Identities = 27/133 (20%), Positives = 47/133 (35%), Gaps = 29/133 (21%)
Query: 15 KTWKLMDKVVKLCQHPKMNLKNSPPFLLDILPDTYQRLKLIYTKYEDKMIVLHNNEFFNV 74
W D H K S +LDI+ + L + + + K I E ++
Sbjct: 1644 DVWNRADN------HFKDTYGFS---ILDIVINNPVNLTIHFGGEKGKRI----RENYSA 1690
Query: 75 FIVNLMRK-CKQAIKLFKEGKEKMYDESSHYRR-----NLTKLS----LVFSH-MLSELK 123
I + + K+FKE E S +R + T+ + + +LK
Sbjct: 1691 MIFETIVDGKLKTEKIFKEINEHS--TSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLK 1748
Query: 124 A--IFP-NGVFAG 133
+ + P + FAG
Sbjct: 1749 SKGLIPADATFAG 1761
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 33.0 bits (74), Expect = 0.019
Identities = 9/21 (42%), Positives = 14/21 (66%), Gaps = 4/21 (19%)
Query: 84 KQAIKLFK-EGKEKMY-DESS 102
KQA+K K + K+Y D+S+
Sbjct: 19 KQALK--KLQASLKLYADDSA 37
>4ayb_F DNA-directed RNA polymerase; transferase, multi-subunit,
transcription; 3.20A {Sulfolobus shibatae} PDB: 2wb1_F
2y0s_F 2waq_F 4b1o_F 4b1p_U 2pmz_F 3hkz_F
Length = 113
Score = 26.8 bits (59), Expect = 2.0
Identities = 7/53 (13%), Positives = 19/53 (35%), Gaps = 5/53 (9%)
Query: 10 KRTLDKTWKLMDKVVKLCQHPKMNLKNSPPFLLDILPDTYQRLKLIYTKYEDK 62
K + K+++++ + + L I P T ++ I ++
Sbjct: 46 KCDAESAQKVVEELSSIISREDVRAV-----LASICPITPDEVRSILIMDSNR 93
>1go3_F DNA-directed RNA polymerase subunit F; transferase, transferase,
transcription; 1.75A {Methanococcus jannaschii} SCOP:
a.60.8.2
Length = 107
Score = 25.9 bits (57), Expect = 3.5
Identities = 14/49 (28%), Positives = 25/49 (51%), Gaps = 5/49 (10%)
Query: 10 KRTLDKTWKLMDKVVKLCQHPKMNLKNSPPFLLDILPDTYQRLKLIYTK 58
K ++ KL+++++ L K +K + DILP+ L+ IY K
Sbjct: 46 KLDKEEAKKLVEELISLGIDEKTAVK-----IADILPEDLDDLRAIYYK 89
>3czh_A Cytochrome P450 2R1; vitamin D, vitamin S 25-hydroxylase, drug
metabolism, structural genomics, structural genomics
consortium, SGC; HET: BCD HEM D2V; 2.30A {Homo sapiens}
SCOP: a.104.1.1 PDB: 2ojd_A* 3c6g_A* 3dl9_A*
Length = 481
Score = 26.4 bits (59), Expect = 5.0
Identities = 10/53 (18%), Positives = 22/53 (41%), Gaps = 3/53 (5%)
Query: 18 KLMDKVVKLCQHPKMNLKNSPPFLLDILPDTYQRLKLIYTKYED---KMIVLH 67
+L + V+L + L N+ P++ + +Q+L D ++I
Sbjct: 186 ELFSENVELAASASVFLYNAFPWIGILPFGKHQQLFRNAAVVYDFLSRLIEKA 238
>3rxz_A Polysaccharide deacetylase; structural genomics, PSI-biology,
midwest center for structu genomics, MCSG, carbohydrate
esterase family 4; 2.01A {Mycobacterium smegmatis}
Length = 300
Score = 25.8 bits (57), Expect = 7.1
Identities = 9/41 (21%), Positives = 15/41 (36%)
Query: 111 LSLVFSHMLSELKAIFPNGVFAGDQFRITKSDAADFWRNNF 151
+ L S L + + F+G T + A + WR
Sbjct: 187 VELPVSWALDDWQQYCFVPDFSGTGLIETPAKAIELWRAEL 227
>3e6i_A CYPIIE1, P450-J, cytochrome P450 2E1; CYP2E1, monooxygenase,
acetaminophen, oxidoreductase, heme, endoplasmic
reticulum, iron, membrane; HET: HEM; 2.20A {Homo
sapiens} PDB: 3e4e_A* 3gph_A* 3koh_A* 3lc4_A* 3t3z_A*
Length = 476
Score = 26.0 bits (58), Expect = 7.3
Identities = 10/53 (18%), Positives = 24/53 (45%), Gaps = 3/53 (5%)
Query: 18 KLMDKVVKLCQHPKMNLKNSPPFLLDILPDTYQRLKLIYTKYED---KMIVLH 67
L ++ L P + L N+ P L LP +++++ + ++ + + H
Sbjct: 180 YLFNENFHLLSTPWLQLYNNFPSFLHYLPGSHRKVIKNVAEVKEYVSERVKEH 232
>1vq8_D 50S ribosomal protein L5P; ribosome 50S, protein-protein complex,
RNA-RNA complex, PROT complex, peptidyl transferase
reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A
{Haloarcula marismortui} SCOP: d.77.1.1 PDB: 1vq4_D*
1vq5_D* 1vq6_D* 1vq7_D* 1s72_D* 1vq9_D* 1vqk_D* 1vql_D*
1vqm_D* 1vqn_D* 1vqo_D* 1vqp_D* 1yhq_D* 1yi2_D* 1yij_D*
1yit_D* 1yj9_D* 1yjn_D* 1yjw_D* 2otj_D* ...
Length = 177
Score = 25.3 bits (56), Expect = 9.2
Identities = 4/20 (20%), Positives = 9/20 (45%)
Query: 133 GDQFRITKSDAADFWRNNFG 152
+ R+ +DA F + +
Sbjct: 153 PTKHRLNPADAVAFIESTYD 172
>1po5_A Cytochrome P450 2B4; oxidoreductase, membrane protein, CYP 2B4, CYP
LM2, cytochro monooxygenase; HET: HEM; 1.60A
{Oryctolagus cuniculus} SCOP: a.104.1.1 PDB: 3mvr_A*
2bdm_A* 3g5n_A* 3g93_A* 3kw4_A* 3me6_A* 1suo_A* 3r1a_A*
3r1b_A* 2q6n_A* 3tk3_A* 3ibd_A* 3qoa_A* 3qu8_A*
Length = 476
Score = 25.2 bits (56), Expect = 9.7
Identities = 6/53 (11%), Positives = 15/53 (28%), Gaps = 3/53 (5%)
Query: 18 KLMDKVVKLCQHPKMNLKNSPPFLLDILPDTYQRLKLIYTKYED---KMIVLH 67
L + L + L P T++++ + + + H
Sbjct: 181 DLFFQSFSLISSFSSQVFELFSGFLKHFPGTHRQIYRNLQEINTFIGQSVEKH 233
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.137 0.414
Gapped
Lambda K H
0.267 0.0418 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,311,579
Number of extensions: 121856
Number of successful extensions: 282
Number of sequences better than 10.0: 1
Number of HSP's gapped: 276
Number of HSP's successfully gapped: 23
Length of query: 154
Length of database: 6,701,793
Length adjustment: 85
Effective length of query: 69
Effective length of database: 4,328,508
Effective search space: 298667052
Effective search space used: 298667052
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 53 (25.0 bits)