RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy9197
         (154 letters)



>d3buxb2 a.48.1.1 (B:48-177) N-terminal domain of cbl (N-cbl) {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 130

 Score =  213 bits (544), Expect = 3e-73
 Identities = 84/128 (65%), Positives = 106/128 (82%)

Query: 7   ATDKRTLDKTWKLMDKVVKLCQHPKMNLKNSPPFLLDILPDTYQRLKLIYTKYEDKMIVL 66
             DK+ ++K WKLMDKVV+LCQ+PK+ LKNSPP++LD+LPDTYQ L+ I ++YE KM  L
Sbjct: 3   TVDKKMVEKCWKLMDKVVRLCQNPKLALKNSPPYILDLLPDTYQHLRTILSRYEGKMETL 62

Query: 67  HNNEFFNVFIVNLMRKCKQAIKLFKEGKEKMYDESSHYRRNLTKLSLVFSHMLSELKAIF 126
             NE+F VF+ NLM+K KQ I LFKEGKE+MY+E+S  RRNLTKLSL+FSHML+ELK IF
Sbjct: 63  GENEYFRVFMENLMKKTKQTISLFKEGKERMYEENSQPRRNLTKLSLIFSHMLAELKGIF 122

Query: 127 PNGVFAGD 134
           P+G+F GD
Sbjct: 123 PSGLFQGD 130


>d3buxb1 a.39.1.7 (B:178-263) Cbl {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 86

 Score = 36.7 bits (85), Expect = 1e-04
 Identities = 13/18 (72%), Positives = 15/18 (83%)

Query: 136 FRITKSDAADFWRNNFGN 153
           FRITK+DAA+FWR  FG 
Sbjct: 2   FRITKADAAEFWRKAFGE 19


>d2cxfa1 a.256.1.1 (A:83-249) Rap2 interacting protein X (RUFY3)
           {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 167

 Score = 26.4 bits (58), Expect = 1.3
 Identities = 9/53 (16%), Positives = 16/53 (30%), Gaps = 4/53 (7%)

Query: 78  NLMRKCKQAIKL----FKEGKEKMYDESSHYRRNLTKLSLVFSHMLSELKAIF 126
           NLM   K +IK            +  + +  ++    +     H L   K   
Sbjct: 7   NLMNMAKLSIKGLIESALNLGRTLDSDYAPLQQFFVVMEHCLKHGLKAKKTFL 59


>d1iq8a1 c.1.20.1 (A:6-360) Archaeosine tRNA-guanine
           transglycosylase, N-terminal domain {Archaeon Pyrococcus
           horikoshii [TaxId: 53953]}
          Length = 355

 Score = 26.3 bits (57), Expect = 1.5
 Identities = 12/65 (18%), Positives = 22/65 (33%), Gaps = 7/65 (10%)

Query: 27  CQHPKMNLKNSPPFLLDILPDT-YQR--LKLIYTKYEDKMIVLHNNEFFNVFIVNLMRKC 83
                  L     F       + Y    L+ +  +   +++ LHN           +++ 
Sbjct: 259 TPEGTKRLDELDYFPCSCPVCSKYTPQELREMPKEERTRLLALHNLWVIK----EEIKRV 314

Query: 84  KQAIK 88
           KQAIK
Sbjct: 315 KQAIK 319


>d1kopa_ b.74.1.1 (A:) Carbonic anhydrase {Neisseria gonorrhoeae
          [TaxId: 485]}
          Length = 223

 Score = 26.0 bits (56), Expect = 2.1
 Identities = 13/60 (21%), Positives = 23/60 (38%), Gaps = 6/60 (10%)

Query: 16 TWKLMDKVVKLCQHPKMNLKNSPPFLLDILPDTYQRLKLIYTKYEDKMIVLHNNEFFNVF 75
          +W  + +  +LC   K     SP   ++I      +L  I   Y+  M+ + NN      
Sbjct: 14 SWGNLSEEFRLCSTGK---NQSP---VNITETVSGKLPAIKVNYKPSMVDVENNGHTIQV 67


>d1urja_ e.58.1.1 (A:) Infected cell protein 8, ICP8 {Herpes simplex
           virus 1 [TaxId: 10298]}
          Length = 1122

 Score = 25.5 bits (56), Expect = 3.3
 Identities = 12/41 (29%), Positives = 18/41 (43%), Gaps = 2/41 (4%)

Query: 52  LKLIYTKYEDKMIVLHNNEFFNVFIV--NLMRKCKQAIKLF 90
           LKL  + Y   + V H     +      NL R C++A + F
Sbjct: 75  LKLTPSHYSSSVYVFHGGRHLDPSTQAPNLTRLCERARRHF 115


>d1y8xb1 c.111.1.2 (B:349-440) UBA3 {Human (Homo sapiens) [TaxId:
          9606]}
          Length = 92

 Score = 23.9 bits (52), Expect = 4.4
 Identities = 4/25 (16%), Positives = 10/25 (40%)

Query: 12 TLDKTWKLMDKVVKLCQHPKMNLKN 36
              + KL + +  L     + +K+
Sbjct: 6  QFSPSAKLQEVLDYLTNSASLQMKS 30


>d1g87a2 b.2.2.2 (A:457-614) Endo/exocellulase:cellobiose E-4,
           C-terminal domain {Clostridium cellulolyticum, atcc
           35319 [TaxId: 1521]}
          Length = 158

 Score = 24.0 bits (52), Expect = 7.4
 Identities = 9/27 (33%), Positives = 11/27 (40%), Gaps = 3/27 (11%)

Query: 124 AIFPNGVFAGD---QFRITKSDAADFW 147
            I+P G  A     QFRI       +W
Sbjct: 95  NIYPGGQSACRREVQFRIAAPQGTTYW 121


>d1r5ya_ c.1.20.1 (A:) Queosine tRNA-guanine transglycosylase
           {Zymomonas mobilis [TaxId: 542]}
          Length = 372

 Score = 24.0 bits (51), Expect = 8.9
 Identities = 7/27 (25%), Positives = 13/27 (48%), Gaps = 4/27 (14%)

Query: 62  KMIVLHNNEFFNVFIVNLMRKCKQAIK 88
            ++  HN  F+      LM+K + +I 
Sbjct: 334 MLMTEHNIAFYQ----QLMQKIRDSIS 356


>d1ti8a1 b.19.1.2 (A:13-325) Hemagglutinin {Influenza A virus,
           different strains [TaxId: 11320]}
          Length = 314

 Score = 23.9 bits (52), Expect = 9.3
 Identities = 4/14 (28%), Positives = 7/14 (50%)

Query: 27  CQHPKMNLKNSPPF 40
           C H    + ++ PF
Sbjct: 270 CYHSGGTIISNLPF 283


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.323    0.137    0.414 

Gapped
Lambda     K      H
   0.267   0.0576    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 575,086
Number of extensions: 24664
Number of successful extensions: 73
Number of sequences better than 10.0: 1
Number of HSP's gapped: 73
Number of HSP's successfully gapped: 15
Length of query: 154
Length of database: 2,407,596
Length adjustment: 78
Effective length of query: 76
Effective length of database: 1,336,656
Effective search space: 101585856
Effective search space used: 101585856
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 49 (23.0 bits)