BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9199
(204 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|189237795|ref|XP_972962.2| PREDICTED: similar to tata-box binding protein [Tribolium
castaneum]
gi|270007920|gb|EFA04368.1| hypothetical protein TcasGA2_TC014666 [Tribolium castaneum]
Length = 262
Score = 282 bits (721), Expect = 6e-74, Method: Compositional matrix adjust.
Identities = 130/181 (71%), Positives = 153/181 (84%), Gaps = 5/181 (2%)
Query: 18 PPPTQTVVPIQNHAPPQPPAHD-----PEVDIIINNVVCSFSVRCHLNLRQIALNGVNVE 72
PP ++ + P+ A D PE+DI+INNVVCSFSVRCHLNLR+IALNG+NVE
Sbjct: 22 PPLNGYGGDVEEVSAPEAAAGDSAVEEPEIDIMINNVVCSFSVRCHLNLREIALNGINVE 81
Query: 73 YRRENGMVTMKLRKPYTTASIWSSGKITCTGATSEDQSKIAARRYARCLQRLGFKARFTN 132
YR+ENG +TMKLR+PYTTASIWSSGK+TCTGATSE Q+KIAARR+ARCLQ+LGFK RF N
Sbjct: 82 YRKENGKITMKLRRPYTTASIWSSGKVTCTGATSELQAKIAARRFARCLQKLGFKVRFNN 141
Query: 133 FRVVNVLGTCSMPFAIRILQFSEKHRAAEYEPELHPGVTYRITRPKATLKIFSTGGITVT 192
+RVVNVLGTCSMPFAI+I FSE+H+ A+YEPELHPGVTY++ PKATLKIFSTG +TVT
Sbjct: 142 YRVVNVLGTCSMPFAIKINSFSERHKEADYEPELHPGVTYKLQSPKATLKIFSTGSVTVT 201
Query: 193 A 193
A
Sbjct: 202 A 202
>gi|157136872|ref|XP_001663841.1| tata-box binding protein [Aedes aegypti]
gi|108869850|gb|EAT34075.1| AAEL013653-PA [Aedes aegypti]
Length = 584
Score = 279 bits (714), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 129/173 (74%), Positives = 146/173 (84%), Gaps = 1/173 (0%)
Query: 24 VVPIQNHAPPQPPAHDPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYRRENGMVTMK 83
VVP Q +PE+DI+INNVVCSFSVRCHLNLR IAL G NVE+RRENGMVTMK
Sbjct: 269 VVPASEKEDDQEQEAEPEIDIVINNVVCSFSVRCHLNLRDIALKGFNVEFRRENGMVTMK 328
Query: 84 LRKPYTTASIWSSGKITCTGATSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCS 143
LR+PYTTASIWSSGKITCTGATSEDQ+K+AARRY+RCLQ+LGF RF NFR+VNVLGTCS
Sbjct: 329 LRRPYTTASIWSSGKITCTGATSEDQAKVAARRYSRCLQKLGFNVRFRNFRIVNVLGTCS 388
Query: 144 MPFAIRILQFSEKHRA-AEYEPELHPGVTYRITRPKATLKIFSTGGITVTACN 195
MP+ I I+ FSEK++ A YEPELHPGVTY++ PKATLKIFSTG ITVTA +
Sbjct: 389 MPWGIMIVNFSEKYKKDASYEPELHPGVTYKLYNPKATLKIFSTGSITVTAAS 441
>gi|195134909|ref|XP_002011879.1| GI14331 [Drosophila mojavensis]
gi|193909133|gb|EDW08000.1| GI14331 [Drosophila mojavensis]
Length = 656
Score = 277 bits (709), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 127/161 (78%), Positives = 143/161 (88%), Gaps = 1/161 (0%)
Query: 36 PAHDPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYRRENGMVTMKLRKPYTTASIWS 95
P +PE+DI+INNVVCSFSVRCHL LR+IALNG NVEYRRENGMVTMKLR+PYTTASIWS
Sbjct: 255 PDAEPELDIVINNVVCSFSVRCHLKLREIALNGSNVEYRRENGMVTMKLRRPYTTASIWS 314
Query: 96 SGKITCTGATSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSE 155
SG+ITCTGATSE Q+KIAARRYARCL +LGF F NFR+VNVLGTCSMP+AI+I+ FSE
Sbjct: 315 SGRITCTGATSESQAKIAARRYARCLSKLGFPTHFQNFRIVNVLGTCSMPWAIKIVNFSE 374
Query: 156 KHRA-AEYEPELHPGVTYRITRPKATLKIFSTGGITVTACN 195
+HR A YEPELHPGVTY++ PKATLKIFSTG ITVTA +
Sbjct: 375 RHRDNASYEPELHPGVTYKMREPKATLKIFSTGSITVTAAS 415
>gi|357625409|gb|EHJ75865.1| tata-box binding protein [Danaus plexippus]
Length = 314
Score = 276 bits (706), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 123/152 (80%), Positives = 143/152 (94%)
Query: 42 VDIIINNVVCSFSVRCHLNLRQIALNGVNVEYRRENGMVTMKLRKPYTTASIWSSGKITC 101
+DI+INNVVCSFSV+CHLNLRQIALNGVNVE+RRENGMVTMKLR+PYTTASIWSSG++TC
Sbjct: 87 IDIMINNVVCSFSVKCHLNLRQIALNGVNVEFRRENGMVTMKLRRPYTTASIWSSGRVTC 146
Query: 102 TGATSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKHRAAE 161
TGATSEDQ+K+AARRYAR LQ+LGF+ RF NFRVVNVLGTC MPF IRI+ FS+K++ A+
Sbjct: 147 TGATSEDQAKVAARRYARALQKLGFQVRFRNFRVVNVLGTCRMPFGIRIIAFSKKYKEAD 206
Query: 162 YEPELHPGVTYRITRPKATLKIFSTGGITVTA 193
YEPELHPGVTY++ PKATLKIFSTGG+T+TA
Sbjct: 207 YEPELHPGVTYKLYNPKATLKIFSTGGVTITA 238
>gi|195393646|ref|XP_002055464.1| GJ19385 [Drosophila virilis]
gi|194149974|gb|EDW65665.1| GJ19385 [Drosophila virilis]
Length = 711
Score = 275 bits (703), Expect = 7e-72, Method: Compositional matrix adjust.
Identities = 126/157 (80%), Positives = 141/157 (89%), Gaps = 1/157 (0%)
Query: 39 DPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYRRENGMVTMKLRKPYTTASIWSSGK 98
+PE+DI+INNVVCSFSVRCHL LR+IALNG NVEYRRENGMVTMKLR+PYTTASIWSSG+
Sbjct: 275 EPELDIVINNVVCSFSVRCHLKLREIALNGSNVEYRRENGMVTMKLRRPYTTASIWSSGR 334
Query: 99 ITCTGATSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKHR 158
ITCTGATSE Q+KIAARRYARCL +LGF F NFR+VNVLGTCSMP+AI+I+ FSE+HR
Sbjct: 335 ITCTGATSESQAKIAARRYARCLSKLGFPTHFQNFRIVNVLGTCSMPWAIKIVNFSERHR 394
Query: 159 A-AEYEPELHPGVTYRITRPKATLKIFSTGGITVTAC 194
A YEPELHPGVTY++ PKATLKIFSTG ITVTA
Sbjct: 395 DNASYEPELHPGVTYKMREPKATLKIFSTGSITVTAA 431
>gi|195164313|ref|XP_002022993.1| GL16412 [Drosophila persimilis]
gi|194105055|gb|EDW27098.1| GL16412 [Drosophila persimilis]
Length = 987
Score = 272 bits (695), Expect = 6e-71, Method: Compositional matrix adjust.
Identities = 126/158 (79%), Positives = 140/158 (88%), Gaps = 1/158 (0%)
Query: 39 DPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYRRENGMVTMKLRKPYTTASIWSSGK 98
DPE+DI+INNVVCSFSVRCHL LR IAL G NVEYRRENGMVTMKLR+PYTTASIWSSG+
Sbjct: 496 DPELDIVINNVVCSFSVRCHLKLRDIALRGCNVEYRRENGMVTMKLRRPYTTASIWSSGR 555
Query: 99 ITCTGATSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKHR 158
ITCTGATSE +K+AARRYARCL +LGF RF NFR+VNVLGTCSMP+AI+I+ FSEKHR
Sbjct: 556 ITCTGATSEIMAKVAARRYARCLGKLGFPTRFQNFRIVNVLGTCSMPWAIKIVNFSEKHR 615
Query: 159 A-AEYEPELHPGVTYRITRPKATLKIFSTGGITVTACN 195
A YEPELHPGVTY++ PKATLKIFSTG ITVTA +
Sbjct: 616 DNASYEPELHPGVTYKMKMPKATLKIFSTGSITVTAAS 653
>gi|198471801|ref|XP_001355729.2| GA14764 [Drosophila pseudoobscura pseudoobscura]
gi|198146086|gb|EAL32788.2| GA14764 [Drosophila pseudoobscura pseudoobscura]
Length = 1037
Score = 272 bits (695), Expect = 6e-71, Method: Compositional matrix adjust.
Identities = 126/158 (79%), Positives = 140/158 (88%), Gaps = 1/158 (0%)
Query: 39 DPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYRRENGMVTMKLRKPYTTASIWSSGK 98
DPE+DI+INNVVCSFSVRCHL LR IAL G NVEYRRENGMVTMKLR+PYTTASIWSSG+
Sbjct: 547 DPELDIVINNVVCSFSVRCHLKLRDIALRGCNVEYRRENGMVTMKLRRPYTTASIWSSGR 606
Query: 99 ITCTGATSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKHR 158
ITCTGATSE +K+AARRYARCL +LGF RF NFR+VNVLGTCSMP+AI+I+ FSEKHR
Sbjct: 607 ITCTGATSEIMAKVAARRYARCLGKLGFPTRFQNFRIVNVLGTCSMPWAIKIVNFSEKHR 666
Query: 159 A-AEYEPELHPGVTYRITRPKATLKIFSTGGITVTACN 195
A YEPELHPGVTY++ PKATLKIFSTG ITVTA +
Sbjct: 667 DNASYEPELHPGVTYKMKMPKATLKIFSTGSITVTAAS 704
>gi|242015292|ref|XP_002428298.1| trf2 protein, putative [Pediculus humanus corporis]
gi|212512883|gb|EEB15560.1| trf2 protein, putative [Pediculus humanus corporis]
Length = 289
Score = 271 bits (694), Expect = 8e-71, Method: Compositional matrix adjust.
Identities = 127/167 (76%), Positives = 144/167 (86%), Gaps = 4/167 (2%)
Query: 28 QNHAPPQPPAHDPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYRRENGMVTMKLRKP 87
+ H +P PE+DI+INNVVCSFSVRCHLNL++IA +G NVEYR+ENGMVTMKLRKP
Sbjct: 39 EKHLEEEPA---PEIDIVINNVVCSFSVRCHLNLKEIATHGANVEYRKENGMVTMKLRKP 95
Query: 88 YTTASIWSSGKITCTGATSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFA 147
YTTASIWSSGKITCTGATSED +KIAARR+AR LQ+LGF+ RF NFRVVNVLGTCSMPF
Sbjct: 96 YTTASIWSSGKITCTGATSEDNAKIAARRFARSLQKLGFEVRFNNFRVVNVLGTCSMPFG 155
Query: 148 IRILQFSEKH-RAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTA 193
I+I FS K+ + AEYEPE+HPGVTYR+ PKATLKIFSTG ITVTA
Sbjct: 156 IKINSFSAKYPKQAEYEPEIHPGVTYRLKDPKATLKIFSTGSITVTA 202
>gi|194769912|ref|XP_001967045.1| GF21727 [Drosophila ananassae]
gi|190622840|gb|EDV38364.1| GF21727 [Drosophila ananassae]
Length = 1683
Score = 271 bits (694), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 125/156 (80%), Positives = 138/156 (88%), Gaps = 1/156 (0%)
Query: 40 PEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYRRENGMVTMKLRKPYTTASIWSSGKI 99
PE+DI+INNVVCSFSVRCHL LR IALNG NVEYRRENGMVTMKLR PYTTASIWSSG+I
Sbjct: 1239 PELDIVINNVVCSFSVRCHLKLRDIALNGSNVEYRRENGMVTMKLRHPYTTASIWSSGRI 1298
Query: 100 TCTGATSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKHRA 159
TCTGATSE +K+AARRYARCL +LGF RF NFR+VNVLGTCSMP+AI+I+ FSE+HR
Sbjct: 1299 TCTGATSEPMAKVAARRYARCLGKLGFPTRFQNFRIVNVLGTCSMPWAIKIVNFSERHRE 1358
Query: 160 -AEYEPELHPGVTYRITRPKATLKIFSTGGITVTAC 194
A YEPELHPGVTY++ PKATLKIFSTG ITVTA
Sbjct: 1359 NASYEPELHPGVTYKMRDPKATLKIFSTGSITVTAA 1394
>gi|195438615|ref|XP_002067228.1| GK16294 [Drosophila willistoni]
gi|194163313|gb|EDW78214.1| GK16294 [Drosophila willistoni]
Length = 1222
Score = 271 bits (693), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 124/157 (78%), Positives = 140/157 (89%), Gaps = 1/157 (0%)
Query: 39 DPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYRRENGMVTMKLRKPYTTASIWSSGK 98
+PE+DI+INNVVCSFSVRCHL LR+IAL+G NVEYRRENGMVTMKLR PYTTASIWSSG+
Sbjct: 727 EPELDIVINNVVCSFSVRCHLKLREIALHGANVEYRRENGMVTMKLRHPYTTASIWSSGR 786
Query: 99 ITCTGATSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKHR 158
ITCTGATSE +K+AARRYARCL +LGF RF NFR+VNVLGTCSMP+AI+I+ FSE+HR
Sbjct: 787 ITCTGATSEIMAKVAARRYARCLGKLGFPTRFQNFRIVNVLGTCSMPWAIKIVNFSERHR 846
Query: 159 A-AEYEPELHPGVTYRITRPKATLKIFSTGGITVTAC 194
A YEPELHPGVTY++ PKATLKIFSTG ITVTA
Sbjct: 847 DNASYEPELHPGVTYKMREPKATLKIFSTGSITVTAA 883
>gi|170035005|ref|XP_001845362.1| TATA-box-binding protein [Culex quinquefasciatus]
gi|167876820|gb|EDS40203.1| TATA-box-binding protein [Culex quinquefasciatus]
Length = 429
Score = 271 bits (693), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 127/186 (68%), Positives = 147/186 (79%), Gaps = 6/186 (3%)
Query: 14 SEQEPPPTQTVVPIQNHAPPQP-----PAHDPEVDIIINNVVCSFSVRCHLNLRQIALNG 68
+ Q+ P T T + +P +PE+DI+INNVVCSFSVRCHLNLR IA G
Sbjct: 229 ANQQTPATATATEDDDKTAVEPVECKDEEPEPEIDIVINNVVCSFSVRCHLNLRDIAQKG 288
Query: 69 VNVEYRRENGMVTMKLRKPYTTASIWSSGKITCTGATSEDQSKIAARRYARCLQRLGFKA 128
NVE+RRENGMVTMKLR+PYTTASIWSSGKITCTGATSED +K+AARRY+RCLQ+LGF
Sbjct: 289 FNVEFRRENGMVTMKLRRPYTTASIWSSGKITCTGATSEDSAKVAARRYSRCLQKLGFNV 348
Query: 129 RFTNFRVVNVLGTCSMPFAIRILQFSEKHRA-AEYEPELHPGVTYRITRPKATLKIFSTG 187
RF NFR+VNVLGTCSMP+ I I+ FSEK++ A YEPELHPGVTY++ PKATLKIFSTG
Sbjct: 349 RFRNFRIVNVLGTCSMPWGIMIVNFSEKYKKDASYEPELHPGVTYKLYNPKATLKIFSTG 408
Query: 188 GITVTA 193
ITVT
Sbjct: 409 SITVTG 414
>gi|332031263|gb|EGI70797.1| TATA box-binding protein-like protein 1 [Acromyrmex echinatior]
Length = 401
Score = 270 bits (691), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 124/155 (80%), Positives = 140/155 (90%), Gaps = 1/155 (0%)
Query: 42 VDIIINNVVCSFSVRCHLNLRQIALNGVNVEYRRENGMVTMKLRKPYTTASIWSSGKITC 101
+DI+INNVVCSFSVRCHLNLR+IALNG NVEYRRENGM+TMKLR+PYTTASIWSSGK+TC
Sbjct: 170 LDIVINNVVCSFSVRCHLNLREIALNGSNVEYRRENGMITMKLRRPYTTASIWSSGKVTC 229
Query: 102 TGATSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKHRA-A 160
TGATSE Q+KIAARR+AR LQ+LGFK RF N+RVVNVLGTCSMPFAI+I FS H+ A
Sbjct: 230 TGATSEVQAKIAARRFARSLQKLGFKVRFNNYRVVNVLGTCSMPFAIKITSFSVHHKENA 289
Query: 161 EYEPELHPGVTYRITRPKATLKIFSTGGITVTACN 195
+YEPELHPGVTY++ PKATLKIFSTG +TVTA N
Sbjct: 290 DYEPELHPGVTYKLKEPKATLKIFSTGSVTVTAPN 324
>gi|195044570|ref|XP_001991843.1| GH11849 [Drosophila grimshawi]
gi|193901601|gb|EDW00468.1| GH11849 [Drosophila grimshawi]
Length = 689
Score = 270 bits (690), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 125/156 (80%), Positives = 141/156 (90%), Gaps = 1/156 (0%)
Query: 39 DPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYRRENGMVTMKLRKPYTTASIWSSGK 98
+PE+DI+INNVVCSFSVRCHL LR+IALNG NVEYRRENGMVTMKLR+PYTTASIWSSG+
Sbjct: 207 EPELDIVINNVVCSFSVRCHLKLREIALNGSNVEYRRENGMVTMKLRRPYTTASIWSSGR 266
Query: 99 ITCTGATSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKHR 158
ITCTGATSE Q+KIAARRYARCL +LGF F +FR+VNVLGTCSMP+AI+I+ FSE+HR
Sbjct: 267 ITCTGATSELQAKIAARRYARCLGKLGFPTHFQHFRIVNVLGTCSMPWAIKIVNFSERHR 326
Query: 159 A-AEYEPELHPGVTYRITRPKATLKIFSTGGITVTA 193
A YEPELHPGVTY++ PKATLKIFSTG ITVTA
Sbjct: 327 DNASYEPELHPGVTYKMREPKATLKIFSTGSITVTA 362
>gi|307191585|gb|EFN75083.1| TATA box-binding protein-like protein 1 [Harpegnathos saltator]
Length = 297
Score = 268 bits (685), Expect = 9e-70, Method: Compositional matrix adjust.
Identities = 124/157 (78%), Positives = 140/157 (89%), Gaps = 1/157 (0%)
Query: 40 PEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYRRENGMVTMKLRKPYTTASIWSSGKI 99
PE+DI+INNVVCSFSVRCHLNLR+IAL G NVEYRRENGM+TMKLR+PYTTASIWSSGK+
Sbjct: 67 PELDIVINNVVCSFSVRCHLNLREIALKGSNVEYRRENGMITMKLRRPYTTASIWSSGKV 126
Query: 100 TCTGATSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKHRA 159
TCTGATSE Q+KIAARR+AR LQ+LGF+ RF N+RVVNVLGTC MPFAI+I FS H+
Sbjct: 127 TCTGATSEVQAKIAARRFARSLQKLGFQVRFNNYRVVNVLGTCCMPFAIKITSFSVYHKE 186
Query: 160 -AEYEPELHPGVTYRITRPKATLKIFSTGGITVTACN 195
AEYEPELHPGVTY++ PKATLKIFSTG +TVTA N
Sbjct: 187 NAEYEPELHPGVTYKLKEPKATLKIFSTGSVTVTAPN 223
>gi|350399828|ref|XP_003485652.1| PREDICTED: TATA box-binding protein-like protein 1-like [Bombus
impatiens]
Length = 290
Score = 268 bits (684), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 126/164 (76%), Positives = 144/164 (87%), Gaps = 2/164 (1%)
Query: 34 QPPAHDP-EVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYRRENGMVTMKLRKPYTTAS 92
+P +P E+DI+INNVVCSFSVRCHLNLR+IALNG NVEYRRENGM+TMKLR+PYTTAS
Sbjct: 51 EPHEQEPRELDIVINNVVCSFSVRCHLNLREIALNGSNVEYRRENGMITMKLRRPYTTAS 110
Query: 93 IWSSGKITCTGATSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQ 152
IWSSGK+TCTGATSE Q+KIAARR+AR LQ+LGFK RF N+RVVNVLGTC MPFAI+I
Sbjct: 111 IWSSGKVTCTGATSEVQAKIAARRFARSLQKLGFKVRFNNYRVVNVLGTCCMPFAIKITS 170
Query: 153 FSEKHRA-AEYEPELHPGVTYRITRPKATLKIFSTGGITVTACN 195
FS H+ A+YEPELHPGVTY++ PKATLKIFSTG +TVTA N
Sbjct: 171 FSSCHKENADYEPELHPGVTYKLKEPKATLKIFSTGSVTVTAPN 214
>gi|158285534|ref|XP_308361.4| AGAP007517-PA [Anopheles gambiae str. PEST]
gi|157020038|gb|EAA04678.5| AGAP007517-PA [Anopheles gambiae str. PEST]
Length = 553
Score = 268 bits (684), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 124/163 (76%), Positives = 141/163 (86%), Gaps = 1/163 (0%)
Query: 34 QPPAHDPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYRRENGMVTMKLRKPYTTASI 93
+P PE+DI+INNVVCSFSVRCHLNL IA +G NVE+RRE+GMVTMKLR+PYTTASI
Sbjct: 244 EPQEEQPEIDIVINNVVCSFSVRCHLNLHDIARHGHNVEFRREHGMVTMKLRRPYTTASI 303
Query: 94 WSSGKITCTGATSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQF 153
WSSGKITCTGATSE Q+KIAARRY+RCLQ+LGF RF NFR+VNVLGTCSMPF I I+ F
Sbjct: 304 WSSGKITCTGATSEHQAKIAARRYSRCLQKLGFNVRFRNFRIVNVLGTCSMPFGIMIVNF 363
Query: 154 SEKHRA-AEYEPELHPGVTYRITRPKATLKIFSTGGITVTACN 195
SEK++ A YEPELHPGVTY++ PKATLKIFSTG ITVTA +
Sbjct: 364 SEKYKKDASYEPELHPGVTYKLYSPKATLKIFSTGSITVTAAS 406
>gi|340712494|ref|XP_003394794.1| PREDICTED: TATA box-binding protein-like protein 1-like [Bombus
terrestris]
Length = 290
Score = 267 bits (683), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 126/164 (76%), Positives = 144/164 (87%), Gaps = 2/164 (1%)
Query: 34 QPPAHDP-EVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYRRENGMVTMKLRKPYTTAS 92
+P +P E+DI+INNVVCSFSVRCHLNLR+IALNG NVEYRRENGM+TMKLR+PYTTAS
Sbjct: 51 EPHEQEPRELDIVINNVVCSFSVRCHLNLREIALNGSNVEYRRENGMITMKLRRPYTTAS 110
Query: 93 IWSSGKITCTGATSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQ 152
IWSSGK+TCTGATSE Q+KIAARR+AR LQ+LGFK RF N+RVVNVLGTC MPFAI+I
Sbjct: 111 IWSSGKVTCTGATSEVQAKIAARRFARSLQKLGFKVRFNNYRVVNVLGTCCMPFAIKITS 170
Query: 153 FSEKHRA-AEYEPELHPGVTYRITRPKATLKIFSTGGITVTACN 195
FS H+ A+YEPELHPGVTY++ PKATLKIFSTG +TVTA N
Sbjct: 171 FSSCHKENADYEPELHPGVTYKLKEPKATLKIFSTGSVTVTAPN 214
>gi|328791980|ref|XP_396371.4| PREDICTED: TATA box binding protein-related factor 2 isoform 1
[Apis mellifera]
Length = 306
Score = 267 bits (683), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 127/167 (76%), Positives = 144/167 (86%), Gaps = 4/167 (2%)
Query: 33 PQPPAHDPE---VDIIINNVVCSFSVRCHLNLRQIALNGVNVEYRRENGMVTMKLRKPYT 89
P AH+ E +DI+INNVVCSFSVRCHLNLR+IALNG NVEYRRENGM+TMKLR+PYT
Sbjct: 48 PYMEAHEQEPRELDIVINNVVCSFSVRCHLNLREIALNGSNVEYRRENGMITMKLRRPYT 107
Query: 90 TASIWSSGKITCTGATSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIR 149
TASIWSSGK+TCTGATSE Q+KIAARR+AR LQ+LGFK RF N+RVVNVLGTC MPFAI+
Sbjct: 108 TASIWSSGKVTCTGATSEVQAKIAARRFARSLQKLGFKVRFNNYRVVNVLGTCCMPFAIK 167
Query: 150 ILQFSEKHRA-AEYEPELHPGVTYRITRPKATLKIFSTGGITVTACN 195
I FS H+ A+YEPELHPGVTY++ PKATLKIFSTG +TVTA N
Sbjct: 168 ITSFSSCHKENADYEPELHPGVTYKLKEPKATLKIFSTGSVTVTAPN 214
>gi|307181017|gb|EFN68791.1| TATA box-binding protein-like protein 1 [Camponotus floridanus]
Length = 304
Score = 267 bits (682), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 127/171 (74%), Positives = 144/171 (84%), Gaps = 3/171 (1%)
Query: 26 PIQNHAPPQPPAHDPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYRRENGMVTMKLR 85
P +HA PE+DI+INNVVCSFSVRCHLNLR+IALNG NVEYRRENGM+TMKLR
Sbjct: 60 PYMDHAEVHEEP--PELDIVINNVVCSFSVRCHLNLREIALNGSNVEYRRENGMITMKLR 117
Query: 86 KPYTTASIWSSGKITCTGATSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMP 145
+PYTTASIWSSGK+TCTGATSE Q+KIAARR+AR LQ+LGFK RF N+RVVNVLGTC MP
Sbjct: 118 RPYTTASIWSSGKVTCTGATSEIQAKIAARRFARSLQKLGFKVRFNNYRVVNVLGTCCMP 177
Query: 146 FAIRILQFSEKHRA-AEYEPELHPGVTYRITRPKATLKIFSTGGITVTACN 195
FAI+I FS H+ A+YEPELHPGVTY++ KATLKIFSTG +TVTA N
Sbjct: 178 FAIKITLFSVHHKENADYEPELHPGVTYKLKELKATLKIFSTGSVTVTAPN 228
>gi|380016952|ref|XP_003692431.1| PREDICTED: TATA box-binding protein-like protein 1-like [Apis
florea]
Length = 304
Score = 266 bits (681), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 124/156 (79%), Positives = 140/156 (89%), Gaps = 1/156 (0%)
Query: 41 EVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYRRENGMVTMKLRKPYTTASIWSSGKIT 100
E+DI+INNVVCSFSVRCHLNLR+IALNG NVEYRRENGM+TMKLR+PYTTASIWSSGK+T
Sbjct: 59 ELDIVINNVVCSFSVRCHLNLREIALNGSNVEYRRENGMITMKLRRPYTTASIWSSGKVT 118
Query: 101 CTGATSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKHRA- 159
CTGATSE Q+KIAARR+AR LQ+LGFK RF N+RVVNVLGTC MPFAI+I FS H+
Sbjct: 119 CTGATSEVQAKIAARRFARSLQKLGFKVRFNNYRVVNVLGTCCMPFAIKITSFSSCHKEN 178
Query: 160 AEYEPELHPGVTYRITRPKATLKIFSTGGITVTACN 195
A+YEPELHPGVTY++ PKATLKIFSTG +TVTA N
Sbjct: 179 ADYEPELHPGVTYKLKEPKATLKIFSTGSVTVTAPN 214
>gi|4741972|gb|AAD28784.1|AF136569_1 TATA box binding protein-related factor 2 [Drosophila melanogaster]
Length = 632
Score = 266 bits (680), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 128/184 (69%), Positives = 145/184 (78%), Gaps = 5/184 (2%)
Query: 14 SEQEPPPTQTVVPIQNHAPPQPPAHDPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEY 73
+E E + PI H P H E+DI+INNVVCSFSV CHL LR+IAL G NVEY
Sbjct: 174 AEDEEESSNNAKPIDLHQPIADNEH--ELDIVINNVVCSFSVGCHLKLREIALQGSNVEY 231
Query: 74 RRENGMVTMKLRKPYTTASIWSSGKITCTGATSEDQSKIAARRYARCLQRLGFKARFTNF 133
RRENGMVTMKLR PYTTASIWSSG+ITCTGATSE +K+AARRYARCL +LGF RF NF
Sbjct: 232 RRENGMVTMKLRHPYTTASIWSSGRITCTGATSESMAKVAARRYARCLGKLGFPTRFLNF 291
Query: 134 RVVNVLGTCSMPFAIRILQFSEKHRA-AEYEPELHPGVTYRIT--RPKATLKIFSTGGIT 190
R+VNVLGTCSMP+AI+I+ FSE+HR A YEPELHPGVTY++ PKATLKIFSTG +T
Sbjct: 292 RIVNVLGTCSMPWAIKIVNFSERHRENASYEPELHPGVTYKMRDPDPKATLKIFSTGSVT 351
Query: 191 VTAC 194
VTA
Sbjct: 352 VTAA 355
>gi|383852426|ref|XP_003701729.1| PREDICTED: TATA box-binding protein-like protein 1-like [Megachile
rotundata]
Length = 295
Score = 266 bits (679), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 125/162 (77%), Positives = 143/162 (88%), Gaps = 2/162 (1%)
Query: 36 PAHDP-EVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYRRENGMVTMKLRKPYTTASIW 94
P +P E+DI+INNVVCSFSVRCHLNLR+IALNG NVEYRRE+GM+TMKLR+PYTTASIW
Sbjct: 58 PEQEPRELDIVINNVVCSFSVRCHLNLREIALNGSNVEYRRESGMITMKLRRPYTTASIW 117
Query: 95 SSGKITCTGATSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFS 154
SSGK+TCTGATSE Q+KIAARR+AR LQ+LGFK RF N+RVVNVLGTC MPFAI+I FS
Sbjct: 118 SSGKVTCTGATSEVQAKIAARRFARSLQKLGFKVRFNNYRVVNVLGTCCMPFAIKITSFS 177
Query: 155 EKHRA-AEYEPELHPGVTYRITRPKATLKIFSTGGITVTACN 195
H+ A+YEPELHPGVTY++ PKATLKIFSTG +TVTA N
Sbjct: 178 LYHKENADYEPELHPGVTYKLKEPKATLKIFSTGSVTVTAPN 219
>gi|24640580|ref|NP_511084.2| TATA box binding protein-related factor 2, isoform J [Drosophila
melanogaster]
gi|45554500|ref|NP_996377.1| TATA box binding protein-related factor 2, isoform H [Drosophila
melanogaster]
gi|17862444|gb|AAL39699.1| LD27895p [Drosophila melanogaster]
gi|22831945|gb|AAF46368.2| TATA box binding protein-related factor 2, isoform J [Drosophila
melanogaster]
gi|45446857|gb|AAF46369.3| TATA box binding protein-related factor 2, isoform H [Drosophila
melanogaster]
Length = 632
Score = 265 bits (678), Expect = 6e-69, Method: Compositional matrix adjust.
Identities = 128/184 (69%), Positives = 145/184 (78%), Gaps = 5/184 (2%)
Query: 14 SEQEPPPTQTVVPIQNHAPPQPPAHDPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEY 73
+E E + PI H P H E+DI+INNVVCSFSV CHL LR+IAL G NVEY
Sbjct: 174 AEDEEESSNNAKPIDLHQPIADNEH--ELDIVINNVVCSFSVGCHLKLREIALQGSNVEY 231
Query: 74 RRENGMVTMKLRKPYTTASIWSSGKITCTGATSEDQSKIAARRYARCLQRLGFKARFTNF 133
RRENGMVTMKLR PYTTASIWSSG+ITCTGATSE +K+AARRYARCL +LGF RF NF
Sbjct: 232 RRENGMVTMKLRHPYTTASIWSSGRITCTGATSESMAKVAARRYARCLGKLGFPTRFLNF 291
Query: 134 RVVNVLGTCSMPFAIRILQFSEKHRA-AEYEPELHPGVTYRIT--RPKATLKIFSTGGIT 190
R+VNVLGTCSMP+AI+I+ FSE+HR A YEPELHPGVTY++ PKATLKIFSTG +T
Sbjct: 292 RIVNVLGTCSMPWAIKIVNFSERHRENASYEPELHPGVTYKMRDPDPKATLKIFSTGSVT 351
Query: 191 VTAC 194
VTA
Sbjct: 352 VTAA 355
>gi|4688680|emb|CAB41475.1| TBP-like factor [Drosophila melanogaster]
Length = 537
Score = 265 bits (676), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 128/184 (69%), Positives = 145/184 (78%), Gaps = 5/184 (2%)
Query: 14 SEQEPPPTQTVVPIQNHAPPQPPAHDPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEY 73
+E E + PI H P H E+DI+INNVVCSFSV CHL LR+IAL G NVEY
Sbjct: 79 AEDEEESSNNAKPIDLHQPIADNEH--ELDIVINNVVCSFSVGCHLKLREIALQGSNVEY 136
Query: 74 RRENGMVTMKLRKPYTTASIWSSGKITCTGATSEDQSKIAARRYARCLQRLGFKARFTNF 133
RRENGMVTMKLR PYTTASIWSSG+ITCTGATSE +K+AARRYARCL +LGF RF NF
Sbjct: 137 RRENGMVTMKLRHPYTTASIWSSGRITCTGATSESMAKVAARRYARCLGKLGFPTRFLNF 196
Query: 134 RVVNVLGTCSMPFAIRILQFSEKHRA-AEYEPELHPGVTYRIT--RPKATLKIFSTGGIT 190
R+VNVLGTCSMP+AI+I+ FSE+HR A YEPELHPGVTY++ PKATLKIFSTG +T
Sbjct: 197 RIVNVLGTCSMPWAIKIVNFSERHRENASYEPELHPGVTYKMRDPDPKATLKIFSTGSVT 256
Query: 191 VTAC 194
VTA
Sbjct: 257 VTAA 260
>gi|322796560|gb|EFZ19034.1| hypothetical protein SINV_07503 [Solenopsis invicta]
Length = 303
Score = 264 bits (675), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 122/155 (78%), Positives = 138/155 (89%), Gaps = 1/155 (0%)
Query: 42 VDIIINNVVCSFSVRCHLNLRQIALNGVNVEYRRENGMVTMKLRKPYTTASIWSSGKITC 101
+DI+INNVVCSFSVRCHLNLR+IAL G NVEYRRENGM+TMKLR+PYTTASIWSSGK+TC
Sbjct: 75 LDIVINNVVCSFSVRCHLNLREIALKGSNVEYRRENGMITMKLRRPYTTASIWSSGKVTC 134
Query: 102 TGATSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKHRA-A 160
TGATSE Q+KIAARR+AR LQ+LGFK RF N+RVVNVLGTC MPFAI+I FS H+ A
Sbjct: 135 TGATSEVQAKIAARRFARSLQKLGFKVRFNNYRVVNVLGTCCMPFAIKITSFSIHHKENA 194
Query: 161 EYEPELHPGVTYRITRPKATLKIFSTGGITVTACN 195
+YEPELHPGVTY++ PKATLKIFSTG +TVTA N
Sbjct: 195 DYEPELHPGVTYKLKDPKATLKIFSTGSVTVTAPN 229
>gi|195386532|ref|XP_002051958.1| GJ17285 [Drosophila virilis]
gi|194148415|gb|EDW64113.1| GJ17285 [Drosophila virilis]
Length = 387
Score = 263 bits (671), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 128/195 (65%), Positives = 154/195 (78%), Gaps = 4/195 (2%)
Query: 2 TTAGMTTTHSSHSEQEPPPTQTVVPIQNHAPPQPPAHDPEVDIIINNVVCSFSVRCHLNL 61
T TTT +++ E Q + A P+P + E+DI+INNVVCSFSVRCHL L
Sbjct: 13 TNMAETTTAAANETIETAAIQAAEASEADANPEPSS---ELDIVINNVVCSFSVRCHLKL 69
Query: 62 RQIALNGVNVEYRRENGMVTMKLRKPYTTASIWSSGKITCTGATSEDQSKIAARRYARCL 121
R+IAL+G NVEYRRENGMVTM+LR+PYTTASIWSSG+ITCTGA SE Q+K+AARRYAR L
Sbjct: 70 REIALHGSNVEYRRENGMVTMRLRRPYTTASIWSSGRITCTGAISEPQAKVAARRYARSL 129
Query: 122 QRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKHRA-AEYEPELHPGVTYRITRPKAT 180
+LGF F NFR+VNVLGTCSMP++IRI++FSE+HR A YEPELHPGVTY++ PKAT
Sbjct: 130 GKLGFPVHFQNFRIVNVLGTCSMPWSIRIVKFSERHRDNASYEPELHPGVTYKMRDPKAT 189
Query: 181 LKIFSTGGITVTACN 195
+KIFSTG ITVTA +
Sbjct: 190 MKIFSTGSITVTAAS 204
>gi|347963631|ref|XP_001687775.2| AGAP000336-PA [Anopheles gambiae str. PEST]
gi|333467108|gb|EDO64342.2| AGAP000336-PA [Anopheles gambiae str. PEST]
Length = 533
Score = 262 bits (669), Expect = 7e-68, Method: Compositional matrix adjust.
Identities = 120/155 (77%), Positives = 139/155 (89%), Gaps = 1/155 (0%)
Query: 42 VDIIINNVVCSFSVRCHLNLRQIALNGVNVEYRRENGMVTMKLRKPYTTASIWSSGKITC 101
+DI+INNVVCSFSVRCHLNLR IAL G NVE+RRENGMVTMKLR+PYTTASIWSSGKITC
Sbjct: 244 IDIVINNVVCSFSVRCHLNLRDIALYGDNVEFRRENGMVTMKLRRPYTTASIWSSGKITC 303
Query: 102 TGATSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKHRA-A 160
TGATSEDQ+K+AARRY+RCLQ+LGF R NFR+VNVLGTC+MP+ I+I+ FSEK++ A
Sbjct: 304 TGATSEDQAKVAARRYSRCLQKLGFNVRLRNFRIVNVLGTCAMPWGIKIVNFSEKYKKDA 363
Query: 161 EYEPELHPGVTYRITRPKATLKIFSTGGITVTACN 195
YEPELHPGVTY++ P+ATLKIFSTG ITVTA +
Sbjct: 364 SYEPELHPGVTYKLHSPRATLKIFSTGSITVTAAS 398
>gi|194891201|ref|XP_001977450.1| GG18249 [Drosophila erecta]
gi|190649099|gb|EDV46377.1| GG18249 [Drosophila erecta]
Length = 641
Score = 260 bits (664), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 122/159 (76%), Positives = 137/159 (86%), Gaps = 3/159 (1%)
Query: 39 DPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYRRENGMVTMKLRKPYTTASIWSSGK 98
+PE+DI+INNVVCSFSV CHL LR IAL G NVEYRRENGMVTMKLR PYTTASIWSSG+
Sbjct: 212 EPELDIVINNVVCSFSVGCHLKLRDIALQGSNVEYRRENGMVTMKLRHPYTTASIWSSGR 271
Query: 99 ITCTGATSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKHR 158
ITCTGATSE +K+AARRYARCL +LGF RF NFR+VNVLGTCSMP+AI+I+ FSE+HR
Sbjct: 272 ITCTGATSEAMAKVAARRYARCLGKLGFPTRFLNFRIVNVLGTCSMPWAIKIVNFSERHR 331
Query: 159 A-AEYEPELHPGVTYRIT--RPKATLKIFSTGGITVTAC 194
A YEPELHPGVTY++ PKATLKIFSTG +TVTA
Sbjct: 332 ENASYEPELHPGVTYKMRDPDPKATLKIFSTGSVTVTAA 370
>gi|158288977|ref|XP_310781.4| AGAP000335-PA [Anopheles gambiae str. PEST]
Length = 231
Score = 259 bits (661), Expect = 7e-67, Method: Compositional matrix adjust.
Identities = 119/153 (77%), Positives = 137/153 (89%), Gaps = 1/153 (0%)
Query: 42 VDIIINNVVCSFSVRCHLNLRQIALNGVNVEYRRENGMVTMKLRKPYTTASIWSSGKITC 101
+DI+INNVVCSFSVRCHLNLR IAL G NVE+RRENGMVTMKLR+PYTTASIWSSGKITC
Sbjct: 55 IDIVINNVVCSFSVRCHLNLRDIALYGDNVEFRRENGMVTMKLRRPYTTASIWSSGKITC 114
Query: 102 TGATSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKHRA-A 160
TGATSEDQ+K+AARRY+RCLQ+LGF R NFR+VNVLGTC+MP+ I+I+ FSEK++ A
Sbjct: 115 TGATSEDQAKVAARRYSRCLQKLGFNVRLRNFRIVNVLGTCAMPWGIKIVNFSEKYKKDA 174
Query: 161 EYEPELHPGVTYRITRPKATLKIFSTGGITVTA 193
YEPELHPGVTY++ P+ATLKIFSTG ITVT
Sbjct: 175 SYEPELHPGVTYKLHSPRATLKIFSTGSITVTG 207
>gi|195114322|ref|XP_002001716.1| GI15474 [Drosophila mojavensis]
gi|193912291|gb|EDW11158.1| GI15474 [Drosophila mojavensis]
Length = 442
Score = 258 bits (660), Expect = 7e-67, Method: Compositional matrix adjust.
Identities = 119/156 (76%), Positives = 138/156 (88%), Gaps = 1/156 (0%)
Query: 41 EVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYRRENGMVTMKLRKPYTTASIWSSGKIT 100
E+DI+INNVVCSFSVRCHL LR+IAL+G NVEYRRENGMVTM+LR+PYTTASIWSSG+IT
Sbjct: 88 ELDIVINNVVCSFSVRCHLKLREIALHGSNVEYRRENGMVTMRLRRPYTTASIWSSGRIT 147
Query: 101 CTGATSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKHR-A 159
CTGA SE Q+K+AARRYAR L +LGF RF FR+VNVLGTCSMP+ IRI+ FSE+HR +
Sbjct: 148 CTGAISESQAKVAARRYARSLSKLGFPVRFQQFRIVNVLGTCSMPWPIRIVNFSERHRES 207
Query: 160 AEYEPELHPGVTYRITRPKATLKIFSTGGITVTACN 195
A YEPELHPGVT+++ PKATLKIFSTG ITVTA +
Sbjct: 208 ACYEPELHPGVTFKMQDPKATLKIFSTGSITVTAAS 243
>gi|427787417|gb|JAA59160.1| Hypothetical protein [Rhipicephalus pulchellus]
Length = 321
Score = 256 bits (653), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 123/180 (68%), Positives = 144/180 (80%), Gaps = 8/180 (4%)
Query: 22 QTVVPIQNHAPPQPPA-------HDPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYR 74
Q VV + QP A P +DI+INNVVCSFSVRCHLNLRQIAL NVEYR
Sbjct: 53 QDVVVASSEVMEQPAAAGGTEADSSPVIDIVINNVVCSFSVRCHLNLRQIALTASNVEYR 112
Query: 75 RENGMVTMKLRKPYTTASIWSSGKITCTGATSEDQSKIAARRYARCLQRLGFKARFTNFR 134
RENGM+TMK+R PYTTAS+WSSGK+TCTGATSE+ +K+AARRYAR LQ+LGF+ +F N+R
Sbjct: 113 RENGMLTMKIRTPYTTASMWSSGKVTCTGATSEETAKLAARRYARILQKLGFRVKFMNYR 172
Query: 135 VVNVLGTCSMPFAIRILQFSEKHR-AAEYEPELHPGVTYRITRPKATLKIFSTGGITVTA 193
VVNVLGTC+MPFAI+++ FS+ +R A YEPELHPGVTY+I KATLKIFSTG ITVTA
Sbjct: 173 VVNVLGTCTMPFAIKLIPFSQSNRPIASYEPELHPGVTYKIKDLKATLKIFSTGSITVTA 232
>gi|241239027|ref|XP_002401459.1| TATA-box-binding protein, putative [Ixodes scapularis]
gi|215496181|gb|EEC05822.1| TATA-box-binding protein, putative [Ixodes scapularis]
Length = 316
Score = 254 bits (650), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 119/170 (70%), Positives = 140/170 (82%), Gaps = 1/170 (0%)
Query: 25 VPIQNHAPPQPPAHDPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYRRENGMVTMKL 84
VP + P +DI+INNVVCSFSVRCHLNLRQIAL NVEYRRENGM+TMK+
Sbjct: 54 VPADSTGDDSAADSAPVIDIVINNVVCSFSVRCHLNLRQIALTATNVEYRRENGMLTMKI 113
Query: 85 RKPYTTASIWSSGKITCTGATSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSM 144
R PYTTAS+WSSGK+TCTGATSE+ +K+AARRYAR LQ+LGF+ +F N+RVVNVLGTC+M
Sbjct: 114 RAPYTTASMWSSGKVTCTGATSEETAKMAARRYARILQKLGFRVKFMNYRVVNVLGTCTM 173
Query: 145 PFAIRILQFSEKHRA-AEYEPELHPGVTYRITRPKATLKIFSTGGITVTA 193
PFAI+++ FS+ +R A YEPELHPGVTY+I KATLKIFSTG ITVTA
Sbjct: 174 PFAIKLIPFSQHNRGLASYEPELHPGVTYKIKDLKATLKIFSTGSITVTA 223
>gi|442615484|ref|NP_001259329.1| TATA box binding protein-related factor 2, isoform I [Drosophila
melanogaster]
gi|440216531|gb|AGB95174.1| TATA box binding protein-related factor 2, isoform I [Drosophila
melanogaster]
Length = 1714
Score = 254 bits (648), Expect = 2e-65, Method: Composition-based stats.
Identities = 128/185 (69%), Positives = 146/185 (78%), Gaps = 5/185 (2%)
Query: 14 SEQEPPPTQTVVPIQNHAPPQPPAHDPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEY 73
+E E + PI H P H E+DI+INNVVCSFSV CHL LR+IAL G NVEY
Sbjct: 1256 AEDEEESSNNAKPIDLHQPIADNEH--ELDIVINNVVCSFSVGCHLKLREIALQGSNVEY 1313
Query: 74 RRENGMVTMKLRKPYTTASIWSSGKITCTGATSEDQSKIAARRYARCLQRLGFKARFTNF 133
RRENGMVTMKLR PYTTASIWSSG+ITCTGATSE +K+AARRYARCL +LGF RF NF
Sbjct: 1314 RRENGMVTMKLRHPYTTASIWSSGRITCTGATSESMAKVAARRYARCLGKLGFPTRFLNF 1373
Query: 134 RVVNVLGTCSMPFAIRILQFSEKHRA-AEYEPELHPGVTYRI--TRPKATLKIFSTGGIT 190
R+VNVLGTCSMP+AI+I+ FSE+HR A YEPELHPGVTY++ PKATLKIFSTG +T
Sbjct: 1374 RIVNVLGTCSMPWAIKIVNFSERHRENASYEPELHPGVTYKMRDPDPKATLKIFSTGSVT 1433
Query: 191 VTACN 195
VTA +
Sbjct: 1434 VTAAS 1438
>gi|161077628|ref|NP_001096905.1| TATA box binding protein-related factor 2, isoform E [Drosophila
melanogaster]
gi|281360601|ref|NP_001162701.1| TATA box binding protein-related factor 2, isoform F [Drosophila
melanogaster]
gi|442615486|ref|NP_001259330.1| TATA box binding protein-related factor 2, isoform G [Drosophila
melanogaster]
gi|76446337|gb|ABA42953.1| TRF2 [Drosophila melanogaster]
gi|158031744|gb|ABW09355.1| TATA box binding protein-related factor 2, isoform E [Drosophila
melanogaster]
gi|272506032|gb|ACZ95236.1| TATA box binding protein-related factor 2, isoform F [Drosophila
melanogaster]
gi|440216532|gb|AGB95175.1| TATA box binding protein-related factor 2, isoform G [Drosophila
melanogaster]
Length = 1715
Score = 254 bits (648), Expect = 2e-65, Method: Composition-based stats.
Identities = 128/185 (69%), Positives = 146/185 (78%), Gaps = 5/185 (2%)
Query: 14 SEQEPPPTQTVVPIQNHAPPQPPAHDPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEY 73
+E E + PI H P H E+DI+INNVVCSFSV CHL LR+IAL G NVEY
Sbjct: 1257 AEDEEESSNNAKPIDLHQPIADNEH--ELDIVINNVVCSFSVGCHLKLREIALQGSNVEY 1314
Query: 74 RRENGMVTMKLRKPYTTASIWSSGKITCTGATSEDQSKIAARRYARCLQRLGFKARFTNF 133
RRENGMVTMKLR PYTTASIWSSG+ITCTGATSE +K+AARRYARCL +LGF RF NF
Sbjct: 1315 RRENGMVTMKLRHPYTTASIWSSGRITCTGATSESMAKVAARRYARCLGKLGFPTRFLNF 1374
Query: 134 RVVNVLGTCSMPFAIRILQFSEKHRA-AEYEPELHPGVTYRI--TRPKATLKIFSTGGIT 190
R+VNVLGTCSMP+AI+I+ FSE+HR A YEPELHPGVTY++ PKATLKIFSTG +T
Sbjct: 1375 RIVNVLGTCSMPWAIKIVNFSERHRENASYEPELHPGVTYKMRDPDPKATLKIFSTGSVT 1434
Query: 191 VTACN 195
VTA +
Sbjct: 1435 VTAAS 1439
>gi|391329921|ref|XP_003739415.1| PREDICTED: TATA box-binding protein-like protein 1-like
[Metaseiulus occidentalis]
Length = 284
Score = 252 bits (643), Expect = 7e-65, Method: Compositional matrix adjust.
Identities = 122/166 (73%), Positives = 142/166 (85%), Gaps = 7/166 (4%)
Query: 29 NHAPPQPPAHDPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYRRENGMVTMKLRKPY 88
N +PP E+DI+INNVVCSFSV CHLNLRQIAL G NV +RRE+GMV+MKLR PY
Sbjct: 50 NGSPPD------ELDIVINNVVCSFSVGCHLNLRQIALTGANVVFRRESGMVSMKLRNPY 103
Query: 89 TTASIWSSGKITCTGATSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAI 148
TTASIWSSGKITCTGATSE+ SKIAARR+AR LQ+LGFKARF NF+VVNVLGTC+MPFAI
Sbjct: 104 TTASIWSSGKITCTGATSENTSKIAARRFARTLQKLGFKARFKNFKVVNVLGTCTMPFAI 163
Query: 149 RILQFSEKHR-AAEYEPELHPGVTYRITRPKATLKIFSTGGITVTA 193
R++ FS+ ++ A+YEPELHPGVTY+I +A+LKIFSTG ITVTA
Sbjct: 164 RLVPFSQTNKPIAQYEPELHPGVTYKIKEIRASLKIFSTGSITVTA 209
>gi|405976239|gb|EKC40752.1| TATA box-binding-like protein 1 [Crassostrea gigas]
Length = 280
Score = 251 bits (642), Expect = 8e-65, Method: Compositional matrix adjust.
Identities = 118/160 (73%), Positives = 134/160 (83%), Gaps = 1/160 (0%)
Query: 35 PPAHDPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYRRENGMVTMKLRKPYTTASIW 94
P P +DIIINNVVCSF+ RCHLNLR IA+ G +VEYRRE MV MK+R+PYTTA+IW
Sbjct: 40 PEEEPPTIDIIINNVVCSFNTRCHLNLRSIAMEGSHVEYRREQSMVNMKIRRPYTTATIW 99
Query: 95 SSGKITCTGATSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFS 154
SSGKI CTGATSE++SKIAAR++AR LQRLG+K FTNFRVVNVLGTC MPF I+I FS
Sbjct: 100 SSGKIVCTGATSEEESKIAARKFARKLQRLGYKVTFTNFRVVNVLGTCGMPFRIKIAGFS 159
Query: 155 EKH-RAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTA 193
+KH + A YEPELHPGVTY+I PKATLKIFSTG ITVTA
Sbjct: 160 QKHPKDASYEPELHPGVTYKIKDPKATLKIFSTGSITVTA 199
>gi|195480136|ref|XP_002101150.1| GE15780 [Drosophila yakuba]
gi|194188674|gb|EDX02258.1| GE15780 [Drosophila yakuba]
Length = 1872
Score = 250 bits (638), Expect = 3e-64, Method: Composition-based stats.
Identities = 128/195 (65%), Positives = 154/195 (78%), Gaps = 4/195 (2%)
Query: 8 TTHSSHSEQEPPPTQTVVPIQNHAPPQPPAHD-PEVDIIINNVVCSFSVRCHLNLRQIAL 66
+++++ S + P +P+ N A + D PE+DI+INNVVCSFSV CHL LR IAL
Sbjct: 1406 SSNNAKSIGDQQPENQPLPVVNAANDGNASDDEPELDIVINNVVCSFSVGCHLKLRDIAL 1465
Query: 67 NGVNVEYRRENGMVTMKLRKPYTTASIWSSGKITCTGATSEDQSKIAARRYARCLQRLGF 126
G NVE+RRENGMVTMKLR PYTTASIWSSG+ITCTGATSE +K+AARRYARCL +LGF
Sbjct: 1466 QGSNVEFRRENGMVTMKLRHPYTTASIWSSGRITCTGATSEAMAKVAARRYARCLGKLGF 1525
Query: 127 KARFTNFRVVNVLGTCSMPFAIRILQFSEKHRA-AEYEPELHPGVTYRI--TRPKATLKI 183
RF NFR+VNVLGTCSMP+AI+I+ FSE+HR A YEPELHPGVTY++ PKATLKI
Sbjct: 1526 PTRFLNFRIVNVLGTCSMPWAIKIVNFSERHRENASYEPELHPGVTYKMRDPDPKATLKI 1585
Query: 184 FSTGGITVTACNDSN 198
FSTG +TVTA + S+
Sbjct: 1586 FSTGSVTVTAASVSH 1600
>gi|321468361|gb|EFX79346.1| hypothetical protein DAPPUDRAFT_304868 [Daphnia pulex]
Length = 297
Score = 248 bits (633), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 119/162 (73%), Positives = 137/162 (84%), Gaps = 2/162 (1%)
Query: 34 QPPAHDPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYRRENGMVTMKLRKPYTTASI 93
+ P+ +P +DI INNVVCSFSV+ HLNL+QIA +G NVEYRRENGMVTM+LRKPYTTASI
Sbjct: 60 ETPSEEPVIDITINNVVCSFSVKSHLNLKQIAQSGYNVEYRRENGMVTMRLRKPYTTASI 119
Query: 94 WSSGKITCTGATSEDQSKIAARRYARCLQRLGF-KARFTNFRVVNVLGTCSMPFAIRILQ 152
WSSGK+TCTGATSED++K AARR R + +LG+ K R N+RVVNVLGTC+MPFAI+I
Sbjct: 120 WSSGKVTCTGATSEDEAKQAARRITRSVSKLGYPKLRLVNYRVVNVLGTCTMPFAIKITP 179
Query: 153 FSEKHRA-AEYEPELHPGVTYRITRPKATLKIFSTGGITVTA 193
FS KHR A YEPELHPGVTYR+ PKATLKIFSTG ITVTA
Sbjct: 180 FSAKHRDIASYEPELHPGVTYRLKEPKATLKIFSTGSITVTA 221
>gi|195035138|ref|XP_001989048.1| GH10255 [Drosophila grimshawi]
gi|193905048|gb|EDW03915.1| GH10255 [Drosophila grimshawi]
Length = 314
Score = 240 bits (613), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 113/159 (71%), Positives = 132/159 (83%), Gaps = 1/159 (0%)
Query: 36 PAHDPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYRRENGMVTMKLRKPYTTASIWS 95
P E+D++I NVVCSFSVRCHLNL+ IAL G NVEYRRENGM+TM+LR+PYTTASIWS
Sbjct: 16 PEEALELDVVITNVVCSFSVRCHLNLQNIALKGSNVEYRRENGMLTMRLRRPYTTASIWS 75
Query: 96 SGKITCTGATSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSE 155
SG+ITCTGA SE Q+K+AARRYAR L+ LGF RF +FRVVNVL TC MP+ I+I+ FS
Sbjct: 76 SGRITCTGAISEMQAKVAARRYARILEHLGFPVRFQSFRVVNVLATCCMPWPIKIVNFSM 135
Query: 156 KHRA-AEYEPELHPGVTYRITRPKATLKIFSTGGITVTA 193
+R A YEPEL+PGVTYR+ PKATL+IFSTG ITVTA
Sbjct: 136 HNREMASYEPELYPGVTYRMRNPKATLRIFSTGNITVTA 174
>gi|83764126|emb|CAJ12158.1| trf2 protein [Drosophila simulans]
Length = 196
Score = 237 bits (604), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 111/146 (76%), Positives = 126/146 (86%), Gaps = 2/146 (1%)
Query: 34 QPPA-HDPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYRRENGMVTMKLRKPYTTAS 92
QP A ++PE+DI+INNVVCSFSV CHL LR IAL G NVEYRRENGMVTMKLR PYTTAS
Sbjct: 51 QPMADNEPELDIVINNVVCSFSVGCHLKLRDIALQGSNVEYRRENGMVTMKLRHPYTTAS 110
Query: 93 IWSSGKITCTGATSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQ 152
IWSSG+ITCTGATSE +K+AARRYARCL +LGF RF NFR+VNVLGTCSMP+AI+I+
Sbjct: 111 IWSSGRITCTGATSESMAKVAARRYARCLGKLGFPTRFLNFRIVNVLGTCSMPWAIKIVN 170
Query: 153 FSEKHRA-AEYEPELHPGVTYRITRP 177
FSE+HR A YEPELHPGVTY++ P
Sbjct: 171 FSERHRENASYEPELHPGVTYKMRDP 196
>gi|328704605|ref|XP_003242546.1| PREDICTED: TATA box-binding protein-like protein 1-like
[Acyrthosiphon pisum]
Length = 301
Score = 233 bits (594), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 110/178 (61%), Positives = 146/178 (82%), Gaps = 7/178 (3%)
Query: 28 QNHAPPQPPAHD-----PEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYRRENGMVTM 82
+N+A P P D P+++I I+NVV +FS++ HLNLR +ALNG N+EYRRENGM+TM
Sbjct: 40 ENNALPNKPVQDCLTDNPKLNISISNVVTNFSLKSHLNLRYLALNGHNIEYRRENGMLTM 99
Query: 83 KLRKPYTTASIWSSGKITCTGATSEDQSKIAARRYARCLQRLGF-KARFTNFRVVNVLGT 141
KLRKP TA+IWSSGKI CTG+TSE +KIA+RR+AR +Q+LG+ A+F+++R+VNVLG+
Sbjct: 100 KLRKPNATATIWSSGKIACTGSTSESHAKIASRRFARIIQKLGYHNAKFSSYRIVNVLGS 159
Query: 142 CSMPFAIRILQFSEKHRA-AEYEPELHPGVTYRITRPKATLKIFSTGGITVTACNDSN 198
CS+PF I+++QFSEK++ A+YEPELHPGVT++I KATLKIFSTG ITVTA + SN
Sbjct: 160 CSLPFPIKVIQFSEKYKTIAQYEPELHPGVTFKIKELKATLKIFSTGSITVTAPSVSN 217
>gi|156541942|ref|XP_001600485.1| PREDICTED: TATA box-binding protein-like protein 1 [Nasonia
vitripennis]
Length = 283
Score = 232 bits (591), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 109/155 (70%), Positives = 132/155 (85%), Gaps = 1/155 (0%)
Query: 40 PEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYRRENGMVTMKLRKPYTTASIWSSGKI 99
PE+DIII+NVVCSFSVRCHLNLR+IALNG NVEYRRENG+V M+LRKP T ASI SSGK+
Sbjct: 57 PELDIIISNVVCSFSVRCHLNLREIALNGSNVEYRRENGLVRMRLRKPCTLASISSSGKV 116
Query: 100 TCTGATSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKHRA 159
TCTGATSE+++K AARR AR LQ+LGF+ RF N+R+VNVLGTC+MP+AI+I FS ++
Sbjct: 117 TCTGATSEEEAKKAARRCARSLQKLGFRVRFNNYRIVNVLGTCTMPWAIKITSFSTHYKD 176
Query: 160 -AEYEPELHPGVTYRITRPKATLKIFSTGGITVTA 193
+YEPE+ PGV Y++ KATL+IFSTG ITVTA
Sbjct: 177 IVQYEPEIQPGVIYKLKNMKATLRIFSTGSITVTA 211
>gi|195355070|ref|XP_002044016.1| GM21561 [Drosophila sechellia]
gi|194129269|gb|EDW51312.1| GM21561 [Drosophila sechellia]
Length = 278
Score = 231 bits (589), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 111/146 (76%), Positives = 124/146 (84%), Gaps = 3/146 (2%)
Query: 53 FSVRCHLNLRQIALNGVNVEYRRENGMVTMKLRKPYTTASIWSSGKITCTGATSEDQSKI 112
FSV CHL LR IAL G NVEYRRENGMVTMKLR PYTTASIWSSG+ITCTGATSE +K+
Sbjct: 6 FSVGCHLKLRDIALQGSNVEYRRENGMVTMKLRHPYTTASIWSSGRITCTGATSESMAKV 65
Query: 113 AARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKHRA-AEYEPELHPGVT 171
AARRYARCL +LGF RF NFR+VNVLGTCSMP+AI+I+ FSE+HR A YEPELHPGVT
Sbjct: 66 AARRYARCLGKLGFPTRFLNFRIVNVLGTCSMPWAIKIVNFSERHRENASYEPELHPGVT 125
Query: 172 YRIT--RPKATLKIFSTGGITVTACN 195
Y++ PKATLKIFSTG +TVTA +
Sbjct: 126 YKMRDPDPKATLKIFSTGSVTVTAAS 151
>gi|72133443|ref|XP_798726.1| PREDICTED: TATA box-binding protein-like protein 1-like
[Strongylocentrotus purpuratus]
Length = 325
Score = 223 bits (569), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 106/157 (67%), Positives = 125/157 (79%), Gaps = 1/157 (0%)
Query: 38 HDPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYRRENGMVTMKLRKPYTTASIWSSG 97
++P VDI INNVVC+F VRCHLNLR+I G NVEYRRE G V M+ R+P TA+IWSSG
Sbjct: 94 NEPSVDIYINNVVCAFGVRCHLNLRRIGQYGSNVEYRREYGKVNMRFRRPSATATIWSSG 153
Query: 98 KITCTGATSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKH 157
KIT TG SE+ +K ARR AR LQ+LGF R + ++VVNVLGTCSMPFAIRI FSEKH
Sbjct: 154 KITITGNDSEEHAKKNARRCARALQKLGFNVRLSKYKVVNVLGTCSMPFAIRIRDFSEKH 213
Query: 158 R-AAEYEPELHPGVTYRITRPKATLKIFSTGGITVTA 193
+ +A YEPELHP VTY++ +P+ATLKIFSTG ITVTA
Sbjct: 214 QNSASYEPELHPAVTYKLYQPRATLKIFSTGSITVTA 250
>gi|443686931|gb|ELT90049.1| hypothetical protein CAPTEDRAFT_75203, partial [Capitella teleta]
Length = 196
Score = 222 bits (566), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 105/155 (67%), Positives = 127/155 (81%), Gaps = 1/155 (0%)
Query: 40 PEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYRRENGMVTMKLRKPYTTASIWSSGKI 99
P +DI+INNVVCSFS RCHLNL++IA G +V Y+ ENGMV+MKLRKPYTTA+IWSSG I
Sbjct: 20 PILDIVINNVVCSFSTRCHLNLKRIAREGNHVIYKPENGMVSMKLRKPYTTANIWSSGSI 79
Query: 100 TCTGATSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEK-HR 158
T TG+TSE +KIAARRY R LQ++GF+ RF +RVVNVLGTCS+PF IRI QF++ H+
Sbjct: 80 TATGSTSEVDAKIAARRYCRILQKMGFRVRFGRYRVVNVLGTCSLPFGIRISQFAQDHHK 139
Query: 159 AAEYEPELHPGVTYRITRPKATLKIFSTGGITVTA 193
YEPELHPG TY + P+ATLK+F+TG ITVTA
Sbjct: 140 QCSYEPELHPGATYTMMEPRATLKLFTTGSITVTA 174
>gi|260797205|ref|XP_002593594.1| hypothetical protein BRAFLDRAFT_284100 [Branchiostoma floridae]
gi|229278820|gb|EEN49605.1| hypothetical protein BRAFLDRAFT_284100 [Branchiostoma floridae]
Length = 205
Score = 221 bits (563), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 108/168 (64%), Positives = 126/168 (75%), Gaps = 2/168 (1%)
Query: 28 QNHAPPQPPAHDP-EVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYRRENGMVTMKLRK 86
+N P +P A + +DI I NVVCSF RCHLNLR IALNG NV Y+RE G VTMKLR+
Sbjct: 17 KNSVPGEPAAQEQTSLDIDIANVVCSFRARCHLNLRMIALNGANVIYKRELGKVTMKLRR 76
Query: 87 PYTTASIWSSGKITCTGATSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPF 146
PY TA+IWSSGKI CTGA SED +K ARR AR LQ +GF+ F+ F+VVNVLG C+MPF
Sbjct: 77 PYCTANIWSSGKIVCTGARSEDDAKKGARRCARTLQNMGFQVHFSEFKVVNVLGICAMPF 136
Query: 147 AIRILQFSEKHRA-AEYEPELHPGVTYRITRPKATLKIFSTGGITVTA 193
I+I FS+ H+ A YEPELHPGVTY+I PKA +KIFSTG IT TA
Sbjct: 137 TIKITLFSKHHKENASYEPELHPGVTYKIRDPKAVMKIFSTGSITCTA 184
>gi|348506447|ref|XP_003440770.1| PREDICTED: TATA box-binding protein-like protein 1-like
[Oreochromis niloticus]
Length = 187
Score = 218 bits (554), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 103/163 (63%), Positives = 124/163 (76%), Gaps = 1/163 (0%)
Query: 37 AHDPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYRRENGMVTMKLRKPYTTASIWSS 96
++D +DIII NVV +F RCHLNLR IAL G NV Y+ E G V MKLRKP TASIWSS
Sbjct: 4 SNDEALDIIITNVVATFRTRCHLNLRTIALEGTNVIYKPEVGKVLMKLRKPMITASIWSS 63
Query: 97 GKITCTGATSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEK 156
GKI CTGATSED++K+ ARR ARCLQ+LGFK RF+ F+VVNVL CSMPFA+ ++ F++
Sbjct: 64 GKIICTGATSEDEAKLGARRLARCLQKLGFKVRFSAFKVVNVLAVCSMPFAVHLIDFTKN 123
Query: 157 HR-AAEYEPELHPGVTYRITRPKATLKIFSTGGITVTACNDSN 198
+R A YEPELHP TYRI KAT+++FSTG +TVT N N
Sbjct: 124 NRPIASYEPELHPAATYRIKNLKATIQVFSTGSLTVTGPNVQN 166
>gi|432945913|ref|XP_004083749.1| PREDICTED: TATA box-binding protein-like protein 1-like [Oryzias
latipes]
Length = 187
Score = 217 bits (553), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 103/163 (63%), Positives = 125/163 (76%), Gaps = 1/163 (0%)
Query: 37 AHDPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYRRENGMVTMKLRKPYTTASIWSS 96
++D VDIII NVV +F RCHLNLR IAL G+NV Y+ E G V MKLRKP TASIWSS
Sbjct: 4 SNDEAVDIIITNVVATFRTRCHLNLRTIALEGINVIYKPEVGKVLMKLRKPRITASIWSS 63
Query: 97 GKITCTGATSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEK 156
GKI CTGATSED++K+ ARR ARCLQ+LGFK RF+ F+VVNVL CSMPF+I ++ F++
Sbjct: 64 GKIICTGATSEDEAKLGARRLARCLQKLGFKVRFSAFKVVNVLAVCSMPFSIHLVDFTKN 123
Query: 157 HR-AAEYEPELHPGVTYRITRPKATLKIFSTGGITVTACNDSN 198
+R A YEPELHP TYRI KAT+++FSTG +T+T N N
Sbjct: 124 NRPIASYEPELHPAATYRIKNIKATVQVFSTGSLTITGPNVQN 166
>gi|52345772|ref|NP_001004932.1| TATA box-binding protein-like protein 1 [Xenopus (Silurana)
tropicalis]
gi|82183480|sp|Q6DIY4.1|TBPL1_XENTR RecName: Full=TATA box-binding protein-like protein 1;
Short=TBP-like protein 1; AltName: Full=TATA box-binding
protein-related factor 2; Short=TBP-related factor 2;
AltName: Full=TBP-like factor
gi|49522390|gb|AAH75401.1| TBP-like 1 [Xenopus (Silurana) tropicalis]
gi|89272095|emb|CAJ81743.1| TBP-like 1 [Xenopus (Silurana) tropicalis]
Length = 186
Score = 213 bits (543), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 100/156 (64%), Positives = 122/156 (78%), Gaps = 1/156 (0%)
Query: 39 DPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYRRENGMVTMKLRKPYTTASIWSSGK 98
D +DIII NVVC F RCHLNLR+IAL G+NV Y+RE G V MKLRKP TA+IWSSGK
Sbjct: 6 DVALDIIITNVVCVFRTRCHLNLRKIALEGLNVIYKREVGKVLMKLRKPRITATIWSSGK 65
Query: 99 ITCTGATSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKHR 158
I CTGATSE+++K+ ARR AR LQ+LGF+ +FT F+VVNVL C+MPF IR+ +F++++R
Sbjct: 66 IICTGATSEEEAKVGARRLARSLQKLGFQVKFTEFKVVNVLAVCTMPFEIRLAEFTKQNR 125
Query: 159 -AAEYEPELHPGVTYRITRPKATLKIFSTGGITVTA 193
A YEPELHP V YRI + TL+IFSTG ITVT
Sbjct: 126 PHASYEPELHPAVCYRIKSLRTTLQIFSTGSITVTG 161
>gi|82179859|sp|Q5U385.1|TBPL1_DANRE RecName: Full=TATA box-binding protein-like protein 1;
Short=TBP-like protein 1; AltName: Full=TATA box-binding
protein-related factor 2; Short=TBP-related factor 2;
AltName: Full=TBP-like factor
gi|55250384|gb|AAH85661.1| TBP-like 1 [Danio rerio]
Length = 186
Score = 212 bits (539), Expect = 8e-53, Method: Compositional matrix adjust.
Identities = 98/161 (60%), Positives = 124/161 (77%), Gaps = 1/161 (0%)
Query: 36 PAHDPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYRRENGMVTMKLRKPYTTASIWS 95
P++D +DII+ NVV F RCHLNLR I L G NV Y+ E G V MKLRKP TASIWS
Sbjct: 3 PSNDVALDIIVTNVVSVFRTRCHLNLRTIGLEGTNVIYKPEVGKVLMKLRKPRITASIWS 62
Query: 96 SGKITCTGATSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSE 155
SGKI CTGATSE+++K+ ARR ARCLQ++GFK RF++F+VVNVL CSMPF IR+++F++
Sbjct: 63 SGKIICTGATSEEEAKLGARRLARCLQKMGFKVRFSDFKVVNVLAVCSMPFQIRLIEFTK 122
Query: 156 KHR-AAEYEPELHPGVTYRITRPKATLKIFSTGGITVTACN 195
+R A YEPELHP +YRI ++T+++FSTG ITVT N
Sbjct: 123 NNRPIASYEPELHPAASYRIKNLRSTVQVFSTGNITVTGPN 163
>gi|317575757|ref|NP_001188053.1| TATA box-binding protein-like protein 1 [Ictalurus punctatus]
gi|308324695|gb|ADO29482.1| tata box-binding protein-like protein 1 [Ictalurus punctatus]
Length = 186
Score = 212 bits (539), Expect = 9e-53, Method: Compositional matrix adjust.
Identities = 100/161 (62%), Positives = 123/161 (76%), Gaps = 1/161 (0%)
Query: 36 PAHDPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYRRENGMVTMKLRKPYTTASIWS 95
P++D +DIII NVV F RCHLNLR I L G NV YR E G V MKLRKP TASIWS
Sbjct: 3 PSNDVALDIIITNVVSVFRTRCHLNLRTIGLEGNNVIYRPEVGKVLMKLRKPRITASIWS 62
Query: 96 SGKITCTGATSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSE 155
SGKI CTGATSED++K+ ARR ARCLQ++GFK RF++F+VVNVL CSMPF IR+++F++
Sbjct: 63 SGKIICTGATSEDEAKVGARRLARCLQKIGFKVRFSDFKVVNVLAVCSMPFQIRLIEFTK 122
Query: 156 KHR-AAEYEPELHPGVTYRITRPKATLKIFSTGGITVTACN 195
+R A YE ELHP +YRI +AT+++FSTG +TVT N
Sbjct: 123 NNRPIASYELELHPAASYRIKTLRATVQVFSTGSVTVTGPN 163
>gi|417396717|gb|JAA45392.1| Putative tata-box binding protein tbp component of tfiid and tfiiib
[Desmodus rotundus]
Length = 186
Score = 211 bits (538), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 101/158 (63%), Positives = 122/158 (77%), Gaps = 1/158 (0%)
Query: 39 DPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYRRENGMVTMKLRKPYTTASIWSSGK 98
D +DI+I NVVC F RCHLNLR+IAL G NV Y+R+ G V MKLRKP TA+IWSSGK
Sbjct: 6 DVALDILITNVVCVFRTRCHLNLRKIALEGANVIYKRDVGKVLMKLRKPRITATIWSSGK 65
Query: 99 ITCTGATSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKHR 158
I CTGATSE+++K ARR ARCLQ+LGF+ FT+F+VVNVL C+MPF IR+ +F++ +R
Sbjct: 66 IICTGATSEEEAKFGARRLARCLQKLGFQVIFTDFKVVNVLAVCNMPFEIRLPEFTKNNR 125
Query: 159 A-AEYEPELHPGVTYRITRPKATLKIFSTGGITVTACN 195
A YEPELHP V YRI +ATL+IFSTG ITVT N
Sbjct: 126 PHASYEPELHPAVCYRIKSLRATLQIFSTGSITVTGPN 163
>gi|148224606|ref|NP_001083732.1| TATA box-binding protein-like protein 1 [Xenopus laevis]
gi|25091422|sp|Q9W6Z2.1|TBPL1_XENLA RecName: Full=TATA box-binding protein-like protein 1;
Short=TBP-like protein 1; AltName: Full=TATA box-binding
protein-related factor 2; Short=TBP-related factor 2;
AltName: Full=TBP-like factor; Short=xlTLF
gi|4689078|emb|CAB41487.1| TBP-like factor [Xenopus laevis]
gi|58702024|gb|AAH90226.1| TLF protein [Xenopus laevis]
Length = 186
Score = 211 bits (538), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 99/156 (63%), Positives = 122/156 (78%), Gaps = 1/156 (0%)
Query: 39 DPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYRRENGMVTMKLRKPYTTASIWSSGK 98
D +DI+I NVVC F RCHLNLR+IAL G+NV Y+RE V MKLRKP TA+IWSSGK
Sbjct: 6 DVALDILITNVVCVFRTRCHLNLRKIALEGLNVIYKREVSKVLMKLRKPRITATIWSSGK 65
Query: 99 ITCTGATSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKHR 158
I CTGATSE+++K+ ARR AR LQ+LGF+ +FT F+VVNVL C+MPF IR+ +F++++R
Sbjct: 66 IICTGATSEEEAKVGARRLARSLQKLGFQVKFTEFKVVNVLAVCTMPFEIRLNEFTKQNR 125
Query: 159 -AAEYEPELHPGVTYRITRPKATLKIFSTGGITVTA 193
A YEPELHP V YRI +ATL+IFSTG ITVT
Sbjct: 126 PHASYEPELHPAVCYRIKSLRATLQIFSTGSITVTG 161
>gi|45382085|ref|NP_990086.1| TATA box-binding protein-like protein 1 [Gallus gallus]
gi|326915870|ref|XP_003204235.1| PREDICTED: TATA box-binding protein-like protein 1-like [Meleagris
gallopavo]
gi|25091426|sp|Q9YGV8.1|TBPL1_CHICK RecName: Full=TATA box-binding protein-like protein 1;
Short=TBP-like protein 1; AltName: Full=TBP-like factor
gi|4520318|dbj|BAA75886.1| TBP-like protein [Gallus gallus]
Length = 183
Score = 211 bits (536), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 100/158 (63%), Positives = 122/158 (77%), Gaps = 1/158 (0%)
Query: 39 DPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYRRENGMVTMKLRKPYTTASIWSSGK 98
D +DI+I NVVC F RCHLNLR+IAL G NV Y+R+ G V MKLRKP TA+IWSSGK
Sbjct: 6 DVALDILITNVVCVFRTRCHLNLRKIALEGANVIYKRDVGKVLMKLRKPRITATIWSSGK 65
Query: 99 ITCTGATSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKHR 158
+ CTGATSE+++K ARR ARCLQ+LGF+ FT+F+VVNVL C+MPF IR+ +F++ +R
Sbjct: 66 VICTGATSEEEAKFGARRLARCLQKLGFQVIFTDFKVVNVLAVCNMPFEIRLPEFTKNNR 125
Query: 159 A-AEYEPELHPGVTYRITRPKATLKIFSTGGITVTACN 195
A YEPELHP V YRI +ATL+IFSTG ITVT N
Sbjct: 126 PHASYEPELHPAVCYRIKTLRATLQIFSTGSITVTGPN 163
>gi|45387857|ref|NP_991285.1| TATA box-binding protein-like protein 1 [Danio rerio]
gi|33323633|gb|AAQ07595.1|AF503448_1 TBP-like factor [Danio rerio]
Length = 186
Score = 211 bits (536), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 97/161 (60%), Positives = 124/161 (77%), Gaps = 1/161 (0%)
Query: 36 PAHDPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYRRENGMVTMKLRKPYTTASIWS 95
P++D +DII+ NVV F RCHLNLR I L G NV Y+ E G V MKLRKP TASIWS
Sbjct: 3 PSNDVALDIIVTNVVSVFRTRCHLNLRTIGLEGTNVIYKPEVGKVLMKLRKPRITASIWS 62
Query: 96 SGKITCTGATSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSE 155
SGKI CTGATSE+++K+ +RR ARCLQ++GFK RF++F+VVNVL CSMPF IR+++F++
Sbjct: 63 SGKIICTGATSEEEAKLGSRRLARCLQKMGFKVRFSDFKVVNVLAVCSMPFQIRLIEFTK 122
Query: 156 KHR-AAEYEPELHPGVTYRITRPKATLKIFSTGGITVTACN 195
+R A YEPELHP +YRI ++T+++FSTG ITVT N
Sbjct: 123 NNRPIASYEPELHPAASYRIKNLRSTVQVFSTGNITVTGPN 163
>gi|345328513|ref|XP_001506923.2| PREDICTED: TATA box-binding protein-like protein 1-like isoform 1
[Ornithorhynchus anatinus]
gi|345328515|ref|XP_003431275.1| PREDICTED: TATA box-binding protein-like protein 1-like isoform 2
[Ornithorhynchus anatinus]
Length = 183
Score = 210 bits (535), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 101/156 (64%), Positives = 121/156 (77%), Gaps = 1/156 (0%)
Query: 39 DPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYRRENGMVTMKLRKPYTTASIWSSGK 98
D +DI+I NVVC F RCHLNLR+IAL G NV Y+R+ G V MKLRKP TA+IWSSGK
Sbjct: 6 DVALDILITNVVCVFRTRCHLNLRKIALEGANVIYKRDVGKVLMKLRKPRITATIWSSGK 65
Query: 99 ITCTGATSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKHR 158
I CTGATSE+++K ARR AR LQ+LGF+ FT+FRVVNVL C+MPF IR+ +F++K+R
Sbjct: 66 IICTGATSEEEAKFGARRLARSLQKLGFQVIFTDFRVVNVLAVCNMPFEIRLPEFTKKNR 125
Query: 159 A-AEYEPELHPGVTYRITRPKATLKIFSTGGITVTA 193
A YEPELHP V YRI +ATL+IFSTG ITVT
Sbjct: 126 PHASYEPELHPAVCYRIKTLRATLQIFSTGSITVTG 161
>gi|149722967|ref|XP_001504421.1| PREDICTED: TATA box-binding protein-like protein 1-like [Equus
caballus]
Length = 186
Score = 209 bits (533), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 100/158 (63%), Positives = 121/158 (76%), Gaps = 1/158 (0%)
Query: 39 DPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYRRENGMVTMKLRKPYTTASIWSSGK 98
D +DI+I NVVC F RCHLNLR+IAL G NV Y+R+ G V MKLRKP TA+IWSSGK
Sbjct: 6 DVALDILITNVVCVFRTRCHLNLRKIALEGANVIYKRDVGKVLMKLRKPRITATIWSSGK 65
Query: 99 ITCTGATSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKHR 158
I CTGATSE+++K ARR AR LQ+LGF+ FT+F+VVNVL C+MPF IR+ +F++ +R
Sbjct: 66 IICTGATSEEEAKFGARRLARSLQKLGFQVIFTDFKVVNVLAVCNMPFEIRLPEFTKNNR 125
Query: 159 -AAEYEPELHPGVTYRITRPKATLKIFSTGGITVTACN 195
A YEPELHP V YRI +ATL+IFSTG ITVT N
Sbjct: 126 PHASYEPELHPAVCYRIKSLRATLQIFSTGSITVTGTN 163
>gi|355723500|gb|AES07911.1| TATA box binding protein-like protein 1 [Mustela putorius furo]
Length = 185
Score = 209 bits (532), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 101/164 (61%), Positives = 122/164 (74%), Gaps = 1/164 (0%)
Query: 33 PQPPAHDPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYRRENGMVTMKLRKPYTTAS 92
P D +DI+I NVVC F RCHLNLR+IAL G NV Y+R+ G V MKLRKP TA+
Sbjct: 3 PMDADSDVALDILITNVVCVFRTRCHLNLRKIALEGANVIYKRDVGKVLMKLRKPRITAT 62
Query: 93 IWSSGKITCTGATSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQ 152
IWSSGKI CTGATSE+++K ARR AR LQ+LGF+ FT+F+VVNVL C+MPF IR+ +
Sbjct: 63 IWSSGKIICTGATSEEEAKFGARRLARSLQKLGFQVIFTDFKVVNVLAVCNMPFEIRLPE 122
Query: 153 FSEKHRA-AEYEPELHPGVTYRITRPKATLKIFSTGGITVTACN 195
F++ +R A YEPELHP V YRI +ATL+IFSTG ITVT N
Sbjct: 123 FTKNNRPHASYEPELHPAVCYRIKSLRATLQIFSTGSITVTGPN 166
>gi|12653225|gb|AAH00381.1| TBP-like 1 [Homo sapiens]
gi|167774053|gb|ABZ92461.1| TBP-like 1 [synthetic construct]
Length = 186
Score = 209 bits (531), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 100/158 (63%), Positives = 121/158 (76%), Gaps = 1/158 (0%)
Query: 39 DPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYRRENGMVTMKLRKPYTTASIWSSGK 98
D +DI+I NVVC F RCHLNLR+IAL G NV Y+R+ G V MKLRKP TA+IWSSGK
Sbjct: 6 DVALDILITNVVCVFRTRCHLNLRKIALEGANVIYKRDAGKVLMKLRKPRITATIWSSGK 65
Query: 99 ITCTGATSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKHR 158
I CTGATSE+++K ARR AR LQ+LGF+ FT+F+VVNVL C+MPF IR+ +F++ +R
Sbjct: 66 IICTGATSEEEAKFGARRLARSLQKLGFQVIFTDFKVVNVLAVCNMPFEIRLPEFTKNNR 125
Query: 159 A-AEYEPELHPGVTYRITRPKATLKIFSTGGITVTACN 195
A YEPELHP V YRI +ATL+IFSTG ITVT N
Sbjct: 126 PHASYEPELHPAVCYRIKSLRATLQIFSTGSITVTGPN 163
>gi|197102368|ref|NP_001126267.1| TATA box-binding protein-like protein 1 [Pongo abelii]
gi|75054881|sp|Q5R7U8.1|TBPL1_PONAB RecName: Full=TATA box-binding protein-like protein 1;
Short=TBP-like protein 1; AltName: Full=TATA box-binding
protein-related factor 2; Short=TBP-related factor 2;
AltName: Full=TBP-like factor; AltName: Full=TBP-related
protein
gi|55730887|emb|CAH92162.1| hypothetical protein [Pongo abelii]
Length = 190
Score = 208 bits (530), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 100/158 (63%), Positives = 121/158 (76%), Gaps = 1/158 (0%)
Query: 39 DPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYRRENGMVTMKLRKPYTTASIWSSGK 98
D +DI+I NVVC F RCHLNLR+IAL G NV Y+R+ G V MKLRKP TA+IWSSGK
Sbjct: 6 DVALDILITNVVCVFRTRCHLNLRKIALEGANVIYKRDVGKVLMKLRKPRITATIWSSGK 65
Query: 99 ITCTGATSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKHR 158
I CTGATSE+++K ARR AR LQ+LGF+ FT+F+VVNVL C+MPF IR+ +F++ +R
Sbjct: 66 IICTGATSEEEAKFGARRLARSLQKLGFQVIFTDFKVVNVLAVCNMPFEIRLPEFTKNNR 125
Query: 159 A-AEYEPELHPGVTYRITRPKATLKIFSTGGITVTACN 195
A YEPELHP V YRI +ATL+IFSTG ITVT N
Sbjct: 126 PHASYEPELHPAVCYRIKSLRATLQIFSTGSITVTGPN 163
>gi|444729025|gb|ELW69456.1| TATA box-binding protein-like protein 1 [Tupaia chinensis]
Length = 186
Score = 208 bits (529), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 100/158 (63%), Positives = 121/158 (76%), Gaps = 1/158 (0%)
Query: 39 DPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYRRENGMVTMKLRKPYTTASIWSSGK 98
D +DI+I NVVC F RCHLNLR+IAL G NV Y+R+ G V MKLRKP TA+IWSSGK
Sbjct: 6 DVALDILITNVVCVFRTRCHLNLRKIALEGANVIYKRDVGKVLMKLRKPRITATIWSSGK 65
Query: 99 ITCTGATSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKHR 158
I CTGATSE+++K ARR AR LQ+LGF+ FT+F+VVNVL C+MPF IR+ +F++ +R
Sbjct: 66 IICTGATSEEEAKFGARRLARSLQKLGFQVIFTDFKVVNVLAVCNMPFEIRLPEFTKNNR 125
Query: 159 A-AEYEPELHPGVTYRITRPKATLKIFSTGGITVTACN 195
A YEPELHP V YRI +ATL+IFSTG ITVT N
Sbjct: 126 PHASYEPELHPAVCYRIKSLRATLQIFSTGSITVTGPN 163
>gi|403282108|ref|XP_003932505.1| PREDICTED: TATA box-binding protein-like protein 1 [Saimiri
boliviensis boliviensis]
Length = 186
Score = 208 bits (529), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 100/158 (63%), Positives = 121/158 (76%), Gaps = 1/158 (0%)
Query: 39 DPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYRRENGMVTMKLRKPYTTASIWSSGK 98
D +DI+I NVVC F RCHLNLR+IAL G NV Y+R+ G V MKLRKP TA+IWSSGK
Sbjct: 6 DVALDILITNVVCVFRTRCHLNLRKIALEGANVIYKRDVGKVLMKLRKPRITATIWSSGK 65
Query: 99 ITCTGATSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKHR 158
I CTGATSE+++K ARR AR LQ+LGF+ FT+F+VVNVL C+MPF IR+ +F++ +R
Sbjct: 66 IICTGATSEEEAKFGARRLARSLQKLGFQVIFTDFKVVNVLAVCNMPFEIRLPEFTKNNR 125
Query: 159 A-AEYEPELHPGVTYRITRPKATLKIFSTGGITVTACN 195
A YEPELHP V YRI +ATL+IFSTG ITVT N
Sbjct: 126 PHASYEPELHPAVCYRIKSLRATLQIFSTGSITVTGPN 163
>gi|426234833|ref|XP_004011396.1| PREDICTED: TATA box-binding protein-like protein 1 [Ovis aries]
Length = 186
Score = 208 bits (529), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 100/158 (63%), Positives = 121/158 (76%), Gaps = 1/158 (0%)
Query: 39 DPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYRRENGMVTMKLRKPYTTASIWSSGK 98
D +DI+I NVVC F RCHLNLR+IAL G NV Y+R+ G V MKLRKP TA+IWSSGK
Sbjct: 6 DVALDILITNVVCVFRTRCHLNLRKIALEGANVIYKRDVGKVLMKLRKPRITATIWSSGK 65
Query: 99 ITCTGATSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKHR 158
I CTGATSE+++K ARR AR LQ+LGF+ FT+F+VVNVL C+MPF IR+ +F++ +R
Sbjct: 66 IICTGATSEEEAKFGARRLARSLQKLGFQVIFTDFKVVNVLAVCNMPFEIRLPEFTKNNR 125
Query: 159 A-AEYEPELHPGVTYRITRPKATLKIFSTGGITVTACN 195
A YEPELHP V YRI +ATL+IFSTG ITVT N
Sbjct: 126 PHASYEPELHPAVCYRIKSLRATLQIFSTGSITVTGPN 163
>gi|4759234|ref|NP_004856.1| TATA box-binding protein-like protein 1 [Homo sapiens]
gi|6755811|ref|NP_035733.1| TATA box-binding protein-like protein 1 [Mus musculus]
gi|115495315|ref|NP_001069758.1| TATA box-binding protein-like protein 1 [Bos taurus]
gi|150010556|ref|NP_001092762.1| TATA box-binding protein-like protein 1 [Pan troglodytes]
gi|187761295|ref|NP_001120673.1| TATA box binding protein-like 1 [Rattus norvegicus]
gi|356582420|ref|NP_001239188.1| TATA box-binding protein-like protein 1 [Canis lupus familiaris]
gi|358439409|ref|NP_001240605.1| TATA box-binding protein-like protein 1 [Homo sapiens]
gi|291397013|ref|XP_002714878.1| PREDICTED: TBP-like 1 [Oryctolagus cuniculus]
gi|301773832|ref|XP_002922334.1| PREDICTED: TATA box-binding protein-like protein 1-like [Ailuropoda
melanoleuca]
gi|311243911|ref|XP_003121240.1| PREDICTED: TATA box-binding protein-like protein 1-like isoform 1
[Sus scrofa]
gi|311243913|ref|XP_003121241.1| PREDICTED: TATA box-binding protein-like protein 1-like isoform 2
[Sus scrofa]
gi|332213363|ref|XP_003255790.1| PREDICTED: TATA box-binding protein-like protein 1 isoform 1
[Nomascus leucogenys]
gi|332213365|ref|XP_003255791.1| PREDICTED: TATA box-binding protein-like protein 1 isoform 2
[Nomascus leucogenys]
gi|390462056|ref|XP_003732780.1| PREDICTED: TATA box-binding protein-like protein 1-like [Callithrix
jacchus]
gi|397514939|ref|XP_003827726.1| PREDICTED: TATA box-binding protein-like protein 1 isoform 1 [Pan
paniscus]
gi|397514941|ref|XP_003827727.1| PREDICTED: TATA box-binding protein-like protein 1 isoform 2 [Pan
paniscus]
gi|402868220|ref|XP_003898208.1| PREDICTED: TATA box-binding protein-like protein 1 isoform 1 [Papio
anubis]
gi|402868222|ref|XP_003898209.1| PREDICTED: TATA box-binding protein-like protein 1 isoform 2 [Papio
anubis]
gi|410960078|ref|XP_003986624.1| PREDICTED: TATA box-binding protein-like protein 1 [Felis catus]
gi|426354625|ref|XP_004044755.1| PREDICTED: TATA box-binding protein-like protein 1 isoform 1
[Gorilla gorilla gorilla]
gi|426354627|ref|XP_004044756.1| PREDICTED: TATA box-binding protein-like protein 1 isoform 2
[Gorilla gorilla gorilla]
gi|61248508|sp|P62340.1|TBPL1_MOUSE RecName: Full=TATA box-binding protein-like protein 1;
Short=TBP-like protein 1; AltName: Full=21 kDa TBP-like
protein; AltName: Full=TATA box-binding protein-related
factor 2; Short=TBP-related factor 2; AltName:
Full=TBP-like factor; AltName: Full=TBP-related protein
gi|61248509|sp|P62380.1|TBPL1_HUMAN RecName: Full=TATA box-binding protein-like protein 1;
Short=TBP-like protein 1; AltName: Full=21 kDa TBP-like
protein; AltName: Full=Second TBP of unique DNA protein;
Short=STUD; AltName: Full=TATA box-binding
protein-related factor 2; Short=TBP-related factor 2;
AltName: Full=TBP-like factor; AltName: Full=TBP-related
protein
gi|75076931|sp|Q4R848.1|TBPL1_MACFA RecName: Full=TATA box-binding protein-like protein 1;
Short=TBP-like protein 1; AltName: Full=TATA box-binding
protein-related factor 2; Short=TBP-related factor 2;
AltName: Full=TBP-like factor; AltName: Full=TBP-related
protein
gi|122143990|sp|Q32LB1.1|TBPL1_BOVIN RecName: Full=TATA box-binding protein-like protein 1;
Short=TBP-like protein 1; AltName: Full=TATA box-binding
protein-related factor 2; Short=TBP-related factor 2;
AltName: Full=TBP-like factor; AltName: Full=TBP-related
protein
gi|4581931|gb|AAD24800.1|AF130312_1 STUD protein [Homo sapiens]
gi|4741974|gb|AAD28785.1|AF136570_1 TATA box binding protein-related factor 2 [Homo sapiens]
gi|4218070|dbj|BAA74578.1| 21-kDa TBP-like protein [Mus musculus]
gi|4579753|dbj|BAA75218.1| TBP-like protein [Homo sapiens]
gi|17028477|gb|AAH17559.1| TBP-like 1 [Homo sapiens]
gi|26340704|dbj|BAC34014.1| unnamed protein product [Mus musculus]
gi|26347363|dbj|BAC37330.1| unnamed protein product [Mus musculus]
gi|67968732|dbj|BAE00724.1| unnamed protein product [Macaca fascicularis]
gi|81674129|gb|AAI09667.1| TBP-like 1 [Bos taurus]
gi|119568380|gb|EAW47995.1| TBP-like 1, isoform CRA_a [Homo sapiens]
gi|119568381|gb|EAW47996.1| TBP-like 1, isoform CRA_a [Homo sapiens]
gi|148672813|gb|EDL04760.1| TATA box binding protein-like 1, isoform CRA_a [Mus musculus]
gi|148672815|gb|EDL04762.1| TATA box binding protein-like 1, isoform CRA_a [Mus musculus]
gi|148910857|tpg|DAA06039.1| TPA_inf: TATA box binding protein-like 1 [Pan troglodytes]
gi|158258072|dbj|BAF85009.1| unnamed protein product [Homo sapiens]
gi|189053895|dbj|BAG36402.1| unnamed protein product [Homo sapiens]
gi|208967921|dbj|BAG73799.1| TBP-like 1 [synthetic construct]
gi|281342972|gb|EFB18556.1| hypothetical protein PANDA_011296 [Ailuropoda melanoleuca]
gi|296483997|tpg|DAA26112.1| TPA: TATA box-binding protein-like protein 1 [Bos taurus]
gi|335775744|gb|AEH58674.1| TATA box-binding protein-like protein 1-like protein [Equus
caballus]
gi|343961185|dbj|BAK62182.1| TATA box-binding protein-like protein 1 [Pan troglodytes]
gi|351696954|gb|EHA99872.1| TATA box-binding protein-like protein 1 [Heterocephalus glaber]
gi|355562045|gb|EHH18677.1| hypothetical protein EGK_15331, partial [Macaca mulatta]
gi|380785063|gb|AFE64407.1| TATA box-binding protein-like protein 1 [Macaca mulatta]
gi|383409717|gb|AFH28072.1| TATA box-binding protein-like protein 1 [Macaca mulatta]
gi|384943312|gb|AFI35261.1| TATA box-binding protein-like protein 1 [Macaca mulatta]
gi|410207162|gb|JAA00800.1| TBP-like 1 [Pan troglodytes]
gi|410252770|gb|JAA14352.1| TBP-like 1 [Pan troglodytes]
gi|410291926|gb|JAA24563.1| TBP-like 1 [Pan troglodytes]
gi|410342865|gb|JAA40379.1| TBP-like 1 [Pan troglodytes]
gi|440912697|gb|ELR62245.1| TATA box-binding protein-like protein 1 [Bos grunniens mutus]
Length = 186
Score = 208 bits (529), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 100/158 (63%), Positives = 121/158 (76%), Gaps = 1/158 (0%)
Query: 39 DPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYRRENGMVTMKLRKPYTTASIWSSGK 98
D +DI+I NVVC F RCHLNLR+IAL G NV Y+R+ G V MKLRKP TA+IWSSGK
Sbjct: 6 DVALDILITNVVCVFRTRCHLNLRKIALEGANVIYKRDVGKVLMKLRKPRITATIWSSGK 65
Query: 99 ITCTGATSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKHR 158
I CTGATSE+++K ARR AR LQ+LGF+ FT+F+VVNVL C+MPF IR+ +F++ +R
Sbjct: 66 IICTGATSEEEAKFGARRLARSLQKLGFQVIFTDFKVVNVLAVCNMPFEIRLPEFTKNNR 125
Query: 159 A-AEYEPELHPGVTYRITRPKATLKIFSTGGITVTACN 195
A YEPELHP V YRI +ATL+IFSTG ITVT N
Sbjct: 126 PHASYEPELHPAVCYRIKSLRATLQIFSTGSITVTGPN 163
>gi|354500033|ref|XP_003512107.1| PREDICTED: TATA box-binding protein-like protein 1-like [Cricetulus
griseus]
gi|344257078|gb|EGW13182.1| TATA box-binding protein-like protein 1 [Cricetulus griseus]
Length = 186
Score = 208 bits (529), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 100/158 (63%), Positives = 121/158 (76%), Gaps = 1/158 (0%)
Query: 39 DPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYRRENGMVTMKLRKPYTTASIWSSGK 98
D +DI+I NVVC F RCHLNLR+IAL G NV Y+R+ G V MKLRKP TA+IWSSGK
Sbjct: 6 DVALDILITNVVCVFRTRCHLNLRKIALEGANVIYKRDVGKVLMKLRKPRITATIWSSGK 65
Query: 99 ITCTGATSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKHR 158
I CTGATSE+++K ARR AR LQ+LGF+ FT+F+VVNVL C+MPF IR+ +F++ +R
Sbjct: 66 IICTGATSEEEAKFGARRLARSLQKLGFQVIFTDFKVVNVLAVCNMPFEIRLPEFTKNNR 125
Query: 159 A-AEYEPELHPGVTYRITRPKATLKIFSTGGITVTACN 195
A YEPELHP V YRI +ATL+IFSTG ITVT N
Sbjct: 126 PHASYEPELHPAVCYRIKSLRATLQIFSTGSITVTGPN 163
>gi|355748887|gb|EHH53370.1| hypothetical protein EGM_14000, partial [Macaca fascicularis]
Length = 186
Score = 208 bits (529), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 100/158 (63%), Positives = 121/158 (76%), Gaps = 1/158 (0%)
Query: 39 DPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYRRENGMVTMKLRKPYTTASIWSSGK 98
D +DI+I NVVC F RCHLNLR+IAL G NV Y+R+ G V MKLRKP TA+IWSSGK
Sbjct: 6 DVALDILITNVVCVFRTRCHLNLRKIALEGANVIYKRDVGKVLMKLRKPRITATIWSSGK 65
Query: 99 ITCTGATSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKHR 158
I CTGATSE+++K ARR AR LQ+LGF+ FT+F+VVNVL C+MPF IR+ +F++ +R
Sbjct: 66 IICTGATSEEEAKFGARRLARSLQKLGFQVIFTDFKVVNVLAVCNMPFEIRLPEFTKTNR 125
Query: 159 A-AEYEPELHPGVTYRITRPKATLKIFSTGGITVTACN 195
A YEPELHP V YRI +ATL+IFSTG ITVT N
Sbjct: 126 PHASYEPELHPAVCYRIKSLRATLQIFSTGSITVTGPN 163
>gi|126311117|ref|XP_001380665.1| PREDICTED: TATA box-binding protein-like protein 1-like
[Monodelphis domestica]
gi|395534983|ref|XP_003769512.1| PREDICTED: TATA box-binding protein-like protein 1 [Sarcophilus
harrisii]
Length = 186
Score = 207 bits (528), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 100/158 (63%), Positives = 121/158 (76%), Gaps = 1/158 (0%)
Query: 39 DPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYRRENGMVTMKLRKPYTTASIWSSGK 98
D +DI+I NVVC F RCHLNLR+IAL G NV Y+R+ G V MKLRKP TA+IWSSGK
Sbjct: 6 DVALDILITNVVCVFRTRCHLNLRKIALEGANVIYKRDVGKVLMKLRKPRITATIWSSGK 65
Query: 99 ITCTGATSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKHR 158
I CTGATSE+++K ARR AR LQ+LGF+ FT+F+VVNVL C+MPF IR+ +F++ +R
Sbjct: 66 IICTGATSEEEAKFGARRLARSLQKLGFQVIFTDFKVVNVLAVCNMPFEIRLPEFTKNNR 125
Query: 159 A-AEYEPELHPGVTYRITRPKATLKIFSTGGITVTACN 195
A YEPELHP V YRI +ATL+IFSTG ITVT N
Sbjct: 126 PHASYEPELHPAVCYRIKALRATLQIFSTGSITVTGPN 163
>gi|149032878|gb|EDL87733.1| rCG41948, isoform CRA_b [Rattus norvegicus]
gi|149032879|gb|EDL87734.1| rCG41948, isoform CRA_b [Rattus norvegicus]
Length = 218
Score = 207 bits (528), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 99/155 (63%), Positives = 120/155 (77%), Gaps = 1/155 (0%)
Query: 39 DPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYRRENGMVTMKLRKPYTTASIWSSGK 98
D +DI+I NVVC F RCHLNLR+IAL G NV Y+R+ G V MKLRKP TA+IWSSGK
Sbjct: 6 DVALDILITNVVCVFRTRCHLNLRKIALEGANVIYKRDVGKVLMKLRKPRITATIWSSGK 65
Query: 99 ITCTGATSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKHR 158
I CTGATSE+++K ARR AR LQ+LGF+ FT+F+VVNVL C+MPF IR+ +F++ +R
Sbjct: 66 IICTGATSEEEAKFGARRLARSLQKLGFQVIFTDFKVVNVLAVCNMPFEIRLPEFTKNNR 125
Query: 159 -AAEYEPELHPGVTYRITRPKATLKIFSTGGITVT 192
A YEPELHP V YRI +ATL+IFSTG ITVT
Sbjct: 126 PHASYEPELHPAVCYRIKSLRATLQIFSTGSITVT 160
>gi|327290497|ref|XP_003229959.1| PREDICTED: TATA box-binding protein-like protein 1-like [Anolis
carolinensis]
Length = 186
Score = 207 bits (528), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 99/158 (62%), Positives = 121/158 (76%), Gaps = 1/158 (0%)
Query: 39 DPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYRRENGMVTMKLRKPYTTASIWSSGK 98
D +DI+I NVVC F RCHLNLR+IAL G NV Y+R+ G V MKLRKP TA+IWSSGK
Sbjct: 6 DVALDILITNVVCVFRTRCHLNLRKIALEGANVIYKRDVGKVLMKLRKPRITATIWSSGK 65
Query: 99 ITCTGATSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKHR 158
+ CTGATSE+++K ARR AR LQ+LGF+ FT+F+VVNVL C+MPF IR+ +F++ +R
Sbjct: 66 VICTGATSEEEAKFGARRLARSLQKLGFQVIFTDFKVVNVLAVCNMPFEIRLPEFTKSNR 125
Query: 159 A-AEYEPELHPGVTYRITRPKATLKIFSTGGITVTACN 195
A YEPELHP V YRI +ATL+IFSTG ITVT N
Sbjct: 126 PHASYEPELHPAVCYRIKSLRATLQIFSTGSITVTGPN 163
>gi|153791987|ref|NP_001093265.1| TATA box binding protein-like 1 [Takifugu rubripes]
gi|148910859|tpg|DAA06040.1| TPA_inf: TATA box binding protein-like 1 [Takifugu rubripes]
Length = 185
Score = 207 bits (528), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 95/155 (61%), Positives = 123/155 (79%), Gaps = 1/155 (0%)
Query: 38 HDPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYRRENGMVTMKLRKPYTTASIWSSG 97
++ E+DIII+NVV +F RCHLNLR IAL G NV Y+ E G VTMKLRKP TA+IWSSG
Sbjct: 5 NEGELDIIISNVVATFRTRCHLNLRTIALEGNNVIYKPEQGTVTMKLRKPRITANIWSSG 64
Query: 98 KITCTGATSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKH 157
KI CTGA+SED++K+ ARR ARCLQ+LGFK +F+ F+VVNV+ CSMPF I ++ F++K+
Sbjct: 65 KIICTGASSEDEAKLGARRLARCLQKLGFKVKFSAFKVVNVMAGCSMPFKISLIDFTKKN 124
Query: 158 R-AAEYEPELHPGVTYRITRPKATLKIFSTGGITV 191
R A YEPEL+P Y + +PKAT+K+FSTG +T+
Sbjct: 125 RPIATYEPELYPAAMYTMRQPKATIKVFSTGSVTI 159
>gi|224048129|ref|XP_002191326.1| PREDICTED: TATA box-binding protein-like protein 1 isoform 1
[Taeniopygia guttata]
gi|449497471|ref|XP_004174223.1| PREDICTED: TATA box-binding protein-like protein 1 isoform 2
[Taeniopygia guttata]
Length = 183
Score = 207 bits (527), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 99/158 (62%), Positives = 121/158 (76%), Gaps = 1/158 (0%)
Query: 39 DPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYRRENGMVTMKLRKPYTTASIWSSGK 98
D +DI+I NVVC F RCHLNLR+IAL G NV Y+R+ G V MKLRKP TA+IWSSGK
Sbjct: 6 DVALDILITNVVCVFRTRCHLNLRKIALEGANVIYKRDVGKVLMKLRKPRITATIWSSGK 65
Query: 99 ITCTGATSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKHR 158
+ CTGATSE+++K ARR AR LQ+LGF+ FT+F+VVNVL C+MPF IR+ +F++ +R
Sbjct: 66 VICTGATSEEEAKFGARRLARSLQKLGFQVIFTDFKVVNVLAVCNMPFEIRLPEFTKNNR 125
Query: 159 A-AEYEPELHPGVTYRITRPKATLKIFSTGGITVTACN 195
A YEPELHP V YRI +ATL+IFSTG ITVT N
Sbjct: 126 PHASYEPELHPAVCYRIKSLRATLQIFSTGSITVTGPN 163
>gi|449274009|gb|EMC83325.1| TATA box-binding protein-like protein 1 [Columba livia]
Length = 183
Score = 207 bits (526), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 99/158 (62%), Positives = 121/158 (76%), Gaps = 1/158 (0%)
Query: 39 DPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYRRENGMVTMKLRKPYTTASIWSSGK 98
D +DI+I NVVC F RCHLNLR+IAL G NV Y+R+ G V MKLRKP TA+IWSSGK
Sbjct: 6 DVALDILITNVVCVFRTRCHLNLRKIALEGANVIYKRDVGKVLMKLRKPRITATIWSSGK 65
Query: 99 ITCTGATSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKHR 158
+ CTGATSE+++K ARR AR LQ+LGF+ FT+F+VVNVL C+MPF IR+ +F++ +R
Sbjct: 66 VICTGATSEEEAKFGARRLARSLQKLGFQVIFTDFKVVNVLAVCNMPFEIRLPEFTKNNR 125
Query: 159 A-AEYEPELHPGVTYRITRPKATLKIFSTGGITVTACN 195
A YEPELHP V YRI +ATL+IFSTG ITVT N
Sbjct: 126 PHASYEPELHPAVCYRIKTLRATLQIFSTGSITVTGPN 163
>gi|348565514|ref|XP_003468548.1| PREDICTED: TATA box-binding protein-like protein 1-like [Cavia
porcellus]
Length = 165
Score = 207 bits (526), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 99/156 (63%), Positives = 120/156 (76%), Gaps = 1/156 (0%)
Query: 39 DPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYRRENGMVTMKLRKPYTTASIWSSGK 98
D +DI+I NVVC F RCHLNLR+IAL G NV Y+R+ G V MKLRKP TA+IWSSGK
Sbjct: 6 DVALDILITNVVCVFRTRCHLNLRKIALEGANVIYKRDVGKVLMKLRKPRITATIWSSGK 65
Query: 99 ITCTGATSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKHR 158
I CTGATSE+++K ARR AR LQ+LGF+ FT+F+VVNVL C+MPF IR+ +F++ +R
Sbjct: 66 IICTGATSEEEAKFGARRLARSLQKLGFQVIFTDFKVVNVLAVCNMPFEIRLPEFTKNNR 125
Query: 159 -AAEYEPELHPGVTYRITRPKATLKIFSTGGITVTA 193
A YEPELHP V YRI +ATL+IFSTG ITVT
Sbjct: 126 PHASYEPELHPAVCYRIKSLRATLQIFSTGSITVTG 161
>gi|47205581|emb|CAF96147.1| unnamed protein product [Tetraodon nigroviridis]
gi|47224248|emb|CAG09094.1| unnamed protein product [Tetraodon nigroviridis]
Length = 185
Score = 206 bits (524), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 94/155 (60%), Positives = 122/155 (78%), Gaps = 1/155 (0%)
Query: 38 HDPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYRRENGMVTMKLRKPYTTASIWSSG 97
++ E+DIII+NVV +F RCHLNLR IAL G NV Y+ E G VTMKLRKP TA+IWSSG
Sbjct: 5 NEGELDIIISNVVATFRTRCHLNLRTIALEGNNVIYKPEQGTVTMKLRKPRITANIWSSG 64
Query: 98 KITCTGATSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKH 157
KI CTGA+SED++K+ ARR ARCLQ+LGFK F+ F+VVNV+ TC+MPF I ++ F++++
Sbjct: 65 KIICTGASSEDEAKMGARRLARCLQKLGFKVSFSAFKVVNVMATCAMPFKISLIDFTKRN 124
Query: 158 R-AAEYEPELHPGVTYRITRPKATLKIFSTGGITV 191
R A YEPELHP Y + PKAT+K+F+TG +T+
Sbjct: 125 RPIATYEPELHPAAMYTMRHPKATVKVFATGSVTI 159
>gi|21706933|gb|AAH33926.1| Tbpl1 protein [Mus musculus]
Length = 188
Score = 206 bits (523), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 99/155 (63%), Positives = 120/155 (77%), Gaps = 1/155 (0%)
Query: 39 DPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYRRENGMVTMKLRKPYTTASIWSSGK 98
D +DI+I NVVC F RCHLNLR+IAL G NV Y+R+ G V MKLRKP TA+IWSSGK
Sbjct: 6 DVALDILITNVVCVFRTRCHLNLRKIALEGANVIYKRDVGKVLMKLRKPRITATIWSSGK 65
Query: 99 ITCTGATSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKHR 158
I CTGATSE+++K ARR AR LQ+LGF+ FT+F+VVNVL C+MPF IR+ +F++ +R
Sbjct: 66 IICTGATSEEEAKFGARRLARSLQKLGFQVIFTDFKVVNVLAVCNMPFEIRLPEFTKNNR 125
Query: 159 A-AEYEPELHPGVTYRITRPKATLKIFSTGGITVT 192
A YEPELHP V YRI +ATL+IFSTG ITVT
Sbjct: 126 PHASYEPELHPAVCYRIKSLRATLQIFSTGSITVT 160
>gi|328719261|ref|XP_003246709.1| PREDICTED: TATA box-binding protein-like protein 1-like isoform 1
[Acyrthosiphon pisum]
gi|328719263|ref|XP_003246710.1| PREDICTED: TATA box-binding protein-like protein 1-like isoform 2
[Acyrthosiphon pisum]
Length = 288
Score = 205 bits (521), Expect = 9e-51, Method: Compositional matrix adjust.
Identities = 97/161 (60%), Positives = 129/161 (80%), Gaps = 2/161 (1%)
Query: 39 DPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYRRENGMVTMKLRKPYTTASIWSSGK 98
D E+ I I+NV SF+V+ HLNLR +AL+G NVEY+RE + MKLRKP TA IWSSGK
Sbjct: 49 DDEILINISNVSASFNVKSHLNLRYLALHGHNVEYKREKAKLVMKLRKPSATAIIWSSGK 108
Query: 99 ITCTGATSEDQSKIAARRYARCLQRLGF-KARFTNFRVVNVLGTCSMPFAIRILQFSEKH 157
I C G+ SE SKIA++R AR +QRLG+ A+F++F+++NVLG+CS+PF+IRI+QFSEK+
Sbjct: 109 IVCIGSASEYDSKIASKRIARIIQRLGYSDAKFSSFKIINVLGSCSLPFSIRIIQFSEKY 168
Query: 158 RA-AEYEPELHPGVTYRITRPKATLKIFSTGGITVTACNDS 197
+ ++YEPEL+PGVTYRI KATLKI+STG ITV A +++
Sbjct: 169 KLNSQYEPELNPGVTYRIKEFKATLKIYSTGSITVNASSEA 209
>gi|159147345|gb|ABW91067.1| TATA box-binding protein related factor 2 [Bos taurus]
Length = 186
Score = 205 bits (521), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 99/158 (62%), Positives = 120/158 (75%), Gaps = 1/158 (0%)
Query: 39 DPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYRRENGMVTMKLRKPYTTASIWSSGK 98
D +DI+I NVVC F RCHLNLR+IAL G NV Y+R+ G V MKLRKP TA+IWSSGK
Sbjct: 6 DVALDILITNVVCVFRTRCHLNLRKIALEGANVIYKRDVGKVLMKLRKPRITATIWSSGK 65
Query: 99 ITCTGATSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKHR 158
I CTGATSE+++K ARR AR LQ+LGF+ T+F+VVNVL C+MPF IR+ +F++ +R
Sbjct: 66 IICTGATSEEEAKFGARRLARSLQKLGFQVIXTDFKVVNVLAVCNMPFEIRLPEFTKNNR 125
Query: 159 A-AEYEPELHPGVTYRITRPKATLKIFSTGGITVTACN 195
A YEPELHP V YRI +ATL+IFSTG ITVT N
Sbjct: 126 PHASYEPELHPAVCYRIKSLRATLQIFSTGSITVTGPN 163
>gi|387018946|gb|AFJ51591.1| TATA box-binding protein-like protein 1 [Crotalus adamanteus]
Length = 183
Score = 204 bits (520), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 98/158 (62%), Positives = 119/158 (75%), Gaps = 1/158 (0%)
Query: 39 DPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYRRENGMVTMKLRKPYTTASIWSSGK 98
D +DI+I NVVC F RCHLNLR+IAL G NV Y+R+ G V MKLRKP TA+IWSSGK
Sbjct: 6 DVALDILITNVVCVFRTRCHLNLRKIALEGANVIYKRDVGKVLMKLRKPRITATIWSSGK 65
Query: 99 ITCTGATSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKHR 158
+ CTGATSE ++K ARR AR LQ+LGF+ FT+F+VVNVL C+MPF +R+ +F+ +R
Sbjct: 66 VICTGATSEAEAKFGARRLARSLQKLGFQVIFTDFKVVNVLAVCNMPFEVRLPEFTRNNR 125
Query: 159 A-AEYEPELHPGVTYRITRPKATLKIFSTGGITVTACN 195
A YEPELHP V YRI +ATL+IFSTG ITVT N
Sbjct: 126 PHASYEPELHPAVCYRIKTLRATLQIFSTGSITVTGPN 163
>gi|195143693|ref|XP_002012832.1| GL23716 [Drosophila persimilis]
gi|194101775|gb|EDW23818.1| GL23716 [Drosophila persimilis]
Length = 640
Score = 197 bits (500), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 98/182 (53%), Positives = 126/182 (69%), Gaps = 2/182 (1%)
Query: 15 EQEPPPTQTVVPIQNHAPPQPPAHDPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYR 74
E + P T + + +H A DP+++I+I NVVCSF+V C L+L IA G NV+Y
Sbjct: 210 EPDAPVTDEPLALLSHQKTAAEADDPKLNILIRNVVCSFNVGCQLDLSDIAQRGFNVKYH 269
Query: 75 RENGMVTMKLRKPYTTASIWSSGKITCTGATSEDQSKIAARRYARCLQRLGFKARFTNFR 134
R + TMKLR+P TA IWSSG+I CTG TSE +K+AARR+ARCL +LGF RF NFR
Sbjct: 270 RSRNL-TMKLRRPAATALIWSSGRINCTGTTSEILAKVAARRFARCLWKLGFPTRFQNFR 328
Query: 135 VVNVLGTCSMPFAIRILQFSEKH-RAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTA 193
+ VLGTC MP+ I I+ FS+KH A+ EPE+H VTY++ PKATLKIF+TG ITV A
Sbjct: 329 IETVLGTCRMPWDINIVNFSKKHPENAKQEPEMHWCVTYKMQMPKATLKIFTTGSITVMA 388
Query: 194 CN 195
+
Sbjct: 389 AS 390
>gi|198450906|ref|XP_002137175.1| GA26713 [Drosophila pseudoobscura pseudoobscura]
gi|198131246|gb|EDY67733.1| GA26713 [Drosophila pseudoobscura pseudoobscura]
Length = 642
Score = 190 bits (483), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 95/181 (52%), Positives = 124/181 (68%), Gaps = 2/181 (1%)
Query: 15 EQEPPPTQTVVPIQNHAPPQPPAHDPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYR 74
E + P T + + +H A DP+++I+I NVVCSF+V C L+L IA G NV+Y
Sbjct: 210 EPDAPVTYEPLALLSHQKTAAEADDPKLNILIRNVVCSFNVGCQLDLSDIAQRGFNVKYH 269
Query: 75 RENGMVTMKLRKPYTTASIWSSGKITCTGATSEDQSKIAARRYARCLQRLGFKARFTNFR 134
+ + TMKLR+P TA IWSSG+I CTG TSE +K+AARR+ARCL +LGF F NFR
Sbjct: 270 KSRNL-TMKLRRPAATALIWSSGRINCTGTTSEILAKVAARRFARCLWKLGFPTSFQNFR 328
Query: 135 VVNVLGTCSMPFAIRILQFSEKH-RAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTA 193
+ VLGTC MP+ I I+ FS+KH A+ +PE+H VTY++ PKATLKIF+TG ITV A
Sbjct: 329 IETVLGTCRMPWDINIVNFSKKHPENAKQDPEMHWCVTYKMQMPKATLKIFTTGSITVMA 388
Query: 194 C 194
Sbjct: 389 A 389
>gi|148672814|gb|EDL04761.1| TATA box binding protein-like 1, isoform CRA_b [Mus musculus]
Length = 206
Score = 188 bits (477), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 91/141 (64%), Positives = 110/141 (78%), Gaps = 1/141 (0%)
Query: 56 RCHLNLRQIALNGVNVEYRRENGMVTMKLRKPYTTASIWSSGKITCTGATSEDQSKIAAR 115
RCHLNLR+IAL G NV Y+R+ G V MKLRKP TA+IWSSGKI CTGATSE+++K AR
Sbjct: 43 RCHLNLRKIALEGANVIYKRDVGKVLMKLRKPRITATIWSSGKIICTGATSEEEAKFGAR 102
Query: 116 RYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKHRA-AEYEPELHPGVTYRI 174
R AR LQ+LGF+ FT+F+VVNVL C+MPF IR+ +F++ +R A YEPELHP V YRI
Sbjct: 103 RLARSLQKLGFQVIFTDFKVVNVLAVCNMPFEIRLPEFTKNNRPHASYEPELHPAVCYRI 162
Query: 175 TRPKATLKIFSTGGITVTACN 195
+ATL+IFSTG ITVT N
Sbjct: 163 KSLRATLQIFSTGSITVTGPN 183
>gi|149032877|gb|EDL87732.1| rCG41948, isoform CRA_a [Rattus norvegicus]
Length = 238
Score = 187 bits (475), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 90/138 (65%), Positives = 109/138 (78%), Gaps = 1/138 (0%)
Query: 56 RCHLNLRQIALNGVNVEYRRENGMVTMKLRKPYTTASIWSSGKITCTGATSEDQSKIAAR 115
RCHLNLR+IAL G NV Y+R+ G V MKLRKP TA+IWSSGKI CTGATSE+++K AR
Sbjct: 43 RCHLNLRKIALEGANVIYKRDVGKVLMKLRKPRITATIWSSGKIICTGATSEEEAKFGAR 102
Query: 116 RYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKHR-AAEYEPELHPGVTYRI 174
R AR LQ+LGF+ FT+F+VVNVL C+MPF IR+ +F++ +R A YEPELHP V YRI
Sbjct: 103 RLARSLQKLGFQVIFTDFKVVNVLAVCNMPFEIRLPEFTKNNRPHASYEPELHPAVCYRI 162
Query: 175 TRPKATLKIFSTGGITVT 192
+ATL+IFSTG ITVT
Sbjct: 163 KSLRATLQIFSTGSITVT 180
>gi|410916461|ref|XP_003971705.1| PREDICTED: TATA box-binding protein-like protein 1-like [Takifugu
rubripes]
Length = 185
Score = 187 bits (475), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 86/157 (54%), Positives = 115/157 (73%), Gaps = 1/157 (0%)
Query: 38 HDPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYRRENGMVTMKLRKPYTTASIWSSG 97
++ E+D+II NVV +F C LNL I G NV Y G VTM+LRKP TASIW+SG
Sbjct: 5 NEGELDVIICNVVATFRTGCRLNLHTIGSKGKNVIYNTRRGKVTMQLRKPRITASIWASG 64
Query: 98 KITCTGATSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKH 157
K+ C GA+SED++K+ ARR ARCLQ+LGFK +F+ F+VVNV+ CSMPF I ++ F++K+
Sbjct: 65 KVICIGASSEDEAKLGARRIARCLQKLGFKVKFSAFKVVNVMAGCSMPFKISLIDFTKKN 124
Query: 158 R-AAEYEPELHPGVTYRITRPKATLKIFSTGGITVTA 193
R A YEPEL+P Y + +PKAT+K+FSTG +T+ A
Sbjct: 125 RPIATYEPELYPAAMYTMRQPKATIKVFSTGSVTILA 161
>gi|198429838|ref|XP_002128047.1| PREDICTED: similar to TBP-like factor [Ciona intestinalis]
Length = 471
Score = 185 bits (469), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 92/176 (52%), Positives = 121/176 (68%), Gaps = 6/176 (3%)
Query: 24 VVPIQNHAPPQPPAHD----PEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYRRENGM 79
+VP+ P D +++I + NVV SF V CHLNLRQIAL G++V YRRE
Sbjct: 252 IVPVVKEEPLMYSNFDLQDGSKLNISVCNVVSSFRVHCHLNLRQIALEGMDVVYRRETQK 311
Query: 80 VTMKLRKPYTTASIWSSGKITCTGATSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVL 139
V M++R P TA +WSSGKI CTG++S ++ +A+R+AR L ++GFK +F FRVVNVL
Sbjct: 312 VVMRMRNPKCTAYMWSSGKIVCTGSSSAQYARQSAKRFARRLLKIGFKVKFAEFRVVNVL 371
Query: 140 GTCSMPFAIRILQFSEKHRA--AEYEPELHPGVTYRITRPKATLKIFSTGGITVTA 193
C MP+AI I +F++ +R YEPELHPGVT+R + KATLKIFSTG +TVTA
Sbjct: 372 AVCKMPYAIDINEFAKANRGRHCSYEPELHPGVTFRESTTKATLKIFSTGSVTVTA 427
>gi|47224247|emb|CAG09093.1| unnamed protein product [Tetraodon nigroviridis]
Length = 185
Score = 178 bits (452), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 82/155 (52%), Positives = 113/155 (72%), Gaps = 1/155 (0%)
Query: 38 HDPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYRRENGMVTMKLRKPYTTASIWSSG 97
+ E+D+ I+NVV +F CHLNL IA NG NV +R E G VTM+LRKP TA+IWSSG
Sbjct: 5 EEEELDVTISNVVATFRTGCHLNLYAIACNGHNVIHRPERGTVTMQLRKPRVTANIWSSG 64
Query: 98 KITCTGATSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKH 157
K+ CTGATSE ++K+ ARR ARC+Q+L F F+ F+VVNV+ T +MPF I ++ F++++
Sbjct: 65 KVICTGATSEQEAKMGARRIARCVQKLNFPVSFSAFKVVNVMVTSAMPFKISLIDFTKRN 124
Query: 158 R-AAEYEPELHPGVTYRITRPKATLKIFSTGGITV 191
R YEPELHP Y + PKAT+++F+TG +T+
Sbjct: 125 RPVTRYEPELHPAAMYTMRHPKATVRVFATGSVTI 159
>gi|410916287|ref|XP_003971618.1| PREDICTED: TATA box-binding protein-like protein 1-like [Takifugu
rubripes]
Length = 185
Score = 176 bits (446), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 82/162 (50%), Positives = 113/162 (69%), Gaps = 1/162 (0%)
Query: 38 HDPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYRRENGMVTMKLRKPYTTASIWSSG 97
++ E+D+II+NVV +F+ C L+L I G NV Y+ + G VTM+LRKP TA+IW+SG
Sbjct: 5 NEGELDVIISNVVATFTTGCRLDLHTIGSKGKNVIYKPKQGTVTMQLRKPRITANIWASG 64
Query: 98 KITCTGATSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKH 157
K+ C GA+SE +K+ ARR ARCLQ+LGF F F+VVNV+ TCSMPF I ++ F+ +
Sbjct: 65 KVICIGASSEADAKLGARRIARCLQKLGFGVTFGTFKVVNVMATCSMPFKISLVDFTMMN 124
Query: 158 RA-AEYEPELHPGVTYRITRPKATLKIFSTGGITVTACNDSN 198
R A YEPELHP Y + PKAT+K ++TG +T+ A + N
Sbjct: 125 RFRATYEPELHPAALYTMKEPKATIKAYATGSVTILAPSMGN 166
>gi|390355496|ref|XP_001181127.2| PREDICTED: uncharacterized protein LOC753078 [Strongylocentrotus
purpuratus]
Length = 445
Score = 174 bits (441), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 84/163 (51%), Positives = 114/163 (69%), Gaps = 2/163 (1%)
Query: 38 HDPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYRRENGMVTMKLRKPYTTASIWSSG 97
++P VDI INNVVC+F VRCHLNLR+I G NVEYRRE G V M+ R+P TA+IWSSG
Sbjct: 94 NEPSVDIYINNVVCAFGVRCHLNLRRIGQYGSNVEYRREYGKVNMRFRRPSATATIWSSG 153
Query: 98 KITCTGATSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKH 157
KI G SE+ ++ AR+ AR L ++ F RF ++VVN+ GT +PFAI I +F+++H
Sbjct: 154 KIIIRGNDSEEHAEQTARKCARELNKIDFNVRFLEYKVVNIFGTYLVPFAIDIWEFAKEH 213
Query: 158 R-AAEYEPELHPGVTYRITRP-KATLKIFSTGGITVTACNDSN 198
+ A Y+P HP Y++ +P KAT+ I+ TG ITV A ++SN
Sbjct: 214 QNDASYDPVNHPAAKYKLDQPFKATILIYHTGTITVIAQSESN 256
>gi|308321546|gb|ADO27924.1| tata box-binding protein-like protein 1 [Ictalurus furcatus]
Length = 118
Score = 167 bits (424), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 78/116 (67%), Positives = 91/116 (78%)
Query: 36 PAHDPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYRRENGMVTMKLRKPYTTASIWS 95
P++D +DIII NVV F RCHLNLR I L G NV YR E G V MKLRKP TASIWS
Sbjct: 3 PSNDVTLDIIITNVVSVFRTRCHLNLRTIGLEGNNVIYRPEVGKVLMKLRKPRITASIWS 62
Query: 96 SGKITCTGATSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRIL 151
SGKI CTGATSED++K+ ARR ARCLQ++GFK RF++F+VVNVL CSMPF IR++
Sbjct: 63 SGKIICTGATSEDEAKVGARRLARCLQKIGFKVRFSDFKVVNVLAVCSMPFQIRLI 118
>gi|119568383|gb|EAW47998.1| TBP-like 1, isoform CRA_c [Homo sapiens]
Length = 129
Score = 164 bits (415), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 75/120 (62%), Positives = 94/120 (78%)
Query: 39 DPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYRRENGMVTMKLRKPYTTASIWSSGK 98
D +DI+I NVVC F RCHLNLR+IAL G NV Y+R+ G V MKLRKP TA+IWSSGK
Sbjct: 6 DVALDILITNVVCVFRTRCHLNLRKIALEGANVIYKRDVGKVLMKLRKPRITATIWSSGK 65
Query: 99 ITCTGATSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKHR 158
I CTGATSE+++K ARR AR LQ+LGF+ FT+F+VVNVL C+MPF IR+ +F++ +R
Sbjct: 66 IICTGATSEEEAKFGARRLARSLQKLGFQVIFTDFKVVNVLAVCNMPFEIRLPEFTKNNR 125
>gi|39979630|ref|NP_951014.1| TATA box-binding protein-like protein 2 [Mus musculus]
gi|81870779|sp|Q6SJ95.1|TBPL2_MOUSE RecName: Full=TATA box-binding protein-like protein 2;
Short=TBP-like protein 2; AltName: Full=TATA box-binding
protein-related factor 3; Short=TBP-related factor 3
gi|38569211|gb|AAR24282.1| TBP-related factor 3 [Mus musculus]
gi|111600530|gb|AAI19161.1| TATA box binding protein like 2 [Mus musculus]
Length = 350
Score = 156 bits (394), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 80/198 (40%), Positives = 124/198 (62%), Gaps = 8/198 (4%)
Query: 11 SSHSEQEPP--PTQTVVPIQNHAPPQPPAHDPEVDIII---NNVVCSFSVRCHLNLRQIA 65
+HS Q P P +P+ A P P I+ NVV + ++ C L+LR+IA
Sbjct: 136 DAHSNQPSPETPNSNALPVALIASMMPMNPVPGFSGIVPQLQNVVSTANLACKLDLRKIA 195
Query: 66 LNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGATSEDQSKIAARRYARCLQRL 124
LN N EY + V M++R+P TTA I+SSGK+ CTGA SE++S++AAR+YAR +Q+L
Sbjct: 196 LNAKNTEYNPKRFAAVIMRIREPRTTALIFSSGKVVCTGAKSEEESRLAARKYARVVQKL 255
Query: 125 GFKARFTNFRVVNVLGTCSMPFAIR--ILQFSEKHRAAEYEPELHPGVTYRITRPKATLK 182
GF RF NF++ N++G+C + F IR IL + + ++ YEPEL PG+ Y++ +P+ L
Sbjct: 256 GFPVRFFNFKIQNMVGSCDVKFPIRLEILALTHRQFSSSYEPELFPGLIYKMVKPQVVLL 315
Query: 183 IFSTGGITVTACNDSNKI 200
IF++G + +T + ++I
Sbjct: 316 IFASGKVVLTGAKERSEI 333
>gi|313229000|emb|CBY18152.1| unnamed protein product [Oikopleura dioica]
Length = 342
Score = 156 bits (394), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 80/155 (51%), Positives = 105/155 (67%), Gaps = 4/155 (2%)
Query: 44 IIINNVVCSFSVRCHLNLRQIALNGVNVEYRRENGMVTMKLRKPYTTASIWSSGKITCTG 103
I I+NVV +F RCHLNLR IA +V Y+R+ G + MKLR+P A+IWSSGKI C G
Sbjct: 126 ITISNVVSNFRCRCHLNLRLIAAKTKHVVYKRDQGKLMMKLRQPQMMANIWSSGKIVCQG 185
Query: 104 ATSEDQSKIAARRYARCLQRLGF-KARFTNFRVVNVLGTCSMPFAIRILQFSEKHRAAE- 161
A SE +K +R +AR +Q+ GF + +N+RVVNVLG C +PFA+ I+QFS ++
Sbjct: 186 AKSEQDAKKGSRTFARMIQQSGFPNVKVSNYRVVNVLGNCRVPFALDIMQFSIENSGPNL 245
Query: 162 -YEPELHPGVTYRITRPKATLKIFSTGGITVTACN 195
YEPELHP VT+R AT+KIFSTG +T+ N
Sbjct: 246 TYEPELHPAVTFRPGN-GATVKIFSTGALTILGRN 279
>gi|72679753|gb|AAI00306.1| TATA box binding protein like 2 [Mus musculus]
gi|148910845|tpg|DAA06033.1| TPA_inf: TATA box binding protein-like 2 [Mus musculus]
gi|219520477|gb|AAI44905.1| Tbpl2 protein [Mus musculus]
Length = 349
Score = 155 bits (392), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 80/197 (40%), Positives = 123/197 (62%), Gaps = 7/197 (3%)
Query: 11 SSHSEQEPP--PTQTVVPIQNHAPPQPPAHDPEVDIII---NNVVCSFSVRCHLNLRQIA 65
+HS Q P P +P+ A P P I+ NVV + ++ C L+LR+IA
Sbjct: 136 DAHSNQPSPETPNSNALPVALIASMMPMNPVPGFSGIVPQLQNVVSTANLACKLDLRKIA 195
Query: 66 LNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGATSEDQSKIAARRYARCLQRL 124
LN N EY + V M++R+P TTA I+SSGK+ CTGA SE++S++AAR+YAR +Q+L
Sbjct: 196 LNAKNTEYNPKRFAAVIMRIREPRTTALIFSSGKVVCTGAKSEEESRLAARKYARVVQKL 255
Query: 125 GFKARFTNFRVVNVLGTCSMPFAIRILQFSEKHRA-AEYEPELHPGVTYRITRPKATLKI 183
GF RF NF++ N++G+C + F IR+ + HR + YEPEL PG+ Y++ +P+ L I
Sbjct: 256 GFPVRFFNFKIQNMVGSCDVKFPIRLEILALTHRQFSSYEPELFPGLIYKMVKPQVVLLI 315
Query: 184 FSTGGITVTACNDSNKI 200
F++G + +T + ++I
Sbjct: 316 FASGKVVLTGAKERSEI 332
>gi|354503979|ref|XP_003514057.1| PREDICTED: TATA box-binding protein-like protein 2-like [Cricetulus
griseus]
Length = 350
Score = 155 bits (392), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 69/158 (43%), Positives = 111/158 (70%), Gaps = 3/158 (1%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGA 104
+ NVV + ++ C L+LR+IALN N EY + V M++R+P TTA ++SSGK+ CTGA
Sbjct: 176 LQNVVSTANLACKLDLRKIALNAKNTEYNPKRFAAVIMRIREPRTTALLFSSGKVVCTGA 235
Query: 105 TSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIR--ILQFSEKHRAAEY 162
SE++S++AAR+YAR +Q+LGF +F NF++ N++G+C + F IR IL + + ++ Y
Sbjct: 236 KSEEESRLAARKYARVVQKLGFPVKFFNFKIQNMVGSCDVKFPIRLEILALTHRQFSSSY 295
Query: 163 EPELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
EPEL PG+ Y++ RP+ L IF++G + +T + ++I
Sbjct: 296 EPELFPGLIYKMVRPQVVLLIFASGKVVLTGAKERSEI 333
>gi|148676212|gb|EDL08159.1| TBP-related factor 3 [Mus musculus]
Length = 208
Score = 155 bits (391), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 70/157 (44%), Positives = 110/157 (70%), Gaps = 2/157 (1%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGA 104
+ NVV + ++ C L+LR+IALN N EY + V M++R+P TTA I+SSGK+ CTGA
Sbjct: 35 LQNVVSTANLACKLDLRKIALNAKNTEYNPKRFAAVIMRIREPRTTALIFSSGKVVCTGA 94
Query: 105 TSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKHRA-AEYE 163
SE++S++AAR+YAR +Q+LGF RF NF++ N++G+C + F IR+ + HR + YE
Sbjct: 95 KSEEESRLAARKYARVVQKLGFPVRFFNFKIQNMVGSCDVKFPIRLEILALTHRQFSSYE 154
Query: 164 PELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
PEL PG+ Y++ +P+ L IF++G + +T + ++I
Sbjct: 155 PELFPGLIYKMVKPQVVLLIFASGKVVLTGAKERSEI 191
>gi|339251280|ref|XP_003373123.1| TATA-box-binding protein [Trichinella spiralis]
gi|316968993|gb|EFV53163.1| TATA-box-binding protein [Trichinella spiralis]
Length = 260
Score = 154 bits (390), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 80/202 (39%), Positives = 121/202 (59%), Gaps = 4/202 (1%)
Query: 1 MTTAGMTTTHSSHSEQEPPPTQTVVPIQNHAPPQPPAHDPEVDIIINNVVCSFSVRCHLN 60
MT + THSS + P + +P PP P + N+V + ++ C L+
Sbjct: 44 MTPMVGSVTHSSFTMSNQPTSVGSIP--AFLPPTPSVDTSMPVPQLQNIVSTVNLGCKLD 101
Query: 61 LRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGATSEDQSKIAARRYAR 119
L+QIAL N EY + V M++R+P TTA I+SSGK+ CTGA SED S++AAR+YAR
Sbjct: 102 LKQIALQARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKSEDLSRLAARKYAR 161
Query: 120 CLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKH-RAAEYEPELHPGVTYRITRPK 178
+Q+LGF A+F +F+V N++G+C + F I++ F H + + YEPEL PG+ YR+ +P+
Sbjct: 162 IVQKLGFDAKFMDFKVQNMVGSCDVRFPIQLESFCLTHSQFSAYEPELFPGLIYRMVKPR 221
Query: 179 ATLKIFSTGGITVTACNDSNKI 200
L IF +G + +T + I
Sbjct: 222 VVLLIFVSGKVVITGAKEKRDI 243
>gi|150247085|ref|NP_001092831.1| TATA box-binding protein-like protein 2 [Rattus norvegicus]
gi|166987367|sp|A6H909.1|TBPL2_RAT RecName: Full=TATA box-binding protein-like protein 2;
Short=TBP-like protein 2; AltName: Full=TATA box-binding
protein-related factor 3; Short=TBP-related factor 3
gi|148910847|tpg|DAA06034.1| TPA_inf: TATA box binding protein-like 2 [Rattus norvegicus]
Length = 344
Score = 154 bits (390), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 70/157 (44%), Positives = 109/157 (69%), Gaps = 2/157 (1%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGA 104
+ NVV + ++ C L+LR+IALN N EY + V M++R+P TTA I+SSGK+ CTGA
Sbjct: 171 LQNVVSTANLACKLDLRKIALNAKNTEYNPKRFAAVIMRIREPRTTALIFSSGKVVCTGA 230
Query: 105 TSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKHRA-AEYE 163
SED+S++AAR+YAR +Q+LGF RF NF++ N++ +C + F IR+ + HR + YE
Sbjct: 231 KSEDESRLAARKYARVVQKLGFPVRFFNFKIQNMVASCDVKFPIRLEILALTHRQFSSYE 290
Query: 164 PELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
PEL PG+ Y++ +P+ L IF++G + +T + ++I
Sbjct: 291 PELFPGLIYKMVKPQVVLLIFASGKVVLTGAKERSEI 327
>gi|241566250|ref|XP_002402125.1| TATA-box binding protein (TBP), component of TFII-D and TFIIIB,
putative [Ixodes scapularis]
gi|215499985|gb|EEC09479.1| TATA-box binding protein (TBP), component of TFII-D and TFIIIB,
putative [Ixodes scapularis]
Length = 286
Score = 154 bits (389), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 79/196 (40%), Positives = 121/196 (61%), Gaps = 10/196 (5%)
Query: 2 TTAGMTTTHSSHSEQEPPPTQTVVPIQNHAPPQPPAHDPEVDIIINNVVCSFSVRCHLNL 61
T G +T HSS P P T P P + DP + + N+V + ++ C L+L
Sbjct: 77 TPTGGSTPHSSVFPSTPGPPMT--------PITPASADPGIVPQLQNIVSTVNLGCKLDL 128
Query: 62 RQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGATSEDQSKIAARRYARC 120
++IAL+ N EY + V M++R+P TTA I+SSGK+ CTGA SE+QS++AAR+YAR
Sbjct: 129 KKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKSEEQSRLAARKYARI 188
Query: 121 LQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKH-RAAEYEPELHPGVTYRITRPKA 179
+Q+LGF A+F +F++ N++G+C + F IR+ H + + YEPEL PG+ YR+ +P+
Sbjct: 189 IQKLGFDAKFLDFKIQNMVGSCDVRFPIRLEGLVLTHSQFSSYEPELFPGLIYRMVKPRI 248
Query: 180 TLKIFSTGGITVTACN 195
L IF +G + +T
Sbjct: 249 VLLIFVSGKVVLTGAK 264
>gi|443688559|gb|ELT91221.1| hypothetical protein CAPTEDRAFT_209597 [Capitella teleta]
Length = 209
Score = 154 bits (388), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 75/191 (39%), Positives = 120/191 (62%), Gaps = 8/191 (4%)
Query: 18 PPPTQTVV------PIQNHAPPQPPAHDPEVDIIINNVVCSFSVRCHLNLRQIALNGVNV 71
PPP+ ++ P+ P P + + + N+VC+ ++ C L L++IAL+ N
Sbjct: 2 PPPSNSMYGSIPGGPLTPMNPATPASESSGIVPQLQNIVCTVNMACKLELKRIALHARNA 61
Query: 72 EYR-RENGMVTMKLRKPYTTASIWSSGKITCTGATSEDQSKIAARRYARCLQRLGFKARF 130
EY + V M++R+P TTA I+SSGK+ CTGA SEDQ+K+AAR+YAR +Q+LGF+A+F
Sbjct: 62 EYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKSEDQAKLAARKYARIVQKLGFEAKF 121
Query: 131 TNFRVVNVLGTCSMPFAIRILQFSEKH-RAAEYEPELHPGVTYRITRPKATLKIFSTGGI 189
+F++ N++G+C + F IR+ H + + YEPEL PG+ YR+ +P+ L IF +G +
Sbjct: 122 LDFKIQNMVGSCDVKFPIRLEGLVLTHSQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKV 181
Query: 190 TVTACNDSNKI 200
+T +I
Sbjct: 182 VLTGAKVRGEI 192
>gi|391336328|ref|XP_003742533.1| PREDICTED: TATA-box-binding protein-like [Metaseiulus occidentalis]
Length = 295
Score = 153 bits (387), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 73/172 (42%), Positives = 115/172 (66%), Gaps = 2/172 (1%)
Query: 31 APPQPPAHDPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYT 89
AP P + DP + + N+V + ++ C L+L++IAL N EY + V M++R+P T
Sbjct: 107 APQTPASVDPNIIPQLQNIVSTVNLGCRLDLKKIALQARNAEYNPKRFAAVIMRIREPRT 166
Query: 90 TASIWSSGKITCTGATSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIR 149
TA I+SSGK+ CTGA SEDQS++AAR+YAR +Q+LGF+A+F +F++ N++G+C + F IR
Sbjct: 167 TALIFSSGKMVCTGAKSEDQSRLAARKYARIVQKLGFEAKFLDFKIQNMVGSCDVRFPIR 226
Query: 150 ILQFSEKH-RAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
+ H + + YEPEL PG+ YR+ +P+ L IF +G + +T ++I
Sbjct: 227 LEGLVLTHCQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLTGAKVRSEI 278
>gi|125807343|ref|XP_001360369.1| GA22088 [Drosophila pseudoobscura pseudoobscura]
gi|195149788|ref|XP_002015837.1| GL11271 [Drosophila persimilis]
gi|54635541|gb|EAL24944.1| GA22088 [Drosophila pseudoobscura pseudoobscura]
gi|194109684|gb|EDW31727.1| GL11271 [Drosophila persimilis]
Length = 345
Score = 153 bits (387), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 75/181 (41%), Positives = 115/181 (63%), Gaps = 2/181 (1%)
Query: 22 QTVVPIQNHAPPQPPAHDPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMV 80
QT+ P P P + DP + + N+V + ++ C L+L++IAL+ N EY + V
Sbjct: 147 QTMGPATPMTPATPGSADPGIVPQLQNIVSTVNLCCKLDLKKIALHARNAEYNPKRFAAV 206
Query: 81 TMKLRKPYTTASIWSSGKITCTGATSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLG 140
M++R+P TTA I+SSGK+ CTGA SED S++AAR+YAR +Q+LGF A+F +F++ N++G
Sbjct: 207 IMRIREPRTTALIFSSGKMVCTGAKSEDDSRLAARKYARIIQKLGFPAKFLDFKIQNMVG 266
Query: 141 TCSMPFAIRILQFSEKH-RAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTACNDSNK 199
+C + F IR+ H + YEPEL PG+ YR+ RP+ L IF +G + +T +
Sbjct: 267 SCDVKFPIRLEGLVLTHCNFSSYEPELFPGLIYRMVRPRIVLLIFVSGKVVLTGAKVRQE 326
Query: 200 I 200
I
Sbjct: 327 I 327
>gi|224145959|ref|XP_002325828.1| global transcription factor group [Populus trichocarpa]
gi|222862703|gb|EEF00210.1| global transcription factor group [Populus trichocarpa]
Length = 201
Score = 153 bits (387), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 72/171 (42%), Positives = 110/171 (64%), Gaps = 2/171 (1%)
Query: 27 IQNHAPPQPPAHDPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLR 85
++ P H + I+ N+V + ++ C L+L+QIAL N EY + V M++R
Sbjct: 7 LEGSQPVDLSKHPSGIVPILQNIVSTVNLDCRLDLKQIALQARNAEYNPKRFAAVIMRIR 66
Query: 86 KPYTTASIWSSGKITCTGATSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMP 145
+P TTA I++SGK+ CTGA SE QSK+AAR+YAR +Q+LGF A+F +F++ N++G+C +
Sbjct: 67 EPKTTALIFASGKMVCTGAKSEQQSKLAARKYARIIQKLGFAAKFKDFKIQNIVGSCDVK 126
Query: 146 FAIRILQFSEKHRA-AEYEPELHPGVTYRITRPKATLKIFSTGGITVTACN 195
F IR+ + H A + YEPE+ PG+ YR+ +PK L IF +G I +T
Sbjct: 127 FPIRLEGLAYSHGAFSSYEPEIFPGLIYRMKQPKIVLLIFVSGKIVITGAK 177
Score = 36.2 bits (82), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 31/63 (49%)
Query: 137 NVLGTCSMPFAIRILQFSEKHRAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTACND 196
N++ T ++ + + Q + + R AEY P+ V RI PK T IF++G + T
Sbjct: 28 NIVSTVNLDCRLDLKQIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVCTGAKS 87
Query: 197 SNK 199
+
Sbjct: 88 EQQ 90
>gi|405952231|gb|EKC20068.1| TATA-box-binding protein [Crassostrea gigas]
Length = 452
Score = 153 bits (387), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 69/153 (45%), Positives = 107/153 (69%), Gaps = 2/153 (1%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGA 104
+ N+VC+ ++ C L+L++IAL+ N EY + V M++R+P TTA I+SSGK+ CTGA
Sbjct: 99 LQNIVCTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 158
Query: 105 TSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKH-RAAEYE 163
SEDQ+K+AAR+YAR +Q+LGF A+F +F++ N++G+C + F IR+ H + + YE
Sbjct: 159 KSEDQAKLAARKYARIVQKLGFAAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQFSSYE 218
Query: 164 PELHPGVTYRITRPKATLKIFSTGGITVTACND 196
PEL PG+ YR+ +P+ L IF +G + +T D
Sbjct: 219 PELFPGLIYRMVKPRIVLLIFVSGKVVLTGAKD 251
>gi|17647997|ref|NP_523805.1| TATA binding protein [Drosophila melanogaster]
gi|135636|sp|P20227.1|TBP_DROME RecName: Full=TATA-box-binding protein; AltName: Full=TATA
sequence-binding protein; AltName: Full=TATA-binding
factor; AltName: Full=TATA-box factor; AltName:
Full=Transcription initiation factor TFIID TBP subunit
gi|158532|gb|AAA28926.1| TATA-consensus-binding transcription factor TFII [Drosophila
melanogaster]
gi|158542|gb|AAA28931.1| TATA-box binding protein [Drosophila melanogaster]
gi|515665|gb|AAA68629.1| TATA-box binding protein [Drosophila melanogaster]
gi|7291324|gb|AAF46754.1| TATA binding protein [Drosophila melanogaster]
gi|17862662|gb|AAL39808.1| LD44083p [Drosophila melanogaster]
gi|220942262|gb|ACL83674.1| Tbp-PA [synthetic construct]
gi|220952470|gb|ACL88778.1| Tbp-PA [synthetic construct]
Length = 353
Score = 153 bits (387), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 75/181 (41%), Positives = 115/181 (63%), Gaps = 2/181 (1%)
Query: 22 QTVVPIQNHAPPQPPAHDPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMV 80
QT+ P P P + DP + + N+V + ++ C L+L++IAL+ N EY + V
Sbjct: 155 QTMGPSTPMTPATPGSADPGIVPQLQNIVSTVNLCCKLDLKKIALHARNAEYNPKRFAAV 214
Query: 81 TMKLRKPYTTASIWSSGKITCTGATSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLG 140
M++R+P TTA I+SSGK+ CTGA SED S++AAR+YAR +Q+LGF A+F +F++ N++G
Sbjct: 215 IMRIREPRTTALIFSSGKMVCTGAKSEDDSRLAARKYARIIQKLGFPAKFLDFKIQNMVG 274
Query: 141 TCSMPFAIRILQFSEKH-RAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTACNDSNK 199
+C + F IR+ H + YEPEL PG+ YR+ RP+ L IF +G + +T +
Sbjct: 275 SCDVKFPIRLEGLVLTHCNFSSYEPELFPGLIYRMVRPRIVLLIFVSGKVVLTGAKVRQE 334
Query: 200 I 200
I
Sbjct: 335 I 335
>gi|149039452|gb|EDL93672.1| rCG45623 [Rattus norvegicus]
Length = 190
Score = 153 bits (387), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 70/157 (44%), Positives = 109/157 (69%), Gaps = 2/157 (1%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGA 104
+ NVV + ++ C L+LR+IALN N EY + V M++R+P TTA I+SSGK+ CTGA
Sbjct: 17 LQNVVSTANLACKLDLRKIALNAKNTEYNPKRFAAVIMRIREPRTTALIFSSGKVVCTGA 76
Query: 105 TSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKHRA-AEYE 163
SED+S++AAR+YAR +Q+LGF RF NF++ N++ +C + F IR+ + HR + YE
Sbjct: 77 KSEDESRLAARKYARVVQKLGFPVRFFNFKIQNMVASCDVKFPIRLEILALTHRQFSSYE 136
Query: 164 PELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
PEL PG+ Y++ +P+ L IF++G + +T + ++I
Sbjct: 137 PELFPGLIYKMVKPQVVLLIFASGKVVLTGAKERSEI 173
>gi|1016266|gb|AAA79092.1| TATA-box binding protein [Drosophila melanogaster]
Length = 354
Score = 153 bits (386), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 75/181 (41%), Positives = 115/181 (63%), Gaps = 2/181 (1%)
Query: 22 QTVVPIQNHAPPQPPAHDPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMV 80
QT+ P P P + DP + + N+V + ++ C L+L++IAL+ N EY + V
Sbjct: 156 QTMGPSTPMTPATPGSADPGIVPQLQNIVSTVNLCCKLDLKKIALHARNAEYNPKRFAAV 215
Query: 81 TMKLRKPYTTASIWSSGKITCTGATSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLG 140
M++R+P TTA I+SSGK+ CTGA SED S++AAR+YAR +Q+LGF A+F +F++ N++G
Sbjct: 216 IMRIREPRTTALIFSSGKMVCTGAKSEDDSRLAARKYARIIQKLGFPAKFLDFKIQNMVG 275
Query: 141 TCSMPFAIRILQFSEKH-RAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTACNDSNK 199
+C + F IR+ H + YEPEL PG+ YR+ RP+ L IF +G + +T +
Sbjct: 276 SCDVKFPIRLEGLVLTHCNFSSYEPELFPGLIYRMVRPRIVLLIFVSGKVVLTGAKVRQE 335
Query: 200 I 200
I
Sbjct: 336 I 336
>gi|195057981|ref|XP_001995362.1| GH23121 [Drosophila grimshawi]
gi|193899568|gb|EDV98434.1| GH23121 [Drosophila grimshawi]
Length = 348
Score = 153 bits (386), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 75/181 (41%), Positives = 115/181 (63%), Gaps = 2/181 (1%)
Query: 22 QTVVPIQNHAPPQPPAHDPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMV 80
QT+ P P P + DP + + N+V + ++ C L+L++IAL+ N EY + V
Sbjct: 150 QTMGPSTPMTPATPGSADPGIVPQLQNIVSTVNLCCKLDLKKIALHARNAEYNPKRFAAV 209
Query: 81 TMKLRKPYTTASIWSSGKITCTGATSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLG 140
M++R+P TTA I+SSGK+ CTGA SED S++AAR+YAR +Q+LGF A+F +F++ N++G
Sbjct: 210 IMRIREPRTTALIFSSGKMVCTGAKSEDDSRLAARKYARIIQKLGFPAKFLDFKIQNMVG 269
Query: 141 TCSMPFAIRILQFSEKH-RAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTACNDSNK 199
+C + F IR+ H + YEPEL PG+ YR+ RP+ L IF +G + +T +
Sbjct: 270 SCDVKFPIRLEGLVLTHCNFSSYEPELFPGLIYRMVRPRIVLLIFVSGKVVLTGAKVRQE 329
Query: 200 I 200
I
Sbjct: 330 I 330
>gi|194881988|ref|XP_001975095.1| GG20753 [Drosophila erecta]
gi|190658282|gb|EDV55495.1| GG20753 [Drosophila erecta]
Length = 349
Score = 153 bits (386), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 75/181 (41%), Positives = 115/181 (63%), Gaps = 2/181 (1%)
Query: 22 QTVVPIQNHAPPQPPAHDPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMV 80
QT+ P P P + DP + + N+V + ++ C L+L++IAL+ N EY + V
Sbjct: 151 QTMGPSTPMTPATPGSADPGIVPQLQNIVSTVNLCCKLDLKKIALHARNAEYNPKRFAAV 210
Query: 81 TMKLRKPYTTASIWSSGKITCTGATSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLG 140
M++R+P TTA I+SSGK+ CTGA SED S++AAR+YAR +Q+LGF A+F +F++ N++G
Sbjct: 211 IMRIREPRTTALIFSSGKMVCTGAKSEDDSRLAARKYARIIQKLGFPAKFLDFKIQNMVG 270
Query: 141 TCSMPFAIRILQFSEKH-RAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTACNDSNK 199
+C + F IR+ H + YEPEL PG+ YR+ RP+ L IF +G + +T +
Sbjct: 271 SCDVKFPIRLEGLVLTHCNFSSYEPELFPGLIYRMVRPRIVLLIFVSGKVVLTGAKVRQE 330
Query: 200 I 200
I
Sbjct: 331 I 331
>gi|195486396|ref|XP_002091492.1| GE13685 [Drosophila yakuba]
gi|194177593|gb|EDW91204.1| GE13685 [Drosophila yakuba]
Length = 349
Score = 153 bits (386), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 75/181 (41%), Positives = 115/181 (63%), Gaps = 2/181 (1%)
Query: 22 QTVVPIQNHAPPQPPAHDPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMV 80
QT+ P P P + DP + + N+V + ++ C L+L++IAL+ N EY + V
Sbjct: 151 QTMGPSTPMTPATPGSADPGIVPQLQNIVSTVNLCCKLDLKKIALHARNAEYNPKRFAAV 210
Query: 81 TMKLRKPYTTASIWSSGKITCTGATSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLG 140
M++R+P TTA I+SSGK+ CTGA SED S++AAR+YAR +Q+LGF A+F +F++ N++G
Sbjct: 211 IMRIREPRTTALIFSSGKMVCTGAKSEDDSRLAARKYARIIQKLGFPAKFLDFKIQNMVG 270
Query: 141 TCSMPFAIRILQFSEKH-RAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTACNDSNK 199
+C + F IR+ H + YEPEL PG+ YR+ RP+ L IF +G + +T +
Sbjct: 271 SCDVKFPIRLEGLVLTHCNFSSYEPELFPGLIYRMVRPRIVLLIFVSGKVVLTGAKVRQE 330
Query: 200 I 200
I
Sbjct: 331 I 331
>gi|195585514|ref|XP_002082526.1| GD25175 [Drosophila simulans]
gi|194194535|gb|EDX08111.1| GD25175 [Drosophila simulans]
Length = 352
Score = 153 bits (386), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 75/181 (41%), Positives = 115/181 (63%), Gaps = 2/181 (1%)
Query: 22 QTVVPIQNHAPPQPPAHDPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMV 80
QT+ P P P + DP + + N+V + ++ C L+L++IAL+ N EY + V
Sbjct: 154 QTMGPSTPMTPATPGSADPGIVPQLQNIVSTVNLCCKLDLKKIALHARNAEYNPKRFAAV 213
Query: 81 TMKLRKPYTTASIWSSGKITCTGATSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLG 140
M++R+P TTA I+SSGK+ CTGA SED S++AAR+YAR +Q+LGF A+F +F++ N++G
Sbjct: 214 IMRIREPRTTALIFSSGKMVCTGAKSEDDSRLAARKYARIIQKLGFPAKFLDFKIQNMVG 273
Query: 141 TCSMPFAIRILQFSEKH-RAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTACNDSNK 199
+C + F IR+ H + YEPEL PG+ YR+ RP+ L IF +G + +T +
Sbjct: 274 SCDVKFPIRLEGLVLTHCNFSSYEPELFPGLIYRMVRPRIVLLIFVSGKVVLTGAKVRQE 333
Query: 200 I 200
I
Sbjct: 334 I 334
>gi|194755930|ref|XP_001960232.1| GF11627 [Drosophila ananassae]
gi|190621530|gb|EDV37054.1| GF11627 [Drosophila ananassae]
Length = 348
Score = 153 bits (386), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 75/181 (41%), Positives = 115/181 (63%), Gaps = 2/181 (1%)
Query: 22 QTVVPIQNHAPPQPPAHDPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMV 80
QT+ P P P + DP + + N+V + ++ C L+L++IAL+ N EY + V
Sbjct: 150 QTMGPSTPMTPATPGSADPGIVPQLQNIVSTVNLCCKLDLKKIALHARNAEYNPKRFAAV 209
Query: 81 TMKLRKPYTTASIWSSGKITCTGATSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLG 140
M++R+P TTA I+SSGK+ CTGA SED S++AAR+YAR +Q+LGF A+F +F++ N++G
Sbjct: 210 IMRIREPRTTALIFSSGKMVCTGAKSEDDSRLAARKYARIIQKLGFPAKFLDFKIQNMVG 269
Query: 141 TCSMPFAIRILQFSEKH-RAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTACNDSNK 199
+C + F IR+ H + YEPEL PG+ YR+ RP+ L IF +G + +T +
Sbjct: 270 SCDVKFPIRLEGLVLTHCNFSSYEPELFPGLIYRMVRPRIVLLIFVSGKVVLTGAKVRQE 329
Query: 200 I 200
I
Sbjct: 330 I 330
>gi|195346517|ref|XP_002039804.1| GM15696 [Drosophila sechellia]
gi|194135153|gb|EDW56669.1| GM15696 [Drosophila sechellia]
Length = 352
Score = 153 bits (386), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 75/181 (41%), Positives = 115/181 (63%), Gaps = 2/181 (1%)
Query: 22 QTVVPIQNHAPPQPPAHDPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMV 80
QT+ P P P + DP + + N+V + ++ C L+L++IAL+ N EY + V
Sbjct: 154 QTMGPSTPMTPATPGSADPGIVPQLQNIVSTVNLCCKLDLKKIALHARNAEYNPKRFAAV 213
Query: 81 TMKLRKPYTTASIWSSGKITCTGATSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLG 140
M++R+P TTA I+SSGK+ CTGA SED S++AAR+YAR +Q+LGF A+F +F++ N++G
Sbjct: 214 IMRIREPRTTALIFSSGKMVCTGAKSEDSSRLAARKYARIIQKLGFPAKFLDFKIQNMVG 273
Query: 141 TCSMPFAIRILQFSEKH-RAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTACNDSNK 199
+C + F IR+ H + YEPEL PG+ YR+ RP+ L IF +G + +T +
Sbjct: 274 SCDVKFPIRLEGLVLTHCNFSSYEPELFPGLIYRMVRPRIVLLIFVSGKVVLTGAKVRQE 333
Query: 200 I 200
I
Sbjct: 334 I 334
>gi|195403015|ref|XP_002060091.1| GJ14917 [Drosophila virilis]
gi|194149413|gb|EDW65108.1| GJ14917 [Drosophila virilis]
Length = 352
Score = 153 bits (386), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 75/181 (41%), Positives = 115/181 (63%), Gaps = 2/181 (1%)
Query: 22 QTVVPIQNHAPPQPPAHDPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMV 80
QT+ P P P + DP + + N+V + ++ C L+L++IAL+ N EY + V
Sbjct: 154 QTMGPSTPMTPATPGSADPGIVPQLQNIVSTVNLCCKLDLKKIALHARNAEYNPKRFAAV 213
Query: 81 TMKLRKPYTTASIWSSGKITCTGATSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLG 140
M++R+P TTA I+SSGK+ CTGA SED S++AAR+YAR +Q+LGF A+F +F++ N++G
Sbjct: 214 IMRIREPRTTALIFSSGKMVCTGAKSEDDSRLAARKYARIIQKLGFPAKFLDFKIQNMVG 273
Query: 141 TCSMPFAIRILQFSEKH-RAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTACNDSNK 199
+C + F IR+ H + YEPEL PG+ YR+ RP+ L IF +G + +T +
Sbjct: 274 SCDVKFPIRLEGLVLTHCNFSSYEPELFPGLIYRMVRPRIVLLIFVSGKVVLTGAKVRQE 333
Query: 200 I 200
I
Sbjct: 334 I 334
>gi|195380351|ref|XP_002048934.1| Tbp [Drosophila virilis]
gi|194143731|gb|EDW60127.1| Tbp [Drosophila virilis]
Length = 351
Score = 153 bits (386), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 75/181 (41%), Positives = 115/181 (63%), Gaps = 2/181 (1%)
Query: 22 QTVVPIQNHAPPQPPAHDPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMV 80
QT+ P P P + DP + + N+V + ++ C L+L++IAL+ N EY + V
Sbjct: 153 QTMGPSTPMTPATPGSADPGIVPQLQNIVSTVNLCCKLDLKKIALHARNAEYNPKRFAAV 212
Query: 81 TMKLRKPYTTASIWSSGKITCTGATSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLG 140
M++R+P TTA I+SSGK+ CTGA SED S++AAR+YAR +Q+LGF A+F +F++ N++G
Sbjct: 213 IMRIREPRTTALIFSSGKMVCTGAKSEDDSRLAARKYARIIQKLGFPAKFLDFKIQNMVG 272
Query: 141 TCSMPFAIRILQFSEKH-RAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTACNDSNK 199
+C + F IR+ H + YEPEL PG+ YR+ RP+ L IF +G + +T +
Sbjct: 273 SCDVKFPIRLEGLVLTHCNFSSYEPELFPGLIYRMVRPRIVLLIFVSGKVVLTGAKVRQE 332
Query: 200 I 200
I
Sbjct: 333 I 333
>gi|195425556|ref|XP_002061064.1| GK10649 [Drosophila willistoni]
gi|194157149|gb|EDW72050.1| GK10649 [Drosophila willistoni]
Length = 351
Score = 153 bits (386), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 75/181 (41%), Positives = 115/181 (63%), Gaps = 2/181 (1%)
Query: 22 QTVVPIQNHAPPQPPAHDPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMV 80
QT+ P P P + DP + + N+V + ++ C L+L++IAL+ N EY + V
Sbjct: 153 QTMGPSTPMTPATPGSADPGIVPQLQNIVSTVNLCCKLDLKKIALHARNAEYNPKRFAAV 212
Query: 81 TMKLRKPYTTASIWSSGKITCTGATSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLG 140
M++R+P TTA I+SSGK+ CTGA SED S++AAR+YAR +Q+LGF A+F +F++ N++G
Sbjct: 213 IMRIREPRTTALIFSSGKMVCTGAKSEDDSRLAARKYARIIQKLGFPAKFMDFKIQNMVG 272
Query: 141 TCSMPFAIRILQFSEKH-RAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTACNDSNK 199
+C + F IR+ H + YEPEL PG+ YR+ RP+ L IF +G + +T +
Sbjct: 273 SCDVKFPIRLEGLVLTHCNFSSYEPELFPGLIYRMVRPRIVLLIFVSGKVVLTGAKVRQE 332
Query: 200 I 200
I
Sbjct: 333 I 333
>gi|112983068|ref|NP_001037059.1| TATA-box-binding protein [Bombyx mori]
gi|14423945|sp|O45211.1|TBP_BOMMO RecName: Full=TATA-box-binding protein; AltName: Full=TATA
sequence-binding protein; AltName: Full=TATA-binding
factor; AltName: Full=TATA-box factor; AltName:
Full=Transcription initiation factor TFIID TBP subunit
gi|3326928|emb|CAA11000.1| TBP [Bombyx mori]
Length = 307
Score = 152 bits (385), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 75/202 (37%), Positives = 122/202 (60%), Gaps = 11/202 (5%)
Query: 1 MTTAGMTTTHSSHSEQEPPPTQTVVPIQNHAPPQPPAHDPEVDIIINNVVCSFSVRCHLN 60
M AG ++ S+ P P + P+ + DP + + N+V + ++ C L+
Sbjct: 98 MIAAGNLSSQQMLSQASPAPMTPLTPL---------SADPGILPQLQNIVSTVNLDCKLD 148
Query: 61 LRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGATSEDQSKIAARRYAR 119
L++IAL+ N EY + V M++R+P TTA I+SSGK+ CTGA SE+ S++AAR+YAR
Sbjct: 149 LKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYAR 208
Query: 120 CLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKH-RAAEYEPELHPGVTYRITRPK 178
+Q+LGF A+F +F++ N++G+C + F IR+ H + + YEPEL PG+ YR+ +P+
Sbjct: 209 IIQKLGFTAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPR 268
Query: 179 ATLKIFSTGGITVTACNDSNKI 200
L IF +G + +T +I
Sbjct: 269 IVLLIFVSGKVVLTGAKVREEI 290
>gi|290994623|ref|XP_002679931.1| TATA-box binding protein [Naegleria gruberi]
gi|284093550|gb|EFC47187.1| TATA-box binding protein [Naegleria gruberi]
Length = 318
Score = 152 bits (385), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 82/203 (40%), Positives = 121/203 (59%), Gaps = 13/203 (6%)
Query: 5 GMTTTHSSHSEQEPPPTQTVVPIQNHAPPQPPAHDPEVDI-----IINNVVCSFSVRCHL 59
GM T+ E PP T T P+ N P PE+D +I NVV + ++ C L
Sbjct: 95 GMNTSR----EMGPPTTST--PMPNQYASTPSNQVPELDSGGIIPVIQNVVSTVNLACEL 148
Query: 60 NLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGATSEDQSKIAARRYA 118
L+ IAL+ N EY + V M++R+P TTA I+ SGK+ TGA SE++S++AAR+YA
Sbjct: 149 KLKMIALHARNAEYNPKRFAAVIMRIREPKTTALIFQSGKMVVTGAKSEEESRLAARKYA 208
Query: 119 RCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFS-EKHRAAEYEPELHPGVTYRITRP 177
R +Q+LGF A+FT F++ N++G+C + F +R+ + + H A YEPE+ PG+ YR+ P
Sbjct: 209 RIIQKLGFNAKFTEFKIQNIVGSCDVGFPVRLEGLNCQHHSYASYEPEIFPGLIYRMVDP 268
Query: 178 KATLKIFSTGGITVTACNDSNKI 200
K L IF +G I +T + I
Sbjct: 269 KVVLLIFVSGKIVLTGAKHRDTI 291
>gi|225719098|gb|ACO15395.1| TATA-box-binding protein [Caligus clemensi]
Length = 323
Score = 152 bits (385), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 78/183 (42%), Positives = 117/183 (63%), Gaps = 8/183 (4%)
Query: 26 PIQNHAPP-----QPPAH-DPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYR-RENG 78
PI + AP QPP DP + + N+V + S+ C L+L++IAL+ N EY +
Sbjct: 124 PIASPAPATPLSLQPPGSMDPGIVPQLQNIVSTVSLGCKLDLKKIALHARNAEYNPKRFA 183
Query: 79 MVTMKLRKPYTTASIWSSGKITCTGATSEDQSKIAARRYARCLQRLGFKARFTNFRVVNV 138
V M++R+P TTA I+SSGK+ CTGA SE+ S++AAR+YAR +Q+LGF ARF +F++ N+
Sbjct: 184 AVIMRIREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIVQKLGFPARFKDFKIQNM 243
Query: 139 LGTCSMPFAIRILQFSEKH-RAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTACNDS 197
+G+C + F IR+ H + + YEPEL PG+ YR+ RP+ L IF +G + +T
Sbjct: 244 VGSCDVKFPIRLEGLVLTHSQFSSYEPELFPGLIYRMVRPRIVLLIFVSGKVVLTGAKVR 303
Query: 198 NKI 200
+I
Sbjct: 304 QEI 306
>gi|254566373|ref|XP_002490297.1| TATA-binding protein, general transcription factor [Komagataella
pastoris GS115]
gi|238030093|emb|CAY68016.1| TATA-binding protein, general transcription factor [Komagataella
pastoris GS115]
gi|328350692|emb|CCA37092.1| TATA-box-binding protein [Komagataella pastoris CBS 7435]
Length = 243
Score = 152 bits (384), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 71/158 (44%), Positives = 108/158 (68%), Gaps = 4/158 (2%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGA 104
+ N+V + ++ C L+L+ IAL+ N EY + V M++R+P TTA I++SGK+ TGA
Sbjct: 70 LQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGA 129
Query: 105 TSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRI--LQFSEKHRAAEY 162
SED SK+A+R+YAR +Q+LGF A+FT+F++ N++G+C + F IR+ L FS H ++ Y
Sbjct: 130 KSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDVKFPIRLEGLAFSHGHFSS-Y 188
Query: 163 EPELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
EPEL PG+ YR+ +PK L IF +G I +T +I
Sbjct: 189 EPELFPGLIYRMVKPKIVLLIFVSGKIVLTGAKKREEI 226
>gi|255568956|ref|XP_002525448.1| TATA-box binding protein, putative [Ricinus communis]
gi|223535261|gb|EEF36938.1| TATA-box binding protein, putative [Ricinus communis]
Length = 201
Score = 152 bits (384), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 70/152 (46%), Positives = 104/152 (68%), Gaps = 2/152 (1%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGA 104
+ N+V + ++ C L+L+QIAL N EY + V M++R+P TTA I++SGK+ CTGA
Sbjct: 26 LQNIVSTVNLDCKLDLKQIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVCTGA 85
Query: 105 TSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKHRA-AEYE 163
SE QSK+AAR+YAR +Q+LGF A+F +F++ N++G+C + F IR+ + H A + YE
Sbjct: 86 KSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYE 145
Query: 164 PELHPGVTYRITRPKATLKIFSTGGITVTACN 195
PEL PG+ YR+ +PK L IF +G I +T
Sbjct: 146 PELFPGLIYRMKQPKIVLLIFVSGKIVITGAK 177
Score = 36.6 bits (83), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 31/63 (49%)
Query: 137 NVLGTCSMPFAIRILQFSEKHRAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTACND 196
N++ T ++ + + Q + + R AEY P+ V RI PK T IF++G + T
Sbjct: 28 NIVSTVNLDCKLDLKQIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVCTGAKS 87
Query: 197 SNK 199
+
Sbjct: 88 EQQ 90
>gi|296482511|tpg|DAA24626.1| TPA: TBP protein-like [Bos taurus]
Length = 303
Score = 152 bits (384), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 74/185 (40%), Positives = 118/185 (63%), Gaps = 5/185 (2%)
Query: 18 PPPTQTVVPIQNHAPPQPPAHDPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYR-RE 76
P P ++P+ P P + E+ ++NVVC+ ++ C L+L+ IAL N EY +
Sbjct: 104 PSPMTPMIPM---TPAMPASEIAELVPQLHNVVCTVNLGCKLDLKSIALLARNAEYNPKR 160
Query: 77 NGMVTMKLRKPYTTASIWSSGKITCTGATSEDQSKIAARRYARCLQRLGFKARFTNFRVV 136
V M++R+P TTA ++SSGK+ CTG SE+QS++AAR+YAR +Q+LGF A+F +F++
Sbjct: 161 FAAVIMRIREPRTTALLFSSGKMVCTGGKSEEQSRLAARKYARIIQKLGFPAKFLDFKIQ 220
Query: 137 NVLGTCSMPFAIRILQFSEKHRA-AEYEPELHPGVTYRITRPKATLKIFSTGGITVTACN 195
N++G+C + F IR+ H+ A YEPEL PG+ YR+ +P+ L IF +G + +T
Sbjct: 221 NMVGSCDVKFPIRLEPLVLSHQQFASYEPELFPGLVYRMIKPRIVLLIFVSGKVVLTGAK 280
Query: 196 DSNKI 200
++I
Sbjct: 281 VRSEI 285
>gi|453083461|gb|EMF11507.1| transcription initiation factor TFIID, TATA binding protein
[Mycosphaerella populorum SO2202]
Length = 258
Score = 152 bits (383), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 81/209 (38%), Positives = 126/209 (60%), Gaps = 16/209 (7%)
Query: 2 TTAGMTTTHSSHSEQEPPPTQTVVPIQNHAPPQPPAHDPE-----VDIII---NNVVCSF 53
+ AG T+ + ++ +Q+ VV N P PA P V I+ N+V +
Sbjct: 39 SDAGQTSKNGTNGQQQ------VVAQGNGVTPATPAATPGQANTGVSGIVPTLQNIVATV 92
Query: 54 SVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGATSEDQSKI 112
++ C L+L+ IAL+ N EY + V M++R+P TTA I++SGK+ TGA SED SK+
Sbjct: 93 NLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGAKSEDDSKL 152
Query: 113 AARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKHRA-AEYEPELHPGVT 171
A+R+YAR +Q+LGF A+FT+F++ N++G+C + F IR+ + +H + YEPEL PG+
Sbjct: 153 ASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASRHHMFSSYEPELFPGLI 212
Query: 172 YRITRPKATLKIFSTGGITVTACNDSNKI 200
YR+ +PK L IF +G I +T +I
Sbjct: 213 YRMMKPKIVLLIFVSGKIVLTGAKVREEI 241
>gi|195122370|ref|XP_002005684.1| GI18943 [Drosophila mojavensis]
gi|193910752|gb|EDW09619.1| GI18943 [Drosophila mojavensis]
Length = 348
Score = 152 bits (383), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 75/181 (41%), Positives = 115/181 (63%), Gaps = 2/181 (1%)
Query: 22 QTVVPIQNHAPPQPPAHDPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMV 80
QT+ P P P + DP + + N+V + ++ C L+L++IAL+ N EY + V
Sbjct: 150 QTMGPSTPMTPATPGSADPGIVPQLQNIVSTVNLCCKLDLKRIALHARNAEYNPKRFAAV 209
Query: 81 TMKLRKPYTTASIWSSGKITCTGATSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLG 140
M++R+P TTA I+SSGK+ CTGA SED S++AAR+YAR +Q+LGF A+F +F++ N++G
Sbjct: 210 IMRIREPRTTALIFSSGKMVCTGAKSEDDSRLAARKYARIIQKLGFPAKFLDFKIQNMVG 269
Query: 141 TCSMPFAIRILQFSEKH-RAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTACNDSNK 199
+C + F IR+ H + YEPEL PG+ YR+ RP+ L IF +G + +T +
Sbjct: 270 SCDVKFPIRLEGLVLTHCNFSSYEPELFPGLIYRMVRPRIVLLIFVSGKVVLTGAKVRQE 329
Query: 200 I 200
I
Sbjct: 330 I 330
>gi|378727024|gb|EHY53483.1| TATA-box-binding protein [Exophiala dermatitidis NIH/UT8656]
Length = 268
Score = 152 bits (383), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 73/175 (41%), Positives = 112/175 (64%), Gaps = 7/175 (4%)
Query: 33 PQPPAHDPEVDI-----IINNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRK 86
PQ P+ P + + N+V + ++ C L+L+ IAL+ N EY + V M++R+
Sbjct: 69 PQTPSATPGAGVSGIVPTLQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIRE 128
Query: 87 PYTTASIWSSGKITCTGATSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPF 146
P TTA I++SGK+ TGA SED SK+A+R+YAR +Q+LGF A+FT+F++ N++G+C + F
Sbjct: 129 PKTTALIFASGKMVVTGAKSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKF 188
Query: 147 AIRILQFSEKHRA-AEYEPELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
IR+ + KH + YEPEL PG+ YR+ +PK L IF +G I +T +I
Sbjct: 189 PIRLEGLASKHHPFSSYEPELFPGLIYRMIKPKIVLLIFVSGKIVLTGAKVREEI 243
>gi|91081661|ref|XP_969326.1| PREDICTED: similar to DNA-binding protein [Tribolium castaneum]
gi|270006234|gb|EFA02682.1| hypothetical protein TcasGA2_TC008403 [Tribolium castaneum]
Length = 311
Score = 152 bits (383), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 71/171 (41%), Positives = 112/171 (65%), Gaps = 2/171 (1%)
Query: 32 PPQPPAHDPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTT 90
P P + DP + + N+V + ++ C L+L++IAL+ N EY + V M++R+P TT
Sbjct: 124 PMTPHSADPNIVPQLQNIVSTVNLSCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTT 183
Query: 91 ASIWSSGKITCTGATSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRI 150
A I+SSGK+ CTGA SED S++AAR+YAR +Q+LGF A+F +F++ N++G+C + F IR+
Sbjct: 184 ALIFSSGKMVCTGAKSEDDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRL 243
Query: 151 LQFSEKHRA-AEYEPELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
H + + YEPEL PG+ YR+ +P+ L IF +G + +T +I
Sbjct: 244 EGLVLTHSSFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLTGAKIRQEI 294
>gi|340727525|ref|XP_003402092.1| PREDICTED: TATA-box-binding protein-like [Bombus terrestris]
gi|350422935|ref|XP_003493334.1| PREDICTED: TATA-box-binding protein-like [Bombus impatiens]
Length = 314
Score = 152 bits (383), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 76/201 (37%), Positives = 121/201 (60%), Gaps = 2/201 (0%)
Query: 2 TTAGMTTTHSSHSEQEPPPTQTVVPIQNHAPPQPPAHDPEVDIIINNVVCSFSVRCHLNL 61
T M + H +S PP+ P P + DP + + N+V + ++ C L+L
Sbjct: 97 TPQNMMSPHLQNSNHIAPPSIAPSTPGPMTPMTPASADPAILPQLQNIVSTVNLNCKLDL 156
Query: 62 RQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGATSEDQSKIAARRYARC 120
++IAL+ N EY + V M++R+P TTA I+SSGK+ CTGA SE+ S++AAR+YAR
Sbjct: 157 KKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARI 216
Query: 121 LQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKH-RAAEYEPELHPGVTYRITRPKA 179
+Q+LGF A+F +F++ N++G+C + F IR+ H + + YEPEL PG+ YR+ +P+
Sbjct: 217 IQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRI 276
Query: 180 TLKIFSTGGITVTACNDSNKI 200
L IF +G + +T +I
Sbjct: 277 VLLIFVSGKVVLTGAKVRQEI 297
>gi|367029935|ref|XP_003664251.1| hypothetical protein MYCTH_2306864 [Myceliophthora thermophila ATCC
42464]
gi|347011521|gb|AEO59006.1| hypothetical protein MYCTH_2306864 [Myceliophthora thermophila ATCC
42464]
Length = 257
Score = 152 bits (383), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 79/200 (39%), Positives = 119/200 (59%), Gaps = 3/200 (1%)
Query: 4 AGMTTTHSSHSEQEPPPTQTVVPIQNHAPPQP-PAHDPEVDIIINNVVCSFSVRCHLNLR 62
GMTT + + V P A P PA + + N+V + ++ C L+L+
Sbjct: 41 GGMTTNGAQQQGVQATNGTGVTPATPAATPGAGPAGPSGITPTLQNIVATVNLDCRLDLK 100
Query: 63 QIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGATSEDQSKIAARRYARCL 121
IAL+ N EY + V M++R+P TTA I++SGK+ TGA SED SK+A+R+YAR +
Sbjct: 101 TIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGAKSEDDSKLASRKYARII 160
Query: 122 QRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEK-HRAAEYEPELHPGVTYRITRPKAT 180
Q+LGF A+FT+F++ N++G+C + F IR+ + K H + YEPEL PG+ YR+ +PK
Sbjct: 161 QKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASKHHNFSSYEPELFPGLIYRMIKPKIV 220
Query: 181 LKIFSTGGITVTACNDSNKI 200
L IF +G I +T +I
Sbjct: 221 LLIFVSGKIVLTGAKVREEI 240
>gi|440902256|gb|ELR53068.1| TATA-box-binding protein, partial [Bos grunniens mutus]
Length = 247
Score = 151 bits (382), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 72/177 (40%), Positives = 114/177 (64%), Gaps = 2/177 (1%)
Query: 26 PIQNHAPPQPPAHDPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKL 84
P+ P P + E+ ++NVVC+ ++ C L+L+ IAL N EY + V M++
Sbjct: 70 PMIPMTPAMPASEIAELVPQLHNVVCTVNLGCKLDLKSIALLARNAEYNPKRFAAVIMRI 129
Query: 85 RKPYTTASIWSSGKITCTGATSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSM 144
R+P TTA ++SSGK+ CTG SE+QS++AAR+YAR +Q+LGF A+F +F++ N++G+C +
Sbjct: 130 REPRTTALLFSSGKMVCTGGKSEEQSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDV 189
Query: 145 PFAIRILQFSEKHRA-AEYEPELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
F IR+ H+ A YEPEL PG+ YR+ +P+ L IF +G + +T ++I
Sbjct: 190 KFPIRLEPLVLSHQQFASYEPELFPGLVYRMIKPRIVLLIFVSGKVVLTGAKVRSEI 246
>gi|427788157|gb|JAA59530.1| Putative tata-box-binding protein [Rhipicephalus pulchellus]
Length = 308
Score = 151 bits (382), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 71/171 (41%), Positives = 114/171 (66%), Gaps = 2/171 (1%)
Query: 32 PPQPPAHDPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTT 90
P P + DP + + N+V + ++ C L+L++IAL+ N EY + V M++R+P TT
Sbjct: 121 PITPASADPGIVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTT 180
Query: 91 ASIWSSGKITCTGATSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRI 150
A I+SSGK+ CTGA SE+QS++AAR+YAR +Q+LGF A+F +F++ N++G+C + F IR+
Sbjct: 181 ALIFSSGKMVCTGAKSEEQSRLAARKYARIIQKLGFDAKFLDFKIQNMVGSCDVRFPIRL 240
Query: 151 LQFSEKH-RAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
H + + YEPEL PG+ YR+ +P+ L IF +G + +T ++I
Sbjct: 241 EGLVLTHSQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLTGAKVRSEI 291
>gi|346470907|gb|AEO35298.1| hypothetical protein [Amblyomma maculatum]
Length = 309
Score = 151 bits (382), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 71/171 (41%), Positives = 114/171 (66%), Gaps = 2/171 (1%)
Query: 32 PPQPPAHDPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTT 90
P P + DP + + N+V + ++ C L+L++IAL+ N EY + V M++R+P TT
Sbjct: 122 PITPASADPGIVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTT 181
Query: 91 ASIWSSGKITCTGATSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRI 150
A I+SSGK+ CTGA SE+QS++AAR+YAR +Q+LGF A+F +F++ N++G+C + F IR+
Sbjct: 182 ALIFSSGKMVCTGAKSEEQSRLAARKYARIIQKLGFDAKFLDFKIQNMVGSCDVRFPIRL 241
Query: 151 LQFSEKH-RAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
H + + YEPEL PG+ YR+ +P+ L IF +G + +T ++I
Sbjct: 242 EGLVLTHSQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLTGAKVRSEI 292
>gi|384501418|gb|EIE91909.1| TATA-box-binding protein [Rhizopus delemar RA 99-880]
Length = 239
Score = 151 bits (382), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 71/158 (44%), Positives = 109/158 (68%), Gaps = 4/158 (2%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGA 104
+ N+V + ++ C L+L+ IAL+ N EY + V M++R+P TTA I++SGK+ TGA
Sbjct: 66 LQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGA 125
Query: 105 TSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRI--LQFSEKHRAAEY 162
SED SK+AAR+YAR +Q+LGF+A+FT+F++ N++G+C + F IR+ L +S H ++ Y
Sbjct: 126 KSEDDSKLAARKYARIIQKLGFQAKFTDFKIQNIVGSCDIKFPIRLEGLAYSHGHFSS-Y 184
Query: 163 EPELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
EPEL PG+ YR+ +PK L IF +G I +T +I
Sbjct: 185 EPELFPGLIYRMVKPKIVLLIFVSGKIVLTGAKVREEI 222
>gi|119568382|gb|EAW47997.1| TBP-like 1, isoform CRA_b [Homo sapiens]
Length = 111
Score = 151 bits (382), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 69/106 (65%), Positives = 83/106 (78%)
Query: 39 DPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYRRENGMVTMKLRKPYTTASIWSSGK 98
D +DI+I NVVC F RCHLNLR+IAL G NV Y+R+ G V MKLRKP TA+IWSSGK
Sbjct: 6 DVALDILITNVVCVFRTRCHLNLRKIALEGANVIYKRDVGKVLMKLRKPRITATIWSSGK 65
Query: 99 ITCTGATSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSM 144
I CTGATSE+++K ARR AR LQ+LGF+ FT+F+VVNVL C+M
Sbjct: 66 IICTGATSEEEAKFGARRLARSLQKLGFQVIFTDFKVVNVLAVCNM 111
>gi|1351224|sp|P48511.1|TBP_MESCR RecName: Full=TATA-box-binding protein; AltName: Full=TATA
sequence-binding protein; Short=TBP; AltName:
Full=TATA-binding factor; AltName: Full=TATA-box factor;
AltName: Full=Transcription initiation factor TFIID TBP
subunit
gi|841440|gb|AAA80641.1| TATA-binding protein [Mesembryanthemum crystallinum]
Length = 200
Score = 151 bits (382), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 72/171 (42%), Positives = 109/171 (63%), Gaps = 2/171 (1%)
Query: 27 IQNHAPPQPPAHDPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLR 85
++ P P H + + N+V + ++ C L+L+ IAL N EY + V M++R
Sbjct: 6 LEGSQPVDPIKHPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIR 65
Query: 86 KPYTTASIWSSGKITCTGATSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMP 145
+P TTA I++SGK+ CTGA SE QSK+AAR+YAR +Q+LGF A+F +F++ N++G+C +
Sbjct: 66 EPKTTALIFASGKMVCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVK 125
Query: 146 FAIRILQFSEKHRA-AEYEPELHPGVTYRITRPKATLKIFSTGGITVTACN 195
F IR+ + H A + YEPEL PG+ YR+ +PK L IF +G I +T
Sbjct: 126 FPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLTGAK 176
>gi|224123800|ref|XP_002319167.1| global transcription factor group [Populus trichocarpa]
gi|222857543|gb|EEE95090.1| global transcription factor group [Populus trichocarpa]
Length = 202
Score = 151 bits (382), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 70/152 (46%), Positives = 103/152 (67%), Gaps = 2/152 (1%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGA 104
+ N+V + ++ C L L+QIAL N EY + V M++R+P TTA I++SGK+ CTGA
Sbjct: 26 LQNIVSTVNLDCKLELKQIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVCTGA 85
Query: 105 TSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKHRA-AEYE 163
SE QSK+AAR+YAR +Q+LGF A+F +F++ N++G+C + F IR+ + H A + YE
Sbjct: 86 KSEQQSKLAARKYARIIQKLGFAAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYE 145
Query: 164 PELHPGVTYRITRPKATLKIFSTGGITVTACN 195
PEL PG+ YR+ +PK L IF +G I +T
Sbjct: 146 PELFPGLIYRMKQPKIVLLIFVSGKIVITGAK 177
Score = 37.4 bits (85), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 31/63 (49%)
Query: 137 NVLGTCSMPFAIRILQFSEKHRAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTACND 196
N++ T ++ + + Q + + R AEY P+ V RI PK T IF++G + T
Sbjct: 28 NIVSTVNLDCKLELKQIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVCTGAKS 87
Query: 197 SNK 199
+
Sbjct: 88 EQQ 90
>gi|297695161|ref|XP_002824816.1| PREDICTED: TATA box-binding protein-like protein 2 [Pongo abelii]
Length = 375
Score = 151 bits (382), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 68/157 (43%), Positives = 110/157 (70%), Gaps = 2/157 (1%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGA 104
+ N+V + ++ C L+L++IAL+ N EY + V M++R+P TTA I+SSGK+ CTGA
Sbjct: 202 LQNIVSTVNLACKLDLKKIALHAKNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 261
Query: 105 TSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKHRA-AEYE 163
SE+QS++AAR+YAR +Q+LGF ARF +F++ N++G+C + F+IR+ H+ + YE
Sbjct: 262 KSEEQSRLAARKYARVVQKLGFPARFLDFKIQNMVGSCDVRFSIRLEGLVLTHQQFSSYE 321
Query: 164 PELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
PEL PG+ YR+ +P+ L IF +G + +T + ++I
Sbjct: 322 PELFPGLIYRMVKPRIVLLIFVSGKVVLTGAKERSEI 358
>gi|431895824|gb|ELK05242.1| TATA box-binding protein-like protein 2 [Pteropus alecto]
Length = 342
Score = 151 bits (381), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 68/157 (43%), Positives = 110/157 (70%), Gaps = 2/157 (1%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGA 104
+ N+V + ++ C L+L++IAL+ N EY + V M++R+P TTA I+SSGK+ CTGA
Sbjct: 169 LQNIVSTANLACKLDLKKIALHAKNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 228
Query: 105 TSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKHRA-AEYE 163
SE+QS++AAR+YAR +Q+LGF ARF +F++ N++G+C + F+IR+ H+ + YE
Sbjct: 229 KSEEQSRLAARKYARVVQKLGFPARFLDFKIQNMVGSCDVRFSIRLEGLVLTHQQFSSYE 288
Query: 164 PELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
PEL PG+ YR+ +P+ L IF +G + +T + ++I
Sbjct: 289 PELFPGLIYRMVKPRIVLLIFVSGKVVLTGAKERSEI 325
>gi|384500347|gb|EIE90838.1| TATA-box-binding protein [Rhizopus delemar RA 99-880]
Length = 248
Score = 151 bits (381), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 71/159 (44%), Positives = 109/159 (68%), Gaps = 4/159 (2%)
Query: 45 IINNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTG 103
+ N+V + ++ C L+L+ IAL+ N EY + V M++R+P TTA I++SGK+ TG
Sbjct: 74 VFRNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTG 133
Query: 104 ATSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRI--LQFSEKHRAAE 161
A SED SK+AAR+YAR +Q+LGF+A+FT+F++ N++G+C + F IR+ L +S H ++
Sbjct: 134 AKSEDDSKLAARKYARIIQKLGFQAKFTDFKIQNIVGSCDVKFPIRLEGLAYSHGHFSS- 192
Query: 162 YEPELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
YEPEL PG+ YR+ +PK L IF +G I +T +I
Sbjct: 193 YEPELFPGLIYRMVKPKIVLLIFVSGKIVLTGAKVREEI 231
>gi|444728605|gb|ELW69055.1| TATA box-binding protein-like protein 2 [Tupaia chinensis]
Length = 378
Score = 151 bits (381), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 74/188 (39%), Positives = 121/188 (64%), Gaps = 5/188 (2%)
Query: 15 EQEPPPTQTVVPIQNHAPPQPPAHDPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYR 74
+ P P ++ P+ P P + E+ + N+V + ++ C L+L++IAL+ N EY
Sbjct: 177 DSNPLPLASITPMM---PMTPASECSEIVPQLQNIVSTVNLACKLDLKKIALHAKNAEYN 233
Query: 75 -RENGMVTMKLRKPYTTASIWSSGKITCTGATSEDQSKIAARRYARCLQRLGFKARFTNF 133
+ V M++R+P TTA I+SSGK+ CTGA SE+QS++AAR+YAR +Q+LGF ARF +F
Sbjct: 234 PKRFAAVIMRIREPRTTALIFSSGKMVCTGAKSEEQSRLAARKYARVVQKLGFPARFLDF 293
Query: 134 RVVNVLGTCSMPFAIRILQFSEKHRA-AEYEPELHPGVTYRITRPKATLKIFSTGGITVT 192
++ N++G+C + F IR+ H+ + YEPEL PG+ YR+ +P+ L IF +G + +T
Sbjct: 294 KIQNMVGSCDVRFPIRLEGLVLTHQQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 353
Query: 193 ACNDSNKI 200
+ ++I
Sbjct: 354 GAKERSEI 361
>gi|1729912|sp|P53361.1|TBP_SPOFR RecName: Full=TATA-box-binding protein; AltName: Full=TATA
sequence-binding protein; Short=TBP; AltName:
Full=TATA-binding factor; AltName: Full=TATA-box factor;
AltName: Full=Transcription initiation factor TFIID TBP
subunit
gi|349117|gb|AAA62394.1| DNA-binding protein [Spodoptera frugiperda]
Length = 307
Score = 151 bits (381), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 76/202 (37%), Positives = 120/202 (59%), Gaps = 11/202 (5%)
Query: 1 MTTAGMTTTHSSHSEQEPPPTQTVVPIQNHAPPQPPAHDPEVDIIINNVVCSFSVRCHLN 60
M T+G S+ P P P P + DP + + N+V + ++ C L+
Sbjct: 98 MITSGSLAGQQMLSQASPAPM---------TPMTPHSADPGIVPQLQNIVSTVNLNCKLD 148
Query: 61 LRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGATSEDQSKIAARRYAR 119
L++IAL+ N EY + V M++R+P TTA I+SSGK+ CTGA SE+ S++AAR+YAR
Sbjct: 149 LKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYAR 208
Query: 120 CLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKH-RAAEYEPELHPGVTYRITRPK 178
+Q+LGF A+F +F++ N++G+C + F IR+ H + + YEPEL PG+ YR+ +P+
Sbjct: 209 IIQKLGFTAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPR 268
Query: 179 ATLKIFSTGGITVTACNDSNKI 200
L IF +G + +T +I
Sbjct: 269 IVLLIFVSGKVVLTGAKVREEI 290
>gi|348573495|ref|XP_003472526.1| PREDICTED: TATA box-binding protein-like protein 2-like [Cavia
porcellus]
Length = 397
Score = 151 bits (381), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 68/157 (43%), Positives = 110/157 (70%), Gaps = 2/157 (1%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGA 104
+ N+V + ++ C L+L++IAL+ N EY + V M++R+P TTA I+SSGK+ CTGA
Sbjct: 224 LQNIVSTVNLACKLDLKKIALHAKNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 283
Query: 105 TSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKHRA-AEYE 163
SE+QS++AAR+YAR +Q+LGF ARF +F++ N++G+C + F+IR+ H+ + YE
Sbjct: 284 KSEEQSRLAARKYARVVQKLGFPARFLDFKIQNMVGSCDVRFSIRLEGLVLTHQQFSSYE 343
Query: 164 PELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
PEL PG+ YR+ +P+ L IF +G + +T + ++I
Sbjct: 344 PELFPGLIYRMVKPRIVLLIFVSGKVVLTGAKERSEI 380
>gi|291403917|ref|XP_002718356.1| PREDICTED: TATA box binding protein like 2-like [Oryctolagus
cuniculus]
Length = 345
Score = 151 bits (381), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 67/158 (42%), Positives = 111/158 (70%), Gaps = 3/158 (1%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGA 104
+ N+V + ++ C L+L++IAL+ N EY + V M++R+P TTA I+SSGK+ CTGA
Sbjct: 171 LQNIVSTVNLACKLDLKKIALHAKNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 230
Query: 105 TSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRI--LQFSEKHRAAEY 162
SE+QS++AAR+YAR +Q+LG+ ARF +F++ N++G+C + F IR+ L + + ++ Y
Sbjct: 231 KSEEQSRLAARKYARVVQKLGYPARFLDFKIQNMVGSCDVRFPIRLEGLVLTHQQFSSSY 290
Query: 163 EPELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
EPEL PG+ YR+ +P+ L IF +G + +T + ++I
Sbjct: 291 EPELFPGLIYRMVKPRIVLLIFVSGKVVLTGAKERSEI 328
>gi|340939166|gb|EGS19788.1| putative tata-box binding protein [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 255
Score = 150 bits (380), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 72/171 (42%), Positives = 110/171 (64%), Gaps = 2/171 (1%)
Query: 32 PPQPPAHDPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTT 90
P PA + + N+V + ++ C L+L+ IAL+ N EY + V M++R+P TT
Sbjct: 68 PGAGPAGPSGITPTLQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTT 127
Query: 91 ASIWSSGKITCTGATSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRI 150
A I++SGK+ TGA SED SK+A+R+YAR +Q+LGF A+FT+F++ N++G+C + F IR+
Sbjct: 128 ALIFASGKMVVTGAKSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRL 187
Query: 151 LQFSEK-HRAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
+ K H + YEPEL PG+ YR+ +PK L IF +G I +T +I
Sbjct: 188 EGLASKHHNFSSYEPELFPGLIYRMIKPKIVLLIFVSGKIVLTGAKVREEI 238
>gi|358368366|dbj|GAA84983.1| TATA-box binding protein [Aspergillus kawachii IFO 4308]
Length = 262
Score = 150 bits (380), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 71/164 (43%), Positives = 110/164 (67%), Gaps = 4/164 (2%)
Query: 35 PPAHDPEVDII--INNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTA 91
P A+ P I+ + N+V + ++ C L+L+ IAL+ N EY + V M++R+P TTA
Sbjct: 76 PGANTPGSGIVPTLQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTA 135
Query: 92 SIWSSGKITCTGATSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRIL 151
I++SGK+ TGA SED SK+A+R+YAR +Q+LGF A+FT+F++ N++G+C + F IR+
Sbjct: 136 LIFASGKMVVTGAKSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLE 195
Query: 152 QFSEK-HRAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTAC 194
+ + H + YEPEL PG+ YR+ +PK L IF +G I +T
Sbjct: 196 GLASRHHNFSSYEPELFPGLIYRMMKPKIVLLIFVSGKIVLTGA 239
>gi|317036144|ref|XP_001397705.2| TATA-box-binding protein [Aspergillus niger CBS 513.88]
Length = 262
Score = 150 bits (380), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 71/164 (43%), Positives = 110/164 (67%), Gaps = 4/164 (2%)
Query: 35 PPAHDPEVDII--INNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTA 91
P A+ P I+ + N+V + ++ C L+L+ IAL+ N EY + V M++R+P TTA
Sbjct: 76 PGANTPGSGIVPTLQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTA 135
Query: 92 SIWSSGKITCTGATSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRIL 151
I++SGK+ TGA SED SK+A+R+YAR +Q+LGF A+FT+F++ N++G+C + F IR+
Sbjct: 136 LIFASGKMVVTGAKSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLE 195
Query: 152 QFSEK-HRAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTAC 194
+ + H + YEPEL PG+ YR+ +PK L IF +G I +T
Sbjct: 196 GLASRHHNFSSYEPELFPGLIYRMMKPKIVLLIFVSGKIVLTGA 239
>gi|426376979|ref|XP_004055257.1| PREDICTED: TATA box-binding protein-like protein 2 [Gorilla gorilla
gorilla]
Length = 375
Score = 150 bits (380), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 68/157 (43%), Positives = 108/157 (68%), Gaps = 2/157 (1%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGA 104
+ N+V + ++ C L+L++IAL N EY + V M++R+P TTA I+SSGK+ CTGA
Sbjct: 202 LQNIVSTVNLACKLDLKKIALQAKNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 261
Query: 105 TSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKHRA-AEYE 163
SE+QS++AAR+YAR +Q+LGF ARF +F++ N++G+C + F IR+ H+ + YE
Sbjct: 262 KSEEQSRLAARKYARVVQKLGFPARFLDFKIQNMVGSCDVRFPIRLEGLVLTHQQFSSYE 321
Query: 164 PELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
PEL PG+ YR+ +P+ L IF +G + +T + ++I
Sbjct: 322 PELFPGLIYRMVKPRIVLLIFVSGKVVLTGAKERSEI 358
>gi|115396162|ref|XP_001213720.1| TATA-box binding protein [Aspergillus terreus NIH2624]
gi|114193289|gb|EAU34989.1| TATA-box binding protein [Aspergillus terreus NIH2624]
Length = 263
Score = 150 bits (380), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 71/164 (43%), Positives = 110/164 (67%), Gaps = 4/164 (2%)
Query: 35 PPAHDPEVDII--INNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTA 91
P A+ P I+ + N+V + ++ C L+L+ IAL+ N EY + V M++R+P TTA
Sbjct: 77 PGANTPGSGIVPTLQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTA 136
Query: 92 SIWSSGKITCTGATSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRIL 151
I++SGK+ TGA SED SK+A+R+YAR +Q+LGF A+FT+F++ N++G+C + F IR+
Sbjct: 137 LIFASGKMVVTGAKSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLE 196
Query: 152 QFSEK-HRAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTAC 194
+ + H + YEPEL PG+ YR+ +PK L IF +G I +T
Sbjct: 197 GLASRHHNFSSYEPELFPGLIYRMMKPKIVLLIFVSGKIVLTGA 240
>gi|196007384|ref|XP_002113558.1| TATA-binding protein [Trichoplax adhaerens]
gi|190583962|gb|EDV24032.1| TATA-binding protein [Trichoplax adhaerens]
Length = 203
Score = 150 bits (380), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 77/188 (40%), Positives = 118/188 (62%), Gaps = 7/188 (3%)
Query: 17 EPPPTQTVVPIQNHAPPQPPAHDPEVDII--INNVVCSFSVRCHLNLRQIALNGVNVEYR 74
+PP T +P P PA I+ + N+V + ++ C L L++IAL+ N EY
Sbjct: 2 QPPSTPAAIP---SIGPGTPATAEAASILPQLQNIVSTVNLGCRLELQRIALHARNAEYN 58
Query: 75 -RENGMVTMKLRKPYTTASIWSSGKITCTGATSEDQSKIAARRYARCLQRLGFKARFTNF 133
+ V M++R+P TTA I+SSGK+ CTGA SE+QS++AAR+YAR +Q+LGF A+FT F
Sbjct: 59 PKRFAAVIMRIREPRTTALIFSSGKMVCTGAKSEEQSRLAARKYARVIQKLGFPAKFTEF 118
Query: 134 RVVNVLGTCSMPFAIRILQFSEKH-RAAEYEPELHPGVTYRITRPKATLKIFSTGGITVT 192
R+ N++G+C + F IR+ H + + YEPEL PG+ YR+ +P+ L IF +G + +T
Sbjct: 119 RIQNMVGSCDVKFPIRLEGLVLAHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 178
Query: 193 ACNDSNKI 200
++I
Sbjct: 179 GAKVRDEI 186
>gi|397523415|ref|XP_003831727.1| PREDICTED: TATA box-binding protein-like protein 2 [Pan paniscus]
gi|410048302|ref|XP_003952543.1| PREDICTED: TATA box binding protein like 2 [Pan troglodytes]
Length = 375
Score = 150 bits (380), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 68/157 (43%), Positives = 109/157 (69%), Gaps = 2/157 (1%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGA 104
+ N+V + ++ C L+L++IAL+ N EY + V M++R+P TTA I+SSGK+ CTGA
Sbjct: 202 LQNIVSTVNLACKLDLKKIALHAKNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 261
Query: 105 TSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKHRA-AEYE 163
SE+QS++AAR+YAR +Q+LGF ARF +F++ N++G+C + F IR+ H+ + YE
Sbjct: 262 KSEEQSRLAARKYARVVQKLGFPARFLDFKIQNMVGSCDVRFPIRLEGLVLTHQQFSSYE 321
Query: 164 PELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
PEL PG+ YR+ +P+ L IF +G + +T + ++I
Sbjct: 322 PELFPGLIYRMVKPRIVLLIFVSGKVVLTGAKERSEI 358
>gi|109658498|gb|AAI17186.1| TATA box binding protein like 2 [Homo sapiens]
gi|109658806|gb|AAI17160.1| TATA box binding protein like 2 [Homo sapiens]
gi|313883330|gb|ADR83151.1| TATA box binding protein like 2 [synthetic construct]
Length = 375
Score = 150 bits (380), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 68/157 (43%), Positives = 109/157 (69%), Gaps = 2/157 (1%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGA 104
+ N+V + ++ C L+L++IAL+ N EY + V M++R+P TTA I+SSGK+ CTGA
Sbjct: 202 LQNIVSTVNLACKLDLKKIALHAKNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 261
Query: 105 TSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKHRA-AEYE 163
SE+QS++AAR+YAR +Q+LGF ARF +F++ N++G+C + F IR+ H+ + YE
Sbjct: 262 KSEEQSRLAARKYARVVQKLGFPARFLDFKIQNMVGSCDVRFPIRLEGLVLTHQQFSSYE 321
Query: 164 PELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
PEL PG+ YR+ +P+ L IF +G + +T + ++I
Sbjct: 322 PELFPGLIYRMVKPRIVLLIFVSGKVVLTGAKERSEI 358
>gi|344273811|ref|XP_003408712.1| PREDICTED: TATA box-binding protein-like protein 2-like [Loxodonta
africana]
Length = 344
Score = 150 bits (380), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 68/157 (43%), Positives = 109/157 (69%), Gaps = 2/157 (1%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGA 104
+ N+V + ++ C L+L++IAL+ N EY + V M++R+P TTA I+SSGK+ CTGA
Sbjct: 171 LQNIVSTVNLACKLDLKKIALHAKNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 230
Query: 105 TSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKHRA-AEYE 163
SE+QS++AAR+YAR +Q+LGF ARF +F++ N++G+C + F IR+ H+ + YE
Sbjct: 231 KSEEQSRLAARKYARVVQKLGFPARFLDFKIQNMVGSCDVRFPIRLEGLVLTHQQFSSYE 290
Query: 164 PELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
PEL PG+ YR+ +P+ L IF +G + +T + ++I
Sbjct: 291 PELFPGLIYRMVKPRIVLLIFVSGKVVLTGAKERSEI 327
>gi|39930602|ref|NP_950248.1| TATA box-binding protein-like protein 2 [Homo sapiens]
gi|74749326|sp|Q6SJ96.1|TBPL2_HUMAN RecName: Full=TATA box-binding protein-like protein 2;
Short=TBP-like protein 2; AltName: Full=TATA box-binding
protein-related factor 3; Short=TBP-related factor 3
gi|38569209|gb|AAR24281.1| TBP-related factor 3 [Homo sapiens]
gi|90296776|gb|ABD93323.1| TATA box binding protein like 2 [Homo sapiens]
Length = 375
Score = 150 bits (380), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 68/157 (43%), Positives = 109/157 (69%), Gaps = 2/157 (1%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGA 104
+ N+V + ++ C L+L++IAL+ N EY + V M++R+P TTA I+SSGK+ CTGA
Sbjct: 202 LQNIVSTVNLACKLDLKKIALHAKNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 261
Query: 105 TSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKHRA-AEYE 163
SE+QS++AAR+YAR +Q+LGF ARF +F++ N++G+C + F IR+ H+ + YE
Sbjct: 262 KSEEQSRLAARKYARVVQKLGFPARFLDFKIQNMVGSCDVRFPIRLEGLVLTHQQFSSYE 321
Query: 164 PELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
PEL PG+ YR+ +P+ L IF +G + +T + ++I
Sbjct: 322 PELFPGLIYRMVKPRIVLLIFVSGKVVLTGAKERSEI 358
>gi|296414351|ref|XP_002836865.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295632706|emb|CAZ81056.1| unnamed protein product [Tuber melanosporum]
Length = 253
Score = 150 bits (380), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 73/174 (41%), Positives = 111/174 (63%), Gaps = 5/174 (2%)
Query: 32 PPQPPAHDPEVDIII---NNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKP 87
P P P V I+ N+V + ++ C L+L+ IAL+ N EY + V M++R+P
Sbjct: 63 PAATPGGGPTVSGIVPTLQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREP 122
Query: 88 YTTASIWSSGKITCTGATSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFA 147
TTA I++SGK+ TGA SED SK+A+R+YAR +Q+LGF A+FT+F++ N++G+C + F
Sbjct: 123 KTTALIFASGKMVVTGAKSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFP 182
Query: 148 IRILQFSEK-HRAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
IR+ + + H + YEPEL PG+ YR+ +PK L IF +G I +T +I
Sbjct: 183 IRLEGLASRHHHFSSYEPELFPGLIYRMIKPKIVLLIFVSGKIVLTGAKVREEI 236
>gi|335280289|ref|XP_001924325.3| PREDICTED: TATA box-binding protein-like protein 2-like [Sus
scrofa]
Length = 379
Score = 150 bits (380), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 68/157 (43%), Positives = 108/157 (68%), Gaps = 2/157 (1%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGA 104
+ N+V + ++ C L+L++IAL+ N EY + V M++R+P TTA I+SSGK+ CTGA
Sbjct: 206 LQNIVSTVNLACKLDLKKIALHAKNAEYNPKRLAAVIMRIREPRTTALIFSSGKMVCTGA 265
Query: 105 TSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKH-RAAEYE 163
SE+QS++A+R+YAR +Q+LGF ARF NF++ N++G+C + F IR+ H + YE
Sbjct: 266 KSEEQSRLASRKYARVVQKLGFPARFLNFKIQNMVGSCDVRFPIRLEGLVLTHPEFSSYE 325
Query: 164 PELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
PEL PG+ YR+ +P+ L IF +G + +T + ++I
Sbjct: 326 PELFPGLIYRMVKPQIVLLIFVSGKVVLTGAKERSEI 362
>gi|119601081|gb|EAW80675.1| TATA box binding protein like 2, isoform CRA_a [Homo sapiens]
Length = 307
Score = 150 bits (380), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 68/157 (43%), Positives = 109/157 (69%), Gaps = 2/157 (1%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGA 104
+ N+V + ++ C L+L++IAL+ N EY + V M++R+P TTA I+SSGK+ CTGA
Sbjct: 134 LQNIVSTVNLACKLDLKKIALHAKNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 193
Query: 105 TSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKHRA-AEYE 163
SE+QS++AAR+YAR +Q+LGF ARF +F++ N++G+C + F IR+ H+ + YE
Sbjct: 194 KSEEQSRLAARKYARVVQKLGFPARFLDFKIQNMVGSCDVRFPIRLEGLVLTHQQFSSYE 253
Query: 164 PELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
PEL PG+ YR+ +P+ L IF +G + +T + ++I
Sbjct: 254 PELFPGLIYRMVKPRIVLLIFVSGKVVLTGAKERSEI 290
>gi|355778612|gb|EHH63648.1| hypothetical protein EGM_16656 [Macaca fascicularis]
Length = 376
Score = 150 bits (379), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 68/157 (43%), Positives = 109/157 (69%), Gaps = 2/157 (1%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGA 104
+ N+V + ++ C L+L++IAL+ N EY + V M++R+P TTA I+SSGK+ CTGA
Sbjct: 203 LQNIVSTVNLACKLDLKKIALHAKNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 262
Query: 105 TSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKHRA-AEYE 163
SE+QS++AAR+YAR +Q+LGF ARF +F++ N++G+C + F IR+ H+ + YE
Sbjct: 263 KSEEQSRLAARKYARVVQKLGFPARFLDFKIQNMVGSCDVRFPIRLEGLVLTHQQFSSYE 322
Query: 164 PELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
PEL PG+ YR+ +P+ L IF +G + +T + ++I
Sbjct: 323 PELFPGLIYRMVKPRIVLLIFVSGKVVLTGAKERSEI 359
>gi|109083719|ref|XP_001088740.1| PREDICTED: TATA box-binding protein-like protein 2-like [Macaca
mulatta]
Length = 376
Score = 150 bits (379), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 68/157 (43%), Positives = 109/157 (69%), Gaps = 2/157 (1%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGA 104
+ N+V + ++ C L+L++IAL+ N EY + V M++R+P TTA I+SSGK+ CTGA
Sbjct: 203 LQNIVSTVNLACKLDLKKIALHAKNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 262
Query: 105 TSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKHRA-AEYE 163
SE+QS++AAR+YAR +Q+LGF ARF +F++ N++G+C + F IR+ H+ + YE
Sbjct: 263 KSEEQSRLAARKYARVVQKLGFPARFLDFKIQNMVGSCDVRFPIRLEGLVLTHQQFSSYE 322
Query: 164 PELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
PEL PG+ YR+ +P+ L IF +G + +T + ++I
Sbjct: 323 PELFPGLIYRMVKPRIVLLIFVSGKVVLTGAKERSEI 359
>gi|115482150|ref|NP_001064668.1| Os10g0432300 [Oryza sativa Japonica Group]
gi|78708692|gb|ABB47667.1| TATA-box binding protein 1, putative, expressed [Oryza sativa
Japonica Group]
gi|113639277|dbj|BAF26582.1| Os10g0432300 [Oryza sativa Japonica Group]
Length = 223
Score = 150 bits (379), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 70/157 (44%), Positives = 105/157 (66%), Gaps = 2/157 (1%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGA 104
+ N+V + ++ C L+L++IAL N EY + V M++R P TTA I++SGK+ CTGA
Sbjct: 47 LQNIVSTVNLDCRLDLKKIALQARNAEYNPKRFAAVIMRIRDPKTTALIFASGKMVCTGA 106
Query: 105 TSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKHRA-AEYE 163
SED SK+AAR+YAR +Q+LGF A+F +F++ N++G+C + F IR+ + H A + YE
Sbjct: 107 KSEDHSKLAARKYARIVQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYE 166
Query: 164 PELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
PEL PG+ YR+ +PK L IF +G I +T +I
Sbjct: 167 PELFPGLIYRMKQPKIVLLIFVSGKIVLTGAKYRKEI 203
>gi|367040469|ref|XP_003650615.1| hypothetical protein THITE_2110255 [Thielavia terrestris NRRL 8126]
gi|346997876|gb|AEO64279.1| hypothetical protein THITE_2110255 [Thielavia terrestris NRRL 8126]
Length = 256
Score = 150 bits (379), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 72/171 (42%), Positives = 110/171 (64%), Gaps = 2/171 (1%)
Query: 32 PPQPPAHDPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTT 90
P PA + + N+V + ++ C L+L+ IAL+ N EY + V M++R+P TT
Sbjct: 69 PGAGPAGPSGITPTLQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTT 128
Query: 91 ASIWSSGKITCTGATSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRI 150
A I++SGK+ TGA SED SK+A+R+YAR +Q+LGF A+FT+F++ N++G+C + F IR+
Sbjct: 129 ALIFASGKMVVTGAKSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRL 188
Query: 151 LQFSEK-HRAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
+ K H + YEPEL PG+ YR+ +PK L IF +G I +T +I
Sbjct: 189 EGLASKHHNFSSYEPELFPGLIYRMIKPKIVLLIFVSGKIVLTGAKVREEI 239
>gi|332237163|ref|XP_003267773.1| PREDICTED: LOW QUALITY PROTEIN: TATA box-binding protein-like
protein 2 [Nomascus leucogenys]
Length = 379
Score = 150 bits (379), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 68/157 (43%), Positives = 109/157 (69%), Gaps = 2/157 (1%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGA 104
+ N+V + ++ C L+L++IAL+ N EY + V M++R+P TTA I+SSGK+ CTGA
Sbjct: 206 LQNIVSTVNLACKLDLKKIALHAKNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 265
Query: 105 TSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKHRA-AEYE 163
SE+QS++AAR+YAR +Q+LGF ARF +F++ N++G+C + F IR+ H+ + YE
Sbjct: 266 KSEEQSRLAARKYARVVQKLGFPARFLDFKIQNMVGSCDVRFPIRLEGLVLTHQQFSSYE 325
Query: 164 PELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
PEL PG+ YR+ +P+ L IF +G + +T + ++I
Sbjct: 326 PELFPGLIYRMVKPRIVLLIFVSGKVVLTGAKERSEI 362
>gi|224051924|ref|XP_002200431.1| PREDICTED: TATA box-binding protein-like protein 2 [Taeniopygia
guttata]
Length = 322
Score = 150 bits (379), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 68/157 (43%), Positives = 107/157 (68%), Gaps = 2/157 (1%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGA 104
+ N+V + ++ C L+L+ IAL N EY + V M++R+P TTA I+SSGK+ CTGA
Sbjct: 148 LQNIVSTVNLACKLDLKNIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 207
Query: 105 TSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKHRA-AEYE 163
SE+QS++AAR+YAR +Q+LGF A+F +F++ N++G+C + F IR+ H+ + YE
Sbjct: 208 KSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVRFPIRLEGLVLTHQQFSSYE 267
Query: 164 PELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
PEL PG+ YR+ +P+ L IF +G + +T D ++I
Sbjct: 268 PELFPGLVYRMVKPRIVLLIFVSGKVVLTGAKDRSEI 304
>gi|169770491|ref|XP_001819715.1| TATA-box-binding protein [Aspergillus oryzae RIB40]
gi|238487092|ref|XP_002374784.1| transcription factor TFIID [Aspergillus flavus NRRL3357]
gi|83767574|dbj|BAE57713.1| unnamed protein product [Aspergillus oryzae RIB40]
gi|220699663|gb|EED56002.1| transcription factor TFIID [Aspergillus flavus NRRL3357]
gi|391867294|gb|EIT76540.1| TATA-box binding protein (TBP), component of TFIID and TFIIIB
[Aspergillus oryzae 3.042]
Length = 263
Score = 150 bits (379), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 71/164 (43%), Positives = 110/164 (67%), Gaps = 4/164 (2%)
Query: 35 PPAHDPEVDII--INNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTA 91
P A+ P I+ + N+V + ++ C L+L+ IAL+ N EY + V M++R+P TTA
Sbjct: 77 PGANTPGSGIVPTLQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTA 136
Query: 92 SIWSSGKITCTGATSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRIL 151
I++SGK+ TGA SED SK+A+R+YAR +Q+LGF A+FT+F++ N++G+C + F IR+
Sbjct: 137 LIFASGKMVVTGAKSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLE 196
Query: 152 QFSEK-HRAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTAC 194
+ + H + YEPEL PG+ YR+ +PK L IF +G I +T
Sbjct: 197 GLASRHHNFSSYEPELFPGLIYRMMKPKIVLLIFVSGKIVLTGA 240
>gi|119491905|ref|XP_001263447.1| RNA polymerase I and III transcription factor complex component
Tbp, putative [Neosartorya fischeri NRRL 181]
gi|119411607|gb|EAW21550.1| RNA polymerase I and III transcription factor complex component
Tbp, putative [Neosartorya fischeri NRRL 181]
Length = 264
Score = 150 bits (379), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 71/164 (43%), Positives = 110/164 (67%), Gaps = 4/164 (2%)
Query: 35 PPAHDPEVDII--INNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTA 91
P A+ P I+ + N+V + ++ C L+L+ IAL+ N EY + V M++R+P TTA
Sbjct: 78 PGANAPGSGIVPTLQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTA 137
Query: 92 SIWSSGKITCTGATSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRIL 151
I++SGK+ TGA SED SK+A+R+YAR +Q+LGF A+FT+F++ N++G+C + F IR+
Sbjct: 138 LIFASGKMVVTGAKSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLE 197
Query: 152 QFSEKHRA-AEYEPELHPGVTYRITRPKATLKIFSTGGITVTAC 194
+ +H + YEPEL PG+ YR+ +PK L IF +G I +T
Sbjct: 198 GLASRHHNFSSYEPELFPGLIYRMMKPKIVLLIFVSGKIVLTGA 241
>gi|158287840|ref|XP_309748.2| AGAP010958-PA [Anopheles gambiae str. PEST]
gi|157019382|gb|EAA45305.2| AGAP010958-PA [Anopheles gambiae str. PEST]
Length = 323
Score = 150 bits (379), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 70/164 (42%), Positives = 109/164 (66%), Gaps = 2/164 (1%)
Query: 39 DPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSG 97
+P + + N+V + ++ C L+L++IAL+ N EY + V M++R+P TTA I+SSG
Sbjct: 143 EPAILPQLQNIVSTVNLSCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSG 202
Query: 98 KITCTGATSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKH 157
K+ CTGA SED S++AAR+YAR +Q+LGF A+F +F+V N++G+C + F IR+ H
Sbjct: 203 KMVCTGAKSEDDSRLAARKYARIIQKLGFTAKFLDFKVQNMVGSCDVRFPIRLEGLVLTH 262
Query: 158 -RAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
R + YEPEL PG+ YR+ +P+ L IF +G + +T +I
Sbjct: 263 GRFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLTGAKVRQEI 306
>gi|302663669|ref|XP_003023473.1| hypothetical protein TRV_02367 [Trichophyton verrucosum HKI 0517]
gi|291187474|gb|EFE42855.1| hypothetical protein TRV_02367 [Trichophyton verrucosum HKI 0517]
Length = 275
Score = 150 bits (379), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 73/174 (41%), Positives = 111/174 (63%), Gaps = 5/174 (2%)
Query: 32 PPQPPAHDPEVDIII---NNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKP 87
P P P V I+ N+V + ++ C L+L+ IAL+ N EY + V M++R+P
Sbjct: 67 PVATPGAGPGVSGIVPTLQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREP 126
Query: 88 YTTASIWSSGKITCTGATSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFA 147
TTA I++SGK+ TGA SED SK+A+R+YAR +Q+LGF A+FT+F++ N++G+C + F
Sbjct: 127 KTTALIFASGKMVVTGAKSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFP 186
Query: 148 IRILQFSEKHRA-AEYEPELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
IR+ + +H + YEPEL PG+ YR+ +PK L IF +G I +T +I
Sbjct: 187 IRLEGLASRHHNFSSYEPELFPGLIYRMMKPKIVLLIFVSGKIVLTGAKVREEI 240
>gi|134083254|emb|CAK46825.1| unnamed protein product [Aspergillus niger]
gi|350633630|gb|EHA21995.1| hypothetical protein ASPNIDRAFT_210581 [Aspergillus niger ATCC
1015]
Length = 282
Score = 150 bits (379), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 71/164 (43%), Positives = 110/164 (67%), Gaps = 4/164 (2%)
Query: 35 PPAHDPEVDII--INNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTA 91
P A+ P I+ + N+V + ++ C L+L+ IAL+ N EY + V M++R+P TTA
Sbjct: 76 PGANTPGSGIVPTLQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTA 135
Query: 92 SIWSSGKITCTGATSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRIL 151
I++SGK+ TGA SED SK+A+R+YAR +Q+LGF A+FT+F++ N++G+C + F IR+
Sbjct: 136 LIFASGKMVVTGAKSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLE 195
Query: 152 QFSEK-HRAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTAC 194
+ + H + YEPEL PG+ YR+ +PK L IF +G I +T
Sbjct: 196 GLASRHHNFSSYEPELFPGLIYRMMKPKIVLLIFVSGKIVLTGA 239
>gi|402876253|ref|XP_003901890.1| PREDICTED: TATA box-binding protein-like protein 2 [Papio anubis]
Length = 376
Score = 150 bits (379), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 68/157 (43%), Positives = 109/157 (69%), Gaps = 2/157 (1%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGA 104
+ N+V + ++ C L+L++IAL+ N EY + V M++R+P TTA I+SSGK+ CTGA
Sbjct: 203 LQNIVSTVNLACKLDLKKIALHAKNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 262
Query: 105 TSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKHRA-AEYE 163
SE+QS++AAR+YAR +Q+LGF ARF +F++ N++G+C + F IR+ H+ + YE
Sbjct: 263 KSEEQSRLAARKYARVVQKLGFPARFLDFKIQNMVGSCDVRFPIRLEGLVLTHQQFSSYE 322
Query: 164 PELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
PEL PG+ YR+ +P+ L IF +G + +T + ++I
Sbjct: 323 PELFPGLIYRMVKPRIVLLIFVSGKVVLTGAKERSEI 359
>gi|70999782|ref|XP_754608.1| RNA polymerase I and III transcription factor complex component Tbp
[Aspergillus fumigatus Af293]
gi|66852245|gb|EAL92570.1| RNA polymerase I and III transcription factor complex component
Tbp, putative [Aspergillus fumigatus Af293]
gi|159127621|gb|EDP52736.1| RNA polymerase I and III transcription factor complex component
Tbp, putative [Aspergillus fumigatus A1163]
Length = 283
Score = 150 bits (379), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 71/164 (43%), Positives = 110/164 (67%), Gaps = 4/164 (2%)
Query: 35 PPAHDPEVDII--INNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTA 91
P A+ P I+ + N+V + ++ C L+L+ IAL+ N EY + V M++R+P TTA
Sbjct: 78 PGANAPGSGIVPTLQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTA 137
Query: 92 SIWSSGKITCTGATSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRIL 151
I++SGK+ TGA SED SK+A+R+YAR +Q+LGF A+FT+F++ N++G+C + F IR+
Sbjct: 138 LIFASGKMVVTGAKSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLE 197
Query: 152 QFSEK-HRAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTAC 194
+ + H + YEPEL PG+ YR+ +PK L IF +G I +T
Sbjct: 198 GLASRHHNFSSYEPELFPGLIYRMMKPKIVLLIFVSGKIVLTGA 241
>gi|401886560|gb|EJT50588.1| TATA-box binding protein (Transcription initiation factor TFIID TBP
subunit) [Trichosporon asahii var. asahii CBS 2479]
gi|406698490|gb|EKD01726.1| TATA-box binding protein (Transcription initiation factor TFIID TBP
subunit) [Trichosporon asahii var. asahii CBS 8904]
Length = 231
Score = 150 bits (379), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 73/181 (40%), Positives = 115/181 (63%), Gaps = 8/181 (4%)
Query: 28 QNHAPPQPPAHDPEVDII------INNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMV 80
+N+A +P A PE+ + + N+V + ++ C L+L+ IAL+ N EY + V
Sbjct: 33 KNNAVVRPQASVPEISPVQGLVPVLQNIVATVNLECRLDLKTIALHARNAEYNPKRFAAV 92
Query: 81 TMKLRKPYTTASIWSSGKITCTGATSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLG 140
M++R+P TTA I++SGK+ TGA SED S++A+R+YAR +Q+LGF A+F F++ N++G
Sbjct: 93 VMRIREPKTTALIFASGKMVVTGAKSEDDSRLASRKYARIIQKLGFDAKFAEFKIQNIVG 152
Query: 141 TCSMPFAIRILQFSEKHRA-AEYEPELHPGVTYRITRPKATLKIFSTGGITVTACNDSNK 199
+C + F IR+ + H A + YEPEL PG+ YR+ +PK L IF +G I +T +
Sbjct: 153 SCDVKFPIRLEGLAFSHGAFSSYEPELFPGLIYRMLKPKVVLLIFVSGKIVLTGAKVREE 212
Query: 200 I 200
I
Sbjct: 213 I 213
>gi|121705502|ref|XP_001271014.1| RNA polymerase I and III transcription factor complex component
Tbp, putative [Aspergillus clavatus NRRL 1]
gi|119399160|gb|EAW09588.1| RNA polymerase I and III transcription factor complex component
Tbp, putative [Aspergillus clavatus NRRL 1]
Length = 273
Score = 150 bits (379), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 71/164 (43%), Positives = 110/164 (67%), Gaps = 4/164 (2%)
Query: 35 PPAHDPEVDII--INNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTA 91
P A+ P I+ + N+V + ++ C L+L+ IAL+ N EY + V M++R+P TTA
Sbjct: 78 PGANAPGSGIVPTLQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTA 137
Query: 92 SIWSSGKITCTGATSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRIL 151
I++SGK+ TGA SED SK+A+R+YAR +Q+LGF A+FT+F++ N++G+C + F IR+
Sbjct: 138 LIFASGKMVVTGAKSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLE 197
Query: 152 QFSEK-HRAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTAC 194
+ + H + YEPEL PG+ YR+ +PK L IF +G I +T
Sbjct: 198 GLASRHHNFSSYEPELFPGLIYRMMKPKIVLLIFVSGKIVLTGA 241
>gi|440638539|gb|ELR08458.1| TATA-box-binding protein [Geomyces destructans 20631-21]
Length = 262
Score = 150 bits (379), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 68/151 (45%), Positives = 104/151 (68%), Gaps = 2/151 (1%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGA 104
+ N+V + ++ C L+L+ IAL+ N EY + V M++R+P TTA I++SGK+ TGA
Sbjct: 89 LQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGA 148
Query: 105 TSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKHRA-AEYE 163
SED SK+A+R+YAR +Q+LGF A+FT+F++ N++G+C + F IR+ + KH + YE
Sbjct: 149 KSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASKHHNFSSYE 208
Query: 164 PELHPGVTYRITRPKATLKIFSTGGITVTAC 194
PEL PG+ YR+ +PK L IF +G I +T
Sbjct: 209 PELFPGLIYRMIKPKIVLLIFVSGKIVLTGA 239
>gi|320582327|gb|EFW96544.1| TATA-binding protein, general transcription factor [Ogataea
parapolymorpha DL-1]
Length = 246
Score = 150 bits (379), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 69/157 (43%), Positives = 104/157 (66%), Gaps = 2/157 (1%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGA 104
+ N+V + ++ C L L+ IAL+ N EY + V M++R+P TTA I++SGK+ TGA
Sbjct: 73 LQNIVATVNLDCRLELKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGA 132
Query: 105 TSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKHRA-AEYE 163
SED SK+AAR+YAR +Q+LGF A+FT+F++ N++G+C + F IR+ + H + YE
Sbjct: 133 KSEDDSKLAARKYARIIQKLGFNAKFTDFKIQNIVGSCDVKFPIRLEGLAYAHGTFSSYE 192
Query: 164 PELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
PEL PG+ YR+ +PK L IF +G I +T +I
Sbjct: 193 PELFPGLIYRMVKPKIVLLIFVSGKIVLTGAKQREEI 229
>gi|336465922|gb|EGO54087.1| hypothetical protein NEUTE1DRAFT_118055 [Neurospora tetrasperma
FGSC 2508]
gi|350287243|gb|EGZ68490.1| putative transcription initiation factor [Neurospora tetrasperma
FGSC 2509]
Length = 257
Score = 150 bits (379), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 68/151 (45%), Positives = 104/151 (68%), Gaps = 2/151 (1%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGA 104
+ N+V + ++ C L+L+ IAL+ N EY + V M++R+P TTA I++SGK+ TGA
Sbjct: 84 LQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGA 143
Query: 105 TSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEK-HRAAEYE 163
SED SK+A+R+YAR +Q+LGF A+FT+F++ N++G+C + F IR+ + K H + YE
Sbjct: 144 KSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASKHHNFSSYE 203
Query: 164 PELHPGVTYRITRPKATLKIFSTGGITVTAC 194
PEL PG+ YR+ +PK L IF +G I +T
Sbjct: 204 PELFPGLIYRMIKPKIVLLIFVSGKIVLTGA 234
>gi|85096222|ref|XP_960219.1| TATA-box binding protein [Neurospora crassa OR74A]
gi|28921702|gb|EAA30983.1| TATA-box binding protein [Neurospora crassa OR74A]
gi|39979211|emb|CAE85582.1| probable TRANSCRIPTION INITIATION FACTOR TFIID [Neurospora crassa]
Length = 257
Score = 150 bits (379), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 68/151 (45%), Positives = 104/151 (68%), Gaps = 2/151 (1%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGA 104
+ N+V + ++ C L+L+ IAL+ N EY + V M++R+P TTA I++SGK+ TGA
Sbjct: 84 LQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGA 143
Query: 105 TSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEK-HRAAEYE 163
SED SK+A+R+YAR +Q+LGF A+FT+F++ N++G+C + F IR+ + K H + YE
Sbjct: 144 KSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASKHHNFSSYE 203
Query: 164 PELHPGVTYRITRPKATLKIFSTGGITVTAC 194
PEL PG+ YR+ +PK L IF +G I +T
Sbjct: 204 PELFPGLIYRMIKPKIVLLIFVSGKIVLTGA 234
>gi|336276668|ref|XP_003353087.1| hypothetical protein SMAC_03405 [Sordaria macrospora k-hell]
gi|380092572|emb|CCC09849.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 257
Score = 150 bits (379), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 69/157 (43%), Positives = 106/157 (67%), Gaps = 2/157 (1%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGA 104
+ N+V + ++ C L+L+ IAL+ N EY + V M++R+P TTA I++SGK+ TGA
Sbjct: 84 LQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGA 143
Query: 105 TSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEK-HRAAEYE 163
SED SK+A+R+YAR +Q+LGF A+FT+F++ N++G+C + F IR+ + K H + YE
Sbjct: 144 KSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASKHHNFSSYE 203
Query: 164 PELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
PEL PG+ YR+ +PK L IF +G I +T +I
Sbjct: 204 PELFPGLIYRMIKPKIVLLIFVSGKIVLTGAKVREEI 240
>gi|355693296|gb|EHH27899.1| hypothetical protein EGK_18211 [Macaca mulatta]
Length = 376
Score = 150 bits (379), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 68/157 (43%), Positives = 109/157 (69%), Gaps = 2/157 (1%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGA 104
+ N+V + ++ C L+L++IAL+ N EY + V M++R+P TTA I+SSGK+ CTGA
Sbjct: 203 LQNIVSTVNLACKLDLKKIALHAKNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 262
Query: 105 TSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKHRA-AEYE 163
SE+QS++AAR+YAR +Q+LGF ARF +F++ N++G+C + F IR+ H+ + YE
Sbjct: 263 KSEEQSRLAARKYARVVQKLGFPARFLDFKIQNMVGSCDVRFPIRLEGLVLTHQQFSSYE 322
Query: 164 PELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
PEL PG+ YR+ +P+ L IF +G + +T + ++I
Sbjct: 323 PELFPGLIYRMVKPRIVLLIFVSGKVVLTGAKERSEI 359
>gi|171681966|ref|XP_001905926.1| hypothetical protein [Podospora anserina S mat+]
gi|170940942|emb|CAP66592.1| unnamed protein product [Podospora anserina S mat+]
Length = 255
Score = 150 bits (378), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 68/151 (45%), Positives = 104/151 (68%), Gaps = 2/151 (1%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGA 104
+ N+V + ++ C L+L+ IAL+ N EY + V M++R+P TTA I++SGK+ TGA
Sbjct: 82 LQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGA 141
Query: 105 TSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEK-HRAAEYE 163
SED SK+A+R+YAR +Q+LGF A+FT+F++ N++G+C + F IR+ + K H + YE
Sbjct: 142 KSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASKHHNFSSYE 201
Query: 164 PELHPGVTYRITRPKATLKIFSTGGITVTAC 194
PEL PG+ YR+ +PK L IF +G I +T
Sbjct: 202 PELFPGLIYRMIKPKIVLLIFVSGKIVLTGA 232
>gi|332374462|gb|AEE62372.1| unknown [Dendroctonus ponderosae]
Length = 318
Score = 150 bits (378), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 75/198 (37%), Positives = 121/198 (61%), Gaps = 8/198 (4%)
Query: 5 GMTTTHSSHSEQEPPPTQTVVPIQNHAPPQPPAHDPEVDIIINNVVCSFSVRCHLNLRQI 64
GM+ + S S P + P+ H+ DP + + N+V + ++ C L+L++I
Sbjct: 110 GMSGSTPSMSVGGPSTPSPMTPMTPHS------ADPGIVPQLQNIVSTVNLSCKLDLKKI 163
Query: 65 ALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGATSEDQSKIAARRYARCLQR 123
AL+ N EY + V M++R+P TTA I+SSGK+ CTGA SE+ S++AAR+YAR +Q+
Sbjct: 164 ALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQK 223
Query: 124 LGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKHRA-AEYEPELHPGVTYRITRPKATLK 182
LGF A+F +F++ N++G+C + F IR+ H + + YEPEL PG+ YR+ +P+ L
Sbjct: 224 LGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHSSFSSYEPELFPGLIYRMVKPRIVLL 283
Query: 183 IFSTGGITVTACNDSNKI 200
IF +G + +T +I
Sbjct: 284 IFVSGKVVLTGAKVRQEI 301
>gi|383858146|ref|XP_003704563.1| PREDICTED: TATA-box-binding protein-like [Megachile rotundata]
Length = 318
Score = 150 bits (378), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 70/171 (40%), Positives = 112/171 (65%), Gaps = 2/171 (1%)
Query: 32 PPQPPAHDPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTT 90
P P + DP + + N+V + ++ C L+L++IAL+ N EY + V M++R+P TT
Sbjct: 131 PMTPASADPGILPQLQNIVSTVNLNCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTT 190
Query: 91 ASIWSSGKITCTGATSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRI 150
A I+SSGK+ CTGA SE+ S++AAR+YAR +Q+LGF A+F +F++ N++G+C + F IR+
Sbjct: 191 ALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRL 250
Query: 151 LQFSEKH-RAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
H + + YEPEL PG+ YR+ +P+ L IF +G + +T +I
Sbjct: 251 EGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLTGAKVRQEI 301
>gi|385301759|gb|EIF45927.1| tata-box binding protein [Dekkera bruxellensis AWRI1499]
Length = 259
Score = 150 bits (378), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 69/157 (43%), Positives = 104/157 (66%), Gaps = 2/157 (1%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGA 104
+ N+V + ++ C L L+ IAL+ N EY + V M++R+P TTA I++SGK+ TGA
Sbjct: 86 LQNIVATVNLDCRLELKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGA 145
Query: 105 TSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKHRA-AEYE 163
SED SK+AAR+YAR +Q+LGF A+FT+F++ N++G+C + F IR+ + H + YE
Sbjct: 146 KSEDDSKLAARKYARIIQKLGFNAKFTDFKIQNIVGSCDVKFPIRLEGLAYAHGTFSSYE 205
Query: 164 PELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
PEL PG+ YR+ +PK L IF +G I +T +I
Sbjct: 206 PELFPGLIYRMVKPKIVLLIFVSGKIVLTGAKQREEI 242
>gi|356568214|ref|XP_003552308.1| PREDICTED: TATA-box-binding protein-like [Glycine max]
Length = 200
Score = 150 bits (378), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 70/152 (46%), Positives = 102/152 (67%), Gaps = 2/152 (1%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGA 104
+ N+V + S+ C L L+ IAL N EY + V M++R+P TTA I++SGK+ CTGA
Sbjct: 25 LQNIVSTVSLDCKLELKSIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVCTGA 84
Query: 105 TSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKHRA-AEYE 163
SE QSK+AAR+YAR +Q+LGF A+F +F++ N++G+C + F IR+ + H A + YE
Sbjct: 85 KSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYE 144
Query: 164 PELHPGVTYRITRPKATLKIFSTGGITVTACN 195
PEL PG+ YR+ +PK L IF +G I +T
Sbjct: 145 PELFPGLIYRMKQPKIVLLIFVSGKIVLTGAK 176
Score = 36.2 bits (82), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 30/63 (47%)
Query: 137 NVLGTCSMPFAIRILQFSEKHRAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTACND 196
N++ T S+ + + + + R AEY P+ V RI PK T IF++G + T
Sbjct: 27 NIVSTVSLDCKLELKSIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVCTGAKS 86
Query: 197 SNK 199
+
Sbjct: 87 EQQ 89
>gi|315055559|ref|XP_003177154.1| TATA-box-binding protein [Arthroderma gypseum CBS 118893]
gi|311339000|gb|EFQ98202.1| TATA-box-binding protein [Arthroderma gypseum CBS 118893]
Length = 257
Score = 150 bits (378), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 72/170 (42%), Positives = 110/170 (64%), Gaps = 5/170 (2%)
Query: 36 PAHDPEVDIII---NNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTA 91
P P V I+ N+V + ++ C L+L+ IAL+ N EY + V M++R+P TTA
Sbjct: 71 PGAGPGVSGIVPTLQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTA 130
Query: 92 SIWSSGKITCTGATSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRIL 151
I++SGK+ TGA SED SK+A+R+YAR +Q+LGF A+FT+F++ N++G+C + F IR+
Sbjct: 131 LIFASGKMVVTGAKSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLE 190
Query: 152 QFSEK-HRAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
+ + H + YEPEL PG+ YR+ +PK L IF +G I +T +I
Sbjct: 191 GLASRHHNFSSYEPELFPGLIYRMMKPKIVLLIFVSGKIVLTGAKVREEI 240
>gi|303317340|ref|XP_003068672.1| TATA-box-binding protein, putative [Coccidioides posadasii C735
delta SOWgp]
gi|240108353|gb|EER26527.1| TATA-box-binding protein, putative [Coccidioides posadasii C735
delta SOWgp]
gi|320038620|gb|EFW20555.1| TATA-box binding protein [Coccidioides posadasii str. Silveira]
Length = 252
Score = 150 bits (378), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 75/178 (42%), Positives = 113/178 (63%), Gaps = 8/178 (4%)
Query: 31 APPQP---PAHDPEVDIII---NNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMK 83
AP P P P V I+ N+V + ++ C L+L+ IAL+ N EY + V M+
Sbjct: 58 APATPVATPGAGPGVSGIVPTLQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMR 117
Query: 84 LRKPYTTASIWSSGKITCTGATSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCS 143
+R+P TTA I++SGK+ TGA SED SK+A+R+YAR +Q+LGF A+FT+F++ N++G+C
Sbjct: 118 IREPKTTALIFASGKMVVTGAKSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCD 177
Query: 144 MPFAIRILQFSEK-HRAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
+ F IR+ + + H + YEPEL PG+ YR+ +PK L IF +G I +T +I
Sbjct: 178 IKFPIRLEGLASRHHNFSSYEPELFPGLIYRMMKPKIVLLIFVSGKIVLTGAKVREEI 235
>gi|408395610|gb|EKJ74788.1| hypothetical protein FPSE_05036 [Fusarium pseudograminearum CS3096]
Length = 254
Score = 150 bits (378), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 76/198 (38%), Positives = 117/198 (59%), Gaps = 2/198 (1%)
Query: 5 GMTTTHSSHSEQEPPPTQTVVPIQNHAPPQPPAHDPEVDIIINNVVCSFSVRCHLNLRQI 64
G T H+ Q+ V P A P + + N+V + ++ C L+L+ I
Sbjct: 40 GDATQQPPHNGQQAANGNGVAPATPVATPAATQGPSGITPTLQNIVATVNLDCRLDLKTI 99
Query: 65 ALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGATSEDQSKIAARRYARCLQR 123
AL+ N EY + V M++R+P TTA I++SGK+ TGA SED SK+A+R+YAR +Q+
Sbjct: 100 ALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGAKSEDDSKLASRKYARIIQK 159
Query: 124 LGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKHRA-AEYEPELHPGVTYRITRPKATLK 182
LGF A+FT+F++ N++G+C + F IR+ + +H + YEPEL PG+ YR+ +PK L
Sbjct: 160 LGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASRHHNFSSYEPELFPGLIYRMIKPKIVLL 219
Query: 183 IFSTGGITVTACNDSNKI 200
IF +G I +T +I
Sbjct: 220 IFVSGKIVLTGAKVREEI 237
>gi|218184579|gb|EEC67006.1| hypothetical protein OsI_33717 [Oryza sativa Indica Group]
Length = 226
Score = 150 bits (378), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 70/157 (44%), Positives = 105/157 (66%), Gaps = 2/157 (1%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGA 104
+ N+V + ++ C L+L++IAL N EY + V M++R P TTA I++SGK+ CTGA
Sbjct: 49 LQNIVSTVNLDCRLDLKKIALQARNAEYNPKRFAAVIMRIRDPKTTALIFASGKMVCTGA 108
Query: 105 TSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKHRA-AEYE 163
SED SK+AAR+YAR +Q+LGF A+F +F++ N++G+C + F IR+ + H A + YE
Sbjct: 109 KSEDHSKLAARKYARIVQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYE 168
Query: 164 PELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
PEL PG+ YR+ +PK L IF +G I +T +I
Sbjct: 169 PELFPGLIYRMKQPKIVLLIFVSGKIVLTGAKYRKEI 205
>gi|125574885|gb|EAZ16169.1| hypothetical protein OsJ_31618 [Oryza sativa Japonica Group]
Length = 224
Score = 150 bits (378), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 70/157 (44%), Positives = 105/157 (66%), Gaps = 2/157 (1%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGA 104
+ N+V + ++ C L+L++IAL N EY + V M++R P TTA I++SGK+ CTGA
Sbjct: 47 LQNIVSTVNLDCRLDLKKIALQARNAEYNPKRFAAVIMRIRDPKTTALIFASGKMVCTGA 106
Query: 105 TSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKHRA-AEYE 163
SED SK+AAR+YAR +Q+LGF A+F +F++ N++G+C + F IR+ + H A + YE
Sbjct: 107 KSEDHSKLAARKYARIVQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYE 166
Query: 164 PELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
PEL PG+ YR+ +PK L IF +G I +T +I
Sbjct: 167 PELFPGLIYRMKQPKIVLLIFVSGKIVLTGAKYRKEI 203
>gi|259482151|tpe|CBF76358.1| TPA: TATA-box-binding protein (TATA-box factor)(TATA-binding
factor)(TATA sequence-binding
protein)(TBP)(Transcription initiation factor TFIID TBP
subunit) [Source:UniProtKB/Swiss-Prot;Acc:Q12731]
[Aspergillus nidulans FGSC A4]
Length = 284
Score = 150 bits (378), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 71/164 (43%), Positives = 109/164 (66%), Gaps = 4/164 (2%)
Query: 35 PPAHDPEVDII--INNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTA 91
P A P I+ + N+V + ++ C L+L+ IAL+ N EY + V M++R+P TTA
Sbjct: 82 PGASAPGSGIVPTLQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTA 141
Query: 92 SIWSSGKITCTGATSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRIL 151
I++SGK+ TGA SED SK+A+R+YAR +Q+LGF A+FT+F++ N++G+C + F IR+
Sbjct: 142 LIFASGKMVVTGAKSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLE 201
Query: 152 QFSEK-HRAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTAC 194
+ + H + YEPEL PG+ YR+ +PK L IF +G I +T
Sbjct: 202 GLASRHHNFSSYEPELFPGLIYRMMKPKIVLLIFVSGKIVLTGA 245
>gi|20799106|dbj|BAB92075.1| TATA binding protein [Hemicentrotus pulcherrimus]
Length = 250
Score = 150 bits (378), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 75/187 (40%), Positives = 117/187 (62%), Gaps = 6/187 (3%)
Query: 20 PTQTVVPIQNHAP--PQPPAHDPEVDII--INNVVCSFSVRCHLNLRQIALNGVNVEYR- 74
P + +P AP P PA I+ + N+V + ++ C L+L++IAL+ N EY
Sbjct: 46 PGSSFIPPSPMAPLTPATPASSESSGIVPQLQNIVSTVNLNCRLDLKKIALHARNAEYNP 105
Query: 75 RENGMVTMKLRKPYTTASIWSSGKITCTGATSEDQSKIAARRYARCLQRLGFKARFTNFR 134
+ V M++R+P TTA I+SSGK+ CTGA SED S++AAR+YAR +Q+LGF A+F +F+
Sbjct: 106 KRFAAVIMRIREPRTTALIFSSGKMVCTGAKSEDDSRLAARKYARVVQKLGFAAKFLDFK 165
Query: 135 VVNVLGTCSMPFAIRILQFSEKH-RAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTA 193
+ N++G+C + F IR+ H + + YEPEL PG+ YR+ +P+ L IF +G + +T
Sbjct: 166 IQNMVGSCDVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLTG 225
Query: 194 CNDSNKI 200
+I
Sbjct: 226 AKVRQEI 232
>gi|256089271|ref|XP_002580736.1| TATA-box binding protein [Schistosoma mansoni]
gi|350646100|emb|CCD59202.1| TATA-box binding protein, putative [Schistosoma mansoni]
Length = 271
Score = 150 bits (378), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 73/158 (46%), Positives = 108/158 (68%), Gaps = 4/158 (2%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGA 104
+ N+VC+ + C LNL+ IAL+ N EY + V M++R+P TTA I+SSGK+ CTGA
Sbjct: 80 LQNIVCTVYLGCKLNLKNIALSARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 139
Query: 105 TSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRI--LQFSEKHRAAEY 162
SE+Q+++AAR+YAR +QRLGF+A F F++ N++G+C + F IR+ L S+ + A Y
Sbjct: 140 KSEEQARLAARKYARIIQRLGFEAHFKEFKIQNMVGSCDVRFHIRLEGLVLSQG-QFATY 198
Query: 163 EPELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
EPEL PG+ YR+T+PK L +F +G I +T +I
Sbjct: 199 EPELFPGLIYRMTKPKIVLLVFVSGKIVLTGAKVREEI 236
>gi|296215093|ref|XP_002807283.1| PREDICTED: LOW QUALITY PROTEIN: TATA box-binding protein-like
protein 2 [Callithrix jacchus]
Length = 373
Score = 150 bits (378), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 68/157 (43%), Positives = 109/157 (69%), Gaps = 2/157 (1%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGA 104
+ N+V + ++ C L+L++IAL+ N EY + V M++R+P TTA I+SSGK+ CTGA
Sbjct: 200 LQNIVSTVNLACKLDLKKIALHAKNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 259
Query: 105 TSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKHRA-AEYE 163
SE+QS++AAR+YAR +Q+LGF ARF +F++ N++G+C + F IR+ H+ + YE
Sbjct: 260 RSEEQSRLAARKYARVVQKLGFPARFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSYE 319
Query: 164 PELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
PEL PG+ YR+ +P+ L IF +G + +T + ++I
Sbjct: 320 PELFPGLIYRMVKPRIVLLIFVSGKVVLTGAKERSEI 356
>gi|3122925|sp|Q12731.1|TBP_EMENI RecName: Full=TATA-box-binding protein; AltName: Full=TATA
sequence-binding protein; Short=TBP; AltName:
Full=TATA-binding factor; AltName: Full=TATA-box factor;
AltName: Full=Transcription initiation factor TFIID TBP
subunit
gi|887878|gb|AAB57874.1| TATA-box binding protein [Emericella nidulans]
gi|887880|gb|AAB57876.1| TATA-box binding protein [Emericella nidulans]
Length = 268
Score = 150 bits (378), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 71/164 (43%), Positives = 109/164 (66%), Gaps = 4/164 (2%)
Query: 35 PPAHDPEVDII--INNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTA 91
P A P I+ + N+V + ++ C L+L+ IAL+ N EY + V M++R+P TTA
Sbjct: 82 PGASAPGSGIVPTLQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTA 141
Query: 92 SIWSSGKITCTGATSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRIL 151
I++SGK+ TGA SED SK+A+R+YAR +Q+LGF A+FT+F++ N++G+C + F IR+
Sbjct: 142 LIFASGKMVVTGAKSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLE 201
Query: 152 QFSEK-HRAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTAC 194
+ + H + YEPEL PG+ YR+ +PK L IF +G I +T
Sbjct: 202 GLASRHHNFSSYEPELFPGLIYRMMKPKIVLLIFVSGKIVLTGA 245
>gi|380027888|ref|XP_003697647.1| PREDICTED: TATA-box-binding protein-like [Apis florea]
Length = 319
Score = 150 bits (378), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 70/171 (40%), Positives = 112/171 (65%), Gaps = 2/171 (1%)
Query: 32 PPQPPAHDPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTT 90
P P + DP + + N+V + ++ C L+L++IAL+ N EY + V M++R+P TT
Sbjct: 132 PMTPASADPGILPQLQNIVSTVNLNCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTT 191
Query: 91 ASIWSSGKITCTGATSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRI 150
A I+SSGK+ CTGA SE+ S++AAR+YAR +Q+LGF A+F +F++ N++G+C + F IR+
Sbjct: 192 ALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRL 251
Query: 151 LQFSEKH-RAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
H + + YEPEL PG+ YR+ +P+ L IF +G + +T +I
Sbjct: 252 EGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLTGAKVRQEI 302
>gi|66536790|ref|XP_623088.1| PREDICTED: TATA-box-binding protein-like isoform 1 [Apis mellifera]
Length = 319
Score = 150 bits (378), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 70/171 (40%), Positives = 112/171 (65%), Gaps = 2/171 (1%)
Query: 32 PPQPPAHDPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTT 90
P P + DP + + N+V + ++ C L+L++IAL+ N EY + V M++R+P TT
Sbjct: 132 PMTPASADPGILPQLQNIVSTVNLNCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTT 191
Query: 91 ASIWSSGKITCTGATSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRI 150
A I+SSGK+ CTGA SE+ S++AAR+YAR +Q+LGF A+F +F++ N++G+C + F IR+
Sbjct: 192 ALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRL 251
Query: 151 LQFSEKH-RAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
H + + YEPEL PG+ YR+ +P+ L IF +G + +T +I
Sbjct: 252 EGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLTGAKVRQEI 302
>gi|255552716|ref|XP_002517401.1| TATA-box binding protein, putative [Ricinus communis]
gi|223543412|gb|EEF44943.1| TATA-box binding protein, putative [Ricinus communis]
Length = 190
Score = 150 bits (378), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 72/153 (47%), Positives = 106/153 (69%), Gaps = 3/153 (1%)
Query: 45 IINNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTG 103
I+ N+V + ++ C L+L+ IAL+ N EY R V M+LR P TTA +++SGK+ CTG
Sbjct: 16 ILQNIVSTVNLDCKLDLKDIALHSRNSEYNPRRFSAVIMRLRDPKTTALLFASGKMVCTG 75
Query: 104 ATSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQF-SEKHRA-AE 161
A SE QSKIAAR+YAR +Q+LGF A+F +F++ N++ +C + F IR+ +F KH A +
Sbjct: 76 AKSEAQSKIAARKYARIVQKLGFPAKFKDFKIQNIVASCDVNFRIRLEKFVYSKHAAFSS 135
Query: 162 YEPELHPGVTYRITRPKATLKIFSTGGITVTAC 194
YEPE+ PG+ YR+T+PK + IF +G I +T
Sbjct: 136 YEPEIFPGMIYRMTKPKIVMLIFVSGKIVITGA 168
>gi|390333257|ref|XP_795391.3| PREDICTED: TATA-box-binding protein-like [Strongylocentrotus
purpuratus]
Length = 262
Score = 149 bits (377), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 75/187 (40%), Positives = 117/187 (62%), Gaps = 6/187 (3%)
Query: 20 PTQTVVPIQNHAP--PQPPAHDPEVDII--INNVVCSFSVRCHLNLRQIALNGVNVEYR- 74
P + +P AP P PA I+ + N+V + ++ C L+L++IAL+ N EY
Sbjct: 58 PGSSFIPPSPMAPLTPATPASSESSGIVPQLQNIVSTVNLNCRLDLKKIALHARNAEYNP 117
Query: 75 RENGMVTMKLRKPYTTASIWSSGKITCTGATSEDQSKIAARRYARCLQRLGFKARFTNFR 134
+ V M++R+P TTA I+SSGK+ CTGA SED S++AAR+YAR +Q+LGF A+F +F+
Sbjct: 118 KRFAAVIMRIREPRTTALIFSSGKMVCTGAKSEDDSRLAARKYARVVQKLGFAAKFLDFK 177
Query: 135 VVNVLGTCSMPFAIRILQFSEKH-RAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTA 193
+ N++G+C + F IR+ H + + YEPEL PG+ YR+ +P+ L IF +G + +T
Sbjct: 178 IQNMVGSCDVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLTG 237
Query: 194 CNDSNKI 200
+I
Sbjct: 238 AKVRQEI 244
>gi|452839378|gb|EME41317.1| TATA-box binding-like protein [Dothistroma septosporum NZE10]
Length = 254
Score = 149 bits (377), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 68/157 (43%), Positives = 106/157 (67%), Gaps = 2/157 (1%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGA 104
+ N+V + ++ C L+L+ IAL+ N EY + V M++R+P TTA I++SGK+ TGA
Sbjct: 81 LQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGA 140
Query: 105 TSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKHRA-AEYE 163
SED SK+A+R+YAR +Q+LGF A+FT+F++ N++G+C + F IR+ + +H + YE
Sbjct: 141 KSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASRHHMFSSYE 200
Query: 164 PELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
PEL PG+ YR+ +PK L IF +G I +T +I
Sbjct: 201 PELFPGLIYRMMKPKIVLLIFVSGKIVLTGAKVREEI 237
>gi|326471025|gb|EGD95034.1| TATA-box-binding protein [Trichophyton tonsurans CBS 112818]
Length = 257
Score = 149 bits (377), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 72/170 (42%), Positives = 110/170 (64%), Gaps = 5/170 (2%)
Query: 36 PAHDPEVDIII---NNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTA 91
P P V I+ N+V + ++ C L+L+ IAL+ N EY + V M++R+P TTA
Sbjct: 71 PGAGPGVSGIVPTLQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTA 130
Query: 92 SIWSSGKITCTGATSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRIL 151
I++SGK+ TGA SED SK+A+R+YAR +Q+LGF A+FT+F++ N++G+C + F IR+
Sbjct: 131 LIFASGKMVVTGAKSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLE 190
Query: 152 QFSEKHR-AAEYEPELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
+ +H + YEPEL PG+ YR+ +PK L IF +G I +T +I
Sbjct: 191 GLASRHHNFSSYEPELFPGLIYRMMKPKIVLLIFVSGKIVLTGAKVREEI 240
>gi|18481630|gb|AAL73490.1|AF464907_1 TATA-binding protein TBP2 [Oryza sativa]
Length = 203
Score = 149 bits (377), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 69/152 (45%), Positives = 103/152 (67%), Gaps = 2/152 (1%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGA 104
+ N+V + ++ C L+L+ IAL N EY + V M++R+P TTA I++SGK+ CTGA
Sbjct: 28 LQNIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVCTGA 87
Query: 105 TSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKHRA-AEYE 163
SE QSK+AAR+YAR +Q+LGF A+F +F++ N++G+C + F IR+ + H A + YE
Sbjct: 88 KSEQQSKLAARKYARIIQKLGFPAKFKDFKIXNIVGSCDVKFPIRLEGLAYSHGAFSSYE 147
Query: 164 PELHPGVTYRITRPKATLKIFSTGGITVTACN 195
PEL PG+ YR+ +PK L IF +G I +T
Sbjct: 148 PELFPGLIYRMKQPKIVLLIFVSGKIVLTGAK 179
>gi|115489282|ref|NP_001067128.1| Os12g0580300 [Oryza sativa Japonica Group]
gi|77556288|gb|ABA99084.1| TATA-binding protein 2, putative, expressed [Oryza sativa Japonica
Group]
gi|113649635|dbj|BAF30147.1| Os12g0580300 [Oryza sativa Japonica Group]
gi|215736829|dbj|BAG95758.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 208
Score = 149 bits (377), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 69/152 (45%), Positives = 103/152 (67%), Gaps = 2/152 (1%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGA 104
+ N+V + ++ C L+L+ IAL N EY + V M++R+P TTA I++SGK+ CTGA
Sbjct: 33 LQNIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVCTGA 92
Query: 105 TSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKHRA-AEYE 163
SE QSK+AAR+YAR +Q+LGF A+F +F++ N++G+C + F IR+ + H A + YE
Sbjct: 93 KSEQQSKLAARKYARIIQKLGFAAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYE 152
Query: 164 PELHPGVTYRITRPKATLKIFSTGGITVTACN 195
PEL PG+ YR+ +PK L IF +G I +T
Sbjct: 153 PELFPGLIYRMKQPKIVLLIFVSGKIVLTGAK 184
>gi|358332952|dbj|GAA51533.1| transcription initiation factor TFIID TATA-box-binding protein
[Clonorchis sinensis]
Length = 696
Score = 149 bits (377), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 73/154 (47%), Positives = 102/154 (66%), Gaps = 2/154 (1%)
Query: 40 PEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYRRENGMVTMKLRKPYTTASIWSSGKI 99
P + + I NVV S+RCHL L++IA + V+VEY+ V M+LR PYT A+IWSSGKI
Sbjct: 60 PSLTLSITNVVVMASMRCHLRLKEIARSSVDVEYKALQNHVIMRLRSPYTVATIWSSGKI 119
Query: 100 TCTGATSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQF-SEKHR 158
CTGA S ++K ARR AR + + GF RF+ +RVVN++ TC +PF +R+ + EK
Sbjct: 120 WCTGANSLAKAKTGARRIARRIAKCGFPCRFSKYRVVNIMATCHLPFRVRLEELVKEKPM 179
Query: 159 AAEYEPELHPGVTYRITRPKAT-LKIFSTGGITV 191
YEPEL PG+T++ +T LK+FSTG + +
Sbjct: 180 QMCYEPELAPGLTFKTDLNSSTLLKVFSTGRVVI 213
>gi|296824240|ref|XP_002850621.1| TATA-box-binding protein [Arthroderma otae CBS 113480]
gi|238838175|gb|EEQ27837.1| TATA-box-binding protein [Arthroderma otae CBS 113480]
Length = 266
Score = 149 bits (377), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 72/170 (42%), Positives = 110/170 (64%), Gaps = 5/170 (2%)
Query: 36 PAHDPEVDIII---NNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTA 91
P P V I+ N+V + ++ C L+L+ IAL+ N EY + V M++R+P TTA
Sbjct: 80 PGAGPGVSGIVPTLQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTA 139
Query: 92 SIWSSGKITCTGATSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRIL 151
I++SGK+ TGA SED SK+A+R+YAR +Q+LGF A+FT+F++ N++G+C + F IR+
Sbjct: 140 LIFASGKMVVTGAKSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLE 199
Query: 152 QFSEK-HRAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
+ + H + YEPEL PG+ YR+ +PK L IF +G I +T +I
Sbjct: 200 GLASRHHNFSSYEPELFPGLIYRMMKPKIVLLIFVSGKIVLTGAKVREEI 249
>gi|135640|sp|P26357.1|TBP_SOLTU RecName: Full=TATA-box-binding protein; AltName: Full=TATA
sequence-binding protein; Short=TBP; AltName:
Full=TATA-binding factor; AltName: Full=TATA-box factor;
AltName: Full=Transcription initiation factor TFIID TBP
subunit
gi|21581|emb|CAA44360.1| TATA-binding protein [Solanum tuberosum]
Length = 200
Score = 149 bits (377), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 69/152 (45%), Positives = 103/152 (67%), Gaps = 2/152 (1%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGA 104
+ N+V + ++ C L+L+ IAL N EY + V M++R+P TTA I++SGK+ CTGA
Sbjct: 25 LQNIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVCTGA 84
Query: 105 TSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKHRA-AEYE 163
SE QSK+AAR+YAR +Q+LGF A+F +F++ N++G+C + F IR+ + H A + YE
Sbjct: 85 KSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYAHGAFSSYE 144
Query: 164 PELHPGVTYRITRPKATLKIFSTGGITVTACN 195
PEL PG+ YR+ +PK L IF +G I +T
Sbjct: 145 PELFPGLIYRMKQPKIVLLIFVSGKIVITGAK 176
>gi|357612491|gb|EHJ68026.1| TATA-box-binding protein [Danaus plexippus]
Length = 306
Score = 149 bits (377), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 70/171 (40%), Positives = 112/171 (65%), Gaps = 2/171 (1%)
Query: 32 PPQPPAHDPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTT 90
P P + DP + + N+V + ++ C L+L++IAL+ N EY + V M++R+P TT
Sbjct: 119 PMTPHSADPGILPQLQNIVSTVNLNCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTT 178
Query: 91 ASIWSSGKITCTGATSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRI 150
A I+SSGK+ CTGA SE+ S++AAR+YAR +Q+LGF A+F +F++ N++G+C + F IR+
Sbjct: 179 ALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFTAKFLDFKIQNMVGSCDVKFPIRL 238
Query: 151 LQFSEKH-RAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
H + + YEPEL PG+ YR+ +P+ L IF +G + +T +I
Sbjct: 239 EGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLTGAKVRQEI 289
>gi|398406521|ref|XP_003854726.1| transcription factor TFIID complex [Zymoseptoria tritici IPO323]
gi|339474610|gb|EGP89702.1| transcription factor TFIID complex [Zymoseptoria tritici IPO323]
Length = 261
Score = 149 bits (377), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 68/157 (43%), Positives = 106/157 (67%), Gaps = 2/157 (1%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGA 104
+ N+V + ++ C L+L+ IAL+ N EY + V M++R+P TTA I++SGK+ TGA
Sbjct: 88 LQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGA 147
Query: 105 TSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKHRA-AEYE 163
SED SK+A+R+YAR +Q+LGF A+FT+F++ N++G+C + F IR+ + +H + YE
Sbjct: 148 KSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASRHHMFSSYE 207
Query: 164 PELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
PEL PG+ YR+ +PK L IF +G I +T +I
Sbjct: 208 PELFPGLIYRMMKPKIVLLIFVSGKIVLTGAKVREEI 244
>gi|307182447|gb|EFN69682.1| TATA-box-binding protein [Camponotus floridanus]
Length = 305
Score = 149 bits (377), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 70/171 (40%), Positives = 111/171 (64%), Gaps = 2/171 (1%)
Query: 32 PPQPPAHDPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTT 90
P P + DP + + N+V + ++ C L+L++IAL+ N EY + V M++R+P TT
Sbjct: 118 PMTPASADPGILPQLQNIVSTVNLNCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTT 177
Query: 91 ASIWSSGKITCTGATSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRI 150
A I+SSGK+ CTGA SE S++AAR+YAR +Q+LGF A+F +F++ N++G+C + F IR+
Sbjct: 178 ALIFSSGKMVCTGAKSEGDSRLAARKYARIIQKLGFPAKFIDFKIQNMVGSCDVKFPIRL 237
Query: 151 LQFSEKH-RAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
H + + YEPEL PG+ YR+ +P+ L IF +G + +T +I
Sbjct: 238 EGLVLSHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLTGAKIRKEI 288
>gi|168052908|ref|XP_001778881.1| TATA-box binding protein, component of TFIID and TFIIIB
[Physcomitrella patens subsp. patens]
gi|162669750|gb|EDQ56331.1| TATA-box binding protein, component of TFIID and TFIIIB
[Physcomitrella patens subsp. patens]
Length = 200
Score = 149 bits (377), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 70/158 (44%), Positives = 109/158 (68%), Gaps = 4/158 (2%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGA 104
+ N+V + ++ C L+L++IAL N EY + V M++R+P TTA I++SGK+ CTGA
Sbjct: 25 LQNIVSTVNMDCRLDLKKIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVCTGA 84
Query: 105 TSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRI--LQFSEKHRAAEY 162
SE QSK+AAR+YAR +Q+LGF+A F +F++ N++G+C + F IR+ L ++ H ++ Y
Sbjct: 85 KSEQQSKLAARKYARIIQKLGFQAHFKDFKIQNIVGSCDVKFPIRLEGLAYAHGHFSS-Y 143
Query: 163 EPELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
EPEL PG+ YR+ +PK L IF +G I +T ++I
Sbjct: 144 EPELFPGLIYRMKQPKIVLLIFVSGKIVLTGAKVRDEI 181
>gi|357155673|ref|XP_003577198.1| PREDICTED: TATA-box-binding protein 2-like [Brachypodium
distachyon]
Length = 202
Score = 149 bits (377), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 69/153 (45%), Positives = 104/153 (67%), Gaps = 2/153 (1%)
Query: 45 IINNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTG 103
++ N+V + ++ C L+L+ IAL N EY + V M++R+P TTA I++SGK+ CTG
Sbjct: 26 MLQNIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVCTG 85
Query: 104 ATSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKHRA-AEY 162
A SE QSK+AAR+YAR +Q+LGF A+F +F++ N++G+C + F IR+ + H A + Y
Sbjct: 86 AKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSY 145
Query: 163 EPELHPGVTYRITRPKATLKIFSTGGITVTACN 195
EPEL PG+ YR+ +PK L IF +G I +T
Sbjct: 146 EPELFPGLIYRMRQPKIVLLIFVSGKIVLTGAK 178
>gi|156053057|ref|XP_001592455.1| TATA-box binding protein [Sclerotinia sclerotiorum 1980]
gi|154704474|gb|EDO04213.1| TATA-box binding protein [Sclerotinia sclerotiorum 1980 UF-70]
Length = 251
Score = 149 bits (377), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 68/157 (43%), Positives = 105/157 (66%), Gaps = 2/157 (1%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGA 104
+ N+V + ++ C L+L+ IAL+ N EY + V M++R P TTA I++SGK+ TGA
Sbjct: 78 LQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIRDPKTTALIFASGKMVVTGA 137
Query: 105 TSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKH-RAAEYE 163
SED SK+A+R+YAR +Q+LGF A+FT+F++ N++G+C + F IR+ + +H + YE
Sbjct: 138 KSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASRHMNFSSYE 197
Query: 164 PELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
PEL PG+ YR+ +PK L IF +G I +T +I
Sbjct: 198 PELFPGLIYRMMKPKIVLLIFVSGKIVLTGAKVREEI 234
>gi|162459891|ref|NP_001105318.1| TATA-box-binding protein 1 [Zea mays]
gi|1729907|sp|P50158.1|TBP1_MAIZE RecName: Full=TATA-box-binding protein 1; AltName: Full=TATA
sequence-binding protein 1; Short=TBP-1; AltName:
Full=TATA-binding factor 1; AltName: Full=TATA-box
factor 1; AltName: Full=Transcription initiation factor
TFIID TBP-1 subunit
gi|293904|gb|AAA65941.1| TATA-binding protein [Zea mays]
gi|414872053|tpg|DAA50610.1| TPA: TATA-box-binding protein 1(TATA-binding factor 1)(TATA
sequence-binding protein 1) [Zea mays]
Length = 200
Score = 149 bits (376), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 69/152 (45%), Positives = 103/152 (67%), Gaps = 2/152 (1%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGA 104
+ N+V + ++ C L+L+ IAL N EY + V M++R+P TTA I++SGK+ CTGA
Sbjct: 25 LQNIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVCTGA 84
Query: 105 TSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKHRA-AEYE 163
SE QSK+AAR+YAR +Q+LGF A+F +F++ N++G+C + F IR+ + H A + YE
Sbjct: 85 KSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYE 144
Query: 164 PELHPGVTYRITRPKATLKIFSTGGITVTACN 195
PEL PG+ YR+ +PK L IF +G I +T
Sbjct: 145 PELFPGLIYRMKQPKIVLLIFVSGKIVLTGAK 176
>gi|269980507|gb|ACZ56425.1| TATA-binding protein [Litopenaeus vannamei]
Length = 300
Score = 149 bits (376), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 71/171 (41%), Positives = 111/171 (64%), Gaps = 2/171 (1%)
Query: 32 PPQPPAHDPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTT 90
P P + DP + + N+V + ++ C L L++IAL+ N EY + V M++R+P TT
Sbjct: 113 PMTPHSADPGIVPQLQNIVSTVNLSCKLELKKIALHARNAEYNPKRFAAVIMRIREPRTT 172
Query: 91 ASIWSSGKITCTGATSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRI 150
A I+SSGK+ CTGA SE S++AAR+YAR +Q+LGF A+F +F++ N++G+C + F IR+
Sbjct: 173 ALIFSSGKMVCTGAKSEQDSRLAARKYARIVQKLGFPAKFMDFKIQNMVGSCDVKFPIRL 232
Query: 151 LQFSEKH-RAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
H + + YEPEL PG+ YR+ +P+ L IF +G + +T N+I
Sbjct: 233 EGLVLTHSQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLTGAKVRNQI 283
>gi|212526960|ref|XP_002143637.1| RNA polymerase I and III transcription factor complex component
Tbp, putative [Talaromyces marneffei ATCC 18224]
gi|212526962|ref|XP_002143638.1| RNA polymerase I and III transcription factor complex component
Tbp, putative [Talaromyces marneffei ATCC 18224]
gi|212526964|ref|XP_002143639.1| RNA polymerase I and III transcription factor complex component
Tbp, putative [Talaromyces marneffei ATCC 18224]
gi|62956011|gb|AAY23352.1| TATA-binding protein [Talaromyces marneffei]
gi|62956013|gb|AAY23353.1| TATA-binding protein [Talaromyces marneffei]
gi|210073035|gb|EEA27122.1| RNA polymerase I and III transcription factor complex component
Tbp, putative [Talaromyces marneffei ATCC 18224]
gi|210073036|gb|EEA27123.1| RNA polymerase I and III transcription factor complex component
Tbp, putative [Talaromyces marneffei ATCC 18224]
gi|210073037|gb|EEA27124.1| RNA polymerase I and III transcription factor complex component
Tbp, putative [Talaromyces marneffei ATCC 18224]
Length = 255
Score = 149 bits (376), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 72/175 (41%), Positives = 111/175 (63%), Gaps = 9/175 (5%)
Query: 29 NHAPPQPPAHDPEVDII-------INNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMV 80
N P PA P + + + N+V + ++ C L+L+ IAL+ N EY + V
Sbjct: 58 NGVTPATPAATPGANNVGSGIVPTLQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAV 117
Query: 81 TMKLRKPYTTASIWSSGKITCTGATSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLG 140
M++R+P TTA I++SGK+ TGA SED SK+A+R+YAR +Q+LGF A+FT+F++ N++G
Sbjct: 118 IMRIREPKTTALIFASGKMVVTGAKSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVG 177
Query: 141 TCSMPFAIRILQFSEK-HRAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTAC 194
+C + F IR+ + + H + YEPEL PG+ YR+ +PK L IF +G I +T
Sbjct: 178 SCDIKFPIRLEGLASRHHNFSSYEPELFPGLIYRMMKPKIVLLIFVSGKIVLTGA 232
>gi|242782217|ref|XP_002479956.1| RNA polymerase I and III transcription factor complex component
Tbp, putative [Talaromyces stipitatus ATCC 10500]
gi|242782222|ref|XP_002479957.1| RNA polymerase I and III transcription factor complex component
Tbp, putative [Talaromyces stipitatus ATCC 10500]
gi|218720103|gb|EED19522.1| RNA polymerase I and III transcription factor complex component
Tbp, putative [Talaromyces stipitatus ATCC 10500]
gi|218720104|gb|EED19523.1| RNA polymerase I and III transcription factor complex component
Tbp, putative [Talaromyces stipitatus ATCC 10500]
Length = 255
Score = 149 bits (376), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 72/175 (41%), Positives = 111/175 (63%), Gaps = 9/175 (5%)
Query: 29 NHAPPQPPAHDPEVDII-------INNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMV 80
N P PA P + + + N+V + ++ C L+L+ IAL+ N EY + V
Sbjct: 58 NGVTPATPAATPGANNVGSGIVPTLQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAV 117
Query: 81 TMKLRKPYTTASIWSSGKITCTGATSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLG 140
M++R+P TTA I++SGK+ TGA SED SK+A+R+YAR +Q+LGF A+FT+F++ N++G
Sbjct: 118 IMRIREPKTTALIFASGKMVVTGAKSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVG 177
Query: 141 TCSMPFAIRILQFSEK-HRAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTAC 194
+C + F IR+ + + H + YEPEL PG+ YR+ +PK L IF +G I +T
Sbjct: 178 SCDIKFPIRLEGLASRHHNFSSYEPELFPGLIYRMMKPKIVLLIFVSGKIVLTGA 232
>gi|392870835|gb|EAS32669.2| TATA-box-binding protein [Coccidioides immitis RS]
Length = 299
Score = 149 bits (376), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 75/178 (42%), Positives = 113/178 (63%), Gaps = 8/178 (4%)
Query: 31 APPQP---PAHDPEVDIII---NNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMK 83
AP P P P V I+ N+V + ++ C L+L+ IAL+ N EY + V M+
Sbjct: 105 APATPVATPGAGPGVSGIVPTLQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMR 164
Query: 84 LRKPYTTASIWSSGKITCTGATSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCS 143
+R+P TTA I++SGK+ TGA SED SK+A+R+YAR +Q+LGF A+FT+F++ N++G+C
Sbjct: 165 IREPKTTALIFASGKMVVTGAKSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCD 224
Query: 144 MPFAIRILQFSEK-HRAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
+ F IR+ + + H + YEPEL PG+ YR+ +PK L IF +G I +T +I
Sbjct: 225 IKFPIRLEGLASRHHNFSSYEPELFPGLIYRMMKPKIVLLIFVSGKIVLTGAKVREEI 282
>gi|449296869|gb|EMC92888.1| hypothetical protein BAUCODRAFT_76816 [Baudoinia compniacensis UAMH
10762]
Length = 240
Score = 149 bits (376), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 68/157 (43%), Positives = 106/157 (67%), Gaps = 2/157 (1%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGA 104
+ N+V + ++ C L+L+ IAL+ N EY + V M++R+P TTA I++SGK+ TGA
Sbjct: 67 LQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGA 126
Query: 105 TSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKHRA-AEYE 163
SED SK+A+R+YAR +Q+LGF A+FT+F++ N++G+C + F IR+ + +H + YE
Sbjct: 127 KSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASRHHMFSSYE 186
Query: 164 PELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
PEL PG+ YR+ +PK L IF +G I +T +I
Sbjct: 187 PELFPGLIYRMMKPKIVLLIFVSGKIVLTGAKVREEI 223
>gi|361131465|gb|EHL03148.1| putative TATA-box-binding protein [Glarea lozoyensis 74030]
Length = 255
Score = 149 bits (376), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 68/157 (43%), Positives = 106/157 (67%), Gaps = 2/157 (1%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGA 104
+ N+V + ++ C L+L+ IAL+ N EY + V M++R+P TTA I++SGK+ TGA
Sbjct: 82 LQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGA 141
Query: 105 TSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKHR-AAEYE 163
SED SK+A+R+YAR +Q+LGF A+FT+F++ N++G+C + F IR+ + +H + YE
Sbjct: 142 KSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASRHHNFSSYE 201
Query: 164 PELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
PEL PG+ YR+ +PK L IF +G I +T +I
Sbjct: 202 PELFPGLIYRMIKPKIVLLIFVSGKIVLTGAKVREEI 238
>gi|345803952|ref|XP_853710.2| PREDICTED: TATA box binding protein like 2 [Canis lupus familiaris]
Length = 431
Score = 149 bits (376), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 68/157 (43%), Positives = 109/157 (69%), Gaps = 2/157 (1%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGA 104
+ N+V + ++ C L+L++IAL+ N EY + V M++R+P TTA I+SSGK+ CTGA
Sbjct: 258 LQNIVSTVNLACKLDLKKIALHAKNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 317
Query: 105 TSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKHRA-AEYE 163
SE+QS++AAR+YAR +Q+LGF ARF +F++ N++G+C + FAI + H+ + YE
Sbjct: 318 KSEEQSRLAARKYARVVQKLGFPARFLDFKIQNMVGSCDVRFAISLEGLVLTHQQFSSYE 377
Query: 164 PELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
PEL PG+ YR+ +P+ L IF +G + +T + ++I
Sbjct: 378 PELFPGLIYRMVKPRIVLLIFVSGKVVLTGAKERSEI 414
>gi|154318373|ref|XP_001558505.1| transcription initiation factor TFIID, TATA binding protein
[Botryotinia fuckeliana B05.10]
gi|347837614|emb|CCD52186.1| similar to transcription initiation factor TFIID [Botryotinia
fuckeliana]
Length = 251
Score = 149 bits (376), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 67/151 (44%), Positives = 103/151 (68%), Gaps = 2/151 (1%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGA 104
+ N+V + ++ C L+L+ IAL+ N EY + V M++R P TTA I++SGK+ TGA
Sbjct: 78 LQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIRDPKTTALIFASGKMVVTGA 137
Query: 105 TSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKH-RAAEYE 163
SED SK+A+R+YAR +Q+LGF A+FT+F++ N++G+C + F IR+ + +H + YE
Sbjct: 138 KSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASRHMNFSSYE 197
Query: 164 PELHPGVTYRITRPKATLKIFSTGGITVTAC 194
PEL PG+ YR+ +PK L IF +G I +T
Sbjct: 198 PELFPGLIYRMMKPKIVLLIFVSGKIVLTGA 228
>gi|67537612|ref|XP_662580.1| TF22_MAIZE Transcription initiation factor TFIID-2 (TATA-box factor
2) (TATA sequence-binding protein 2) (TBP-2)
[Aspergillus nidulans FGSC A4]
gi|40741864|gb|EAA61054.1| TF22_MAIZE Transcription initiation factor TFIID-2 (TATA-box factor
2) (TATA sequence-binding protein 2) (TBP-2)
[Aspergillus nidulans FGSC A4]
Length = 211
Score = 149 bits (376), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 72/170 (42%), Positives = 111/170 (65%), Gaps = 4/170 (2%)
Query: 35 PPAHDPEVDII--INNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTA 91
P A P I+ + N+V + ++ C L+L+ IAL+ N EY + V M++R+P TTA
Sbjct: 9 PGASAPGSGIVPTLQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTA 68
Query: 92 SIWSSGKITCTGATSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRIL 151
I++SGK+ TGA SED SK+A+R+YAR +Q+LGF A+FT+F++ N++G+C + F IR+
Sbjct: 69 LIFASGKMVVTGAKSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLE 128
Query: 152 QFSEK-HRAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
+ + H + YEPEL PG+ YR+ +PK L IF +G I +T +I
Sbjct: 129 GLASRHHNFSSYEPELFPGLIYRMMKPKIVLLIFVSGKIVLTGAKVREEI 178
>gi|3122921|sp|O17488.1|TBP_ARTSF RecName: Full=TATA-box-binding protein; AltName: Full=TATA
sequence-binding protein; Short=TBP; AltName:
Full=TATA-binding factor; AltName: Full=TATA-box factor;
AltName: Full=Transcription initiation factor TFIID TBP
subunit
gi|2623958|emb|CAA05488.1| TATA-binding protein [Artemia franciscana]
Length = 275
Score = 149 bits (376), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 72/174 (41%), Positives = 113/174 (64%), Gaps = 4/174 (2%)
Query: 31 APPQPPAH--DPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKP 87
A P PA DP + ++ N+V + ++ C L+L++IAL N EY + V M++R+P
Sbjct: 86 ATPHTPASVADPGIIPVLENIVSTVNLGCRLDLKKIALQARNAEYNPKRFAAVIMRIREP 145
Query: 88 YTTASIWSSGKITCTGATSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFA 147
TTA I+SSGK+ CTGA SE+ S++AAR+YAR +Q+LGF A+F +F++ N++G+C + F
Sbjct: 146 RTTALIFSSGKMVCTGAKSEEDSRLAARKYARIVQKLGFSAKFLDFKIQNMVGSCDVKFP 205
Query: 148 IRILQFSEKH-RAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
IR+ H + + YEPEL PG+ YR+ +P+ L IF +G + +T +I
Sbjct: 206 IRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLTGAKVRQEI 259
>gi|242038657|ref|XP_002466723.1| hypothetical protein SORBIDRAFT_01g012880 [Sorghum bicolor]
gi|241920577|gb|EER93721.1| hypothetical protein SORBIDRAFT_01g012880 [Sorghum bicolor]
Length = 200
Score = 149 bits (376), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 69/152 (45%), Positives = 103/152 (67%), Gaps = 2/152 (1%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGA 104
+ N+V + ++ C L+L+ IAL N EY + V M++R+P TTA I++SGK+ CTGA
Sbjct: 25 LQNIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVCTGA 84
Query: 105 TSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKHRA-AEYE 163
SE QSK+AAR+YAR +Q+LGF A+F +F++ N++G+C + F IR+ + H A + YE
Sbjct: 85 KSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYE 144
Query: 164 PELHPGVTYRITRPKATLKIFSTGGITVTACN 195
PEL PG+ YR+ +PK L IF +G I +T
Sbjct: 145 PELFPGLIYRMKQPKIVLLIFVSGKIVLTGAK 176
>gi|162459971|ref|NP_001105319.1| TATA-box-binding protein 2 [Zea mays]
gi|1729908|sp|P50159.1|TBP2_MAIZE RecName: Full=TATA-box-binding protein 2; AltName: Full=TATA
sequence-binding protein 2; Short=TBP-2; AltName:
Full=TATA-binding factor 2; AltName: Full=TATA-box
factor 2; AltName: Full=Transcription initiation factor
TFIID TBP-2 subunit
gi|293906|gb|AAA65942.1| TATA-binding protein [Zea mays]
gi|195604414|gb|ACG24037.1| TATA-binding protein 2 [Zea mays]
gi|238014342|gb|ACR38206.1| unknown [Zea mays]
gi|413933540|gb|AFW68091.1| TATA-binding protein2 [Zea mays]
Length = 200
Score = 149 bits (376), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 69/152 (45%), Positives = 103/152 (67%), Gaps = 2/152 (1%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGA 104
+ N+V + ++ C L+L+ IAL N EY + V M++R+P TTA I++SGK+ CTGA
Sbjct: 25 LQNIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVCTGA 84
Query: 105 TSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKHRA-AEYE 163
SE QSK+AAR+YAR +Q+LGF A+F +F++ N++G+C + F IR+ + H A + YE
Sbjct: 85 KSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYE 144
Query: 164 PELHPGVTYRITRPKATLKIFSTGGITVTACN 195
PEL PG+ YR+ +PK L IF +G I +T
Sbjct: 145 PELFPGLIYRMKQPKIVLLIFVSGKIVLTGAK 176
>gi|357119735|ref|XP_003561589.1| PREDICTED: TATA-box-binding protein 2-like [Brachypodium
distachyon]
Length = 200
Score = 149 bits (376), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 69/152 (45%), Positives = 103/152 (67%), Gaps = 2/152 (1%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGA 104
+ N+V + ++ C L+L+ IAL N EY + V M++R+P TTA I++SGK+ CTGA
Sbjct: 25 LQNIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVCTGA 84
Query: 105 TSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKHRA-AEYE 163
SE QSK+AAR+YAR +Q+LGF A+F +F++ N++G+C + F IR+ + H A + YE
Sbjct: 85 KSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYE 144
Query: 164 PELHPGVTYRITRPKATLKIFSTGGITVTACN 195
PEL PG+ YR+ +PK L IF +G I +T
Sbjct: 145 PELFPGLIYRMKQPKIVLLIFVSGKIVLTGAK 176
>gi|332021125|gb|EGI61512.1| TATA-box-binding protein [Acromyrmex echinatior]
Length = 305
Score = 149 bits (376), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 70/171 (40%), Positives = 111/171 (64%), Gaps = 2/171 (1%)
Query: 32 PPQPPAHDPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTT 90
P P + DP + + N+V + ++ C L+L++IAL+ N EY + V M++R+P TT
Sbjct: 118 PMTPASADPGILPQLQNIVSTVNLNCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTT 177
Query: 91 ASIWSSGKITCTGATSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRI 150
A I+SSGK+ CTGA SE S++AAR+YAR +Q+LGF A+F +F++ N++G+C + F IR+
Sbjct: 178 ALIFSSGKMVCTGAKSEGDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRL 237
Query: 151 LQFSEKH-RAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
H + + YEPEL PG+ YR+ +P+ L IF +G + +T +I
Sbjct: 238 EGLVLSHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLTGAKIRKEI 288
>gi|115454423|ref|NP_001050812.1| Os03g0657000 [Oryza sativa Japonica Group]
gi|73919858|sp|Q8W0W4.2|TBP2_ORYSJ RecName: Full=TATA-binding protein 2; AltName: Full=TATA
sequence-binding protein 2; Short=TBP-2; AltName:
Full=TATA-binding factor 2; AltName: Full=TATA-box
factor 2; AltName: Full=Transcription initiation factor
TFIID TBP-2 subunit
gi|31415973|gb|AAP50993.1| TATA-binding protein TBP2 [Oryza sativa Japonica Group]
gi|108710181|gb|ABF97976.1| TATA-binding protein 2, putative, expressed [Oryza sativa Japonica
Group]
gi|113549283|dbj|BAF12726.1| Os03g0657000 [Oryza sativa Japonica Group]
gi|215686467|dbj|BAG87728.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 203
Score = 149 bits (376), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 69/152 (45%), Positives = 103/152 (67%), Gaps = 2/152 (1%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGA 104
+ N+V + ++ C L+L+ IAL N EY + V M++R+P TTA I++SGK+ CTGA
Sbjct: 28 LQNIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVCTGA 87
Query: 105 TSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKHRA-AEYE 163
SE QSK+AAR+YAR +Q+LGF A+F +F++ N++G+C + F IR+ + H A + YE
Sbjct: 88 KSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYE 147
Query: 164 PELHPGVTYRITRPKATLKIFSTGGITVTACN 195
PEL PG+ YR+ +PK L IF +G I +T
Sbjct: 148 PELFPGLIYRMKQPKIVLLIFVSGKIVLTGAK 179
>gi|3599497|gb|AAC35362.1| TATA-binding protein [Lytechinus variegatus]
Length = 271
Score = 149 bits (376), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 75/187 (40%), Positives = 116/187 (62%), Gaps = 6/187 (3%)
Query: 20 PTQTVVPIQNHAP--PQPPAHDPEVDII--INNVVCSFSVRCHLNLRQIALNGVNVEYR- 74
P + +P AP P PA I+ + N+V + ++ C L L++IAL+ N EY
Sbjct: 67 PGSSFIPPSPMAPLTPATPASSESSGIVPQLQNIVSTVNLSCKLELKKIALHARNAEYNP 126
Query: 75 RENGMVTMKLRKPYTTASIWSSGKITCTGATSEDQSKIAARRYARCLQRLGFKARFTNFR 134
+ V M++R+P TTA I+SSGK+ CTGA SED S++AAR+YAR +Q+LGF A+F +F+
Sbjct: 127 KRFAAVIMRIREPRTTALIFSSGKMVCTGAKSEDDSRLAARKYARVVQKLGFAAKFLDFK 186
Query: 135 VVNVLGTCSMPFAIRILQFSEKH-RAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTA 193
+ N++G+C + F IR+ H + + YEPEL PG+ YR+ +P+ L IF +G + +T
Sbjct: 187 IQNMVGSCDVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLTG 246
Query: 194 CNDSNKI 200
+I
Sbjct: 247 AKVRQEI 253
>gi|307204782|gb|EFN83340.1| TATA-box-binding protein [Harpegnathos saltator]
Length = 304
Score = 149 bits (376), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 70/171 (40%), Positives = 111/171 (64%), Gaps = 2/171 (1%)
Query: 32 PPQPPAHDPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTT 90
P P + DP + + N+V + ++ C L+L++IAL+ N EY + V M++R+P TT
Sbjct: 117 PMTPASADPGILPQLQNIVSTVNLNCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTT 176
Query: 91 ASIWSSGKITCTGATSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRI 150
A I+SSGK+ CTGA SE S++AAR+YAR +Q+LGF A+F +F++ N++G+C + F IR+
Sbjct: 177 ALIFSSGKMVCTGAKSEADSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRL 236
Query: 151 LQFSEKH-RAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
H + + YEPEL PG+ YR+ +P+ L IF +G + +T +I
Sbjct: 237 EGLVLSHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLTGAKVRKEI 287
>gi|452989027|gb|EME88782.1| hypothetical protein MYCFIDRAFT_209898 [Pseudocercospora fijiensis
CIRAD86]
Length = 260
Score = 149 bits (376), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 68/157 (43%), Positives = 106/157 (67%), Gaps = 2/157 (1%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGA 104
+ N+V + ++ C L+L+ IAL+ N EY + V M++R+P TTA I++SGK+ TGA
Sbjct: 87 LQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGA 146
Query: 105 TSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKHRA-AEYE 163
SED SK+A+R+YAR +Q+LGF A+FT+F++ N++G+C + F IR+ + +H + YE
Sbjct: 147 KSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASRHHMFSSYE 206
Query: 164 PELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
PEL PG+ YR+ +PK L IF +G I +T +I
Sbjct: 207 PELFPGLIYRMMKPKIVLLIFVSGKIVLTGAKVREEI 243
>gi|449452638|ref|XP_004144066.1| PREDICTED: TATA-box-binding protein-like [Cucumis sativus]
gi|449493574|ref|XP_004159356.1| PREDICTED: TATA-box-binding protein-like [Cucumis sativus]
Length = 200
Score = 149 bits (375), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 69/152 (45%), Positives = 103/152 (67%), Gaps = 2/152 (1%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGA 104
+ N+V + ++ C L+L+ IAL N EY + V M++R+P TTA I++SGK+ CTGA
Sbjct: 25 LQNIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVCTGA 84
Query: 105 TSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKHRA-AEYE 163
SE QSK+AAR+YAR +Q+LGF A+F +F++ N++G+C + F IR+ + H A + YE
Sbjct: 85 KSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYE 144
Query: 164 PELHPGVTYRITRPKATLKIFSTGGITVTACN 195
PEL PG+ YR+ +PK L IF +G I +T
Sbjct: 145 PELFPGLIYRMKQPKIVLLIFVSGKIVLTGAK 176
>gi|356571702|ref|XP_003554013.1| PREDICTED: TATA-box-binding protein-like [Glycine max]
Length = 200
Score = 149 bits (375), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 69/152 (45%), Positives = 102/152 (67%), Gaps = 2/152 (1%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGA 104
+ N+V + ++ C L L+ IAL N EY + V M++R+P TTA I++SGK+ CTGA
Sbjct: 25 LQNIVSTVNLDCKLELKSIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVCTGA 84
Query: 105 TSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKHRA-AEYE 163
SE QSK+AAR+YAR +Q+LGF A+F +F++ N++G+C + F IR+ + H A + YE
Sbjct: 85 KSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHSAFSSYE 144
Query: 164 PELHPGVTYRITRPKATLKIFSTGGITVTACN 195
PEL PG+ YR+ +PK L IF +G I +T
Sbjct: 145 PELFPGLIYRMKQPKIVLLIFVSGKIVLTGAK 176
>gi|448112531|ref|XP_004202120.1| Piso0_001599 [Millerozyma farinosa CBS 7064]
gi|448115084|ref|XP_004202744.1| Piso0_001599 [Millerozyma farinosa CBS 7064]
gi|359383612|emb|CCE79528.1| Piso0_001599 [Millerozyma farinosa CBS 7064]
gi|359465109|emb|CCE88814.1| Piso0_001599 [Millerozyma farinosa CBS 7064]
Length = 241
Score = 149 bits (375), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 68/157 (43%), Positives = 105/157 (66%), Gaps = 2/157 (1%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGA 104
+ N+V + ++ C L+L+ IAL+ N EY + V M++R+P TTA I++SGK+ TGA
Sbjct: 68 LQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGA 127
Query: 105 TSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKHRA-AEYE 163
SED SK+A+R+YAR +Q+LGF A+FT+F++ N++G+C + F IR+ + H + YE
Sbjct: 128 KSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDVKFPIRLEGLAFSHGTFSSYE 187
Query: 164 PELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
PEL PG+ YR+ +PK L IF +G I +T +I
Sbjct: 188 PELFPGLIYRMVKPKIVLLIFVSGKIVLTGAKQREEI 224
>gi|126274078|ref|XP_001387406.1| TATA-binding protein [Scheffersomyces stipitis CBS 6054]
gi|126213276|gb|EAZ63383.1| TATA-binding protein [Scheffersomyces stipitis CBS 6054]
Length = 247
Score = 149 bits (375), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 68/157 (43%), Positives = 105/157 (66%), Gaps = 2/157 (1%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGA 104
+ N+V + ++ C L+L+ IAL+ N EY + V M++R+P TTA I++SGK+ TGA
Sbjct: 74 LQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGA 133
Query: 105 TSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKHRA-AEYE 163
SED SK+A+R+YAR +Q+LGF A+FT+F++ N++G+C + F IR+ + H + YE
Sbjct: 134 KSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDVKFPIRLEGLAFSHGTFSSYE 193
Query: 164 PELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
PEL PG+ YR+ +PK L IF +G I +T +I
Sbjct: 194 PELFPGLIYRMVKPKIVLLIFVSGKIVLTGAKQREEI 230
>gi|295670940|ref|XP_002796017.1| TATA-box-binding protein [Paracoccidioides sp. 'lutzii' Pb01]
gi|226284150|gb|EEH39716.1| TATA-box-binding protein [Paracoccidioides sp. 'lutzii' Pb01]
Length = 265
Score = 149 bits (375), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 68/157 (43%), Positives = 106/157 (67%), Gaps = 2/157 (1%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGA 104
+ N+V + ++ C L+L+ IAL+ N EY + V M++R+P TTA I++SGK+ TGA
Sbjct: 92 LQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGA 151
Query: 105 TSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEK-HRAAEYE 163
SED SK+A+R+YAR +Q+LGF A+FT+F++ N++G+C + F IR+ + + H + YE
Sbjct: 152 KSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASRHHNFSSYE 211
Query: 164 PELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
PEL PG+ YR+ +PK L IF +G I +T +I
Sbjct: 212 PELFPGLIYRMMKPKIVLLIFVSGKIVLTGAKVREEI 248
>gi|393238580|gb|EJD46116.1| TBP-domain-containing protein [Auricularia delicata TFB-10046 SS5]
Length = 305
Score = 149 bits (375), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 78/195 (40%), Positives = 120/195 (61%), Gaps = 7/195 (3%)
Query: 11 SSHSEQEPPPTQTVVPIQNHAPPQPPAHDPEVDIII---NNVVCSFSVRCHLNLRQIALN 67
S+ S+ PP +T P Q Q H VD I+ N+V + ++ C L+L+ IAL+
Sbjct: 96 STSSQPAPPAEKTDAPAQPLTLEQ--QHITAVDGIVPTLQNIVATVNLDCRLDLKTIALH 153
Query: 68 GVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGATSEDQSKIAARRYARCLQRLGF 126
N EY + V M++R+P TTA I++SGK+ TGA SED S++A+R+YAR +Q+LGF
Sbjct: 154 ARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGAKSEDDSRLASRKYARIVQKLGF 213
Query: 127 KARFTNFRVVNVLGTCSMPFAIRILQFSEKH-RAAEYEPELHPGVTYRITRPKATLKIFS 185
A+F+ F++ N++G+C + F IR+ + H + + YEPEL PG+ YR+ +PK L IF
Sbjct: 214 DAKFSEFKIQNIVGSCDVKFPIRLEGLAYSHGQFSSYEPELFPGLIYRMLKPKVVLLIFV 273
Query: 186 TGGITVTACNDSNKI 200
+G I +T +I
Sbjct: 274 SGKIVLTGAKVREEI 288
>gi|242084298|ref|XP_002442574.1| hypothetical protein SORBIDRAFT_08g022273 [Sorghum bicolor]
gi|241943267|gb|EES16412.1| hypothetical protein SORBIDRAFT_08g022273 [Sorghum bicolor]
Length = 200
Score = 149 bits (375), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 69/152 (45%), Positives = 103/152 (67%), Gaps = 2/152 (1%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGA 104
+ N+V + ++ C L+L+ IAL N EY + V M++R+P TTA I++SGK+ CTGA
Sbjct: 25 LQNIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVCTGA 84
Query: 105 TSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKHRA-AEYE 163
SE QSK+AAR+YAR +Q+LGF A+F +F++ N++G+C + F IR+ + H A + YE
Sbjct: 85 KSEHQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYE 144
Query: 164 PELHPGVTYRITRPKATLKIFSTGGITVTACN 195
PEL PG+ YR+ +PK L IF +G I +T
Sbjct: 145 PELFPGLIYRMKQPKIVLLIFVSGKIVLTGAK 176
>gi|322801294|gb|EFZ21981.1| hypothetical protein SINV_10030 [Solenopsis invicta]
Length = 306
Score = 149 bits (375), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 70/171 (40%), Positives = 111/171 (64%), Gaps = 2/171 (1%)
Query: 32 PPQPPAHDPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTT 90
P P + DP + + N+V + ++ C L+L++IAL+ N EY + V M++R+P TT
Sbjct: 119 PMTPASADPGILPQLQNIVSTVNLSCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTT 178
Query: 91 ASIWSSGKITCTGATSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRI 150
A I+SSGK+ CTGA SE S++AAR+YAR +Q+LGF A+F +F++ N++G+C + F IR+
Sbjct: 179 ALIFSSGKMVCTGAKSEGDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRL 238
Query: 151 LQFSEKH-RAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
H + + YEPEL PG+ YR+ +P+ L IF +G + +T +I
Sbjct: 239 EGLVLSHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLTGAKVRTEI 289
>gi|342879468|gb|EGU80715.1| hypothetical protein FOXB_08755 [Fusarium oxysporum Fo5176]
Length = 254
Score = 149 bits (375), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 68/157 (43%), Positives = 106/157 (67%), Gaps = 2/157 (1%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGA 104
+ N+V + ++ C L+L+ IAL+ N EY + V M++R+P TTA I++SGK+ TGA
Sbjct: 81 LQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGA 140
Query: 105 TSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEK-HRAAEYE 163
SED SK+A+R+YAR +Q+LGF A+FT+F++ N++G+C + F IR+ + + H + YE
Sbjct: 141 KSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASRHHNFSSYE 200
Query: 164 PELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
PEL PG+ YR+ +PK L IF +G I +T +I
Sbjct: 201 PELFPGLIYRMIKPKIVLLIFVSGKIVLTGAKVREEI 237
>gi|414872052|tpg|DAA50609.1| TPA: TATA-box-binding protein 1(TATA-binding factor 1)(TATA
sequence-binding protein 1) [Zea mays]
Length = 215
Score = 149 bits (375), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 71/171 (41%), Positives = 109/171 (63%), Gaps = 2/171 (1%)
Query: 27 IQNHAPPQPPAHDPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLR 85
+++ P H + + N+V + ++ C L+L+ IAL N EY + V M++R
Sbjct: 6 LEDSQPVDLSKHPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIR 65
Query: 86 KPYTTASIWSSGKITCTGATSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMP 145
+P TTA I++SGK+ CTGA SE QSK+AAR+YAR +Q+LGF A+F +F++ N++G+C +
Sbjct: 66 EPKTTALIFASGKMVCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVK 125
Query: 146 FAIRILQFSEKHRA-AEYEPELHPGVTYRITRPKATLKIFSTGGITVTACN 195
F IR+ + H A + YEPEL PG+ YR+ +PK L IF +G I +T
Sbjct: 126 FPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLTGAK 176
>gi|310798673|gb|EFQ33566.1| transcription factor TFIID [Glomerella graminicola M1.001]
Length = 256
Score = 149 bits (375), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 68/157 (43%), Positives = 106/157 (67%), Gaps = 2/157 (1%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGA 104
+ N+V + ++ C L+L+ IAL+ N EY + V M++R+P TTA I++SGK+ TGA
Sbjct: 83 LQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGA 142
Query: 105 TSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEK-HRAAEYE 163
SED SK+A+R+YAR +Q+LGF A+FT+F++ N++G+C + F IR+ + + H + YE
Sbjct: 143 KSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASRHHNFSSYE 202
Query: 164 PELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
PEL PG+ YR+ +PK L IF +G I +T +I
Sbjct: 203 PELFPGLIYRMIKPKIVLLIFVSGKIVLTGAKVREEI 239
>gi|225681638|gb|EEH19922.1| TATA-box-binding protein [Paracoccidioides brasiliensis Pb03]
gi|226288778|gb|EEH44290.1| TATA-box-binding protein [Paracoccidioides brasiliensis Pb18]
Length = 265
Score = 149 bits (375), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 68/157 (43%), Positives = 106/157 (67%), Gaps = 2/157 (1%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGA 104
+ N+V + ++ C L+L+ IAL+ N EY + V M++R+P TTA I++SGK+ TGA
Sbjct: 92 LQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGA 151
Query: 105 TSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEK-HRAAEYE 163
SED SK+A+R+YAR +Q+LGF A+FT+F++ N++G+C + F IR+ + + H + YE
Sbjct: 152 KSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASRHHNFSSYE 211
Query: 164 PELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
PEL PG+ YR+ +PK L IF +G I +T +I
Sbjct: 212 PELFPGLIYRMMKPKIVLLIFVSGKIVLTGAKVREEI 248
>gi|413933539|gb|AFW68090.1| TATA-binding protein2, partial [Zea mays]
Length = 205
Score = 149 bits (375), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 69/152 (45%), Positives = 103/152 (67%), Gaps = 2/152 (1%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGA 104
+ N+V + ++ C L+L+ IAL N EY + V M++R+P TTA I++SGK+ CTGA
Sbjct: 25 LQNIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVCTGA 84
Query: 105 TSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKHRA-AEYE 163
SE QSK+AAR+YAR +Q+LGF A+F +F++ N++G+C + F IR+ + H A + YE
Sbjct: 85 KSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYE 144
Query: 164 PELHPGVTYRITRPKATLKIFSTGGITVTACN 195
PEL PG+ YR+ +PK L IF +G I +T
Sbjct: 145 PELFPGLIYRMKQPKIVLLIFVSGKIVLTGAK 176
>gi|4102725|gb|AAD10238.1| TATA-box binding protein [Phaseolus vulgaris]
Length = 200
Score = 149 bits (375), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 69/152 (45%), Positives = 103/152 (67%), Gaps = 2/152 (1%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGA 104
+ N+V + ++ C L+L+ IAL N EY + V M++R+P TTA I++SGK+ CTGA
Sbjct: 25 LQNIVSTVNLDCKLDLKTIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVCTGA 84
Query: 105 TSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKHRA-AEYE 163
SE QSK+AAR+YAR +Q+LGF A+F +F++ N++G+C + F IR+ + H A + YE
Sbjct: 85 KSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYE 144
Query: 164 PELHPGVTYRITRPKATLKIFSTGGITVTACN 195
PEL PG+ YR+ +PK L IF +G I +T
Sbjct: 145 PELFPGLIYRMKQPKIVLLIFVSGKIVLTGAK 176
>gi|255936921|ref|XP_002559487.1| Pc13g10670 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211584107|emb|CAP92136.1| Pc13g10670 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 265
Score = 149 bits (375), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 67/151 (44%), Positives = 104/151 (68%), Gaps = 2/151 (1%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGA 104
+ N+V + ++ C L+L+ IAL+ N EY + V M++R+P TTA I++SGK+ TGA
Sbjct: 92 LQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGA 151
Query: 105 TSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEK-HRAAEYE 163
SED SK+A+R+YAR +Q+LGF A+FT+F++ N++G+C + F IR+ + + H + YE
Sbjct: 152 KSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASRHHNFSSYE 211
Query: 164 PELHPGVTYRITRPKATLKIFSTGGITVTAC 194
PEL PG+ YR+ +PK L IF +G I +T
Sbjct: 212 PELFPGLIYRMMKPKIVLLIFVSGKIVLTGA 242
>gi|294659650|ref|XP_002770623.1| DEHA2G11836p [Debaryomyces hansenii CBS767]
gi|199434124|emb|CAR65957.1| DEHA2G11836p [Debaryomyces hansenii CBS767]
Length = 243
Score = 149 bits (375), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 68/157 (43%), Positives = 105/157 (66%), Gaps = 2/157 (1%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGA 104
+ N+V + ++ C L+L+ IAL+ N EY + V M++R+P TTA I++SGK+ TGA
Sbjct: 70 LQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGA 129
Query: 105 TSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKHRA-AEYE 163
SED SK+A+R+YAR +Q+LGF A+FT+F++ N++G+C + F IR+ + H + YE
Sbjct: 130 KSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDVKFPIRLEGLAFSHGTFSSYE 189
Query: 164 PELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
PEL PG+ YR+ +PK L IF +G I +T +I
Sbjct: 190 PELFPGLIYRMVKPKIVLLIFVSGKIVLTGAKQREEI 226
>gi|414872051|tpg|DAA50608.1| TPA: hypothetical protein ZEAMMB73_869091, partial [Zea mays]
Length = 195
Score = 149 bits (375), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 72/173 (41%), Positives = 110/173 (63%), Gaps = 2/173 (1%)
Query: 27 IQNHAPPQPPAHDPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLR 85
+++ P H + + N+V + ++ C L+L+ IAL N EY + V M++R
Sbjct: 6 LEDSQPVDLSKHPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIR 65
Query: 86 KPYTTASIWSSGKITCTGATSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMP 145
+P TTA I++SGK+ CTGA SE QSK+AAR+YAR +Q+LGF A+F +F++ N++G+C +
Sbjct: 66 EPKTTALIFASGKMVCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVK 125
Query: 146 FAIRILQFSEKHRA-AEYEPELHPGVTYRITRPKATLKIFSTGGITVTACNDS 197
F IR+ + H A + YEPEL PG+ YR+ +PK L IF +G I +T S
Sbjct: 126 FPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLTGAKVS 178
>gi|380491274|emb|CCF35436.1| TATA-box-binding protein [Colletotrichum higginsianum]
Length = 304
Score = 149 bits (375), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 68/157 (43%), Positives = 106/157 (67%), Gaps = 2/157 (1%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGA 104
+ N+V + ++ C L+L+ IAL+ N EY + V M++R+P TTA I++SGK+ TGA
Sbjct: 85 LQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGA 144
Query: 105 TSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKHR-AAEYE 163
SED SK+A+R+YAR +Q+LGF A+FT+F++ N++G+C + F IR+ + +H + YE
Sbjct: 145 KSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASRHHNFSSYE 204
Query: 164 PELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
PEL PG+ YR+ +PK L IF +G I +T +I
Sbjct: 205 PELFPGLIYRMIKPKIVLLIFVSGKIVLTGAKVREEI 241
>gi|225556591|gb|EEH04879.1| transcription initiation factor TFIID-2 [Ajellomyces capsulatus
G186AR]
gi|240273705|gb|EER37225.1| TATA-binding protein [Ajellomyces capsulatus H143]
gi|325087599|gb|EGC40909.1| transcription initiation factor TFIID-2 [Ajellomyces capsulatus
H88]
Length = 262
Score = 149 bits (375), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 68/157 (43%), Positives = 106/157 (67%), Gaps = 2/157 (1%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGA 104
+ N+V + ++ C L+L+ IAL+ N EY + V M++R+P TTA I++SGK+ TGA
Sbjct: 89 LQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGA 148
Query: 105 TSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEK-HRAAEYE 163
SED SK+A+R+YAR +Q+LGF A+FT+F++ N++G+C + F IR+ + + H + YE
Sbjct: 149 KSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASRHHNFSSYE 208
Query: 164 PELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
PEL PG+ YR+ +PK L IF +G I +T +I
Sbjct: 209 PELFPGLIYRMMKPKIVLLIFVSGKIVLTGAKVREEI 245
>gi|4102723|gb|AAD10237.1| TATA-box binding protein [Phaseolus vulgaris]
Length = 200
Score = 149 bits (375), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 69/152 (45%), Positives = 103/152 (67%), Gaps = 2/152 (1%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGA 104
+ N+V + ++ C L+L+ IAL N EY + V M++R+P TTA I++SGK+ CTGA
Sbjct: 25 LQNIVSTVNLDCKLDLKTIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVCTGA 84
Query: 105 TSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKHRA-AEYE 163
SE QSK+AAR+YAR +Q+LGF A+F +F++ N++G+C + F IR+ + H A + YE
Sbjct: 85 KSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYE 144
Query: 164 PELHPGVTYRITRPKATLKIFSTGGITVTACN 195
PEL PG+ YR+ +PK L IF +G I +T
Sbjct: 145 PELFPGLIYRMKQPKIVLLIFVSGKIVLTGAK 176
>gi|345560531|gb|EGX43656.1| hypothetical protein AOL_s00215g392 [Arthrobotrys oligospora ATCC
24927]
Length = 257
Score = 149 bits (375), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 67/151 (44%), Positives = 104/151 (68%), Gaps = 2/151 (1%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGA 104
+ N+V + ++ C L+L+ IAL+ N EY + V M++R+P TTA I++SGK+ TGA
Sbjct: 84 LQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGA 143
Query: 105 TSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEK-HRAAEYE 163
SED SK+A+R+YAR +Q+LGF A+FT+F++ N++G+C + F IR+ + + H + YE
Sbjct: 144 KSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASRHHHFSSYE 203
Query: 164 PELHPGVTYRITRPKATLKIFSTGGITVTAC 194
PEL PG+ YR+ +PK L IF +G I +T
Sbjct: 204 PELFPGLIYRMIKPKIVLLIFVSGKIVLTGA 234
>gi|261194208|ref|XP_002623509.1| transcription initiation factor TFIID-2 [Ajellomyces dermatitidis
SLH14081]
gi|239588523|gb|EEQ71166.1| transcription initiation factor TFIID-2 [Ajellomyces dermatitidis
SLH14081]
gi|239606906|gb|EEQ83893.1| transcription initiation factor TFIID-2 [Ajellomyces dermatitidis
ER-3]
gi|327351372|gb|EGE80229.1| hypothetical protein BDDG_03170 [Ajellomyces dermatitidis ATCC
18188]
Length = 262
Score = 149 bits (375), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 68/157 (43%), Positives = 106/157 (67%), Gaps = 2/157 (1%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGA 104
+ N+V + ++ C L+L+ IAL+ N EY + V M++R+P TTA I++SGK+ TGA
Sbjct: 89 LQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGA 148
Query: 105 TSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEK-HRAAEYE 163
SED SK+A+R+YAR +Q+LGF A+FT+F++ N++G+C + F IR+ + + H + YE
Sbjct: 149 KSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASRHHNFSSYE 208
Query: 164 PELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
PEL PG+ YR+ +PK L IF +G I +T +I
Sbjct: 209 PELFPGLIYRMMKPKIVLLIFVSGKIVLTGAKVREEI 245
>gi|340517005|gb|EGR47251.1| TATA binding protein [Trichoderma reesei QM6a]
Length = 253
Score = 149 bits (375), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 68/157 (43%), Positives = 106/157 (67%), Gaps = 2/157 (1%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGA 104
+ N+V + ++ C L+L+ IAL+ N EY + V M++R+P TTA I++SGK+ TGA
Sbjct: 80 LQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGA 139
Query: 105 TSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEK-HRAAEYE 163
SED SK+A+R+YAR +Q+LGF A+FT+F++ N++G+C + F IR+ + + H + YE
Sbjct: 140 KSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASRHHNFSSYE 199
Query: 164 PELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
PEL PG+ YR+ +PK L IF +G I +T +I
Sbjct: 200 PELFPGLIYRMIKPKIVLLIFVSGKIVLTGAKVREEI 236
>gi|222625492|gb|EEE59624.1| hypothetical protein OsJ_11965 [Oryza sativa Japonica Group]
Length = 207
Score = 149 bits (375), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 69/152 (45%), Positives = 103/152 (67%), Gaps = 2/152 (1%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGA 104
+ N+V + ++ C L+L+ IAL N EY + V M++R+P TTA I++SGK+ CTGA
Sbjct: 28 LQNIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVCTGA 87
Query: 105 TSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKHRA-AEYE 163
SE QSK+AAR+YAR +Q+LGF A+F +F++ N++G+C + F IR+ + H A + YE
Sbjct: 88 KSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYE 147
Query: 164 PELHPGVTYRITRPKATLKIFSTGGITVTACN 195
PEL PG+ YR+ +PK L IF +G I +T
Sbjct: 148 PELFPGLIYRMKQPKIVLLIFVSGKIVLTGAK 179
>gi|974216|emb|CAA62224.1| TATA-box binding protein [Zea mays]
Length = 215
Score = 149 bits (375), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 71/171 (41%), Positives = 109/171 (63%), Gaps = 2/171 (1%)
Query: 27 IQNHAPPQPPAHDPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLR 85
+++ P H + + N+V + ++ C L+L+ IAL N EY + V M++R
Sbjct: 6 LEDSQPVDLSKHPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIR 65
Query: 86 KPYTTASIWSSGKITCTGATSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMP 145
+P TTA I++SGK+ CTGA SE QSK+AAR+YAR +Q+LGF A+F +F++ N++G+C +
Sbjct: 66 EPKTTALIFASGKMVCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVK 125
Query: 146 FAIRILQFSEKHRA-AEYEPELHPGVTYRITRPKATLKIFSTGGITVTACN 195
F IR+ + H A + YEPEL PG+ YR+ +PK L IF +G I +T
Sbjct: 126 FPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLTGAK 176
>gi|429859533|gb|ELA34313.1| RNA polymerase i and iii transcription factor complex component
[Colletotrichum gloeosporioides Nara gc5]
Length = 256
Score = 149 bits (375), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 68/157 (43%), Positives = 106/157 (67%), Gaps = 2/157 (1%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGA 104
+ N+V + ++ C L+L+ IAL+ N EY + V M++R+P TTA I++SGK+ TGA
Sbjct: 83 LQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGA 142
Query: 105 TSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEK-HRAAEYE 163
SED SK+A+R+YAR +Q+LGF A+FT+F++ N++G+C + F IR+ + + H + YE
Sbjct: 143 KSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASRHHNFSSYE 202
Query: 164 PELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
PEL PG+ YR+ +PK L IF +G I +T +I
Sbjct: 203 PELFPGLIYRMIKPKIVLLIFVSGKIVLTGAKVREEI 239
>gi|407927098|gb|EKG20002.1| TATA-box binding protein [Macrophomina phaseolina MS6]
Length = 250
Score = 149 bits (375), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 67/151 (44%), Positives = 104/151 (68%), Gaps = 2/151 (1%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGA 104
+ N+V + ++ C L+L+ IAL+ N EY + V M++R+P TTA I++SGK+ TGA
Sbjct: 77 LQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGA 136
Query: 105 TSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEK-HRAAEYE 163
SED SK+A+R+YAR +Q+LGF A+FT+F++ N++G+C + F IR+ + + H + YE
Sbjct: 137 KSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASRHHNFSSYE 196
Query: 164 PELHPGVTYRITRPKATLKIFSTGGITVTAC 194
PEL PG+ YR+ +PK L IF +G I +T
Sbjct: 197 PELFPGLIYRMMKPKIVLLIFVSGKIVLTGA 227
>gi|149248310|ref|XP_001528542.1| TATA-box binding protein [Lodderomyces elongisporus NRRL YB-4239]
gi|146448496|gb|EDK42884.1| TATA-box binding protein [Lodderomyces elongisporus NRRL YB-4239]
Length = 248
Score = 149 bits (375), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 68/157 (43%), Positives = 104/157 (66%), Gaps = 2/157 (1%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGA 104
+ N+V + ++ C L+L+ IAL+ N EY + V M++R P TTA I++SGK+ TGA
Sbjct: 75 LQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIRDPKTTALIFASGKMVVTGA 134
Query: 105 TSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKHRA-AEYE 163
SED SK+A+R+YAR +Q+LGF A+FT+F++ N++G+C + F IR+ + H + YE
Sbjct: 135 KSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDVKFPIRLEGLAFSHGTFSSYE 194
Query: 164 PELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
PEL PG+ YR+ +PK L IF +G I +T +I
Sbjct: 195 PELFPGLIYRMVKPKIVLLIFVSGKIVLTGAKQREEI 231
>gi|322711070|gb|EFZ02644.1| TATA binding protein [Metarhizium anisopliae ARSEF 23]
Length = 253
Score = 149 bits (375), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 67/151 (44%), Positives = 104/151 (68%), Gaps = 2/151 (1%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGA 104
+ N+V + ++ C L+L+ IAL+ N EY + V M++R+P TTA I++SGK+ TGA
Sbjct: 80 LQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGA 139
Query: 105 TSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEK-HRAAEYE 163
SED SK+A+R+YAR +Q+LGF A+FT+F++ N++G+C + F IR+ + + H + YE
Sbjct: 140 KSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASRHHNFSSYE 199
Query: 164 PELHPGVTYRITRPKATLKIFSTGGITVTAC 194
PEL PG+ YR+ +PK L IF +G I +T
Sbjct: 200 PELFPGLIYRMIKPKIVLLIFVSGKIVLTGA 230
>gi|260830471|ref|XP_002610184.1| hypothetical protein BRAFLDRAFT_121529 [Branchiostoma floridae]
gi|229295548|gb|EEN66194.1| hypothetical protein BRAFLDRAFT_121529 [Branchiostoma floridae]
Length = 320
Score = 149 bits (375), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 70/165 (42%), Positives = 108/165 (65%), Gaps = 2/165 (1%)
Query: 33 PQPPAHDPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTA 91
P PA + + N+V + ++ C L+L++IAL+ N EY + V M++R P TTA
Sbjct: 144 PATPAEGSGIVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIRDPRTTA 203
Query: 92 SIWSSGKITCTGATSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRIL 151
I+SSGK+ CTGA SEDQS++AAR+YAR +Q+LGF A+F +F++ N++G+C + F IR+
Sbjct: 204 LIFSSGKMVCTGAKSEDQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLE 263
Query: 152 QFSEKH-RAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTACN 195
H + + YEPEL PG+ YR+ +P+ L IF +G + +T
Sbjct: 264 GLVLTHAQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLTGAQ 308
>gi|170674514|gb|ACB30147.1| TATA binding protein [Epichloe festucae]
Length = 256
Score = 148 bits (374), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 68/157 (43%), Positives = 106/157 (67%), Gaps = 2/157 (1%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGA 104
+ N+V + ++ C L+L+ IAL+ N EY + V M++R+P TTA I++SGK+ TGA
Sbjct: 83 LQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGA 142
Query: 105 TSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEK-HRAAEYE 163
SED SK+A+R+YAR +Q+LGF A+FT+F++ N++G+C + F IR+ + + H + YE
Sbjct: 143 KSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASRHHNFSSYE 202
Query: 164 PELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
PEL PG+ YR+ +PK L IF +G I +T +I
Sbjct: 203 PELFPGLIYRMIKPKIVLLIFVSGKIVLTGAKVREEI 239
>gi|351727953|ref|NP_001238202.1| TATA-box-binding protein [Glycine max]
gi|3122946|sp|Q42808.1|TBP_SOYBN RecName: Full=TATA-box-binding protein; AltName: Full=TATA
sequence-binding protein; Short=TBP; AltName:
Full=TATA-binding factor; AltName: Full=TATA-box factor;
AltName: Full=Transcription initiation factor TFIID TBP
subunit
gi|1220522|gb|AAA91948.1| TATA-box binding protein [Glycine max]
Length = 200
Score = 148 bits (374), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 69/152 (45%), Positives = 102/152 (67%), Gaps = 2/152 (1%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGA 104
+ N+V + ++ C L+L+ IAL N EY + V M++R P TTA I++SGK+ CTGA
Sbjct: 25 LQNIVSTVNLDCKLDLKTIALQARNAEYNPKRFAAVIMRIRDPKTTALIFASGKMVCTGA 84
Query: 105 TSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKHRA-AEYE 163
SE QSK+AAR+YAR +Q+LGF A+F +F++ N++G+C + F IR+ + H A + YE
Sbjct: 85 KSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYE 144
Query: 164 PELHPGVTYRITRPKATLKIFSTGGITVTACN 195
PEL PG+ YR+ +PK L IF +G I +T
Sbjct: 145 PELFPGLIYRMKQPKIVLLIFVSGKIVLTGAK 176
>gi|346974478|gb|EGY17930.1| TATA-box-binding protein [Verticillium dahliae VdLs.17]
Length = 249
Score = 148 bits (374), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 68/157 (43%), Positives = 106/157 (67%), Gaps = 2/157 (1%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGA 104
+ N+V + ++ C L+L+ IAL+ N EY + V M++R+P TTA I++SGK+ TGA
Sbjct: 76 LQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGA 135
Query: 105 TSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEK-HRAAEYE 163
SED SK+A+R+YAR +Q+LGF A+FT+F++ N++G+C + F IR+ + + H + YE
Sbjct: 136 KSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASRHHNFSSYE 195
Query: 164 PELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
PEL PG+ YR+ +PK L IF +G I +T +I
Sbjct: 196 PELFPGLIYRMIKPKIVLLIFVSGKIVLTGAKVREEI 232
>gi|260941770|ref|XP_002615051.1| TATA-box binding protein [Clavispora lusitaniae ATCC 42720]
gi|238851474|gb|EEQ40938.1| TATA-box binding protein [Clavispora lusitaniae ATCC 42720]
Length = 237
Score = 148 bits (374), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 68/157 (43%), Positives = 105/157 (66%), Gaps = 2/157 (1%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGA 104
+ N+V + ++ C L+L+ IAL+ N EY + V M++R+P TTA I++SGK+ TGA
Sbjct: 64 LQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGA 123
Query: 105 TSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKHRA-AEYE 163
SED SK+A+R+YAR +Q+LGF A+FT+F++ N++G+C + F IR+ + H + YE
Sbjct: 124 KSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDVKFPIRLEGLAFSHGTFSSYE 183
Query: 164 PELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
PEL PG+ YR+ +PK L IF +G I +T +I
Sbjct: 184 PELFPGLIYRMVKPKIVLLIFVSGKIVLTGAKQREEI 220
>gi|222617361|gb|EEE53493.1| hypothetical protein OsJ_36653 [Oryza sativa Japonica Group]
Length = 225
Score = 148 bits (374), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 69/150 (46%), Positives = 103/150 (68%), Gaps = 2/150 (1%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGA 104
+ N+V + ++ C L+L+ IAL N EY + V M++R+P TTA I++SGK+ CTGA
Sbjct: 33 LQNIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVCTGA 92
Query: 105 TSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKHRA-AEYE 163
SE QSK+AAR+YAR +Q+LGF A+F +F++ N++G+C + F IR+ + H A + YE
Sbjct: 93 KSEQQSKLAARKYARIIQKLGFAAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYE 152
Query: 164 PELHPGVTYRITRPKATLKIFSTGGITVTA 193
PEL PG+ YR+ +PK L IF +G I +T
Sbjct: 153 PELFPGLIYRMKQPKIVLLIFVSGKIVLTG 182
>gi|358386238|gb|EHK23834.1| hypothetical protein TRIVIDRAFT_89322 [Trichoderma virens Gv29-8]
Length = 253
Score = 148 bits (374), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 67/151 (44%), Positives = 104/151 (68%), Gaps = 2/151 (1%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGA 104
+ N+V + ++ C L+L+ IAL+ N EY + V M++R+P TTA I++SGK+ TGA
Sbjct: 80 LQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGA 139
Query: 105 TSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEK-HRAAEYE 163
SED SK+A+R+YAR +Q+LGF A+FT+F++ N++G+C + F IR+ + + H + YE
Sbjct: 140 KSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASRHHNFSSYE 199
Query: 164 PELHPGVTYRITRPKATLKIFSTGGITVTAC 194
PEL PG+ YR+ +PK L IF +G I +T
Sbjct: 200 PELFPGLIYRMIKPKIVLLIFVSGKIVLTGA 230
>gi|344305038|gb|EGW35270.1| hypothetical protein SPAPADRAFT_58486 [Spathaspora passalidarum
NRRL Y-27907]
Length = 246
Score = 148 bits (374), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 68/157 (43%), Positives = 104/157 (66%), Gaps = 2/157 (1%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGA 104
+ N+V + ++ C L+L+ IAL+ N EY + V M++R P TTA I++SGK+ TGA
Sbjct: 73 LQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIRDPKTTALIFASGKMVVTGA 132
Query: 105 TSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKHRA-AEYE 163
SED SK+A+R+YAR +Q+LGF A+FT+F++ N++G+C + F IR+ + H + YE
Sbjct: 133 KSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDVKFPIRLEGLAFSHGTFSSYE 192
Query: 164 PELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
PEL PG+ YR+ +PK L IF +G I +T +I
Sbjct: 193 PELFPGLIYRMVKPKIVLLIFVSGKIVLTGAKQREEI 229
>gi|358335036|dbj|GAA53489.1| transcription initiation factor TFIID TATA-box-binding protein
[Clonorchis sinensis]
Length = 436
Score = 148 bits (374), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 71/157 (45%), Positives = 108/157 (68%), Gaps = 2/157 (1%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGA 104
+ N+VC+ + C LNL+QIAL+ N EY + V M++R+P TTA I+SSGK+ CTGA
Sbjct: 247 LQNIVCTVYLGCKLNLKQIALSARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 306
Query: 105 TSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFS-EKHRAAEYE 163
SE+++++AAR+YAR +Q+LGF+A F F++ N++G+C + F IR+ + + A YE
Sbjct: 307 KSEERARLAARKYARIIQKLGFEAHFKEFKIQNMVGSCDVRFHIRLEGLVLAQGQFATYE 366
Query: 164 PELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
PEL PG+ YR+T+PK L IF +G I +T ++I
Sbjct: 367 PELFPGLIYRMTKPKIVLLIFVSGKIVLTGAKVRDEI 403
>gi|425767263|gb|EKV05837.1| RNA polymerase I and III transcription factor complex component
Tbp, putative [Penicillium digitatum PHI26]
gi|425780061|gb|EKV18083.1| RNA polymerase I and III transcription factor complex component
Tbp, putative [Penicillium digitatum Pd1]
Length = 263
Score = 148 bits (374), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 67/151 (44%), Positives = 104/151 (68%), Gaps = 2/151 (1%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGA 104
+ N+V + ++ C L+L+ IAL+ N EY + V M++R+P TTA I++SGK+ TGA
Sbjct: 90 LQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGA 149
Query: 105 TSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEK-HRAAEYE 163
SED SK+A+R+YAR +Q+LGF A+FT+F++ N++G+C + F IR+ + + H + YE
Sbjct: 150 KSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASRHHNFSSYE 209
Query: 164 PELHPGVTYRITRPKATLKIFSTGGITVTAC 194
PEL PG+ YR+ +PK L IF +G I +T
Sbjct: 210 PELFPGLIYRMMKPKIVLLIFVSGKIVLTGA 240
>gi|406862826|gb|EKD15875.1| transcription initiation factor TFIID-2 [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 264
Score = 148 bits (374), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 68/157 (43%), Positives = 106/157 (67%), Gaps = 2/157 (1%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGA 104
+ N+V + ++ C L+L+ IAL+ N EY + V M++R+P TTA I++SGK+ TGA
Sbjct: 91 LQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGA 150
Query: 105 TSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKHR-AAEYE 163
SED SK+A+R+YAR +Q+LGF A+FT+F++ N++G+C + F IR+ + +H + YE
Sbjct: 151 KSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASRHHNFSSYE 210
Query: 164 PELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
PEL PG+ YR+ +PK L IF +G I +T +I
Sbjct: 211 PELFPGLIYRMIKPKIVLLIFVSGKIVLTGAKVREEI 247
>gi|3122941|sp|P93348.1|TBP_TOBAC RecName: Full=TATA-box-binding protein; AltName: Full=TATA
sequence-binding protein; Short=TBP; AltName:
Full=TATA-binding factor; AltName: Full=TATA-box factor;
AltName: Full=Transcription initiation factor TFIID TBP
subunit
gi|1498162|dbj|BAA13156.1| TATA binding protein (TBP) [Nicotiana tabacum]
Length = 200
Score = 148 bits (374), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 71/173 (41%), Positives = 109/173 (63%), Gaps = 2/173 (1%)
Query: 25 VPIQNHAPPQPPAHDPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMK 83
V ++ + P H + + N+V + ++ C L+L+ IAL N EY + V M+
Sbjct: 4 VGLEGNQPVDLSKHPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMR 63
Query: 84 LRKPYTTASIWSSGKITCTGATSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCS 143
+R+P TTA I++SGK+ CTGA SE SK+AAR+YAR +Q+LGF A+F +F++ N++G+C
Sbjct: 64 IREPKTTALIFASGKMVCTGAKSEQSSKLAARKYARIIQKLGFDAKFKDFKIQNIVGSCD 123
Query: 144 MPFAIRILQFSEKHRA-AEYEPELHPGVTYRITRPKATLKIFSTGGITVTACN 195
+ F IR+ + H A + YEPEL PG+ YR+ +PK L IF +G I +T
Sbjct: 124 VKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLTGAK 176
>gi|395843435|ref|XP_003794490.1| PREDICTED: TATA box-binding protein-like protein 2 [Otolemur
garnettii]
Length = 364
Score = 148 bits (374), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 68/157 (43%), Positives = 106/157 (67%), Gaps = 2/157 (1%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYRREN-GMVTMKLRKPYTTASIWSSGKITCTGA 104
+ N+VC+ ++ C L+LR+IAL N EY + V M++R+P TTA I+SSGKI CTGA
Sbjct: 191 LQNIVCTINLACKLDLREIALRAKNTEYNPQRFSAVIMRIREPRTTALIFSSGKIVCTGA 250
Query: 105 TSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKHRA-AEYE 163
SE+QS++AAR++AR +Q+LGF ARF +F++ N++G+C + F IR+ H+ YE
Sbjct: 251 KSEEQSRLAARKFARVVQKLGFPARFLDFKIHNMVGSCDVGFPIRLEGLVLAHQQFCSYE 310
Query: 164 PELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
PEL PG+ YR+ +P+ + IF +G + + ++I
Sbjct: 311 PELFPGLIYRMVKPRVVVLIFVSGKVVLAGAKKRSEI 347
>gi|358394886|gb|EHK44279.1| hypothetical protein TRIATDRAFT_300545 [Trichoderma atroviride IMI
206040]
Length = 253
Score = 148 bits (374), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 67/151 (44%), Positives = 104/151 (68%), Gaps = 2/151 (1%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGA 104
+ N+V + ++ C L+L+ IAL+ N EY + V M++R+P TTA I++SGK+ TGA
Sbjct: 80 LQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGA 139
Query: 105 TSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEK-HRAAEYE 163
SED SK+A+R+YAR +Q+LGF A+FT+F++ N++G+C + F IR+ + + H + YE
Sbjct: 140 KSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASRHHNFSSYE 199
Query: 164 PELHPGVTYRITRPKATLKIFSTGGITVTAC 194
PEL PG+ YR+ +PK L IF +G I +T
Sbjct: 200 PELFPGLIYRMIKPKIVLLIFVSGKIVLTGA 230
>gi|346323634|gb|EGX93232.1| TATA-box binding protein [Cordyceps militaris CM01]
Length = 264
Score = 148 bits (374), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 68/157 (43%), Positives = 106/157 (67%), Gaps = 2/157 (1%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGA 104
+ N+V + ++ C L+L+ IAL+ N EY + V M++R+P TTA I++SGK+ TGA
Sbjct: 80 LQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGA 139
Query: 105 TSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEK-HRAAEYE 163
SED SK+A+R+YAR +Q+LGF A+FT+F++ N++G+C + F IR+ + + H + YE
Sbjct: 140 KSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASRHHNFSSYE 199
Query: 164 PELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
PEL PG+ YR+ +PK L IF +G I +T +I
Sbjct: 200 PELFPGLIYRMIKPKIVLLIFVSGKIVLTGAKVREEI 236
>gi|356532171|ref|XP_003534647.1| PREDICTED: TATA-box-binding protein-like [Glycine max]
Length = 200
Score = 148 bits (374), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 69/152 (45%), Positives = 102/152 (67%), Gaps = 2/152 (1%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGA 104
+ N+V + ++ C L L+ IAL N EY + V M++R+P TTA I++SGK+ CTGA
Sbjct: 25 LQNIVSTVNLDCKLELKSIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVCTGA 84
Query: 105 TSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKHRA-AEYE 163
SE QSK+AAR+YAR +Q+LGF A+F +F++ N++G+C + F IR+ + H A + YE
Sbjct: 85 KSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYE 144
Query: 164 PELHPGVTYRITRPKATLKIFSTGGITVTACN 195
PEL PG+ YR+ +PK L IF +G I +T
Sbjct: 145 PELFPGLIYRMKQPKIVLLIFVSGKIVLTGAK 176
>gi|225435804|ref|XP_002285755.1| PREDICTED: TATA-box-binding protein-like [Vitis vinifera]
Length = 200
Score = 148 bits (374), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 69/152 (45%), Positives = 102/152 (67%), Gaps = 2/152 (1%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGA 104
+ N+V + ++ C L+L+ IAL N EY + V M++R P TTA I++SGK+ CTGA
Sbjct: 25 LQNIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIRDPKTTALIFASGKMVCTGA 84
Query: 105 TSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKHRA-AEYE 163
SE QSK+AAR+YAR +Q+LGF A+F +F++ N++G+C + F IR+ + H A + YE
Sbjct: 85 KSEHQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYE 144
Query: 164 PELHPGVTYRITRPKATLKIFSTGGITVTACN 195
PEL PG+ YR+ +PK L IF +G I +T
Sbjct: 145 PELFPGLIYRMKQPKIVLLIFVSGKIVLTGAK 176
>gi|302918240|ref|XP_003052617.1| predicted protein [Nectria haematococca mpVI 77-13-4]
gi|256733557|gb|EEU46904.1| predicted protein [Nectria haematococca mpVI 77-13-4]
Length = 253
Score = 148 bits (374), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 68/157 (43%), Positives = 106/157 (67%), Gaps = 2/157 (1%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGA 104
+ N+V + ++ C L+L+ IAL+ N EY + V M++R+P TTA I++SGK+ TGA
Sbjct: 80 LQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGA 139
Query: 105 TSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEK-HRAAEYE 163
SED SK+A+R+YAR +Q+LGF A+FT+F++ N++G+C + F IR+ + + H + YE
Sbjct: 140 KSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASRHHNFSSYE 199
Query: 164 PELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
PEL PG+ YR+ +PK L IF +G I +T +I
Sbjct: 200 PELFPGLIYRMIKPKIVLLIFVSGKIVLTGAKVREEI 236
>gi|241949839|ref|XP_002417642.1| TATA sequence-binding protein, putative; TATA-binding factor,
putative; TATA-box binding protein, putative; TATA-box
factor, putative; transcription initiation factor tfIID
TBP subunit, putative [Candida dubliniensis CD36]
gi|223640980|emb|CAX45328.1| TATA sequence-binding protein, putative [Candida dubliniensis CD36]
Length = 233
Score = 148 bits (374), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 76/199 (38%), Positives = 117/199 (58%), Gaps = 6/199 (3%)
Query: 8 TTHSSHSEQEPPPTQTVVPIQNHAPPQPPAHDPEVDI----IINNVVCSFSVRCHLNLRQ 63
T S E E T+ + I+ +P D + I + N+V + ++ C L+L+
Sbjct: 18 TFMKSIEEDEKNKTEDLDIIKKEDVDEPKQEDTDGGIGIVPTLQNIVATVNLDCRLDLKT 77
Query: 64 IALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGATSEDQSKIAARRYARCLQ 122
IAL+ N EY + V M++R P TTA I++SGK+ TGA SED SK+A+R+YAR +Q
Sbjct: 78 IALHARNAEYNPKRFAAVIMRIRDPKTTALIFASGKMVVTGAKSEDDSKLASRKYARIIQ 137
Query: 123 RLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKHRA-AEYEPELHPGVTYRITRPKATL 181
+LGF A+F +F++ N++G+ + FAIR+ + H + YEPEL PG+ YR+ +PK L
Sbjct: 138 KLGFNAKFCDFKIQNIVGSTDVKFAIRLEGLAFAHGTFSSYEPELFPGLIYRMVKPKIVL 197
Query: 182 KIFSTGGITVTACNDSNKI 200
IF +G I +T +I
Sbjct: 198 LIFVSGKIVLTGAKKREEI 216
>gi|326921220|ref|XP_003206860.1| PREDICTED: TATA box-binding protein-like protein 2-like [Meleagris
gallopavo]
Length = 328
Score = 148 bits (373), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 67/157 (42%), Positives = 108/157 (68%), Gaps = 2/157 (1%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGA 104
+ N+V + ++ C L+L+ IAL+ N EY + V M++R+P TTA I+SSGK+ CTGA
Sbjct: 154 LQNIVSTVNLACKLDLKNIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 213
Query: 105 TSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKHRA-AEYE 163
SE+QS++AAR+YAR +Q+LGF A+F +F++ N++G+C + F IR+ H+ + YE
Sbjct: 214 KSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVRFPIRLEGLVLTHQQFSSYE 273
Query: 164 PELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
PEL PG+ YR+ +P+ L IF +G + +T + ++I
Sbjct: 274 PELFPGLIYRMVKPRIVLLIFVSGKVVLTGAKERSEI 310
>gi|156392660|ref|XP_001636166.1| predicted protein [Nematostella vectensis]
gi|156223266|gb|EDO44103.1| predicted protein [Nematostella vectensis]
Length = 194
Score = 148 bits (373), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 69/157 (43%), Positives = 106/157 (67%), Gaps = 2/157 (1%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGA 104
+ N+V + ++ C L+L++IAL N EY + V M++R+P TTA I+SSGK+ CTGA
Sbjct: 21 LQNIVSTVNLGCKLDLKKIALQARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 80
Query: 105 TSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKH-RAAEYE 163
SE+QSK+AAR+YAR +Q+LGF A+FT F++ N++G+C + F IR+ H + + YE
Sbjct: 81 KSEEQSKLAARKYARVVQKLGFPAKFTEFKIQNMVGSCDVKFPIRLEGLVLAHGQFSSYE 140
Query: 164 PELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
PEL PG+ YR+ +P+ L IF +G + +T +I
Sbjct: 141 PELFPGLIYRMVKPRIVLLIFVSGKVVLTGAKVRQEI 177
>gi|354546879|emb|CCE43611.1| hypothetical protein CPAR2_212550 [Candida parapsilosis]
Length = 259
Score = 148 bits (373), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 68/157 (43%), Positives = 104/157 (66%), Gaps = 2/157 (1%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGA 104
+ N+V + ++ C L+L+ IAL+ N EY + V M++R P TTA I++SGK+ TGA
Sbjct: 86 LQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIRDPKTTALIFASGKMVVTGA 145
Query: 105 TSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKHRA-AEYE 163
SED SK+A+R+YAR +Q+LGF A+FT+F++ N++G+C + F IR+ + H + YE
Sbjct: 146 KSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDVKFPIRLEGLAFSHGTFSSYE 205
Query: 164 PELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
PEL PG+ YR+ +PK L IF +G I +T +I
Sbjct: 206 PELFPGLIYRMVKPKIVLLIFVSGKIVLTGAKQREEI 242
>gi|149642959|ref|NP_001092323.1| TATA box-binding protein-like protein 2 [Gallus gallus]
gi|148910849|tpg|DAA06035.1| TPA_inf: TATA box binding protein-like 2 [Gallus gallus]
Length = 328
Score = 148 bits (373), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 67/157 (42%), Positives = 108/157 (68%), Gaps = 2/157 (1%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGA 104
+ N+V + ++ C L+L+ IAL+ N EY + V M++R+P TTA I+SSGK+ CTGA
Sbjct: 154 LQNIVSTVNLACKLDLKNIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 213
Query: 105 TSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKHRA-AEYE 163
SE+QS++AAR+YAR +Q+LGF A+F +F++ N++G+C + F IR+ H+ + YE
Sbjct: 214 KSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVRFPIRLEGLVLTHQQFSSYE 273
Query: 164 PELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
PEL PG+ YR+ +P+ L IF +G + +T + ++I
Sbjct: 274 PELFPGLIYRMVKPRIVLLIFVSGKVVLTGAKERSEI 310
>gi|402086781|gb|EJT81679.1| TATA-box-binding protein [Gaeumannomyces graminis var. tritici
R3-111a-1]
Length = 255
Score = 148 bits (373), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 68/157 (43%), Positives = 106/157 (67%), Gaps = 2/157 (1%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGA 104
+ N+V + ++ C L+L+ IAL+ N EY + V M++R+P TTA I++SGK+ TGA
Sbjct: 82 LQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGA 141
Query: 105 TSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEK-HRAAEYE 163
SED SK+A+R+YAR +Q+LGF A+FT+F++ N++G+C + F IR+ + + H + YE
Sbjct: 142 KSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASRHHNFSSYE 201
Query: 164 PELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
PEL PG+ YR+ +PK L IF +G I +T +I
Sbjct: 202 PELFPGLIYRMIKPKIVLLIFVSGKIVLTGAKVREEI 238
>gi|400597791|gb|EJP65515.1| transcription factor TFIID [Beauveria bassiana ARSEF 2860]
Length = 253
Score = 148 bits (373), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 67/151 (44%), Positives = 104/151 (68%), Gaps = 2/151 (1%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGA 104
+ N+V + ++ C L+L+ IAL+ N EY + V M++R+P TTA I++SGK+ TGA
Sbjct: 80 LQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGA 139
Query: 105 TSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEK-HRAAEYE 163
SED SK+A+R+YAR +Q+LGF A+FT+F++ N++G+C + F IR+ + + H + YE
Sbjct: 140 KSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASRHHNFSSYE 199
Query: 164 PELHPGVTYRITRPKATLKIFSTGGITVTAC 194
PEL PG+ YR+ +PK L IF +G I +T
Sbjct: 200 PELFPGLIYRMIKPKIVLLIFVSGKIVLTGA 230
>gi|449667471|ref|XP_002160884.2| PREDICTED: TATA-box-binding protein-like isoform 1 [Hydra
magnipapillata]
Length = 255
Score = 148 bits (373), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 67/157 (42%), Positives = 107/157 (68%), Gaps = 2/157 (1%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGA 104
+ N+V + ++ C L+L++IAL+ N EY + V M++R+P TTA I+SSGK+ CTGA
Sbjct: 82 LQNIVSTVNLSCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 141
Query: 105 TSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKH-RAAEYE 163
SE+QS++AAR+YAR +Q+LGF A+F +F++ N++G+C + F IR+ H + YE
Sbjct: 142 KSEEQSRLAARKYARVIQKLGFPAKFVDFKIQNIVGSCDVKFPIRLEGLVLAHSQFCSYE 201
Query: 164 PELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
PEL PG+ YR+ +P+ L IF +G + +T ++I
Sbjct: 202 PELFPGLIYRMVKPRIVLLIFVSGKVVLTGAKVRSEI 238
>gi|448513790|ref|XP_003867010.1| Tbp1 transcription initiation factor [Candida orthopsilosis Co
90-125]
gi|380351348|emb|CCG21572.1| Tbp1 transcription initiation factor [Candida orthopsilosis Co
90-125]
Length = 251
Score = 148 bits (373), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 68/157 (43%), Positives = 104/157 (66%), Gaps = 2/157 (1%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGA 104
+ N+V + ++ C L+L+ IAL+ N EY + V M++R P TTA I++SGK+ TGA
Sbjct: 78 LQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIRDPKTTALIFASGKMVVTGA 137
Query: 105 TSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKHRA-AEYE 163
SED SK+A+R+YAR +Q+LGF A+FT+F++ N++G+C + F IR+ + H + YE
Sbjct: 138 KSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDVKFPIRLEGLAFSHGTFSSYE 197
Query: 164 PELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
PEL PG+ YR+ +PK L IF +G I +T +I
Sbjct: 198 PELFPGLIYRMVKPKIVLLIFVSGKIVLTGAKQREEI 234
>gi|17298080|dbj|BAB78514.1| TATA-box binding protein [Ephydatia fluviatilis]
Length = 281
Score = 148 bits (373), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 67/157 (42%), Positives = 106/157 (67%), Gaps = 2/157 (1%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGA 104
+ N+V + ++ C L+L++IAL+ N EY + V M++R P TTA ++SSGK+ CTGA
Sbjct: 108 LQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIRDPRTTALVFSSGKMVCTGA 167
Query: 105 TSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKH-RAAEYE 163
SED S++AAR+YAR +Q+LGF ARF F++ N++G+C + F IR+ +H + + YE
Sbjct: 168 KSEDLSRLAARKYARIIQKLGFPARFMEFKIQNMVGSCDVKFPIRLEGLVVQHSQFSSYE 227
Query: 164 PELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
PEL PG+ YR+ +P+ L IF +G + +T + +I
Sbjct: 228 PELFPGLIYRMVKPRIVLLIFVSGKVVLTGAKERTEI 264
>gi|389632499|ref|XP_003713902.1| TATA-box-binding protein [Magnaporthe oryzae 70-15]
gi|351646235|gb|EHA54095.1| TATA-box-binding protein [Magnaporthe oryzae 70-15]
gi|440473248|gb|ELQ42063.1| TATA-box-binding protein [Magnaporthe oryzae Y34]
gi|440480212|gb|ELQ60887.1| TATA-box-binding protein [Magnaporthe oryzae P131]
Length = 255
Score = 148 bits (373), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 68/157 (43%), Positives = 106/157 (67%), Gaps = 2/157 (1%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGA 104
+ N+V + ++ C L+L+ IAL+ N EY + V M++R+P TTA I++SGK+ TGA
Sbjct: 82 LQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGA 141
Query: 105 TSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEK-HRAAEYE 163
SED SK+A+R+YAR +Q+LGF A+FT+F++ N++G+C + F IR+ + + H + YE
Sbjct: 142 KSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASRHHNFSSYE 201
Query: 164 PELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
PEL PG+ YR+ +PK L IF +G I +T +I
Sbjct: 202 PELFPGLIYRMIKPKIVLLIFVSGKIVLTGAKVREEI 238
>gi|224285248|gb|ACN40350.1| unknown [Picea sitchensis]
Length = 200
Score = 148 bits (373), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 69/152 (45%), Positives = 102/152 (67%), Gaps = 2/152 (1%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGA 104
+ N+V + ++ C L+L+ IAL N EY + V M++R+P TTA I++SGK+ CTGA
Sbjct: 25 LQNIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVCTGA 84
Query: 105 TSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKHRA-AEYE 163
SE QSK+AAR+YAR +Q+LGF A F +F++ N++G+C + F IR+ + H A + YE
Sbjct: 85 KSEQQSKLAARKYARIIQKLGFPAHFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYE 144
Query: 164 PELHPGVTYRITRPKATLKIFSTGGITVTACN 195
PEL PG+ YR+ +PK L IF +G I +T
Sbjct: 145 PELFPGLIYRMKQPKIVLLIFVSGKIVLTGAK 176
>gi|147902539|ref|NP_001080921.1| TATA box-binding protein-like protein 2 [Xenopus laevis]
gi|75570954|sp|Q5UE94.1|TBPL2_XENLA RecName: Full=TATA box-binding protein-like protein 2;
Short=TBP-like protein 2; AltName: Full=TATA box-binding
protein-related factor 3; Short=TBP-related factor 3
gi|54402365|gb|AAV34742.1| TATA-binding protein 2 [Xenopus laevis]
Length = 320
Score = 148 bits (373), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 67/157 (42%), Positives = 109/157 (69%), Gaps = 2/157 (1%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGA 104
+ N+V + ++ C L+L++IAL+ N EY + V M++R+P TTA I+SSGK+ CTGA
Sbjct: 146 LQNIVSTVNLACKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 205
Query: 105 TSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKHRA-AEYE 163
SE+QS++AAR+YAR +Q+LGF A+F +F++ N++G+C + F IR+ H+ + YE
Sbjct: 206 KSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVRFPIRLEGLVLTHQQFSSYE 265
Query: 164 PELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
PEL PG+ YR+ +P+ L IF +G + +T + ++I
Sbjct: 266 PELFPGLIYRMVKPRIVLLIFVSGKVVLTGAKERSEI 302
>gi|62859883|ref|NP_001017309.1| TATA box-binding protein-like protein 2 [Xenopus (Silurana)
tropicalis]
gi|123915918|sp|Q28DH2.1|TBPL2_XENTR RecName: Full=TATA box-binding protein-like protein 2;
Short=TBP-like protein 2; Short=xTBPL2; AltName:
Full=TATA box-binding protein-related factor 3;
Short=TBP-related factor 3
gi|89274001|emb|CAJ81377.1| Novel protein similar to TBP [Xenopus (Silurana) tropicalis]
Length = 322
Score = 148 bits (373), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 67/157 (42%), Positives = 109/157 (69%), Gaps = 2/157 (1%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGA 104
+ N+V + ++ C L+L++IAL+ N EY + V M++R+P TTA I+SSGK+ CTGA
Sbjct: 148 LQNIVSTVNLACKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 207
Query: 105 TSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKHRA-AEYE 163
SE+QS++AAR+YAR +Q+LGF A+F +F++ N++G+C + F IR+ H+ + YE
Sbjct: 208 KSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVRFPIRLEGLVLTHQQFSSYE 267
Query: 164 PELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
PEL PG+ YR+ +P+ L IF +G + +T + ++I
Sbjct: 268 PELFPGLIYRMVKPRIVLLIFVSGKVVLTGAKERSEI 304
>gi|256087298|ref|XP_002579809.1| TATA-binding protein-related [Schistosoma mansoni]
gi|238665296|emb|CAZ36048.1| TATA-binding protein-related [Schistosoma mansoni]
Length = 738
Score = 148 bits (373), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 77/178 (43%), Positives = 108/178 (60%), Gaps = 8/178 (4%)
Query: 22 QTVVPIQNHAPPQPPAHDP------EVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYRR 75
+ V I + P + DP + + I NVV S++CHL L++IA VNVEY+
Sbjct: 37 EDVKDIIGNEPDKSTEEDPCNEEASSLTLSITNVVVMASLQCHLRLKEIARTSVNVEYKA 96
Query: 76 ENGMVTMKLRKPYTTASIWSSGKITCTGATSEDQSKIAARRYARCLQRLGFKARFTNFRV 135
V M+LR PYT A+IWSSGKI CTGA S ++KI ARR AR + + GF F+ +RV
Sbjct: 97 LQNHVIMRLRSPYTVATIWSSGKIWCTGANSLAKAKIGARRIARRIAKCGFPCHFSKYRV 156
Query: 136 VNVLGTCSMPFAIRILQF-SEKHRAAEYEPELHPGVTYRITRPKAT-LKIFSTGGITV 191
VN++ TC +PF +R+ + E+ YEPEL PG+T++ +T LK+FSTG I +
Sbjct: 157 VNIMATCKLPFGVRLEELVKERPMQMSYEPELAPGLTFKTDINSSTSLKLFSTGRIVI 214
>gi|406607792|emb|CCH40897.1| TATA-box-binding protein [Wickerhamomyces ciferrii]
Length = 238
Score = 148 bits (373), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 68/157 (43%), Positives = 105/157 (66%), Gaps = 2/157 (1%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGA 104
+ N+V + ++ C L+L+ IAL+ N EY + V M++R+P TTA I++SGK+ TGA
Sbjct: 65 LQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGA 124
Query: 105 TSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKHR-AAEYE 163
SED SK+A+R+YAR +Q+LGF A+FT+F++ N++G+C + F IR+ + H + YE
Sbjct: 125 KSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDVKFPIRLEGLAFSHGPFSSYE 184
Query: 164 PELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
PEL PG+ YR+ +PK L IF +G I +T +I
Sbjct: 185 PELFPGLIYRMVKPKIVLLIFVSGKIVLTGAKQREEI 221
>gi|154284482|ref|XP_001543036.1| TATA-box binding protein [Ajellomyces capsulatus NAm1]
gi|150406677|gb|EDN02218.1| TATA-box binding protein [Ajellomyces capsulatus NAm1]
Length = 268
Score = 148 bits (373), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 67/157 (42%), Positives = 106/157 (67%), Gaps = 2/157 (1%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGA 104
+ N+V + ++ C L+L+ IAL+ N EY + V M++R+P TTA I++SGK+ TGA
Sbjct: 89 LQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGA 148
Query: 105 TSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEK-HRAAEYE 163
SED SK+A+++YAR +Q+LGF A+FT+F++ N++G+C + F IR+ + + H + YE
Sbjct: 149 KSEDDSKLASKKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASRHHNFSSYE 208
Query: 164 PELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
PEL PG+ YR+ +PK L IF +G I +T +I
Sbjct: 209 PELFPGLIYRMMKPKIVLLIFVSGKIVLTGAKVREEI 245
>gi|48374984|gb|AAT42180.1| TATA sequence-binding protein 1 (TBP-1) [Zea mays]
gi|414872054|tpg|DAA50611.1| TPA: TATA sequence-binding protein 1 [Zea mays]
Length = 287
Score = 148 bits (373), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 70/154 (45%), Positives = 104/154 (67%), Gaps = 2/154 (1%)
Query: 44 IIINNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCT 102
I + N+V + ++ C L+L+ IAL N EY + V M++R+P TTA I++SGK+ CT
Sbjct: 100 IGVRNIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVCT 159
Query: 103 GATSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKHRA-AE 161
GA SE QSK+AAR+YAR +Q+LGF A+F +F++ N++G+C + F IR+ + H A +
Sbjct: 160 GAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSS 219
Query: 162 YEPELHPGVTYRITRPKATLKIFSTGGITVTACN 195
YEPEL PG+ YR+ +PK L IF +G I +T
Sbjct: 220 YEPELFPGLIYRMKQPKIVLLIFVSGKIVLTGAK 253
>gi|79313217|ref|NP_001030688.1| TATA-box-binding protein 1 [Arabidopsis thaliana]
gi|332641835|gb|AEE75356.1| TATA-box-binding protein 1 [Arabidopsis thaliana]
Length = 196
Score = 148 bits (373), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 69/152 (45%), Positives = 102/152 (67%), Gaps = 2/152 (1%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGA 104
+ N+V + ++ C L+L+ IAL N EY + V M++R+P TTA I++SGK+ CTGA
Sbjct: 25 LQNIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVCTGA 84
Query: 105 TSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKHRA-AEYE 163
SED SK+AAR+YAR +Q+LGF A+F +F++ N++G+C + F IR+ + H A + YE
Sbjct: 85 KSEDFSKMAARKYARIVQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHAAFSSYE 144
Query: 164 PELHPGVTYRITRPKATLKIFSTGGITVTACN 195
PEL PG+ YR+ PK L IF +G I +T
Sbjct: 145 PELFPGLIYRMKVPKIVLLIFVSGKIVITGAK 176
>gi|146415198|ref|XP_001483569.1| TATA-box binding protein [Meyerozyma guilliermondii ATCC 6260]
gi|146392042|gb|EDK40200.1| TATA-box binding protein [Meyerozyma guilliermondii ATCC 6260]
Length = 240
Score = 148 bits (373), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 68/157 (43%), Positives = 105/157 (66%), Gaps = 2/157 (1%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGA 104
+ N+V + ++ C L+L+ IAL+ N EY + V M++R+P TTA I++SGK+ TGA
Sbjct: 67 LQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGA 126
Query: 105 TSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKHRA-AEYE 163
SED SK+A+R+YAR +Q+LGF A+FT+F++ N++G+C + F IR+ + H + YE
Sbjct: 127 KSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDVKFPIRLEGLAFSHGTFSSYE 186
Query: 164 PELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
PEL PG+ YR+ +PK L IF +G I +T +I
Sbjct: 187 PELFPGLIYRMVKPKIVLLIFVSGRIVLTGAKQREEI 223
>gi|312382984|gb|EFR28233.1| hypothetical protein AND_04068 [Anopheles darlingi]
Length = 327
Score = 148 bits (373), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 68/157 (43%), Positives = 106/157 (67%), Gaps = 2/157 (1%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGA 104
+ N+V + ++ C L+L++IAL+ N EY + V M++R+P TTA I+SSGK+ CTGA
Sbjct: 154 LQNIVSTVNLSCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 213
Query: 105 TSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKH-RAAEYE 163
SE+ S++AAR+YAR +Q+LGF A+F +F+V N++G+C + F IR+ H R + YE
Sbjct: 214 KSEEDSRLAARKYARIIQKLGFTAKFLDFKVQNMVGSCDVRFPIRLEGLVLTHGRFSSYE 273
Query: 164 PELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
PEL PG+ YR+ +P+ L IF +G + +T +I
Sbjct: 274 PELFPGLIYRMVKPRIVLLIFVSGKVVLTGAKVRQEI 310
>gi|302758308|ref|XP_002962577.1| hypothetical protein SELMODRAFT_270329 [Selaginella moellendorffii]
gi|302824582|ref|XP_002993933.1| hypothetical protein SELMODRAFT_163230 [Selaginella moellendorffii]
gi|300138205|gb|EFJ04980.1| hypothetical protein SELMODRAFT_163230 [Selaginella moellendorffii]
gi|300169438|gb|EFJ36040.1| hypothetical protein SELMODRAFT_270329 [Selaginella moellendorffii]
Length = 199
Score = 148 bits (373), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 70/158 (44%), Positives = 109/158 (68%), Gaps = 4/158 (2%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGA 104
+ N+V + ++ C L+L+ IAL+ N EY + V M++R+P TTA I++SGK+ CTGA
Sbjct: 24 LQNIVSTVNMDCKLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVCTGA 83
Query: 105 TSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRI--LQFSEKHRAAEY 162
SE QSK+AAR+YAR +Q+LGF A+F +F++ N++G+C + F IR+ L ++ H ++ Y
Sbjct: 84 KSEQQSKLAARKYARIIQKLGFPAQFKDFKIQNIVGSCDVKFPIRLEGLAYAHGHFSS-Y 142
Query: 163 EPELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
EPEL PG+ YR+ +PK L IF +G I +T ++I
Sbjct: 143 EPELFPGLIYRMKQPKIVLLIFVSGKIVLTGAKVRDEI 180
>gi|432852539|ref|XP_004067298.1| PREDICTED: TATA-box-binding protein [Oryzias latipes]
Length = 305
Score = 147 bits (372), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 71/173 (41%), Positives = 111/173 (64%), Gaps = 2/173 (1%)
Query: 24 VVPIQNHAPPQPPAHDPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTM 82
V P+ AP P + + + N+V + ++ C L+L+ IAL N EY + V M
Sbjct: 109 VTPMTPIAPATPASESSGIVPQLQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIM 168
Query: 83 KLRKPYTTASIWSSGKITCTGATSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTC 142
++R+P TTA I+SSGK+ CTGA SE+QS++AAR+YAR +Q+LGF A+F +F++ N++G+C
Sbjct: 169 RIREPRTTALIFSSGKMVCTGAKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSC 228
Query: 143 SMPFAIRILQFSEKHRA-AEYEPELHPGVTYRITRPKATLKIFSTGGITVTAC 194
+ F IR+ H+ + YEPEL PG+ YR+ +P+ L IF +G + +T
Sbjct: 229 DVKFPIRLEGLVLTHQQFSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLTGA 281
>gi|17298076|dbj|BAB78512.1| TATA-box binding protein [Oryzias latipes]
Length = 320
Score = 147 bits (372), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 71/173 (41%), Positives = 111/173 (64%), Gaps = 2/173 (1%)
Query: 24 VVPIQNHAPPQPPAHDPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTM 82
V P+ AP P + + + N+V + ++ C L+L+ IAL N EY + V M
Sbjct: 124 VTPMTPIAPATPASESSGIVPQLQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIM 183
Query: 83 KLRKPYTTASIWSSGKITCTGATSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTC 142
++R+P TTA I+SSGK+ CTGA SE+QS++AAR+YAR +Q+LGF A+F +F++ N++G+C
Sbjct: 184 RIREPRTTALIFSSGKMVCTGAKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSC 243
Query: 143 SMPFAIRILQFSEKHRA-AEYEPELHPGVTYRITRPKATLKIFSTGGITVTAC 194
+ F IR+ H+ + YEPEL PG+ YR+ +P+ L IF +G + +T
Sbjct: 244 DVKFPIRLEGLVLTHQQFSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLTGA 296
>gi|50547559|ref|XP_501249.1| YALI0B23056p [Yarrowia lipolytica]
gi|49647115|emb|CAG83502.1| YALI0B23056p [Yarrowia lipolytica CLIB122]
Length = 227
Score = 147 bits (372), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 68/157 (43%), Positives = 105/157 (66%), Gaps = 2/157 (1%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGA 104
+ N+V + ++ C L+L+ IAL+ N EY + V M++R+P TTA I++SGK+ TGA
Sbjct: 54 LQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGA 113
Query: 105 TSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKHRA-AEYE 163
SED SK+A+R+YAR +Q+LGF A+FT+F++ N++G+C + F IR+ + H + YE
Sbjct: 114 RSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDVKFPIRLEGLAFSHGTFSSYE 173
Query: 164 PELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
PEL PG+ YR+ +PK L IF +G I +T +I
Sbjct: 174 PELFPGLIYRMVKPKIVLLIFVSGKIVLTGAKQREEI 210
>gi|15231241|ref|NP_187953.1| TATA-box-binding protein 1 [Arabidopsis thaliana]
gi|135626|sp|P28147.1|TBP1_ARATH RecName: Full=TATA-box-binding protein 1; AltName: Full=TATA
sequence-binding protein 1; Short=TBP-1; AltName:
Full=TATA-binding factor 1; AltName: Full=TATA-box
factor 1; AltName: Full=Transcription initiation factor
TFIID TBP-1 subunit
gi|1943466|pdb|1VOK|A Chain A, Arabidopsis Thaliana Tbp (Dimer)
gi|1943467|pdb|1VOK|B Chain B, Arabidopsis Thaliana Tbp (Dimer)
gi|1943469|pdb|1VOL|B Chain B, Tfiib (Human Core Domain)TBP (A.THALIANA)TATA ELEMENT
Ternary Complex
gi|7245860|pdb|1QN5|A Chain A, Crystal Structure Of The G(-26) Adenovirus Major Late
Promoter Tata Box Variant Bound To Wild-Type Tbp
(Arabidopsis Thaliana Tbp Isoform 2). Tata Element
Recognition By The Tata Box-Binding Protein Has Been
Conserved Throughout Evolution.
gi|7245861|pdb|1QN5|B Chain B, Crystal Structure Of The G(-26) Adenovirus Major Late
Promoter Tata Box Variant Bound To Wild-Type Tbp
(Arabidopsis Thaliana Tbp Isoform 2). Tata Element
Recognition By The Tata Box-Binding Protein Has Been
Conserved Throughout Evolution.
gi|7245866|pdb|1QN6|A Chain A, Crystal Structure Of The T(-26) Adenovirus Major Late
Promoter Tata Box Variant Bound To Wild-Type Tbp
(Arabidopsis Thaliana Tbp Isoform 2). Tata Element
Recognition By The Tata Box-Binding Protein Has Been
Conserved Throughout Evolution.
gi|7245867|pdb|1QN6|B Chain B, Crystal Structure Of The T(-26) Adenovirus Major Late
Promoter Tata Box Variant Bound To Wild-Type Tbp
(Arabidopsis Thaliana Tbp Isoform 2). Tata Element
Recognition By The Tata Box-Binding Protein Has Been
Conserved Throughout Evolution.
gi|7245872|pdb|1QN7|A Chain A, Crystal Structure Of The T(-27) Adenovirus Major Late
Promoter Tata Box Variant Bound To Wild-Type Tbp
(Arabidopsis Thaliana Tbp Isoform 2). Tata Element
Recognition By The Tata Box-Binding Protein Has Been
Conserved Throughout Evolution.
gi|7245873|pdb|1QN7|B Chain B, Crystal Structure Of The T(-27) Adenovirus Major Late
Promoter Tata Box Variant Bound To Wild-Type Tbp
(Arabidopsis Thaliana Tbp Isoform 2). Tata Element
Recognition By The Tata Box-Binding Protein Has Been
Conserved Throughout Evolution.
gi|7245878|pdb|1QN8|A Chain A, Crystal Structure Of The T(-28) Adenovirus Major Late
Promoter Tata Box Variant Bound To Wild-Type Tbp
(Arabidopsis Thaliana Tbp Isoform 2). Tata Element
Recognition By The Tata Box-Binding Protein Has Been
Conserved Throughout Evolution.
gi|7245879|pdb|1QN8|B Chain B, Crystal Structure Of The T(-28) Adenovirus Major Late
Promoter Tata Box Variant Bound To Wild-Type Tbp
(Arabidopsis Thaliana Tbp Isoform 2). Tata Element
Recognition By The Tata Box-Binding Protein Has Been
Conserved Throughout Evolution.
gi|7245884|pdb|1QN9|A Chain A, Crystal Structure Of The C(-29) Adenovirus Major Late
Promoter Tata Box Variant Bound To Wild-Type Tbp
(Arabidopsis Thaliana Tbp Isoform 2). Tata Element
Recognition By The Tata Box-Binding Protein Has Been
Conserved Throughout Evolution.
gi|7245885|pdb|1QN9|B Chain B, Crystal Structure Of The C(-29) Adenovirus Major Late
Promoter Tata Box Variant Bound To Wild-Type Tbp
(Arabidopsis Thaliana Tbp Isoform 2). Tata Element
Recognition By The Tata Box-Binding Protein Has Been
Conserved Throughout Evolution.
gi|7245890|pdb|1QNA|A Chain A, Crystal Structure Of The T(-30) Adenovirus Major Late
Promoter Tata Box Variant Bound To Wild-Type Tbp
(Arabidopsis Thaliana Tbp Isoform 2). Tata Element
Recognition By The Tata Box-Binding Protein Has Been
Conserved Throughout Evolution.
gi|7245891|pdb|1QNA|B Chain B, Crystal Structure Of The T(-30) Adenovirus Major Late
Promoter Tata Box Variant Bound To Wild-Type Tbp
(Arabidopsis Thaliana Tbp Isoform 2). Tata Element
Recognition By The Tata Box-Binding Protein Has Been
Conserved Throughout Evolution.
gi|7245896|pdb|1QNB|A Chain A, Crystal Structure Of The T(-25) Adenovirus Major Late
Promoter Tata Box Variant Bound To Wild-Type Tbp
(Arabidopsis Thaliana Tbp Isoform 2). Tata Element
Recognition By The Tata Box-Binding Protein Has Been
Conserved Throughout Evolution.
gi|7245897|pdb|1QNB|B Chain B, Crystal Structure Of The T(-25) Adenovirus Major Late
Promoter Tata Box Variant Bound To Wild-Type Tbp
(Arabidopsis Thaliana Tbp Isoform 2). Tata Element
Recognition By The Tata Box-Binding Protein Has Been
Conserved Throughout Evolution.
gi|7245902|pdb|1QNC|A Chain A, Crystal Structure Of The A(-31) Adenovirus Major Late
Promoter Tata Box Variant Bound To Wild-Type Tbp
(Arabidopsis Thaliana Tbp Isoform 2). Tata Element
Recognition By The Tata Box-Binding Protein Has Been
Conserved Throughout Evolution.
gi|7245903|pdb|1QNC|B Chain B, Crystal Structure Of The A(-31) Adenovirus Major Late
Promoter Tata Box Variant Bound To Wild-Type Tbp
(Arabidopsis Thaliana Tbp Isoform 2). Tata Element
Recognition By The Tata Box-Binding Protein Has Been
Conserved Throughout Evolution.
gi|7245908|pdb|1QNE|A Chain A, Crystal Structure Of The Adenovirus Major Late Promoter
Tata Box Bound To Wild-Type Tbp (Arabidopsis Thaliana
Tbp Isoform 2).
gi|7245909|pdb|1QNE|B Chain B, Crystal Structure Of The Adenovirus Major Late Promoter
Tata Box Bound To Wild-Type Tbp (Arabidopsis Thaliana
Tbp Isoform 2).
gi|7245938|pdb|1QN3|A Chain A, Crystal Structure Of The C(-25) Adenovirus Major Late
Promoter Tata Box Variant Bound To Wild-Type Tbp
(Arabidopsis Thaliana Tbp Isoform 2). Tata Element
Recognition By The Tata Box-Binding Protein Has Been
Conserved Throughout Evolution.
gi|7245939|pdb|1QN3|B Chain B, Crystal Structure Of The C(-25) Adenovirus Major Late
Promoter Tata Box Variant Bound To Wild-Type Tbp
(Arabidopsis Thaliana Tbp Isoform 2). Tata Element
Recognition By The Tata Box-Binding Protein Has Been
Conserved Throughout Evolution.
gi|7246010|pdb|1QN4|A Chain A, Crystal Structure Of The T(-24) Adenovirus Major Late
Promoter Tata Box Variant Bound To Wild-Type Tbp
(Arabidopsis Thaliana Tbp Isoform 2). Tata Element
Recognition By The Tata Box-Binding Protein Has Been
Conserved Throughout Evolution.
gi|7246011|pdb|1QN4|B Chain B, Crystal Structure Of The T(-24) Adenovirus Major Late
Promoter Tata Box Variant Bound To Wild-Type Tbp
(Arabidopsis Thaliana Tbp Isoform 2). Tata Element
Recognition By The Tata Box-Binding Protein Has Been
Conserved Throughout Evolution.
gi|11692888|gb|AAG40047.1|AF324696_1 AT3g13445 [Arabidopsis thaliana]
gi|11935207|gb|AAG42019.1|AF327429_1 putative transcription initiation factor TFIID-1 [Arabidopsis
thaliana]
gi|13194816|gb|AAK15570.1|AF349523_1 putative TATA sequence-binding transcription initiation factor
protein [Arabidopsis thaliana]
gi|16548|emb|CAA38743.1| transcription initiation factor II [Arabidopsis thaliana]
gi|9280296|dbj|BAB01751.1| transcription initiation factor TFIID-1 (TATA-box factor 1) (TATA
sequence-binding protein 1) (TBP-1) [Arabidopsis
thaliana]
gi|15451056|gb|AAK96799.1| transcription initiation factor TFIID-1 (TATA-box factor 1) (TATA
sequence-binding protein 1) (TBP-1) [Arabidopsis
thaliana]
gi|18377408|gb|AAL66870.1| transcription initiation factor TFIID-1 [Arabidopsis thaliana]
gi|21537103|gb|AAM61444.1| transcription initiation factor TFIID-1 (TATA sequence-binding
protein 1) [Arabidopsis thaliana]
gi|39545928|gb|AAR28027.1| TBP1 [Arabidopsis thaliana]
gi|225898637|dbj|BAH30449.1| hypothetical protein [Arabidopsis thaliana]
gi|332641834|gb|AEE75355.1| TATA-box-binding protein 1 [Arabidopsis thaliana]
gi|227074|prf||1613452B transcription initiation factor TFIID-2
Length = 200
Score = 147 bits (372), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 69/152 (45%), Positives = 102/152 (67%), Gaps = 2/152 (1%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGA 104
+ N+V + ++ C L+L+ IAL N EY + V M++R+P TTA I++SGK+ CTGA
Sbjct: 25 LQNIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVCTGA 84
Query: 105 TSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKHRA-AEYE 163
SED SK+AAR+YAR +Q+LGF A+F +F++ N++G+C + F IR+ + H A + YE
Sbjct: 85 KSEDFSKMAARKYARIVQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHAAFSSYE 144
Query: 164 PELHPGVTYRITRPKATLKIFSTGGITVTACN 195
PEL PG+ YR+ PK L IF +G I +T
Sbjct: 145 PELFPGLIYRMKVPKIVLLIFVSGKIVITGAK 176
>gi|326522452|dbj|BAK07688.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 233
Score = 147 bits (372), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 68/158 (43%), Positives = 105/158 (66%), Gaps = 2/158 (1%)
Query: 45 IINNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTG 103
++ N+V + ++ C L+L+QIAL N EY + V M++R P TTA I++SGK+ CTG
Sbjct: 57 VLQNIVSTVNLDCRLDLKQIALQARNAEYNPKRFAAVIMRIRDPKTTALIFASGKMVCTG 116
Query: 104 ATSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKHRA-AEY 162
A SE+ SK+AAR+YAR +Q+LGF A F +F++ N++ +C + F IR+ + H A + Y
Sbjct: 117 AKSEEHSKLAARKYARIVQKLGFPATFKDFKIQNIVASCDVKFPIRLEGLAYSHGAFSSY 176
Query: 163 EPELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
EPEL PG+ YR+ +PK L +F +G I +T ++I
Sbjct: 177 EPELFPGLIYRMKQPKIVLLVFVSGKIVLTGAKVRDEI 214
>gi|320588959|gb|EFX01427.1| RNA polymerase 1 and 3 transcription factor complex component
[Grosmannia clavigera kw1407]
Length = 268
Score = 147 bits (372), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 67/149 (44%), Positives = 102/149 (68%), Gaps = 2/149 (1%)
Query: 48 NVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGATS 106
N+V + ++ C L+L+ IAL+ N EY + V M++R P TTA I++SGK+ TGA S
Sbjct: 97 NIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIRDPKTTALIFASGKMVVTGAKS 156
Query: 107 EDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEK-HRAAEYEPE 165
ED SK+A+R+YAR +Q+LGF A+FT+F++ N++G+C + F IR+ + + H + YEPE
Sbjct: 157 EDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASRHHNFSSYEPE 216
Query: 166 LHPGVTYRITRPKATLKIFSTGGITVTAC 194
L PG+ YR+ +PK L IF +G I +T
Sbjct: 217 LFPGLIYRMIKPKIVLLIFVSGKIVLTGA 245
>gi|135641|sp|P26356.1|TBP1_WHEAT RecName: Full=TATA-box-binding protein 1; AltName: Full=TATA
sequence-binding protein 1; Short=TBP-1; AltName:
Full=TATA-binding factor 1; AltName: Full=TATA-box
factor 1; AltName: Full=Transcription initiation factor
TFIID TBP-1 subunit
gi|21875|emb|CAA42531.1| TATA binding protein (TFIID) [Triticum aestivum]
Length = 233
Score = 147 bits (372), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 68/158 (43%), Positives = 105/158 (66%), Gaps = 2/158 (1%)
Query: 45 IINNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTG 103
++ N+V + ++ C L+L+QIAL N EY + V M++R P TTA I++SGK+ CTG
Sbjct: 57 VLQNIVSTVNLDCRLDLKQIALQARNAEYNPKRFAAVIMRIRDPKTTALIFASGKMVCTG 116
Query: 104 ATSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKHRA-AEY 162
A SE+ SK+AAR+YAR +Q+LGF A F +F++ N++ +C + F IR+ + H A + Y
Sbjct: 117 AKSEEHSKLAARKYARIVQKLGFPATFKDFKIQNIVASCDVKFPIRLEGLAYSHGAFSSY 176
Query: 163 EPELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
EPEL PG+ YR+ +PK L +F +G I +T ++I
Sbjct: 177 EPELFPGLIYRMKQPKIVLLVFVSGKIVLTGAKVRDEI 214
>gi|47551211|ref|NP_999786.1| TATA-box-binding protein [Strongylocentrotus purpuratus]
gi|3122940|sp|P91809.1|TBP_STRPU RecName: Full=TATA-box-binding protein; AltName: Full=TATA
sequence-binding protein; Short=TBP; AltName:
Full=TATA-binding factor; AltName: Full=TATA-box factor;
AltName: Full=Transcription initiation factor TFIID TBP
subunit
gi|1840134|gb|AAB47272.1| TATA binding protein [Strongylocentrotus purpuratus]
Length = 265
Score = 147 bits (372), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 74/187 (39%), Positives = 116/187 (62%), Gaps = 6/187 (3%)
Query: 20 PTQTVVPIQNHAP--PQPPAHDPEVDII--INNVVCSFSVRCHLNLRQIALNGVNVEYR- 74
P + +P AP P PA I+ + N+V + ++ C L+L++IAL+ N EY
Sbjct: 61 PGSSFIPPSPMAPLTPATPASSESSGIVPQLQNIVSTVNLNCRLDLKKIALHARNAEYNP 120
Query: 75 RENGMVTMKLRKPYTTASIWSSGKITCTGATSEDQSKIAARRYARCLQRLGFKARFTNFR 134
+ V M++R+P TTA I+SSGK+ CTGA ED S++AAR+YAR +Q+LGF A+F +F+
Sbjct: 121 KRFAAVIMRIREPRTTALIFSSGKMVCTGAKREDNSRLAARKYARVVQKLGFAAKFLDFK 180
Query: 135 VVNVLGTCSMPFAIRILQFSEKH-RAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTA 193
+ N++G+C + F IR+ H + + YEPEL PG+ YR+ +P+ L IF +G + +T
Sbjct: 181 IQNMVGSCDVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLTG 240
Query: 194 CNDSNKI 200
+I
Sbjct: 241 AKVRQEI 247
>gi|339961162|pdb|1VTO|A Chain A, 1.9 A Resolution Refined Structure Of Tbp Recognizing The
Minor Groove Of Tataaaag
gi|339961163|pdb|1VTO|B Chain B, 1.9 A Resolution Refined Structure Of Tbp Recognizing The
Minor Groove Of Tataaaag
Length = 190
Score = 147 bits (372), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 69/152 (45%), Positives = 102/152 (67%), Gaps = 2/152 (1%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGA 104
+ N+V + ++ C L+L+ IAL N EY + V M++R+P TTA I++SGK+ CTGA
Sbjct: 15 LQNIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVCTGA 74
Query: 105 TSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKHRA-AEYE 163
SED SK+AAR+YAR +Q+LGF A+F +F++ N++G+C + F IR+ + H A + YE
Sbjct: 75 KSEDFSKMAARKYARIVQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHAAFSSYE 134
Query: 164 PELHPGVTYRITRPKATLKIFSTGGITVTACN 195
PEL PG+ YR+ PK L IF +G I +T
Sbjct: 135 PELFPGLIYRMKVPKIVLLIFVSGKIVITGAK 166
>gi|218187146|gb|EEC69573.1| hypothetical protein OsI_38882 [Oryza sativa Indica Group]
Length = 221
Score = 147 bits (372), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 68/150 (45%), Positives = 103/150 (68%), Gaps = 2/150 (1%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGA 104
+ N+V + ++ C L+L+ IAL N EY + V M++R+P TTA I++SGK+ CTGA
Sbjct: 29 LQNIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVCTGA 88
Query: 105 TSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKHRA-AEYE 163
SE QSK+AAR+YAR +Q+LGF A+F +F++ N++G+C + F IR+ + H A + YE
Sbjct: 89 KSEQQSKLAARKYARIIQKLGFAAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYE 148
Query: 164 PELHPGVTYRITRPKATLKIFSTGGITVTA 193
PEL PG+ YR+ +PK L IF +G + +T
Sbjct: 149 PELFPGLIYRMKQPKIVLLIFVSGKLVLTG 178
>gi|157265561|ref|NP_001098076.1| TATA box-binding protein-like protein 2 [Pan troglodytes]
gi|166987366|sp|A6H907.1|TBPL2_PANTR RecName: Full=TATA box-binding protein-like protein 2;
Short=TBP-like protein 2; AltName: Full=TATA box-binding
protein-related factor 3; Short=TBP-related factor 3
gi|148910843|tpg|DAA06032.1| TPA_inf: TATA box binding protein-like 2 [Pan troglodytes]
Length = 376
Score = 147 bits (372), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 66/151 (43%), Positives = 105/151 (69%), Gaps = 2/151 (1%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGA 104
+ N+V + ++ C L+L++IAL+ N EY + V M++R+P TTA I+SSGK+ CTGA
Sbjct: 202 LQNIVSTVNLACKLDLKKIALHAKNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 261
Query: 105 TSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKHRA-AEYE 163
SE+QS++AAR+YAR +Q+LGF A+F +F++ N++G+C + F IR+ H+ + YE
Sbjct: 262 KSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSYE 321
Query: 164 PELHPGVTYRITRPKATLKIFSTGGITVTAC 194
PEL PG+ YR+ +P+ L IF +G + +T
Sbjct: 322 PELFPGLIYRMIKPRIVLLIFVSGKVVLTGA 352
>gi|37726728|gb|AAO34515.1| TATA-binding protein [Petromyzon marinus]
Length = 292
Score = 147 bits (372), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 68/157 (43%), Positives = 107/157 (68%), Gaps = 2/157 (1%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGA 104
+ N+V + ++ C L+L++IAL+ N EY + V M++R+P TTA I+SSGK+ CTGA
Sbjct: 118 LQNIVSTVNLCCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 177
Query: 105 TSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKHRA-AEYE 163
SEDQS++AAR+YAR +Q+LGF A+F +F++ N++G+C + F IR+ H+ + YE
Sbjct: 178 KSEDQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSYE 237
Query: 164 PELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
PEL PG+ YR+ +P+ L IF +G + +T +I
Sbjct: 238 PELFPGLIYRMVKPRIVLLIFVSGKVVLTGAKVRGEI 274
>gi|213401857|ref|XP_002171701.1| TATA-box-binding protein [Schizosaccharomyces japonicus yFS275]
gi|211999748|gb|EEB05408.1| TATA-box-binding protein [Schizosaccharomyces japonicus yFS275]
Length = 231
Score = 147 bits (372), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 68/157 (43%), Positives = 105/157 (66%), Gaps = 2/157 (1%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGA 104
+ N+V + ++ C L+L+ IAL+ N EY + V M++R+P TTA I++SGK+ TGA
Sbjct: 58 LQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGA 117
Query: 105 TSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKHRA-AEYE 163
SED SK+A+R+YAR +Q+LGF A+FT+F++ N++G+C + F IR+ + H + YE
Sbjct: 118 KSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDVKFPIRLEGLAYSHGTFSSYE 177
Query: 164 PELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
PEL PG+ YR+ +PK L IF +G I +T +I
Sbjct: 178 PELFPGLIYRMVKPKIVLLIFVSGKIVLTGAKVREEI 214
>gi|357146320|ref|XP_003573949.1| PREDICTED: TATA-box-binding protein 1-like [Brachypodium
distachyon]
Length = 235
Score = 147 bits (372), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 68/158 (43%), Positives = 105/158 (66%), Gaps = 2/158 (1%)
Query: 45 IINNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTG 103
++ N+V + ++ C L+L+QIAL N EY + V M++R P TTA I++SGK+ CTG
Sbjct: 59 VLQNIVSTVNLDCRLDLKQIALQARNAEYNPKRFAAVIMRIRDPKTTALIFASGKMVCTG 118
Query: 104 ATSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKHRA-AEY 162
A SE+ SK+AAR+YAR +Q+LGF A F +F++ N++ +C + F IR+ + H A + Y
Sbjct: 119 AKSEEHSKLAARKYARIVQKLGFPATFKDFKIQNIVASCDVKFPIRLEGLAYSHGAFSSY 178
Query: 163 EPELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
EPEL PG+ YR+ +PK L +F +G I +T ++I
Sbjct: 179 EPELFPGLIYRMKQPKIVLLVFVSGKIVLTGAKVRDEI 216
>gi|37726742|gb|AAO34521.1| TATA-binding protein [Eptatretus stoutii]
Length = 324
Score = 147 bits (372), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 68/157 (43%), Positives = 107/157 (68%), Gaps = 2/157 (1%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGA 104
+ N+V + ++ C L+L++IAL+ N EY + V M++R+P TTA I+SSGK+ CTGA
Sbjct: 150 LQNIVSTVNLCCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 209
Query: 105 TSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKHRA-AEYE 163
SEDQS++AAR+YAR +Q+LGF A+F +F++ N++G+C + F IR+ H+ + YE
Sbjct: 210 KSEDQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSYE 269
Query: 164 PELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
PEL PG+ YR+ +P+ L IF +G + +T +I
Sbjct: 270 PELFPGLIYRMVKPRIVLLIFVSGKVVLTGAKVRTEI 306
>gi|46128099|ref|XP_388603.1| hypothetical protein FG08427.1 [Gibberella zeae PH-1]
Length = 290
Score = 147 bits (372), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 77/204 (37%), Positives = 117/204 (57%), Gaps = 8/204 (3%)
Query: 5 GMTTTHSSHSEQEPPPTQTVVPIQNHAPPQPPAHDPEVDIIINNVVCSFSVRCHLNLRQI 64
G T H+ Q+ V P A P + + N+V + ++ C L+L+ I
Sbjct: 40 GDATQQPPHNGQQAANGNGVAPATPVATPAATQGPSGITPTLQNIVATVNLDCRLDLKTI 99
Query: 65 ALNGVNVEYR-------RENGMVTMKLRKPYTTASIWSSGKITCTGATSEDQSKIAARRY 117
AL+ N EY R V M++R+P TTA I++SGK+ TGA SED SK+A+R+Y
Sbjct: 100 ALHARNAEYNPKVHQTLRRFAAVIMRIREPKTTALIFASGKMVVTGAKSEDDSKLASRKY 159
Query: 118 ARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKHRA-AEYEPELHPGVTYRITR 176
AR +Q+LGF A+FT+F++ N++G+C + F IR+ + +H + YEPEL PG+ YR+ +
Sbjct: 160 ARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASRHHNFSSYEPELFPGLIYRMIK 219
Query: 177 PKATLKIFSTGGITVTACNDSNKI 200
PK L IF +G I +T +I
Sbjct: 220 PKIVLLIFVSGKIVLTGAKVREEI 243
>gi|328768487|gb|EGF78533.1| Tata-Box binding protein ytbp [Batrachochytrium dendrobatidis
JAM81]
Length = 218
Score = 147 bits (372), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 69/158 (43%), Positives = 109/158 (68%), Gaps = 4/158 (2%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGA 104
+ N+V + ++ C L+L+ IAL+ N EY + V M++R+P TTA I++SGK+ TGA
Sbjct: 45 LQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGA 104
Query: 105 TSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRI--LQFSEKHRAAEY 162
SED SK+A+R+YAR +Q+LGF+A+FT+F++ N++G+C + F IR+ L ++ H ++ Y
Sbjct: 105 KSEDNSKLASRKYARIIQKLGFQAKFTDFKIQNIVGSCDVKFPIRLEGLAYAHGHFSS-Y 163
Query: 163 EPELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
EPEL PG+ YR+ +PK L IF +G I +T +I
Sbjct: 164 EPELFPGLIYRMVKPKIVLLIFVSGKIVLTGAKVREEI 201
>gi|291241110|ref|XP_002740460.1| PREDICTED: TATA box binding protein-like [Saccoglossus kowalevskii]
Length = 293
Score = 147 bits (371), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 74/200 (37%), Positives = 120/200 (60%), Gaps = 2/200 (1%)
Query: 3 TAGMTTTHSSHSEQEPPPTQTVVPIQNHAPPQPPAHDPEVDIIINNVVCSFSVRCHLNLR 62
++ M+ T S P +P+ P P + + + N+V + ++ C L+L+
Sbjct: 76 SSQMSVTQSLPGASSMYPATPALPMTPMTPATPLSDGSGIVPQLQNIVSTVNLGCKLDLK 135
Query: 63 QIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGATSEDQSKIAARRYARCL 121
+IAL+ N EY + V M++R+P TTA I+SSGK+ CTGA SED S++AAR+YAR +
Sbjct: 136 KIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKSEDFSRLAARKYARVI 195
Query: 122 QRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKH-RAAEYEPELHPGVTYRITRPKAT 180
Q+LGF A+F +F++ N++G+C + F IR+ H + + YEPEL PG+ YR+ +P+
Sbjct: 196 QKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIV 255
Query: 181 LKIFSTGGITVTACNDSNKI 200
L IF +G + +T +I
Sbjct: 256 LLIFVSGKVVLTGAKVRKEI 275
>gi|217075508|gb|ACJ86114.1| unknown [Medicago truncatula]
Length = 200
Score = 147 bits (371), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 69/152 (45%), Positives = 102/152 (67%), Gaps = 2/152 (1%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGA 104
+ N+V + ++ C L L+ IAL N EY + V M++R+P TTA I++SGK+ CTGA
Sbjct: 25 LQNIVSTVNLDCKLELKSIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVCTGA 84
Query: 105 TSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKHRA-AEYE 163
SE QSK+AAR+YAR +Q+LGF A+F +F++ N++G+C + F IR+ + H A + YE
Sbjct: 85 KSEVQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYE 144
Query: 164 PELHPGVTYRITRPKATLKIFSTGGITVTACN 195
PEL PG+ YR+ +PK L IF +G I +T
Sbjct: 145 PELFPGLIYRMKQPKIVLLIFVSGKIVLTGAK 176
>gi|17298078|dbj|BAB78513.1| TATA-box binding protein [Lethenteron reissneri]
Length = 301
Score = 147 bits (371), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 68/157 (43%), Positives = 107/157 (68%), Gaps = 2/157 (1%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGA 104
+ N+V + ++ C L+L++IAL+ N EY + V M++R+P TTA I+SSGK+ CTGA
Sbjct: 127 LQNIVSTVNLCCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 186
Query: 105 TSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKHRA-AEYE 163
SEDQS++AAR+YAR +Q+LGF A+F +F++ N++G+C + F IR+ H+ + YE
Sbjct: 187 KSEDQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSYE 246
Query: 164 PELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
PEL PG+ YR+ +P+ L IF +G + +T +I
Sbjct: 247 PELFPGLIYRMVKPRIVLLIFVSGKVVLTGAKVRGEI 283
>gi|338726931|ref|XP_001496050.2| PREDICTED: TATA box-binding protein-like protein 2-like [Equus
caballus]
Length = 555
Score = 147 bits (371), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 69/157 (43%), Positives = 106/157 (67%), Gaps = 2/157 (1%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGA 104
+ NVV + ++ C L+L++IAL N EY + V M++R+P TTA I+SSGKI CTGA
Sbjct: 382 LQNVVSTANLACKLDLKKIALQARNAEYNPKRFAAVIMRIREPRTTALIFSSGKIVCTGA 441
Query: 105 TSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKHRA-AEYE 163
SE+QS++AAR++AR +Q+LGF ARF +F++ N++G+C + F IR+ H+ YE
Sbjct: 442 RSEEQSRLAARKFARVIQKLGFPARFLDFKIQNLVGSCDVRFPIRLEGLVLTHQQFCSYE 501
Query: 164 PELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
PEL PG+ YR+ P+ L IF +G + +T + ++I
Sbjct: 502 PELFPGLIYRMVNPRVVLLIFVSGKVVLTGAKERSEI 538
>gi|339961157|pdb|1VTL|E Chain E, Co-Crystal Structure Of Tbp Recognizing The Minor Groove
Of A Tata Element
gi|339961158|pdb|1VTL|F Chain F, Co-Crystal Structure Of Tbp Recognizing The Minor Groove
Of A Tata Element
Length = 186
Score = 147 bits (371), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 69/152 (45%), Positives = 102/152 (67%), Gaps = 2/152 (1%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGA 104
+ N+V + ++ C L+L+ IAL N EY + V M++R+P TTA I++SGK+ CTGA
Sbjct: 13 LQNIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVCTGA 72
Query: 105 TSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKHRA-AEYE 163
SED SK+AAR+YAR +Q+LGF A+F +F++ N++G+C + F IR+ + H A + YE
Sbjct: 73 KSEDFSKMAARKYARIVQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHAAFSSYE 132
Query: 164 PELHPGVTYRITRPKATLKIFSTGGITVTACN 195
PEL PG+ YR+ PK L IF +G I +T
Sbjct: 133 PELFPGLIYRMKVPKIVLLIFVSGKIVITGAK 164
>gi|328856236|gb|EGG05358.1| hypothetical protein MELLADRAFT_75016 [Melampsora larici-populina
98AG31]
Length = 233
Score = 147 bits (371), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 68/157 (43%), Positives = 105/157 (66%), Gaps = 2/157 (1%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGA 104
+ N+V + ++ C L+L+ IAL+ N EY + V M++R+P TTA I++SGK+ TGA
Sbjct: 60 LQNIVATVNLECRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGA 119
Query: 105 TSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKH-RAAEYE 163
SED S++AAR+YAR +Q+LGF+A+FT F++ N++G+C + F IR+ + H + YE
Sbjct: 120 KSEDDSRLAARKYARIVQKLGFEAKFTEFKIQNIVGSCDVKFPIRLEGLAYNHGHFSSYE 179
Query: 164 PELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
PEL PG+ YR+ +PK L IF +G I +T +I
Sbjct: 180 PELFPGLIYRMVKPKVVLLIFVSGKIVLTGAKVREEI 216
>gi|405124108|gb|AFR98870.1| general RNA polymerase II transcription factor [Cryptococcus
neoformans var. grubii H99]
Length = 232
Score = 147 bits (371), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 77/198 (38%), Positives = 118/198 (59%), Gaps = 8/198 (4%)
Query: 5 GMTTTHSSHSEQEPPPTQTVVPIQNHAPPQPPAHDPEVDIIINNVVCSFSVRCHLNLRQI 64
G+ T S PP + V + P+ A D V + N+V + ++ C L+L+ I
Sbjct: 23 GIQTLDGEGSLATRPPQKAVASV-----PEITAVDGLVPTL-QNIVATVNLDCRLDLKTI 76
Query: 65 ALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGATSEDQSKIAARRYARCLQR 123
AL+ N EY R V M++R P TTA I++SGK+ TGA SED S++A+R+YAR +Q+
Sbjct: 77 ALHARNAEYNPRRFAAVVMRIRDPRTTALIFASGKMVVTGAKSEDDSRLASRKYARIIQK 136
Query: 124 LGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKHRA-AEYEPELHPGVTYRITRPKATLK 182
LGF+A+F F++ N++G+C + F IR+ + H A + YEPEL PG+ YR+ +PK +
Sbjct: 137 LGFEAKFAEFKIQNMVGSCDVKFPIRLEGLAFSHGAFSSYEPELFPGLIYRMLKPKVVIL 196
Query: 183 IFSTGGITVTACNDSNKI 200
IF +G I +T +I
Sbjct: 197 IFVSGKIVLTGAKVREEI 214
>gi|242022166|ref|XP_002431512.1| trf2 protein, putative [Pediculus humanus corporis]
gi|212516806|gb|EEB18774.1| trf2 protein, putative [Pediculus humanus corporis]
Length = 298
Score = 147 bits (371), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 77/203 (37%), Positives = 123/203 (60%), Gaps = 5/203 (2%)
Query: 2 TTAGMTTTHSSHSEQEPPPTQTVVPI--QNHAPPQPPAHDPEVDIIINNVVCSFSVRCHL 59
T + S S ++ PP +V P Q P P + D + + N+V + ++ C L
Sbjct: 80 TPVSVQLLQGSASIRDNPPL-SVAPATPQPMTPMTPASVDSGIVPQLQNIVSTVNLGCKL 138
Query: 60 NLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGATSEDQSKIAARRYA 118
+L++IA++ N EY + V M++R+P TTA I+SSGK+ CTGA SED S++AAR+YA
Sbjct: 139 DLKKIAIHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKSEDDSRLAARKYA 198
Query: 119 RCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKH-RAAEYEPELHPGVTYRITRP 177
R +Q+LGF A+F +F++ N++G+C + F IR+ H + + YEPEL PG+ YR+ +P
Sbjct: 199 RIIQKLGFAAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKP 258
Query: 178 KATLKIFSTGGITVTACNDSNKI 200
+ L IF +G + +T +I
Sbjct: 259 RIVLLIFVSGKVVLTGAKVRQEI 281
>gi|157167852|ref|XP_001662432.1| tata-box binding protein [Aedes aegypti]
gi|108871290|gb|EAT35515.1| AAEL012330-PA [Aedes aegypti]
Length = 319
Score = 147 bits (371), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 68/164 (41%), Positives = 109/164 (66%), Gaps = 2/164 (1%)
Query: 39 DPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSG 97
+P + + N+V + ++ C L+L++IAL+ N EY + V M++R+P TTA I+SSG
Sbjct: 139 EPAILPQLQNIVSTVNLSCRLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSG 198
Query: 98 KITCTGATSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKH 157
K+ CTGA SE+ S++AAR+YAR +Q+LGF A+F +F+V N++G+C + F IR+ H
Sbjct: 199 KMVCTGAKSEEDSRLAARKYARIIQKLGFTAKFLDFKVQNMVGSCDVRFPIRLEGLVLTH 258
Query: 158 -RAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
+ + YEPEL PG+ YR+ +P+ L IF +G + +T +I
Sbjct: 259 GKFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLTGAKVRQEI 302
>gi|37726732|gb|AAO34517.1| TATA-binding protein isoform 2 [Branchiostoma floridae]
Length = 329
Score = 147 bits (371), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 70/170 (41%), Positives = 109/170 (64%), Gaps = 2/170 (1%)
Query: 33 PQPPAHDPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTA 91
P PA + + N+V + ++ C L+L++IAL+ N EY + V M++R P TTA
Sbjct: 142 PATPAEGSGIVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIRDPRTTA 201
Query: 92 SIWSSGKITCTGATSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRIL 151
I+SSGK+ CTGA SEDQS++AAR+YAR +Q+LGF +F +F++ N++G+C + F IR+
Sbjct: 202 LIFSSGKMVCTGAKSEDQSRLAARKYARVVQKLGFPCKFLDFKIQNMVGSCDVKFPIRLE 261
Query: 152 QFSEKH-RAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
H + + YEPEL PG+ YR+ +P+ L IF +G + +T +I
Sbjct: 262 GLVLTHAQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLTGAKVREEI 311
>gi|37726730|gb|AAO34516.1| TATA-binding protein isoform 1 [Branchiostoma floridae]
gi|37726734|gb|AAO34519.1| TATA-binding protein isoform 3 [Branchiostoma floridae]
Length = 331
Score = 147 bits (371), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 70/170 (41%), Positives = 109/170 (64%), Gaps = 2/170 (1%)
Query: 33 PQPPAHDPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTA 91
P PA + + N+V + ++ C L+L++IAL+ N EY + V M++R P TTA
Sbjct: 144 PATPAEGSGIVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIRDPRTTA 203
Query: 92 SIWSSGKITCTGATSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRIL 151
I+SSGK+ CTGA SEDQS++AAR+YAR +Q+LGF +F +F++ N++G+C + F IR+
Sbjct: 204 LIFSSGKMVCTGAKSEDQSRLAARKYARVVQKLGFPCKFLDFKIQNMVGSCDVKFPIRLE 263
Query: 152 QFSEKH-RAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
H + + YEPEL PG+ YR+ +P+ L IF +G + +T +I
Sbjct: 264 GLVLTHAQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLTGAKVREEI 313
>gi|540193|gb|AAA79367.1| TATA binding protein [Pneumocystis carinii]
Length = 230
Score = 147 bits (371), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 68/157 (43%), Positives = 105/157 (66%), Gaps = 2/157 (1%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGA 104
+ N+V + ++ C L+L+ IAL+ N EY + V M++R+P TTA I++SGK+ TGA
Sbjct: 56 LQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGA 115
Query: 105 TSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKHRA-AEYE 163
SED SK+A+R+YAR +Q+LGF A+FT+F++ N++G+C + F IR+ + H + YE
Sbjct: 116 KSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDVKFPIRLEGLAYSHGTFSSYE 175
Query: 164 PELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
PEL PG+ YR+ +PK L IF +G I +T +I
Sbjct: 176 PELFPGLIYRMVKPKIVLLIFVSGKIVLTGAKVREEI 212
>gi|401625996|gb|EJS43965.1| spt15p [Saccharomyces arboricola H-6]
Length = 240
Score = 147 bits (371), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 75/202 (37%), Positives = 117/202 (57%), Gaps = 10/202 (4%)
Query: 9 THSSHSEQEPPPTQTVVPIQNHAPPQPPAHDPEVDI--------IINNVVCSFSVRCHLN 60
T Q P T+ Q+ + A + E D + N+V + ++ C L+
Sbjct: 22 TRQVWENQNPDGTKPATTFQSEEDIKRAAPESEKDTSATSGIVPTLQNIVATVTLGCRLD 81
Query: 61 LRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGATSEDQSKIAARRYAR 119
L+ +AL+ N EY R V M++R+P TTA I++SGK+ TGA SED SK+A+R+YAR
Sbjct: 82 LKTVALHARNAEYNPRRFAAVIMRIREPKTTALIFASGKMVVTGAKSEDDSKLASRKYAR 141
Query: 120 CLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKHRA-AEYEPELHPGVTYRITRPK 178
+Q++GF A+FT+F++ N++G+C + F IR+ + H + YEPEL PG+ YR+ +PK
Sbjct: 142 IIQKIGFAAKFTDFKIQNIVGSCDVKFPIRLEGLAFSHGTFSSYEPELFPGLIYRMVKPK 201
Query: 179 ATLKIFSTGGITVTACNDSNKI 200
L IF +G I +T +I
Sbjct: 202 IVLLIFVSGKIVLTGAKQREEI 223
>gi|365761010|gb|EHN02687.1| Spt15p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
gi|401842615|gb|EJT44751.1| SPT15-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 240
Score = 147 bits (371), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 67/157 (42%), Positives = 105/157 (66%), Gaps = 2/157 (1%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGA 104
+ N+V + ++ C L+L+ +AL+ N EY R V M++R+P TTA I++SGK+ TGA
Sbjct: 67 LQNIVATVTLGCRLDLKTVALHARNAEYNPRRFAAVIMRIREPKTTALIFASGKMVVTGA 126
Query: 105 TSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKHRA-AEYE 163
SED SK+A+R+YAR +Q++GF A+FT+F++ N++G+C + F IR+ + H + YE
Sbjct: 127 KSEDDSKLASRKYARIIQKIGFAAKFTDFKIQNIVGSCDVKFPIRLEGLAFSHGTFSSYE 186
Query: 164 PELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
PEL PG+ YR+ +PK L IF +G I +T +I
Sbjct: 187 PELFPGLIYRMVKPKIVLLIFVSGKIVLTGAKQREEI 223
>gi|395535316|ref|XP_003769674.1| PREDICTED: TATA-box-binding protein [Sarcophilus harrisii]
Length = 309
Score = 147 bits (371), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 73/186 (39%), Positives = 116/186 (62%), Gaps = 6/186 (3%)
Query: 18 PPPTQTVVPIQNHAPPQPPAHDPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYR-RE 76
P P + PI P P + + + N+V + ++ C L+L+ IAL N EY +
Sbjct: 109 PSPMTPMTPI---TPATPASESSGIVPQLQNIVSTVNLGCKLDLKTIALRARNAEYNPKR 165
Query: 77 NGMVTMKLRKPYTTASIWSSGKITCTGATSEDQSKIAARRYARCLQRLGFKARFTNFRVV 136
V M++R+P TTA I+SSGK+ CTGA SE+QS++AAR+YAR +Q+LGF A+F +F++
Sbjct: 166 FAAVIMRIREPRTTALIFSSGKMVCTGAKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQ 225
Query: 137 NVLGTCSMPFAIRI--LQFSEKHRAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTAC 194
N++G+C + F IR+ L + + ++ YEPEL PG+ YR+ +P+ L IF +G + +T
Sbjct: 226 NMVGSCDVKFPIRLEGLVLTHQQFSSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLTGA 285
Query: 195 NDSNKI 200
+I
Sbjct: 286 KVRAEI 291
>gi|321473578|gb|EFX84545.1| hypothetical protein DAPPUDRAFT_194512 [Daphnia pulex]
Length = 312
Score = 147 bits (371), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 77/206 (37%), Positives = 125/206 (60%), Gaps = 11/206 (5%)
Query: 2 TTAGMTTTHSSHSEQEPPPT-----QTVVPIQNHAPPQPPAHDPEVDIIINNVVCSFSVR 56
++A + +H HS+ P P T P+ H P + DP + + N+V + ++
Sbjct: 94 SSAAIGDSHL-HSQGTPAPAGMFGPSTPAPMTPHTPA---SADPGIVPQLQNIVSTVNLG 149
Query: 57 CHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGATSEDQSKIAAR 115
C L+L++IAL+ N EY + V M++R+P TTA I+SSGK+ CTGA SE+ S++AAR
Sbjct: 150 CKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKSEEDSRLAAR 209
Query: 116 RYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKH-RAAEYEPELHPGVTYRI 174
+YAR +Q+L F A+F +F++ N++G+C + F IR+ H + + YEPEL PG+ YR+
Sbjct: 210 KYARIVQKLNFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHSQFSSYEPELFPGLIYRM 269
Query: 175 TRPKATLKIFSTGGITVTACNDSNKI 200
+P+ L IF +G + +T +I
Sbjct: 270 VKPRIVLLIFVSGKVVLTGAKVRQEI 295
>gi|309252549|gb|ADO60139.1| TATA-binding protein, partial [Beauveria bassiana]
Length = 159
Score = 147 bits (370), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 68/155 (43%), Positives = 105/155 (67%), Gaps = 2/155 (1%)
Query: 48 NVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGATS 106
N+V + ++ C L+L+ IAL+ N EY + V M++R+P TTA I++SGK+ TGA S
Sbjct: 1 NIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGAKS 60
Query: 107 EDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKHR-AAEYEPE 165
ED SK+A+R+YAR +Q+LGF A+FT+F++ N++G+C + F IR+ + +H + YEPE
Sbjct: 61 EDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASRHHNFSSYEPE 120
Query: 166 LHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
L PG+ YR+ +PK L IF +G I +T +I
Sbjct: 121 LFPGLIYRMIKPKIVLLIFVSGKIVLTGAKVREEI 155
>gi|170044283|ref|XP_001849783.1| TATA-box-binding protein [Culex quinquefasciatus]
gi|170067801|ref|XP_001868625.1| TATA-box-binding protein [Culex quinquefasciatus]
gi|167863845|gb|EDS27228.1| TATA-box-binding protein [Culex quinquefasciatus]
gi|167867494|gb|EDS30877.1| TATA-box-binding protein [Culex quinquefasciatus]
Length = 322
Score = 147 bits (370), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 68/164 (41%), Positives = 109/164 (66%), Gaps = 2/164 (1%)
Query: 39 DPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSG 97
+P + + N+V + ++ C L+L++IAL+ N EY + V M++R+P TTA I+SSG
Sbjct: 142 EPAILPQLQNIVSTVNLSCRLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSG 201
Query: 98 KITCTGATSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKH 157
K+ CTGA SE+ S++AAR+YAR +Q+LGF A+F +F+V N++G+C + F IR+ H
Sbjct: 202 KMVCTGAKSEEDSRLAARKYARIIQKLGFTAKFLDFKVQNMVGSCDVRFPIRLEGLVLTH 261
Query: 158 -RAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
+ + YEPEL PG+ YR+ +P+ L IF +G + +T +I
Sbjct: 262 GKFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLTGAKVRQEI 305
>gi|39725630|tpg|DAA02137.1| TPA_exp: TBP-related factor 3 [Xenopus laevis]
Length = 320
Score = 147 bits (370), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 67/157 (42%), Positives = 108/157 (68%), Gaps = 2/157 (1%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGA 104
+ N+V + ++ C L+L++IAL+ N EY + V M++R+P TTA I+SSGK+ CTGA
Sbjct: 146 LQNIVSTVNLACKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 205
Query: 105 TSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKHRA-AEYE 163
SE+QS++AAR+YAR +Q+LGF A+F +F++ N++G+C + F IR+ H+ YE
Sbjct: 206 KSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVRFPIRLEGLVLTHQQFNSYE 265
Query: 164 PELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
PEL PG+ YR+ +P+ L IF +G + +T + ++I
Sbjct: 266 PELFPGLIYRMVKPRIVLLIFVSGKVVLTGAKERSEI 302
>gi|340371811|ref|XP_003384438.1| PREDICTED: TATA-box-binding protein-like [Amphimedon queenslandica]
Length = 291
Score = 147 bits (370), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 67/157 (42%), Positives = 104/157 (66%), Gaps = 2/157 (1%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGA 104
+ N+V + ++ C L+L+ IAL N EY + V M++R P TTA ++SSGK+ CTGA
Sbjct: 117 LQNIVSTVTLGCKLDLKDIALRARNAEYNPKRFAAVIMRIRDPRTTALVFSSGKMVCTGA 176
Query: 105 TSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKH-RAAEYE 163
SED S++AAR+YAR +Q+LGF A+F F++ N++G+C + F IR+ H + + YE
Sbjct: 177 KSEDFSRLAARKYARIIQKLGFPAKFLEFKIQNMVGSCDVKFPIRLEGLVVAHSQFSSYE 236
Query: 164 PELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
PEL PG+ YR+ RP+ L IF +G + +T + ++I
Sbjct: 237 PELFPGLIYRMVRPRIVLLIFVSGKVVLTGAKERSQI 273
>gi|58270288|ref|XP_572300.1| general RNA polymerase II transcription factor [Cryptococcus
neoformans var. neoformans JEC21]
gi|134117708|ref|XP_772488.1| hypothetical protein CNBL1030 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50255102|gb|EAL17841.1| hypothetical protein CNBL1030 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57228558|gb|AAW44993.1| general RNA polymerase II transcription factor, putative
[Cryptococcus neoformans var. neoformans JEC21]
Length = 232
Score = 147 bits (370), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 76/198 (38%), Positives = 118/198 (59%), Gaps = 8/198 (4%)
Query: 5 GMTTTHSSHSEQEPPPTQTVVPIQNHAPPQPPAHDPEVDIIINNVVCSFSVRCHLNLRQI 64
G+ T S PP + + + P+ A D V + N+V + ++ C L+L+ I
Sbjct: 23 GIQTLDGEGSLATRPPQKAIASV-----PEITAVDGLVPTL-QNIVATVNLDCRLDLKTI 76
Query: 65 ALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGATSEDQSKIAARRYARCLQR 123
AL+ N EY R V M++R P TTA I++SGK+ TGA SED S++A+R+YAR +Q+
Sbjct: 77 ALHARNAEYNPRRFAAVVMRIRDPRTTALIFASGKMVVTGAKSEDDSRLASRKYARIIQK 136
Query: 124 LGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKHRA-AEYEPELHPGVTYRITRPKATLK 182
LGF+A+F F++ N++G+C + F IR+ + H A + YEPEL PG+ YR+ +PK +
Sbjct: 137 LGFEAKFAEFKIQNMVGSCDVKFPIRLEGLAFSHGAFSSYEPELFPGLIYRMLKPKVVIL 196
Query: 183 IFSTGGITVTACNDSNKI 200
IF +G I +T +I
Sbjct: 197 IFVSGKIVLTGAKVREEI 214
>gi|320591748|gb|EFX04187.1| RNA polymerase 1 and 3 transcription factor complex component
[Grosmannia clavigera kw1407]
Length = 265
Score = 146 bits (369), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 66/157 (42%), Positives = 105/157 (66%), Gaps = 2/157 (1%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGA 104
+ N+V + ++ C L+L+ IAL+ N EY + V M++R+P TTA I++SGK+ TGA
Sbjct: 92 LQNIVATVNLACRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGA 151
Query: 105 TSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKHR-AAEYE 163
SED SK+A+R+YAR +Q+LGF A+FT+F++ N++G+C + F +R+ + +H + YE
Sbjct: 152 KSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPVRLEGLASRHHNFSSYE 211
Query: 164 PELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
PEL PG+ YR+ +PK L IF +G +T +I
Sbjct: 212 PELFPGLIYRMIKPKIVLLIFVSGKTVLTGAKVREEI 248
>gi|388512865|gb|AFK44494.1| unknown [Lotus japonicus]
Length = 200
Score = 146 bits (369), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 67/152 (44%), Positives = 103/152 (67%), Gaps = 2/152 (1%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGA 104
+ N+V + ++ C L L+ IAL N E+ + V M++R+P TTA I++SGK+ CTGA
Sbjct: 25 LQNIVSTVNLDCKLELKSIALQARNAEFNPKRFAAVIMRIREPKTTALIFASGKMVCTGA 84
Query: 105 TSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKHRA-AEYE 163
SE+QS++AAR+YAR +Q+LGF A+F +F++ N++G+C + F IR+ + H A + YE
Sbjct: 85 KSEEQSRLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYE 144
Query: 164 PELHPGVTYRITRPKATLKIFSTGGITVTACN 195
PEL PG+ YR+ +PK L IF +G I +T
Sbjct: 145 PELFPGLIYRMKQPKIVLLIFVSGKIVLTGAK 176
>gi|326490497|dbj|BAJ84912.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 200
Score = 146 bits (369), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 68/152 (44%), Positives = 102/152 (67%), Gaps = 2/152 (1%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGA 104
+ N+V + ++ C L+L+ IAL N EY + V M++R+P TTA I++SGK+ CTGA
Sbjct: 25 LQNIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVCTGA 84
Query: 105 TSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKHRA-AEYE 163
SE QSK+AAR+YAR +Q+LGF A+F +F++ N++ +C + F IR+ + H A + YE
Sbjct: 85 KSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVASCDVKFPIRLEGLAYSHGAFSSYE 144
Query: 164 PELHPGVTYRITRPKATLKIFSTGGITVTACN 195
PEL PG+ YR+ +PK L IF +G I +T
Sbjct: 145 PELFPGLIYRMRQPKIVLLIFVSGKIVLTGAK 176
>gi|363814312|ref|NP_001242795.1| uncharacterized protein LOC100810213 [Glycine max]
gi|255644444|gb|ACU22726.1| unknown [Glycine max]
Length = 200
Score = 146 bits (369), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 68/152 (44%), Positives = 101/152 (66%), Gaps = 2/152 (1%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGA 104
+ N+V + ++ C L+L+ IAL N EY + V M++R P TTA I++SGK+ CTGA
Sbjct: 25 LQNIVSTVNLDCKLDLKTIALQARNAEYNPKRFAAVIMRIRDPKTTALIFASGKMVCTGA 84
Query: 105 TSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKHRA-AEYE 163
SE QSK+AAR+YAR +Q+LGF +F +F++ N++G+C + F IR+ + H A + YE
Sbjct: 85 KSEQQSKLAARKYARIIQKLGFPPKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYE 144
Query: 164 PELHPGVTYRITRPKATLKIFSTGGITVTACN 195
PEL PG+ YR+ +PK L IF +G I +T
Sbjct: 145 PELFPGLIYRMKQPKIVLLIFVSGKIVLTGAK 176
>gi|123909816|sp|Q1JPY4.1|TBPL2_DANRE RecName: Full=TATA box-binding protein-like protein 2;
Short=TBP-like protein 2; AltName: Full=TATA box-binding
protein-related factor 3; Short=TBP-related factor 3
gi|94574475|gb|AAI16554.1| TATA box binding protein like 2 [Danio rerio]
gi|182890344|gb|AAI64097.1| Tbpl2 protein [Danio rerio]
Length = 312
Score = 146 bits (369), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 67/157 (42%), Positives = 107/157 (68%), Gaps = 2/157 (1%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGA 104
+ N+V + ++ C L+L+ IAL N EY + V M++R+P TTA I+SSGK+ CTGA
Sbjct: 139 LQNIVSTVNLACPLDLKSIALQARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 198
Query: 105 TSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKHRA-AEYE 163
SE+QS++AAR+YAR +Q+LGF A+F +F++ N++G+C + F IR+ H+ + YE
Sbjct: 199 KSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVCFPIRLEGLVLTHQQFSSYE 258
Query: 164 PELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
PEL PG+ YR+ +P+ L IF +G + +T + ++I
Sbjct: 259 PELFPGLIYRMVKPRIVLLIFVSGKVVLTGAKERSEI 295
>gi|218193429|gb|EEC75856.1| hypothetical protein OsI_12863 [Oryza sativa Indica Group]
Length = 190
Score = 146 bits (369), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 69/148 (46%), Positives = 102/148 (68%), Gaps = 2/148 (1%)
Query: 48 NVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGATS 106
N+V + ++ C L+L+ IAL N EY + V M++R+P TTA I++SGK+ CTGA S
Sbjct: 13 NIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVCTGAKS 72
Query: 107 EDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKHRA-AEYEPE 165
E QSK+AAR+YAR +Q+LGF A+F +F++ N++G+C + F IR+ + H A + YEPE
Sbjct: 73 EQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPE 132
Query: 166 LHPGVTYRITRPKATLKIFSTGGITVTA 193
L PG+ YR+ +PK L IF +G I +T
Sbjct: 133 LFPGLIYRMKQPKIVLLIFVSGKIVLTG 160
>gi|50308801|ref|XP_454405.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49643540|emb|CAG99492.1| KLLA0E10099p [Kluyveromyces lactis]
Length = 233
Score = 146 bits (369), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 66/157 (42%), Positives = 105/157 (66%), Gaps = 2/157 (1%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGA 104
+ N+V + ++ C L+L+ +AL+ N EY + V M++R+P TTA I++SGK+ TGA
Sbjct: 60 LQNIVATVNLDCRLDLKTVALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGA 119
Query: 105 TSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKHRA-AEYE 163
SED SK+A+R+YAR +Q++GF A+FT+F++ N++G+C + F IR+ + H + YE
Sbjct: 120 KSEDDSKLASRKYARIIQKIGFSAKFTDFKIQNIVGSCDVKFPIRLEGLAFSHGTFSSYE 179
Query: 164 PELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
PEL PG+ YR+ +PK L IF +G I +T +I
Sbjct: 180 PELFPGLIYRMVKPKIVLLIFVSGKIVLTGAKQREEI 216
>gi|417882|sp|Q02879.1|TBP2_WHEAT RecName: Full=TATA-box-binding protein 2; AltName: Full=TATA
sequence-binding protein 2; Short=TBP-2; AltName:
Full=TATA-binding factor 2; AltName: Full=TATA-box
factor 2; AltName: Full=Transcription initiation factor
TFIID TBP-2 subunit
gi|21877|emb|CAA79268.1| DNA binding protein [Triticum aestivum]
gi|170778|gb|AAA34307.1| DNA-binding protein [Triticum aestivum]
Length = 201
Score = 146 bits (369), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 68/152 (44%), Positives = 102/152 (67%), Gaps = 2/152 (1%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGA 104
+ N+V + ++ C L+L+ IAL N EY + V M++R+P TTA I++SGK+ CTGA
Sbjct: 26 LQNIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVCTGA 85
Query: 105 TSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKHRA-AEYE 163
SE QSK+AAR+YAR +Q+LGF A+F +F++ N++ +C + F IR+ + H A + YE
Sbjct: 86 KSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVASCDVKFPIRLEGLAYSHGAFSSYE 145
Query: 164 PELHPGVTYRITRPKATLKIFSTGGITVTACN 195
PEL PG+ YR+ +PK L IF +G I +T
Sbjct: 146 PELFPGLIYRMRQPKIVLLIFVSGKIVLTGAK 177
>gi|344228428|gb|EGV60314.1| TBP-domain-containing protein [Candida tenuis ATCC 10573]
Length = 237
Score = 146 bits (369), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 67/157 (42%), Positives = 105/157 (66%), Gaps = 2/157 (1%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGA 104
+ N+V + ++ C L+L+ IAL+ N EY + V M++R+P TTA I++SGK+ TGA
Sbjct: 64 LQNIVATVNLDCKLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGA 123
Query: 105 TSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKHRA-AEYE 163
SE+ SK+A+R+YAR +Q+LGF A+FT+F++ N++G+C + F IR+ + H + YE
Sbjct: 124 KSENDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDVKFPIRLEGLAFSHGTFSSYE 183
Query: 164 PELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
PEL PG+ YR+ +PK L IF +G I +T +I
Sbjct: 184 PELFPGLIYRMVKPKIVLLIFVSGKIVLTGAKQREEI 220
>gi|47550887|ref|NP_999961.1| TATA box-binding protein-like protein 2 [Danio rerio]
gi|32765839|gb|AAP87373.1| TATA-binding protein 2 [Danio rerio]
Length = 312
Score = 146 bits (369), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 67/157 (42%), Positives = 107/157 (68%), Gaps = 2/157 (1%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGA 104
+ N+V + ++ C L+L+ IAL N EY + V M++R+P TTA I+SSGK+ CTGA
Sbjct: 139 LQNIVSTVNLACPLDLKSIALQARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 198
Query: 105 TSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKHRA-AEYE 163
SE+QS++AAR+YAR +Q+LGF A+F +F++ N++G+C + F IR+ H+ + YE
Sbjct: 199 KSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVCFPIRLEGLVLTHQQFSSYE 258
Query: 164 PELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
PEL PG+ YR+ +P+ L IF +G + +T + ++I
Sbjct: 259 PELFPGLIYRMVKPRIVLLIFVSGKVVLTGAKERSEI 295
>gi|48374976|gb|AAT42173.1| TATA sequence-binding protein 2 (TBP-2) [Zea mays]
gi|413933541|gb|AFW68092.1| TATA-binding protein2 [Zea mays]
Length = 392
Score = 146 bits (369), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 69/150 (46%), Positives = 102/150 (68%), Gaps = 2/150 (1%)
Query: 48 NVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGATS 106
N+V + ++ C L+L+ IAL N EY + V M++R+P TTA I++SGK+ CTGA S
Sbjct: 174 NIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVCTGAKS 233
Query: 107 EDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKHRA-AEYEPE 165
E QSK+AAR+YAR +Q+LGF A+F +F++ N++G+C + F IR+ + H A + YEPE
Sbjct: 234 EQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPE 293
Query: 166 LHPGVTYRITRPKATLKIFSTGGITVTACN 195
L PG+ YR+ +PK L IF +G I +T
Sbjct: 294 LFPGLIYRMKQPKIVLLIFVSGKIVLTGAK 323
>gi|322698718|gb|EFY90486.1| TATA binding protein [Metarhizium acridum CQMa 102]
Length = 260
Score = 146 bits (368), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 68/164 (41%), Positives = 106/164 (64%), Gaps = 9/164 (5%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYR--------RENGMVTMKLRKPYTTASIWSSG 97
+ N+V + ++ C L+L+ IAL+ N EY + V M++R+P TTA I++SG
Sbjct: 80 LQNIVATVNLDCRLDLKTIALHARNAEYNPKMLTFDPKRFAAVIMRIREPKTTALIFASG 139
Query: 98 KITCTGATSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEK- 156
K+ TGA SED SK+A+R+YAR +Q+LGF A+FT+F++ N++G+C + F IR+ + +
Sbjct: 140 KMVVTGAKSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASRH 199
Query: 157 HRAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
H + YEPEL PG+ YR+ +PK L IF +G I +T +I
Sbjct: 200 HNFSSYEPELFPGLIYRMIKPKIVLLIFVSGKIVLTGAKVREEI 243
>gi|403305888|ref|XP_003943481.1| PREDICTED: TATA-box-binding protein [Saimiri boliviensis
boliviensis]
Length = 326
Score = 146 bits (368), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 71/179 (39%), Positives = 112/179 (62%), Gaps = 2/179 (1%)
Query: 24 VVPIQNHAPPQPPAHDPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTM 82
V P+ P P + + + N+V + ++ C L+L+ IAL N EY + V M
Sbjct: 130 VTPMTPITPATPASESSGIVPQLQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIM 189
Query: 83 KLRKPYTTASIWSSGKITCTGATSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTC 142
++R+P TTA I+SSGK+ CTGA SE+QS++AAR+YAR +Q+LGF A+F +F++ N++G+C
Sbjct: 190 RIREPRTTALIFSSGKMVCTGAKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSC 249
Query: 143 SMPFAIRILQFSEKHRA-AEYEPELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
+ F IR+ H+ + YEPEL PG+ YR+ +P+ L IF +G + +T +I
Sbjct: 250 DVKFPIRLEGLVLTHQQFSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRAEI 308
>gi|388580273|gb|EIM20589.1| TBP-domain-containing protein [Wallemia sebi CBS 633.66]
Length = 238
Score = 146 bits (368), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 77/200 (38%), Positives = 116/200 (58%), Gaps = 16/200 (8%)
Query: 16 QEPPPTQTVVPIQNHAPPQPPA------------HDPEVDIIINNVVCSFSVRCHLNLRQ 63
Q P P P PP P A H + + N+V + ++ C L+L+
Sbjct: 23 QRPQPQAAPTPQPFAVPPTPQAVQTPSHTDTGFTHSAGIVPTLQNIVATVNLDCRLDLKT 82
Query: 64 IALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGATSEDQSKIAARRYARCLQ 122
IAL+ N EY + V M++R P TTA I++SGK+ TGA SED SK+A+R+YAR +Q
Sbjct: 83 IALHARNAEYNPKRFAAVIMRIRDPKTTALIFASGKMVVTGAKSEDDSKLASRKYARIIQ 142
Query: 123 RLGFKARFTNFRVVNVLGTCSMPFAIRI--LQFSEKHRAAEYEPELHPGVTYRITRPKAT 180
+LGF A+F+ F++ N++G+C + F IR+ L ++ H ++ YEPEL PG+ YR+ +PK
Sbjct: 143 KLGFDAKFSEFKIQNIVGSCDVKFPIRLEGLAYTHGHFSS-YEPELFPGLIYRMVKPKVV 201
Query: 181 LKIFSTGGITVTACNDSNKI 200
L IF +G I +T +I
Sbjct: 202 LLIFVSGKIVLTGAKVREEI 221
>gi|168003287|ref|XP_001754344.1| TATA-box binding protein, component of TFIID and TFIIIB
[Physcomitrella patens subsp. patens]
gi|162694446|gb|EDQ80794.1| TATA-box binding protein, component of TFIID and TFIIIB
[Physcomitrella patens subsp. patens]
Length = 214
Score = 146 bits (368), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 70/158 (44%), Positives = 108/158 (68%), Gaps = 4/158 (2%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGA 104
+ N+V + ++ C L L+ IAL+ N EY + V M++R+P TTA I++SGK+ CTGA
Sbjct: 25 LQNIVSTVNMDCRLELKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVCTGA 84
Query: 105 TSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRI--LQFSEKHRAAEY 162
SE QSK+AAR+YAR +Q+LGF A+F +F++ N++G+C + F IR+ L ++ H ++ Y
Sbjct: 85 KSEQQSKLAARKYARIIQKLGFPAQFKDFKIQNIVGSCDVKFPIRLEGLAYAHGHFSS-Y 143
Query: 163 EPELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
EPEL PG+ YR+ +PK L IF +G I +T ++I
Sbjct: 144 EPELFPGLIYRMKQPKIVLLIFVSGKIVLTGAKVRDEI 181
>gi|41056135|ref|NP_956390.1| TATA-box-binding protein [Danio rerio]
gi|82187626|sp|Q7SXL3.1|TBP_DANRE RecName: Full=TATA-box-binding protein; Short=zTBP; AltName:
Full=TATA sequence-binding protein; AltName:
Full=TATA-binding factor; AltName: Full=TATA-box factor;
Short=zfTBF; AltName: Full=Transcription initiation
factor TFIID TBP subunit
gi|33416871|gb|AAH55549.1| TATA box binding protein [Danio rerio]
gi|37727187|gb|AAO34524.1| TATA-binding protein [Danio rerio]
gi|41351472|gb|AAH65860.1| TATA box binding protein [Danio rerio]
Length = 302
Score = 146 bits (368), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 71/182 (39%), Positives = 113/182 (62%), Gaps = 2/182 (1%)
Query: 21 TQTVVPIQNHAPPQPPAHDPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGM 79
T + P+ P P + + + N+V + ++ C L+L+ IAL N EY +
Sbjct: 103 TTPLTPMTPITPATPASESSGIVPQLQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAA 162
Query: 80 VTMKLRKPYTTASIWSSGKITCTGATSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVL 139
V M++R+P TTA I+SSGK+ CTGA SE+QS++AAR+YAR +Q+LGF A+F +F++ N++
Sbjct: 163 VIMRIREPRTTALIFSSGKMVCTGAKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMV 222
Query: 140 GTCSMPFAIRILQFSEKHRA-AEYEPELHPGVTYRITRPKATLKIFSTGGITVTACNDSN 198
G+C + F IR+ H+ + YEPEL PG+ YR+ +P+ L IF +G + +T
Sbjct: 223 GSCDVKFPIRLEGLVLTHQQFSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRG 282
Query: 199 KI 200
+I
Sbjct: 283 EI 284
>gi|126282854|ref|XP_001376601.1| PREDICTED: TATA box-binding protein-like protein 2-like
[Monodelphis domestica]
Length = 342
Score = 146 bits (368), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 66/157 (42%), Positives = 108/157 (68%), Gaps = 2/157 (1%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGA 104
+ N+V + ++ C L+L++IAL+ N EY + V M++R+P TTA I+SSGK+ CTGA
Sbjct: 169 LQNIVSTVNLACKLDLKKIALHAKNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 228
Query: 105 TSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKHRA-AEYE 163
SE+ S++AAR++AR +Q+LGF ARF +F++ N++G+C + F IR+ H+ + YE
Sbjct: 229 KSEELSRLAARKFARVVQKLGFPARFLDFKIQNMVGSCDVRFPIRLESLVLTHQQFSSYE 288
Query: 164 PELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
PEL PG+ YR+ +P+ L IF +G + +T + ++I
Sbjct: 289 PELFPGLVYRMVKPRIVLLIFVSGKVVLTGAKERSEI 325
>gi|45201230|ref|NP_986800.1| AGR134Wp [Ashbya gossypii ATCC 10895]
gi|44986084|gb|AAS54624.1| AGR134Wp [Ashbya gossypii ATCC 10895]
gi|374110049|gb|AEY98954.1| FAGR134Wp [Ashbya gossypii FDAG1]
Length = 239
Score = 146 bits (368), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 66/157 (42%), Positives = 105/157 (66%), Gaps = 2/157 (1%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGA 104
+ N+V + ++ C L+L+ +AL+ N EY + V M++R+P TTA I++SGK+ TGA
Sbjct: 66 LQNIVATVNLDCRLDLKTVALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGA 125
Query: 105 TSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKHRA-AEYE 163
SED SK+A+R+YAR +Q++GF A+FT+F++ N++G+C + F IR+ + H + YE
Sbjct: 126 KSEDDSKLASRKYARIIQKIGFSAKFTDFKIQNIVGSCDVKFPIRLEGLAFSHGTFSSYE 185
Query: 164 PELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
PEL PG+ YR+ +PK L IF +G I +T +I
Sbjct: 186 PELFPGLIYRMVKPKIVLLIFVSGKIVLTGAKQREEI 222
>gi|3122948|sp|Q92146.1|TBP_TRIGA RecName: Full=TATA-box-binding protein; AltName: Full=TATA
sequence-binding protein; AltName: Full=TATA-binding
factor; AltName: Full=TATA-box factor; AltName:
Full=Transcription initiation factor TFIID TBP subunit
gi|808897|dbj|BAA06554.1| TATA-box binding protein [Trimeresurus gramineus]
gi|1483197|dbj|BAA06560.1| TATA-box binding protein [Trimeresurus gramineus]
Length = 302
Score = 146 bits (368), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 67/157 (42%), Positives = 105/157 (66%), Gaps = 2/157 (1%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGA 104
+ N+V + ++ C L+L+ IAL N EY + V M++R+P TTA I+SSGK+ CTGA
Sbjct: 128 LQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 187
Query: 105 TSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKHRA-AEYE 163
SE+QS++AAR+YAR +Q+LGF A+F +F++ N++G+C + F IR+ H+ + YE
Sbjct: 188 KSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSYE 247
Query: 164 PELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
PEL PG+ YR+ +P+ L IF +G + +T +I
Sbjct: 248 PELFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRGEI 284
>gi|3122947|sp|Q92117.1|TBP_TRIFL RecName: Full=TATA-box-binding protein; AltName: Full=TATA
sequence-binding protein; AltName: Full=TATA-binding
factor; AltName: Full=TATA-box factor; AltName:
Full=Transcription initiation factor TFIID TBP subunit
gi|1483195|dbj|BAA06555.1| TATA-box binding protein [Trimeresurus flavoviridis]
Length = 300
Score = 146 bits (368), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 67/157 (42%), Positives = 105/157 (66%), Gaps = 2/157 (1%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGA 104
+ N+V + ++ C L+L+ IAL N EY + V M++R+P TTA I+SSGK+ CTGA
Sbjct: 126 LQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 185
Query: 105 TSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKHRA-AEYE 163
SE+QS++AAR+YAR +Q+LGF A+F +F++ N++G+C + F IR+ H+ + YE
Sbjct: 186 KSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSYE 245
Query: 164 PELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
PEL PG+ YR+ +P+ L IF +G + +T +I
Sbjct: 246 PELFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRGEI 282
>gi|321264592|ref|XP_003197013.1| TATA-box binding protein (Transcription initiation factor TFIID TBP
subunit) [Cryptococcus gattii WM276]
gi|317463491|gb|ADV25226.1| TATA-box binding protein (Transcription initiation factor TFIID TBP
subunit), putative [Cryptococcus gattii WM276]
Length = 232
Score = 146 bits (368), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 73/178 (41%), Positives = 112/178 (62%), Gaps = 9/178 (5%)
Query: 32 PPQPP-AHDPEVDII------INNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMK 83
PPQ A PE+ + + N+V + ++ C L+L+ IAL+ N EY R V M+
Sbjct: 37 PPQKAVASVPEITAVDGLVPTLQNIVATVNLDCRLDLKTIALHARNAEYNPRRFAAVVMR 96
Query: 84 LRKPYTTASIWSSGKITCTGATSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCS 143
+R P TTA I++SGK+ TGA SED S++A+R+YAR +Q+LGF+A+F F++ N++G+C
Sbjct: 97 IRDPRTTALIFASGKMVVTGAKSEDDSRLASRKYARIIQKLGFEAKFAEFKIQNMVGSCD 156
Query: 144 MPFAIRILQFSEKHRA-AEYEPELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
+ F IR+ + H A + YEPEL PG+ YR+ +PK + IF +G I +T +I
Sbjct: 157 VKFPIRLEGLAFSHGAFSSYEPELFPGLIYRMLKPKVVILIFVSGKIVLTGAKVREEI 214
>gi|403216725|emb|CCK71221.1| hypothetical protein KNAG_0G01630 [Kazachstania naganishii CBS
8797]
Length = 255
Score = 146 bits (368), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 67/157 (42%), Positives = 105/157 (66%), Gaps = 2/157 (1%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGA 104
+ N+V + ++ C L+L+ +AL+ N EY R V M++R+P TTA I++SGK+ TGA
Sbjct: 82 LQNIVATVNLGCRLDLKTVALHARNAEYNPRRFAAVIMRIREPKTTALIFASGKMVVTGA 141
Query: 105 TSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKHRA-AEYE 163
SED SK+A+R+YAR +Q++GF A+FT+F++ N++G+C + F IR+ + H + YE
Sbjct: 142 KSEDDSKLASRKYARIIQKIGFAAKFTDFKIQNIVGSCDVKFPIRLEGLAFSHGTFSSYE 201
Query: 164 PELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
PEL PG+ YR+ +PK L IF +G I +T +I
Sbjct: 202 PELFPGLIYRMVKPKIVLLIFVSGKIVLTGAKQREEI 238
>gi|135634|sp|P26354.1|TBP_ACACA RecName: Full=TATA-box-binding protein; AltName: Full=TATA
sequence-binding protein; Short=TBP; AltName:
Full=TATA-binding factor; AltName: Full=TATA-box factor;
AltName: Full=Transcription initiation factor TFIID TBP
subunit
gi|5593|emb|CAA44843.1| TFIID [Acanthamoeba castellanii]
gi|155636|gb|AAA27712.1| transcription factor [Acanthamoeba castellanii]
gi|155638|gb|AAA27713.1| TFIID [Acanthamoeba castellanii]
gi|440795312|gb|ELR16441.1| TATAbox-binding protein [Acanthamoeba castellanii str. Neff]
Length = 258
Score = 146 bits (368), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 69/158 (43%), Positives = 107/158 (67%), Gaps = 4/158 (2%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGA 104
+ N+V + ++ C L+L+ IAL+ N EY + V M++R+P TTA I++SGK+ CTGA
Sbjct: 85 LQNIVSTVNLGCKLDLKNIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVCTGA 144
Query: 105 TSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRI--LQFSEKHRAAEY 162
SE+ S++AAR+YAR +Q+LGF A+F +F++ N++G+C + F IR+ L F+ H + Y
Sbjct: 145 KSEEASRLAARKYARIIQKLGFAAKFLDFKIQNIVGSCDVRFPIRLEGLAFAHNHYCS-Y 203
Query: 163 EPELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
EPEL PG+ YR+ +PK L IF +G I +T +I
Sbjct: 204 EPELFPGLIYRMVQPKIVLLIFVSGKIVLTGAKVREEI 241
>gi|291190590|ref|NP_001167145.1| TATA-box-binding protein [Salmo salar]
gi|223648344|gb|ACN10930.1| TATA-box-binding protein [Salmo salar]
Length = 299
Score = 146 bits (368), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 74/186 (39%), Positives = 113/186 (60%), Gaps = 5/186 (2%)
Query: 20 PTQTVVPIQNHAPPQPPAHDPEVDIII---NNVVCSFSVRCHLNLRQIALNGVNVEYR-R 75
P T P+ P P E I+ N+V + ++ C L+L+ IAL N EY +
Sbjct: 96 PLYTATPLTPMTPITPATPASESSGIVPQLQNIVSTVNLGCKLDLKTIALRARNAEYNPK 155
Query: 76 ENGMVTMKLRKPYTTASIWSSGKITCTGATSEDQSKIAARRYARCLQRLGFKARFTNFRV 135
V M++R+P TTA I+SSGK+ CTGA SE+QS++AAR+YAR +Q+LGF A+F +F++
Sbjct: 156 RFAAVIMRIREPRTTALIFSSGKMVCTGAKSEEQSRLAARKYARVVQKLGFPAKFLDFKI 215
Query: 136 VNVLGTCSMPFAIRILQFSEKHRA-AEYEPELHPGVTYRITRPKATLKIFSTGGITVTAC 194
N++G+C + F IR+ H+ + YEPEL PG+ YR+ +P+ L IF +G + +T
Sbjct: 216 QNMVGSCDVKFPIRLEGLVLTHQQFSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLTGA 275
Query: 195 NDSNKI 200
+I
Sbjct: 276 KVRGEI 281
>gi|392573053|gb|EIW66195.1| hypothetical protein TREMEDRAFT_41045 [Tremella mesenterica DSM
1558]
Length = 255
Score = 146 bits (368), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 70/173 (40%), Positives = 110/173 (63%), Gaps = 8/173 (4%)
Query: 36 PAHDPEVDII------INNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPY 88
P + PE+ + + N+V + ++ C L+L+ IAL+ N EY + V M++R+P
Sbjct: 62 PTNVPEITAVQGLVPTLQNIVATVNLECRLDLKTIALHARNAEYNPKRFAAVVMRIREPK 121
Query: 89 TTASIWSSGKITCTGATSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAI 148
TTA I++SGK+ TGA SED S++A+R+YAR +Q+LGF A+F F++ N++G+C + F I
Sbjct: 122 TTALIFASGKMVVTGAKSEDDSRLASRKYARIIQKLGFDAKFAEFKIQNIVGSCDVKFPI 181
Query: 149 RILQFSEKHRA-AEYEPELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
R+ + H A + YEPEL PG+ YR+ +PK L IF +G I +T +I
Sbjct: 182 RLEGLAYSHGAFSSYEPELFPGLIYRMLKPKVVLLIFVSGKIVLTGAKVREEI 234
>gi|355562211|gb|EHH18843.1| hypothetical protein EGK_15529 [Macaca mulatta]
Length = 326
Score = 146 bits (368), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 71/179 (39%), Positives = 112/179 (62%), Gaps = 2/179 (1%)
Query: 24 VVPIQNHAPPQPPAHDPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTM 82
V P+ P P + + + N+V + ++ C L+L+ IAL N EY + V M
Sbjct: 130 VTPMTPITPATPASESSGIVPQLQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIM 189
Query: 83 KLRKPYTTASIWSSGKITCTGATSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTC 142
++R+P TTA I+SSGK+ CTGA SE+QS++AAR+YAR +Q+LGF A+F +F++ N++G+C
Sbjct: 190 RIREPRTTALIFSSGKMVCTGAKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSC 249
Query: 143 SMPFAIRILQFSEKHRA-AEYEPELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
+ F IR+ H+ + YEPEL PG+ YR+ +P+ L IF +G + +T +I
Sbjct: 250 DVKFPIRLEGLVLTHQQFSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRAEI 308
>gi|109073359|ref|XP_001085368.1| PREDICTED: TATA-box-binding protein isoform 3 [Macaca mulatta]
gi|75075688|sp|Q4R4F5.1|TBP_MACFA RecName: Full=TATA-box-binding protein; AltName: Full=TATA
sequence-binding protein; AltName: Full=TATA-binding
factor; AltName: Full=TATA-box factor; AltName:
Full=Transcription initiation factor TFIID TBP subunit
gi|67968013|dbj|BAE00488.1| unnamed protein product [Macaca fascicularis]
gi|67971336|dbj|BAE02010.1| unnamed protein product [Macaca fascicularis]
gi|355749048|gb|EHH53531.1| hypothetical protein EGM_14191 [Macaca fascicularis]
Length = 326
Score = 146 bits (368), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 71/179 (39%), Positives = 112/179 (62%), Gaps = 2/179 (1%)
Query: 24 VVPIQNHAPPQPPAHDPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTM 82
V P+ P P + + + N+V + ++ C L+L+ IAL N EY + V M
Sbjct: 130 VTPMTPITPATPASESSGIVPQLQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIM 189
Query: 83 KLRKPYTTASIWSSGKITCTGATSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTC 142
++R+P TTA I+SSGK+ CTGA SE+QS++AAR+YAR +Q+LGF A+F +F++ N++G+C
Sbjct: 190 RIREPRTTALIFSSGKMVCTGAKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSC 249
Query: 143 SMPFAIRILQFSEKHRA-AEYEPELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
+ F IR+ H+ + YEPEL PG+ YR+ +P+ L IF +G + +T +I
Sbjct: 250 DVKFPIRLEGLVLTHQQFSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRAEI 308
>gi|297746507|emb|CBI16563.3| unnamed protein product [Vitis vinifera]
Length = 238
Score = 146 bits (368), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 69/152 (45%), Positives = 102/152 (67%), Gaps = 2/152 (1%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGA 104
+ N+V + ++ C L+L+ IAL N EY + V M++R P TTA I++SGK+ CTGA
Sbjct: 25 LQNIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIRDPKTTALIFASGKMVCTGA 84
Query: 105 TSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKHRA-AEYE 163
SE QSK+AAR+YAR +Q+LGF A+F +F++ N++G+C + F IR+ + H A + YE
Sbjct: 85 KSEHQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYE 144
Query: 164 PELHPGVTYRITRPKATLKIFSTGGITVTACN 195
PEL PG+ YR+ +PK L IF +G I +T
Sbjct: 145 PELFPGLIYRMKQPKIVLLIFVSGKIVLTGAK 176
>gi|327262117|ref|XP_003215872.1| PREDICTED: TATA-box-binding protein-like [Anolis carolinensis]
Length = 300
Score = 145 bits (367), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 76/197 (38%), Positives = 120/197 (60%), Gaps = 9/197 (4%)
Query: 1 MTTAGMTTTHSSHSEQEPPPTQTVVPIQNHAPPQPPAHDPEVDIIINNVVCSFSVRCHLN 60
+TTA + + S + P P + PI P P + + + N+V + ++ C L+
Sbjct: 88 LTTAPLPGSTSLY----PSPMTPMTPI---TPATPASESSGIVPQLQNIVSTVNLGCKLD 140
Query: 61 LRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGATSEDQSKIAARRYAR 119
L+ IAL N EY + V M++R+P TTA I+SSGK+ CTGA SE+QS++AAR+YAR
Sbjct: 141 LKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKSEEQSRLAARKYAR 200
Query: 120 CLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKHRA-AEYEPELHPGVTYRITRPK 178
+Q+LGF A+F +F++ N++G+C + F IR+ H+ + YEPEL PG+ YR+ +P+
Sbjct: 201 VVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSYEPELFPGLIYRMIKPR 260
Query: 179 ATLKIFSTGGITVTACN 195
L IF +G + +T
Sbjct: 261 IVLLIFVSGKVVLTGAK 277
>gi|147900802|ref|NP_001084369.1| TATA-box-binding protein [Xenopus laevis]
gi|135642|sp|P27633.1|TBP_XENLA RecName: Full=TATA-box-binding protein; AltName: Full=TATA
sequence-binding protein; AltName: Full=TATA-binding
factor; AltName: Full=TATA-box factor; AltName:
Full=Transcription initiation factor TFIID TBP subunit
gi|65149|emb|CAA46832.1| transcription factor [Xenopus laevis]
gi|76779674|gb|AAI06645.1| TFIIDtau protein [Xenopus laevis]
Length = 297
Score = 145 bits (367), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 69/173 (39%), Positives = 111/173 (64%), Gaps = 2/173 (1%)
Query: 24 VVPIQNHAPPQPPAHDPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTM 82
+ P+ +P P + + + N+V + ++ C L+L+ IAL N EY + V M
Sbjct: 101 ITPMTPISPATPASESSGIVPQLQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIM 160
Query: 83 KLRKPYTTASIWSSGKITCTGATSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTC 142
++R+P TTA I+SSGK+ CTGA SE+QS++AAR+YAR +Q+LGF A+F +F++ N++G+C
Sbjct: 161 RIREPRTTALIFSSGKMVCTGAKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSC 220
Query: 143 SMPFAIRILQFSEKHRA-AEYEPELHPGVTYRITRPKATLKIFSTGGITVTAC 194
+ F IR+ H+ + YEPEL PG+ YR+ +P+ L IF +G + +T
Sbjct: 221 DVKFPIRLEGLVLTHQQFSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLTGA 273
>gi|402225771|gb|EJU05832.1| TBP-domain-containing protein [Dacryopinax sp. DJM-731 SS1]
Length = 235
Score = 145 bits (367), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 73/178 (41%), Positives = 111/178 (62%), Gaps = 9/178 (5%)
Query: 32 PPQPPA----HDPEVDIII---NNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMK 83
P PP H VD I+ N+V + ++ C L+L+ IAL+ N EY + V M+
Sbjct: 41 PAAPPTLEQQHITAVDGIVPTLQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMR 100
Query: 84 LRKPYTTASIWSSGKITCTGATSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCS 143
+R+P TTA I++SGK+ TGA SED S++A+R+YAR +Q+LGF RF +F++ N++G+C
Sbjct: 101 IREPKTTALIFASGKMVVTGAKSEDDSRLASRKYARIVQKLGFDTRFVDFKIQNIVGSCD 160
Query: 144 MPFAIRILQFSEKH-RAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
+ F IR+ + H + + YEPEL PG+ YR+ +PK L IF +G I +T +I
Sbjct: 161 VKFPIRLEGLAYSHGQFSSYEPELFPGLIYRMLKPKVVLLIFVSGKIVLTGAKVREEI 218
>gi|217075458|gb|ACJ86089.1| unknown [Medicago truncatula]
gi|388502544|gb|AFK39338.1| unknown [Medicago truncatula]
gi|388506912|gb|AFK41522.1| unknown [Medicago truncatula]
Length = 200
Score = 145 bits (367), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 69/152 (45%), Positives = 101/152 (66%), Gaps = 2/152 (1%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGA 104
+ N+V + ++ C L L+ IAL N EY + V M++R+P TTA I++SGK+ CTGA
Sbjct: 25 LQNIVSTVNLDCKLELKSIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVCTGA 84
Query: 105 TSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKHRA-AEYE 163
SE QSK+AAR+YAR +Q+LGF A+F +F++ NV+G+C + F IR+ + H + YE
Sbjct: 85 KSEVQSKLAARKYARIIQKLGFPAKFKDFKIQNVVGSCDVKFPIRLEGLAYSHGTFSSYE 144
Query: 164 PELHPGVTYRITRPKATLKIFSTGGITVTACN 195
PEL PG+ YR+ +PK L IF +G I +T
Sbjct: 145 PELFPGLIYRMKQPKIVLLIFVSGKIVLTGAK 176
>gi|348168231|gb|AEP68366.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168233|gb|AEP68367.1| TATA-binding protein [Saccharomyces cerevisiae]
Length = 240
Score = 145 bits (367), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 66/157 (42%), Positives = 105/157 (66%), Gaps = 2/157 (1%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGA 104
+ N+V + ++ C L+L+ +AL+ N EY + V M++R+P TTA I++SGK+ TGA
Sbjct: 67 LQNIVATVTLGCRLDLKTVALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGA 126
Query: 105 TSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKHRA-AEYE 163
SED SK+A+R+YAR +Q++GF A+FT+F++ N++G+C + F IR+ + H + YE
Sbjct: 127 KSEDDSKLASRKYARIIQKIGFAAKFTDFKIQNIVGSCDVKFPIRLEGLAFSHGTFSSYE 186
Query: 164 PELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
PEL PG+ YR+ +PK L IF +G I +T +I
Sbjct: 187 PELFPGLIYRMVKPKIVLLIFVSGKIVLTGAKQREEI 223
>gi|315418834|gb|ADU15470.1| TATA box binding protein [Penaeus monodon]
Length = 300
Score = 145 bits (367), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 70/171 (40%), Positives = 110/171 (64%), Gaps = 2/171 (1%)
Query: 32 PPQPPAHDPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTT 90
P P + DP + + N+V + ++ C L L++IAL+ N EY + V M++R+P TT
Sbjct: 113 PMTPHSADPGIVPQLQNIVSTVNLSCKLELKKIALHARNAEYNPKRFAAVIMRIREPRTT 172
Query: 91 ASIWSSGKITCTGATSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRI 150
A I+SSGK+ CTGA SE S++AAR+YAR +Q+LGF A+F +F++ N++G+C + F IR+
Sbjct: 173 ALIFSSGKMVCTGAKSEQDSRLAARKYARIVQKLGFPAKFMDFKIQNMVGSCDVKFPIRL 232
Query: 151 LQFSEKH-RAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
H + + YEPEL PG+ YR+ +P+ L IF + + +T N+I
Sbjct: 233 EGLVLTHSQFSSYEPELFPGLIYRMVKPRIVLLIFVSRKVVLTGAKVRNQI 283
>gi|254586113|ref|XP_002498624.1| ZYRO0G14806p [Zygosaccharomyces rouxii]
gi|238941518|emb|CAR29691.1| ZYRO0G14806p [Zygosaccharomyces rouxii]
Length = 239
Score = 145 bits (367), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 66/157 (42%), Positives = 105/157 (66%), Gaps = 2/157 (1%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGA 104
+ N+V + ++ C L+L+ +AL+ N EY + V M++R+P TTA I++SGK+ TGA
Sbjct: 66 LQNIVATVNLGCRLDLKTVALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGA 125
Query: 105 TSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKHRA-AEYE 163
SED SK+A+R+YAR +Q++GF A+FT+F++ N++G+C + F IR+ + H + YE
Sbjct: 126 KSEDDSKLASRKYARIIQKIGFAAKFTDFKIQNIVGSCDVKFPIRLEGLAFSHGTFSSYE 185
Query: 164 PELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
PEL PG+ YR+ +PK L IF +G I +T +I
Sbjct: 186 PELFPGLIYRMVKPKIVLLIFVSGKIVLTGAKQREEI 222
>gi|172899|gb|AAA35146.1| tata-box factor protein [Saccharomyces cerevisiae]
Length = 240
Score = 145 bits (367), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 66/157 (42%), Positives = 105/157 (66%), Gaps = 2/157 (1%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGA 104
+ N+V + ++ C L+L+ +AL+ N EY + V M++R+P TTA I++SGK+ TGA
Sbjct: 67 LQNIVATVTLGCRLDLKTVALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGA 126
Query: 105 TSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKHRA-AEYE 163
SED SK+A+R+YAR +Q++GF A+FT+F++ N++G+C + F IR+ + H + YE
Sbjct: 127 KSEDDSKLASRKYARIIQKIGFAAKFTDFKIQNIVGSCDVKFPIRLEGLAFSHGTFSSYE 186
Query: 164 PELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
PEL PG+ YR+ +PK L IF +G I +T +I
Sbjct: 187 PELFPGLIYRMVKPKIVLLIFVSGKIVLTGAKQREEI 223
>gi|398364911|ref|NP_011075.3| Spt15p [Saccharomyces cerevisiae S288c]
gi|135643|sp|P13393.3|TBP_YEAST RecName: Full=TATA-box-binding protein; AltName: Full=TATA
sequence-binding protein; Short=TBP; AltName:
Full=TATA-binding factor; AltName: Full=TATA-box factor;
AltName: Full=Transcription factor D; AltName:
Full=Transcription initiation factor TFIID TBP subunit
gi|73535263|pdb|1RM1|A Chain A, Structure Of A Yeast TfiiaTBPTATA-Box Dna Complex
gi|4610|emb|CAA34751.1| unnamed protein product [Saccharomyces cerevisiae]
gi|171132|gb|AAA34458.1| TATA box factor [Saccharomyces cerevisiae]
gi|172901|gb|AAA35147.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|603388|gb|AAB64675.1| Spt15p: TATA-box binding protein tfIId [Saccharomyces cerevisiae]
gi|151944866|gb|EDN63125.1| TBP [Saccharomyces cerevisiae YJM789]
gi|190405707|gb|EDV08974.1| TATA-box binding protein [Saccharomyces cerevisiae RM11-1a]
gi|256272072|gb|EEU07084.1| Spt15p [Saccharomyces cerevisiae JAY291]
gi|259146076|emb|CAY79336.1| Spt15p [Saccharomyces cerevisiae EC1118]
gi|285811781|tpg|DAA07809.1| TPA: Spt15p [Saccharomyces cerevisiae S288c]
gi|323309314|gb|EGA62532.1| Spt15p [Saccharomyces cerevisiae FostersO]
gi|323333807|gb|EGA75198.1| Spt15p [Saccharomyces cerevisiae AWRI796]
gi|323337848|gb|EGA79088.1| Spt15p [Saccharomyces cerevisiae Vin13]
gi|323348846|gb|EGA83084.1| Spt15p [Saccharomyces cerevisiae Lalvin QA23]
gi|323355333|gb|EGA87158.1| Spt15p [Saccharomyces cerevisiae VL3]
gi|348168207|gb|AEP68354.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168209|gb|AEP68355.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168211|gb|AEP68356.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168213|gb|AEP68357.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168215|gb|AEP68358.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168217|gb|AEP68359.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168219|gb|AEP68360.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168221|gb|AEP68361.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168223|gb|AEP68362.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168225|gb|AEP68363.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168227|gb|AEP68364.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168229|gb|AEP68365.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168235|gb|AEP68368.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168237|gb|AEP68369.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168239|gb|AEP68370.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168241|gb|AEP68371.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168243|gb|AEP68372.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168245|gb|AEP68373.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168247|gb|AEP68374.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168249|gb|AEP68375.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168251|gb|AEP68376.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168253|gb|AEP68377.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168255|gb|AEP68378.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168257|gb|AEP68379.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168259|gb|AEP68380.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168261|gb|AEP68381.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168263|gb|AEP68382.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168265|gb|AEP68383.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168267|gb|AEP68384.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168269|gb|AEP68385.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168271|gb|AEP68386.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168273|gb|AEP68387.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168275|gb|AEP68388.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168277|gb|AEP68389.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168279|gb|AEP68390.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168281|gb|AEP68391.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168283|gb|AEP68392.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168285|gb|AEP68393.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168287|gb|AEP68394.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168289|gb|AEP68395.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168291|gb|AEP68396.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168293|gb|AEP68397.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168295|gb|AEP68398.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168297|gb|AEP68399.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168299|gb|AEP68400.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168301|gb|AEP68401.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168303|gb|AEP68402.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168305|gb|AEP68403.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168307|gb|AEP68404.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168309|gb|AEP68405.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168311|gb|AEP68406.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168313|gb|AEP68407.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168315|gb|AEP68408.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168317|gb|AEP68409.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168319|gb|AEP68410.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168321|gb|AEP68411.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168323|gb|AEP68412.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168325|gb|AEP68413.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168327|gb|AEP68414.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168329|gb|AEP68415.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168331|gb|AEP68416.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168333|gb|AEP68417.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168335|gb|AEP68418.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168337|gb|AEP68419.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168339|gb|AEP68420.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168343|gb|AEP68422.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168345|gb|AEP68423.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168349|gb|AEP68425.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168351|gb|AEP68426.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168353|gb|AEP68427.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168355|gb|AEP68428.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168357|gb|AEP68429.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168361|gb|AEP68431.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168363|gb|AEP68432.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168365|gb|AEP68433.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168367|gb|AEP68434.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168369|gb|AEP68435.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168371|gb|AEP68436.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|349577810|dbj|GAA22978.1| K7_Spt15p [Saccharomyces cerevisiae Kyokai no. 7]
gi|365765929|gb|EHN07432.1| Spt15p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
gi|392299852|gb|EIW10944.1| Spt15p [Saccharomyces cerevisiae CEN.PK113-7D]
gi|226502|prf||1515352A transcription initiation factor TFIID
Length = 240
Score = 145 bits (367), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 66/157 (42%), Positives = 105/157 (66%), Gaps = 2/157 (1%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGA 104
+ N+V + ++ C L+L+ +AL+ N EY + V M++R+P TTA I++SGK+ TGA
Sbjct: 67 LQNIVATVTLGCRLDLKTVALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGA 126
Query: 105 TSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKHRA-AEYE 163
SED SK+A+R+YAR +Q++GF A+FT+F++ N++G+C + F IR+ + H + YE
Sbjct: 127 KSEDDSKLASRKYARIIQKIGFAAKFTDFKIQNIVGSCDVKFPIRLEGLAFSHGTFSSYE 186
Query: 164 PELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
PEL PG+ YR+ +PK L IF +G I +T +I
Sbjct: 187 PELFPGLIYRMVKPKIVLLIFVSGKIVLTGAKQREEI 223
>gi|363753780|ref|XP_003647106.1| hypothetical protein Ecym_5549 [Eremothecium cymbalariae
DBVPG#7215]
gi|356890742|gb|AET40289.1| hypothetical protein Ecym_5549 [Eremothecium cymbalariae
DBVPG#7215]
Length = 239
Score = 145 bits (367), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 66/157 (42%), Positives = 105/157 (66%), Gaps = 2/157 (1%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGA 104
+ N+V + ++ C L+L+ +AL+ N EY + V M++R+P TTA I++SGK+ TGA
Sbjct: 66 LQNIVATVNLDCRLDLKTVALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGA 125
Query: 105 TSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKHRA-AEYE 163
SED SK+A+R+YAR +Q++GF A+FT+F++ N++G+C + F IR+ + H + YE
Sbjct: 126 KSEDDSKLASRKYARIIQKIGFSAKFTDFKIQNIVGSCDVKFPIRLEGLAFSHGTFSSYE 185
Query: 164 PELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
PEL PG+ YR+ +PK L IF +G I +T +I
Sbjct: 186 PELFPGLIYRMVKPKIVLLIFVSGKIVLTGAKQREEI 222
>gi|348168341|gb|AEP68421.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168347|gb|AEP68424.1| TATA-binding protein [Saccharomyces cerevisiae]
Length = 240
Score = 145 bits (367), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 66/157 (42%), Positives = 105/157 (66%), Gaps = 2/157 (1%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGA 104
+ N+V + ++ C L+L+ +AL+ N EY + V M++R+P TTA I++SGK+ TGA
Sbjct: 67 LQNIVATVTLGCRLDLKTVALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGA 126
Query: 105 TSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKHRA-AEYE 163
SED SK+A+R+YAR +Q++GF A+FT+F++ N++G+C + F IR+ + H + YE
Sbjct: 127 KSEDDSKLASRKYARIIQKIGFAAKFTDFKIQNIVGSCDVKFPIRLEGLAFSHGTFSSYE 186
Query: 164 PELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
PEL PG+ YR+ +PK L IF +G I +T +I
Sbjct: 187 PELFPGLIYRMVKPKIVLLIFVSGKIVLTGAKQREEI 223
>gi|402868789|ref|XP_003898470.1| PREDICTED: TATA-box-binding protein isoform 2 [Papio anubis]
Length = 325
Score = 145 bits (367), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 73/185 (39%), Positives = 114/185 (61%), Gaps = 5/185 (2%)
Query: 18 PPPTQTVVPIQNHAPPQPPAHDPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYR-RE 76
P P + PI P P + + + N+V + ++ C L+L+ IAL N EY +
Sbjct: 126 PSPLTPMTPI---TPATPASESSGIVPQLQNIVSTVNLGCKLDLKTIALRARNAEYNPKR 182
Query: 77 NGMVTMKLRKPYTTASIWSSGKITCTGATSEDQSKIAARRYARCLQRLGFKARFTNFRVV 136
V M++R+P TTA I+SSGK+ CTGA SE+QS++AAR+YAR +Q+LGF A+F +F++
Sbjct: 183 FAAVIMRIREPRTTALIFSSGKMVCTGAKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQ 242
Query: 137 NVLGTCSMPFAIRILQFSEKHRA-AEYEPELHPGVTYRITRPKATLKIFSTGGITVTACN 195
N++G+C + F IR+ H+ + YEPEL PG+ YR+ +P+ L IF +G + +T
Sbjct: 243 NMVGSCDVKFPIRLEGLVLTHQQFSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLTGAK 302
Query: 196 DSNKI 200
+I
Sbjct: 303 VRAEI 307
>gi|348168359|gb|AEP68430.1| TATA-binding protein [Saccharomyces cerevisiae]
Length = 240
Score = 145 bits (367), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 66/157 (42%), Positives = 105/157 (66%), Gaps = 2/157 (1%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGA 104
+ N+V + ++ C L+L+ +AL+ N EY + V M++R+P TTA I++SGK+ TGA
Sbjct: 67 LQNIVATVTLGCRLDLKTVALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGA 126
Query: 105 TSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKHRA-AEYE 163
SED SK+A+R+YAR +Q++GF A+FT+F++ N++G+C + F IR+ + H + YE
Sbjct: 127 KSEDDSKLASRKYARIIQKIGFAAKFTDFKIQNIVGSCDVKFPIRLEGLAFSHGTFSSYE 186
Query: 164 PELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
PEL PG+ YR+ +PK L IF +G I +T +I
Sbjct: 187 PELFPGLIYRMVKPKIVLLIFVSGKIVLTGAKQREEI 223
>gi|323305296|gb|EGA59043.1| Spt15p [Saccharomyces cerevisiae FostersB]
Length = 240
Score = 145 bits (367), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 66/157 (42%), Positives = 105/157 (66%), Gaps = 2/157 (1%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGA 104
+ N+V + ++ C L+L+ +AL+ N EY + V M++R+P TTA I++SGK+ TGA
Sbjct: 67 LQNIVATVTLGCRLDLKTVALHARNAEYNPKXFAAVIMRIREPKTTALIFASGKMVVTGA 126
Query: 105 TSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKHRA-AEYE 163
SED SK+A+R+YAR +Q++GF A+FT+F++ N++G+C + F IR+ + H + YE
Sbjct: 127 KSEDDSKLASRKYARIIQKIGFAAKFTDFKIQNIVGSCDVKFPIRLEGLAFSHGTFSSYE 186
Query: 164 PELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
PEL PG+ YR+ +PK L IF +G I +T +I
Sbjct: 187 PELFPGLIYRMVKPKIVLLIFVSGKIVLTGAKQREEI 223
>gi|410076168|ref|XP_003955666.1| hypothetical protein KAFR_0B02330 [Kazachstania africana CBS 2517]
gi|372462249|emb|CCF56531.1| hypothetical protein KAFR_0B02330 [Kazachstania africana CBS 2517]
Length = 230
Score = 145 bits (367), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 66/157 (42%), Positives = 105/157 (66%), Gaps = 2/157 (1%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGA 104
+ N+V + ++ C L+L+ +AL+ N EY + V M++R+P TTA I++SGK+ TGA
Sbjct: 57 LQNIVATVNLGCRLDLKTVALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGA 116
Query: 105 TSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKHRA-AEYE 163
SED SK+A+R+YAR +Q++GF A+FT+F++ N++G+C + F IR+ + H + YE
Sbjct: 117 KSEDDSKLASRKYARIIQKIGFAAKFTDFKIQNIVGSCDVKFPIRLEGLAFSHGTFSSYE 176
Query: 164 PELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
PEL PG+ YR+ +PK L IF +G I +T +I
Sbjct: 177 PELFPGLIYRMVKPKIVLLIFVSGKIVLTGAKQREEI 213
>gi|540195|gb|AAA79368.1| TATA binding protein [Pneumocystis wakefieldiae]
Length = 229
Score = 145 bits (367), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 68/157 (43%), Positives = 104/157 (66%), Gaps = 2/157 (1%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGA 104
+ N+V + ++ C L+L+ IAL N EY + V M++R+P TTA I++SGK+ TGA
Sbjct: 55 LQNIVATVNLDCRLDLKTIALQRRNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGA 114
Query: 105 TSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKHRA-AEYE 163
SED SK+A+R+YAR +Q+LGF A+FT+F++ N++G+C + F IR+ + H + YE
Sbjct: 115 KSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDVKFPIRLEGLAYSHGTFSSYE 174
Query: 164 PELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
PEL PG+ YR+ +PK L IF +G I +T +I
Sbjct: 175 PELFPGLIYRMVKPKIVLLIFVSGKIVLTGAKVREEI 211
>gi|193620436|ref|XP_001949590.1| PREDICTED: TATA-box-binding protein-like [Acyrthosiphon pisum]
Length = 298
Score = 145 bits (367), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 74/182 (40%), Positives = 115/182 (63%), Gaps = 8/182 (4%)
Query: 27 IQNHAPPQP-----PAH-DPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGM 79
IQN A P P PA DP + + N+V + ++ C L+L+ IAL+ N E+ +
Sbjct: 100 IQNPATPAPMTPMTPASADPGIVPQLQNIVSTVNLGCRLDLKTIALHARNAEFNPKRFAA 159
Query: 80 VTMKLRKPYTTASIWSSGKITCTGATSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVL 139
V M++R+P TTA I+SSGK+ CTGA SE+ S++AAR+YAR +Q+L F A+F +F++ N++
Sbjct: 160 VIMRIREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLSFPAKFLDFKIQNMV 219
Query: 140 GTCSMPFAIRILQFSEKH-RAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTACNDSN 198
G+C + F IR+ H + + YEPEL PG+ YR+ +P+ L IF +G + +T
Sbjct: 220 GSCDVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLTGAKVRQ 279
Query: 199 KI 200
+I
Sbjct: 280 EI 281
>gi|2052377|gb|AAB53097.1| transcription factor IID [Mus musculus domesticus]
Length = 318
Score = 145 bits (367), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 73/185 (39%), Positives = 114/185 (61%), Gaps = 5/185 (2%)
Query: 18 PPPTQTVVPIQNHAPPQPPAHDPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYR-RE 76
P P + PI P P + + + N+V + ++ C L+L+ IAL N EY +
Sbjct: 119 PSPMTPMTPI---TPATPASESSGIVPQLQNIVSTVNLGCKLDLKTIALRARNAEYNPKR 175
Query: 77 NGMVTMKLRKPYTTASIWSSGKITCTGATSEDQSKIAARRYARCLQRLGFKARFTNFRVV 136
V M++R+P TTA I+SSGK+ CTGA SE+QS++AAR+YAR +Q+LGF A+F +F++
Sbjct: 176 FAAVIMRIREPRTTALIFSSGKMVCTGAKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQ 235
Query: 137 NVLGTCSMPFAIRILQFSEKHRA-AEYEPELHPGVTYRITRPKATLKIFSTGGITVTACN 195
N++G+C + F IR+ H+ + YEPEL PG+ YR+ +P+ L IF +G + +T
Sbjct: 236 NMVGSCDVKFPIRLEGLVLTHQQFSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLTGAK 295
Query: 196 DSNKI 200
+I
Sbjct: 296 VRAEI 300
>gi|172073171|ref|NP_038712.3| TATA-box-binding protein [Mus musculus]
gi|135638|sp|P29037.1|TBP_MOUSE RecName: Full=TATA-box-binding protein; AltName: Full=TATA
sequence-binding protein; AltName: Full=TATA-binding
factor; AltName: Full=TATA-box factor; AltName:
Full=Transcription initiation factor TFIID TBP subunit
gi|220612|dbj|BAA00840.1| TFIID [Mus musculus]
gi|15215158|gb|AAH12685.1| Tbp protein [Mus musculus]
gi|39754750|gb|AAR30866.1| TATA-binding protein [Mus musculus]
gi|148688512|gb|EDL20459.1| TATA box binding protein, isoform CRA_a [Mus musculus]
gi|148688514|gb|EDL20461.1| TATA box binding protein, isoform CRA_a [Mus musculus]
Length = 316
Score = 145 bits (367), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 73/185 (39%), Positives = 114/185 (61%), Gaps = 5/185 (2%)
Query: 18 PPPTQTVVPIQNHAPPQPPAHDPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYR-RE 76
P P + PI P P + + + N+V + ++ C L+L+ IAL N EY +
Sbjct: 117 PSPMTPMTPI---TPATPASESSGIVPQLQNIVSTVNLGCKLDLKTIALRARNAEYNPKR 173
Query: 77 NGMVTMKLRKPYTTASIWSSGKITCTGATSEDQSKIAARRYARCLQRLGFKARFTNFRVV 136
V M++R+P TTA I+SSGK+ CTGA SE+QS++AAR+YAR +Q+LGF A+F +F++
Sbjct: 174 FAAVIMRIREPRTTALIFSSGKMVCTGAKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQ 233
Query: 137 NVLGTCSMPFAIRILQFSEKHRA-AEYEPELHPGVTYRITRPKATLKIFSTGGITVTACN 195
N++G+C + F IR+ H+ + YEPEL PG+ YR+ +P+ L IF +G + +T
Sbjct: 234 NMVGSCDVKFPIRLEGLVLTHQQFSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLTGAK 293
Query: 196 DSNKI 200
+I
Sbjct: 294 VRAEI 298
>gi|358060360|dbj|GAA93765.1| hypothetical protein E5Q_00411 [Mixia osmundae IAM 14324]
Length = 367
Score = 145 bits (367), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 68/158 (43%), Positives = 107/158 (67%), Gaps = 4/158 (2%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGA 104
+ N+V + ++ C L+L+ IAL+ N EY + V M++R+P TTA I++SGK+ TGA
Sbjct: 194 LQNIVATVNLECKLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGA 253
Query: 105 TSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRI--LQFSEKHRAAEY 162
SED S++A+R+YAR +Q+LGF+A+F F++ N++G+C + F IR+ L +S H ++ Y
Sbjct: 254 KSEDDSRLASRKYARIIQKLGFEAQFKEFKIQNIVGSCDVKFPIRLEGLAYSHGHFSS-Y 312
Query: 163 EPELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
EPEL PG+ YR+ +PK L IF +G I +T +I
Sbjct: 313 EPELFPGLIYRMVKPKVVLLIFVSGKIVLTGAKVREEI 350
>gi|51948368|ref|NP_001004198.1| TATA-box-binding protein [Rattus norvegicus]
gi|51858685|gb|AAH81939.1| TATA box binding protein [Rattus norvegicus]
gi|149047096|gb|EDL99816.1| TATA box binding protein, isoform CRA_a [Rattus norvegicus]
gi|149047097|gb|EDL99817.1| TATA box binding protein, isoform CRA_a [Rattus norvegicus]
Length = 318
Score = 145 bits (367), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 73/185 (39%), Positives = 114/185 (61%), Gaps = 5/185 (2%)
Query: 18 PPPTQTVVPIQNHAPPQPPAHDPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYR-RE 76
P P + PI P P + + + N+V + ++ C L+L+ IAL N EY +
Sbjct: 119 PSPMTPMTPI---TPATPASESSGIVPQLQNIVSTVNLGCKLDLKTIALRARNAEYNPKR 175
Query: 77 NGMVTMKLRKPYTTASIWSSGKITCTGATSEDQSKIAARRYARCLQRLGFKARFTNFRVV 136
V M++R+P TTA I+SSGK+ CTGA SE+QS++AAR+YAR +Q+LGF A+F +F++
Sbjct: 176 FAAVIMRIREPRTTALIFSSGKMVCTGAKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQ 235
Query: 137 NVLGTCSMPFAIRILQFSEKHRA-AEYEPELHPGVTYRITRPKATLKIFSTGGITVTACN 195
N++G+C + F IR+ H+ + YEPEL PG+ YR+ +P+ L IF +G + +T
Sbjct: 236 NMVGSCDVKFPIRLEGLVLTHQQFSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLTGAK 295
Query: 196 DSNKI 200
+I
Sbjct: 296 VRAEI 300
>gi|226088558|dbj|BAH37024.1| TATA-box binding protein [Oryzias latipes]
Length = 305
Score = 145 bits (367), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 70/173 (40%), Positives = 110/173 (63%), Gaps = 2/173 (1%)
Query: 24 VVPIQNHAPPQPPAHDPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTM 82
V P+ AP P + + + N+V + ++ C L+L+ IAL N EY + V M
Sbjct: 109 VTPMTPIAPATPASESSGIVPQLQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIM 168
Query: 83 KLRKPYTTASIWSSGKITCTGATSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTC 142
++R+P TTA I+SSGK+ CTGA SE+QS++AAR+YAR +Q+LGF A+F + ++ N++G+C
Sbjct: 169 RIREPRTTALIFSSGKMVCTGAKSEEQSRLAARKYARVVQKLGFPAKFLDLKIQNMVGSC 228
Query: 143 SMPFAIRILQFSEKHRA-AEYEPELHPGVTYRITRPKATLKIFSTGGITVTAC 194
+ F IR+ H+ + YEPEL PG+ YR+ +P+ L IF +G + +T
Sbjct: 229 DVKFPIRLEGLVLTHQQFSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLTGA 281
>gi|62528966|gb|AAX84779.1| TATA-binding protein [Hydractinia echinata]
Length = 227
Score = 145 bits (367), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 67/157 (42%), Positives = 106/157 (67%), Gaps = 2/157 (1%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGA 104
+ N+V + ++ C L+L++IA + N EY + V M++R+P TTA I+SSGK+ CTGA
Sbjct: 54 LQNIVSTVNLSCKLDLKKIASHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 113
Query: 105 TSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKH-RAAEYE 163
SE+QS++AAR+YAR +Q+LGF A+F +F++ N++G+C + F IR+ H + YE
Sbjct: 114 KSEEQSRLAARKYARVIQKLGFPAKFVDFKIQNIVGSCDVKFPIRLEGLVLAHSQFCSYE 173
Query: 164 PELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
PEL PG+ YR+ +PK L IF +G + +T ++I
Sbjct: 174 PELFPGLIYRMVKPKIVLLIFVSGKVVLTGAKVRSEI 210
>gi|494632|pdb|1TBP|A Chain A, Crystal Structure Of Yeast Tata-Binding Protein And Model
For Interaction With Dna
gi|494633|pdb|1TBP|B Chain B, Crystal Structure Of Yeast Tata-Binding Protein And Model
For Interaction With Dna
Length = 180
Score = 145 bits (367), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 66/157 (42%), Positives = 105/157 (66%), Gaps = 2/157 (1%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGA 104
+ N+V + ++ C L+L+ +AL+ N EY + V M++R+P TTA I++SGK+ TGA
Sbjct: 7 LQNIVATVTLGCRLDLKTVALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGA 66
Query: 105 TSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKHRA-AEYE 163
SED SK+A+R+YAR +Q++GF A+FT+F++ N++G+C + F IR+ + H + YE
Sbjct: 67 KSEDDSKLASRKYARIIQKIGFAAKFTDFKIQNIVGSCDVKFPIRLEGLAFSHGTFSSYE 126
Query: 164 PELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
PEL PG+ YR+ +PK L IF +G I +T +I
Sbjct: 127 PELFPGLIYRMVKPKIVLLIFVSGKIVLTGAKQREEI 163
>gi|156846828|ref|XP_001646300.1| hypothetical protein Kpol_1032p36 [Vanderwaltozyma polyspora DSM
70294]
gi|156116975|gb|EDO18442.1| hypothetical protein Kpol_1032p36 [Vanderwaltozyma polyspora DSM
70294]
Length = 251
Score = 145 bits (367), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 66/157 (42%), Positives = 105/157 (66%), Gaps = 2/157 (1%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGA 104
+ N+V + ++ C L+L+ +AL+ N EY + V M++R+P TTA I++SGK+ TGA
Sbjct: 78 LQNIVATVNLGCRLDLKTVALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGA 137
Query: 105 TSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKHRA-AEYE 163
SED SK+A+R+YAR +Q++GF A+FT+F++ N++G+C + F IR+ + H + YE
Sbjct: 138 KSEDDSKLASRKYARIIQKIGFAAKFTDFKIQNIVGSCDVKFPIRLEGLAFSHGTFSSYE 197
Query: 164 PELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
PEL PG+ YR+ +PK L IF +G I +T +I
Sbjct: 198 PELFPGLIYRMVKPKIVLLIFVSGKIVLTGAKQREEI 234
>gi|291414592|ref|XP_002723543.1| PREDICTED: TATA box binding protein [Oryctolagus cuniculus]
Length = 323
Score = 145 bits (366), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 73/185 (39%), Positives = 114/185 (61%), Gaps = 5/185 (2%)
Query: 18 PPPTQTVVPIQNHAPPQPPAHDPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYR-RE 76
P P + PI P P + + + N+V + ++ C L+L+ IAL N EY +
Sbjct: 124 PSPMTPMTPI---TPATPASESSGIVPQLQNIVSTVNLGCKLDLKTIALRARNAEYNPKR 180
Query: 77 NGMVTMKLRKPYTTASIWSSGKITCTGATSEDQSKIAARRYARCLQRLGFKARFTNFRVV 136
V M++R+P TTA I+SSGK+ CTGA SE+QS++AAR+YAR +Q+LGF A+F +F++
Sbjct: 181 FAAVIMRIREPRTTALIFSSGKMVCTGAKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQ 240
Query: 137 NVLGTCSMPFAIRILQFSEKHRA-AEYEPELHPGVTYRITRPKATLKIFSTGGITVTACN 195
N++G+C + F IR+ H+ + YEPEL PG+ YR+ +P+ L IF +G + +T
Sbjct: 241 NMVGSCDVKFPIRLEGLVLTHQQFSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLTGAK 300
Query: 196 DSNKI 200
+I
Sbjct: 301 VRAEI 305
>gi|432114953|gb|ELK36596.1| TATA-box-binding protein [Myotis davidii]
Length = 316
Score = 145 bits (366), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 73/185 (39%), Positives = 114/185 (61%), Gaps = 5/185 (2%)
Query: 18 PPPTQTVVPIQNHAPPQPPAHDPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYR-RE 76
P P + PI P P + + + N+V + ++ C L+L+ IAL N EY +
Sbjct: 117 PSPMTPMTPI---TPATPASESSGIVPQLQNIVSTVNLGCKLDLKTIALRARNAEYNPKR 173
Query: 77 NGMVTMKLRKPYTTASIWSSGKITCTGATSEDQSKIAARRYARCLQRLGFKARFTNFRVV 136
V M++R+P TTA I+SSGK+ CTGA SE+QS++AAR+YAR +Q+LGF A+F +F++
Sbjct: 174 FAAVIMRIREPRTTALIFSSGKMVCTGAKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQ 233
Query: 137 NVLGTCSMPFAIRILQFSEKHRA-AEYEPELHPGVTYRITRPKATLKIFSTGGITVTACN 195
N++G+C + F IR+ H+ + YEPEL PG+ YR+ +P+ L IF +G + +T
Sbjct: 234 NMVGSCDVKFPIRLEGLVLTHQQFSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLTGAK 293
Query: 196 DSNKI 200
+I
Sbjct: 294 VRAEI 298
>gi|148688513|gb|EDL20460.1| TATA box binding protein, isoform CRA_b [Mus musculus]
Length = 323
Score = 145 bits (366), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 73/185 (39%), Positives = 114/185 (61%), Gaps = 5/185 (2%)
Query: 18 PPPTQTVVPIQNHAPPQPPAHDPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYR-RE 76
P P + PI P P + + + N+V + ++ C L+L+ IAL N EY +
Sbjct: 124 PSPMTPMTPI---TPATPASESSGIVPQLQNIVSTVNLGCKLDLKTIALRARNAEYNPKR 180
Query: 77 NGMVTMKLRKPYTTASIWSSGKITCTGATSEDQSKIAARRYARCLQRLGFKARFTNFRVV 136
V M++R+P TTA I+SSGK+ CTGA SE+QS++AAR+YAR +Q+LGF A+F +F++
Sbjct: 181 FAAVIMRIREPRTTALIFSSGKMVCTGAKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQ 240
Query: 137 NVLGTCSMPFAIRILQFSEKHRA-AEYEPELHPGVTYRITRPKATLKIFSTGGITVTACN 195
N++G+C + F IR+ H+ + YEPEL PG+ YR+ +P+ L IF +G + +T
Sbjct: 241 NMVGSCDVKFPIRLEGLVLTHQQFSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLTGAK 300
Query: 196 DSNKI 200
+I
Sbjct: 301 VRAEI 305
>gi|126310795|ref|XP_001371815.1| PREDICTED: TATA-box-binding protein-like isoform 1 [Monodelphis
domestica]
Length = 308
Score = 145 bits (366), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 73/185 (39%), Positives = 114/185 (61%), Gaps = 5/185 (2%)
Query: 18 PPPTQTVVPIQNHAPPQPPAHDPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYR-RE 76
P P + PI P P + + + N+V + ++ C L+L+ IAL N EY +
Sbjct: 109 PSPMTPMTPI---TPATPASESSGIVPQLQNIVSTVNLGCKLDLKTIALRARNAEYNPKR 165
Query: 77 NGMVTMKLRKPYTTASIWSSGKITCTGATSEDQSKIAARRYARCLQRLGFKARFTNFRVV 136
V M++R+P TTA I+SSGK+ CTGA SE+QS++AAR+YAR +Q+LGF A+F +F++
Sbjct: 166 FAAVIMRIREPRTTALIFSSGKMVCTGAKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQ 225
Query: 137 NVLGTCSMPFAIRILQFSEKHRA-AEYEPELHPGVTYRITRPKATLKIFSTGGITVTACN 195
N++G+C + F IR+ H+ + YEPEL PG+ YR+ +P+ L IF +G + +T
Sbjct: 226 NMVGSCDVKFPIRLEGLVLTHQQFSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLTGAK 285
Query: 196 DSNKI 200
+I
Sbjct: 286 VRAEI 290
>gi|426235063|ref|XP_004011510.1| PREDICTED: TATA-box-binding protein isoform 3 [Ovis aries]
Length = 288
Score = 145 bits (366), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 73/185 (39%), Positives = 114/185 (61%), Gaps = 5/185 (2%)
Query: 18 PPPTQTVVPIQNHAPPQPPAHDPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYR-RE 76
P P + PI P P + + + N+V + ++ C L+L+ IAL N EY +
Sbjct: 89 PSPMTPMTPI---TPATPASESSGIVPQLQNIVSTVNLGCKLDLKTIALRARNAEYNPKR 145
Query: 77 NGMVTMKLRKPYTTASIWSSGKITCTGATSEDQSKIAARRYARCLQRLGFKARFTNFRVV 136
V M++R+P TTA I+SSGK+ CTGA SE+QS++AAR+YAR +Q+LGF A+F +F++
Sbjct: 146 FAAVIMRIREPRTTALIFSSGKMVCTGAKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQ 205
Query: 137 NVLGTCSMPFAIRILQFSEKHRA-AEYEPELHPGVTYRITRPKATLKIFSTGGITVTACN 195
N++G+C + F IR+ H+ + YEPEL PG+ YR+ +P+ L IF +G + +T
Sbjct: 206 NMVGSCDVKFPIRLEGLVLTHQQFSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLTGAK 265
Query: 196 DSNKI 200
+I
Sbjct: 266 VRAEI 270
>gi|297853252|ref|XP_002894507.1| hypothetical protein ARALYDRAFT_474610 [Arabidopsis lyrata subsp.
lyrata]
gi|297340349|gb|EFH70766.1| hypothetical protein ARALYDRAFT_474610 [Arabidopsis lyrata subsp.
lyrata]
Length = 200
Score = 145 bits (366), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 68/152 (44%), Positives = 101/152 (66%), Gaps = 2/152 (1%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGA 104
+ N+V + ++ C L+L+ IAL N EY + V M++R+P TTA I++SGK+ CTGA
Sbjct: 25 LQNIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVCTGA 84
Query: 105 TSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKHRA-AEYE 163
SE SK+AAR+YAR +Q+LGF A+F +F++ N++G+C + F IR+ + H A + YE
Sbjct: 85 KSEHLSKLAARKYARIVQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHSAFSSYE 144
Query: 164 PELHPGVTYRITRPKATLKIFSTGGITVTACN 195
PEL PG+ YR+ PK L IF +G I +T
Sbjct: 145 PELFPGLIYRMKLPKIVLLIFVSGKIVITGAK 176
>gi|348561403|ref|XP_003466502.1| PREDICTED: TATA-box-binding protein-like [Cavia porcellus]
Length = 321
Score = 145 bits (366), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 73/185 (39%), Positives = 114/185 (61%), Gaps = 5/185 (2%)
Query: 18 PPPTQTVVPIQNHAPPQPPAHDPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYR-RE 76
P P + PI P P + + + N+V + ++ C L+L+ IAL N EY +
Sbjct: 122 PSPMTPMTPI---TPATPASESSGIVPQLQNIVSTVNLGCKLDLKTIALRARNAEYNPKR 178
Query: 77 NGMVTMKLRKPYTTASIWSSGKITCTGATSEDQSKIAARRYARCLQRLGFKARFTNFRVV 136
V M++R+P TTA I+SSGK+ CTGA SE+QS++AAR+YAR +Q+LGF A+F +F++
Sbjct: 179 FAAVIMRIREPRTTALIFSSGKMVCTGAKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQ 238
Query: 137 NVLGTCSMPFAIRILQFSEKHRA-AEYEPELHPGVTYRITRPKATLKIFSTGGITVTACN 195
N++G+C + F IR+ H+ + YEPEL PG+ YR+ +P+ L IF +G + +T
Sbjct: 239 NMVGSCDVKFPIRLEGLVLTHQQFSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLTGAK 298
Query: 196 DSNKI 200
+I
Sbjct: 299 VRAEI 303
>gi|366987133|ref|XP_003673333.1| hypothetical protein NCAS_0A03870 [Naumovozyma castellii CBS 4309]
gi|342299196|emb|CCC66945.1| hypothetical protein NCAS_0A03870 [Naumovozyma castellii CBS 4309]
Length = 252
Score = 145 bits (366), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 66/157 (42%), Positives = 105/157 (66%), Gaps = 2/157 (1%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGA 104
+ N+V + ++ C L+L+ +AL+ N EY + V M++R+P TTA I++SGK+ TGA
Sbjct: 79 LQNIVATVNLGCRLDLKTVALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGA 138
Query: 105 TSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKHRA-AEYE 163
SED SK+A+R+YAR +Q++GF A+FT+F++ N++G+C + F IR+ + H + YE
Sbjct: 139 KSEDDSKLASRKYARIIQKIGFAAKFTDFKIQNIVGSCDVKFPIRLEGLAFSHGTFSSYE 198
Query: 164 PELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
PEL PG+ YR+ +PK L IF +G I +T +I
Sbjct: 199 PELFPGLIYRMVKPKIVLLIFVSGKIVLTGAKQREEI 235
>gi|396467023|ref|XP_003837823.1| similar to transcription initiation factor TFIID [Leptosphaeria
maculans JN3]
gi|312214387|emb|CBX94379.1| similar to transcription initiation factor TFIID [Leptosphaeria
maculans JN3]
Length = 246
Score = 145 bits (366), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 64/151 (42%), Positives = 103/151 (68%), Gaps = 2/151 (1%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGA 104
+ N+V + ++ L+L+ IAL+ N EY + V M++R+P TTA +++SGK+ TGA
Sbjct: 73 LQNIVATVNLSARLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALVFASGKMVVTGA 132
Query: 105 TSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKHRA-AEYE 163
SED S++A+R+YAR +Q+LGF A+FT+F++ N++G+C + F IR+ + +H + YE
Sbjct: 133 KSEDDSRLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASRHHTFSSYE 192
Query: 164 PELHPGVTYRITRPKATLKIFSTGGITVTAC 194
PEL PG+ YR+ +PK L IF +G I +T
Sbjct: 193 PELFPGLIYRMMKPKIVLLIFVSGKIVLTGA 223
>gi|1729911|sp|P53360.1|TBP_MESAU RecName: Full=TATA-box-binding protein; AltName: Full=TATA
sequence-binding protein; AltName: Full=TATA-binding
factor; AltName: Full=TATA-box factor; AltName:
Full=Transcription initiation factor TFIID TBP subunit
gi|493654|dbj|BAA06287.1| TBP [Mesocricetus auratus]
Length = 318
Score = 145 bits (366), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 73/185 (39%), Positives = 114/185 (61%), Gaps = 5/185 (2%)
Query: 18 PPPTQTVVPIQNHAPPQPPAHDPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYR-RE 76
P P + PI P P + + + N+V + ++ C L+L+ IAL N EY +
Sbjct: 119 PSPMTPMTPI---TPATPASESSGIVPQLQNIVSTVNLGCKLDLKTIALRARNAEYNPKR 175
Query: 77 NGMVTMKLRKPYTTASIWSSGKITCTGATSEDQSKIAARRYARCLQRLGFKARFTNFRVV 136
V M++R+P TTA I+SSGK+ CTGA SE+QS++AAR+YAR +Q+LGF A+F +F++
Sbjct: 176 FAAVIMRIREPRTTALIFSSGKMVCTGAKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQ 235
Query: 137 NVLGTCSMPFAIRILQFSEKHRA-AEYEPELHPGVTYRITRPKATLKIFSTGGITVTACN 195
N++G+C + F IR+ H+ + YEPEL PG+ YR+ +P+ L IF +G + +T
Sbjct: 236 NMVGSCDVKFPIRLEGLVLTHQQFSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLTGAK 295
Query: 196 DSNKI 200
+I
Sbjct: 296 VRAEI 300
>gi|50290217|ref|XP_447540.1| hypothetical protein [Candida glabrata CBS 138]
gi|49526850|emb|CAG60477.1| unnamed protein product [Candida glabrata]
Length = 233
Score = 145 bits (366), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 66/157 (42%), Positives = 105/157 (66%), Gaps = 2/157 (1%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGA 104
+ N+V + ++ C L+L+ +AL+ N EY + V M++R+P TTA I++SGK+ TGA
Sbjct: 60 LQNIVATVNLGCRLDLKTVALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGA 119
Query: 105 TSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKHRA-AEYE 163
SED SK+A+R+YAR +Q++GF A+FT+F++ N++G+C + F IR+ + H + YE
Sbjct: 120 KSEDDSKLASRKYARIIQKIGFAAKFTDFKIQNIVGSCDVKFPIRLEGLAFSHGTFSSYE 179
Query: 164 PELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
PEL PG+ YR+ +PK L IF +G I +T +I
Sbjct: 180 PELFPGLIYRMVKPKIVLLIFVSGKIVLTGAKQREEI 216
>gi|80474966|gb|AAI09055.1| TBP protein [Homo sapiens]
gi|190691993|gb|ACE87771.1| TATA box binding protein protein [synthetic construct]
gi|254071353|gb|ACT64436.1| TATA box binding protein protein [synthetic construct]
Length = 288
Score = 145 bits (366), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 73/185 (39%), Positives = 114/185 (61%), Gaps = 5/185 (2%)
Query: 18 PPPTQTVVPIQNHAPPQPPAHDPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYR-RE 76
P P + PI P P + + + N+V + ++ C L+L+ IAL N EY +
Sbjct: 89 PSPMTPMTPI---TPATPASESSGIVPQLQNIVSTVNLGCKLDLKTIALRARNAEYNPKR 145
Query: 77 NGMVTMKLRKPYTTASIWSSGKITCTGATSEDQSKIAARRYARCLQRLGFKARFTNFRVV 136
V M++R+P TTA I+SSGK+ CTGA SE+QS++AAR+YAR +Q+LGF A+F +F++
Sbjct: 146 FAAVIMRIREPRTTALIFSSGKMVCTGAKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQ 205
Query: 137 NVLGTCSMPFAIRILQFSEKHRA-AEYEPELHPGVTYRITRPKATLKIFSTGGITVTACN 195
N++G+C + F IR+ H+ + YEPEL PG+ YR+ +P+ L IF +G + +T
Sbjct: 206 NMVGSCDVKFPIRLEGLVLTHQQFSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLTGAK 265
Query: 196 DSNKI 200
+I
Sbjct: 266 VRAEI 270
>gi|395839043|ref|XP_003792412.1| PREDICTED: TATA-box-binding protein [Otolemur garnettii]
Length = 326
Score = 145 bits (366), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 67/157 (42%), Positives = 105/157 (66%), Gaps = 2/157 (1%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGA 104
+ N+V + ++ C L+L+ IAL N EY + V M++R+P TTA I+SSGK+ CTGA
Sbjct: 152 LQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 211
Query: 105 TSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKHRA-AEYE 163
SE+QS++AAR+YAR +Q+LGF A+F +F++ N++G+C + F IR+ H+ + YE
Sbjct: 212 KSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSYE 271
Query: 164 PELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
PEL PG+ YR+ +P+ L IF +G + +T +I
Sbjct: 272 PELFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRAEI 308
>gi|426355237|ref|XP_004045035.1| PREDICTED: TATA-box-binding protein isoform 1 [Gorilla gorilla
gorilla]
Length = 331
Score = 145 bits (366), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 73/185 (39%), Positives = 114/185 (61%), Gaps = 5/185 (2%)
Query: 18 PPPTQTVVPIQNHAPPQPPAHDPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYR-RE 76
P P + PI P P + + + N+V + ++ C L+L+ IAL N EY +
Sbjct: 132 PSPMTPMTPI---TPATPASESSGIVPQLQNIVSTVNLGCKLDLKTIALRARNAEYNPKR 188
Query: 77 NGMVTMKLRKPYTTASIWSSGKITCTGATSEDQSKIAARRYARCLQRLGFKARFTNFRVV 136
V M++R+P TTA I+SSGK+ CTGA SE+QS++AAR+YAR +Q+LGF A+F +F++
Sbjct: 189 FAAVIMRIREPRTTALIFSSGKMVCTGAKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQ 248
Query: 137 NVLGTCSMPFAIRILQFSEKHRA-AEYEPELHPGVTYRITRPKATLKIFSTGGITVTACN 195
N++G+C + F IR+ H+ + YEPEL PG+ YR+ +P+ L IF +G + +T
Sbjct: 249 NMVGSCDVKFPIRLEGLVLTHQQFSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLTGAK 308
Query: 196 DSNKI 200
+I
Sbjct: 309 VRAEI 313
>gi|54696180|gb|AAV38462.1| TATA box binding protein [synthetic construct]
Length = 337
Score = 145 bits (366), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 73/185 (39%), Positives = 114/185 (61%), Gaps = 5/185 (2%)
Query: 18 PPPTQTVVPIQNHAPPQPPAHDPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYR-RE 76
P P + PI P P + + + N+V + ++ C L+L+ IAL N EY +
Sbjct: 137 PSPMTPMTPI---TPATPASESSGIVPQLQNIVSTVNLGCKLDLKTIALRARNAEYNPKR 193
Query: 77 NGMVTMKLRKPYTTASIWSSGKITCTGATSEDQSKIAARRYARCLQRLGFKARFTNFRVV 136
V M++R+P TTA I+SSGK+ CTGA SE+QS++AAR+YAR +Q+LGF A+F +F++
Sbjct: 194 FAAVIMRIREPRTTALIFSSGKMVCTGAKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQ 253
Query: 137 NVLGTCSMPFAIRILQFSEKHRA-AEYEPELHPGVTYRITRPKATLKIFSTGGITVTACN 195
N++G+C + F IR+ H+ + YEPEL PG+ YR+ +P+ L IF +G + +T
Sbjct: 254 NMVGSCDVKFPIRLEGLVLTHQQFSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLTGAK 313
Query: 196 DSNKI 200
+I
Sbjct: 314 VRAEI 318
>gi|80478871|gb|AAI09054.1| TATA box binding protein [Homo sapiens]
gi|82571689|gb|AAI10342.1| TATA box binding protein [Homo sapiens]
gi|119567803|gb|EAW47418.1| TATA box binding protein, isoform CRA_a [Homo sapiens]
gi|119567804|gb|EAW47419.1| TATA box binding protein, isoform CRA_a [Homo sapiens]
gi|190689691|gb|ACE86620.1| TATA box binding protein protein [synthetic construct]
gi|190691053|gb|ACE87301.1| TATA box binding protein protein [synthetic construct]
Length = 338
Score = 145 bits (366), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 73/185 (39%), Positives = 114/185 (61%), Gaps = 5/185 (2%)
Query: 18 PPPTQTVVPIQNHAPPQPPAHDPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYR-RE 76
P P + PI P P + + + N+V + ++ C L+L+ IAL N EY +
Sbjct: 139 PSPMTPMTPI---TPATPASESSGIVPQLQNIVSTVNLGCKLDLKTIALRARNAEYNPKR 195
Query: 77 NGMVTMKLRKPYTTASIWSSGKITCTGATSEDQSKIAARRYARCLQRLGFKARFTNFRVV 136
V M++R+P TTA I+SSGK+ CTGA SE+QS++AAR+YAR +Q+LGF A+F +F++
Sbjct: 196 FAAVIMRIREPRTTALIFSSGKMVCTGAKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQ 255
Query: 137 NVLGTCSMPFAIRILQFSEKHRA-AEYEPELHPGVTYRITRPKATLKIFSTGGITVTACN 195
N++G+C + F IR+ H+ + YEPEL PG+ YR+ +P+ L IF +G + +T
Sbjct: 256 NMVGSCDVKFPIRLEGLVLTHQQFSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLTGAK 315
Query: 196 DSNKI 200
+I
Sbjct: 316 VRAEI 320
>gi|37066|emb|CAA38736.1| TFIID [Homo sapiens]
gi|227072|prf||1613451A TATA binding factor TFIID
Length = 335
Score = 145 bits (366), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 73/185 (39%), Positives = 114/185 (61%), Gaps = 5/185 (2%)
Query: 18 PPPTQTVVPIQNHAPPQPPAHDPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYR-RE 76
P P + PI P P + + + N+V + ++ C L+L+ IAL N EY +
Sbjct: 136 PSPMTPMTPI---TPATPASESSGIVPQLQNIVSTVNLGCKLDLKTIALRARNAEYNPKR 192
Query: 77 NGMVTMKLRKPYTTASIWSSGKITCTGATSEDQSKIAARRYARCLQRLGFKARFTNFRVV 136
V M++R+P TTA I+SSGK+ CTGA SE+QS++AAR+YAR +Q+LGF A+F +F++
Sbjct: 193 FAAVIMRIREPRTTALIFSSGKMVCTGAKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQ 252
Query: 137 NVLGTCSMPFAIRILQFSEKHRA-AEYEPELHPGVTYRITRPKATLKIFSTGGITVTACN 195
N++G+C + F IR+ H+ + YEPEL PG+ YR+ +P+ L IF +G + +T
Sbjct: 253 NMVGSCDVKFPIRLEGLVLTHQQFSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLTGAK 312
Query: 196 DSNKI 200
+I
Sbjct: 313 VRAEI 317
>gi|4507379|ref|NP_003185.1| TATA-box-binding protein isoform 1 [Homo sapiens]
gi|1351223|sp|P20226.2|TBP_HUMAN RecName: Full=TATA-box-binding protein; AltName: Full=TATA
sequence-binding protein; AltName: Full=TATA-binding
factor; AltName: Full=TATA-box factor; AltName:
Full=Transcription initiation factor TFIID TBP subunit
gi|339492|gb|AAA36731.1| TATA-box binding protein [Homo sapiens]
gi|48145669|emb|CAG33057.1| TBP [Homo sapiens]
Length = 339
Score = 145 bits (366), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 73/185 (39%), Positives = 114/185 (61%), Gaps = 5/185 (2%)
Query: 18 PPPTQTVVPIQNHAPPQPPAHDPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYR-RE 76
P P + PI P P + + + N+V + ++ C L+L+ IAL N EY +
Sbjct: 140 PSPMTPMTPI---TPATPASESSGIVPQLQNIVSTVNLGCKLDLKTIALRARNAEYNPKR 196
Query: 77 NGMVTMKLRKPYTTASIWSSGKITCTGATSEDQSKIAARRYARCLQRLGFKARFTNFRVV 136
V M++R+P TTA I+SSGK+ CTGA SE+QS++AAR+YAR +Q+LGF A+F +F++
Sbjct: 197 FAAVIMRIREPRTTALIFSSGKMVCTGAKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQ 256
Query: 137 NVLGTCSMPFAIRILQFSEKHRA-AEYEPELHPGVTYRITRPKATLKIFSTGGITVTACN 195
N++G+C + F IR+ H+ + YEPEL PG+ YR+ +P+ L IF +G + +T
Sbjct: 257 NMVGSCDVKFPIRLEGLVLTHQQFSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLTGAK 316
Query: 196 DSNKI 200
+I
Sbjct: 317 VRAEI 321
>gi|397502104|ref|XP_003821708.1| PREDICTED: TATA-box-binding protein isoform 1 [Pan paniscus]
Length = 332
Score = 145 bits (366), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 73/185 (39%), Positives = 114/185 (61%), Gaps = 5/185 (2%)
Query: 18 PPPTQTVVPIQNHAPPQPPAHDPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYR-RE 76
P P + PI P P + + + N+V + ++ C L+L+ IAL N EY +
Sbjct: 133 PSPMTPMTPI---TPATPASESSGIVPQLQNIVSTVNLGCKLDLKTIALRARNAEYNPKR 189
Query: 77 NGMVTMKLRKPYTTASIWSSGKITCTGATSEDQSKIAARRYARCLQRLGFKARFTNFRVV 136
V M++R+P TTA I+SSGK+ CTGA SE+QS++AAR+YAR +Q+LGF A+F +F++
Sbjct: 190 FAAVIMRIREPRTTALIFSSGKMVCTGAKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQ 249
Query: 137 NVLGTCSMPFAIRILQFSEKHRA-AEYEPELHPGVTYRITRPKATLKIFSTGGITVTACN 195
N++G+C + F IR+ H+ + YEPEL PG+ YR+ +P+ L IF +G + +T
Sbjct: 250 NMVGSCDVKFPIRLEGLVLTHQQFSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLTGAK 309
Query: 196 DSNKI 200
+I
Sbjct: 310 VRAEI 314
>gi|355723497|gb|AES07910.1| TATA-box binding protein [Mustela putorius furo]
Length = 315
Score = 145 bits (366), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 73/185 (39%), Positives = 114/185 (61%), Gaps = 5/185 (2%)
Query: 18 PPPTQTVVPIQNHAPPQPPAHDPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYR-RE 76
P P + PI P P + + + N+V + ++ C L+L+ IAL N EY +
Sbjct: 117 PSPMTPMTPI---TPATPASESSGIVPQLQNIVSTVNLGCKLDLKTIALRARNAEYNPKR 173
Query: 77 NGMVTMKLRKPYTTASIWSSGKITCTGATSEDQSKIAARRYARCLQRLGFKARFTNFRVV 136
V M++R+P TTA I+SSGK+ CTGA SE+QS++AAR+YAR +Q+LGF A+F +F++
Sbjct: 174 FAAVIMRIREPRTTALIFSSGKMVCTGAKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQ 233
Query: 137 NVLGTCSMPFAIRILQFSEKHRA-AEYEPELHPGVTYRITRPKATLKIFSTGGITVTACN 195
N++G+C + F IR+ H+ + YEPEL PG+ YR+ +P+ L IF +G + +T
Sbjct: 234 NMVGSCDVKFPIRLEGLVLTHQQFSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLTGAK 293
Query: 196 DSNKI 200
+I
Sbjct: 294 VRAEI 298
>gi|332264009|ref|XP_003281041.1| PREDICTED: TATA-box-binding protein [Nomascus leucogenys]
Length = 328
Score = 145 bits (366), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 73/185 (39%), Positives = 114/185 (61%), Gaps = 5/185 (2%)
Query: 18 PPPTQTVVPIQNHAPPQPPAHDPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYR-RE 76
P P + PI P P + + + N+V + ++ C L+L+ IAL N EY +
Sbjct: 129 PSPMTPMTPI---TPATPASESSGIVPQLQNIVSTVNLGCKLDLKTIALRARNAEYNPKR 185
Query: 77 NGMVTMKLRKPYTTASIWSSGKITCTGATSEDQSKIAARRYARCLQRLGFKARFTNFRVV 136
V M++R+P TTA I+SSGK+ CTGA SE+QS++AAR+YAR +Q+LGF A+F +F++
Sbjct: 186 FAAVIMRIREPRTTALIFSSGKMVCTGAKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQ 245
Query: 137 NVLGTCSMPFAIRILQFSEKHRA-AEYEPELHPGVTYRITRPKATLKIFSTGGITVTACN 195
N++G+C + F IR+ H+ + YEPEL PG+ YR+ +P+ L IF +G + +T
Sbjct: 246 NMVGSCDVKFPIRLEGLVLTHQQFSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLTGAK 305
Query: 196 DSNKI 200
+I
Sbjct: 306 VRAEI 310
>gi|296199650|ref|XP_002747248.1| PREDICTED: TATA-box-binding protein [Callithrix jacchus]
Length = 333
Score = 145 bits (366), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 73/185 (39%), Positives = 114/185 (61%), Gaps = 5/185 (2%)
Query: 18 PPPTQTVVPIQNHAPPQPPAHDPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYR-RE 76
P P + PI P P + + + N+V + ++ C L+L+ IAL N EY +
Sbjct: 134 PSPMTPMTPI---TPATPASESSGIVPQLQNIVSTVNLGCKLDLKTIALRARNAEYNPKR 190
Query: 77 NGMVTMKLRKPYTTASIWSSGKITCTGATSEDQSKIAARRYARCLQRLGFKARFTNFRVV 136
V M++R+P TTA I+SSGK+ CTGA SE+QS++AAR+YAR +Q+LGF A+F +F++
Sbjct: 191 FAAVIMRIREPRTTALIFSSGKMVCTGAKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQ 250
Query: 137 NVLGTCSMPFAIRILQFSEKHRA-AEYEPELHPGVTYRITRPKATLKIFSTGGITVTACN 195
N++G+C + F IR+ H+ + YEPEL PG+ YR+ +P+ L IF +G + +T
Sbjct: 251 NMVGSCDVKFPIRLEGLVLTHQQFSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLTGAK 310
Query: 196 DSNKI 200
+I
Sbjct: 311 VRAEI 315
>gi|194390034|dbj|BAG60533.1| unnamed protein product [Homo sapiens]
Length = 316
Score = 145 bits (366), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 73/185 (39%), Positives = 114/185 (61%), Gaps = 5/185 (2%)
Query: 18 PPPTQTVVPIQNHAPPQPPAHDPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYR-RE 76
P P + PI P P + + + N+V + ++ C L+L+ IAL N EY +
Sbjct: 117 PSPMTPMTPI---TPATPASESSGIVPQLQNIVSTVNLGCKLDLKTIALRARNAEYNPKR 173
Query: 77 NGMVTMKLRKPYTTASIWSSGKITCTGATSEDQSKIAARRYARCLQRLGFKARFTNFRVV 136
V M++R+P TTA I+SSGK+ CTGA SE+QS++AAR+YAR +Q+LGF A+F +F++
Sbjct: 174 FAAVIMRIREPRTTALIFSSGKMVCTGAKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQ 233
Query: 137 NVLGTCSMPFAIRILQFSEKHRA-AEYEPELHPGVTYRITRPKATLKIFSTGGITVTACN 195
N++G+C + F IR+ H+ + YEPEL PG+ YR+ +P+ L IF +G + +T
Sbjct: 234 NMVGSCDVKFPIRLEGLVLTHQQFSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLTGAK 293
Query: 196 DSNKI 200
+I
Sbjct: 294 VRAEI 298
>gi|149743967|ref|XP_001499379.1| PREDICTED: TATA-box-binding protein-like isoform 1 [Equus caballus]
Length = 329
Score = 145 bits (366), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 73/185 (39%), Positives = 114/185 (61%), Gaps = 5/185 (2%)
Query: 18 PPPTQTVVPIQNHAPPQPPAHDPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYR-RE 76
P P + PI P P + + + N+V + ++ C L+L+ IAL N EY +
Sbjct: 130 PSPMTPMTPI---TPATPASESSGIVPQLQNIVSTVNLGCKLDLKTIALRARNAEYNPKR 186
Query: 77 NGMVTMKLRKPYTTASIWSSGKITCTGATSEDQSKIAARRYARCLQRLGFKARFTNFRVV 136
V M++R+P TTA I+SSGK+ CTGA SE+QS++AAR+YAR +Q+LGF A+F +F++
Sbjct: 187 FAAVIMRIREPRTTALIFSSGKMVCTGAKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQ 246
Query: 137 NVLGTCSMPFAIRILQFSEKHRA-AEYEPELHPGVTYRITRPKATLKIFSTGGITVTACN 195
N++G+C + F IR+ H+ + YEPEL PG+ YR+ +P+ L IF +G + +T
Sbjct: 247 NMVGSCDVKFPIRLEGLVLTHQQFSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLTGAK 306
Query: 196 DSNKI 200
+I
Sbjct: 307 VRAEI 311
>gi|45384144|ref|NP_990434.1| TATA-box-binding protein [Gallus gallus]
gi|3122919|sp|O13270.1|TBP_CHICK RecName: Full=TATA-box-binding protein; AltName: Full=TATA
sequence-binding protein; AltName: Full=TATA-binding
factor; AltName: Full=TATA-box factor; AltName:
Full=Transcription initiation factor TFIID TBP subunit
gi|2145309|dbj|BAA20296.1| TBP0 [Gallus gallus]
gi|2145310|dbj|BAA20297.1| TBP1 [Gallus gallus]
gi|2145320|dbj|BAA20298.1| TBP [Gallus gallus]
Length = 302
Score = 145 bits (366), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 73/185 (39%), Positives = 114/185 (61%), Gaps = 5/185 (2%)
Query: 18 PPPTQTVVPIQNHAPPQPPAHDPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYR-RE 76
P P + PI P P + + + N+V + ++ C L+L+ IAL N EY +
Sbjct: 103 PSPMTPMTPI---TPATPASESSGIVPQLQNIVSTVNLGCKLDLKTIALRARNAEYNPKR 159
Query: 77 NGMVTMKLRKPYTTASIWSSGKITCTGATSEDQSKIAARRYARCLQRLGFKARFTNFRVV 136
V M++R+P TTA I+SSGK+ CTGA SE+QS++AAR+YAR +Q+LGF A+F +F++
Sbjct: 160 FAAVIMRIREPRTTALIFSSGKMVCTGAKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQ 219
Query: 137 NVLGTCSMPFAIRILQFSEKHRA-AEYEPELHPGVTYRITRPKATLKIFSTGGITVTACN 195
N++G+C + F IR+ H+ + YEPEL PG+ YR+ +P+ L IF +G + +T
Sbjct: 220 NMVGSCDVKFPIRLEGLVLTHQQFSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLTGAK 279
Query: 196 DSNKI 200
+I
Sbjct: 280 VRAEI 284
>gi|326915583|ref|XP_003204094.1| PREDICTED: TATA-box-binding protein-like [Meleagris gallopavo]
Length = 303
Score = 145 bits (366), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 73/185 (39%), Positives = 114/185 (61%), Gaps = 5/185 (2%)
Query: 18 PPPTQTVVPIQNHAPPQPPAHDPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYR-RE 76
P P + PI P P + + + N+V + ++ C L+L+ IAL N EY +
Sbjct: 104 PSPMTPMTPI---TPATPASESSGIVPQLQNIVSTVNLGCKLDLKTIALRARNAEYNPKR 160
Query: 77 NGMVTMKLRKPYTTASIWSSGKITCTGATSEDQSKIAARRYARCLQRLGFKARFTNFRVV 136
V M++R+P TTA I+SSGK+ CTGA SE+QS++AAR+YAR +Q+LGF A+F +F++
Sbjct: 161 FAAVIMRIREPRTTALIFSSGKMVCTGAKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQ 220
Query: 137 NVLGTCSMPFAIRILQFSEKHRA-AEYEPELHPGVTYRITRPKATLKIFSTGGITVTACN 195
N++G+C + F IR+ H+ + YEPEL PG+ YR+ +P+ L IF +G + +T
Sbjct: 221 NMVGSCDVKFPIRLEGLVLTHQQFSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLTGAK 280
Query: 196 DSNKI 200
+I
Sbjct: 281 VRAEI 285
>gi|38680348|gb|AAR26545.1| TATA-binding protein [Gallus gallus]
Length = 302
Score = 145 bits (366), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 73/185 (39%), Positives = 114/185 (61%), Gaps = 5/185 (2%)
Query: 18 PPPTQTVVPIQNHAPPQPPAHDPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYR-RE 76
P P + PI P P + + + N+V + ++ C L+L+ IAL N EY +
Sbjct: 103 PSPMTPMTPI---TPATPASESSGIVPQLQNIVSTVNLGCKLDLKTIALRARNAEYNPKR 159
Query: 77 NGMVTMKLRKPYTTASIWSSGKITCTGATSEDQSKIAARRYARCLQRLGFKARFTNFRVV 136
V M++R+P TTA I+SSGK+ CTGA SE+QS++AAR+YAR +Q+LGF A+F +F++
Sbjct: 160 FAAVIMRIREPRTTALIFSSGKMVCTGAKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQ 219
Query: 137 NVLGTCSMPFAIRILQFSEKHRA-AEYEPELHPGVTYRITRPKATLKIFSTGGITVTACN 195
N++G+C + F IR+ H+ + YEPEL PG+ YR+ +P+ L IF +G + +T
Sbjct: 220 NMVGSCDVKFPIRLEGLVLTHQQFSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLTGAK 279
Query: 196 DSNKI 200
+I
Sbjct: 280 VRAEI 284
>gi|426355239|ref|XP_004045036.1| PREDICTED: TATA-box-binding protein isoform 2 [Gorilla gorilla
gorilla]
Length = 311
Score = 145 bits (366), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 73/185 (39%), Positives = 114/185 (61%), Gaps = 5/185 (2%)
Query: 18 PPPTQTVVPIQNHAPPQPPAHDPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYR-RE 76
P P + PI P P + + + N+V + ++ C L+L+ IAL N EY +
Sbjct: 112 PSPMTPMTPI---TPATPASESSGIVPQLQNIVSTVNLGCKLDLKTIALRARNAEYNPKR 168
Query: 77 NGMVTMKLRKPYTTASIWSSGKITCTGATSEDQSKIAARRYARCLQRLGFKARFTNFRVV 136
V M++R+P TTA I+SSGK+ CTGA SE+QS++AAR+YAR +Q+LGF A+F +F++
Sbjct: 169 FAAVIMRIREPRTTALIFSSGKMVCTGAKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQ 228
Query: 137 NVLGTCSMPFAIRILQFSEKHRA-AEYEPELHPGVTYRITRPKATLKIFSTGGITVTACN 195
N++G+C + F IR+ H+ + YEPEL PG+ YR+ +P+ L IF +G + +T
Sbjct: 229 NMVGSCDVKFPIRLEGLVLTHQQFSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLTGAK 288
Query: 196 DSNKI 200
+I
Sbjct: 289 VRAEI 293
>gi|29477183|gb|AAH50136.1| Tbp protein [Mus musculus]
Length = 316
Score = 145 bits (366), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 73/185 (39%), Positives = 114/185 (61%), Gaps = 5/185 (2%)
Query: 18 PPPTQTVVPIQNHAPPQPPAHDPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYR-RE 76
P P + PI P P + + + N+V + ++ C L+L+ IAL N EY +
Sbjct: 117 PSPMTPMTPI---TPATPASESSGIVPRLQNIVSTVNLGCKLDLKTIALRARNAEYNPKR 173
Query: 77 NGMVTMKLRKPYTTASIWSSGKITCTGATSEDQSKIAARRYARCLQRLGFKARFTNFRVV 136
V M++R+P TTA I+SSGK+ CTGA SE+QS++AAR+YAR +Q+LGF A+F +F++
Sbjct: 174 FAAVIMRIREPRTTALIFSSGKMVCTGAKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQ 233
Query: 137 NVLGTCSMPFAIRILQFSEKHRA-AEYEPELHPGVTYRITRPKATLKIFSTGGITVTACN 195
N++G+C + F IR+ H+ + YEPEL PG+ YR+ +P+ L IF +G + +T
Sbjct: 234 NMVGSCDVKFPIRLEGLVLTHQQFSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLTGAK 293
Query: 196 DSNKI 200
+I
Sbjct: 294 VRAEI 298
>gi|999660|pdb|1YTB|A Chain A, Crystal Structure Of A Yeast TbpTATA-Box Complex
gi|999661|pdb|1YTB|B Chain B, Crystal Structure Of A Yeast TbpTATA-Box Complex
gi|1633307|pdb|1YTF|A Chain A, Yeast TfiiaTBPDNA COMPLEX
gi|5822424|pdb|1TBA|B Chain B, Solution Structure Of A Tbp-Tafii230 Complex: Protein
Mimicry Of The Minor Groove Surface Of The Tata Box
Unwound By Tbp, Nmr, 25 Structures
gi|29726664|pdb|1NGM|A Chain A, Crystal Structure Of A Yeast Brf1-Tbp-Dna Ternary Complex
gi|29726668|pdb|1NGM|E Chain E, Crystal Structure Of A Yeast Brf1-Tbp-Dna Ternary Complex
gi|29726672|pdb|1NGM|I Chain I, Crystal Structure Of A Yeast Brf1-Tbp-Dna Ternary Complex
gi|29726676|pdb|1NGM|M Chain M, Crystal Structure Of A Yeast Brf1-Tbp-Dna Ternary Complex
gi|38492530|pdb|1NH2|A Chain A, Crystal Structure Of A Yeast TfiiaTBPDNA COMPLEX
Length = 180
Score = 145 bits (366), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 66/157 (42%), Positives = 105/157 (66%), Gaps = 2/157 (1%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGA 104
+ N+V + ++ C L+L+ +AL+ N EY + V M++R+P TTA I++SGK+ TGA
Sbjct: 7 LQNIVATVTLGCRLDLKTVALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGA 66
Query: 105 TSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKHRA-AEYE 163
SED SK+A+R+YAR +Q++GF A+FT+F++ N++G+C + F IR+ + H + YE
Sbjct: 67 KSEDDSKLASRKYARIIQKIGFAAKFTDFKIQNIVGSCDVKFPIRLEGLAFSHGTFSSYE 126
Query: 164 PELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
PEL PG+ YR+ +PK L IF +G I +T +I
Sbjct: 127 PELFPGLIYRMVKPKIVLLIFVSGKIVLTGAKQREEI 163
>gi|397502106|ref|XP_003821709.1| PREDICTED: TATA-box-binding protein isoform 2 [Pan paniscus]
Length = 312
Score = 145 bits (366), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 73/185 (39%), Positives = 114/185 (61%), Gaps = 5/185 (2%)
Query: 18 PPPTQTVVPIQNHAPPQPPAHDPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYR-RE 76
P P + PI P P + + + N+V + ++ C L+L+ IAL N EY +
Sbjct: 113 PSPMTPMTPI---TPATPASESSGIVPQLQNIVSTVNLGCKLDLKTIALRARNAEYNPKR 169
Query: 77 NGMVTMKLRKPYTTASIWSSGKITCTGATSEDQSKIAARRYARCLQRLGFKARFTNFRVV 136
V M++R+P TTA I+SSGK+ CTGA SE+QS++AAR+YAR +Q+LGF A+F +F++
Sbjct: 170 FAAVIMRIREPRTTALIFSSGKMVCTGAKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQ 229
Query: 137 NVLGTCSMPFAIRILQFSEKHRA-AEYEPELHPGVTYRITRPKATLKIFSTGGITVTACN 195
N++G+C + F IR+ H+ + YEPEL PG+ YR+ +P+ L IF +G + +T
Sbjct: 230 NMVGSCDVKFPIRLEGLVLTHQQFSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLTGAK 289
Query: 196 DSNKI 200
+I
Sbjct: 290 VRAEI 294
>gi|285026520|ref|NP_001165556.1| TATA-box-binding protein isoform 2 [Homo sapiens]
Length = 319
Score = 145 bits (366), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 73/185 (39%), Positives = 114/185 (61%), Gaps = 5/185 (2%)
Query: 18 PPPTQTVVPIQNHAPPQPPAHDPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYR-RE 76
P P + PI P P + + + N+V + ++ C L+L+ IAL N EY +
Sbjct: 120 PSPMTPMTPI---TPATPASESSGIVPQLQNIVSTVNLGCKLDLKTIALRARNAEYNPKR 176
Query: 77 NGMVTMKLRKPYTTASIWSSGKITCTGATSEDQSKIAARRYARCLQRLGFKARFTNFRVV 136
V M++R+P TTA I+SSGK+ CTGA SE+QS++AAR+YAR +Q+LGF A+F +F++
Sbjct: 177 FAAVIMRIREPRTTALIFSSGKMVCTGAKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQ 236
Query: 137 NVLGTCSMPFAIRILQFSEKHRA-AEYEPELHPGVTYRITRPKATLKIFSTGGITVTACN 195
N++G+C + F IR+ H+ + YEPEL PG+ YR+ +P+ L IF +G + +T
Sbjct: 237 NMVGSCDVKFPIRLEGLVLTHQQFSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLTGAK 296
Query: 196 DSNKI 200
+I
Sbjct: 297 VRAEI 301
>gi|281351746|gb|EFB27330.1| hypothetical protein PANDA_014728 [Ailuropoda melanoleuca]
Length = 308
Score = 145 bits (366), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 73/185 (39%), Positives = 114/185 (61%), Gaps = 5/185 (2%)
Query: 18 PPPTQTVVPIQNHAPPQPPAHDPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYR-RE 76
P P + PI P P + + + N+V + ++ C L+L+ IAL N EY +
Sbjct: 109 PSPMTPMTPI---TPATPASESSGIVPQLQNIVSTVNLGCKLDLKTIALRARNAEYNPKR 165
Query: 77 NGMVTMKLRKPYTTASIWSSGKITCTGATSEDQSKIAARRYARCLQRLGFKARFTNFRVV 136
V M++R+P TTA I+SSGK+ CTGA SE+QS++AAR+YAR +Q+LGF A+F +F++
Sbjct: 166 FAAVIMRIREPRTTALIFSSGKMVCTGAKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQ 225
Query: 137 NVLGTCSMPFAIRILQFSEKHRA-AEYEPELHPGVTYRITRPKATLKIFSTGGITVTACN 195
N++G+C + F IR+ H+ + YEPEL PG+ YR+ +P+ L IF +G + +T
Sbjct: 226 NMVGSCDVKFPIRLEGLVLTHQQFSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLTGAK 285
Query: 196 DSNKI 200
+I
Sbjct: 286 VRAEI 290
>gi|440894479|gb|ELR46921.1| TATA-box-binding protein [Bos grunniens mutus]
Length = 312
Score = 145 bits (366), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 67/157 (42%), Positives = 105/157 (66%), Gaps = 2/157 (1%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGA 104
+ N+V + ++ C L+L+ IAL N EY + V M++R+P TTA I+SSGK+ CTGA
Sbjct: 138 LQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 197
Query: 105 TSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKHRA-AEYE 163
SE+QS++AAR+YAR +Q+LGF A+F +F++ N++G+C + F IR+ H+ + YE
Sbjct: 198 KSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSYE 257
Query: 164 PELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
PEL PG+ YR+ +P+ L IF +G + +T +I
Sbjct: 258 PELFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRAEI 294
>gi|402868787|ref|XP_003898469.1| PREDICTED: TATA-box-binding protein isoform 1 [Papio anubis]
Length = 335
Score = 145 bits (366), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 73/185 (39%), Positives = 114/185 (61%), Gaps = 5/185 (2%)
Query: 18 PPPTQTVVPIQNHAPPQPPAHDPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYR-RE 76
P P + PI P P + + + N+V + ++ C L+L+ IAL N EY +
Sbjct: 136 PSPLTPMTPI---TPATPASESSGIVPQLQNIVSTVNLGCKLDLKTIALRARNAEYNPKR 192
Query: 77 NGMVTMKLRKPYTTASIWSSGKITCTGATSEDQSKIAARRYARCLQRLGFKARFTNFRVV 136
V M++R+P TTA I+SSGK+ CTGA SE+QS++AAR+YAR +Q+LGF A+F +F++
Sbjct: 193 FAAVIMRIREPRTTALIFSSGKMVCTGAKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQ 252
Query: 137 NVLGTCSMPFAIRILQFSEKHRA-AEYEPELHPGVTYRITRPKATLKIFSTGGITVTACN 195
N++G+C + F IR+ H+ + YEPEL PG+ YR+ +P+ L IF +G + +T
Sbjct: 253 NMVGSCDVKFPIRLEGLVLTHQQFSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLTGAK 312
Query: 196 DSNKI 200
+I
Sbjct: 313 VRAEI 317
>gi|37726863|gb|AAO34522.1| TATA-binding protein [Ginglymostoma cirratum]
Length = 302
Score = 145 bits (366), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 75/196 (38%), Positives = 118/196 (60%), Gaps = 5/196 (2%)
Query: 7 TTTHSSHSEQEPPPTQTVVPIQNHAPPQPPAHDPEVDIIINNVVCSFSVRCHLNLRQIAL 66
TTT + P P + PI P P + + + N+V + ++ C L+L+ IAL
Sbjct: 92 TTTLPGITSHYPSPMTPMTPI---TPATPASESSGIVPQLQNIVSTVNLGCKLDLKTIAL 148
Query: 67 NGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGATSEDQSKIAARRYARCLQRLG 125
N E + + V M++R+P TTA I+SSGK+ CTGA SE+QS++AAR+YAR +Q+LG
Sbjct: 149 RARNAEKKPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKSEEQSRLAARKYARVVQKLG 208
Query: 126 FKARFTNFRVVNVLGTCSMPFAIRILQFSEKHRA-AEYEPELHPGVTYRITRPKATLKIF 184
F A+F +F++ N++G+C + F IR+ H+ + YEPEL PG+ YR+ +P+ L IF
Sbjct: 209 FPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSYEPELFPGLIYRMIKPRIVLLIF 268
Query: 185 STGGITVTACNDSNKI 200
+G + +T +I
Sbjct: 269 VSGKVVLTGAKVRAEI 284
>gi|115496234|ref|NP_001069210.1| TATA-box-binding protein [Bos taurus]
gi|119367391|sp|Q2HJ52.1|TBP_BOVIN RecName: Full=TATA-box-binding protein; AltName: Full=TATA
sequence-binding protein; AltName: Full=TATA-binding
factor; AltName: Full=TATA-box factor; AltName:
Full=Transcription initiation factor TFIID TBP subunit
gi|87578225|gb|AAI13309.1| TATA box binding protein [Bos taurus]
Length = 319
Score = 145 bits (366), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 67/157 (42%), Positives = 105/157 (66%), Gaps = 2/157 (1%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGA 104
+ N+V + ++ C L+L+ IAL N EY + V M++R+P TTA I+SSGK+ CTGA
Sbjct: 145 LQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 204
Query: 105 TSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKHRA-AEYE 163
SE+QS++AAR+YAR +Q+LGF A+F +F++ N++G+C + F IR+ H+ + YE
Sbjct: 205 KSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSYE 264
Query: 164 PELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
PEL PG+ YR+ +P+ L IF +G + +T +I
Sbjct: 265 PELFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRAEI 301
>gi|1582692|prf||2119243A TATA box-binding protein
Length = 338
Score = 145 bits (366), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 73/185 (39%), Positives = 114/185 (61%), Gaps = 5/185 (2%)
Query: 18 PPPTQTVVPIQNHAPPQPPAHDPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYR-RE 76
P P + PI P P + + + N+V + ++ C L+L+ IAL N EY +
Sbjct: 139 PSPMTPMTPI---TPATPASESSGIVPQLQNIVSTVNLGCKLDLKTIALRARNAEYNPKR 195
Query: 77 NGMVTMKLRKPYTTASIWSSGKITCTGATSEDQSKIAARRYARCLQRLGFKARFTNFRVV 136
V M++R+P TTA I+SSGK+ CTGA SE+QS++AAR+YAR +Q+LGF A+F +F++
Sbjct: 196 FAAVIMRIREPRTTALIFSSGKMVCTGAKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQ 255
Query: 137 NVLGTCSMPFAIRILQFSEKHRA-AEYEPELHPGVTYRITRPKATLKIFSTGGITVTACN 195
N++G+C + F IR+ H+ + YEPEL PG+ YR+ +P+ L IF +G + +T
Sbjct: 256 NMVGSCDVKFPIRLEGLVLTHQQFSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLTGAK 315
Query: 196 DSNKI 200
+I
Sbjct: 316 VRAEI 320
>gi|301779702|ref|XP_002925261.1| PREDICTED: TATA-box-binding protein-like [Ailuropoda melanoleuca]
Length = 324
Score = 145 bits (366), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 73/185 (39%), Positives = 114/185 (61%), Gaps = 5/185 (2%)
Query: 18 PPPTQTVVPIQNHAPPQPPAHDPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYR-RE 76
P P + PI P P + + + N+V + ++ C L+L+ IAL N EY +
Sbjct: 125 PSPMTPMTPI---TPATPASESSGIVPQLQNIVSTVNLGCKLDLKTIALRARNAEYNPKR 181
Query: 77 NGMVTMKLRKPYTTASIWSSGKITCTGATSEDQSKIAARRYARCLQRLGFKARFTNFRVV 136
V M++R+P TTA I+SSGK+ CTGA SE+QS++AAR+YAR +Q+LGF A+F +F++
Sbjct: 182 FAAVIMRIREPRTTALIFSSGKMVCTGAKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQ 241
Query: 137 NVLGTCSMPFAIRILQFSEKHRA-AEYEPELHPGVTYRITRPKATLKIFSTGGITVTACN 195
N++G+C + F IR+ H+ + YEPEL PG+ YR+ +P+ L IF +G + +T
Sbjct: 242 NMVGSCDVKFPIRLEGLVLTHQQFSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLTGAK 301
Query: 196 DSNKI 200
+I
Sbjct: 302 VRAEI 306
>gi|73973822|ref|XP_854525.1| PREDICTED: TATA-box-binding protein isoform 1 [Canis lupus
familiaris]
Length = 324
Score = 145 bits (366), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 73/185 (39%), Positives = 114/185 (61%), Gaps = 5/185 (2%)
Query: 18 PPPTQTVVPIQNHAPPQPPAHDPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYR-RE 76
P P + PI P P + + + N+V + ++ C L+L+ IAL N EY +
Sbjct: 125 PSPMTPMTPI---TPATPASESSGIVPQLQNIVSTVNLGCKLDLKTIALRARNAEYNPKR 181
Query: 77 NGMVTMKLRKPYTTASIWSSGKITCTGATSEDQSKIAARRYARCLQRLGFKARFTNFRVV 136
V M++R+P TTA I+SSGK+ CTGA SE+QS++AAR+YAR +Q+LGF A+F +F++
Sbjct: 182 FAAVIMRIREPRTTALIFSSGKMVCTGAKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQ 241
Query: 137 NVLGTCSMPFAIRILQFSEKHRA-AEYEPELHPGVTYRITRPKATLKIFSTGGITVTACN 195
N++G+C + F IR+ H+ + YEPEL PG+ YR+ +P+ L IF +G + +T
Sbjct: 242 NMVGSCDVKFPIRLEGLVLTHQQFSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLTGAK 301
Query: 196 DSNKI 200
+I
Sbjct: 302 VRAEI 306
>gi|297679683|ref|XP_002817654.1| PREDICTED: TATA-box-binding protein [Pongo abelii]
Length = 327
Score = 145 bits (366), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 73/185 (39%), Positives = 114/185 (61%), Gaps = 5/185 (2%)
Query: 18 PPPTQTVVPIQNHAPPQPPAHDPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYR-RE 76
P P + PI P P + + + N+V + ++ C L+L+ IAL N EY +
Sbjct: 128 PSPMTPMTPI---TPATPASESSGIVPQLQNIVSTVNLGCKLDLKTIALRARNAEYNPKR 184
Query: 77 NGMVTMKLRKPYTTASIWSSGKITCTGATSEDQSKIAARRYARCLQRLGFKARFTNFRVV 136
V M++R+P TTA I+SSGK+ CTGA SE+QS++AAR+YAR +Q+LGF A+F +F++
Sbjct: 185 FAAVIMRIREPRTTALIFSSGKMVCTGAKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQ 244
Query: 137 NVLGTCSMPFAIRILQFSEKHRA-AEYEPELHPGVTYRITRPKATLKIFSTGGITVTACN 195
N++G+C + F IR+ H+ + YEPEL PG+ YR+ +P+ L IF +G + +T
Sbjct: 245 NMVGSCDVKFPIRLEGLVLTHQQFSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLTGAK 304
Query: 196 DSNKI 200
+I
Sbjct: 305 VRAEI 309
>gi|345309405|ref|XP_003428833.1| PREDICTED: LOW QUALITY PROTEIN: TATA-box-binding protein-like
[Ornithorhynchus anatinus]
Length = 308
Score = 145 bits (366), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 67/157 (42%), Positives = 105/157 (66%), Gaps = 2/157 (1%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGA 104
+ N+V + ++ C L+L+ IAL N EY + V M++R+P TTA I+SSGK+ CTGA
Sbjct: 134 LQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 193
Query: 105 TSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKHRA-AEYE 163
SE+QS++AAR+YAR +Q+LGF A+F +F++ N++G+C + F IR+ H+ + YE
Sbjct: 194 KSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSYE 253
Query: 164 PELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
PEL PG+ YR+ +P+ L IF +G + +T +I
Sbjct: 254 PELFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRAEI 290
>gi|15222732|ref|NP_175948.1| TATA-box-binding protein 2 [Arabidopsis thaliana]
gi|30695955|ref|NP_849812.1| TATA-box-binding protein 2 [Arabidopsis thaliana]
gi|135627|sp|P28148.1|TBP2_ARATH RecName: Full=TATA-box-binding protein 2; AltName: Full=TATA
sequence-binding protein 2; Short=TBP-2; AltName:
Full=TATA-binding factor 2; AltName: Full=TATA-box
factor 2; AltName: Full=Transcription initiation factor
TFIID TBP-2 subunit
gi|16546|emb|CAA38742.1| transcription initiation factor II [Arabidopsis thaliana]
gi|4204264|gb|AAD10645.1| transcription initiation factor II [Arabidopsis thaliana]
gi|30102756|gb|AAP21296.1| At1g55520 [Arabidopsis thaliana]
gi|39545930|gb|AAR28028.1| TBP2 [Arabidopsis thaliana]
gi|110743161|dbj|BAE99472.1| transcription initiation factor TFIID-2 [Arabidopsis thaliana]
gi|225898024|dbj|BAH30344.1| hypothetical protein [Arabidopsis thaliana]
gi|332195136|gb|AEE33257.1| TATA-box-binding protein 2 [Arabidopsis thaliana]
gi|332195137|gb|AEE33258.1| TATA-box-binding protein 2 [Arabidopsis thaliana]
gi|227073|prf||1613452A transcription initiation factor TFIID-1
Length = 200
Score = 145 bits (366), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 68/152 (44%), Positives = 101/152 (66%), Gaps = 2/152 (1%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGA 104
+ N+V + ++ C L+L+ IAL N EY + V M++R+P TTA I++SGK+ CTGA
Sbjct: 25 LQNIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVCTGA 84
Query: 105 TSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKHRA-AEYE 163
SE SK+AAR+YAR +Q+LGF A+F +F++ N++G+C + F IR+ + H A + YE
Sbjct: 85 KSEHLSKLAARKYARIVQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHSAFSSYE 144
Query: 164 PELHPGVTYRITRPKATLKIFSTGGITVTACN 195
PEL PG+ YR+ PK L IF +G I +T
Sbjct: 145 PELFPGLIYRMKLPKIVLLIFVSGKIVITGAK 176
>gi|348534076|ref|XP_003454529.1| PREDICTED: TATA-box-binding protein-like [Oreochromis niloticus]
Length = 333
Score = 145 bits (366), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 71/182 (39%), Positives = 113/182 (62%), Gaps = 2/182 (1%)
Query: 21 TQTVVPIQNHAPPQPPAHDPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGM 79
T + P+ P P + + + N+V + ++ C L+L+ IAL N EY +
Sbjct: 134 TTPLTPMTPITPATPASETSGIVPQLQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAA 193
Query: 80 VTMKLRKPYTTASIWSSGKITCTGATSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVL 139
V M++R+P TTA I+SSGK+ CTGA SE+QS++AAR+YAR +Q+LGF A+F +F++ N++
Sbjct: 194 VIMRIREPRTTALIFSSGKMVCTGAKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMV 253
Query: 140 GTCSMPFAIRILQFSEKHRA-AEYEPELHPGVTYRITRPKATLKIFSTGGITVTACNDSN 198
G+C + F IR+ H+ + YEPEL PG+ YR+ +P+ L IF +G + +T
Sbjct: 254 GSCDVKFPIRLEGLVLTHQQFSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRG 313
Query: 199 KI 200
+I
Sbjct: 314 EI 315
>gi|444316966|ref|XP_004179140.1| hypothetical protein TBLA_0B08050 [Tetrapisispora blattae CBS 6284]
gi|387512180|emb|CCH59621.1| hypothetical protein TBLA_0B08050 [Tetrapisispora blattae CBS 6284]
Length = 242
Score = 145 bits (366), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 66/157 (42%), Positives = 105/157 (66%), Gaps = 2/157 (1%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGA 104
+ N+V + ++ C L+L+ +AL+ N EY + V M++R+P TTA I++SGK+ TGA
Sbjct: 69 LQNIVATVNLGCRLDLKTVALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGA 128
Query: 105 TSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKHRA-AEYE 163
SED SK+A+R+YAR +Q++GF A+FT+F++ N++G+C + F IR+ + H + YE
Sbjct: 129 KSEDDSKLASRKYARIIQKIGFAAKFTDFKIQNIVGSCDVKFPIRLEGLAFSHGTFSSYE 188
Query: 164 PELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
PEL PG+ YR+ +PK L IF +G I +T +I
Sbjct: 189 PELFPGLIYRMVKPKIVLLIFVSGKIVLTGAKQREEI 225
>gi|344306713|ref|XP_003422029.1| PREDICTED: TATA-box-binding protein-like [Loxodonta africana]
Length = 324
Score = 145 bits (366), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 67/157 (42%), Positives = 105/157 (66%), Gaps = 2/157 (1%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGA 104
+ N+V + ++ C L+L+ IAL N EY + V M++R+P TTA I+SSGK+ CTGA
Sbjct: 150 LQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 209
Query: 105 TSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKHRA-AEYE 163
SE+QS++AAR+YAR +Q+LGF A+F +F++ N++G+C + F IR+ H+ + YE
Sbjct: 210 KSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSYE 269
Query: 164 PELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
PEL PG+ YR+ +P+ L IF +G + +T +I
Sbjct: 270 PELFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRAEI 306
>gi|44967798|gb|AAS49578.1| TATA box binding protein (TBP)-associated factor [Protopterus
dolloi]
Length = 250
Score = 145 bits (366), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 70/177 (39%), Positives = 111/177 (62%), Gaps = 2/177 (1%)
Query: 26 PIQNHAPPQPPAHDPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKL 84
P+ P P + + + N+V + ++ C L+L+ IAL N EY + V M++
Sbjct: 73 PMTPVTPATPASESSGIVPQLQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRI 132
Query: 85 RKPYTTASIWSSGKITCTGATSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSM 144
R+P TTA I+SSGK+ CTGA SE+QS++AAR+YAR +Q+LGF A+F +F++ N++G+C +
Sbjct: 133 REPRTTALIFSSGKMVCTGAKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDV 192
Query: 145 PFAIRILQFSEKHRA-AEYEPELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
F IR+ H+ + YEPEL PG+ YR+ +P+ L IF +G + +T +I
Sbjct: 193 KFPIRLEGLVLTHQQFSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRAEI 249
>gi|224047784|ref|XP_002190631.1| PREDICTED: TATA-box-binding protein [Taeniopygia guttata]
Length = 302
Score = 145 bits (366), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 67/157 (42%), Positives = 105/157 (66%), Gaps = 2/157 (1%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGA 104
+ N+V + ++ C L+L+ IAL N EY + V M++R+P TTA I+SSGK+ CTGA
Sbjct: 128 LQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 187
Query: 105 TSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKHRA-AEYE 163
SE+QS++AAR+YAR +Q+LGF A+F +F++ N++G+C + F IR+ H+ + YE
Sbjct: 188 KSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSYE 247
Query: 164 PELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
PEL PG+ YR+ +P+ L IF +G + +T +I
Sbjct: 248 PELFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRAEI 284
>gi|335309027|ref|XP_003361466.1| PREDICTED: TATA-box-binding protein [Sus scrofa]
Length = 326
Score = 145 bits (366), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 69/163 (42%), Positives = 108/163 (66%), Gaps = 2/163 (1%)
Query: 40 PEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGK 98
P + I+ N+V + ++ C L+L+ IAL N EY + V M++R+P TTA I+SSGK
Sbjct: 146 PICNRIVGNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGK 205
Query: 99 ITCTGATSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKHR 158
+ CTGA SE+QS++AAR+YAR +Q+LGF A+F +F++ N++G+C + F IR+ H+
Sbjct: 206 MVCTGAKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQ 265
Query: 159 A-AEYEPELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
+ YEPEL PG+ YR+ +P+ L IF +G + +T +I
Sbjct: 266 QFSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRAEI 308
>gi|392596142|gb|EIW85465.1| TBP-domain-containing protein [Coniophora puteana RWD-64-598 SS2]
Length = 295
Score = 145 bits (366), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 83/226 (36%), Positives = 128/226 (56%), Gaps = 30/226 (13%)
Query: 2 TTAGMTTTHSSHSEQEPPPTQTVVPIQN--HA-----PPQPPA---------------HD 39
T G + SH+ PP + ++ P+ N HA P PP+ H
Sbjct: 56 TLPGPSPLSQSHT---PPQSTSITPVTNGVHANAAAGPSTPPSSTVPSTPAPLTLEQQHI 112
Query: 40 PEVDIII---NNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWS 95
VD I+ N+V + ++ C L+L+ IAL+ N EY + V M++R P TTA I++
Sbjct: 113 TAVDGIVPTLQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIRDPKTTALIFA 172
Query: 96 SGKITCTGATSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSE 155
SGK+ TGA SED S++A+R+YAR +Q+LGF A+F+ F++ N++G+C + F IR+ +
Sbjct: 173 SGKMVVTGAKSEDDSRLASRKYARIVQKLGFDAKFSEFKIQNIVGSCDVKFPIRLEGLAY 232
Query: 156 KH-RAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
H + + YEPEL PG+ YR+ +PK L IF +G I +T +I
Sbjct: 233 SHGQFSSYEPELFPGLIYRMLKPKVVLLIFVSGKIVLTGAKVREEI 278
>gi|390598615|gb|EIN08013.1| TATA-box binding protein, partial [Punctularia strigosozonata
HHB-11173 SS5]
Length = 189
Score = 145 bits (366), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 67/157 (42%), Positives = 104/157 (66%), Gaps = 2/157 (1%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGA 104
+ N+V + ++ C L+L+ IAL+ N EY + V M++R P TTA I++SGK+ TGA
Sbjct: 16 LQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIRDPKTTALIFASGKMVVTGA 75
Query: 105 TSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKH-RAAEYE 163
SED S++AAR+YAR +Q+LGF A+F+ F++ N++G+C + F IR+ + H + + YE
Sbjct: 76 KSEDDSRLAARKYARIIQKLGFDAKFSEFKIQNIVGSCDVKFPIRLEGLAYSHGQFSSYE 135
Query: 164 PELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
PEL PG+ YR+ +PK L IF +G I +T +I
Sbjct: 136 PELFPGLIYRMLKPKVVLLIFVSGKIVLTGAKVREEI 172
>gi|164656154|ref|XP_001729205.1| hypothetical protein MGL_3672 [Malassezia globosa CBS 7966]
gi|159103095|gb|EDP41991.1| hypothetical protein MGL_3672 [Malassezia globosa CBS 7966]
Length = 257
Score = 145 bits (365), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 66/154 (42%), Positives = 103/154 (66%), Gaps = 2/154 (1%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGA 104
+ N+V + ++ L+L+ IAL+ N EY + V M++R+P TTA I++SGK+ TGA
Sbjct: 77 LQNIVATVNLEARLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVITGA 136
Query: 105 TSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKHRA-AEYE 163
SED S++A+R+YAR +Q+LGF+ARF+ F++ N++G+C + F IR+ + H + YE
Sbjct: 137 KSEDDSRLASRKYARIIQKLGFEARFSEFKIQNIVGSCDVRFPIRLEGLAYSHGVYSSYE 196
Query: 164 PELHPGVTYRITRPKATLKIFSTGGITVTACNDS 197
PEL PG+ YR+ +PK L IF +G I +T S
Sbjct: 197 PELFPGLIYRMVKPKVVLLIFVSGKIVLTGAKSS 230
>gi|229577173|ref|NP_001153317.1| TATA binding protein [Nasonia vitripennis]
Length = 306
Score = 145 bits (365), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 68/171 (39%), Positives = 111/171 (64%), Gaps = 2/171 (1%)
Query: 32 PPQPPAHDPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEY-RRENGMVTMKLRKPYTT 90
P P + DP + + N+V + ++ L+L++IAL+ N E+ + V M++R+P TT
Sbjct: 119 PMTPASADPAILPQVQNIVSTVNLNGKLDLKKIALHARNAEFIPKRFAAVIMRIREPRTT 178
Query: 91 ASIWSSGKITCTGATSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRI 150
A I+SSGK+ CTGA SE+ S++AAR+YAR +Q+LGF A+F +F++ N++G+C + F IR+
Sbjct: 179 ALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRL 238
Query: 151 LQFSEKH-RAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
H + + YEPEL PG+ YR+ +P+ L IF +G + +T +I
Sbjct: 239 EGLVLTHAQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLTGAKVRQEI 289
>gi|426235061|ref|XP_004011509.1| PREDICTED: TATA-box-binding protein isoform 2 [Ovis aries]
Length = 306
Score = 145 bits (365), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 67/157 (42%), Positives = 105/157 (66%), Gaps = 2/157 (1%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGA 104
+ N+V + ++ C L+L+ IAL N EY + V M++R+P TTA I+SSGK+ CTGA
Sbjct: 132 LQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 191
Query: 105 TSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKHRA-AEYE 163
SE+QS++AAR+YAR +Q+LGF A+F +F++ N++G+C + F IR+ H+ + YE
Sbjct: 192 KSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSYE 251
Query: 164 PELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
PEL PG+ YR+ +P+ L IF +G + +T +I
Sbjct: 252 PELFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRAEI 288
>gi|426235059|ref|XP_004011508.1| PREDICTED: TATA-box-binding protein isoform 1 [Ovis aries]
Length = 314
Score = 145 bits (365), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 67/157 (42%), Positives = 105/157 (66%), Gaps = 2/157 (1%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGA 104
+ N+V + ++ C L+L+ IAL N EY + V M++R+P TTA I+SSGK+ CTGA
Sbjct: 140 LQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 199
Query: 105 TSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKHRA-AEYE 163
SE+QS++AAR+YAR +Q+LGF A+F +F++ N++G+C + F IR+ H+ + YE
Sbjct: 200 KSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSYE 259
Query: 164 PELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
PEL PG+ YR+ +P+ L IF +G + +T +I
Sbjct: 260 PELFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRAEI 296
>gi|169606198|ref|XP_001796519.1| hypothetical protein SNOG_06135 [Phaeosphaeria nodorum SN15]
gi|160706937|gb|EAT85966.2| hypothetical protein SNOG_06135 [Phaeosphaeria nodorum SN15]
Length = 247
Score = 145 bits (365), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 64/151 (42%), Positives = 103/151 (68%), Gaps = 2/151 (1%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGA 104
+ N+V + ++ L+L+ IAL+ N EY + V M++R+P TTA +++SGK+ TGA
Sbjct: 74 LQNIVATVNLSARLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALVFASGKMVVTGA 133
Query: 105 TSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKHRA-AEYE 163
SED S++A+R+YAR +Q+LGF A+FT+F++ N++G+C + F IR+ + +H + YE
Sbjct: 134 KSEDDSRLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASRHHTFSSYE 193
Query: 164 PELHPGVTYRITRPKATLKIFSTGGITVTAC 194
PEL PG+ YR+ +PK L IF +G I +T
Sbjct: 194 PELFPGLIYRMMKPKIVLLIFVSGKIVLTGA 224
>gi|403418333|emb|CCM05033.1| predicted protein [Fibroporia radiculosa]
Length = 317
Score = 145 bits (365), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 66/157 (42%), Positives = 104/157 (66%), Gaps = 2/157 (1%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGA 104
+ N+V + ++ C L+L+ IAL+ N EY + V M++R P TTA I++SGK+ TGA
Sbjct: 144 LQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIRDPKTTALIFASGKMVVTGA 203
Query: 105 TSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKH-RAAEYE 163
SED S++A+R+YAR +Q+LGF A+F+ F++ N++G+C + F IR+ + H + + YE
Sbjct: 204 KSEDDSRLASRKYARIVQKLGFDAKFSEFKIQNIVGSCDVKFPIRLEGLAYSHGQFSSYE 263
Query: 164 PELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
PEL PG+ YR+ +PK L IF +G I +T +I
Sbjct: 264 PELFPGLIYRMIKPKVVLLIFVSGKIVLTGAKVREEI 300
>gi|147906485|ref|NP_001089038.1| TATA box binding protein [Xenopus laevis]
gi|57032530|gb|AAH88819.1| LOC503680 protein [Xenopus laevis]
Length = 296
Score = 145 bits (365), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 72/179 (40%), Positives = 112/179 (62%), Gaps = 5/179 (2%)
Query: 18 PPPTQTVVPIQNHAPPQPPAHDPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYR-RE 76
P P + PI P P + + + N+V + ++ C L+L+ IAL N EY +
Sbjct: 97 PSPMTPMTPI---TPATPASESSGIVPQLQNIVSTVNLGCKLDLKTIALRARNAEYNPKR 153
Query: 77 NGMVTMKLRKPYTTASIWSSGKITCTGATSEDQSKIAARRYARCLQRLGFKARFTNFRVV 136
V M++R+P TTA I+SSGK+ CTGA SE+QS++AAR+YAR +Q+LGF A+F +F++
Sbjct: 154 FAAVIMRIREPRTTALIFSSGKMVCTGAKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQ 213
Query: 137 NVLGTCSMPFAIRILQFSEKHRA-AEYEPELHPGVTYRITRPKATLKIFSTGGITVTAC 194
N++G+C + F IR+ H+ + YEPEL PG+ YR+ +P+ L IF +G + +T
Sbjct: 214 NMVGSCDVKFPIRLEGLVLTHQQFSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLTGA 272
>gi|62858635|ref|NP_001016339.1| TATA-box-binding protein [Xenopus (Silurana) tropicalis]
gi|123907365|sp|Q28GG8.1|TBP_XENTR RecName: Full=TATA-box-binding protein; AltName: Full=TATA
sequence-binding protein; AltName: Full=TATA-binding
factor; AltName: Full=TATA-box factor; AltName:
Full=Transcription initiation factor TFIID TBP subunit
gi|89266978|emb|CAJ83650.1| TATA box binding protein [Xenopus (Silurana) tropicalis]
gi|169642632|gb|AAI60510.1| TATA box binding protein [Xenopus (Silurana) tropicalis]
gi|213624491|gb|AAI71176.1| TATA box binding protein [Xenopus (Silurana) tropicalis]
gi|213627356|gb|AAI71174.1| TATA box binding protein [Xenopus (Silurana) tropicalis]
Length = 297
Score = 145 bits (365), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 72/179 (40%), Positives = 112/179 (62%), Gaps = 5/179 (2%)
Query: 18 PPPTQTVVPIQNHAPPQPPAHDPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYR-RE 76
P P + PI P P + + + N+V + ++ C L+L+ IAL N EY +
Sbjct: 98 PSPMTPMTPI---TPATPASESSGIVPQLQNIVSTVNLGCKLDLKTIALRARNAEYNPKR 154
Query: 77 NGMVTMKLRKPYTTASIWSSGKITCTGATSEDQSKIAARRYARCLQRLGFKARFTNFRVV 136
V M++R+P TTA I+SSGK+ CTGA SE+QS++AAR+YAR +Q+LGF A+F +F++
Sbjct: 155 FAAVIMRIREPRTTALIFSSGKMVCTGAKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQ 214
Query: 137 NVLGTCSMPFAIRILQFSEKHRA-AEYEPELHPGVTYRITRPKATLKIFSTGGITVTAC 194
N++G+C + F IR+ H+ + YEPEL PG+ YR+ +P+ L IF +G + +T
Sbjct: 215 NMVGSCDVKFPIRLEGLVLTHQQFSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLTGA 273
>gi|44969211|gb|AAS49602.1| TATA box-binding protein [Scyliorhinus canicula]
Length = 253
Score = 145 bits (365), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 70/179 (39%), Positives = 112/179 (62%), Gaps = 2/179 (1%)
Query: 24 VVPIQNHAPPQPPAHDPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTM 82
+ P+ P P + + + N+V + ++ C L+L+ IAL N EY + V M
Sbjct: 70 MTPMTLITPATPASESSGIVPQLQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIM 129
Query: 83 KLRKPYTTASIWSSGKITCTGATSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTC 142
++R+P TTA I+SSGK+ CTGA SE+QS++AAR+YAR +Q+LGF A+F +F++ N++G+C
Sbjct: 130 RIREPRTTALIFSSGKMVCTGARSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSC 189
Query: 143 SMPFAIRILQFSEKHRA-AEYEPELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
+ F IR+ H+ + YEPEL PG+ YR+ +P+ L IF +G + +T +I
Sbjct: 190 DVKFPIRLEGLVLTHQQFSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRAEI 248
>gi|365987133|ref|XP_003670398.1| hypothetical protein NDAI_0E03380 [Naumovozyma dairenensis CBS 421]
gi|343769168|emb|CCD25155.1| hypothetical protein NDAI_0E03380 [Naumovozyma dairenensis CBS 421]
Length = 264
Score = 145 bits (365), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 66/157 (42%), Positives = 105/157 (66%), Gaps = 2/157 (1%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGA 104
+ N+V + ++ C L+L+ +AL+ N EY + V M++R+P TTA I++SGK+ TGA
Sbjct: 91 LQNIVATVNLGCRLDLKTVALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGA 150
Query: 105 TSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKHRA-AEYE 163
SED SK+A+R+YAR +Q++GF A+FT+F++ N++G+C + F IR+ + H + YE
Sbjct: 151 KSEDDSKLASRKYARIIQKIGFAAKFTDFKIQNIVGSCDVKFPIRLEGLAFSHGTFSSYE 210
Query: 164 PELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
PEL PG+ YR+ +PK L IF +G I +T +I
Sbjct: 211 PELFPGLIYRMVKPKIVLLIFVSGKIVLTGAKQREEI 247
>gi|392567667|gb|EIW60842.1| TBP-domain-containing protein [Trametes versicolor FP-101664 SS1]
Length = 308
Score = 145 bits (365), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 66/157 (42%), Positives = 104/157 (66%), Gaps = 2/157 (1%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGA 104
+ N+V + ++ C L+L+ IAL+ N EY + V M++R P TTA I++SGK+ TGA
Sbjct: 135 LQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIRDPKTTALIFASGKMVVTGA 194
Query: 105 TSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKH-RAAEYE 163
SED S++A+R+YAR +Q+LGF A+F+ F++ N++G+C + F IR+ + H + + YE
Sbjct: 195 KSEDDSRLASRKYARIVQKLGFDAKFSEFKIQNIVGSCDVKFPIRLEGLAYSHGQFSSYE 254
Query: 164 PELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
PEL PG+ YR+ +PK L IF +G I +T +I
Sbjct: 255 PELFPGLIYRMIKPKVVLLIFVSGKIVLTGAKVREEI 291
>gi|354486300|ref|XP_003505319.1| PREDICTED: TATA-box-binding protein-like [Cricetulus griseus]
gi|344249386|gb|EGW05490.1| TATA-box-binding protein [Cricetulus griseus]
Length = 315
Score = 145 bits (365), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 66/152 (43%), Positives = 103/152 (67%), Gaps = 2/152 (1%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGA 104
+ N+V + ++ C L+L+ IAL N EY + V M++R+P TTA I+SSGK+ CTGA
Sbjct: 141 LQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 200
Query: 105 TSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKHRA-AEYE 163
SE+QS++AAR+YAR +Q+LGF A+F +F++ N++G+C + F IR+ H+ + YE
Sbjct: 201 KSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSYE 260
Query: 164 PELHPGVTYRITRPKATLKIFSTGGITVTACN 195
PEL PG+ YR+ +P+ L IF +G + +T
Sbjct: 261 PELFPGLIYRMIKPRIVLLIFVSGKVVLTGAK 292
>gi|409082748|gb|EKM83106.1| hypothetical protein AGABI1DRAFT_111611 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 306
Score = 144 bits (364), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 66/157 (42%), Positives = 104/157 (66%), Gaps = 2/157 (1%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGA 104
+ N+V + ++ C L+L+ IAL+ N EY + V M++R P TTA I++SGK+ TGA
Sbjct: 133 LQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIRDPKTTALIFASGKMVVTGA 192
Query: 105 TSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKH-RAAEYE 163
SED S++A+R+YAR +Q+LGF A+F+ F++ N++G+C + F IR+ + H + + YE
Sbjct: 193 KSEDDSRLASRKYARIVQKLGFDAKFSEFKIQNIVGSCDVKFPIRLEGLAYSHGQFSSYE 252
Query: 164 PELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
PEL PG+ YR+ +PK L IF +G I +T +I
Sbjct: 253 PELFPGLIYRMIKPKVVLLIFVSGKIVLTGAKVREEI 289
>gi|449278063|gb|EMC86030.1| TATA-box-binding protein [Columba livia]
Length = 301
Score = 144 bits (364), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 76/197 (38%), Positives = 118/197 (59%), Gaps = 6/197 (3%)
Query: 6 MTTTH-SSHSEQEPPPTQTVVPIQNHAPPQPPAHDPEVDIIINNVVCSFSVRCHLNLRQI 64
+TT H + P P + PI P P + + + N+V + ++ C L+L+ I
Sbjct: 91 LTTAHLPGTTPLYPSPMTPMTPI---TPATPASESSGIVPQLQNIVSTVNLGCKLDLKTI 147
Query: 65 ALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGATSEDQSKIAARRYARCLQR 123
AL N EY + V M++R+P TTA I+SSGK+ CTGA SE+QS++AAR+YAR +Q+
Sbjct: 148 ALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKSEEQSRLAARKYARVVQK 207
Query: 124 LGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKHRAAEYEPELHPGVTYRITRPKATLKI 183
LGF A+F +F++ N++G+C + F IR L+ + YEPEL PG+ YR+ +P+ L I
Sbjct: 208 LGFPAKFLDFKIQNMVGSCDVKFPIR-LEGXXXXKKMLYEPELFPGLIYRMIKPRIVLLI 266
Query: 184 FSTGGITVTACNDSNKI 200
F +G + +T +I
Sbjct: 267 FVSGKVVLTGAKVRAEI 283
>gi|26351419|dbj|BAC39346.1| unnamed protein product [Mus musculus]
Length = 316
Score = 144 bits (364), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 73/185 (39%), Positives = 114/185 (61%), Gaps = 5/185 (2%)
Query: 18 PPPTQTVVPIQNHAPPQPPAHDPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYR-RE 76
P P + PI P P + + + N+V + ++ C L+L+ IAL N EY +
Sbjct: 117 PSPMTPMTPI---TPATPASESSGIVPQLQNIVSTVNLGCKLDLKTIALRPRNAEYNPKR 173
Query: 77 NGMVTMKLRKPYTTASIWSSGKITCTGATSEDQSKIAARRYARCLQRLGFKARFTNFRVV 136
V M++R+P TTA I+SSGK+ CTGA SE+QS++AAR+YAR +Q+LGF A+F +F++
Sbjct: 174 FAAVIMRIREPRTTALIFSSGKMVCTGAKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQ 233
Query: 137 NVLGTCSMPFAIRILQFSEKHRA-AEYEPELHPGVTYRITRPKATLKIFSTGGITVTACN 195
N++G+C + F IR+ H+ + YEPEL PG+ YR+ +P+ L IF +G + +T
Sbjct: 234 NMVGSCDVKFPIRLEGLVLTHQQFSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLTGAK 293
Query: 196 DSNKI 200
+I
Sbjct: 294 VRAEI 298
>gi|207345821|gb|EDZ72518.1| YER148Wp-like protein [Saccharomyces cerevisiae AWRI1631]
Length = 240
Score = 144 bits (364), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 66/157 (42%), Positives = 104/157 (66%), Gaps = 2/157 (1%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGA 104
+ N+V + ++ C L+L+ +AL+ N EY V M++R+P TTA I++SGK+ TGA
Sbjct: 67 LQNIVATVTLGCRLDLKTVALHARNAEYNPSRFAAVIMRIREPKTTALIFASGKMVVTGA 126
Query: 105 TSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKHRA-AEYE 163
SED SK+A+R+YAR +Q++GF A+FT+F++ N++G+C + F IR+ + H + YE
Sbjct: 127 KSEDDSKLASRKYARIIQKIGFAAKFTDFKIQNIVGSCDVKFPIRLEGLAFSHGTFSSYE 186
Query: 164 PELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
PEL PG+ YR+ +PK L IF +G I +T +I
Sbjct: 187 PELFPGLIYRMVKPKIVLLIFVSGKIVLTGAKQREEI 223
>gi|389749066|gb|EIM90243.1| TBP-domain-containing protein [Stereum hirsutum FP-91666 SS1]
Length = 301
Score = 144 bits (364), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 66/157 (42%), Positives = 104/157 (66%), Gaps = 2/157 (1%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGA 104
+ N+V + ++ C L+L+ IAL+ N EY + V M++R P TTA I++SGK+ TGA
Sbjct: 128 LQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIRDPKTTALIFASGKMVVTGA 187
Query: 105 TSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKH-RAAEYE 163
SED S++A+R+YAR +Q+LGF A+F+ F++ N++G+C + F IR+ + H + + YE
Sbjct: 188 KSEDDSRLASRKYARIVQKLGFDAKFSEFKIQNIVGSCDVKFPIRLEGLAYSHGQFSSYE 247
Query: 164 PELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
PEL PG+ YR+ +PK L IF +G I +T +I
Sbjct: 248 PELFPGLIYRMIKPKVVLLIFVSGKIVLTGAKVREEI 284
>gi|169854094|ref|XP_001833724.1| transcription initiation factor TFIID-1 [Coprinopsis cinerea
okayama7#130]
gi|116505191|gb|EAU88086.1| transcription initiation factor TFIID-1 [Coprinopsis cinerea
okayama7#130]
Length = 308
Score = 144 bits (364), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 66/157 (42%), Positives = 105/157 (66%), Gaps = 2/157 (1%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGA 104
+ N+V + ++ C L+L+ IAL+ N EY + V M++R+P TTA I++SGK+ TGA
Sbjct: 135 LQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGA 194
Query: 105 TSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKH-RAAEYE 163
SED S++A+R+YAR +Q+LGF A+F+ F++ N++G+C + F IR+ + H + + YE
Sbjct: 195 KSEDDSRLASRKYARIVQKLGFDAKFSEFKIQNIVGSCDVKFPIRLEGLAYSHGQFSSYE 254
Query: 164 PELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
PEL PG+ YR+ +PK L IF +G I +T +I
Sbjct: 255 PELFPGLIYRMIKPKVVLLIFVSGKIVLTGAKVREEI 291
>gi|68490865|ref|XP_710759.1| hypothetical protein CaO19.9395 [Candida albicans SC5314]
gi|68490947|ref|XP_710721.1| hypothetical protein CaO19.1837 [Candida albicans SC5314]
gi|3334374|sp|O43133.1|TBP_CANAL RecName: Full=TATA-box-binding protein; AltName: Full=TATA
sequence-binding protein; Short=TBP; AltName:
Full=TATA-binding factor; AltName: Full=TATA-box factor;
AltName: Full=Transcription initiation factor TFIID TBP
subunit
gi|2708495|gb|AAC49985.1| TATA-binding protein [Candida albicans]
gi|2708497|gb|AAC49986.1| TATA-binding protein [Candida albicans]
gi|46431958|gb|EAK91473.1| hypothetical protein CaO19.1837 [Candida albicans SC5314]
gi|46432000|gb|EAK91511.1| hypothetical protein CaO19.9395 [Candida albicans SC5314]
Length = 238
Score = 144 bits (364), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 67/157 (42%), Positives = 103/157 (65%), Gaps = 2/157 (1%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGA 104
+ N+V + ++ C L+L+ IAL+ N EY + V M++R P TTA I++SGK+ TGA
Sbjct: 65 LQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIRDPKTTALIFASGKMVVTGA 124
Query: 105 TSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKHRA-AEYE 163
SED SK+A+R+YAR +Q+LGF A+F +F++ N++G+ + FAIR+ + H + YE
Sbjct: 125 KSEDDSKLASRKYARIIQKLGFNAKFCDFKIQNIVGSTDVKFAIRLEGLAFAHGTFSSYE 184
Query: 164 PELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
PEL PG+ YR+ +PK L IF +G I +T +I
Sbjct: 185 PELFPGLIYRMVKPKIVLLIFVSGKIVLTGAKKREEI 221
>gi|336367903|gb|EGN96247.1| hypothetical protein SERLA73DRAFT_76226 [Serpula lacrymans var.
lacrymans S7.3]
gi|336380633|gb|EGO21786.1| hypothetical protein SERLADRAFT_410307 [Serpula lacrymans var.
lacrymans S7.9]
Length = 306
Score = 144 bits (363), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 66/157 (42%), Positives = 104/157 (66%), Gaps = 2/157 (1%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGA 104
+ N+V + ++ C L+L+ IAL+ N EY + V M++R P TTA I++SGK+ TGA
Sbjct: 133 LQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIRDPKTTALIFASGKMVVTGA 192
Query: 105 TSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKH-RAAEYE 163
SED S++A+R+YAR +Q+LGF A+F+ F++ N++G+C + F IR+ + H + + YE
Sbjct: 193 KSEDDSRLASRKYARIVQKLGFDAKFSEFKIQNIVGSCDVKFPIRLEGLAYSHGQFSSYE 252
Query: 164 PELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
PEL PG+ YR+ +PK L IF +G I +T +I
Sbjct: 253 PELFPGLIYRMIKPKVVLLIFVSGKIVLTGAKVREEI 289
>gi|255728115|ref|XP_002548983.1| TATA-box binding protein [Candida tropicalis MYA-3404]
gi|240133299|gb|EER32855.1| TATA-box binding protein [Candida tropicalis MYA-3404]
Length = 257
Score = 144 bits (363), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 67/157 (42%), Positives = 103/157 (65%), Gaps = 2/157 (1%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGA 104
+ N+V + ++ C L+L+ IAL+ N EY + V M++R P TTA I++SGK+ TGA
Sbjct: 84 LQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIRDPKTTALIFASGKMVVTGA 143
Query: 105 TSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKHRA-AEYE 163
SED SK+A+R+YAR +Q+LGF A+F +F++ N++G+ + FAIR+ + H + YE
Sbjct: 144 KSEDDSKLASRKYARIIQKLGFNAKFCDFKIQNIVGSTDVKFAIRLEGLAFAHGTFSSYE 203
Query: 164 PELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
PEL PG+ YR+ +PK L IF +G I +T +I
Sbjct: 204 PELFPGLIYRMVKPKIVLLIFVSGKIVLTGAKKREEI 240
>gi|153792245|ref|NP_001093264.1| TATA box binding protein [Takifugu rubripes]
gi|148910855|tpg|DAA06038.1| TPA_inf: TATA box binding protein [Takifugu rubripes]
Length = 301
Score = 144 bits (363), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 69/173 (39%), Positives = 110/173 (63%), Gaps = 2/173 (1%)
Query: 24 VVPIQNHAPPQPPAHDPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTM 82
+ P+ P P + + + N+V + ++ C L+L+ IAL N EY + V M
Sbjct: 105 LTPMTPITPATPASESSGIVPQLQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIM 164
Query: 83 KLRKPYTTASIWSSGKITCTGATSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTC 142
++R+P TTA I+SSGK+ CTGA SE+QS++AAR+YAR +Q+LGF A+F +F++ N++G+C
Sbjct: 165 RIREPRTTALIFSSGKMVCTGAKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSC 224
Query: 143 SMPFAIRILQFSEKHRA-AEYEPELHPGVTYRITRPKATLKIFSTGGITVTAC 194
+ F IR+ H+ + YEPEL PG+ YR+ +P+ L IF +G + +T
Sbjct: 225 DVRFPIRLEGLVLTHQQFSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLTGA 277
>gi|302693080|ref|XP_003036219.1| hypothetical protein SCHCODRAFT_81516 [Schizophyllum commune H4-8]
gi|300109915|gb|EFJ01317.1| hypothetical protein SCHCODRAFT_81516 [Schizophyllum commune H4-8]
Length = 286
Score = 144 bits (363), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 66/157 (42%), Positives = 104/157 (66%), Gaps = 2/157 (1%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGA 104
+ N+V + ++ C L+L+ IAL+ N EY + V M++R P TTA I++SGK+ TGA
Sbjct: 113 LQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIRDPKTTALIFASGKMVVTGA 172
Query: 105 TSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKH-RAAEYE 163
SED S++A+R+YAR +Q+LGF A+F+ F++ N++G+C + F IR+ + H + + YE
Sbjct: 173 KSEDDSRLASRKYARIVQKLGFDAKFSEFKIQNIVGSCDVRFPIRLEGLAYSHGQFSSYE 232
Query: 164 PELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
PEL PG+ YR+ +PK L IF +G I +T +I
Sbjct: 233 PELFPGLIYRMIKPKVVLLIFVSGKIVLTGAKVREEI 269
>gi|255719850|ref|XP_002556205.1| KLTH0H07502p [Lachancea thermotolerans]
gi|238942171|emb|CAR30343.1| KLTH0H07502p [Lachancea thermotolerans CBS 6340]
Length = 230
Score = 144 bits (363), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 65/157 (41%), Positives = 104/157 (66%), Gaps = 2/157 (1%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGA 104
+ N+V + ++ C L+L+ +AL+ N EY + V M++R+P TTA I++SGK+ GA
Sbjct: 57 LQNIVATVNLDCRLDLKTVALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVIGA 116
Query: 105 TSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKHRA-AEYE 163
SED SK+A+R+YAR +Q++GF A+FT+F++ N++G+C + F IR+ + H + YE
Sbjct: 117 KSEDDSKLASRKYARIIQKIGFSAKFTDFKIQNIVGSCDVKFPIRLEGLAFSHGTFSSYE 176
Query: 164 PELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
PEL PG+ YR+ +PK L IF +G I +T +I
Sbjct: 177 PELFPGLIYRMVKPKIVLLIFVSGKIVLTGAKQREEI 213
>gi|194388082|dbj|BAG65425.1| unnamed protein product [Homo sapiens]
Length = 318
Score = 144 bits (363), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 67/157 (42%), Positives = 105/157 (66%), Gaps = 2/157 (1%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGA 104
+ N+V + ++ C L+L+ IAL N EY + V M++R+P TTA I+SSGK+ CTGA
Sbjct: 144 LQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 203
Query: 105 TSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKHRA-AEYE 163
SE+QS++AAR+YAR +Q+LGF A+F +F++ N++G+C + F IR+ H+ + YE
Sbjct: 204 KSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSYE 263
Query: 164 PELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
PEL PG+ YR+ +P+ L IF +G + +T +I
Sbjct: 264 PELFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRAEI 300
>gi|409046465|gb|EKM55945.1| hypothetical protein PHACADRAFT_256913 [Phanerochaete carnosa
HHB-10118-sp]
Length = 321
Score = 144 bits (363), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 66/157 (42%), Positives = 104/157 (66%), Gaps = 2/157 (1%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGA 104
+ N+V + ++ C L+L+ IAL+ N EY + V M++R P TTA I++SGK+ TGA
Sbjct: 148 LQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIRDPKTTALIFASGKMVVTGA 207
Query: 105 TSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKH-RAAEYE 163
SED S++A+R+YAR +Q+LGF A+F+ F++ N++G+C + F IR+ + H + + YE
Sbjct: 208 KSEDDSRLASRKYARIVQKLGFDAKFSEFKIQNIVGSCDVKFPIRLEGLAYSHGQFSSYE 267
Query: 164 PELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
PEL PG+ YR+ +PK L IF +G I +T +I
Sbjct: 268 PELFPGLIYRMIKPKVVLLIFVSGKIVLTGAKVREEI 304
>gi|170591981|ref|XP_001900748.1| TATA-box binding protein [Brugia malayi]
gi|158591900|gb|EDP30503.1| TATA-box binding protein, putative [Brugia malayi]
Length = 347
Score = 144 bits (363), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 72/175 (41%), Positives = 114/175 (65%), Gaps = 6/175 (3%)
Query: 25 VPIQNHAPPQPPAHDPEVDI---IINNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMV 80
+P+ + PPQ P +DI + N+V + ++ L+L++IAL+ N EY + V
Sbjct: 152 IPMVSTNPPQTPGSQ-LIDIPSPALQNIVSTVNLGVPLDLKKIALHARNAEYNPKRFAAV 210
Query: 81 TMKLRKPYTTASIWSSGKITCTGATSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLG 140
M++R+P TTA I+SSGK+ CTGA SE+ S++AAR+YAR +Q+LGF A+FT F+V N++G
Sbjct: 211 IMRIREPRTTALIFSSGKMVCTGAKSEESSRLAARKYARIVQKLGFNAKFTEFKVQNMVG 270
Query: 141 TCSMPFAIRILQFSEKH-RAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTAC 194
+C + F I++ H + + YEPEL PG+ YR+ +P+ L IF +G + +T
Sbjct: 271 SCDVRFPIQLEGLCLTHTQFSTYEPELFPGLIYRMVKPRVVLLIFVSGKVVITGA 325
>gi|2897847|gb|AAC03409.1| transcription factor IID [Homo sapiens]
Length = 339
Score = 144 bits (363), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 73/185 (39%), Positives = 114/185 (61%), Gaps = 5/185 (2%)
Query: 18 PPPTQTVVPIQNHAPPQPPAHDPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYR-RE 76
P P + PI P P + + + N+V + ++ C L+L+ IAL N EY +
Sbjct: 140 PSPMTPMTPI---TPATPASESSGIVPQLQNIVSTVNLGCKLDLKTIALRRRNAEYNPKR 196
Query: 77 NGMVTMKLRKPYTTASIWSSGKITCTGATSEDQSKIAARRYARCLQRLGFKARFTNFRVV 136
V M++R+P TTA I+SSGK+ CTGA SE+QS++AAR+YAR +Q+LGF A+F +F++
Sbjct: 197 FAAVIMRIREPRTTALIFSSGKMVCTGAKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQ 256
Query: 137 NVLGTCSMPFAIRILQFSEKHRA-AEYEPELHPGVTYRITRPKATLKIFSTGGITVTACN 195
N++G+C + F IR+ H+ + YEPEL PG+ YR+ +P+ L IF +G + +T
Sbjct: 257 NMVGSCDVKFPIRLEGLVLTHQQFSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLTGAK 316
Query: 196 DSNKI 200
+I
Sbjct: 317 VRAEI 321
>gi|297829888|ref|XP_002882826.1| transcription factor IID-1 [Arabidopsis lyrata subsp. lyrata]
gi|297328666|gb|EFH59085.1| transcription factor IID-1 [Arabidopsis lyrata subsp. lyrata]
Length = 200
Score = 144 bits (363), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 68/152 (44%), Positives = 101/152 (66%), Gaps = 2/152 (1%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGA 104
+ N+V + ++ C L+L+ IAL N EY + V M++R+P TTA I++SGK+ CTGA
Sbjct: 25 LQNIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVCTGA 84
Query: 105 TSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKHRA-AEYE 163
SE SK+AAR+YAR +Q+LGF A+F +F++ N++G+C + F IR+ + H A + YE
Sbjct: 85 KSEYFSKMAARKYARIVQKLGFSAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHAAFSSYE 144
Query: 164 PELHPGVTYRITRPKATLKIFSTGGITVTACN 195
PEL PG+ YR+ PK L IF +G I +T
Sbjct: 145 PELFPGLIYRMKVPKIVLLIFVSGKIVITGAK 176
>gi|341900545|gb|EGT56480.1| CBN-TBP-1 protein [Caenorhabditis brenneri]
Length = 337
Score = 144 bits (363), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 74/190 (38%), Positives = 117/190 (61%), Gaps = 7/190 (3%)
Query: 14 SEQEPPPTQTVVPIQNHAPPQPPAHDPEVDI-IINNVVCSFSVRCHLNLRQIALNGVNVE 72
S +PPP+ + P PA E+ + + N+V + ++ L+L++IAL+ N E
Sbjct: 136 SMMQPPPSNIAAALV----PATPASHMEIPMPALQNIVSTVNLGVQLDLKKIALHARNAE 191
Query: 73 YR-RENGMVTMKLRKPYTTASIWSSGKITCTGATSEDQSKIAARRYARCLQRLGFKARFT 131
Y + V M++R+P TTA I+SSGK+ CTGA SE+ S++AAR+YAR +Q+LGF+A+FT
Sbjct: 192 YNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKSEEASRLAARKYARIVQKLGFQAKFT 251
Query: 132 NFRVVNVLGTCSMPFAIRILQFSEKH-RAAEYEPELHPGVTYRITRPKATLKIFSTGGIT 190
F V N++G+C + F I++ H + + YEPEL PG+ YR+ +P+ L IF +G +
Sbjct: 252 EFMVQNMVGSCDVRFPIQLEGLCITHAQFSTYEPELFPGLIYRMVKPRVVLLIFVSGKVV 311
Query: 191 VTACNDSNKI 200
+T I
Sbjct: 312 ITGAKTKKDI 321
>gi|312069027|ref|XP_003137490.1| TATA-box binding protein [Loa loa]
gi|307767348|gb|EFO26582.1| TATA-box binding protein [Loa loa]
Length = 369
Score = 144 bits (363), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 72/175 (41%), Positives = 114/175 (65%), Gaps = 6/175 (3%)
Query: 25 VPIQNHAPPQPPAHDPEVDI---IINNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMV 80
+P+ + PPQ P +DI + N+V + ++ L+L++IAL+ N EY + V
Sbjct: 174 IPMVSTNPPQTPGSQ-LIDIPSPALQNIVSTVNLGVPLDLKKIALHARNAEYNPKRFAAV 232
Query: 81 TMKLRKPYTTASIWSSGKITCTGATSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLG 140
M++R+P TTA I+SSGK+ CTGA SE+ S++AAR+YAR +Q+LGF A+FT F+V N++G
Sbjct: 233 IMRIREPRTTALIFSSGKMVCTGAKSEESSRLAARKYARIVQKLGFNAKFTEFKVQNMVG 292
Query: 141 TCSMPFAIRILQFSEKH-RAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTAC 194
+C + F I++ H + + YEPEL PG+ YR+ +P+ L IF +G + +T
Sbjct: 293 SCDVRFPIQLEGLCLTHTQFSTYEPELFPGLIYRMVKPRVVLLIFVSGKVVITGA 347
>gi|238878530|gb|EEQ42168.1| TATA-box binding protein [Candida albicans WO-1]
Length = 238
Score = 144 bits (362), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 67/157 (42%), Positives = 103/157 (65%), Gaps = 2/157 (1%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGA 104
+ N+V + ++ C L+L+ IAL+ N EY + V M++R P TTA I++SGK+ TGA
Sbjct: 65 LQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIRDPKTTALIFASGKMVVTGA 124
Query: 105 TSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKHRA-AEYE 163
SED SK+A+R+YAR +Q+LGF A+F +F++ N++G+ + FAIR+ + H + YE
Sbjct: 125 KSEDDSKLASRKYARIIQKLGFNAKFCDFKIQNIVGSTDVKFAIRLEGLAFAHGTFSSYE 184
Query: 164 PELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
PEL PG+ YR+ +PK L IF +G I +T +I
Sbjct: 185 PELFPGLIYRMVKPKIVLLIFVSGKIVLTGAKKREEI 221
>gi|170093960|ref|XP_001878201.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164646655|gb|EDR10900.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 189
Score = 144 bits (362), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 66/157 (42%), Positives = 105/157 (66%), Gaps = 2/157 (1%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGA 104
+ N+V + ++ C L+L+ IAL+ N EY + V M++R+P TTA I++SGK+ TGA
Sbjct: 16 LQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGA 75
Query: 105 TSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKH-RAAEYE 163
SED S++A+R+YAR +Q+LGF A+F+ F++ N++G+C + F IR+ + H + + YE
Sbjct: 76 KSEDDSRLASRKYARIVQKLGFDAKFSEFKIQNIVGSCDVKFPIRLEGLAYSHGQFSSYE 135
Query: 164 PELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
PEL PG+ YR+ +PK L IF +G I +T +I
Sbjct: 136 PELFPGLIYRMIKPKVVLLIFVSGKIVLTGAKVREEI 172
>gi|157265563|ref|NP_001098077.1| TATA-box-binding protein [Pan troglodytes]
gi|148910853|tpg|DAA06037.1| TPA_inf: TATA box binding protein [Pan troglodytes]
Length = 336
Score = 144 bits (362), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 73/185 (39%), Positives = 113/185 (61%), Gaps = 5/185 (2%)
Query: 18 PPPTQTVVPIQNHAPPQPPAHDPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYRREN 77
P P + PI P P + + + N+V + ++ C L+L+ IAL N EY
Sbjct: 137 PSPMTPMTPI---TPATPASESSGIVPQLQNIVSTVNLGCKLDLKTIALRARNAEYNPTR 193
Query: 78 -GMVTMKLRKPYTTASIWSSGKITCTGATSEDQSKIAARRYARCLQRLGFKARFTNFRVV 136
V M++R+P TTA I+SSGK+ CTGA SE+QS++AAR+YAR +Q+LGF A+F +F++
Sbjct: 194 FAAVIMRIREPRTTALIFSSGKMVCTGAKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQ 253
Query: 137 NVLGTCSMPFAIRILQFSEKHRA-AEYEPELHPGVTYRITRPKATLKIFSTGGITVTACN 195
N++G+C + F IR+ H+ + YEPEL PG+ YR+ +P+ L IF +G + +T
Sbjct: 254 NMVGSCDVKFPIRLEGLVLTHQQFSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLTGAK 313
Query: 196 DSNKI 200
+I
Sbjct: 314 VRAEI 318
>gi|393220621|gb|EJD06107.1| TATA-box binding protein, partial [Fomitiporia mediterranea MF3/22]
Length = 189
Score = 144 bits (362), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 66/157 (42%), Positives = 105/157 (66%), Gaps = 2/157 (1%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGA 104
+ N+V + ++ C L+L+ IAL+ N EY + V M++R+P TTA I++SGK+ TGA
Sbjct: 16 LQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGA 75
Query: 105 TSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKH-RAAEYE 163
SED S++A+R+YAR +Q+LGF A+F+ F++ N++G+C + F IR+ + H + + YE
Sbjct: 76 KSEDDSRLASRKYARIVQKLGFDAKFSEFKIQNIVGSCDVKFPIRLEGLAYSHGQFSSYE 135
Query: 164 PELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
PEL PG+ YR+ +PK L IF +G I +T +I
Sbjct: 136 PELFPGLIYRMIKPKVVLLIFVSGKIVLTGAKVREEI 172
>gi|301112330|ref|XP_002905244.1| TATA-box-binding protein [Phytophthora infestans T30-4]
gi|262095574|gb|EEY53626.1| TATA-box-binding protein [Phytophthora infestans T30-4]
Length = 251
Score = 144 bits (362), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 72/161 (44%), Positives = 102/161 (63%), Gaps = 2/161 (1%)
Query: 42 VDIIINNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKIT 100
+++ I NVV + ++ L+L+ IAL+ N EY + V M+LR P TTA I+ SGKI
Sbjct: 46 LEVKIMNVVGTVDLKTPLDLKTIALHARNAEYNPKRFSAVIMRLRDPKTTALIFGSGKIV 105
Query: 101 CTGATSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKH-RA 159
TG TSED ++AAR++ R +Q+L F A+FT F+V NV+GTC + F IR+ H R
Sbjct: 106 ITGGTSEDSCRLAARKFTRVIQKLNFPAKFTEFKVRNVMGTCDIRFPIRLEGLLNDHARF 165
Query: 160 AEYEPELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
+ YEPEL PG+ Y++ PK TL IF +G I + DSN +
Sbjct: 166 SSYEPELFPGLIYKLVEPKLTLLIFVSGKIVLCGARDSNHL 206
>gi|44967740|gb|AAS49577.1| TATA box binding protein (TBP)-associated factor [Latimeria
chalumnae]
Length = 249
Score = 144 bits (362), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 69/179 (38%), Positives = 112/179 (62%), Gaps = 2/179 (1%)
Query: 24 VVPIQNHAPPQPPAHDPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTM 82
+ P+ P P + + + N+V + ++ C L+L+ IAL N EY + V M
Sbjct: 70 MTPMTLITPATPASESSGIVPQLQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIM 129
Query: 83 KLRKPYTTASIWSSGKITCTGATSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTC 142
++R+P TTA I+SSGK+ CTGA SE+QS++AAR+YAR +Q+LGF A+F +F++ N++G+C
Sbjct: 130 RIREPRTTALIFSSGKMVCTGAKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSC 189
Query: 143 SMPFAIRILQFSEKH-RAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
+ F IR+ H +++ YEPEL PG+ YR+ +P+ L F +G + +T +I
Sbjct: 190 DVKFPIRLEGLVLTHQQSSSYEPELFPGLIYRMIKPRIVLLXFVSGKVVLTGAKVRAEI 248
>gi|339237017|ref|XP_003380063.1| TATA-box-binding protein [Trichinella spiralis]
gi|316977178|gb|EFV60321.1| TATA-box-binding protein [Trichinella spiralis]
Length = 315
Score = 144 bits (362), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 71/165 (43%), Positives = 107/165 (64%), Gaps = 3/165 (1%)
Query: 38 HDPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYRRENGMVTMKLRKPYTTASIWSSG 97
DP +D+ I NVV F+V CHL+L IA++ NV Y R G++ +++KP +WSSG
Sbjct: 101 EDP-IDLRIRNVVTMFNVCCHLDLHHIAMHTCNVIYERYRGVLIFQIKKPRCYVKMWSSG 159
Query: 98 KITCTGATSEDQSKIAARRYARCLQRL-GFKARFTNFRVVNVLGTCSMPFAIRILQFSEK 156
KIT +GA SE++++ ++R AR +Q++ G + RF ++RV N++ TC +PF IRI + +
Sbjct: 160 KITVSGAQSEEEARKSSRSVARIVQKIVGPRVRFADYRVTNIMATCKLPFGIRIPNLATE 219
Query: 157 H-RAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
+ R + YEPEL G+ +R PKATL+I STG IT+T I
Sbjct: 220 YPRESSYEPELSIGLVWRSASPKATLRIHSTGSITITGAESQADI 264
>gi|367010504|ref|XP_003679753.1| hypothetical protein TDEL_0B04130 [Torulaspora delbrueckii]
gi|359747411|emb|CCE90542.1| hypothetical protein TDEL_0B04130 [Torulaspora delbrueckii]
Length = 235
Score = 144 bits (362), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 64/157 (40%), Positives = 105/157 (66%), Gaps = 2/157 (1%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGA 104
+ N+V + ++ C L+L+ +AL+ N EY + V M++R+P TTA I++SGK+ TGA
Sbjct: 62 LQNIVATVNLGCRLDLKTVALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGA 121
Query: 105 TSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKHRA-AEYE 163
SED SK+A+R+YAR +Q++GF A+FT+F++ N++G+C + F IR+ + H + YE
Sbjct: 122 KSEDDSKLASRKYARIIQKIGFAAKFTDFKIQNIVGSCDVKFPIRLEGLAFSHGTFSSYE 181
Query: 164 PELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
PEL PG+ YR+ +PK L +F +G + +T +I
Sbjct: 182 PELFPGLIYRMVKPKIVLLVFVSGKVVLTGAKQREEI 218
>gi|402593882|gb|EJW87809.1| hypothetical protein WUBG_01280 [Wuchereria bancrofti]
Length = 396
Score = 144 bits (362), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 78/196 (39%), Positives = 117/196 (59%), Gaps = 10/196 (5%)
Query: 8 TTHSSHSEQEPPPTQTVVPIQNHAPPQPPAHDPEVDIIINNVVCSFSVRCHLNLRQIALN 67
T + +E+ PP T + + A D E+DI I NVVC++++ H++L ++ALN
Sbjct: 120 TGYDEQTEEAPPSTSSEI-----ADRDDSDEDGEIDIQIRNVVCNYTLPLHIDLHRVALN 174
Query: 68 GVNVEYRRENGMVTMKLRKPYTTASIWSSGKITCTGATSEDQSKIAARRYARCLQRLGFK 127
NV + R G++ + R P I+SSGKI G SE + K AAR AR +Q+ K
Sbjct: 175 SGNVAFDRGRGVLLKQKRNPSCYVKIYSSGKIYIVGCRSESECKRAARGVARMVQKTMGK 234
Query: 128 ----ARFTNFRVVNVLGTCSMPFAIRILQFSEKH-RAAEYEPELHPGVTYRITRPKATLK 182
R N+RV NVL TC MPF ++I + ++K+ ++YEPEL G+ +R T P+ATL+
Sbjct: 235 MMDVVRIRNYRVCNVLATCKMPFGVKIEELAQKYPDCSQYEPELSVGLIWRSTNPRATLR 294
Query: 183 IFSTGGITVTACNDSN 198
I +TG ITVTA ++S+
Sbjct: 295 IHTTGSITVTAASESD 310
>gi|451854730|gb|EMD68022.1| hypothetical protein COCSADRAFT_156488 [Cochliobolus sativus
ND90Pr]
gi|452000886|gb|EMD93346.1| hypothetical protein COCHEDRAFT_1153946 [Cochliobolus
heterostrophus C5]
Length = 249
Score = 143 bits (361), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 64/157 (40%), Positives = 105/157 (66%), Gaps = 2/157 (1%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGA 104
+ N+V + ++ L+L+ IAL+ N EY + V M++R+P TTA +++SGK+ TGA
Sbjct: 76 LQNIVATVNLSARLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALVFASGKMVVTGA 135
Query: 105 TSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKHRA-AEYE 163
SED S++A+R+YAR +Q+LGF A+FT+F++ N++G+C + F IR+ + +H + YE
Sbjct: 136 KSEDDSRLASRKYARIIQKLGFSAKFTDFKIQNIVGSCDIRFPIRLEGLASRHHTFSSYE 195
Query: 164 PELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
PEL PG+ YR+ +P+ L IF +G I +T +I
Sbjct: 196 PELFPGLIYRMMKPRIVLLIFVSGKIVLTGAKVREEI 232
>gi|189192825|ref|XP_001932751.1| TATA-box-binding protein [Pyrenophora tritici-repentis Pt-1C-BFP]
gi|330941403|ref|XP_003306059.1| hypothetical protein PTT_19076 [Pyrenophora teres f. teres 0-1]
gi|187978315|gb|EDU44941.1| TATA-box-binding protein [Pyrenophora tritici-repentis Pt-1C-BFP]
gi|311316652|gb|EFQ85856.1| hypothetical protein PTT_19076 [Pyrenophora teres f. teres 0-1]
Length = 249
Score = 143 bits (361), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 64/157 (40%), Positives = 105/157 (66%), Gaps = 2/157 (1%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGA 104
+ N+V + ++ L+L+ IAL+ N EY + V M++R+P TTA +++SGK+ TGA
Sbjct: 76 LQNIVATVNLSARLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALVFASGKMVVTGA 135
Query: 105 TSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKHRA-AEYE 163
SED S++A+R+YAR +Q+LGF A+FT+F++ N++G+C + F IR+ + +H + YE
Sbjct: 136 KSEDDSRLASRKYARIIQKLGFSAKFTDFKIQNIVGSCDIRFPIRLEGLASRHHTFSSYE 195
Query: 164 PELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
PEL PG+ YR+ +P+ L IF +G I +T +I
Sbjct: 196 PELFPGLIYRMMKPRIVLLIFVSGKIVLTGAKVREEI 232
>gi|14423952|sp|Q9NHP5.1|TBP_DROVI RecName: Full=TATA-box-binding protein; AltName: Full=TATA
sequence-binding protein; AltName: Full=TATA-binding
factor; AltName: Full=TATA-box factor; AltName:
Full=Transcription initiation factor TFIID TBP subunit
gi|8050582|gb|AAF71711.1|AF220262_1 TATA box-binding protein [Drosophila virilis]
Length = 349
Score = 143 bits (361), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 71/181 (39%), Positives = 112/181 (61%), Gaps = 2/181 (1%)
Query: 22 QTVVPIQNHAPPQPPAHDPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMV 80
QT+ P P P + DP + + N+V + ++ C L+L++IAL+ N EY + V
Sbjct: 151 QTMGPSTPMTPATPGSADPGIVPQLQNIVSTVNLCCKLDLKKIALHARNAEYNPKRFAPV 210
Query: 81 TMKLRKPYTTASIWSSGKITCTGATSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLG 140
M++R+P TTA I+SSGK+ CTGA ED S++AAR+YAR +Q+LGF+A+F + ++ N++G
Sbjct: 211 IMRIREPRTTALIFSSGKMVCTGAKGEDDSRLAARKYARIIQKLGFRAKFLDLKIQNMVG 270
Query: 141 TCSMPFAIRILQFSEKH-RAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTACNDSNK 199
C + F IR+ H + YEPEL PG+ YR+ RP+ L + + G + +T +
Sbjct: 271 LCDVKFPIRLEGLVLTHCNFSRYEPELFPGLIYRMVRPRIVLLLPAPGKVVLTGAKVRQE 330
Query: 200 I 200
I
Sbjct: 331 I 331
>gi|426200613|gb|EKV50537.1| hypothetical protein AGABI2DRAFT_44722, partial [Agaricus bisporus
var. bisporus H97]
Length = 189
Score = 143 bits (361), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 66/157 (42%), Positives = 104/157 (66%), Gaps = 2/157 (1%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGA 104
+ N+V + ++ C L+L+ IAL+ N EY + V M++R P TTA I++SGK+ TGA
Sbjct: 16 LQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIRDPKTTALIFASGKMVVTGA 75
Query: 105 TSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKH-RAAEYE 163
SED S++A+R+YAR +Q+LGF A+F+ F++ N++G+C + F IR+ + H + + YE
Sbjct: 76 KSEDDSRLASRKYARIVQKLGFDAKFSEFKIQNIVGSCDVKFPIRLEGLAYSHGQFSSYE 135
Query: 164 PELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
PEL PG+ YR+ +PK L IF +G I +T +I
Sbjct: 136 PELFPGLIYRMIKPKVVLLIFVSGKIVLTGAKVREEI 172
>gi|242034379|ref|XP_002464584.1| hypothetical protein SORBIDRAFT_01g021297 [Sorghum bicolor]
gi|241918438|gb|EER91582.1| hypothetical protein SORBIDRAFT_01g021297 [Sorghum bicolor]
Length = 218
Score = 143 bits (361), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 67/157 (42%), Positives = 104/157 (66%), Gaps = 2/157 (1%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGA 104
+ N+V + ++ C L+L+ IAL N EY + V M++R+P TTA +++SGK+ CTGA
Sbjct: 43 LQNIVSTVNLDCQLDLKMIALQARNAEYNPKRFAAVIMRIREPKTTALVFASGKMVCTGA 102
Query: 105 TSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKHRA-AEYE 163
SE+ SK+AAR+YAR +Q+LG+ A+F +F++ N++G+C + F IR+ + H A + YE
Sbjct: 103 KSEEHSKLAARKYARIVQKLGYPAKFKDFKIQNMVGSCDVKFPIRLEGLAFSHGAFSNYE 162
Query: 164 PELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
PEL PG+ YR+ PK L IF +G I +T +I
Sbjct: 163 PELFPGLIYRMKNPKIVLLIFVSGKIVLTGAKVREEI 199
>gi|428176634|gb|EKX45518.1| hypothetical protein GUITHDRAFT_152740 [Guillardia theta CCMP2712]
Length = 212
Score = 143 bits (361), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 67/173 (38%), Positives = 110/173 (63%), Gaps = 8/173 (4%)
Query: 38 HDPEVDII------INNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTT 90
+D ++D+ + N+V + ++ C LNL+ I L N EY + V M++R+P TT
Sbjct: 16 YDNDLDMTNGITPSLQNIVATVNLNCSLNLKTITLQARNAEYNPKRFAAVIMRIREPKTT 75
Query: 91 ASIWSSGKITCTGATSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRI 150
A I++SGK+ CTGA SE+ +++A+R++AR +Q+LGF A+FT F++ N++G+C + F IR+
Sbjct: 76 ALIFASGKMVCTGAKSEESARLASRKFARIIQKLGFSAKFTEFKIQNIVGSCDVRFPIRL 135
Query: 151 LQFSEKHR-AAEYEPELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKIPV 202
+ + H+ YEPEL PG+ YR+ PK L IF +G I +T + I +
Sbjct: 136 EKLAYAHQNYCSYEPELFPGLIYRMLVPKVVLLIFVSGKIVLTGAKNKRDIDI 188
>gi|159465587|ref|XP_001691004.1| global transcription factor [Chlamydomonas reinhardtii]
gi|158279690|gb|EDP05450.1| global transcription factor [Chlamydomonas reinhardtii]
Length = 325
Score = 143 bits (361), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 69/166 (41%), Positives = 105/166 (63%), Gaps = 2/166 (1%)
Query: 37 AHDPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWS 95
AH + + NVV + ++ L+L++IA++ N EY + V M++R+P TTA I++
Sbjct: 24 AHVSGIKPQLQNVVATVNLGTKLDLKEIAMHARNAEYNPKRFAAVIMRIREPKTTALIFA 83
Query: 96 SGKITCTGATSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSE 155
SGK+ CTGA SED S+ AARRYA+ +Q+LGF A F F++ N++G+C + F IR+ +
Sbjct: 84 SGKMVCTGAKSEDDSRTAARRYAKIVQKLGFPATFKEFKIQNIVGSCDVKFPIRLEGLAY 143
Query: 156 KHRA-AEYEPELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
H A YEPEL PG+ YR+ +PK L IF +G + +T +I
Sbjct: 144 AHSLFASYEPELFPGLIYRMKQPKIVLLIFVSGKVVLTGAKTRGEI 189
>gi|366997981|ref|XP_003683727.1| hypothetical protein TPHA_0A02110 [Tetrapisispora phaffii CBS 4417]
gi|357522022|emb|CCE61293.1| hypothetical protein TPHA_0A02110 [Tetrapisispora phaffii CBS 4417]
Length = 244
Score = 143 bits (361), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 64/157 (40%), Positives = 105/157 (66%), Gaps = 2/157 (1%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGA 104
+ N+V + ++ C L+L+ +AL+ N E+ + V M++R+P TTA I++SGK+ TGA
Sbjct: 71 LQNIVATVNLGCRLDLKTVALHARNAEFNPKRFAAVIMRIREPKTTALIFASGKMVVTGA 130
Query: 105 TSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKHRA-AEYE 163
SED SK+A+R+YAR +Q++GF A+FT+F++ N++G+C + F IR+ + H + YE
Sbjct: 131 KSEDDSKLASRKYARIIQKIGFAAKFTDFKIQNIVGSCDVKFPIRLEGLAFSHGTFSSYE 190
Query: 164 PELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
PEL PG+ YR+ +PK L +F +G I +T +I
Sbjct: 191 PELFPGLIYRMVKPKIVLLVFVSGKIVLTGAKQREEI 227
>gi|164429967|gb|ABY55311.1| TATA-binding protein 1 [Gallus gallus]
Length = 302
Score = 143 bits (361), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 72/185 (38%), Positives = 114/185 (61%), Gaps = 5/185 (2%)
Query: 18 PPPTQTVVPIQNHAPPQPPAHDPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYR-RE 76
P P + PI P P + + + N+V + ++ C L+L+ IAL N EY +
Sbjct: 103 PSPMTPMTPI---TPATPASESSGIVPQLQNIVSTVNLGCKLDLKTIALRARNAEYDPKR 159
Query: 77 NGMVTMKLRKPYTTASIWSSGKITCTGATSEDQSKIAARRYARCLQRLGFKARFTNFRVV 136
V M++R+P TTA I+SSGK+ CTGA SE+QS++AAR+YAR +++LGF A+F +F++
Sbjct: 160 FAAVIMRIREPRTTALIFSSGKMVCTGAKSEEQSRLAARKYARVVRKLGFPAKFLDFKIQ 219
Query: 137 NVLGTCSMPFAIRILQFSEKHRA-AEYEPELHPGVTYRITRPKATLKIFSTGGITVTACN 195
N++G+C + F IR+ H+ + YEPEL PG+ YR+ +P+ L IF +G + +T
Sbjct: 220 NMVGSCDVKFPIRLEGLVLTHQQFSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLTGAK 279
Query: 196 DSNKI 200
+I
Sbjct: 280 VRAEI 284
>gi|54696182|gb|AAV38463.1| TATA box binding protein [Homo sapiens]
Length = 336
Score = 143 bits (361), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 67/157 (42%), Positives = 105/157 (66%), Gaps = 2/157 (1%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGA 104
+ N+V + ++ C L+L+ IAL N EY + V M++R+P TTA I+SSGK+ CTGA
Sbjct: 162 LQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 221
Query: 105 TSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKHRA-AEYE 163
SE+QS++AAR+YAR +Q+LGF A+F +F++ N++G+C + F IR+ H+ + YE
Sbjct: 222 KSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGPVLTHQQFSSYE 281
Query: 164 PELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
PEL PG+ YR+ +P+ L IF +G + +T +I
Sbjct: 282 PELFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRAEI 318
>gi|19115478|ref|NP_594566.1| TATA-binding protein (TBP) [Schizosaccharomyces pombe 972h-]
gi|135639|sp|P17871.1|TBP_SCHPO RecName: Full=TATA-box-binding protein; AltName: Full=TATA
sequence-binding protein; Short=TBP; AltName:
Full=TATA-binding factor; AltName: Full=TATA-box factor;
AltName: Full=Transcription initiation factor TFIID TBP
subunit
gi|295936|emb|CAA37494.1| TFIID [Schizosaccharomyces pombe]
gi|1044934|emb|CAA91430.1| transcription initiation factor tfiid [Schizosaccharomyces pombe]
gi|6723895|emb|CAB66471.1| TATA-binding protein (TBP) [Schizosaccharomyces pombe]
gi|226987|prf||1612348A transcription factor IID
Length = 231
Score = 143 bits (360), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 64/151 (42%), Positives = 101/151 (66%), Gaps = 2/151 (1%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGA 104
+ N+V + ++ C L+L+ IAL+ N EY + V M++R+P +TA I++SGK+ G
Sbjct: 58 LQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKSTALIFASGKMVVLGG 117
Query: 105 TSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKHRA-AEYE 163
SED SK+A+R+YAR +Q+LGF A+FT+F++ N++G+C + F IR+ + H + YE
Sbjct: 118 KSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDVKFPIRLEGLAYSHGTFSSYE 177
Query: 164 PELHPGVTYRITRPKATLKIFSTGGITVTAC 194
PEL PG+ YR+ +PK L IF +G I +T
Sbjct: 178 PELFPGLIYRMVKPKVVLLIFVSGKIVLTGA 208
>gi|443925999|gb|ELU44748.1| transcription initiation factor TFIID-1 [Rhizoctonia solani AG-1
IA]
Length = 985
Score = 143 bits (360), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 69/162 (42%), Positives = 106/162 (65%), Gaps = 4/162 (2%)
Query: 38 HDPEVDIIIN--NVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIW 94
H VD I+ N+V + ++ C L+L+ IAL+ N EY + V M++R P TTA I+
Sbjct: 61 HITAVDGIVPTLNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIRDPKTTALIF 120
Query: 95 SSGKITCTGATSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFS 154
+SGK+ TGA SED S++A+R+YAR +Q+LGF A+F+ F++ N++G+C + F IR+ +
Sbjct: 121 ASGKMVVTGAKSEDDSRLASRKYARIVQKLGFDAKFSEFKIQNIVGSCDVKFPIRLEGLA 180
Query: 155 EKH-RAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTACN 195
H + + YEPEL PG+ YR+ +PK L IF +G I +T
Sbjct: 181 YSHGQFSSYEPELFPGLIYRMLKPKVVLLIFVSGKIVLTGAK 222
>gi|297479762|ref|XP_002690959.1| PREDICTED: TATA box binding protein like 2 [Bos taurus]
gi|296483126|tpg|DAA25241.1| TPA: TATA box binding protein like 2-like [Bos taurus]
Length = 341
Score = 143 bits (360), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 66/157 (42%), Positives = 104/157 (66%), Gaps = 2/157 (1%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGA 104
+ N+V + ++ C L+L++IAL+ N EY + V M++R+P TTA I+SSGK+ CTGA
Sbjct: 168 LQNIVSTVNLACKLDLKKIALHAKNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 227
Query: 105 TSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKHRA-AEYE 163
SE+QS++AAR+YAR +Q+LGF ARF +F + N++ +C + F I + H+ + YE
Sbjct: 228 KSEEQSRLAARKYARVVQKLGFPARFLDFTIQNMVASCDVRFPISLEGLVLTHQQFSSYE 287
Query: 164 PELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
PEL PG+ YR+ +P+ L IF +G + +T + I
Sbjct: 288 PELFPGLIYRMVKPRIVLLIFVSGKVVLTGAKKRSDI 324
>gi|440897977|gb|ELR49561.1| TATA box-binding protein-like protein 2, partial [Bos grunniens
mutus]
Length = 374
Score = 143 bits (360), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 66/157 (42%), Positives = 104/157 (66%), Gaps = 2/157 (1%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGA 104
+ N+V + ++ C L+L++IAL+ N EY + V M++R+P TTA I+SSGK+ CTGA
Sbjct: 201 LQNIVSTVNLACKLDLKKIALHAKNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 260
Query: 105 TSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKHRA-AEYE 163
SE+QS++AAR+YAR +Q+LGF ARF +F + N++ +C + F I + H+ + YE
Sbjct: 261 KSEEQSRLAARKYARVVQKLGFPARFLDFTIQNMVASCDVRFPISLEGLVLTHQQFSSYE 320
Query: 164 PELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
PEL PG+ YR+ +P+ L IF +G + +T + I
Sbjct: 321 PELFPGLIYRMVKPRIVLLIFVSGKVVLTGAKKRSDI 357
>gi|194670970|ref|XP_871896.3| PREDICTED: TATA box binding protein like 2 [Bos taurus]
Length = 377
Score = 143 bits (360), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 66/157 (42%), Positives = 104/157 (66%), Gaps = 2/157 (1%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGA 104
+ N+V + ++ C L+L++IAL+ N EY + V M++R+P TTA I+SSGK+ CTGA
Sbjct: 204 LQNIVSTVNLACKLDLKKIALHAKNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 263
Query: 105 TSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKHRA-AEYE 163
SE+QS++AAR+YAR +Q+LGF ARF +F + N++ +C + F I + H+ + YE
Sbjct: 264 KSEEQSRLAARKYARVVQKLGFPARFLDFTIQNMVASCDVRFPISLEGLVLTHQQFSSYE 323
Query: 164 PELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
PEL PG+ YR+ +P+ L IF +G + +T + I
Sbjct: 324 PELFPGLIYRMVKPRIVLLIFVSGKVVLTGAKKRSDI 360
>gi|426234189|ref|XP_004011082.1| PREDICTED: TATA box-binding protein-like protein 2 [Ovis aries]
Length = 443
Score = 142 bits (359), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 66/157 (42%), Positives = 104/157 (66%), Gaps = 2/157 (1%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGA 104
+ N+V + ++ C L+L++IAL+ N EY + V M++R+P TTA I+SSGK+ CTGA
Sbjct: 270 LQNIVSTVNLACKLDLKKIALHAKNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 329
Query: 105 TSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKHRA-AEYE 163
SE+QS++AAR+YAR +Q+LGF ARF +F + N++ +C + F I + H+ + YE
Sbjct: 330 KSEEQSRLAARKYARVVQKLGFPARFLDFTIQNMVASCDVRFPISLEGLVLTHQQFSSYE 389
Query: 164 PELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
PEL PG+ YR+ +P+ L IF +G + +T + I
Sbjct: 390 PELFPGLIYRMVKPRIVLLIFVSGKVVLTGAKKRSDI 426
>gi|15826400|pdb|1JFI|C Chain C, Crystal Structure Of The Nc2-Tbp-Dna Ternary Complex
Length = 185
Score = 142 bits (359), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 67/157 (42%), Positives = 105/157 (66%), Gaps = 2/157 (1%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGA 104
+ N+V + ++ C L+L+ IAL N EY + V M++R+P TTA I+SSGK+ CTGA
Sbjct: 11 LQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 70
Query: 105 TSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKHRA-AEYE 163
SE+QS++AAR+YAR +Q+LGF A+F +F++ N++G+C + F IR+ H+ + YE
Sbjct: 71 KSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSYE 130
Query: 164 PELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
PEL PG+ YR+ +P+ L IF +G + +T +I
Sbjct: 131 PELFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRAEI 167
>gi|55583664|gb|AAV53354.1| TATA-box binding protein [Volvox carteri f. nagariensis]
Length = 340
Score = 142 bits (359), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 67/157 (42%), Positives = 102/157 (64%), Gaps = 2/157 (1%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGA 104
+ NVV + ++ L+L++IA++ N EY + V M++R+P TTA I++SGK+ CTGA
Sbjct: 37 LQNVVATVNLGTKLDLKEIAMHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVCTGA 96
Query: 105 TSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKHRA-AEYE 163
SED S+ AARRYA+ +Q+LGF A F F++ N++G+C + F IR+ + H A YE
Sbjct: 97 KSEDDSRTAARRYAKIVQKLGFPATFKEFKIQNIVGSCDVKFPIRLEGLAYAHSLFASYE 156
Query: 164 PELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
PEL PG+ YR+ +PK L IF +G + +T +I
Sbjct: 157 PELFPGLIYRMKQPKIVLLIFVSGKVVLTGAKTRYEI 193
>gi|38492542|pdb|1NVP|A Chain A, Human TfiiaTBPDNA COMPLEX
Length = 181
Score = 142 bits (359), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 67/157 (42%), Positives = 105/157 (66%), Gaps = 2/157 (1%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGA 104
+ N+V + ++ C L+L+ IAL N EY + V M++R+P TTA I+SSGK+ CTGA
Sbjct: 7 LQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 66
Query: 105 TSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKHRA-AEYE 163
SE+QS++AAR+YAR +Q+LGF A+F +F++ N++G+C + F IR+ H+ + YE
Sbjct: 67 KSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSYE 126
Query: 164 PELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
PEL PG+ YR+ +P+ L IF +G + +T +I
Sbjct: 127 PELFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRAEI 163
>gi|297478910|ref|XP_002690449.1| PREDICTED: TATA-box-binding protein, partial [Bos taurus]
gi|296483816|tpg|DAA25931.1| TPA: TATA box binding protein-like [Bos taurus]
Length = 227
Score = 142 bits (359), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 71/167 (42%), Positives = 108/167 (64%), Gaps = 5/167 (2%)
Query: 34 QPPAHDPEVDIIIN---NVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYT 89
QP AH + N N+V + ++ C L+L+ IAL N EY + V M++R+P T
Sbjct: 57 QPDAHPLPHGAVHNTTENIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRT 116
Query: 90 TASIWSSGKITCTGATSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIR 149
TA I+SSGK+ CTGA SE+QS++AAR+YAR +Q+LGF A+F +F++ N++G+C + F IR
Sbjct: 117 TALIFSSGKMVCTGAKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIR 176
Query: 150 ILQFSEKHRA-AEYEPELHPGVTYRITRPKATLKIFSTGGITVTACN 195
+ H+ + YEPEL PG+ YR+ +P+ L IF +G + +T
Sbjct: 177 LEGLVLTHQQFSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLTGAK 223
>gi|6980708|pdb|1C9B|B Chain B, Crystal Structure Of A Human Tbp Core Domain-Human Tfiib
Core Domain Complex Bound To An Extended, Modified
Adenoviral Major Late Promoter (Admlp)
gi|6980710|pdb|1C9B|F Chain F, Crystal Structure Of A Human Tbp Core Domain-Human Tfiib
Core Domain Complex Bound To An Extended, Modified
Adenoviral Major Late Promoter (Admlp)
gi|6980712|pdb|1C9B|J Chain J, Crystal Structure Of A Human Tbp Core Domain-Human Tfiib
Core Domain Complex Bound To An Extended, Modified
Adenoviral Major Late Promoter (Admlp)
gi|6980714|pdb|1C9B|N Chain N, Crystal Structure Of A Human Tbp Core Domain-Human Tfiib
Core Domain Complex Bound To An Extended, Modified
Adenoviral Major Late Promoter (Admlp)
gi|6980716|pdb|1C9B|R Chain R, Crystal Structure Of A Human Tbp Core Domain-Human Tfiib
Core Domain Complex Bound To An Extended, Modified
Adenoviral Major Late Promoter (Admlp)
Length = 180
Score = 142 bits (359), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 66/152 (43%), Positives = 103/152 (67%), Gaps = 2/152 (1%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGA 104
+ N+V + ++ C L+L+ IAL N EY + V M++R+P TTA I+SSGK+ CTGA
Sbjct: 8 LQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 67
Query: 105 TSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKHRA-AEYE 163
SE+QS++AAR+YAR +Q+LGF A+F +F++ N++G+C + F IR+ H+ + YE
Sbjct: 68 KSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSYE 127
Query: 164 PELHPGVTYRITRPKATLKIFSTGGITVTACN 195
PEL PG+ YR+ +P+ L IF +G + +T
Sbjct: 128 PELFPGLIYRMIKPRIVLLIFVSGKVVLTGAK 159
>gi|1827869|pdb|1TGH|A Chain A, Tata Binding Protein (Tbp)DNA COMPLEX
Length = 185
Score = 142 bits (358), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 66/152 (43%), Positives = 103/152 (67%), Gaps = 2/152 (1%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGA 104
+ N+V + ++ C L+L+ IAL N EY + V M++R+P TTA I+SSGK+ CTGA
Sbjct: 11 LQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 70
Query: 105 TSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKHRA-AEYE 163
SE+QS++AAR+YAR +Q+LGF A+F +F++ N++G+C + F IR+ H+ + YE
Sbjct: 71 KSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSYE 130
Query: 164 PELHPGVTYRITRPKATLKIFSTGGITVTACN 195
PEL PG+ YR+ +P+ L IF +G + +T
Sbjct: 131 PELFPGLIYRMIKPRIVLLIFVSGKVVLTGAK 162
>gi|348539536|ref|XP_003457245.1| PREDICTED: TATA box-binding protein-like protein 2-like
[Oreochromis niloticus]
Length = 319
Score = 142 bits (358), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 67/157 (42%), Positives = 104/157 (66%), Gaps = 2/157 (1%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGA 104
+ N+V + ++ C L+L+ IAL N EY + V M++R+P TTA I+SSGK+ CTGA
Sbjct: 146 LQNIVSTVNLGCPLDLKFIALQARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 205
Query: 105 TSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKHRA-AEYE 163
SE+QS++AAR+YAR +Q+LGF ARF F++ N++ +C + F IR+ H+ + YE
Sbjct: 206 KSEEQSRLAARKYARVVQKLGFPARFLEFKIQNMVASCDVCFPIRLEGLVLTHQQFSSYE 265
Query: 164 PELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
PEL PG+ YR+ +P+ L IF +G + +T + +I
Sbjct: 266 PELFPGLIYRMVKPRIVLLIFVSGKVVLTGAKERAEI 302
>gi|33323635|gb|AAQ07596.1|AF503449_1 TATA-binding protein [Danio rerio]
Length = 302
Score = 142 bits (358), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 70/182 (38%), Positives = 112/182 (61%), Gaps = 2/182 (1%)
Query: 21 TQTVVPIQNHAPPQPPAHDPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGM 79
T + P+ P P + + + N+V + ++ C L+L+ IAL N EY +
Sbjct: 103 TTPLTPMTPITPATPASESSGIVPQLQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAA 162
Query: 80 VTMKLRKPYTTASIWSSGKITCTGATSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVL 139
V M++R+P TTA I+SSGK+ TGA SE+QS++AAR+YAR +Q+LGF A+F +F++ N++
Sbjct: 163 VIMRIREPRTTALIFSSGKMVGTGAKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMV 222
Query: 140 GTCSMPFAIRILQFSEKHRA-AEYEPELHPGVTYRITRPKATLKIFSTGGITVTACNDSN 198
G+C + F IR+ H+ + YEPEL PG+ YR+ +P+ L IF +G + +T
Sbjct: 223 GSCDVKFPIRLEGLVLTHQQFSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRG 282
Query: 199 KI 200
+I
Sbjct: 283 EI 284
>gi|378401306|emb|CBK13156.1| TATA binding protein, partial [Oreochromis mossambicus]
Length = 247
Score = 142 bits (358), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 69/173 (39%), Positives = 109/173 (63%), Gaps = 2/173 (1%)
Query: 21 TQTVVPIQNHAPPQPPAHDPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGM 79
T + P+ P P + + + N+V + ++ C L+L+ IAL N EY +
Sbjct: 75 TTPLTPMTPITPATPASETSGIVPQLQNIVSTVNLGCKLDLKTIALRARNAEYDPKRFAA 134
Query: 80 VTMKLRKPYTTASIWSSGKITCTGATSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVL 139
V M++R+P TTA I+SSGK+ CTGA SE+QS++AAR+YAR +Q+LGF A+F +F++ N++
Sbjct: 135 VIMRIREPRTTALIFSSGKMVCTGAKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMV 194
Query: 140 GTCSMPFAIRILQFSEKHRA-AEYEPELHPGVTYRITRPKATLKIFSTGGITV 191
G C + F IR+ H+ + YEPEL PG+ YR+ +P+ L IF +G + +
Sbjct: 195 GNCDVKFPIRLEGLVLTHQQFSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVL 247
>gi|74095979|ref|NP_001027845.1| TATA box-binding protein-like protein 2 [Takifugu rubripes]
gi|82127187|sp|Q6SJ94.1|TBPL2_FUGRU RecName: Full=TATA box-binding protein-like protein 2;
Short=TBP-like protein 2; AltName: Full=TATA box-binding
protein-related factor 3; Short=TBP-related factor 3
gi|38569213|gb|AAR24283.1| TBP-related factor 3 [Takifugu rubripes]
gi|148910851|tpg|DAA06036.1| TPA_inf: TATA box binding protein-like 2 [Takifugu rubripes]
Length = 322
Score = 142 bits (357), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 67/157 (42%), Positives = 105/157 (66%), Gaps = 2/157 (1%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGA 104
+ N+V + ++ C L+L+ IAL N EY + V M++R+P TTA I+SSGK+ CTGA
Sbjct: 149 LQNIVSTVNLGCPLDLKFIALQARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 208
Query: 105 TSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKHRA-AEYE 163
SE+QS++AAR+YAR +Q+LGF ARF +F++ N++ +C + F IR+ H+ + YE
Sbjct: 209 KSEEQSRLAARKYARVVQKLGFPARFMDFKIQNMVASCDVCFPIRLEGLVLTHQQFSSYE 268
Query: 164 PELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
PEL PG+ YR+ +P+ L IF +G + +T + +I
Sbjct: 269 PELFPGLIYRMVKPRIVLLIFVSGKVVLTGAKERAEI 305
>gi|71012922|ref|XP_758541.1| transcription initiation factor TFIID-1 [Ustilago maydis 521]
gi|46098199|gb|EAK83432.1| TF21_MAIZE Transcription initiation factor TFIID-1 (TATA-box factor
1) (TATA sequence-binding protein 1) (TBP-1) [Ustilago
maydis 521]
Length = 189
Score = 142 bits (357), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 65/157 (41%), Positives = 104/157 (66%), Gaps = 2/157 (1%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGA 104
+ N+V + ++ L+L+ IAL+ N EY + V M++R+P TTA I++SGK+ TGA
Sbjct: 16 LQNIVATVNLEVRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGA 75
Query: 105 TSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKHRA-AEYE 163
SED S++A+R+YAR +Q+LGF+A+F+ F++ N++G+C + F IR+ + H + YE
Sbjct: 76 KSEDDSRLASRKYARIIQKLGFEAKFSEFKIQNIVGSCDVRFPIRLEGLAYSHGVYSSYE 135
Query: 164 PELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
PEL PG+ YR+ +PK L IF +G I +T +I
Sbjct: 136 PELFPGLIYRMVKPKVVLLIFVSGKIVLTGAKVREEI 172
>gi|353234891|emb|CCA66911.1| probable TATA-box-binding factor TBP [Piriformospora indica DSM
11827]
Length = 297
Score = 142 bits (357), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 65/158 (41%), Positives = 104/158 (65%), Gaps = 2/158 (1%)
Query: 45 IINNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTG 103
I+ N+V + ++ L+L+ IA++ N EY + V M++R+P TTA I++SG++ TG
Sbjct: 123 ILQNIVATVNLGTRLDLKTIAMHARNAEYNPKRFAAVIMRIREPKTTALIFASGQMVVTG 182
Query: 104 ATSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKH-RAAEY 162
A SED S++A+R+YAR +Q+LGF A+FT F++ N++G+C + F IR+ H + + Y
Sbjct: 183 AKSEDDSRLASRKYARIIQKLGFDAKFTEFKIQNIVGSCDVKFPIRLEGLHYGHGKFSSY 242
Query: 163 EPELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
EPEL PG+ YR+ +PK L IF +G I +T +I
Sbjct: 243 EPELFPGLIYRMIKPKVVLLIFVSGKIVLTGAKVREEI 280
>gi|47214810|emb|CAF89637.1| unnamed protein product [Tetraodon nigroviridis]
Length = 309
Score = 141 bits (356), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 67/157 (42%), Positives = 105/157 (66%), Gaps = 2/157 (1%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGA 104
+ N+V + ++ C L+L+ IAL N EY + V M++R+P TTA I+SSGK+ CTGA
Sbjct: 136 LQNIVSTVNLGCPLDLKFIALQARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 195
Query: 105 TSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKHRA-AEYE 163
SE+QS++AAR+YAR +Q+LGF ARF +F++ N++ +C + F IR+ H+ + YE
Sbjct: 196 KSEEQSRLAARKYARVVQKLGFPARFLDFKIQNMVASCDVCFPIRLEGLVLTHQQFSSYE 255
Query: 164 PELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
PEL PG+ YR+ +P+ L IF +G + +T + +I
Sbjct: 256 PELFPGLIYRMVKPRIVLLIFVSGKVVLTGAKERAEI 292
>gi|343427608|emb|CBQ71135.1| probable TATA-box-binding factor TBP [Sporisorium reilianum SRZ2]
Length = 241
Score = 141 bits (356), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 65/157 (41%), Positives = 104/157 (66%), Gaps = 2/157 (1%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGA 104
+ N+V + ++ L+L+ IAL+ N EY + V M++R+P TTA I++SGK+ TGA
Sbjct: 68 LQNIVATVNLEVRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGA 127
Query: 105 TSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKHRA-AEYE 163
SED S++A+R+YAR +Q+LGF+A+F+ F++ N++G+C + F IR+ + H + YE
Sbjct: 128 KSEDDSRLASRKYARIIQKLGFEAKFSEFKIQNIVGSCDVRFPIRLEGLAYSHGVYSSYE 187
Query: 164 PELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
PEL PG+ YR+ +PK L IF +G I +T +I
Sbjct: 188 PELFPGLIYRMVKPKVVLLIFVSGKIVLTGAKVREEI 224
>gi|89267100|emb|CAJ41964.1| TF21_MAIZE Transcription initiation factor TFIID-1 [Ustilago
hordei]
gi|388856434|emb|CCF49983.1| probable TATA-box-binding factor TBP [Ustilago hordei]
Length = 239
Score = 141 bits (356), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 64/151 (42%), Positives = 102/151 (67%), Gaps = 2/151 (1%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGA 104
+ N+V + ++ L+L+ IAL+ N EY + V M++R+P TTA I++SGK+ TGA
Sbjct: 66 LQNIVATVNLEVRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGA 125
Query: 105 TSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKHRA-AEYE 163
SED S++A+R+YAR +Q+LGF+A+F+ F++ N++G+C + F IR+ + H + YE
Sbjct: 126 KSEDDSRLASRKYARIIQKLGFEAKFSEFKIQNIVGSCDVRFPIRLEGLAYSHGVYSSYE 185
Query: 164 PELHPGVTYRITRPKATLKIFSTGGITVTAC 194
PEL PG+ YR+ +PK L IF +G I +T
Sbjct: 186 PELFPGLIYRMVKPKVVLLIFVSGKIVLTGA 216
>gi|328870425|gb|EGG18799.1| TATA-binding protein [Dictyostelium fasciculatum]
Length = 236
Score = 141 bits (356), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 65/158 (41%), Positives = 101/158 (63%), Gaps = 2/158 (1%)
Query: 45 IINNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTG 103
++ N+V + ++ LNL+ IAL +N EY + V M++R P TTA I+ SGK+ CTG
Sbjct: 50 VLQNIVSTVNMGTELNLKTIALGALNAEYNPKRFAAVIMRIRDPKTTALIFKSGKMVCTG 109
Query: 104 ATSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKHRA-AEY 162
A SE+ SK+AAR+YAR +Q+L F A F +F++ N++G+C + F IR+ + H+ Y
Sbjct: 110 AKSEEASKLAARKYARIIQKLDFPAIFKDFKIQNIVGSCDVKFPIRLENLNNAHKVFTNY 169
Query: 163 EPELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
EPE+ PG+ Y++ +PK L IF +G I +T +I
Sbjct: 170 EPEIFPGLIYKMIQPKVVLLIFVSGKIVLTGAKVREEI 207
>gi|443895156|dbj|GAC72502.1| hypothetical protein PANT_7d00127 [Pseudozyma antarctica T-34]
Length = 238
Score = 141 bits (355), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 64/151 (42%), Positives = 102/151 (67%), Gaps = 2/151 (1%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGA 104
+ N+V + ++ L+L+ IAL+ N EY + V M++R+P TTA I++SGK+ TGA
Sbjct: 65 LQNIVATVNLEVRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGA 124
Query: 105 TSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKHRA-AEYE 163
SED S++A+R+YAR +Q+LGF+A+F+ F++ N++G+C + F IR+ + H + YE
Sbjct: 125 KSEDDSRLASRKYARIIQKLGFEAKFSEFKIQNIVGSCDVRFPIRLEGLAYSHGVYSSYE 184
Query: 164 PELHPGVTYRITRPKATLKIFSTGGITVTAC 194
PEL PG+ YR+ +PK L IF +G I +T
Sbjct: 185 PELFPGLIYRMVKPKVVLLIFVSGKIVLTGA 215
>gi|1174643|sp|P46272.1|TBP_ACECL RecName: Full=TATA-box-binding protein; AltName: Full=TATA
sequence-binding protein; Short=TBP; AltName:
Full=TATA-binding factor; AltName: Full=TATA-box factor;
AltName: Full=Transcription initiation factor TFIID TBP
subunit
gi|2654376|emb|CAA82267.1| TATA box binding protein [Acetabularia peniculus]
Length = 191
Score = 141 bits (355), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 66/157 (42%), Positives = 102/157 (64%), Gaps = 2/157 (1%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGA 104
+ NVV + ++ C L L++IA+ N EY + V M++R P TTA I+ SGK+ CTGA
Sbjct: 18 LQNVVSTVNLGCTLELKEIAMQARNAEYNPKRFAAVIMRIRDPKTTALIFGSGKMVCTGA 77
Query: 105 TSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKHRA-AEYE 163
SE S+ AAR+YA+ +Q+LGF A+FT F++ N++G+C + F IR+ + +H+ YE
Sbjct: 78 KSEQDSRTAARKYAKIVQKLGFPAKFTEFKIQNIVGSCDVKFPIRMEPLAYQHQQFCSYE 137
Query: 164 PELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
PEL PG+ YR+ +PK L IF +G + +T + +I
Sbjct: 138 PELFPGLIYRMLQPKIVLLIFVSGKVVLTGAKERTEI 174
>gi|331213275|ref|XP_003319319.1| TATA-box-binding protein [Puccinia graminis f. sp. tritici CRL
75-36-700-3]
gi|309298309|gb|EFP74900.1| TATA-box-binding protein [Puccinia graminis f. sp. tritici CRL
75-36-700-3]
Length = 209
Score = 141 bits (355), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 65/146 (44%), Positives = 100/146 (68%), Gaps = 2/146 (1%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGA 104
+ N+V + ++ C L+L+ IAL+ N EY + V M++R+P TTA I++SGK+ TGA
Sbjct: 63 LQNIVATVNLECRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGA 122
Query: 105 TSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKH-RAAEYE 163
SED S++AAR+YAR +Q+LGF+A+FT F++ N++G+C + F IR+ + H + YE
Sbjct: 123 KSEDDSRLAARKYARIVQKLGFEAKFTEFKIQNIVGSCDVRFPIRLEGLAYNHGHFSSYE 182
Query: 164 PELHPGVTYRITRPKATLKIFSTGGI 189
PEL PG+ YR+ + K L IF +G I
Sbjct: 183 PELFPGLIYRMNKQKVVLLIFVSGKI 208
>gi|157277622|emb|CAL47127.1| trf2 protein [Drosophila simulans]
gi|157277624|emb|CAL47128.1| trf2 protein [Drosophila simulans]
gi|157277626|emb|CAL47129.1| trf2 protein [Drosophila simulans]
gi|157277628|emb|CAL47130.1| trf2 protein [Drosophila simulans]
gi|157277630|emb|CAL47131.1| trf2 protein [Drosophila simulans]
gi|157277632|emb|CAL47132.1| trf2 protein [Drosophila simulans]
gi|157277634|emb|CAL47133.1| trf2 protein [Drosophila simulans]
gi|157277636|emb|CAL47134.1| trf2 protein [Drosophila simulans]
gi|157277638|emb|CAL47135.1| trf2 protein [Drosophila simulans]
gi|157277640|emb|CAL47136.1| trf2 protein [Drosophila simulans]
gi|157277642|emb|CAL47137.1| trf2 protein [Drosophila simulans]
gi|157277644|emb|CAL47138.1| trf2 protein [Drosophila simulans]
gi|157277646|emb|CAL47139.1| trf2 protein [Drosophila simulans]
gi|157277648|emb|CAL47140.1| trf2 protein [Drosophila simulans]
gi|157277650|emb|CAL47141.1| trf2 protein [Drosophila simulans]
gi|157277652|emb|CAL47142.1| trf2 protein [Drosophila simulans]
gi|157277654|emb|CAL47143.1| trf2 protein [Drosophila simulans]
gi|157277656|emb|CAL47144.1| trf2 protein [Drosophila simulans]
gi|157277658|emb|CAL47145.1| trf2 protein [Drosophila simulans]
gi|157277660|emb|CAL47146.1| trf2 protein [Drosophila simulans]
gi|157277662|emb|CAL47147.1| trf2 protein [Drosophila simulans]
gi|157277664|emb|CAL47148.1| trf2 protein [Drosophila simulans]
gi|157277666|emb|CAL47149.1| trf2 protein [Drosophila simulans]
gi|157277668|emb|CAL47150.1| trf2 protein [Drosophila simulans]
gi|157277670|emb|CAL47151.1| trf2 protein [Drosophila simulans]
gi|317418075|emb|CBN74043.1| TATA box binding protein-related factor 2 [Drosophila simulans]
gi|317418077|emb|CBN74046.1| TATA box binding protein-related factor 2 [Drosophila simulans]
gi|317418079|emb|CBN74054.1| TATA box binding protein-related factor 2 [Drosophila simulans]
gi|317418081|emb|CBN74061.1| TATA box binding protein-related factor 2 [Drosophila simulans]
gi|317418083|emb|CBN74066.1| TATA box binding protein-related factor 2 [Drosophila simulans]
gi|317418085|emb|CBN74068.1| TATA box binding protein-related factor 2 [Drosophila simulans]
gi|317418087|emb|CBN74069.1| TATA box binding protein-related factor 2 [Drosophila simulans]
gi|317418089|emb|CBN74072.1| TATA box binding protein-related factor 2 [Drosophila simulans]
gi|317418091|emb|CBN74076.1| TATA box binding protein-related factor 2 [Drosophila simulans]
gi|317418093|emb|CBN74087.1| TATA box binding protein-related factor 2 [Drosophila simulans]
gi|317418095|emb|CBN74094.1| TATA box binding protein-related factor 2 [Drosophila simulans]
gi|317418097|emb|CBN74098.1| TATA box binding protein-related factor 2 [Drosophila simulans]
gi|317418099|emb|CBN74102.1| TATA box binding protein-related factor 2 [Drosophila simulans]
gi|317418101|emb|CBN74103.1| TATA box binding protein-related factor 2 [Drosophila simulans]
gi|317418103|emb|CBN74104.1| TATA box binding protein-related factor 2 [Drosophila simulans]
gi|317418105|emb|CBN74105.1| TATA box binding protein-related factor 2 [Drosophila simulans]
gi|317418107|emb|CBN74106.1| TATA box binding protein-related factor 2 [Drosophila simulans]
gi|317418109|emb|CBN74107.1| TATA box binding protein-related factor 2 [Drosophila simulans]
gi|317418111|emb|CBN74108.1| TATA box binding protein-related factor 2 [Drosophila simulans]
gi|317418113|emb|CBN74109.1| TATA box binding protein-related factor 2 [Drosophila simulans]
gi|317418115|emb|CBN74110.1| TATA box binding protein-related factor 2 [Drosophila simulans]
gi|317418117|emb|CBN74111.1| TATA box binding protein-related factor 2 [Drosophila simulans]
gi|317418119|emb|CBN74112.1| TATA box binding protein-related factor 2 [Drosophila simulans]
gi|317418121|emb|CBN74113.1| TATA box binding protein-related factor 2 [Drosophila simulans]
gi|317418123|emb|CBN74114.1| TATA box binding protein-related factor 2 [Drosophila simulans]
gi|317418125|emb|CBN74115.1| TATA box binding protein-related factor 2 [Drosophila simulans]
gi|317418127|emb|CBN74116.1| TATA box binding protein-related factor 2 [Drosophila simulans]
gi|317418129|emb|CBN74117.1| TATA box binding protein-related factor 2 [Drosophila simulans]
gi|317418131|emb|CBN74118.1| TATA box binding protein-related factor 2 [Drosophila simulans]
gi|317418133|emb|CBN74119.1| TATA box binding protein-related factor 2 [Drosophila simulans]
gi|317418135|emb|CBN74138.1| TATA box binding protein-related factor 2 [Drosophila simulans]
gi|317418137|emb|CBN74148.1| TATA box binding protein-related factor 2 [Drosophila simulans]
gi|317418139|emb|CBN74152.1| TATA box binding protein-related factor 2 [Drosophila simulans]
gi|317418141|emb|CBN74155.1| TATA box binding protein-related factor 2 [Drosophila simulans]
gi|317418143|emb|CBN74168.1| TATA box binding protein-related factor 2 [Drosophila simulans]
gi|317418145|emb|CBN74173.1| TATA box binding protein-related factor 2 [Drosophila simulans]
gi|317418147|emb|CBN74175.1| TATA box binding protein-related factor 2 [Drosophila simulans]
gi|317418149|emb|CBN74176.1| TATA box binding protein-related factor 2 [Drosophila simulans]
gi|317418151|emb|CBN74179.1| TATA box binding protein-related factor 2 [Drosophila simulans]
gi|317418153|emb|CBN74183.1| TATA box binding protein-related factor 2 [Drosophila simulans]
gi|317418155|emb|CBN74186.1| TATA box binding protein-related factor 2 [Drosophila simulans]
gi|317418157|emb|CBN74190.1| TATA box binding protein-related factor 2 [Drosophila simulans]
gi|317418159|emb|CBN74193.1| TATA box binding protein-related factor 2 [Drosophila simulans]
gi|317418161|emb|CBN74222.1| TATA box binding protein-related factor 2 [Drosophila simulans]
gi|317418163|emb|CBN74230.1| TATA box binding protein-related factor 2 [Drosophila simulans]
gi|317418165|emb|CBN74244.1| TATA box binding protein-related factor 2 [Drosophila simulans]
gi|317418167|emb|CBN74245.1| TATA box binding protein-related factor 2 [Drosophila simulans]
gi|317418169|emb|CBN74246.1| TATA box binding protein-related factor 2 [Drosophila simulans]
gi|317418171|emb|CBN74247.1| TATA box binding protein-related factor 2 [Drosophila simulans]
gi|317418173|emb|CBN74248.1| TATA box binding protein-related factor 2 [Drosophila simulans]
gi|317418175|emb|CBN74249.1| TATA box binding protein-related factor 2 [Drosophila simulans]
gi|317418177|emb|CBN74250.1| TATA box binding protein-related factor 2 [Drosophila simulans]
gi|317418179|emb|CBN74251.1| TATA box binding protein-related factor 2 [Drosophila simulans]
gi|317418181|emb|CBN74252.1| TATA box binding protein-related factor 2 [Drosophila simulans]
gi|317418183|emb|CBN74253.1| TATA box binding protein-related factor 2 [Drosophila simulans]
gi|317418185|emb|CBN74254.1| TATA box binding protein-related factor 2 [Drosophila simulans]
gi|317418187|emb|CBN74255.1| TATA box binding protein-related factor 2 [Drosophila simulans]
gi|317418189|emb|CBN74256.1| TATA box binding protein-related factor 2 [Drosophila simulans]
gi|440584980|emb|CCI79962.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440584982|emb|CCI79963.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440584984|emb|CCI79964.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440584986|emb|CCI79965.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440584988|emb|CCI79966.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440584990|emb|CCI79967.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440584992|emb|CCI79968.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440584994|emb|CCI79969.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440584996|emb|CCI79970.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440584998|emb|CCI79971.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440585000|emb|CCI79972.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440585002|emb|CCI79973.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440585004|emb|CCI79974.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440585006|emb|CCI79975.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440585008|emb|CCI79976.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440585010|emb|CCI79977.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440585012|emb|CCI79978.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440585014|emb|CCI79979.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440585016|emb|CCI79980.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440585018|emb|CCI79981.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440585020|emb|CCI79982.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440585022|emb|CCI79983.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440585024|emb|CCI79984.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440585026|emb|CCI79985.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440585028|emb|CCI79986.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440585030|emb|CCI79987.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440585032|emb|CCI79988.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440585034|emb|CCI79989.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440585036|emb|CCI79990.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440585038|emb|CCI79991.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440585040|emb|CCI79992.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440585042|emb|CCI79993.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440585044|emb|CCI79994.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440585046|emb|CCI79995.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440585048|emb|CCI79996.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440585050|emb|CCI79997.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440585052|emb|CCI79998.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440585054|emb|CCI79999.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440585056|emb|CCI80000.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440585058|emb|CCI80001.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440585060|emb|CCI80002.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440585062|emb|CCI80003.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440585064|emb|CCI80004.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440585066|emb|CCI80005.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440585068|emb|CCI80006.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440585070|emb|CCI80007.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440585072|emb|CCI80008.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440585074|emb|CCI80009.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440585076|emb|CCI80010.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440585078|emb|CCI80011.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440585080|emb|CCI80012.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440585082|emb|CCI80013.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440585084|emb|CCI80014.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440585086|emb|CCI80015.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440585088|emb|CCI80016.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440585090|emb|CCI80017.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440585092|emb|CCI80018.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440585094|emb|CCI80019.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440585096|emb|CCI80020.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440585098|emb|CCI80021.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440585100|emb|CCI80022.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440585102|emb|CCI80023.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440585104|emb|CCI80024.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440585106|emb|CCI80025.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440585108|emb|CCI80026.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440585110|emb|CCI80027.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440585112|emb|CCI80028.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440585114|emb|CCI80029.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440585116|emb|CCI80030.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440585118|emb|CCI80031.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440585120|emb|CCI80032.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440585122|emb|CCI80033.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440585124|emb|CCI80034.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440585126|emb|CCI80035.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440585128|emb|CCI80036.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440585130|emb|CCI80037.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440585132|emb|CCI80038.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440585134|emb|CCI80039.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440585136|emb|CCI80040.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440585138|emb|CCI80041.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440585140|emb|CCI80042.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440585142|emb|CCI80043.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440585144|emb|CCI80044.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440585146|emb|CCI80045.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440585148|emb|CCI80046.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440585150|emb|CCI80047.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440585152|emb|CCI80048.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440585154|emb|CCI80049.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440585156|emb|CCI80050.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440585158|emb|CCI80051.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440585160|emb|CCI80052.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440585162|emb|CCI80053.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440585164|emb|CCI80054.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440585166|emb|CCI80055.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440585168|emb|CCI80056.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440585170|emb|CCI80057.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440585172|emb|CCI80058.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440585174|emb|CCI80059.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440585176|emb|CCI80060.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440585178|emb|CCI80061.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440585180|emb|CCI80062.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440585182|emb|CCI80063.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440585184|emb|CCI80064.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440585186|emb|CCI80065.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440585188|emb|CCI80066.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440585190|emb|CCI80067.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440585192|emb|CCI80068.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440585194|emb|CCI80069.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440585196|emb|CCI80070.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440585198|emb|CCI80071.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440585200|emb|CCI80072.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440585202|emb|CCI80073.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440585204|emb|CCI80074.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440585206|emb|CCI80075.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440585208|emb|CCI80076.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440585210|emb|CCI80077.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440585212|emb|CCI80078.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440585214|emb|CCI80079.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440585216|emb|CCI80080.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440585218|emb|CCI80081.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440585220|emb|CCI80082.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440585222|emb|CCI80083.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440585226|emb|CCI80085.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440585228|emb|CCI80086.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440585230|emb|CCI80087.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440585232|emb|CCI80088.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440585234|emb|CCI80089.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440585236|emb|CCI80090.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440585238|emb|CCI80091.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440585240|emb|CCI80092.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440585242|emb|CCI80093.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440585244|emb|CCI80094.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440585246|emb|CCI80095.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440585248|emb|CCI80096.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440585250|emb|CCI80097.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440585252|emb|CCI80098.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440585254|emb|CCI80099.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440585256|emb|CCI80100.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440585258|emb|CCI80101.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440585260|emb|CCI80102.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440585262|emb|CCI80103.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440585264|emb|CCI80104.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440585266|emb|CCI80105.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440585268|emb|CCI80106.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440585270|emb|CCI80107.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440585272|emb|CCI80108.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440585274|emb|CCI80109.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440585276|emb|CCI80110.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440585278|emb|CCI80111.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440585280|emb|CCI80112.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440585282|emb|CCI80113.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440585284|emb|CCI80114.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440585286|emb|CCI80115.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440585288|emb|CCI80116.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440585290|emb|CCI80117.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440585292|emb|CCI80118.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440585294|emb|CCI80119.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440585296|emb|CCI80120.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440585298|emb|CCI80121.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440585300|emb|CCI80122.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440586198|emb|CCI80523.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440586200|emb|CCI80524.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440586202|emb|CCI80525.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440586204|emb|CCI80526.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440586206|emb|CCI80527.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440586208|emb|CCI80528.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440586210|emb|CCI80529.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440586212|emb|CCI80530.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440586214|emb|CCI80531.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440586216|emb|CCI80532.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440586218|emb|CCI80533.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440586220|emb|CCI80534.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440586222|emb|CCI80535.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440586224|emb|CCI80536.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440586226|emb|CCI80537.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440586228|emb|CCI80538.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440586230|emb|CCI80539.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440586232|emb|CCI80540.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440586234|emb|CCI80541.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440586236|emb|CCI80542.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440586238|emb|CCI80543.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440586240|emb|CCI80544.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440586242|emb|CCI80545.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440586244|emb|CCI80546.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440586246|emb|CCI80547.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440586248|emb|CCI80548.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440586250|emb|CCI80549.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440586252|emb|CCI80550.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440586254|emb|CCI80551.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440586256|emb|CCI80552.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440586258|emb|CCI80553.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440586260|emb|CCI80554.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440586262|emb|CCI80555.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440586264|emb|CCI80556.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440586266|emb|CCI80557.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440586268|emb|CCI80558.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440586270|emb|CCI80559.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440586272|emb|CCI80560.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440586274|emb|CCI80561.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440586276|emb|CCI80562.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440586278|emb|CCI80563.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440586280|emb|CCI80564.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440586282|emb|CCI80565.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440586284|emb|CCI80566.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440586286|emb|CCI80567.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440586288|emb|CCI80568.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440586290|emb|CCI80569.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440586292|emb|CCI80570.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440586294|emb|CCI80571.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440586296|emb|CCI80572.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440586298|emb|CCI80573.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440586300|emb|CCI80574.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440586302|emb|CCI80575.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440586304|emb|CCI80576.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440586306|emb|CCI80577.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440586308|emb|CCI80578.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440586310|emb|CCI80579.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440586312|emb|CCI80580.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440586314|emb|CCI80581.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440586316|emb|CCI80582.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440586318|emb|CCI80583.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440586320|emb|CCI80584.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440586322|emb|CCI80585.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440586324|emb|CCI80586.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440586326|emb|CCI80587.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440586328|emb|CCI80588.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440586330|emb|CCI80589.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440586332|emb|CCI80590.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440586334|emb|CCI80591.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440586336|emb|CCI80592.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440586338|emb|CCI80593.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440586340|emb|CCI80594.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440586342|emb|CCI80595.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440586344|emb|CCI80596.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440586346|emb|CCI80597.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440586348|emb|CCI80598.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440586350|emb|CCI80599.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440586352|emb|CCI80600.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440586354|emb|CCI80601.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440586356|emb|CCI80602.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440586358|emb|CCI80603.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440586360|emb|CCI80604.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440586362|emb|CCI80605.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440586364|emb|CCI80606.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440586366|emb|CCI80607.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440586368|emb|CCI80608.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440586370|emb|CCI80609.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440586372|emb|CCI80610.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440586374|emb|CCI80611.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440586376|emb|CCI80612.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440586378|emb|CCI80613.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440586380|emb|CCI80614.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440586382|emb|CCI80615.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440586384|emb|CCI80616.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440586386|emb|CCI80617.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440586388|emb|CCI80618.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440586390|emb|CCI80619.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440586392|emb|CCI80620.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440586394|emb|CCI80621.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440586396|emb|CCI80622.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440586398|emb|CCI80623.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440586400|emb|CCI80624.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440586402|emb|CCI80625.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440586404|emb|CCI80626.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440586406|emb|CCI80627.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440586408|emb|CCI80628.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440586410|emb|CCI80629.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440586412|emb|CCI80630.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440586414|emb|CCI80631.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440586416|emb|CCI80632.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440586418|emb|CCI80633.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440586420|emb|CCI80634.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440586422|emb|CCI80635.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440586424|emb|CCI80636.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440586426|emb|CCI80637.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440586428|emb|CCI80638.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440586430|emb|CCI80639.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440586432|emb|CCI80640.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440586434|emb|CCI80641.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
Length = 102
Score = 141 bits (355), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 68/96 (70%), Positives = 80/96 (83%), Gaps = 3/96 (3%)
Query: 103 GATSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKHRA-AE 161
GATSE +K+AARRYARCL +LGF RF NFR+VNVLGTCSMP+AI+I+ FSE+HR A
Sbjct: 1 GATSESMAKVAARRYARCLGKLGFPTRFLNFRIVNVLGTCSMPWAIKIVNFSERHRENAS 60
Query: 162 YEPELHPGVTYRIT--RPKATLKIFSTGGITVTACN 195
YEPELHPGVTY++ PKATLKIFSTG +TVTA +
Sbjct: 61 YEPELHPGVTYKMRDPDPKATLKIFSTGSVTVTAAS 96
>gi|302508189|ref|XP_003016055.1| hypothetical protein ARB_05452 [Arthroderma benhamiae CBS 112371]
gi|291179624|gb|EFE35410.1| hypothetical protein ARB_05452 [Arthroderma benhamiae CBS 112371]
Length = 295
Score = 141 bits (355), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 74/198 (37%), Positives = 112/198 (56%), Gaps = 29/198 (14%)
Query: 32 PPQPPAHDPEVDIII---NNVVCSFSVRCHLNLRQIALNGVNVEYRRENGM--------- 79
P P P V I+ N+V + ++ C L+L+ IAL+ N EY + G
Sbjct: 67 PVATPGAGPGVSGIVPTLQNIVATVNLDCRLDLKTIALHARNAEYNPKVGAGEVACLLFS 126
Query: 80 ----------------VTMKLRKPYTTASIWSSGKITCTGATSEDQSKIAARRYARCLQR 123
V M++R+P TTA I++SGK+ TGA SED SK+A+R+YAR +Q+
Sbjct: 127 FHTQVKIYILFVRFAAVIMRIREPKTTALIFASGKMVVTGAKSEDDSKLASRKYARIIQK 186
Query: 124 LGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKHR-AAEYEPELHPGVTYRITRPKATLK 182
LGF A+FT+F++ N++G+C + F IR+ + +H + YEPEL PG+ YR+ +PK L
Sbjct: 187 LGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASRHHNFSSYEPELFPGLIYRMMKPKIVLL 246
Query: 183 IFSTGGITVTACNDSNKI 200
IF +G I +T +I
Sbjct: 247 IFVSGKIVLTGAKVREEI 264
>gi|348686379|gb|EGZ26194.1| hypothetical protein PHYSODRAFT_345098 [Phytophthora sojae]
Length = 255
Score = 140 bits (354), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 71/161 (44%), Positives = 101/161 (62%), Gaps = 2/161 (1%)
Query: 42 VDIIINNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKIT 100
+ + I NVV + ++ L+L+ IAL+ N EY + V M+LR P TTA I+ SGKI
Sbjct: 50 LQVKIMNVVGTVDLKTPLDLKTIALHARNAEYNPKRFSAVIMRLRDPKTTALIFGSGKIV 109
Query: 101 CTGATSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKH-RA 159
TG TSE+ ++AAR++ R +Q+L F A+FT F+V NV+GTC + F IR+ H R
Sbjct: 110 ITGGTSEESCRLAARKFTRVIQKLNFPAKFTEFKVRNVMGTCDIRFPIRLEGLLNDHARF 169
Query: 160 AEYEPELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
+ YEPEL PG+ Y++ PK TL IF +G I + DSN +
Sbjct: 170 SSYEPELFPGLIYKLVEPKLTLLIFVSGKIVLCGARDSNHL 210
>gi|17555358|ref|NP_498635.1| Protein TBP-1 [Caenorhabditis elegans]
gi|417896|sp|P32085.1|TBP_CAEEL RecName: Full=TATA-box-binding protein; AltName: Full=TATA
sequence-binding protein; Short=TBP; AltName:
Full=TATA-binding factor; AltName: Full=TATA-box factor;
AltName: Full=Transcription initiation factor TFIID TBP
subunit
gi|12275988|gb|AAG50207.1|AF303249_1 transcription factor TFIID [Caenorhabditis elegans]
gi|156448|gb|AAA03582.1| TATA-box binding protein [Caenorhabditis elegans]
gi|351061293|emb|CCD69071.1| Protein TBP-1 [Caenorhabditis elegans]
Length = 340
Score = 140 bits (354), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 69/171 (40%), Positives = 110/171 (64%), Gaps = 3/171 (1%)
Query: 33 PQPPAHDPEVDI-IINNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTT 90
P PA ++ + + N+V + ++ L+L++IAL+ N EY + V M++R+P TT
Sbjct: 154 PATPASQLDIPMPALQNIVSTVNLGVQLDLKKIALHARNAEYNPKRFAAVIMRIREPRTT 213
Query: 91 ASIWSSGKITCTGATSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRI 150
A I+SSGK+ CTGA SE+ S++AAR+YAR +Q+LGF+A+FT F V N++G+C + F I++
Sbjct: 214 ALIFSSGKMVCTGAKSEEASRLAARKYARIVQKLGFQAKFTEFMVQNMVGSCDVRFPIQL 273
Query: 151 LQFSEKH-RAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
H + + YEPEL PG+ YR+ +P+ L IF +G + +T I
Sbjct: 274 EGLCITHSQFSTYEPELFPGLIYRMVKPRVVLLIFVSGKVVITGAKTKRDI 324
>gi|324518621|gb|ADY47156.1| TATA-box-binding protein, partial [Ascaris suum]
Length = 384
Score = 140 bits (353), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 70/167 (41%), Positives = 110/167 (65%), Gaps = 6/167 (3%)
Query: 33 PQPPAHDPEVDI---IINNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPY 88
PQ PA +D+ + N+V + ++ L+L++IAL+ N EY + V M++R+P
Sbjct: 197 PQTPASQ-LIDVPSPALQNIVSTVNLGVPLDLKKIALHARNAEYNPKRFAAVIMRIREPR 255
Query: 89 TTASIWSSGKITCTGATSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAI 148
TTA I+SSGK+ CTGA SE+ S++AAR+YAR +Q+LGF A+FT F+V N++G+C + F I
Sbjct: 256 TTALIFSSGKMVCTGAKSEEASRLAARKYARIVQKLGFNAKFTEFKVQNMVGSCDVRFPI 315
Query: 149 RILQFSEKH-RAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTAC 194
++ H + + YEPEL PG+ YR+ +P+ L IF +G + +T
Sbjct: 316 QLEGLCLTHTQFSTYEPELFPGLIYRMVKPRVVLLIFVSGKVVITGA 362
>gi|1942827|pdb|1CDW|A Chain A, Human Tbp Core Domain Complexed With Dna
Length = 179
Score = 140 bits (353), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 65/152 (42%), Positives = 102/152 (67%), Gaps = 2/152 (1%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGA 104
+ N+V + ++ C L+L+ IAL N EY + V M++R+P TTA I+SSGK+ CTGA
Sbjct: 7 LQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 66
Query: 105 TSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKHRA-AEYE 163
SE+ S++AAR+YAR +Q+LGF A+F +F++ N++G+C + F IR+ H+ + YE
Sbjct: 67 KSEENSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSYE 126
Query: 164 PELHPGVTYRITRPKATLKIFSTGGITVTACN 195
PEL PG+ YR+ +P+ L IF +G + +T
Sbjct: 127 PELFPGLIYRMIKPRIVLLIFVSGKVVLTGAK 158
>gi|351714662|gb|EHB17581.1| TATA-box-binding protein [Heterocephalus glaber]
Length = 300
Score = 140 bits (353), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 72/185 (38%), Positives = 111/185 (60%), Gaps = 5/185 (2%)
Query: 18 PPPTQTVVPIQNHAPPQPPAHDPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYR-RE 76
P P + PI P P + + + N+V + ++ C L+L+ IAL N EY +
Sbjct: 101 PSPMTPMTPI---TPATPASESSGIVPQLQNIVSTVNLGCKLDLKTIALRARNAEYNPKR 157
Query: 77 NGMVTMKLRKPYTTASIWSSGKITCTGATSEDQSKIAARRYARCLQRLGFKARFTNFRVV 136
V M++R+P TTA I+SSGK+ CTGA SE+QS AR+YAR +Q+LGF A+F +F++
Sbjct: 158 FAAVIMRIREPRTTALIFSSGKMVCTGAKSEEQSSRLARKYARVVQKLGFPAKFLDFKIQ 217
Query: 137 NVLGTCSMPFAIRILQFSEKHRA-AEYEPELHPGVTYRITRPKATLKIFSTGGITVTACN 195
N++G+C + F IR+ H+ + YEPEL PG+ YR+ +P+ L IF +G + +T
Sbjct: 218 NMVGSCDVKFPIRLEGLVLTHQQFSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLTGAK 277
Query: 196 DSNKI 200
+I
Sbjct: 278 VRAEI 282
>gi|402588148|gb|EJW82082.1| TATA box binding protein [Wuchereria bancrofti]
Length = 198
Score = 140 bits (352), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 71/177 (40%), Positives = 107/177 (60%), Gaps = 8/177 (4%)
Query: 32 PPQPPAHD------PEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKL 84
PPQ P P + I++ V S++C +IAL+ N EY + V M++
Sbjct: 6 PPQTPGSQLIDIPSPALQNIVSTVNLGESLKCAAGFEKIALHARNAEYNPKRFAAVIMRI 65
Query: 85 RKPYTTASIWSSGKITCTGATSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSM 144
R+P TTA I+SSGK+ CTGA SE+ S++AAR+YAR +Q+LGF A+FT F+V N++G+C +
Sbjct: 66 REPRTTALIFSSGKMVCTGAKSEESSRLAARKYARIVQKLGFNAKFTEFKVQNMVGSCDV 125
Query: 145 PFAIRILQFSEKH-RAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
F I++ H + + YEPEL PG+ YR+ +P+ L IF +G + +T I
Sbjct: 126 RFPIQLEGLCLTHTQFSTYEPELFPGLIYRMVKPRVVLLIFVSGKVVITGAKYKKDI 182
>gi|170590133|ref|XP_001899827.1| TBP-like factor [Brugia malayi]
gi|158592746|gb|EDP31343.1| TBP-like factor, putative [Brugia malayi]
Length = 403
Score = 140 bits (352), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 77/198 (38%), Positives = 114/198 (57%), Gaps = 10/198 (5%)
Query: 1 MTTAGMTTTHSSHSEQEPPPTQTVVPIQNHAPPQPPAHDPEVDIIINNVVCSFSVRCHLN 60
M + T + +E+ PP T + + A D E+DI I NVVC++++ H++
Sbjct: 119 MDASSGKTGYEEQTEEAPPSTSSEL-----ADRDDSDEDGEIDIQIRNVVCNYTLPLHID 173
Query: 61 LRQIALNGVNVEYRRENGMVTMKLRKPYTTASIWSSGKITCTGATSEDQSKIAARRYARC 120
L ++ALN NV + R G++ + R P I+SSGKI G SE + K AAR AR
Sbjct: 174 LHRVALNSGNVAFDRGRGVLLKQKRNPSCYVKIYSSGKIYIVGCRSESECKRAARGVARM 233
Query: 121 LQRLGFK----ARFTNFRVVNVLGTCSMPFAIRILQFSEKH-RAAEYEPELHPGVTYRIT 175
+Q+ K R N+RV NVL TC MPF ++I + ++K+ ++YEPEL G+ +R T
Sbjct: 234 VQKTMGKMMDVVRIRNYRVCNVLATCKMPFGVKIEELAQKYPDCSQYEPELSVGLIWRST 293
Query: 176 RPKATLKIFSTGGITVTA 193
P+ATL+I +TG ITVT
Sbjct: 294 NPRATLRIHTTGSITVTG 311
>gi|268575218|ref|XP_002642588.1| C. briggsae CBR-TBP-1 protein [Caenorhabditis briggsae]
Length = 337
Score = 139 bits (351), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 66/157 (42%), Positives = 104/157 (66%), Gaps = 2/157 (1%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGA 104
+ N+V + ++ L+L++IAL+ N EY + V M++R+P TTA I+SSGK+ CTGA
Sbjct: 165 LQNIVSTVNLGVPLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 224
Query: 105 TSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKH-RAAEYE 163
SE+ S++AAR+YAR +Q+LGF+A+FT F V N++G+C + F I++ H + + YE
Sbjct: 225 KSEEASRLAARKYARIVQKLGFQAKFTEFMVQNMVGSCDVRFPIQLEGLCITHAQFSTYE 284
Query: 164 PELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
PEL PG+ YR+ +P+ L IF +G + +T I
Sbjct: 285 PELFPGLIYRMVKPRVVLLIFVSGKVVITGAKTKKDI 321
>gi|308467285|ref|XP_003095891.1| CRE-TBP-1 protein [Caenorhabditis remanei]
gi|308244262|gb|EFO88214.1| CRE-TBP-1 protein [Caenorhabditis remanei]
Length = 338
Score = 139 bits (351), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 66/157 (42%), Positives = 104/157 (66%), Gaps = 2/157 (1%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGA 104
+ N+V + ++ L+L++IAL+ N EY + V M++R+P TTA I+SSGK+ CTGA
Sbjct: 166 LQNIVSTVNLGVPLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 225
Query: 105 TSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKH-RAAEYE 163
SE+ S++AAR+YAR +Q+LGF+A+FT F V N++G+C + F I++ H + + YE
Sbjct: 226 KSEEASRLAARKYARIVQKLGFQAKFTEFMVQNMVGSCDVRFPIQLEGLCITHAQFSTYE 285
Query: 164 PELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
PEL PG+ YR+ +P+ L IF +G + +T I
Sbjct: 286 PELFPGLIYRMVKPRVVLLIFVSGKVVITGAKTKKDI 322
>gi|330846314|ref|XP_003294984.1| TATA-binding protein [Dictyostelium purpureum]
gi|325074431|gb|EGC28489.1| TATA-binding protein [Dictyostelium purpureum]
Length = 224
Score = 139 bits (351), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 66/157 (42%), Positives = 100/157 (63%), Gaps = 2/157 (1%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGA 104
+ N+V + ++ L+L+ IAL N EY + V M++R+P TTA I+ SGK+ CTGA
Sbjct: 45 LQNIVSTVNMATELDLKAIALGARNAEYNPKRFAAVIMRIREPKTTALIFKSGKMVCTGA 104
Query: 105 TSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKHRA-AEYE 163
SED SK AAR+YAR +Q+L F ARFT+F++ N++G+C + F I++ H + YE
Sbjct: 105 KSEDASKYAARKYARIIQKLDFPARFTDFKIQNIVGSCDVKFPIKLELLHNAHTSFTNYE 164
Query: 164 PELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
PE+ PG+ Y++ +PK L IF +G I +T +I
Sbjct: 165 PEIFPGLIYKMIQPKVVLLIFVSGKIVLTGAKVREEI 201
>gi|302833409|ref|XP_002948268.1| TATA-box binding protein [Volvox carteri f. nagariensis]
gi|300266488|gb|EFJ50675.1| TATA-box binding protein [Volvox carteri f. nagariensis]
Length = 338
Score = 139 bits (350), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 69/166 (41%), Positives = 105/166 (63%), Gaps = 2/166 (1%)
Query: 37 AHDPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWS 95
AH + + NVV + ++ L+L++IA++ N EY + V M++R+P TTA I++
Sbjct: 3 AHVSGITPQLQNVVATVNLGTKLDLKEIAMHARNAEYNPKRFAAVIMRIREPKTTALIFA 62
Query: 96 SGKITCTGATSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSE 155
SGK+ CTGA SED S+ AARRYA+ +Q+LGF A F F++ N++G+C + F IR+ +
Sbjct: 63 SGKMVCTGAKSEDDSRTAARRYAKIVQKLGFPATFKEFKIQNIVGSCDVKFPIRLEGLAY 122
Query: 156 KHRA-AEYEPELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
H A YEPEL PG+ YR+ +PK L IF +G + +T +I
Sbjct: 123 AHSLFASYEPELFPGLIYRMKQPKIVLLIFVSGKVVLTGAKTRYEI 168
>gi|302773061|ref|XP_002969948.1| hypothetical protein SELMODRAFT_16705 [Selaginella moellendorffii]
gi|302799318|ref|XP_002981418.1| hypothetical protein SELMODRAFT_37142 [Selaginella moellendorffii]
gi|300150958|gb|EFJ17606.1| hypothetical protein SELMODRAFT_37142 [Selaginella moellendorffii]
gi|300162459|gb|EFJ29072.1| hypothetical protein SELMODRAFT_16705 [Selaginella moellendorffii]
Length = 196
Score = 139 bits (350), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 67/158 (42%), Positives = 105/158 (66%), Gaps = 4/158 (2%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGA 104
+ N+V + ++ C L L+ IAL+ N EY + V M++R+P TTA I++SGK+ CTGA
Sbjct: 21 LQNIVATVNMDCKLELKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVCTGA 80
Query: 105 TSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRI--LQFSEKHRAAEY 162
SE ++AAR+YAR +Q+LGF ++F +F++ N++G+C + F IR+ L FS H + Y
Sbjct: 81 KSEQNCRLAARKYARIIQKLGFPSQFKDFKIQNIVGSCDVRFPIRLEGLAFSHGHFST-Y 139
Query: 163 EPELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
EPE+ PG+ YR+ +PK L IF +G I +T ++I
Sbjct: 140 EPEIFPGLIYRMKQPKIVLLIFVSGKIVLTGAKVRDEI 177
>gi|449543430|gb|EMD34406.1| hypothetical protein CERSUDRAFT_97665 [Ceriporiopsis subvermispora
B]
Length = 338
Score = 139 bits (349), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 65/162 (40%), Positives = 102/162 (62%), Gaps = 12/162 (7%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYR-----------RENGMVTMKLRKPYTTASIW 94
+ N+V + ++ C L+L+ IAL+ N EY + V M++R P TTA I+
Sbjct: 142 LQNIVATVNLDCRLDLKTIALHARNAEYNPKWPDFRVCALQRFAAVIMRIRDPKTTALIF 201
Query: 95 SSGKITCTGATSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFS 154
+SGK+ TGA SED S++A+R+YAR +Q+LGF A+F+ F++ N++G+C + F IR+ +
Sbjct: 202 ASGKMVVTGAKSEDDSRLASRKYARIVQKLGFDAKFSEFKIQNIVGSCDVKFPIRLEGLA 261
Query: 155 EKH-RAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTACN 195
H + + YEPEL PG+ YR+ +PK L IF +G I +T
Sbjct: 262 YSHGQFSSYEPELFPGLIYRMIKPKVVLLIFVSGKIVLTGAK 303
>gi|440585224|emb|CCI80084.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
Length = 102
Score = 138 bits (348), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 67/96 (69%), Positives = 79/96 (82%), Gaps = 3/96 (3%)
Query: 103 GATSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKHRA-AE 161
GATSE +K+AARRYARCL +LGF RF NFR+VNVLGTCSMP+AI+I+ FSE+HR A
Sbjct: 1 GATSESMAKVAARRYARCLGKLGFPTRFLNFRIVNVLGTCSMPWAIKIVNFSERHRENAS 60
Query: 162 YEPELHPGVTYRIT--RPKATLKIFSTGGITVTACN 195
YEPELHPGVTY++ PKATLKIFS G +TVTA +
Sbjct: 61 YEPELHPGVTYKMRDPDPKATLKIFSPGSVTVTAAS 96
>gi|66819952|ref|XP_643633.1| TATA-binding protein [Dictyostelium discoideum AX4]
gi|166210407|sp|P26355.2|TBP_DICDI RecName: Full=TATA-box-binding protein; AltName: Full=TATA
sequence-binding protein; Short=TBP; AltName:
Full=TATA-binding factor; AltName: Full=TATA-box factor;
AltName: Full=Transcription initiation factor TFIID TBP
subunit
gi|60471603|gb|EAL69559.1| TATA-binding protein [Dictyostelium discoideum AX4]
Length = 205
Score = 138 bits (348), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 65/157 (41%), Positives = 100/157 (63%), Gaps = 2/157 (1%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGA 104
+ N+V + ++ L+L+ IAL N EY + V M++R+P TTA I+ SGK+ CTGA
Sbjct: 27 LQNIVSTVNMATELDLKAIALGARNAEYNPKRFAAVIMRIREPKTTALIFKSGKMVCTGA 86
Query: 105 TSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKHRA-AEYE 163
SED S+ AAR+YAR +Q+L F ARFT+F++ N++G+C + F I++ H + YE
Sbjct: 87 KSEDASRFAARKYARIIQKLDFPARFTDFKIQNIVGSCDVKFPIKLELLHNAHTSFTNYE 146
Query: 164 PELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
PE+ PG+ Y++ +PK L IF +G I +T +I
Sbjct: 147 PEIFPGLIYKMIQPKVVLLIFVSGKIVLTGAKVREEI 183
>gi|300701392|ref|XP_002994966.1| hypothetical protein NCER_102344 [Nosema ceranae BRL01]
gi|239603310|gb|EEQ81295.1| hypothetical protein NCER_102344 [Nosema ceranae BRL01]
Length = 199
Score = 138 bits (348), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 65/152 (42%), Positives = 98/152 (64%), Gaps = 2/152 (1%)
Query: 45 IINNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTG 103
I+ NVV + ++ C L+L+ IAL N EY + V M++R+P TTA I++SGK+ TG
Sbjct: 25 ILQNVVATVNLNCKLDLKNIALRARNAEYNPKRFAAVIMRIREPKTTALIFASGKVVITG 84
Query: 104 ATSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKH-RAAEY 162
A SE QSK+AA+RY++ + +LGF A F +F++ N++ +C F+IR+ + H Y
Sbjct: 85 AKSEKQSKLAAQRYSKIINKLGFNADFNDFKIQNIVSSCDTKFSIRLEGLAYSHSNYCSY 144
Query: 163 EPELHPGVTYRITRPKATLKIFSTGGITVTAC 194
EPEL PG+ YR+ +PK L IF +G I +T
Sbjct: 145 EPELFPGLIYRMVKPKIVLLIFVSGKIVLTGA 176
>gi|294034|gb|AAA16924.1| TATA box-binding protein, partial [Onchocerca volvulus]
Length = 179
Score = 138 bits (348), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 66/157 (42%), Positives = 104/157 (66%), Gaps = 2/157 (1%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGA 104
+ N+V + ++ L+L++IAL+ N EY + V M++R+P TTA I+SSGK+ CTGA
Sbjct: 7 LQNIVSTVNLGVPLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 66
Query: 105 TSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKH-RAAEYE 163
SE+ S++AAR+YAR +Q+LGF A+FT F+V N++G+C + F I++ H + + YE
Sbjct: 67 KSEESSRLAARKYARIVQKLGFNAKFTEFKVQNMVGSCDVRFPIQLEGLCLTHTQFSTYE 126
Query: 164 PELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
PEL PG+ YR+ +P+ L IF +G + +T I
Sbjct: 127 PELFPGLIYRMVKPRVVLLIFVSGKVVITGAKYKKDI 163
>gi|198427023|ref|XP_002127120.1| PREDICTED: similar to TATA-box binding protein [Ciona intestinalis]
Length = 356
Score = 138 bits (347), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 65/157 (41%), Positives = 105/157 (66%), Gaps = 2/157 (1%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGA 104
+ N+V + ++ L+L++IAL+ N EY + V M++R+P TTA I+SSGK+ CTGA
Sbjct: 182 LQNIVSTVNLDTKLDLKRIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 241
Query: 105 TSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKH-RAAEYE 163
SE+ S++AAR+YAR +Q+LGF A+F +F++ N++G+ + F IR+ H + + YE
Sbjct: 242 KSENASRLAARKYARVVQKLGFPAKFIDFKIQNMVGSVDVKFPIRLEGLVLAHSQFSSYE 301
Query: 164 PELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
PEL PG+ YR+ +P+ L IF +G + +T N+I
Sbjct: 302 PELFPGLIYRMVKPRIVLLIFVSGKVVLTGAKVYNEI 338
>gi|268566091|ref|XP_002639632.1| C. briggsae CBR-TLF-1 protein [Caenorhabditis briggsae]
Length = 512
Score = 137 bits (346), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 72/171 (42%), Positives = 106/171 (61%), Gaps = 5/171 (2%)
Query: 35 PPAHDPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYRRENGMVTMKLRKPYTTASIW 94
P D ++DI I NVVC++++ H++LR++A+N NV Y RE G++ + R P ++
Sbjct: 263 PMPDDSDIDIQIRNVVCNYTLPLHIDLRKLAMNTHNVTYEREKGVMMKQKRNPGCYIKVY 322
Query: 95 SSGKITCTGATSEDQSKIAARRYARCLQRLGFKAR----FTNFRVVNVLGTCSMPFAIRI 150
SSGK+ G SED + AAR AR +QR+ K + N+RV NVL TC +PF I+I
Sbjct: 323 SSGKVYIVGCRSEDDCRRAARSIARHVQRVMGKTKEKVSIRNYRVNNVLATCRLPFGIKI 382
Query: 151 LQFSEKHRA-AEYEPELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
+ + K+ A + YEPEL G+ +R T PKATL+I +TG ITVT + +
Sbjct: 383 EEVAAKYPAESTYEPELSVGLVWRSTTPKATLRIHTTGSITVTGASSEADV 433
>gi|349602909|gb|AEP98902.1| TATA-box-binding protein-like protein, partial [Equus caballus]
Length = 169
Score = 137 bits (345), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 65/146 (44%), Positives = 98/146 (67%), Gaps = 2/146 (1%)
Query: 57 CHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGATSEDQSKIAAR 115
C L+L+ IAL N EY + V M++R+P TTA I+SSGK+ CTGA SE+QS++AAR
Sbjct: 6 CKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKSEEQSRLAAR 65
Query: 116 RYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKHRA-AEYEPELHPGVTYRI 174
+YAR +Q+LGF A+F +F++ N++G+C + F IR+ H+ + YEPEL PG+ YR+
Sbjct: 66 KYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSYEPELFPGLIYRM 125
Query: 175 TRPKATLKIFSTGGITVTACNDSNKI 200
+P+ L IF +G + +T +I
Sbjct: 126 IKPRIVLLIFVSGKVVLTGAKVRAEI 151
>gi|429962646|gb|ELA42190.1| TATA-box-binding protein [Vittaforma corneae ATCC 50505]
Length = 197
Score = 136 bits (343), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 64/151 (42%), Positives = 98/151 (64%), Gaps = 2/151 (1%)
Query: 45 IINNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTG 103
++ NVV + ++ C L+LR IAL N EY + V M++R P TTA I++SGK+ TG
Sbjct: 23 VLQNVVATVNLNCKLDLRSIALRARNAEYNPKRFAAVIMRIRDPKTTALIFASGKMVVTG 82
Query: 104 ATSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKH-RAAEY 162
A SE SK+A++RYA+ + +LGF A+FT+F++ N++ +C + F I++ + H Y
Sbjct: 83 AKSEKASKMASQRYAKIISKLGFNAQFTDFKIQNIVSSCDLKFCIKLEGLAYAHSNFCSY 142
Query: 163 EPELHPGVTYRITRPKATLKIFSTGGITVTA 193
EPEL PG+ YR+ +PK L IF +G I +T
Sbjct: 143 EPELFPGLIYRMVKPKIVLLIFVSGKIVLTG 173
>gi|196001097|ref|XP_002110416.1| hypothetical protein TRIADDRAFT_22173 [Trichoplax adhaerens]
gi|190586367|gb|EDV26420.1| hypothetical protein TRIADDRAFT_22173 [Trichoplax adhaerens]
Length = 220
Score = 136 bits (342), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 68/162 (41%), Positives = 100/162 (61%), Gaps = 4/162 (2%)
Query: 43 DII--INNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKI 99
DI+ I NVV +F+++C L LR IA N EY + + M++R P TTA I+SSGKI
Sbjct: 30 DIVPQIQNVVSTFNLKCSLKLRDIASKARNAEYNPKRFAALIMRIRDPKTTALIFSSGKI 89
Query: 100 TCTGATSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKH-R 158
C GA S + S++AAR++AR +Q+LG+ A+FT F++ N++G+C + F I + H
Sbjct: 90 VCAGAKSPELSRLAARKHARIIQKLGYPAKFTQFQIQNIVGSCDVKFHISLEGLVVTHSH 149
Query: 159 AAEYEPELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
YEPEL PG+ YR+ +PK L +F +G I +T I
Sbjct: 150 FCSYEPELFPGLIYRMVQPKVVLLVFVSGKIVLTGAKVEEDI 191
>gi|167899|gb|AAA33256.1| TFIID [Dictyostelium discoideum]
Length = 205
Score = 136 bits (342), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 64/151 (42%), Positives = 97/151 (64%), Gaps = 2/151 (1%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGA 104
+ N+V + ++ L L+ IAL N EY + V M++R+P TTA I+ SGK+ CTGA
Sbjct: 27 LQNIVSTVNMATELYLKAIALGARNAEYNPKRFAAVIMRIREPKTTALIFKSGKMVCTGA 86
Query: 105 TSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKHRA-AEYE 163
SED S+ AAR+YAR +Q+L F ARFT+F++ N++G+C + F I++ H + YE
Sbjct: 87 KSEDASRFAARKYARIIQKLDFPARFTDFKIQNIVGSCDVKFPIKLELLHNAHTSFTNYE 146
Query: 164 PELHPGVTYRITRPKATLKIFSTGGITVTAC 194
PE+ PG+ Y++ +PK L IF +G I +T
Sbjct: 147 PEIFPGLIYKMIQPKVLLLIFVSGKIVLTGA 177
>gi|396081293|gb|AFN82911.1| eukaryotic TATA box binding transcription initiation factor TFIID-1
[Encephalitozoon romaleae SJ-2008]
Length = 198
Score = 136 bits (342), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 65/157 (41%), Positives = 99/157 (63%), Gaps = 2/157 (1%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGA 104
+ NVV + ++ C L+L+ IAL N EY + V M++R+P TTA I++SGK+ TGA
Sbjct: 25 LQNVVATVNLNCKLDLKNIALRARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVITGA 84
Query: 105 TSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKH-RAAEYE 163
SE SK+AA+RYA+ + +LGF A F +F++ N++ +C + F+IR+ + H YE
Sbjct: 85 KSEKSSKMAAQRYAKIIHKLGFNATFDDFKIQNIVSSCDIKFSIRLEGLAYAHSNYCSYE 144
Query: 164 PELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
PEL PG+ YR+ +PK L IF +G I +T + I
Sbjct: 145 PELFPGLIYRMVKPKIVLLIFVSGKIVLTGAKVRDDI 181
>gi|401826152|ref|XP_003887170.1| TATA-box binding protein [Encephalitozoon hellem ATCC 50504]
gi|392998328|gb|AFM98189.1| TATA-box binding protein [Encephalitozoon hellem ATCC 50504]
Length = 198
Score = 136 bits (342), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 65/157 (41%), Positives = 99/157 (63%), Gaps = 2/157 (1%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGA 104
+ NVV + ++ C L+L+ IAL N EY + V M++R+P TTA I++SGK+ TGA
Sbjct: 25 LQNVVATVNLNCKLDLKNIALRARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVITGA 84
Query: 105 TSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKH-RAAEYE 163
SE SK+AA+RYA+ + +LGF A F +F++ N++ +C + F+IR+ + H YE
Sbjct: 85 KSEKSSKMAAQRYAKIIHKLGFNATFDDFKIQNIVSSCDIKFSIRLEGLAYAHSNYCSYE 144
Query: 164 PELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
PEL PG+ YR+ +PK L IF +G I +T + I
Sbjct: 145 PELFPGLIYRMVKPKIVLLIFVSGKIVLTGAKVRDDI 181
>gi|255078440|ref|XP_002502800.1| transcription elongation-nucleosome displacement protein
[Micromonas sp. RCC299]
gi|226518066|gb|ACO64058.1| transcription elongation-nucleosome displacement protein
[Micromonas sp. RCC299]
Length = 240
Score = 136 bits (342), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 66/158 (41%), Positives = 103/158 (65%), Gaps = 4/158 (2%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGA 104
+ N+V + ++ C L+L+ IA + NVEY + M++R P TTA I+SSGK+ CTGA
Sbjct: 41 LQNIVATVNLDCKLDLKTIAFHARNVEYNPKRFAAAIMRIRAPKTTALIFSSGKMVCTGA 100
Query: 105 TSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRI--LQFSEKHRAAEY 162
+E ++ AAR+YA+ + +LGF A+F +F++ N++G+C + F IR+ L +S H A+Y
Sbjct: 101 KTEALAREAARKYAKVISKLGFPAQFKDFKIQNMVGSCDVKFPIRLEGLAWSHGH-FAQY 159
Query: 163 EPELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
EPEL PG+ YR+ PK L IF +G I +T + + I
Sbjct: 160 EPELFPGLIYRMQMPKIVLLIFVSGKIVLTGGKNRDDI 197
>gi|331686248|gb|AED87004.1| tata box binding protein [Sterkiella histriomuscorum]
Length = 302
Score = 135 bits (341), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 73/191 (38%), Positives = 118/191 (61%), Gaps = 8/191 (4%)
Query: 14 SEQEPPPTQTVVPIQNHAPPQPPAHDPEV-DIIINNVVCSFSVRCHLNLRQIALNGVNVE 72
S+Q PP T VP A PQP ++ I+ N+V + ++ L+LR+IA+N N E
Sbjct: 85 SQQIPPRTGNFVP----ALPQPSVSAEKIPQPILQNIVSTANLGMKLDLRKIAMNCRNAE 140
Query: 73 YR-RENGMVTMKLRKPYTTASIWSSGKITCTGATSEDQSKIAARRYARCLQRLGFK-ARF 130
Y + V M++R P TTA I+SSGK+ CTGA SE+ S+ AA++Y++ ++++GF+
Sbjct: 141 YNPKRFAAVIMRIRDPKTTALIFSSGKMVCTGAKSEEFSRDAAKKYSKAIKKVGFEDVNM 200
Query: 131 TNFRVVNVLGTCSMPFAIRILQFSEKH-RAAEYEPELHPGVTYRITRPKATLKIFSTGGI 189
+F++ N++G+C + F I + S H + ++YEPE+ PG+ YR+ PK L IF++G I
Sbjct: 201 QDFKIQNIVGSCDVGFPISLESLSSTHEKFSQYEPEIFPGLIYRMATPKIVLLIFASGKI 260
Query: 190 TVTACNDSNKI 200
+T + N I
Sbjct: 261 VLTGAKNKNDI 271
>gi|324509203|gb|ADY43873.1| TATA box-binding protein-like protein 2 [Ascaris suum]
Length = 438
Score = 135 bits (341), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 75/181 (41%), Positives = 110/181 (60%), Gaps = 8/181 (4%)
Query: 18 PPPTQTVVPIQNHAPPQPPAHDPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYRREN 77
PP T T +H + D E+DI I NVVC++++ H++L ++ALN NV + R
Sbjct: 169 PPSTSTA---NSHEQDEESEPDGEIDIQIRNVVCTYTLPLHIDLHRVALNCGNVTFDRGR 225
Query: 78 GMVTMKLRKPYTTASIWSSGKITCTGATSEDQSKIAARRYARCLQR-LGFKA---RFTNF 133
G++ + R P ++SSGKI G SE + K AAR AR +Q+ +G +A R N+
Sbjct: 226 GVLLKQKRNPLCYVKVYSSGKIYIVGCRSEAECKRAARGVARMVQKSMGKQADVVRIRNY 285
Query: 134 RVVNVLGTCSMPFAIRILQFSEKH-RAAEYEPELHPGVTYRITRPKATLKIFSTGGITVT 192
R+ NVL TC MPF I+I + ++K+ ++YEPEL G+ +R PKATL+I +TG ITVT
Sbjct: 286 RICNVLATCKMPFGIKIEEMAQKYPENSDYEPELSVGLVWRSVDPKATLRIHTTGSITVT 345
Query: 193 A 193
Sbjct: 346 G 346
>gi|324505039|gb|ADY42170.1| TATA box-binding protein-like protein 2 [Ascaris suum]
Length = 512
Score = 135 bits (340), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 75/181 (41%), Positives = 110/181 (60%), Gaps = 8/181 (4%)
Query: 18 PPPTQTVVPIQNHAPPQPPAHDPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYRREN 77
PP T T +H + D E+DI I NVVC++++ H++L ++ALN NV + R
Sbjct: 243 PPSTSTA---NSHEQDEESEPDGEIDIQIRNVVCTYTLPLHIDLHRVALNCGNVTFDRGR 299
Query: 78 GMVTMKLRKPYTTASIWSSGKITCTGATSEDQSKIAARRYARCLQR-LGFKA---RFTNF 133
G++ + R P ++SSGKI G SE + K AAR AR +Q+ +G +A R N+
Sbjct: 300 GVLLKQKRNPLCYVKVYSSGKIYIVGCRSEAECKRAARGVARMVQKSMGKQADVVRIRNY 359
Query: 134 RVVNVLGTCSMPFAIRILQFSEKH-RAAEYEPELHPGVTYRITRPKATLKIFSTGGITVT 192
R+ NVL TC MPF I+I + ++K+ ++YEPEL G+ +R PKATL+I +TG ITVT
Sbjct: 360 RICNVLATCKMPFGIKIEEMAQKYPENSDYEPELSVGLVWRSVDPKATLRIHTTGSITVT 419
Query: 193 A 193
Sbjct: 420 G 420
>gi|162605642|ref|XP_001713336.1| TATA binding protein of transcription factor IID [Guillardia theta]
gi|162605926|ref|XP_001713478.1| TATA binding protein of transcription factor IID [Guillardia theta]
gi|162606298|ref|XP_001713179.1| TATA binding protein of transcription factor IID [Guillardia theta]
gi|6690140|gb|AAF24005.1|AF083031_2 TATA binding protein of transcription factor IID [Guillardia theta]
gi|13794403|gb|AAK39780.1|AF083031_144 TATA binding protein of transcription factor IID [Guillardia theta]
gi|4583657|emb|CAB40395.1| TATA binding protein of transcription factor IID [Guillardia theta]
Length = 249
Score = 135 bits (340), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 68/158 (43%), Positives = 99/158 (62%), Gaps = 3/158 (1%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGA 104
I NVV + S+ L+L++IAL N EY R V M++R P TTA I+SSGK+ TGA
Sbjct: 75 IQNVVSTVSLGIQLDLKRIALKARNAEYNPRRFAAVIMRIRDPKTTALIFSSGKMVVTGA 134
Query: 105 TSEDQSKIAARRYARCLQRLGF-KARFTNFRVVNVLGTCSMPFAIRILQFSEKH-RAAEY 162
SED +++A ++YAR +QRLG+ A+F +FR+ N++ +C + F IR+ + H + Y
Sbjct: 135 KSEDSARVACKKYARIIQRLGYGHAKFIDFRIQNIVASCDVRFPIRLESLAHAHNQFCSY 194
Query: 163 EPELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
EPEL PG+ YR+ PK L IF +G + +T N I
Sbjct: 195 EPELFPGLIYRMITPKVVLLIFVSGKLVLTGAKQRNDI 232
>gi|255579166|ref|XP_002530430.1| TATA-box binding protein, putative [Ricinus communis]
gi|223530038|gb|EEF31961.1| TATA-box binding protein, putative [Ricinus communis]
Length = 193
Score = 135 bits (339), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 59/158 (37%), Positives = 107/158 (67%), Gaps = 3/158 (1%)
Query: 45 IINNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTG 103
++ N+ + ++ C L+L++IAL+ +N EY + VTM++R P TTA I++SG++ CTG
Sbjct: 19 VLQNIASTVNLDCKLDLKRIALHSLNSEYDPKRFSAVTMRIRHPQTTALIFASGRVVCTG 78
Query: 104 ATSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQF-SEKHRA-AE 161
A +E+ SK+A R++AR +Q+LGF A+F +F++ N++ +C M F +R+ +F KH A +
Sbjct: 79 AKTEEDSKLAMRKFARIVQKLGFPAKFKDFKIQNIVASCDMKFPLRLEKFIYTKHAAFSR 138
Query: 162 YEPELHPGVTYRITRPKATLKIFSTGGITVTACNDSNK 199
YEP++ PG+ YR+ + + IF +G + +T +++
Sbjct: 139 YEPDVFPGLIYRMKESRIIMLIFVSGKVVITGAKKTDE 176
>gi|63145982|gb|AAY33926.1| TATA box binding protein [Ovis aries]
Length = 141
Score = 135 bits (339), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 63/135 (46%), Positives = 94/135 (69%), Gaps = 2/135 (1%)
Query: 57 CHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGATSEDQSKIAAR 115
C L+L+ IAL N EY + V M++R+P TTA I+SSGK+ CTGA SE+QS++AAR
Sbjct: 7 CKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKSEEQSRLAAR 66
Query: 116 RYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKHRA-AEYEPELHPGVTYRI 174
+YAR +Q+LGF A+F +F++ N++G+C + F IR+ H+ + YEPEL PG+ YR+
Sbjct: 67 KYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSYEPELFPGLIYRM 126
Query: 175 TRPKATLKIFSTGGI 189
+P+ L IF +G +
Sbjct: 127 IKPRIVLLIFVSGKV 141
>gi|413933837|gb|AFW68388.1| hypothetical protein ZEAMMB73_647229, partial [Zea mays]
Length = 189
Score = 134 bits (338), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 62/157 (39%), Positives = 102/157 (64%), Gaps = 2/157 (1%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGA 104
+ N+V + ++ C ++L+ +A + N EY R G M++R+P TTA I+++GK+ CTGA
Sbjct: 17 LQNIVSTVNLDCKVDLQHVANSARNAEYNPRRFGAAIMRIREPKTTALIFATGKMVCTGA 76
Query: 105 TSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFS-EKHRAAEYE 163
SE S++AAR++AR +Q+LGF ARF +F+V N++G+C + F IR+ + +A YE
Sbjct: 77 KSEADSRLAARKFARIVQKLGFPARFKDFKVQNIVGSCDLKFPIRLEGLALASGLSATYE 136
Query: 164 PELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
PE+ PG+ YR+ PK + +F +G I +T +I
Sbjct: 137 PEIFPGLVYRMVDPKVVILVFVSGKIVLTGAKVQEEI 173
>gi|403333508|gb|EJY65856.1| Tata box binding protein [Oxytricha trifallax]
Length = 500
Score = 134 bits (338), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 72/190 (37%), Positives = 117/190 (61%), Gaps = 8/190 (4%)
Query: 15 EQEPPPTQTVVPIQNHAPPQPPAHDPEV-DIIINNVVCSFSVRCHLNLRQIALNGVNVEY 73
+Q PP T VP A PQP ++ I+ N+V + ++ L+LR+IA+N N EY
Sbjct: 284 QQIPPRTGNFVP----ALPQPSVSAEKIPQPILQNIVSTANLGMKLDLRKIAMNCRNAEY 339
Query: 74 R-RENGMVTMKLRKPYTTASIWSSGKITCTGATSEDQSKIAARRYARCLQRLGFK-ARFT 131
+ V M++R P TTA I+SSGK+ CTGA SE+ S+ AA++Y++ ++++GF+
Sbjct: 340 NPKRFAAVIMRIRDPKTTALIFSSGKMVCTGAKSEEFSRDAAKKYSKAIKKVGFEDVNMQ 399
Query: 132 NFRVVNVLGTCSMPFAIRILQFSEKH-RAAEYEPELHPGVTYRITRPKATLKIFSTGGIT 190
+F++ N++G+C + F I + S H + ++YEPE+ PG+ YR+ PK L IF++G I
Sbjct: 400 DFKIQNIVGSCDVGFPISLESLSSTHEKFSQYEPEIFPGLIYRMATPKIVLLIFASGKIV 459
Query: 191 VTACNDSNKI 200
+T + N I
Sbjct: 460 LTGAKNKNDI 469
>gi|19074223|ref|NP_584829.1| TRANSCRIPTION INITIATION FACTOR TFIID (TFIID-1 [Encephalitozoon
cuniculi GB-M1]
gi|19068865|emb|CAD25333.1| TRANSCRIPTION INITIATION FACTOR TFIID (TFIID-1 [Encephalitozoon
cuniculi GB-M1]
gi|449329027|gb|AGE95302.1| transcription initiation factor tfIId [Encephalitozoon cuniculi]
Length = 198
Score = 134 bits (338), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 64/157 (40%), Positives = 99/157 (63%), Gaps = 2/157 (1%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGA 104
+ NVV + ++ C L+L+ IAL N EY + V M++R+P TTA I++SGK+ TGA
Sbjct: 25 LQNVVATVNLSCKLDLKNIALRARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVITGA 84
Query: 105 TSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKH-RAAEYE 163
SE S++AA+RYA+ + +LGF A F +F++ N++ +C + F+IR+ + H YE
Sbjct: 85 KSEKSSRMAAQRYAKIIHKLGFNATFDDFKIQNIVSSCDIKFSIRLEGLAYAHSNYCSYE 144
Query: 164 PELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
PEL PG+ YR+ +PK L IF +G I +T + I
Sbjct: 145 PELFPGLIYRMVKPKIVLLIFVSGKIVLTGAKVRDDI 181
>gi|307109595|gb|EFN57833.1| hypothetical protein CHLNCDRAFT_20778 [Chlorella variabilis]
Length = 209
Score = 134 bits (338), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 67/175 (38%), Positives = 104/175 (59%), Gaps = 11/175 (6%)
Query: 37 AHDPEVDIIIN---------NVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRK 86
A +PEVD+ I+ NVV + ++ C L+L+ IAL+ N EY + V M++R+
Sbjct: 13 AAEPEVDLSIHPSGIVPQLQNVVATVNLECKLDLKNIALHARNAEYNPKRFAAVIMRIRE 72
Query: 87 PYTTASIWSSGKITCTGATSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPF 146
P +TA I+ SGK+ CTG SE +++IA+R+YA+ LQ+L + F F++ N++G+C + F
Sbjct: 73 PKSTALIFHSGKMVCTGTKSEQEARIASRKYAKILQKLQYSVSFKEFKIQNMVGSCDVKF 132
Query: 147 AIRILQFSEKHRA-AEYEPELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
IR+ + H YEPEL PG+ YR+ PK L IF +G + +T I
Sbjct: 133 PIRLEGLASTHAVFCSYEPELFPGLIYRMADPKIVLLIFVSGKVVLTGAKKREDI 187
>gi|145352509|ref|XP_001420584.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144580819|gb|ABO98877.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 226
Score = 134 bits (337), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 63/151 (41%), Positives = 100/151 (66%), Gaps = 2/151 (1%)
Query: 45 IINNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTG 103
++ N+V + ++ C L+L+ IA + NVEY + M++R P TTA I+SSGK+ CTG
Sbjct: 32 VLQNIVATVNLDCKLDLKTIAFHARNVEYNPKRFAAAIMRIRNPKTTALIFSSGKMVCTG 91
Query: 104 ATSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKH-RAAEY 162
A +E ++ AAR+YA+ + +LGF A+F +F++ N++G+C + F IR+ + +H A+Y
Sbjct: 92 AKTEALAREAARKYAKVIIKLGFPAQFKDFKIQNMVGSCDVQFPIRLEGLAWQHGHFAQY 151
Query: 163 EPELHPGVTYRITRPKATLKIFSTGGITVTA 193
EPEL PG+ YR+ PK L IF +G I +T
Sbjct: 152 EPELFPGLIYRMQMPKIVLLIFVSGKIVLTG 182
>gi|325182645|emb|CCA17100.1| TATAboxbinding protein putative [Albugo laibachii Nc14]
Length = 270
Score = 134 bits (337), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 70/161 (43%), Positives = 98/161 (60%), Gaps = 2/161 (1%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGA 104
+ NVV + ++ L L+ IAL+ N EY + V M+LR P TTA I+SSGKI TGA
Sbjct: 76 VMNVVGTIDLKTRLELKTIALHARNAEYNPKRFCAVVMRLRDPKTTALIFSSGKIVITGA 135
Query: 105 TSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKH-RAAEYE 163
SE+ ++A R++ R +Q+L F ARF NFR+ N++GT + F+IR+ H R YE
Sbjct: 136 RSEEFCRLAGRKFTRVIQKLHFPARFENFRIQNIMGTSDVHFSIRLEGILNDHARFCSYE 195
Query: 164 PELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKIPVQI 204
PEL PG+ YR+T PK T+ IF +G I DS+ + I
Sbjct: 196 PELFPGLIYRLTEPKLTMLIFVSGKIVFCGAKDSSHLDQAI 236
>gi|339961266|pdb|3OC3|C Chain C, Crystal Structure Of The Mot1 N-Terminal Domain In Complex
With Tbp
gi|339961267|pdb|3OC3|D Chain D, Crystal Structure Of The Mot1 N-Terminal Domain In Complex
With Tbp
gi|339961268|pdb|3OCI|A Chain A, Crystal Structure Of Tbp (Tata Box Binding Protein)
gi|339961269|pdb|3OCI|B Chain B, Crystal Structure Of Tbp (Tata Box Binding Protein)
Length = 218
Score = 134 bits (337), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 64/157 (40%), Positives = 99/157 (63%), Gaps = 2/157 (1%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGA 104
+ NVV + ++ C L+L+ IAL N EY + V M++R+P TTA I++SGK+ TGA
Sbjct: 45 LQNVVATVNLSCKLDLKNIALRARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVITGA 104
Query: 105 TSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKH-RAAEYE 163
SE S++AA+RYA+ + +LGF A F +F++ N++ +C + F+IR+ + H YE
Sbjct: 105 KSEKSSRMAAQRYAKIIHKLGFNATFDDFKIQNIVSSCDIKFSIRLEGLAYAHSNYCSYE 164
Query: 164 PELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
PEL PG+ YR+ +PK L IF +G I +T + I
Sbjct: 165 PELFPGLIYRMVKPKIVLLIFVSGKIVLTGAKVRDDI 201
>gi|259090139|pdb|3EIK|A Chain A, Double Stranded Dna Binding Protein
gi|259090140|pdb|3EIK|B Chain B, Double Stranded Dna Binding Protein
Length = 218
Score = 134 bits (337), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 64/157 (40%), Positives = 99/157 (63%), Gaps = 2/157 (1%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGA 104
+ NVV + ++ C L+L+ IAL N EY + V M++R+P TTA I++SGK+ TGA
Sbjct: 45 LQNVVATVNLSCKLDLKNIALRARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVITGA 104
Query: 105 TSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKH-RAAEYE 163
SE S++AA+RYA+ + +LGF A F +F++ N++ +C + F+IR+ + H YE
Sbjct: 105 KSEKSSRMAAQRYAKIIHKLGFNATFDDFKIQNIVSSCDIKFSIRLEGLAYAHSNYCSYE 164
Query: 164 PELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
PEL PG+ YR+ +PK L IF +G I +T + I
Sbjct: 165 PELFPGLIYRMVKPKIVLLIFVSGKIVLTGAKVRDDI 201
>gi|303389118|ref|XP_003072792.1| eukaryotic TATA box binding transcription initiation factor TFIID-1
[Encephalitozoon intestinalis ATCC 50506]
gi|303301934|gb|ADM11432.1| eukaryotic TATA box binding transcription initiation factor TFIID-1
[Encephalitozoon intestinalis ATCC 50506]
Length = 198
Score = 134 bits (337), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 64/157 (40%), Positives = 99/157 (63%), Gaps = 2/157 (1%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGA 104
+ NVV + ++ C L+L+ IAL N EY + V M++R+P TTA I++SGK+ TGA
Sbjct: 25 LQNVVATVNLNCKLDLKNIALRARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVITGA 84
Query: 105 TSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKH-RAAEYE 163
SE S++AA+RYA+ + +LGF A F +F++ N++ +C + F+IR+ + H YE
Sbjct: 85 KSEKSSRMAAQRYAKIIHKLGFNATFDDFKIQNIVSSCDIKFSIRLEGLAYAHSNYCSYE 144
Query: 164 PELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
PEL PG+ YR+ +PK L IF +G I +T + I
Sbjct: 145 PELFPGLIYRMVKPKIVLLIFVSGKIVLTGAKVRDDI 181
>gi|307206120|gb|EFN84200.1| TATA-box-binding protein [Harpegnathos saltator]
Length = 241
Score = 134 bits (337), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 71/182 (39%), Positives = 111/182 (60%), Gaps = 7/182 (3%)
Query: 18 PPPTQTVVPIQNHAPPQPPAH--DPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYR- 74
P +Q V P Q+ P P H + ++ + NVV + ++ L L I + N EY
Sbjct: 39 PSTSQNVNP-QSMMSPMTPVHSTNEVLEPCLQNVVSTIDLQTELKLMYINVRTRNSEYNP 97
Query: 75 -RENGMVTMKLRKPYTTASIWSSGKITCTGATSEDQSKIAARRYARCLQRLGFKARFTNF 133
R G+V M+++ P TA I+ SGK+ CTGA SED+S +AA+++AR +Q+LGF RFT+F
Sbjct: 98 ARFTGLV-MRIQNPRATALIFRSGKLVCTGARSEDESLLAAKKFARIIQKLGFPVRFTSF 156
Query: 134 RVVNVLGTCSMPFAIRILQFSEKH-RAAEYEPELHPGVTYRITRPKATLKIFSTGGITVT 192
V N++ TC + F I++ ++ H + + YEPEL+PG+TYR+ +P+ L IF G + +T
Sbjct: 157 TVQNIVATCDLKFPIKLESLNQMHGQFSSYEPELYPGLTYRMLKPRVVLLIFVNGKVVIT 216
Query: 193 AC 194
Sbjct: 217 GA 218
Score = 37.7 bits (86), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 32/63 (50%)
Query: 137 NVLGTCSMPFAIRILQFSEKHRAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTACND 196
NV+ T + ++++ + + R +EY P G+ RI P+AT IF +G + T
Sbjct: 70 NVVSTIDLQTELKLMYINVRTRNSEYNPARFTGLVMRIQNPRATALIFRSGKLVCTGARS 129
Query: 197 SNK 199
++
Sbjct: 130 EDE 132
>gi|331686250|gb|AED87005.1| tata box binding protein [Stylonychia lemnae]
Length = 285
Score = 134 bits (336), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 63/159 (39%), Positives = 107/159 (67%), Gaps = 3/159 (1%)
Query: 45 IINNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTG 103
++ N+V + ++ L+LR+IALN N EY + V M++R+P TTA I+SSGK+ CTG
Sbjct: 102 VLQNIVSTANLGIKLDLRKIALNCRNAEYNPKRFAAVIMRIREPKTTALIFSSGKMVCTG 161
Query: 104 ATSEDQSKIAARRYARCLQRLGFK-ARFTNFRVVNVLGTCSMPFAIRILQFSEKH-RAAE 161
A SE+ SK AA++Y++ ++++GF+ +F++ N++G+C + F I + S++H + ++
Sbjct: 162 AKSEEFSKDAAKKYSKAIKKVGFEDVNMQDFKIQNIVGSCDVRFPISLESLSQEHDKFSQ 221
Query: 162 YEPELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
YEPE+ PG+ YR+ PK L IF++G I +T + N I
Sbjct: 222 YEPEIFPGLIYRMANPKIVLLIFASGKIVLTGAKNKNDI 260
>gi|303283248|ref|XP_003060915.1| transcription elongation-nucleosome displacement protein
[Micromonas pusilla CCMP1545]
gi|226457266|gb|EEH54565.1| transcription elongation-nucleosome displacement protein
[Micromonas pusilla CCMP1545]
Length = 249
Score = 133 bits (335), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 66/158 (41%), Positives = 100/158 (63%), Gaps = 4/158 (2%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGA 104
+ N+V + ++ C L+L+ IA + NVEY + M++R P TTA I+SSGK+ CTGA
Sbjct: 46 LQNIVATVNLDCKLDLKTIAFHARNVEYNPKRFAAAIMRIRAPKTTALIFSSGKMVCTGA 105
Query: 105 TSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRI--LQFSEKHRAAEY 162
+E ++ AAR+YA+ + +LGF A+F F++ N++G+C + F IR+ L +S H A+Y
Sbjct: 106 KTEALAREAARKYAKVISKLGFPAQFKEFKIQNMVGSCDVKFPIRLEGLAWSHGH-FAQY 164
Query: 163 EPELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
EPEL PG+ YR+ PK L IF +G I +T I
Sbjct: 165 EPELFPGLIYRMVVPKIVLLIFVSGKIVLTGGKKREDI 202
>gi|4688650|emb|CAB41469.1| TBP-like factor [Caenorhabditis elegans]
Length = 454
Score = 133 bits (334), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 77/197 (39%), Positives = 111/197 (56%), Gaps = 16/197 (8%)
Query: 17 EPPPTQTVVPIQNHAPPQ--------PPAHDPEVDIIINNVVCSFSVRCHLNLRQIALNG 68
EP P + VP PP+ P D ++DI I NVVC++++ H++LR++A+N
Sbjct: 233 EPIPVKIEVP---DVPPEGTSAANEEPMPDDGDIDIQIRNVVCNYTLPLHIDLRKLAMNT 289
Query: 69 VNVEYRRENGMVTMKLRKPYTTASIWSSGKITCTGATSEDQSKIAARRYARCLQRLGFKA 128
NV Y RE G++ + R P ++SSGK+ G SE K AAR AR +QR+ K
Sbjct: 290 HNVTYEREKGVMMKQKRSPGCYIKVYSSGKVYIVGCRSEADCKRAARSIARHVQRVMGKT 349
Query: 129 R----FTNFRVVNVLGTCSMPFAIRILQFSEKH-RAAEYEPELHPGVTYRITRPKATLKI 183
+ N+RV NVL TC +PF I+I + + K+ + YEPEL G+ +R PKATL+I
Sbjct: 350 KERVSIRNYRVNNVLATCRLPFGIKIEEVAAKYPSESTYEPELSVGLVWRSVTPKATLRI 409
Query: 184 FSTGGITVTACNDSNKI 200
+TG ITVT +
Sbjct: 410 HTTGSITVTGAQSEADV 426
>gi|384245994|gb|EIE19486.1| TBP-domain-containing protein [Coccomyxa subellipsoidea C-169]
Length = 245
Score = 133 bits (334), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 61/157 (38%), Positives = 97/157 (61%), Gaps = 2/157 (1%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGA 104
+ N+V + ++ C L+L+ IA N EY + V M++R P TTA +++SGK+ CTGA
Sbjct: 30 LQNIVATVNLDCKLDLKTIAQKARNAEYNPKRFAAVIMRIRDPKTTALVFASGKMVCTGA 89
Query: 105 TSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKHRA-AEYE 163
SE+ ++ AAR+YA+ +Q+L F A F +F++ N++G+C + F IR+ + H + YE
Sbjct: 90 KSEEHARTAARKYAKIIQKLDFPATFKDFKIQNIVGSCDVKFPIRLEGLNYSHGMFSSYE 149
Query: 164 PELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
PEL PG+ YR+ PK L IF +G + +T I
Sbjct: 150 PELFPGLIYRMKEPKVVLLIFVSGKVVLTGGKKREDI 186
>gi|17509361|ref|NP_492356.1| Protein TLF-1, isoform a [Caenorhabditis elegans]
gi|7329167|gb|AAF59926.1| TBP-like factor [Caenorhabditis elegans]
gi|14530454|emb|CAB03082.2| Protein TLF-1, isoform a [Caenorhabditis elegans]
Length = 505
Score = 133 bits (334), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 77/197 (39%), Positives = 111/197 (56%), Gaps = 16/197 (8%)
Query: 17 EPPPTQTVVPIQNHAPPQ--------PPAHDPEVDIIINNVVCSFSVRCHLNLRQIALNG 68
EP P + VP PP+ P D ++DI I NVVC++++ H++LR++A+N
Sbjct: 233 EPIPVKIEVP---DVPPEGTSAANEEPMPDDGDIDIQIRNVVCNYTLPLHIDLRKLAMNT 289
Query: 69 VNVEYRRENGMVTMKLRKPYTTASIWSSGKITCTGATSEDQSKIAARRYARCLQRLGFKA 128
NV Y RE G++ + R P ++SSGK+ G SE K AAR AR +QR+ K
Sbjct: 290 HNVTYEREKGVMMKQKRSPGCYIKVYSSGKVYIVGCRSEADCKRAARSIARHVQRVMGKT 349
Query: 129 R----FTNFRVVNVLGTCSMPFAIRILQFSEKH-RAAEYEPELHPGVTYRITRPKATLKI 183
+ N+RV NVL TC +PF I+I + + K+ + YEPEL G+ +R PKATL+I
Sbjct: 350 KERVSIRNYRVNNVLATCRLPFGIKIEEVAAKYPSESTYEPELSVGLVWRSVTPKATLRI 409
Query: 184 FSTGGITVTACNDSNKI 200
+TG ITVT +
Sbjct: 410 HTTGSITVTGAQSEADV 426
>gi|193202769|ref|NP_001122474.1| Protein TLF-1, isoform b [Caenorhabditis elegans]
gi|172052151|emb|CAQ35044.1| Protein TLF-1, isoform b [Caenorhabditis elegans]
Length = 508
Score = 133 bits (334), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 77/197 (39%), Positives = 111/197 (56%), Gaps = 16/197 (8%)
Query: 17 EPPPTQTVVPIQNHAPPQ--------PPAHDPEVDIIINNVVCSFSVRCHLNLRQIALNG 68
EP P + VP PP+ P D ++DI I NVVC++++ H++LR++A+N
Sbjct: 236 EPIPVKIEVP---DVPPEGTSAANEEPMPDDGDIDIQIRNVVCNYTLPLHIDLRKLAMNT 292
Query: 69 VNVEYRRENGMVTMKLRKPYTTASIWSSGKITCTGATSEDQSKIAARRYARCLQRLGFKA 128
NV Y RE G++ + R P ++SSGK+ G SE K AAR AR +QR+ K
Sbjct: 293 HNVTYEREKGVMMKQKRSPGCYIKVYSSGKVYIVGCRSEADCKRAARSIARHVQRVMGKT 352
Query: 129 R----FTNFRVVNVLGTCSMPFAIRILQFSEKH-RAAEYEPELHPGVTYRITRPKATLKI 183
+ N+RV NVL TC +PF I+I + + K+ + YEPEL G+ +R PKATL+I
Sbjct: 353 KERVSIRNYRVNNVLATCRLPFGIKIEEVAAKYPSESTYEPELSVGLVWRSVTPKATLRI 412
Query: 184 FSTGGITVTACNDSNKI 200
+TG ITVT +
Sbjct: 413 HTTGSITVTGAQSEADV 429
>gi|4688630|emb|CAB41467.1| TBP-like factor [Brugia malayi]
Length = 295
Score = 132 bits (333), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 75/196 (38%), Positives = 114/196 (58%), Gaps = 15/196 (7%)
Query: 8 TTHSSHSEQEPPPTQTVVPIQNHAPPQPPAHDPEVDII-----INNVVCSFSVRCHLNLR 62
T + +E+ PP T + + ++ + D E+DI I NVVC++++ H++L
Sbjct: 13 TGYEEQTEEAPPSTSSELADRDDSD-----EDGEIDIQCFEFQIRNVVCNYTLPLHIDLH 67
Query: 63 QIALNGVNVEYRRENGMVTMKLRKPYTTASIWSSGKITCTGATSEDQSKIAARRYARCLQ 122
++ALN NV + R G++ + R P I+SSGKI G SE + K AAR AR +Q
Sbjct: 68 RVALNSGNVAFDRGRGVLLKQKRNPSCYVKIYSSGKIYIVGCRSESECKRAARGVARMVQ 127
Query: 123 RLGFK----ARFTNFRVVNVLGTCSMPFAIRILQFSEKH-RAAEYEPELHPGVTYRITRP 177
+ K R N+RV NVL TC MPF ++I + ++K+ ++YEPEL G+ +R T P
Sbjct: 128 KTMGKMMDVVRIRNYRVCNVLATCKMPFGVKIEELAQKYPDCSQYEPELSVGLIWRSTNP 187
Query: 178 KATLKIFSTGGITVTA 193
+ATL+I +TG ITVT
Sbjct: 188 RATLRIHTTGSITVTG 203
>gi|330038400|ref|XP_003239586.1| TATA binding protein of transcription factor IID [Cryptomonas
paramecium]
gi|327206510|gb|AEA38688.1| TATA binding protein of transcription factor IID [Cryptomonas
paramecium]
Length = 231
Score = 132 bits (333), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 67/158 (42%), Positives = 98/158 (62%), Gaps = 3/158 (1%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGA 104
I NVV + ++ L+L++IA+ N E+ R V M++R+P TTA I+SSGKI TGA
Sbjct: 57 IQNVVATVNLGIQLDLKRIAIKARNAEFNPRRFAAVIMRIREPKTTALIFSSGKIVVTGA 116
Query: 105 TSEDQSKIAARRYARCLQRLGF-KARFTNFRVVNVLGTCSMPFAIRILQFSEKH-RAAEY 162
SED S+IA ++Y R +QRLG+ A+F NFR+ N++ +C + F IR+ + H + Y
Sbjct: 117 KSEDTSRIACKKYTRIIQRLGYGHAKFLNFRIQNIVASCDVRFPIRLESLAHAHNQFCSY 176
Query: 163 EPELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
EPEL PG+ YR+ PK L IF +G + +T I
Sbjct: 177 EPELFPGLIYRMINPKVVLLIFVSGKLVLTGAKQRKDI 214
>gi|170590131|ref|XP_001899826.1| TBP-like factor [Brugia malayi]
gi|158592745|gb|EDP31342.1| TBP-like factor, putative [Brugia malayi]
Length = 401
Score = 132 bits (332), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 76/196 (38%), Positives = 112/196 (57%), Gaps = 15/196 (7%)
Query: 8 TTHSSHSEQEPPPTQTVVPIQNHAPPQPPAHDPEVDII-----INNVVCSFSVRCHLNLR 62
T + +E+ PP T + + A D E+DI I NVVC++++ H++L
Sbjct: 119 TGYEEQTEEAPPSTSSEL-----ADRDDSDEDGEIDIQCFEFQIRNVVCNYTLPLHIDLH 173
Query: 63 QIALNGVNVEYRRENGMVTMKLRKPYTTASIWSSGKITCTGATSEDQSKIAARRYARCLQ 122
++ALN NV + R G++ + R P I+SSGKI G SE + K AAR AR +Q
Sbjct: 174 RVALNSGNVAFDRGRGVLLKQKRNPSCYVKIYSSGKIYIVGCRSESECKRAARGVARMVQ 233
Query: 123 RLGFK----ARFTNFRVVNVLGTCSMPFAIRILQFSEKH-RAAEYEPELHPGVTYRITRP 177
+ K R N+RV NVL TC MPF ++I + ++K+ ++YEPEL G+ +R T P
Sbjct: 234 KTMGKMMDVVRIRNYRVCNVLATCKMPFGVKIEELAQKYPDCSQYEPELSVGLIWRSTNP 293
Query: 178 KATLKIFSTGGITVTA 193
+ATL+I +TG ITVT
Sbjct: 294 RATLRIHTTGSITVTG 309
>gi|169806112|ref|XP_001827801.1| transcription initiation factor TFIID [Enterocytozoon bieneusi
H348]
gi|161779087|gb|EDQ31113.1| transcription initiation factor TFIID [Enterocytozoon bieneusi
H348]
Length = 233
Score = 132 bits (331), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 63/151 (41%), Positives = 98/151 (64%), Gaps = 2/151 (1%)
Query: 45 IINNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTG 103
I+ NVV + ++ C L+L+ IAL+ N EY ++ V M++R+P TTA I++SGK+ TG
Sbjct: 59 ILQNVVATVNLNCKLDLKSIALHARNAEYNPKKFAAVIMRIREPKTTALIFASGKMVVTG 118
Query: 104 ATSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKH-RAAEY 162
A SE S+IA++RY++ +Q+LGF F +F V N++ +C + F I++ + H Y
Sbjct: 119 AKSEKASRIASQRYSKIIQKLGFSVYFDSFTVQNIVSSCDLKFPIKLEGLAYAHSNYCSY 178
Query: 163 EPELHPGVTYRITRPKATLKIFSTGGITVTA 193
EPEL PG+ YR+ +PK L IF +G I +T
Sbjct: 179 EPELFPGLIYRMVKPKIVLLIFVSGKIVLTG 209
>gi|312069507|ref|XP_003137714.1| hypothetical protein LOAG_02128 [Loa loa]
gi|307767124|gb|EFO26358.1| hypothetical protein LOAG_02128 [Loa loa]
Length = 401
Score = 131 bits (330), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 72/174 (41%), Positives = 104/174 (59%), Gaps = 11/174 (6%)
Query: 31 APPQPPAH------DPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYRRENGMVTMKL 84
APP + D E+DI I NVVC++++ H++L ++AL+ NV + R G++ +
Sbjct: 137 APPSTSSETVDRDEDGEIDIQIRNVVCNYTLPLHIDLHRVALSSGNVAFDRGRGVLLKQK 196
Query: 85 RKPYTTASIWSSGKITCTGATSEDQSKIAARRYARCLQ----RLGFKARFTNFRVVNVLG 140
R P I+SSGKI G SE K AAR AR +Q R+ R N+RV NVL
Sbjct: 197 RNPSCYVKIYSSGKIYIVGCRSESDCKRAARGVARMVQKSMGRMMDVVRIRNYRVCNVLA 256
Query: 141 TCSMPFAIRILQFSEKH-RAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTA 193
TC MPF ++I + ++K+ ++YEPEL G+ +R T P+ATL+I +TG ITVT
Sbjct: 257 TCKMPFGVKIEELAQKYPDCSQYEPELSVGLIWRSTNPRATLRIHTTGSITVTG 310
>gi|242014208|ref|XP_002427783.1| trf2 protein, putative [Pediculus humanus corporis]
gi|212512252|gb|EEB15045.1| trf2 protein, putative [Pediculus humanus corporis]
Length = 231
Score = 131 bits (330), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 67/165 (40%), Positives = 101/165 (61%), Gaps = 4/165 (2%)
Query: 39 DPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYR--RENGMVTMKLRKPYTTASIWSS 96
D I + NVV + ++ L+LR+I N EY R G+V M++R+P TTA I+ S
Sbjct: 51 DSRPAITLQNVVATVNLMNELDLRKINFCTRNTEYNPSRFKGLV-MRIREPKTTALIFRS 109
Query: 97 GKITCTGATSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEK 156
GKI TGA SED + +AAR+YAR +Q+LGF +F +F++ N++GTC + F I++ ++
Sbjct: 110 GKIVVTGAKSEDAALLAARKYARIIQKLGFSIKFCSFKIQNIVGTCDVRFPIKLESLNQI 169
Query: 157 H-RAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
H + + YEPEL P + YR+ +P+ L IF G I +T I
Sbjct: 170 HGQFSSYEPELFPALIYRLVKPRVVLLIFVNGKIVLTGARTQQDI 214
>gi|440494309|gb|ELQ76708.1| TATA-box binding protein (TBP), component of TFIID and TFIIIB
[Trachipleistophora hominis]
Length = 234
Score = 131 bits (329), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 64/157 (40%), Positives = 96/157 (61%), Gaps = 2/157 (1%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGA 104
+ NVV + ++ C L L+ IAL N EY + V M++R P TTA I++SGK+ TGA
Sbjct: 61 LQNVVATVNLECRLELKVIALRARNAEYNPKRFAAVIMRIRDPKTTALIFASGKMVITGA 120
Query: 105 TSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKH-RAAEYE 163
SE S+IAA++YAR + +LGF +F++F++ N++ +C F IR+ + H YE
Sbjct: 121 KSEQASRIAAKKYARIIHKLGFNTQFSDFKIQNIVSSCDTKFNIRLEGLAYAHSNFCSYE 180
Query: 164 PELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
PEL PG+ YR+ PK L IF +G I +T ++I
Sbjct: 181 PELFPGLIYRMVNPKIVLLIFVSGKIVLTGAKVRDEI 217
>gi|429964398|gb|ELA46396.1| TATA-box-binding protein [Vavraia culicis 'floridensis']
Length = 201
Score = 130 bits (328), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 64/157 (40%), Positives = 96/157 (61%), Gaps = 2/157 (1%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGA 104
+ NVV + ++ C L L+ IAL N EY + V M++R P TTA I++SGK+ TGA
Sbjct: 28 LQNVVATVNLECRLELKVIALRARNAEYNPKRFAAVIMRIRDPKTTALIFASGKMVITGA 87
Query: 105 TSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKH-RAAEYE 163
SE S+IAA++YAR + +LGF +F++F++ N++ +C F IR+ + H YE
Sbjct: 88 KSEQASRIAAKKYARIIHKLGFNTQFSDFKIQNIVSSCDTKFNIRLEGLAYAHSNFCSYE 147
Query: 164 PELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
PEL PG+ YR+ PK L IF +G I +T ++I
Sbjct: 148 PELFPGLIYRMVNPKIVLLIFVSGKIVLTGAKVRDEI 184
>gi|242039091|ref|XP_002466940.1| hypothetical protein SORBIDRAFT_01g017130 [Sorghum bicolor]
gi|241920794|gb|EER93938.1| hypothetical protein SORBIDRAFT_01g017130 [Sorghum bicolor]
Length = 225
Score = 130 bits (327), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 66/176 (37%), Positives = 106/176 (60%), Gaps = 12/176 (6%)
Query: 37 AHDPEVDII---------INNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRK 86
AH P VD+ + N+V + ++ C L+L+QIA N EY + V +++R
Sbjct: 28 AHQPGVDLARHPSGFVPTLQNIVSTVNLGCKLDLQQIASGARNAEYNPKRFAAVIVRIRD 87
Query: 87 PYTTASIWSSGKITCTGATSEDQSKIAARRYARCLQRLGFK-ARFTNFRVVNVLGTCSMP 145
P TTA +++SGK+ CTGA SE+ S++A R++AR + +LGF+ ARF +F++ N++G+C +
Sbjct: 88 PKTTALVFASGKMVCTGAKSEEHSRLAGRKFARIVHKLGFQSARFKDFKIQNIVGSCDVK 147
Query: 146 FAIRILQFS-EKHRAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
F IR+ + A YEPE+ PG+ YR+ PK + IF +G I +T +I
Sbjct: 148 FPIRLEGLALASGTFANYEPEIFPGLIYRMVEPKIVILIFVSGKIVLTGAKVREEI 203
>gi|387592277|gb|EIJ87301.1| TATA-box binding protein [Nematocida parisii ERTm3]
gi|387596323|gb|EIJ93945.1| TATA-box binding protein [Nematocida parisii ERTm1]
Length = 189
Score = 130 bits (327), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 64/158 (40%), Positives = 102/158 (64%), Gaps = 4/158 (2%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGA 104
I N+V + ++ C L+L+ IAL N EY + V +++RKP TTA I++SGK+ TGA
Sbjct: 16 IQNIVATVNLCCRLDLKAIALGARNAEYNPKRFAAVIIRIRKPRTTALIFASGKMVVTGA 75
Query: 105 TSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRI--LQFSEKHRAAEY 162
SE+ SKIAA++Y+ ++RLG+ RFT F++ N++ +C F+IR+ L F + ++ Y
Sbjct: 76 RSEEDSKIAAKKYSIIIRRLGYPVRFTEFKIQNIVSSCDTKFSIRLEGLVFGHSNYSS-Y 134
Query: 163 EPELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
EPEL PG+ YR+ +PK L +F +G + +T +I
Sbjct: 135 EPELFPGLIYRMVKPKIVLLVFVSGKVVLTGAKHREEI 172
>gi|345492218|ref|XP_001603648.2| PREDICTED: TATA-box-binding protein-like [Nasonia vitripennis]
Length = 238
Score = 130 bits (327), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 69/186 (37%), Positives = 108/186 (58%), Gaps = 5/186 (2%)
Query: 19 PPTQTVVPIQNHAPPQPPAHDPE-VDIIINNVVCSFSVRCHLNLRQIALNGVNVEYR--R 75
P T P + P P + E VD ++ NVV + S+ C LNL I N EY R
Sbjct: 37 PSTSQANPQASMTPMVPASGGKELVDPMLQNVVSTVSLGCELNLTYINTRTRNSEYNPAR 96
Query: 76 ENGMVTMKLRKPYTTASIWSSGKITCTGATSEDQSKIAARRYARCLQRLGFKARFTNFRV 135
G++ M++R P TA I+ SGK+ CTGA E+ S +AA+++AR +Q++GF +F +F++
Sbjct: 97 FTGLI-MRIRNPRVTALIFRSGKLVCTGARCEEDSFLAAKKFARIIQKIGFPVKFRDFKI 155
Query: 136 VNVLGTCSMPFAIRILQFSEKH-RAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTAC 194
N++ T + F I++ S KH + + YEPEL+PG+ YR+ P+ L IF G I +T
Sbjct: 156 QNIVATADLKFPIKLENLSHKHGQFSSYEPELYPGLIYRMVLPRVVLLIFVNGKIVLTGA 215
Query: 195 NDSNKI 200
+ ++
Sbjct: 216 KNRQEL 221
>gi|116195450|ref|XP_001223537.1| hypothetical protein CHGG_04323 [Chaetomium globosum CBS 148.51]
gi|88180236|gb|EAQ87704.1| hypothetical protein CHGG_04323 [Chaetomium globosum CBS 148.51]
Length = 242
Score = 130 bits (326), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 68/158 (43%), Positives = 100/158 (63%), Gaps = 2/158 (1%)
Query: 45 IINNVVCSFSVRCHLNLRQIALNGVNVEY-RRENGMVTMKLRKPYTTASIWSSGKITCTG 103
II NVV + + C L+LR I+ NVEY RR+ + M++R+P TT ++SSGK+ TG
Sbjct: 36 IIQNVVATVDLGCRLDLRLISEQARNVEYNRRKFHALIMRIREPRTTTLVFSSGKMVITG 95
Query: 104 ATSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKHR-AAEY 162
A SE +K+AAR++AR LQ+ GF F++F+V N +G+ + F IR+ + + +R +A Y
Sbjct: 96 AKSEALAKLAARKHARALQKCGFGTGFSDFKVQNYVGSATCDFLIRLERIAHMYRESAMY 155
Query: 163 EPELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
EPEL PG+ Y + RPK +FSTG I +T I
Sbjct: 156 EPELFPGLVYTMLRPKLKCLVFSTGKIVLTGAKAVEDI 193
>gi|331686254|gb|AED87007.1| tata box binding protein [Sterkiella nova]
Length = 301
Score = 130 bits (326), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 61/158 (38%), Positives = 102/158 (64%), Gaps = 3/158 (1%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGA 104
+ N+V + ++ L LR+IA+N N EY R V M++R+P TTA I+ SGK+ CTGA
Sbjct: 113 LQNIVSTANLGVELKLREIAMNCRNAEYNPRRFAAVIMRIREPKTTALIFRSGKMVCTGA 172
Query: 105 TSEDQSKIAARRYARCLQRLGFK-ARFTNFRVVNVLGTCSMPFAIRILQFSEKH-RAAEY 162
SE+ S+ AA++Y++ ++++GF+ +F++ N++G+C + F I + S H + ++Y
Sbjct: 173 KSEELSRDAAKKYSKAIKKVGFEDVNMQDFKIQNIVGSCDVGFPISLESLSSAHDKFSQY 232
Query: 163 EPELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
EPE+ PG+ YR+ PK L IF++G I +T + N I
Sbjct: 233 EPEIFPGLIYRMATPKIVLLIFASGKIVLTGAKNKNDI 270
>gi|6063008|gb|AAF03091.1|AF144035_1 transcription initiation factor TFIID [Antonospora locustae]
Length = 259
Score = 130 bits (326), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 64/162 (39%), Positives = 101/162 (62%), Gaps = 4/162 (2%)
Query: 43 DII--INNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKI 99
DI+ + NVV + ++ C L+L+ IAL N EY + V M++R P TTA I++SGK+
Sbjct: 81 DILPALQNVVATVNLNCKLDLKAIALRARNAEYNPKRFAAVIMRIRDPKTTALIFASGKM 140
Query: 100 TCTGATSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKH-R 158
TGA SE SK+AA++++R + +LGF +F +F++ N++ +C F+IR+ + H
Sbjct: 141 VVTGAKSEQTSKLAAQKFSRIIHKLGFNTKFADFKIQNIVSSCDTQFSIRLEGLAFAHSN 200
Query: 159 AAEYEPELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
YEPEL PG+ YR+ +PK L IF +G I +T ++I
Sbjct: 201 FCSYEPELFPGLIYRMVKPKIVLLIFVSGKIVLTGAKMRDEI 242
>gi|331686252|gb|AED87006.1| tata box binding protein [Sterkiella histriomuscorum]
Length = 299
Score = 129 bits (325), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 63/159 (39%), Positives = 104/159 (65%), Gaps = 3/159 (1%)
Query: 45 IINNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTG 103
I+ N+V + ++ L+LR+IALN N EY R V M++R+P TTA I+SSGK+ TG
Sbjct: 110 ILQNIVSTANLGMKLDLRKIALNCRNAEYNPRRFAAVIMRIREPKTTALIFSSGKMVRTG 169
Query: 104 ATSEDQSKIAARRYARCLQRLGFK-ARFTNFRVVNVLGTCSMPFAIRILQFSEKH-RAAE 161
A SE+ S+ AA++Y++ ++++GF+ +F++ N++G+C + F I + S H + ++
Sbjct: 170 AKSEEFSRDAAKKYSKAIKKVGFEDVNMQDFKIQNIVGSCDVGFPISLESLSSAHDKFSQ 229
Query: 162 YEPELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
YEPE+ PG+ YR+ PK L IF++G I +T + N I
Sbjct: 230 YEPEIFPGLIYRMATPKIVLLIFASGKIVLTGAKNKNDI 268
>gi|308809792|ref|XP_003082205.1| transcription initiation factor tbp1-maize (ISS) [Ostreococcus
tauri]
gi|116060673|emb|CAL57151.1| transcription initiation factor tbp1-maize (ISS) [Ostreococcus
tauri]
Length = 258
Score = 129 bits (325), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 68/176 (38%), Positives = 103/176 (58%), Gaps = 23/176 (13%)
Query: 41 EVDIIINNVVCSFSVRCHLNLRQIALNGVNVEY------------------RRENGM--- 79
E D + N+V + ++ C L+L+ IA + NVEY R EN
Sbjct: 44 ETDDVRRNIVATVNLDCKLDLKTIAFHARNVEYNPKVRRATRAPTLGEPTRRDENDFRFA 103
Query: 80 -VTMKLRKPYTTASIWSSGKITCTGATSEDQSKIAARRYARCLQRLGFKARFTNFRVVNV 138
M++R P TTA I+SSGK+ CTGA +E ++ AAR+YA+ + +LGF A+F +F++ N+
Sbjct: 104 AAIMRIRNPKTTALIFSSGKMVCTGAKTEALAREAARKYAKVIIKLGFPAQFKDFKIQNM 163
Query: 139 LGTCSMPFAIRILQFSEKH-RAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTA 193
+G+C + F IR+ + +H A+YEPEL PG+ YR+ PK L IF +G I +T
Sbjct: 164 VGSCDVQFPIRLEGLAWQHGHFAQYEPELFPGLIYRMQMPKIVLLIFVSGKIVLTG 219
>gi|160331843|ref|XP_001712628.1| tfIID [Hemiselmis andersenii]
gi|159766077|gb|ABW98303.1| tfIID [Hemiselmis andersenii]
Length = 267
Score = 129 bits (323), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 64/158 (40%), Positives = 97/158 (61%), Gaps = 3/158 (1%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGA 104
+ NVV + S+ L+L++IAL N EY R V M++R P TTA I+SSGK+ TGA
Sbjct: 93 VQNVVSTVSLGIQLDLKRIALKARNAEYNPRRFAAVIMRIRDPKTTALIFSSGKMVITGA 152
Query: 105 TSEDQSKIAARRYARCLQRLGF-KARFTNFRVVNVLGTCSMPFAIRILQFSEKH-RAAEY 162
SE+ +K+ ++YAR +QRLG+ +F +FR+ N++ +C + F IR+ + H + Y
Sbjct: 153 KSEEAAKLGCKKYARIIQRLGYGHVKFLDFRIQNIVASCDVKFPIRLESLAHAHNQFCSY 212
Query: 163 EPELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
EPEL PG+ YR+ PK L IF +G + +T + I
Sbjct: 213 EPELFPGLIYRMITPKVVLLIFVSGKLVLTGAKERKDI 250
>gi|332374320|gb|AEE62301.1| unknown [Dendroctonus ponderosae]
Length = 243
Score = 129 bits (323), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 66/171 (38%), Positives = 102/171 (59%), Gaps = 4/171 (2%)
Query: 33 PQPPAHDPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEY--RRENGMVTMKLRKPYTT 90
P P +P +I + N V + + LNL+ I N E+ +R +G++ M++R+P TT
Sbjct: 57 PGLPTGEPYTNIALQNCVATVDMHTTLNLQLINAKTRNTEFNPQRFHGLI-MRIREPKTT 115
Query: 91 ASIWSSGKITCTGATSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRI 150
A I+ SGKI CTGA +E + IA++++AR +Q+LGF +F NF+V N++ TC + F I++
Sbjct: 116 ALIFRSGKIVCTGARNEFDALIASKKFARVIQKLGFHIKFANFKVQNLVATCDLKFPIKL 175
Query: 151 LQFSEKH-RAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
+ H + + YEPEL PG+ YR+ +PK L IF G I T I
Sbjct: 176 ENLNHMHGQFSSYEPELFPGLVYRMIKPKIVLLIFVNGKIVFTGGKSREDI 226
>gi|157126257|ref|XP_001654561.1| TATA binding protein, putative [Aedes aegypti]
gi|108882533|gb|EAT46758.1| AAEL002079-PA [Aedes aegypti]
Length = 234
Score = 128 bits (322), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 72/197 (36%), Positives = 112/197 (56%), Gaps = 7/197 (3%)
Query: 7 TTTHSSHSEQEPPPTQTVVPIQNHAPPQPPAHDPEVDIIINNVVCSFSVRCHLNLRQIAL 66
T SS + PP ++V +Q P P + I++ N V + S+ C LNL+ I
Sbjct: 25 TAGFSSMMHSKLPPQSSMV-MQTPMPTGP--QEAINSILVRNCVATVSLGCELNLQAINF 81
Query: 67 NGVNVEYR--RENGMVTMKLRKPYTTASIWSSGKITCTGATSEDQSKIAARRYARCLQRL 124
N EY R +G+V M++R+P TA ++ SGKI CTGA +E + +AAR++AR +Q+L
Sbjct: 82 RLRNSEYNPARFHGVV-MRIREPRCTALVFRSGKIVCTGARNEADAYLAARKFARIIQKL 140
Query: 125 GFKARFTNFRVVNVLGTCSMPFAIRILQFSEKH-RAAEYEPELHPGVTYRITRPKATLKI 183
G+ RF F+V N++ T + F IR+ ++ H + + YEPEL PG+ YR+ +P+ L I
Sbjct: 141 GYSVRFIEFKVQNLVATVDLRFPIRLENLNQVHGQFSSYEPELFPGLIYRMVKPRVVLLI 200
Query: 184 FSTGGITVTACNDSNKI 200
F G I T ++
Sbjct: 201 FVNGKIVFTGAKSEREV 217
>gi|313226921|emb|CBY22066.1| unnamed protein product [Oikopleura dioica]
Length = 155
Score = 128 bits (322), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 59/133 (44%), Positives = 90/133 (67%), Gaps = 2/133 (1%)
Query: 70 NVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGATSEDQSKIAARRYARCLQRLGFKA 128
N EY + V M++R+P TTA I+SSGK+ CTGA SE++S++AAR+YAR +Q+LGF A
Sbjct: 5 NAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKSEEKSRLAARKYARVIQKLGFPA 64
Query: 129 RFTNFRVVNVLGTCSMPFAIRILQFSEKH-RAAEYEPELHPGVTYRITRPKATLKIFSTG 187
+F +F++ N++G+ + FAIR+ Q H + +EPEL PG+ YR+ +PK L IF +G
Sbjct: 65 KFKDFKIQNMVGSVDVKFAIRLEQLVLNHAQFTSFEPELFPGLVYRMIKPKLVLLIFVSG 124
Query: 188 GITVTACNDSNKI 200
+ +T +I
Sbjct: 125 KVVLTGAKQRKEI 137
>gi|341886263|gb|EGT42198.1| hypothetical protein CAEBREN_08601 [Caenorhabditis brenneri]
Length = 210
Score = 128 bits (321), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 64/158 (40%), Positives = 100/158 (63%), Gaps = 2/158 (1%)
Query: 45 IINNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTG 103
II NVV + S+ L+L +IALNG N+EY G M++R P TT I+SSGKI C G
Sbjct: 39 IIENVVSTISLGVPLDLEKIALNGRNIEYNPSRFGAAIMRIRNPRTTGLIFSSGKIVCAG 98
Query: 104 ATSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKH-RAAEY 162
A SE+ + A+R+YAR +++LG++A+ F + N++ TC++ F+I + S H + +
Sbjct: 99 AKSEESCRRASRKYARIVEKLGYQAKSVVFEIQNIVATCNVRFSINLGGISFTHLKFCTF 158
Query: 163 EPELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
EPE+ PG+ YR+ +PK T+ IF +G + +T + I
Sbjct: 159 EPEIFPGLHYRMLQPKVTIVIFPSGKLNITGAKNKEDI 196
>gi|402470285|gb|EJW04618.1| TATA-box-binding protein [Edhazardia aedis USNM 41457]
Length = 198
Score = 128 bits (321), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 64/158 (40%), Positives = 96/158 (60%), Gaps = 2/158 (1%)
Query: 45 IINNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTG 103
II NVV + ++ HL L+ IA N EY + V M++R+P TTA I+SSGK+ TG
Sbjct: 24 IIQNVVATVNLGHHLTLQDIAYKTRNAEYNPKRFAAVIMRIREPKTTALIFSSGKMVVTG 83
Query: 104 ATSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKHR-AAEY 162
A SE S AAR++AR +Q+ GF A+F ++++ N++ +C + F +R+ + H Y
Sbjct: 84 AKSEASSMFAARKFARIIQKAGFPAKFKDYKIQNIVSSCDIKFNVRLEGLAFMHGPYCSY 143
Query: 163 EPELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
EPEL PG+ YR+ +PK L IF +G I +T +I
Sbjct: 144 EPELFPGLIYRMVKPKIVLLIFVSGKIVITGAKAREEI 181
>gi|195035545|ref|XP_001989238.1| GH11614 [Drosophila grimshawi]
gi|193905238|gb|EDW04105.1| GH11614 [Drosophila grimshawi]
Length = 220
Score = 128 bits (321), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 69/205 (33%), Positives = 113/205 (55%), Gaps = 24/205 (11%)
Query: 4 AGMTTTHSSHSEQEPPPTQTVVPIQNHAPPQPPA-----HDPEVDIIINNVVCSFSVRCH 58
+ +TTTH+ HS +P Q PA D + +I + N+V +FSV C
Sbjct: 15 SALTTTHNPHSALQP---------------QQPAILTEPKDAQHEIKLQNIVATFSVDCE 59
Query: 59 LNLRQIALNGVNVEY--RRENGMVTMKLRKPYTTASIWSSGKITCTGATSEDQSKIAARR 116
L+L+ I N EY +R G V M++ P TA I+ +GK+ CTGA +E ++ + +R+
Sbjct: 60 LDLKTINSRTRNSEYTPKRFRG-VIMRMHSPRCTALIFRTGKVICTGARNEIEANMGSRK 118
Query: 117 YARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKH-RAAEYEPELHPGVTYRIT 175
+AR LQ+LGF +F ++++ N++ T + F IR+ ++ H + + YEPE+ PG+ YR+
Sbjct: 119 FARILQKLGFPVKFVDYKLQNIVATVDLRFPIRLENLNQVHGQFSSYEPEMFPGLIYRMV 178
Query: 176 RPKATLKIFSTGGITVTACNDSNKI 200
+P+ L IF G + T I
Sbjct: 179 KPRLVLLIFVNGKVVFTGAKSRKDI 203
>gi|326497179|dbj|BAK02174.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 137
Score = 127 bits (320), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 56/120 (46%), Positives = 85/120 (70%), Gaps = 1/120 (0%)
Query: 82 MKLRKPYTTASIWSSGKITCTGATSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGT 141
M++R+P TTA I++SGK+ TGA SED SK+A+R+YAR +Q+LGF A+FT+F++ N++G+
Sbjct: 1 MRIREPKTTALIFASGKMVVTGAKSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGS 60
Query: 142 CSMPFAIRILQFSEKHR-AAEYEPELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
C + F IR+ + +H + YEPEL PG+ YR+ +PK L IF +G I +T +I
Sbjct: 61 CDIKFPIRLEGLASRHHNFSSYEPELFPGLIYRMIKPKIVLLIFVSGKIVLTGAKVREEI 120
>gi|119187015|ref|XP_001244114.1| hypothetical protein CIMG_03555 [Coccidioides immitis RS]
Length = 137
Score = 127 bits (319), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 56/120 (46%), Positives = 85/120 (70%), Gaps = 1/120 (0%)
Query: 82 MKLRKPYTTASIWSSGKITCTGATSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGT 141
M++R+P TTA I++SGK+ TGA SED SK+A+R+YAR +Q+LGF A+FT+F++ N++G+
Sbjct: 1 MRIREPKTTALIFASGKMVVTGAKSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGS 60
Query: 142 CSMPFAIRILQFSEKHR-AAEYEPELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
C + F IR+ + +H + YEPEL PG+ YR+ +PK L IF +G I +T +I
Sbjct: 61 CDIKFPIRLEGLASRHHNFSSYEPELFPGLIYRMMKPKIVLLIFVSGKIVLTGAKVREEI 120
>gi|440295403|gb|ELP88316.1| TATA-box-binding protein, putative [Entamoeba invadens IP1]
Length = 236
Score = 127 bits (319), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 62/160 (38%), Positives = 98/160 (61%), Gaps = 6/160 (3%)
Query: 45 IINNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTG 103
II N+V + + C++NL+ + N EY + G + +++ P TTA ++ SGK+ TG
Sbjct: 60 IIQNIVATVELDCNVNLQDVVRRVRNAEYNPKRFGALIIRITNPKTTALVFHSGKLVITG 119
Query: 104 ATSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAI---RILQFSEKHRAA 160
+ D S++A R+YAR LQRLG++ +F +F+V NV+ +C M FAI ++ S K+
Sbjct: 120 GKTIDDSRLAGRKYARILQRLGYEVKFNHFKVQNVVASCDMKFAISLRDLITLSPKN--T 177
Query: 161 EYEPELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
+YEPE+ PGV YR+ PK L IF++G I T + +I
Sbjct: 178 KYEPEIFPGVVYRLAEPKMVLLIFASGKIVFTGGKEVEQI 217
>gi|413933536|gb|AFW68087.1| TATA-binding protein2 [Zea mays]
Length = 139
Score = 127 bits (318), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 57/115 (49%), Positives = 83/115 (72%), Gaps = 1/115 (0%)
Query: 82 MKLRKPYTTASIWSSGKITCTGATSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGT 141
M++R+P TTA I++SGK+ CTGA SE QSK+AAR+YAR +Q+LGF A+F +F++ N++G+
Sbjct: 1 MRIREPKTTALIFASGKMVCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGS 60
Query: 142 CSMPFAIRILQFSEKHRA-AEYEPELHPGVTYRITRPKATLKIFSTGGITVTACN 195
C + F IR+ + H A + YEPEL PG+ YR+ +PK L IF +G I +T
Sbjct: 61 CDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLTGAK 115
>gi|331686256|gb|AED87008.1| tata box binding protein [Nyctotherus ovalis]
Length = 195
Score = 127 bits (318), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 60/157 (38%), Positives = 96/157 (61%), Gaps = 2/157 (1%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGA 104
+ N+V + ++ C L+LR+I L N EY + V M++R P TTA I+SSGKI CTGA
Sbjct: 17 LENIVSTVNLACELDLRKITLQAKNAEYNPKRFAAVIMRIRNPKTTALIFSSGKIVCTGA 76
Query: 105 TSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKH-RAAEYE 163
SE S+ AA +YA+ +++LGF +F F + N++ +C + F I + + + R + Y+
Sbjct: 77 KSETDSRTAAMKYAKTIKKLGFNVKFKEFTIQNMVASCGVEFGINLDELLLSYNRFSTYD 136
Query: 164 PELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
PE+ PG+ +R+ PK IFS+G I +T ++I
Sbjct: 137 PEIFPGLIFRMEDPKIVFLIFSSGKIILTGAKQRDQI 173
Score = 37.7 bits (86), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 32/60 (53%)
Query: 134 RVVNVLGTCSMPFAIRILQFSEKHRAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTA 193
R+ N++ T ++ + + + + + + AEY P+ V RI PK T IFS+G I T
Sbjct: 16 RLENIVSTVNLACELDLRKITLQAKNAEYNPKRFAAVIMRIRNPKTTALIFSSGKIVCTG 75
>gi|195117828|ref|XP_002003449.1| GI17918 [Drosophila mojavensis]
gi|193914024|gb|EDW12891.1| GI17918 [Drosophila mojavensis]
Length = 220
Score = 126 bits (317), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 64/176 (36%), Positives = 104/176 (59%), Gaps = 9/176 (5%)
Query: 33 PQPPA-----HDPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEY--RRENGMVTMKLR 85
PQ PA D + +I + N+V +FSV C L+L+ I N EY +R G++ M++
Sbjct: 29 PQQPAVLTEPKDAQHEIKLQNIVATFSVDCELDLKTINSRTRNSEYTPKRFRGVI-MRMH 87
Query: 86 KPYTTASIWSSGKITCTGATSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMP 145
P TA I+ +GK+ CTGA +E ++ I +R++AR LQ+LGF +F ++++ N++ T +
Sbjct: 88 SPRCTALIFRTGKVICTGARNETEANIGSRKFARILQKLGFPVKFVDYKLQNIVATVDLR 147
Query: 146 FAIRILQFSEKH-RAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
F IR+ ++ H + + YEPE+ PG+ YR+ +P+ L IF G I T I
Sbjct: 148 FPIRLENLNQVHGQFSSYEPEMFPGLIYRMVKPRIVLLIFVNGKIVFTGAKSRKDI 203
>gi|195434401|ref|XP_002065191.1| GK15318 [Drosophila willistoni]
gi|194161276|gb|EDW76177.1| GK15318 [Drosophila willistoni]
Length = 226
Score = 126 bits (317), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 67/184 (36%), Positives = 106/184 (57%), Gaps = 5/184 (2%)
Query: 20 PTQTVVPIQNHAPPQPPAHDPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEY--RREN 77
P T+ P Q P D + +I + N+V +FSV C L+L+ I N EY +R
Sbjct: 28 PHSTLQP-QQPMPALVEPKDAQHEIKLQNIVATFSVACELDLKSINSRTRNSEYSPKRFR 86
Query: 78 GMVTMKLRKPYTTASIWSSGKITCTGATSEDQSKIAARRYARCLQRLGFKARFTNFRVVN 137
G V M++ P TA I+ +GKI CTGA +E ++ I +R++AR LQ+LGF +FT++++ N
Sbjct: 87 G-VIMRMHSPRCTALIFRTGKIICTGARNEIEADIGSRKFARILQKLGFPVKFTDYKLQN 145
Query: 138 VLGTCSMPFAIRILQFSEKH-RAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTACND 196
++ T + F IR+ ++ H + + YEPE+ PG+ YR+ +P+ L IF G + T
Sbjct: 146 IVATVDLRFPIRLENLNQVHGQFSSYEPEMFPGLIYRMVKPRIVLLIFVNGKVVFTGAKS 205
Query: 197 SNKI 200
I
Sbjct: 206 RKDI 209
>gi|118352110|ref|XP_001009328.1| TATA-box binding protein [Tetrahymena thermophila]
gi|89291095|gb|EAR89083.1| TATA-box binding protein [Tetrahymena thermophila SB210]
Length = 246
Score = 126 bits (317), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 59/151 (39%), Positives = 94/151 (62%), Gaps = 2/151 (1%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGA 104
+ N+V + ++ L+L+QIAL N EY + V M+LR P TTA I++SGK+ CTGA
Sbjct: 53 LQNIVSTVNLSTKLDLKQIALRARNAEYNPKRFAAVIMRLRDPKTTALIFASGKMVCTGA 112
Query: 105 TSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKHRA-AEYE 163
+E+ S AAR+YA+ +Q++GF +F +F++ N++G+ + F I + + H+ +YE
Sbjct: 113 KTEEDSNRAARKYAKIIQKIGFPVQFKDFKIQNIVGSTDVKFPINLDHLEQDHKKFVQYE 172
Query: 164 PELHPGVTYRITRPKATLKIFSTGGITVTAC 194
PE+ PG+ YR K L IF +G I +T
Sbjct: 173 PEIFPGLIYREFNTKIVLLIFVSGKIVLTGA 203
Score = 38.9 bits (89), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 36/69 (52%), Gaps = 3/69 (4%)
Query: 134 RVVNVLGTCSMPFAIRILQFSEKHRAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTA 193
++ N++ T ++ + + Q + + R AEY P+ V R+ PK T IF++G + T
Sbjct: 52 KLQNIVSTVNLSTKLDLKQIALRARNAEYNPKRFAAVIMRLRDPKTTALIFASGKMVCTG 111
Query: 194 CN---DSNK 199
DSN+
Sbjct: 112 AKTEEDSNR 120
>gi|195388008|ref|XP_002052684.1| GJ17690 [Drosophila virilis]
gi|194149141|gb|EDW64839.1| GJ17690 [Drosophila virilis]
Length = 220
Score = 126 bits (316), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 65/176 (36%), Positives = 103/176 (58%), Gaps = 9/176 (5%)
Query: 33 PQPPA-----HDPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEY--RRENGMVTMKLR 85
PQ PA D + +I + N+V +FSV C L+L+ I N EY +R G V M++
Sbjct: 29 PQQPAVLTEPKDAQHEIKLQNIVATFSVDCELDLKTINSRTRNSEYTPKRFRG-VIMRMH 87
Query: 86 KPYTTASIWSSGKITCTGATSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMP 145
P TA I+ +GK+ CTGA +E ++ I +R++AR LQ+LGF +F ++++ N++ T +
Sbjct: 88 SPRCTALIFRTGKVICTGARNEMEANIGSRKFARILQKLGFPVKFVDYKLQNIVATVDLR 147
Query: 146 FAIRILQFSEKH-RAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
F IR+ ++ H + + YEPE+ PG+ YR+ +P+ L IF G I T I
Sbjct: 148 FPIRLENLNQVHGQFSSYEPEMFPGLIYRMVKPRIVLLIFVNGKIVFTGAKSRKDI 203
>gi|383860592|ref|XP_003705773.1| PREDICTED: TATA-box-binding protein-like [Megachile rotundata]
Length = 241
Score = 125 bits (315), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 72/196 (36%), Positives = 110/196 (56%), Gaps = 15/196 (7%)
Query: 19 PPTQTVVP----IQNHAP-----PQPPAHDPE--VDIIINNVVCSFSVRCHLNLRQIALN 67
PP T VP QN P P PAH + ++ + NVV + ++ L L QI
Sbjct: 30 PPQSTNVPRPSTSQNVNPQLMITPLTPAHSTKEVLEPCLQNVVSTVNLGTELKLMQINTR 89
Query: 68 GVNVEYR--RENGMVTMKLRKPYTTASIWSSGKITCTGATSEDQSKIAARRYARCLQRLG 125
N EY R G++ M++R P TA I+ SGK+ CTGA E+ S +A R++AR +Q+LG
Sbjct: 90 TRNSEYNPARFTGLI-MRIRNPRATALIFHSGKLVCTGARCEEDSYLATRKFARIIQKLG 148
Query: 126 FKARFTNFRVVNVLGTCSMPFAIRILQFSEKH-RAAEYEPELHPGVTYRITRPKATLKIF 184
F +F NF++ N++ TC + F I++ + H + + YEPEL+PG+ YR+ P+ L IF
Sbjct: 149 FPVKFYNFKIQNIVATCDLKFPIKLENLNHIHGQFSSYEPELYPGLIYRMVSPRVVLLIF 208
Query: 185 STGGITVTACNDSNKI 200
G I +T + ++
Sbjct: 209 VNGKIVLTGAKNRTEL 224
>gi|167386161|ref|XP_001737643.1| TATA-box-binding protein [Entamoeba dispar SAW760]
gi|165899478|gb|EDR26064.1| TATA-box-binding protein, putative [Entamoeba dispar SAW760]
Length = 216
Score = 125 bits (315), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 58/158 (36%), Positives = 95/158 (60%), Gaps = 2/158 (1%)
Query: 45 IINNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTG 103
+I N+V + + C +NL+ + N EY + G + +++ P TTA ++ SGK+ TG
Sbjct: 40 VIQNIVATVELDCTINLQDVVRRVRNAEYNPKRFGALIIRITNPKTTALVFHSGKLVVTG 99
Query: 104 ATSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKH-RAAEY 162
+ D S++A R+YAR LQRLG+ +F +F++ NV+ +C M FAI + + + + +Y
Sbjct: 100 GKTVDDSRLAGRKYARILQRLGYNVKFNHFKIQNVVASCDMKFAISLKELIQLAPKITKY 159
Query: 163 EPELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
EPE+ PGV YR+ PK L IF++G I T + +I
Sbjct: 160 EPEIFPGVVYRLADPKMVLLIFASGKIVFTGGKEIEQI 197
>gi|66498987|ref|XP_394229.2| PREDICTED: TATA-box-binding protein-like [Apis mellifera]
Length = 241
Score = 125 bits (315), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 71/201 (35%), Positives = 114/201 (56%), Gaps = 7/201 (3%)
Query: 5 GMTTTHSSHSEQEPPPTQTVVPIQNHAPPQPPAHDPE--VDIIINNVVCSFSVRCHLNLR 62
G+ S + P +Q V P Q+ P PA+ + ++ + NVV + ++ L L
Sbjct: 26 GLMGPPQSTNVPRPSTSQNVNP-QSLISPMTPANSTKEVIEPCLQNVVSTVNLGIELPLM 84
Query: 63 QIALNGVNVEYR--RENGMVTMKLRKPYTTASIWSSGKITCTGATSEDQSKIAARRYARC 120
I N EY R G++ M++R P TA I+ SGKI CTGA SE+ S +A R++AR
Sbjct: 85 YINTRTRNSEYNPARFMGLI-MRIRNPRATALIFHSGKIVCTGARSEEDSYLATRKFARI 143
Query: 121 LQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKH-RAAEYEPELHPGVTYRITRPKA 179
+Q+LGF A+F NF++ N++ TC + F I++ + H + + YEPEL+PG+ YR+ P+
Sbjct: 144 IQKLGFAAKFYNFKIQNIVATCDLKFPIKLENLNHIHGQFSSYEPELYPGLIYRMVSPRV 203
Query: 180 TLKIFSTGGITVTACNDSNKI 200
L IF G + +T + ++
Sbjct: 204 VLLIFVNGKVVLTGAKNRTEL 224
>gi|380013265|ref|XP_003690685.1| PREDICTED: TATA-box-binding protein-like [Apis florea]
Length = 241
Score = 125 bits (315), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 71/201 (35%), Positives = 114/201 (56%), Gaps = 7/201 (3%)
Query: 5 GMTTTHSSHSEQEPPPTQTVVPIQNHAPPQPPAHDPE--VDIIINNVVCSFSVRCHLNLR 62
G+ S + P +Q V P Q+ P PA+ + ++ + NVV + ++ L L
Sbjct: 26 GLMGPPQSTNVPRPSTSQNVNP-QSLISPMTPANSTKEVIEPCLQNVVSTVNLGIELPLM 84
Query: 63 QIALNGVNVEYR--RENGMVTMKLRKPYTTASIWSSGKITCTGATSEDQSKIAARRYARC 120
I N EY R G++ M++R P TA I+ SGKI CTGA SE+ S +A R++AR
Sbjct: 85 YINTRTRNSEYNPARFMGLI-MRIRNPRATALIFHSGKIVCTGARSEEDSYLATRKFARI 143
Query: 121 LQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKH-RAAEYEPELHPGVTYRITRPKA 179
+Q+LGF A+F NF++ N++ TC + F I++ + H + + YEPEL+PG+ YR+ P+
Sbjct: 144 IQKLGFAAKFYNFKIQNIVATCDLKFPIKLENLNHIHGQFSSYEPELYPGLIYRMVSPRV 203
Query: 180 TLKIFSTGGITVTACNDSNKI 200
L IF G + +T + ++
Sbjct: 204 VLLIFVNGKVVLTGAKNRTEL 224
>gi|67479107|ref|XP_654935.1| TATA binding protein [Entamoeba histolytica HM-1:IMSS]
gi|296439771|sp|A7UFC2.1|TBPL1_ENTHI RecName: Full=TATA-box-binding protein-like protein 1; Short=EhTRF1
gi|56472030|gb|EAL49549.1| TATA binding protein, putative [Entamoeba histolytica HM-1:IMSS]
gi|155007635|gb|ABS89251.1| TBP-related factor [Entamoeba histolytica]
gi|407041324|gb|EKE40663.1| transcription initiation factor TFIID family protein [Entamoeba
nuttalli P19]
gi|449703269|gb|EMD43751.1| TBPrelated factor, putative [Entamoeba histolytica KU27]
Length = 216
Score = 125 bits (315), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 58/158 (36%), Positives = 95/158 (60%), Gaps = 2/158 (1%)
Query: 45 IINNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTG 103
+I N+V + + C +NL+ + N EY + G + +++ P TTA ++ SGK+ TG
Sbjct: 40 VIQNIVATVELDCTINLQDVVRRVRNAEYNPKRFGALIIRITNPKTTALVFHSGKLVVTG 99
Query: 104 ATSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKH-RAAEY 162
+ D S++A R+YAR LQRLG+ +F +F++ NV+ +C M FAI + + + + +Y
Sbjct: 100 GKTVDDSRLAGRKYARILQRLGYNVKFNHFKIQNVVASCDMKFAISLKELIQLAPKITKY 159
Query: 163 EPELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
EPE+ PGV YR+ PK L IF++G I T + +I
Sbjct: 160 EPEIFPGVVYRLADPKMVLLIFASGKIVFTGGKEIEQI 197
>gi|189236649|ref|XP_969256.2| PREDICTED: similar to TATA-box-binding protein [Tribolium
castaneum]
Length = 236
Score = 125 bits (315), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 66/166 (39%), Positives = 97/166 (58%), Gaps = 4/166 (2%)
Query: 31 APPQPPAHDPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYR--RENGMVTMKLRKPY 88
A P A +P +I I N V + + L+L I N EY R +G++ M+LR P
Sbjct: 48 ATPGSAAGEPHTNITIQNCVTTVDLNTKLDLALINARTRNSEYNPARFHGLI-MRLRDPR 106
Query: 89 TTASIWSSGKITCTGATSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAI 148
TTA I+ +GKI CTGA SE + +A++++AR +Q+LGF +F NF++ N++ TC + F I
Sbjct: 107 TTALIFQTGKIVCTGAKSEQDALLASKKFARIIQKLGFDIKFDNFKIQNLVATCDLRFPI 166
Query: 149 RILQFSEKH-RAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTA 193
++ S H + YEPEL PG+ YR+ +P L IF G I T
Sbjct: 167 KLESLSLLHGQFCSYEPELFPGIIYRMIKPHLCLLIFVNGKIVFTG 212
>gi|270005208|gb|EFA01656.1| hypothetical protein TcasGA2_TC007228 [Tribolium castaneum]
Length = 238
Score = 125 bits (315), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 66/166 (39%), Positives = 97/166 (58%), Gaps = 4/166 (2%)
Query: 31 APPQPPAHDPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYR--RENGMVTMKLRKPY 88
A P A +P +I I N V + + L+L I N EY R +G++ M+LR P
Sbjct: 50 ATPGSAAGEPHTNITIQNCVTTVDLNTKLDLALINARTRNSEYNPARFHGLI-MRLRDPR 108
Query: 89 TTASIWSSGKITCTGATSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAI 148
TTA I+ +GKI CTGA SE + +A++++AR +Q+LGF +F NF++ N++ TC + F I
Sbjct: 109 TTALIFQTGKIVCTGAKSEQDALLASKKFARIIQKLGFDIKFDNFKIQNLVATCDLRFPI 168
Query: 149 RILQFSEKH-RAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTA 193
++ S H + YEPEL PG+ YR+ +P L IF G I T
Sbjct: 169 KLESLSLLHGQFCSYEPELFPGIIYRMIKPHLCLLIFVNGKIVFTG 214
>gi|167518271|ref|XP_001743476.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163778575|gb|EDQ92190.1| predicted protein [Monosiga brevicollis MX1]
Length = 181
Score = 125 bits (315), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 63/156 (40%), Positives = 98/156 (62%), Gaps = 3/156 (1%)
Query: 48 NVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGATS 106
N+V + + C L+L+ IA N N EY + V M++R+P+TTA I+SSGK+ CTGA S
Sbjct: 9 NLVATVTFNCKLDLKHIANNARNAEYSPKRFSAVIMRIREPHTTALIFSSGKMICTGAKS 68
Query: 107 EDQSKIAARRYARCLQRLGF-KARFTNFRVVNVLGTCSMPFAIRILQFSEKHRA-AEYEP 164
ED + A R+YA+ +++LG+ + R NF++ N++G+C + F IR+ + H+ YEP
Sbjct: 69 EDDAWRATRKYAQIIKKLGYGELRHENFQIQNMVGSCDVRFPIRLEGLAANHQCFCTYEP 128
Query: 165 ELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
E+ PG+ YR+ +PK L IF +G + VT I
Sbjct: 129 EIFPGLVYRMVKPKVVLLIFVSGKVVVTGAKSRQTI 164
>gi|449016069|dbj|BAM79471.1| TATA-box binding protein [Cyanidioschyzon merolae strain 10D]
Length = 260
Score = 125 bits (314), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 60/163 (36%), Positives = 100/163 (61%), Gaps = 3/163 (1%)
Query: 41 EVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYRREN-GMVTMKLRKPYTTASIWSSGKI 99
+V++ + NVV S ++ C L+LR IA+ N EY + V M++R P TTA I+SSGK+
Sbjct: 40 DVEVRLQNVVASVNLLCPLDLRHIAMRARNAEYNPQRFAAVIMRIRDPRTTALIFSSGKV 99
Query: 100 TCTGATSEDQSKIAARRYARCLQRLGF-KARFTNFRVVNVLGTCSMPFAIRILQFSEKH- 157
TGA SE+ +++AAR+YA+ +++LG+ + +F + N++ + + F IR+ + H
Sbjct: 100 VITGARSEEDARLAARKYAKIVRKLGYADVKLADFELHNLVASADVRFPIRLEALAHAHS 159
Query: 158 RAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
A YEPEL PG+ YR+ P+ L IF +G + +T + +
Sbjct: 160 NYAHYEPELFPGLVYRMLEPRLALLIFVSGKVVITGAKSRDDL 202
>gi|399949933|gb|AFP65589.1| TATA binding protein of transcription factor IID [Chroomonas
mesostigmatica CCMP1168]
Length = 262
Score = 125 bits (314), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 62/158 (39%), Positives = 96/158 (60%), Gaps = 3/158 (1%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGA 104
I NVV + ++ L+L++IAL N EY R V M++R P TTA I+SSGK+ TGA
Sbjct: 88 IQNVVSTVNLGIQLDLKRIALKTRNAEYNPRRFAAVVMRIRDPKTTALIFSSGKMVITGA 147
Query: 105 TSEDQSKIAARRYARCLQRLGF-KARFTNFRVVNVLGTCSMPFAIRILQFSEKH-RAAEY 162
SE+ +K+ ++YAR +Q++G+ +F +F++ N++ +C F IR+ + H + Y
Sbjct: 148 KSEETAKLGGKKYARIIQKIGYGHIKFLDFKIQNIVASCDTKFPIRLESLAHAHNQFCSY 207
Query: 163 EPELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
EPEL PG+ YR+ PK L IF +G + +T N I
Sbjct: 208 EPELFPGLIYRMISPKVVLLIFVSGKLVLTGAKQRNDI 245
>gi|222433591|gb|ACM51140.1| TATA box binding protein [Tetranychus cinnabarinus]
Length = 122
Score = 125 bits (314), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 55/115 (47%), Positives = 84/115 (73%), Gaps = 1/115 (0%)
Query: 80 VTMKLRKPYTTASIWSSGKITCTGATSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVL 139
V M++R+P TTA I+SSGK+ CTGA SE+QS++AAR+YAR +Q+LGF A+F +F++ N++
Sbjct: 7 VIMRIREPRTTALIFSSGKMVCTGAKSEEQSRLAARKYARIVQKLGFDAKFLDFKIQNMV 66
Query: 140 GTCSMPFAIRILQFSEKH-RAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTA 193
G+C + F IR+ H + + YEPEL PG+ YR+ +P+ L IF +G + +T
Sbjct: 67 GSCDVKFPIRLEGLVLTHSQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLTG 121
>gi|3122945|sp|Q27850.1|TBP_TETTH RecName: Full=TATA-box-binding protein; AltName: Full=TATA
sequence-binding protein; Short=TBP; AltName:
Full=TATA-binding factor; AltName: Full=TATA-box factor;
AltName: Full=Transcription initiation factor TFIID TBP
subunit
gi|349811|gb|AAC14470.1| TATA-binding protein [Tetrahymena thermophila]
Length = 246
Score = 125 bits (313), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 59/151 (39%), Positives = 93/151 (61%), Gaps = 2/151 (1%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGA 104
+ N+V + ++ L+L+QIAL N EY + V M+LR P TTA I++SGK+ CTGA
Sbjct: 53 LQNIVSTVNLSTKLDLKQIALRARNAEYNPKRFAAVIMRLRDPKTTALIFASGKMVCTGA 112
Query: 105 TSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKHRA-AEYE 163
+E+ S AAR+YA+ +Q++GF +F +F++ N++G+ + F I + + H+ +YE
Sbjct: 113 KTEEDSNRAARKYAKIIQKIGFPVQFKDFKIQNIVGSTDVKFPINLDHLEQDHKKFVQYE 172
Query: 164 PELHPGVTYRITRPKATLKIFSTGGITVTAC 194
PE+ PG YR K L IF +G I +T
Sbjct: 173 PEIFPGKIYREFNTKIVLLIFVSGKIVLTGA 203
Score = 38.9 bits (89), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 36/69 (52%), Gaps = 3/69 (4%)
Query: 134 RVVNVLGTCSMPFAIRILQFSEKHRAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTA 193
++ N++ T ++ + + Q + + R AEY P+ V R+ PK T IF++G + T
Sbjct: 52 KLQNIVSTVNLSTKLDLKQIALRARNAEYNPKRFAAVIMRLRDPKTTALIFASGKMVCTG 111
Query: 194 CN---DSNK 199
DSN+
Sbjct: 112 AKTEEDSNR 120
>gi|407813853|gb|AFU35092.1| TATA box binding protein, partial [Tetranychus urticae]
Length = 122
Score = 125 bits (313), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 55/116 (47%), Positives = 84/116 (72%), Gaps = 1/116 (0%)
Query: 80 VTMKLRKPYTTASIWSSGKITCTGATSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVL 139
V M++R+P TTA I+SSGK+ CTGA SE+QS++AAR+YAR +Q+LGF A+F +F++ N++
Sbjct: 7 VIMRIREPRTTALIFSSGKMVCTGAKSEEQSRLAARKYARIVQKLGFDAKFLDFKIQNMV 66
Query: 140 GTCSMPFAIRILQFSEKH-RAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTAC 194
G+C + F IR+ H + + YEPEL PG+ YR+ +P+ L IF +G + +T
Sbjct: 67 GSCDVKFPIRLEGLVLTHSQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLTGA 122
>gi|125984322|ref|XP_001355925.1| GA20441 [Drosophila pseudoobscura pseudoobscura]
gi|195172938|ref|XP_002027252.1| GL24756 [Drosophila persimilis]
gi|54644243|gb|EAL32984.1| GA20441 [Drosophila pseudoobscura pseudoobscura]
gi|194113089|gb|EDW35132.1| GL24756 [Drosophila persimilis]
Length = 220
Score = 125 bits (313), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 65/176 (36%), Positives = 101/176 (57%), Gaps = 9/176 (5%)
Query: 33 PQPPA-----HDPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEY--RRENGMVTMKLR 85
PQ PA D + +I + N+V +FSV C L+L+ I N EY +R G V M++
Sbjct: 29 PQQPAVLVEPKDAQHEIKLQNIVATFSVNCELDLKTINSRTRNSEYSPKRFRG-VIMRMH 87
Query: 86 KPYTTASIWSSGKITCTGATSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMP 145
P TA I+ +GKI CTGA +E + I +R++AR LQ+LGF +F +++ N++ T +
Sbjct: 88 SPRCTALIFRTGKIICTGARNERDADIGSRKFARILQKLGFPVKFMEYKLQNIVATVDLR 147
Query: 146 FAIRILQFSEKH-RAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
F IR+ ++ H + + YEPE+ PG+ YR+ +P+ L IF G + T I
Sbjct: 148 FPIRLENLNQVHGQFSSYEPEMFPGLIYRMVKPRIVLLIFVNGKVVFTGAKSRKDI 203
>gi|403354886|gb|EJY77003.1| Tata box binding protein [Oxytricha trifallax]
Length = 502
Score = 125 bits (313), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 65/179 (36%), Positives = 103/179 (57%), Gaps = 6/179 (3%)
Query: 28 QNHAPPQPPAHDPEV----DIIINNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTM 82
QN +P + PE D + N+V + + C L+LRQIALN N EY + M
Sbjct: 279 QNSVLIKPEQNLPESLLNGDPTLQNIVATCNFGCKLDLRQIALNARNCEYNPKRFAAAIM 338
Query: 83 KLRKPYTTASIWSSGKITCTGATSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTC 142
++R+P TTA I+ SGK+ CTGA E++S+ A ++YA+ ++++GF + F++ NV+ +
Sbjct: 339 RIREPKTTALIFQSGKMVCTGAKDEEKSRTACKQYAKAVRKIGFNVQMKEFKIQNVVASH 398
Query: 143 SMPFAIRILQFSEKH-RAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
F I + S +H + + YEPEL PG+ YR+ PK + IF++G I T +I
Sbjct: 399 DCGFPISLEGLSNEHDKFSTYEPELFPGLIYRMASPKLVMLIFASGKIVFTGAKTREQI 457
>gi|195472903|ref|XP_002088737.1| GE18732 [Drosophila yakuba]
gi|194174838|gb|EDW88449.1| GE18732 [Drosophila yakuba]
Length = 224
Score = 124 bits (312), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 65/176 (36%), Positives = 102/176 (57%), Gaps = 8/176 (4%)
Query: 32 PPQPPA----HDPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEY--RRENGMVTMKLR 85
P QP A D + +I + N+V +FSV C L+L+ I N EY +R G V M++
Sbjct: 33 PQQPVALVEPKDAQHEIRLQNIVATFSVNCELDLKAINSRTRNSEYSPKRFRG-VIMRMH 91
Query: 86 KPYTTASIWSSGKITCTGATSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMP 145
P TA I+ +GKI CTGA +E ++ I +R++AR LQ+LGF +F +++ N++ T +
Sbjct: 92 SPRCTALIFRTGKIICTGARNEIEADIGSRKFARILQKLGFPVKFMEYKLQNIVATVDLR 151
Query: 146 FAIRILQFSEKH-RAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
F IR+ ++ H + + YEPE+ PG+ YR+ +P+ L IF G + T I
Sbjct: 152 FPIRLENLNQVHGQFSSYEPEMFPGLIYRMVKPRIVLLIFVNGKVVFTGAKSRKDI 207
>gi|308499591|ref|XP_003111981.1| CRE-TLF-1 protein [Caenorhabditis remanei]
gi|308268462|gb|EFP12415.1| CRE-TLF-1 protein [Caenorhabditis remanei]
Length = 532
Score = 124 bits (311), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 74/205 (36%), Positives = 113/205 (55%), Gaps = 26/205 (12%)
Query: 16 QEPPPTQTVVPIQNHAPPQPPAHDPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYRR 75
+ PPP+ ++ P P D ++DI I NVVC++++ H++LR++A+N NV Y R
Sbjct: 254 ENPPPSSSM----KQEEPMP--DDSDIDIQIRNVVCNYTLPLHIDLRKLAMNTHNVTYER 307
Query: 76 ENGMVTMKLRKPYTTASIWSSGKITCTGATSEDQSKIAARRYARCLQRLGFKAR----FT 131
E G++ + R P ++SSGK+ G SE+ K AAR AR +QR+ K +
Sbjct: 308 EKGVMMKQKRSPGCYIKVYSSGKVYIVGCRSEEDCKRAARSIARHVQRVMGKTKEKVQIR 367
Query: 132 NFRVV---------------NVLGTCSMPFAIRILQFSEKHRA-AEYEPELHPGVTYRIT 175
N+RV NVL TC +PF I+I + + K+ + + YEPEL G+ +R
Sbjct: 368 NYRVSRSKSHLNMKFMFQVNNVLATCRLPFGIKIEEVAAKYPSESTYEPELSVGLVWRSI 427
Query: 176 RPKATLKIFSTGGITVTACNDSNKI 200
PKATL+I +TG ITVT + +
Sbjct: 428 TPKATLRIHTTGSITVTGASSEADV 452
>gi|194759081|ref|XP_001961778.1| GF14757 [Drosophila ananassae]
gi|190615475|gb|EDV30999.1| GF14757 [Drosophila ananassae]
Length = 224
Score = 124 bits (311), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 65/176 (36%), Positives = 101/176 (57%), Gaps = 9/176 (5%)
Query: 33 PQPPA-----HDPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEY--RRENGMVTMKLR 85
PQ PA D + +I + N+V +FSV C L+L+ I N EY +R G V M++
Sbjct: 33 PQQPAALVEPKDAQHEIRLQNIVATFSVNCELDLKAINSRTRNSEYSPKRFRG-VIMRMH 91
Query: 86 KPYTTASIWSSGKITCTGATSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMP 145
P TA I+ +GKI CTGA +E + I +R++AR LQ+LGF +F +++ N++ T +
Sbjct: 92 SPRCTALIFRTGKIICTGARNEIDADIGSRKFARILQKLGFPVKFMEYKLQNIVATVDLR 151
Query: 146 FAIRILQFSEKH-RAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
F IR+ ++ H + + YEPE+ PG+ YR+ +P+ L IF G + T I
Sbjct: 152 FPIRLENLNQVHGQFSSYEPEMFPGLIYRMVKPRIVLLIFVNGKVVFTGAKSRKDI 207
>gi|195339082|ref|XP_002036150.1| GM16720 [Drosophila sechellia]
gi|194130030|gb|EDW52073.1| GM16720 [Drosophila sechellia]
Length = 224
Score = 124 bits (310), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 64/176 (36%), Positives = 102/176 (57%), Gaps = 8/176 (4%)
Query: 32 PPQPPA----HDPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEY--RRENGMVTMKLR 85
P QP A D + +I + N+V +FSV C L+L+ I N EY +R G V M++
Sbjct: 33 PQQPVALVEPKDAQHEIRLQNIVATFSVNCELDLKAINSRTRNSEYSPKRFRG-VIMRMH 91
Query: 86 KPYTTASIWSSGKITCTGATSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMP 145
P TA I+ +GK+ CTGA +E ++ I +R++AR LQ+LGF +F +++ N++ T +
Sbjct: 92 SPRCTALIFRTGKVICTGARNEIEADIGSRKFARILQKLGFPVKFMEYKLQNIVATVDLR 151
Query: 146 FAIRILQFSEKH-RAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
F IR+ ++ H + + YEPE+ PG+ YR+ +P+ L IF G + T I
Sbjct: 152 FPIRLENLNQVHGQFSSYEPEMFPGLIYRMVKPRIVLLIFVNGKVVFTGAKSRKDI 207
>gi|195577454|ref|XP_002078585.1| GD23502 [Drosophila simulans]
gi|194190594|gb|EDX04170.1| GD23502 [Drosophila simulans]
Length = 224
Score = 124 bits (310), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 64/176 (36%), Positives = 102/176 (57%), Gaps = 8/176 (4%)
Query: 32 PPQPPA----HDPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEY--RRENGMVTMKLR 85
P QP A D + +I + N+V +FSV C L+L+ I N EY +R G V M++
Sbjct: 33 PQQPVALVEPKDAQHEIRLQNIVATFSVNCELDLKAINSRTRNSEYSPKRFRG-VIMRMH 91
Query: 86 KPYTTASIWSSGKITCTGATSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMP 145
P TA I+ +GK+ CTGA +E ++ I +R++AR LQ+LGF +F +++ N++ T +
Sbjct: 92 SPRCTALIFRTGKVICTGARNEIEADIGSRKFARILQKLGFPVKFMEYKLQNIVATVDLR 151
Query: 146 FAIRILQFSEKH-RAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
F IR+ ++ H + + YEPE+ PG+ YR+ +P+ L IF G + T I
Sbjct: 152 FPIRLENLNQVHGQFSSYEPEMFPGLIYRMVKPRIVLLIFVNGKVVFTGAKSRKDI 207
>gi|320164625|gb|EFW41524.1| Tbpl2 protein [Capsaspora owczarzaki ATCC 30864]
Length = 208
Score = 123 bits (309), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 63/179 (35%), Positives = 105/179 (58%), Gaps = 12/179 (6%)
Query: 34 QPPAHDPE---------VDIIINNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMK 83
QPP+ + V ++ NVV + ++ L+L+ I + N EY + V M+
Sbjct: 6 QPPSQNENYEDYLRTSVVQPVLQNVVSTANLGVTLDLKTITMQARNAEYNPKRFAAVIMR 65
Query: 84 LRKPYTTASIWSSGKITCTGATSEDQSKIAARRYARCLQRLGFK-ARFTNFRVVNVLGTC 142
+R+P TTA I++SGK+ CTGA SE S+ AAR++A+ +Q++G+K A+F +F++ N++ +C
Sbjct: 66 IREPKTTALIFASGKMVCTGAKSEHDSREAARKFAKIIQKVGYKNAKFLDFKIQNMVASC 125
Query: 143 SMPFAIRILQFSEKHRA-AEYEPELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
+ F IR+ H A YEPE+ PG+ Y + PK L IF +G + +T + +I
Sbjct: 126 DVKFPIRLEGLVLGHSTFASYEPEIFPGLVYHMVSPKVVLLIFVSGKVVLTGAKEKEQI 184
>gi|47217167|emb|CAG11003.1| unnamed protein product [Tetraodon nigroviridis]
Length = 283
Score = 123 bits (309), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 55/117 (47%), Positives = 84/117 (71%), Gaps = 1/117 (0%)
Query: 80 VTMKLRKPYTTASIWSSGKITCTGATSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVL 139
V M++R+P TTA I+SSGK+ CTGA SE+QS++AAR+YAR +Q+LGF A+F +F++ N++
Sbjct: 144 VIMRIREPRTTALIFSSGKMVCTGAKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMV 203
Query: 140 GTCSMPFAIRILQFSEKHRA-AEYEPELHPGVTYRITRPKATLKIFSTGGITVTACN 195
G+C + F IR+ H+ + YEPEL PG+ YR+ +P+ L IF +G + +T
Sbjct: 204 GSCDVRFPIRLEGLVLTHQQFSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLTGAK 260
>gi|194863019|ref|XP_001970236.1| GG10512 [Drosophila erecta]
gi|190662103|gb|EDV59295.1| GG10512 [Drosophila erecta]
Length = 224
Score = 123 bits (309), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 65/176 (36%), Positives = 101/176 (57%), Gaps = 8/176 (4%)
Query: 32 PPQPPA----HDPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEY--RRENGMVTMKLR 85
P QP A D + +I + N+V +FSV C L+L+ I N EY +R G V M++
Sbjct: 33 PQQPVALVEPKDAQHEIRLQNIVATFSVNCELDLKAINSRTRNSEYSPKRFRG-VIMRMH 91
Query: 86 KPYTTASIWSSGKITCTGATSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMP 145
P TA I+ +GKI CTGA +E ++ I +R++AR LQ+LGF +F +++ N++ T +
Sbjct: 92 SPRCTALIFRTGKIICTGARNEIEADIGSRKFARILQKLGFPVKFMEYKLQNIVATVDLR 151
Query: 146 FAIRILQFSEKH-RAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
F IR+ + H + + YEPE+ PG+ YR+ +P+ L IF G + T I
Sbjct: 152 FPIRLENLNHVHGQFSSYEPEMFPGLIYRMVKPRIVLLIFVNGKVVFTGAKSRKDI 207
>gi|170031575|ref|XP_001843660.1| TATA-box-binding protein [Culex quinquefasciatus]
gi|167870488|gb|EDS33871.1| TATA-box-binding protein [Culex quinquefasciatus]
Length = 236
Score = 123 bits (308), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 67/188 (35%), Positives = 108/188 (57%), Gaps = 7/188 (3%)
Query: 16 QEPPPTQTVVPIQNHAPPQPPAHDPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYR- 74
Q PP ++V +Q P P + +++ N V + S+ C LNL+ I N EY
Sbjct: 36 QNVPPQSSMV-MQAPMPTGP--QEAINSVLVRNCVATVSLGCELNLQSINFRTRNSEYNP 92
Query: 75 -RENGMVTMKLRKPYTTASIWSSGKITCTGATSEDQSKIAARRYARCLQRLGFKARFTNF 133
R +G+V M++R P TA ++ SGKI CTGA +E + +AAR++AR +Q++G+ +F F
Sbjct: 93 SRFHGVV-MRIRDPRCTALVFRSGKIVCTGAKNEHDANLAARKFARIIQKVGYNVKFLEF 151
Query: 134 RVVNVLGTCSMPFAIRILQFSEKH-RAAEYEPELHPGVTYRITRPKATLKIFSTGGITVT 192
+V N++ T + F +R+ ++ H + + YEPEL PG+ YR+ +P+ L IF G I T
Sbjct: 152 KVQNLVATVDLRFPVRLENLNQVHGQFSSYEPELFPGLIYRMVKPRVVLLIFVNGKIVFT 211
Query: 193 ACNDSNKI 200
+I
Sbjct: 212 GAKSEWEI 219
>gi|17136834|ref|NP_476939.1| TBP-related factor [Drosophila melanogaster]
gi|25091428|sp|Q27896.1|TRF_DROME RecName: Full=TBP-related factor
gi|11136|emb|CAA50185.1| TBP-related factor [Drosophila melanogaster]
gi|11138|emb|CAA50186.1| TBP-related factor [Drosophila melanogaster]
gi|7297339|gb|AAF52600.1| TBP-related factor [Drosophila melanogaster]
gi|21711771|gb|AAM75076.1| RE61442p [Drosophila melanogaster]
gi|220942420|gb|ACL83753.1| Trf-PA [synthetic construct]
gi|220955718|gb|ACL90402.1| Trf-PA [synthetic construct]
gi|445085|prf||1908393A TATA-binding protein-related factor
Length = 224
Score = 123 bits (308), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 64/176 (36%), Positives = 101/176 (57%), Gaps = 8/176 (4%)
Query: 32 PPQPPA----HDPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEY--RRENGMVTMKLR 85
P QP A D + +I + N+V +FSV C L+L+ I N EY +R G V M++
Sbjct: 33 PQQPVALVEPKDAQHEIRLQNIVATFSVNCELDLKAINSRTRNSEYSPKRFRG-VIMRMH 91
Query: 86 KPYTTASIWSSGKITCTGATSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMP 145
P TA I+ +GK+ CTGA +E ++ I +R++AR LQ+LGF +F +++ N++ T +
Sbjct: 92 SPRCTALIFRTGKVICTGARNEIEADIGSRKFARILQKLGFPVKFMEYKLQNIVATVDLR 151
Query: 146 FAIRILQFSEKH-RAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
F IR+ + H + + YEPE+ PG+ YR+ +P+ L IF G + T I
Sbjct: 152 FPIRLENLNHVHGQFSSYEPEMFPGLIYRMVKPRIVLLIFVNGKVVFTGAKSRKDI 207
>gi|395330269|gb|EJF62653.1| TBP-domain-containing protein [Dichomitus squalens LYAD-421 SS1]
Length = 137
Score = 122 bits (307), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 54/120 (45%), Positives = 83/120 (69%), Gaps = 1/120 (0%)
Query: 82 MKLRKPYTTASIWSSGKITCTGATSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGT 141
M++R P TTA I++SGK+ TGA SED S++A+R+YAR +Q+LGF A+F+ F++ N++G+
Sbjct: 1 MRIRDPKTTALIFASGKMVVTGAKSEDDSRLASRKYARIVQKLGFDAKFSEFKIQNIVGS 60
Query: 142 CSMPFAIRILQFSEKH-RAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
C + F IR+ + H + + YEPEL PG+ YR+ +PK L IF +G I +T +I
Sbjct: 61 CDVKFPIRLEGLAYSHGQFSSYEPELFPGLIYRMIKPKVVLLIFVSGKIVLTGAKVREEI 120
>gi|350425498|ref|XP_003494140.1| PREDICTED: TATA-box-binding protein-like [Bombus impatiens]
Length = 241
Score = 121 bits (303), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 73/199 (36%), Positives = 111/199 (55%), Gaps = 17/199 (8%)
Query: 19 PPTQTVVP----IQNHAP-----PQPPAHDPE--VDIIINNVVCSFSVRCHLNLRQIALN 67
PP T VP QN P P PA+ + ++ + NVV + ++ L L I
Sbjct: 30 PPQTTNVPRPSTSQNLNPQSLINPMTPANSTKEVIEPCLQNVVSTVNLGIELPLMYINTR 89
Query: 68 GVNVEYR--RENGMVTMKLRKPYTTASIWSSGKITCTGATSEDQSKIAARRYARCLQRLG 125
N EY R G+V M++R P TA I+ SGK+ CTGA E+ S +A R++AR +Q+LG
Sbjct: 90 TRNSEYNPARFTGLV-MRIRNPRATALIFHSGKLVCTGARCEEDSFLATRKFARIIQKLG 148
Query: 126 FKARFTNFRVVNVLGTCSMPFAIRILQFSEKH-RAAEYEPELHPGVTYRITRPKATLKIF 184
F +F NF++ N++ TC + F I++ + H + + YEPEL+PG+ YR+ P+ L IF
Sbjct: 149 FTVKFYNFKIQNIVATCDLKFPIKLENLNHIHGQFSSYEPELYPGLIYRMVSPRVVLLIF 208
Query: 185 STGGITVTACNDSNKIPVQ 203
G I +T N++ +Q
Sbjct: 209 VNGKIVLTGA--KNRVELQ 225
>gi|118789378|ref|XP_317373.3| AGAP008084-PA [Anopheles gambiae str. PEST]
gi|116123189|gb|EAA12691.4| AGAP008084-PA [Anopheles gambiae str. PEST]
Length = 200
Score = 121 bits (303), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 58/147 (39%), Positives = 92/147 (62%), Gaps = 4/147 (2%)
Query: 44 IIINNVVCSFSVRCHLNLRQIALNGVNVEYR--RENGMVTMKLRKPYTTASIWSSGKITC 101
+++ N V + SV C LNL+ I N EY R +G+V M++R P TA ++ SGK+ C
Sbjct: 54 VLVRNCVATVSVGCELNLKTINFRTRNSEYNPSRFHGVV-MRIRDPRCTALVFRSGKVIC 112
Query: 102 TGATSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKH-RAA 160
TGA +E Q+ + R++ R +Q+LGF +F +F+V N++ T + F IR+ ++ H + +
Sbjct: 113 TGAKNEQQAHLGLRKFVRIIQKLGFDVKFLDFKVQNLVATADLRFPIRLENLNQVHGQFS 172
Query: 161 EYEPELHPGVTYRITRPKATLKIFSTG 187
YEPEL PG+ YR+ +P+ L IF G
Sbjct: 173 SYEPELFPGLIYRMVKPRVVLLIFVNG 199
>gi|332018160|gb|EGI58766.1| TATA-box-binding protein [Acromyrmex echinatior]
Length = 240
Score = 121 bits (303), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 58/158 (36%), Positives = 99/158 (62%), Gaps = 4/158 (2%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYR--RENGMVTMKLRKPYTTASIWSSGKITCTG 103
+ NVV + +++ L L I + N EY R G++ M+++ P TA I+ SGK+ CTG
Sbjct: 67 LQNVVSTVNLQTELKLMYINVRTRNSEYNPARFTGLI-MRIQNPRATALIFRSGKLVCTG 125
Query: 104 ATSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKH-RAAEY 162
A SE S +AA+++AR +Q+LGF +F++F++ N++ TC + F I++ + H + + Y
Sbjct: 126 ARSEQDSFLAAKKFARIIQKLGFPVKFSSFKIQNIVATCDLKFPIKLEILYQCHGQFSSY 185
Query: 163 EPELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
EPEL+PG+TYR+ P+ L IF G + +T + ++
Sbjct: 186 EPELYPGLTYRMYSPRVVLLIFVNGKVVLTGAKNRTEL 223
>gi|340728982|ref|XP_003402790.1| PREDICTED: TATA-box-binding protein-like [Bombus terrestris]
Length = 241
Score = 120 bits (302), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 71/192 (36%), Positives = 107/192 (55%), Gaps = 15/192 (7%)
Query: 19 PPTQTVVP----IQNHAP-----PQPPAHDPE--VDIIINNVVCSFSVRCHLNLRQIALN 67
PP T VP QN P P PA+ + ++ + NVV + ++ L L I
Sbjct: 30 PPQTTNVPRPSTSQNLNPQSLINPMTPANSTKEVIEPCLQNVVSTVNLGIQLPLMYINTR 89
Query: 68 GVNVEYR--RENGMVTMKLRKPYTTASIWSSGKITCTGATSEDQSKIAARRYARCLQRLG 125
N EY R G+V M++R P TA I+ SGK+ CTGA E+ S +A R++AR +Q+LG
Sbjct: 90 TRNSEYNPARFTGLV-MRIRNPRATALIFHSGKLVCTGARCEEDSFLATRKFARIIQKLG 148
Query: 126 FKARFTNFRVVNVLGTCSMPFAIRILQFSEKH-RAAEYEPELHPGVTYRITRPKATLKIF 184
F +F NF++ N++ TC + F I++ + H + + YEPEL+PG+ YR+ P+ L IF
Sbjct: 149 FTVKFYNFKIQNIVATCDLKFPIKLENLNHIHGQFSSYEPELYPGLIYRMVSPRVVLLIF 208
Query: 185 STGGITVTACND 196
G I +T +
Sbjct: 209 VNGKIVLTGAKN 220
>gi|323447675|gb|EGB03588.1| hypothetical protein AURANDRAFT_33824 [Aureococcus anophagefferens]
Length = 274
Score = 120 bits (300), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 59/160 (36%), Positives = 98/160 (61%), Gaps = 2/160 (1%)
Query: 35 PPAHDPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASI 93
P +H I + NVV + ++R ++LR +ALN N EY ++ V M++R+P TA +
Sbjct: 39 PWSHPSGATIDVQNVVATVNLRISIDLRTLALNARNAEYNPKKFAAVIMRVREPRCTALV 98
Query: 94 WSSGKITCTGATSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQF 153
+S+GK+ TGA SED ++ AR++A ++++GF+ +F F+V N++ T F IR+
Sbjct: 99 FSTGKMVITGAKSEDAARRGARKFAAIIRKIGFQPKFGEFKVQNMVATSDAGFPIRLEAL 158
Query: 154 SEKH-RAAEYEPELHPGVTYRITRPKATLKIFSTGGITVT 192
H + + YEPEL PG+ YR+ PK L +F +G + +T
Sbjct: 159 VYAHAKFSSYEPELFPGLIYRLVIPKTVLLLFVSGRMVLT 198
Score = 38.9 bits (89), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 32/64 (50%)
Query: 135 VVNVLGTCSMPFAIRILQFSEKHRAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTAC 194
V NV+ T ++ +I + + R AEY P+ V R+ P+ T +FSTG + +T
Sbjct: 50 VQNVVATVNLRISIDLRTLALNARNAEYNPKKFAAVIMRVREPRCTALVFSTGKMVITGA 109
Query: 195 NDSN 198
+
Sbjct: 110 KSED 113
>gi|37727185|gb|AAO34523.1| TATA-binding protein isoform 4 [Branchiostoma floridae]
Length = 136
Score = 119 bits (299), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 54/118 (45%), Positives = 81/118 (68%), Gaps = 1/118 (0%)
Query: 84 LRKPYTTASIWSSGKITCTGATSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCS 143
+R P TTA I+SSGK+ CTGA SEDQS++AAR+YAR +Q+LGF +F +F++ N++G+C
Sbjct: 1 IRDPRTTALIFSSGKMVCTGAKSEDQSRLAARKYARVVQKLGFPCKFLDFKIQNMVGSCD 60
Query: 144 MPFAIRILQFSEKH-RAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
+ F IR+ H + + YEPEL PG+ YR+ +P+ L IF +G + +T +I
Sbjct: 61 VKFPIRLEGLVLTHAQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLTGAKVREEI 118
>gi|424513557|emb|CCO66179.1| predicted protein [Bathycoccus prasinos]
Length = 289
Score = 119 bits (298), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 64/184 (34%), Positives = 101/184 (54%), Gaps = 37/184 (20%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEY-------------------------------- 73
+ N+V + ++ C L+L+ IA + NVEY
Sbjct: 50 LQNIVATVNLDCKLDLKTIAFHARNVEYNPKVCRAVGGKEIVKTDAFLHHSFHQTFRCAL 109
Query: 74 --RRENGMVTMKLRKPYTTASIWSSGKITCTGATSEDQSKIAARRYARCLQRLGFKARFT 131
++ M++R P TTA I++SGK+ CTGA +E ++ AAR+YA+ + +LGF A+F
Sbjct: 110 LNKQRFAAAIMRIRNPKTTALIFASGKMVCTGAKTEALAREAARKYAKVIIKLGFPAQFK 169
Query: 132 NFRVVNVLGTCSMPFAIRI--LQFSEKHRAAEYEPELHPGVTYRITRPKATLKIFSTGGI 189
+F++ N++G+C + F IR+ L +S H A+YEPEL PG+ YR+ PK L IF +G I
Sbjct: 170 DFKIQNMVGSCDVKFPIRLEGLAWSHGH-FAQYEPELFPGLIYRMQMPKIVLLIFVSGKI 228
Query: 190 TVTA 193
+T
Sbjct: 229 VLTG 232
>gi|357612499|gb|EHJ68033.1| putative TATA binding protein [Danaus plexippus]
Length = 283
Score = 119 bits (298), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 62/160 (38%), Positives = 92/160 (57%), Gaps = 4/160 (2%)
Query: 44 IIINNVVCSFSVRCHLNLRQIALNGVNVEYR--RENGMVTMKLRKPYTTASIWSSGKITC 101
I N + + S+ C LNL I EY R NG+V MK+ +P TA ++ SGKI C
Sbjct: 108 IKFQNCISTVSLDCELNLLDIYCRTRFSEYNPARFNGVV-MKILEPRATALVFRSGKIVC 166
Query: 102 TGATSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKH-RAA 160
TGA + S IAAR++AR +Q+LGF +F +F+V+N L T + F I++ + H +
Sbjct: 167 TGAKNGHDSYIAARKFARIIQKLGFPVKFVDFKVLNFLATADLRFPIKLEALQQAHGQFT 226
Query: 161 EYEPELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
YEPEL G+ YR+ RP+ L IF G + +T + ++
Sbjct: 227 SYEPELFSGLVYRMIRPRVVLLIFVNGKMVITGAKTNQEV 266
>gi|414864598|tpg|DAA43155.1| TPA: hypothetical protein ZEAMMB73_034825 [Zea mays]
Length = 212
Score = 118 bits (295), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 60/179 (33%), Positives = 101/179 (56%), Gaps = 23/179 (12%)
Query: 45 IINNVVCSFSVRCHLNLRQIALNGVNVEYRRENGMVT----------------------M 82
I+ N+V + ++ C ++L+ +A + N EY ++ M
Sbjct: 16 ILQNIVSTVNLECKVDLQHVANSARNAEYNPRVCIIISAAAALFFFFFAWNYIRFAAAIM 75
Query: 83 KLRKPYTTASIWSSGKITCTGATSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTC 142
++R+P TT I++SGK+ CTGA SE S++AAR++AR +Q+LG ARF +F+V N++G+C
Sbjct: 76 RIREPKTTTLIFASGKMVCTGAKSEADSRLAARKFARIVQKLGSPARFKDFKVQNIVGSC 135
Query: 143 SMPFAIRILQFS-EKHRAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
+ F IR+ + +A YEPE+ PG+ YR+ PK + +F +G I +T +I
Sbjct: 136 DLKFPIRLEGLALASGLSATYEPEIFPGLVYRMVDPKVVILVFVSGKIVLTGAKVREEI 194
>gi|351694348|gb|EHA97266.1| TATA box-binding protein-like protein 2 [Heterocephalus glaber]
Length = 354
Score = 117 bits (293), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 50/106 (47%), Positives = 81/106 (76%), Gaps = 1/106 (0%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGA 104
+ N+V + ++ C L+L++IAL+ N EY + V M++R+P TTA I+SSGK+ CTGA
Sbjct: 210 LQNIVSTVNLACKLDLKKIALHAKNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 269
Query: 105 TSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRI 150
SE+QS++AAR+YAR +Q+LGF A+F +F++ N++G+C + F+IR+
Sbjct: 270 KSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVRFSIRL 315
>gi|324518157|gb|ADY47019.1| TATA box-binding protein-like protein 1 [Ascaris suum]
Length = 272
Score = 117 bits (292), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 63/174 (36%), Positives = 105/174 (60%), Gaps = 7/174 (4%)
Query: 27 IQNHAPPQPPAHDPE--VDIIINNVVCSFSVRCHLNLRQIALNGVNVEYRRENGMVTMKL 84
++N Q + E + + I NVVC++++ H++L ++A+N NV + ++ +
Sbjct: 9 LKNGVLSQDDQQNAEGKIGVEIRNVVCTYALPLHIDLHRVAVNCGNVTLDQGRSVLLKQK 68
Query: 85 RKPYTTASIWSSGKITCTGATSEDQSKIAARRYARCLQR-LGFKA---RFTNFRVVNVLG 140
R P I++SGK+ G SE++ K AAR AR +Q+ +G + R N+R+ N+L
Sbjct: 69 RNPLCYVKIYNSGKVYIVGCRSEEECKRAARGVARMVQKGMGKEGQIIRMRNYRICNILA 128
Query: 141 TCSMPFAIRILQFSEKH-RAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTA 193
TC+MPF I+I + + K+ + +YEPEL G+ +R + PKATL+I +TG ITVT
Sbjct: 129 TCNMPFGIKIEEMARKYPKNCDYEPELSVGLVWRSSDPKATLRIHTTGSITVTG 182
>gi|452819885|gb|EME26936.1| transcription initiation factor TFIID TATA-box-binding protein
[Galdieria sulphuraria]
Length = 206
Score = 117 bits (292), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 63/159 (39%), Positives = 102/159 (64%), Gaps = 4/159 (2%)
Query: 46 INNVVCSFSVRC-HLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTG 103
I N+VC+ ++ +L+L+ IA+ N EY + V M++R+P TTA I+SSGKI TG
Sbjct: 30 IVNLVCTVNLGVRNLDLKTIAIKARNAEYNPKRFQAVIMRVREPKTTALIFSSGKIVVTG 89
Query: 104 ATSEDQSKIAARRYARCLQRLGF-KARFTNFRVVNVLGTCSMPFAIRILQFSEKH-RAAE 161
A SE++SK AA+++ +++ G+ +A+F+ F+V NV+GT ++ F IR+ ++ H +
Sbjct: 90 AKSEEESKRAAKKFVVIVRKCGYEEAKFSEFKVQNVVGTSAVDFPIRLEALAQAHTQFCT 149
Query: 162 YEPELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
YEPEL PG+ YR+ PK L IF +G + +T +I
Sbjct: 150 YEPELFPGLVYRMMEPKIVLLIFVSGKLVLTGGKTRKQI 188
>gi|256084656|ref|XP_002578543.1| TATA-box binding protein [Schistosoma mansoni]
gi|353228683|emb|CCD74854.1| putative tata-box binding protein [Schistosoma mansoni]
Length = 211
Score = 116 bits (291), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 64/175 (36%), Positives = 104/175 (59%), Gaps = 14/175 (8%)
Query: 31 APPQPPAHDPE-VDI-------IINNVVCSFSVRCHLNLRQIALNGVNVEY--RRENGMV 80
AP +P D E VD+ +I+N+V + + C + LR++ L+ + EY RR G+V
Sbjct: 14 APQRPIGPDSESVDLLCGIKKPVIHNMVSTVDLGCPIELRKLVLHVRSAEYNPRRFPGVV 73
Query: 81 TMKLRKPYTTASIWSSGKITCTGATSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLG 140
M+LR+P T ++ +G++ CTGA SE + + +R+ AR LQRLGF +F NF + N++G
Sbjct: 74 -MRLREPRVTCLVFGTGRMVCTGARSESDANLGSRKCARILQRLGFDVKFMNFTIQNMVG 132
Query: 141 TCSMPFAIRI--LQFSEKHRAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTA 193
+ F IR+ +Q + + +YEPE+ P + YRI +P+ + IF G I +T
Sbjct: 133 LADLKFPIRLEGVQLANEQ-MTQYEPEIFPALIYRIIKPRLVMLIFVNGKIVMTG 186
>gi|344263933|ref|XP_003404049.1| PREDICTED: TATA box-binding protein-like protein 1-like [Loxodonta
africana]
gi|395834825|ref|XP_003790389.1| PREDICTED: TATA box-binding protein-like protein 1 [Otolemur
garnettii]
Length = 137
Score = 115 bits (289), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 66/158 (41%), Positives = 83/158 (52%), Gaps = 50/158 (31%)
Query: 39 DPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYRRENGMVTMKLRKPYTTASIWSSGK 98
D +DI+I NVVC F RCHLNLR+IAL G NV Y+R+ G++
Sbjct: 6 DVALDILITNVVCVFRTRCHLNLRKIALEGANVIYKRDVGVI------------------ 47
Query: 99 ITCTGATSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKHR 158
FT+F+VVNVL C+MPF IR+ +F++ +R
Sbjct: 48 -------------------------------FTDFKVVNVLAVCNMPFEIRLPEFTKNNR 76
Query: 159 A-AEYEPELHPGVTYRITRPKATLKIFSTGGITVTACN 195
A YEPELHP V YRI +ATL+IFSTG ITVT N
Sbjct: 77 PHASYEPELHPAVCYRIKSLRATLQIFSTGSITVTGPN 114
>gi|291233225|ref|XP_002736554.1| PREDICTED: TBP-like 1-like, partial [Saccoglossus kowalevskii]
Length = 396
Score = 115 bits (289), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 54/91 (59%), Positives = 67/91 (73%), Gaps = 4/91 (4%)
Query: 30 HAPPQPPAHDPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYRRENGMVTMKLRKPYT 89
H P+P A VDI INNVVC FS RCHL+LR+I + G+NVEYRR+ G VTM++RKPY+
Sbjct: 31 HVQPEP-AESQSVDIYINNVVCCFSTRCHLDLRRIGMEGINVEYRRDAGKVTMRIRKPYS 89
Query: 90 TASIWSSGKITCTGATSEDQSKIAA---RRY 117
T++IWSSGKITC GAT + I + RRY
Sbjct: 90 TSTIWSSGKITCAGATRSSSNLIPSGHTRRY 120
>gi|431904621|gb|ELK10003.1| TATA-box-binding protein [Pteropus alecto]
Length = 193
Score = 115 bits (289), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 54/128 (42%), Positives = 85/128 (66%), Gaps = 1/128 (0%)
Query: 24 VVPIQNHAPPQPPAHDPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTM 82
V P+ P P + + + N+V + ++ C L+L+ IAL N EY + V M
Sbjct: 44 VTPMTPITPATPASESSGIVPQLQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIM 103
Query: 83 KLRKPYTTASIWSSGKITCTGATSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTC 142
++R+P TTA I+SSGK+ CTGA SE+QS++AAR+YAR +Q+LGF A+F +F++ N++G+C
Sbjct: 104 RIREPRTTALIFSSGKMVCTGAKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSC 163
Query: 143 SMPFAIRI 150
+ F IR+
Sbjct: 164 DVKFPIRL 171
>gi|322802013|gb|EFZ22550.1| hypothetical protein SINV_10179 [Solenopsis invicta]
Length = 158
Score = 115 bits (288), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 53/134 (39%), Positives = 88/134 (65%), Gaps = 4/134 (2%)
Query: 70 NVEYR--RENGMVTMKLRKPYTTASIWSSGKITCTGATSEDQSKIAARRYARCLQRLGFK 127
N EY R G++ M+++ P TA I+ SGK+ CTGA SE+ S +AA+++AR +Q+LGF
Sbjct: 9 NSEYNPARFTGLI-MRIQNPRATALIFRSGKLVCTGARSEEDSLLAAKKFARIIQKLGFP 67
Query: 128 ARFTNFRVVNVLGTCSMPFAIRILQFSEKH-RAAEYEPELHPGVTYRITRPKATLKIFST 186
+FT F++ N++ TC + F I++ ++ H + + YEPEL+PG+TYR+ P+ L IF
Sbjct: 68 VKFTCFKIQNIVATCDLKFPIKLDNLNQMHGQFSSYEPELYPGLTYRMVLPRVVLLIFVN 127
Query: 187 GGITVTACNDSNKI 200
G + +T + ++
Sbjct: 128 GKVVLTGAKNRTEL 141
>gi|378755540|gb|EHY65566.1| TATA-binding protein, partial [Nematocida sp. 1 ERTm2]
Length = 159
Score = 115 bits (287), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 60/164 (36%), Positives = 95/164 (57%), Gaps = 10/164 (6%)
Query: 15 EQEPPPTQTVVPIQNHAPPQPPAHDPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYR 74
++E P V + H P I N+V + ++ C L+L+ IAL N EY
Sbjct: 4 KEEYAPVDDGVDLSKHPSGLIPT--------IQNIVATVNLCCRLDLKAIALGARNAEYN 55
Query: 75 -RENGMVTMKLRKPYTTASIWSSGKITCTGATSEDQSKIAARRYARCLQRLGFKARFTNF 133
+ V +++RKP TTA I++SGK+ TGA SE+ SK+AA++Y+ ++RLG+ RFT F
Sbjct: 56 PKRFAAVIIRIRKPRTTALIFASGKMVVTGARSEEDSKMAAKKYSIIIRRLGYPVRFTEF 115
Query: 134 RVVNVLGTCSMPFAIRILQFSEKH-RAAEYEPELHPGVTYRITR 176
++ N++ +C F+IR+ H + YEPEL PG+ YR+ +
Sbjct: 116 KIQNIVSSCDTKFSIRLEGLVFGHSNYSSYEPELFPGLIYRMVK 159
>gi|307180303|gb|EFN68336.1| TATA-box-binding protein [Camponotus floridanus]
Length = 252
Score = 114 bits (285), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 70/198 (35%), Positives = 109/198 (55%), Gaps = 16/198 (8%)
Query: 18 PPPTQTVVPIQNHAPPQPPAHDPEV-DIIINNVVCSFSVRCHLNLRQIALNGVNVEYR-- 74
P +Q V P +P P EV + + NVV + ++ L L I + N EY
Sbjct: 39 PSTSQNVNPHSMMSPTIPANSTKEVWEPCLQNVVSTANLGTELKLNYINIRTRNSEYNPA 98
Query: 75 RENGMVTMKLRKPYTTASIWSSGKITCTGATSEDQSKIAARRYARCLQRLGFKARF--TN 132
R G++ M++R P TA I+SSGK+ CTGA SE+ S +AA+R+AR +Q+LGF +F +
Sbjct: 99 RFTGLI-MRIRNPRATALIFSSGKLVCTGAKSENDSFLAAKRFARIIQKLGFPVKFMSDS 157
Query: 133 FRVVNVLGTCSMPFAIRILQFSEKH-RAAEYEPELHPGVTYRITRP---------KATLK 182
F+V N++ TC + F I++ +H + YEPEL+PG+ YR+ P K L
Sbjct: 158 FKVQNIVATCDVKFPIKLENLYREHPQLCSYEPELYPGLIYRVYIPGNRDNPPISKVVLL 217
Query: 183 IFSTGGITVTACNDSNKI 200
IF G + +T + +++
Sbjct: 218 IFVNGKVVLTGAKNIDEL 235
>gi|66359858|ref|XP_627107.1| TATA-box factor binding protein [Cryptosporidium parvum Iowa II]
gi|38491418|gb|AAR21861.1| TATA-binding protein [Cryptosporidium parvum]
gi|46228532|gb|EAK89402.1| TATA-box factor binding protein [Cryptosporidium parvum Iowa II]
gi|323509817|dbj|BAJ77801.1| cgd8_2030 [Cryptosporidium parvum]
Length = 249
Score = 113 bits (282), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 59/162 (36%), Positives = 94/162 (58%), Gaps = 7/162 (4%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGA 104
I N++ S ++C L+LR IA++ N EY ++ V M+LR P T ++ SG++ TGA
Sbjct: 72 IQNIIASVHLQCELDLRMIAISARNAEYNPKKVNAVVMRLRDPKCTGLLFRSGRLMITGA 131
Query: 105 TSEDQSKIAARRYARCLQRLGF-KARFTNFRVVNVLGTCSMPFAIRILQFSEKHRA-AEY 162
E+ +K+ ++ A+ Q+ GF K +FTNF++ N++ T F IR+ + HR Y
Sbjct: 132 RLENDAKLGGKKMAKICQKSGFPKVKFTNFKMENIIATADCKFPIRLEGLAYDHRDFCNY 191
Query: 163 EPELHPGVTYRI----TRPKATLKIFSTGGITVTACNDSNKI 200
EPEL PG+ YR + KA L +F +G + VT C + +I
Sbjct: 192 EPELFPGLVYRYHPDNSPTKAVLLLFVSGKVIVTGCKNYQEI 233
>gi|67611070|ref|XP_667132.1| TATA-binding protein [Cryptosporidium hominis TU502]
gi|54658235|gb|EAL36903.1| TATA-binding protein [Cryptosporidium hominis]
Length = 249
Score = 113 bits (282), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 59/162 (36%), Positives = 94/162 (58%), Gaps = 7/162 (4%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGA 104
I N++ S ++C L+LR IA++ N EY ++ V M+LR P T ++ SG++ TGA
Sbjct: 72 IQNIIASVHLQCELDLRMIAISARNAEYNPKKVNAVVMRLRDPKCTGLLFRSGRLMITGA 131
Query: 105 TSEDQSKIAARRYARCLQRLGF-KARFTNFRVVNVLGTCSMPFAIRILQFSEKHRA-AEY 162
E+ +K+ ++ A+ Q+ GF K +FTNF++ N++ T F IR+ + HR Y
Sbjct: 132 RLENDAKLGGKKMAKICQKSGFPKVKFTNFKMENIIATADCKFPIRLEGLAYDHRDFCNY 191
Query: 163 EPELHPGVTYRI----TRPKATLKIFSTGGITVTACNDSNKI 200
EPEL PG+ YR + KA L +F +G + VT C + +I
Sbjct: 192 EPELFPGLVYRYHPDNSPTKAVLLLFVSGKVIVTGCKNYQEI 233
>gi|18483230|gb|AAL73974.1|AF466201_3 TATA-binding protein [Sorghum bicolor]
Length = 203
Score = 112 bits (281), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 60/158 (37%), Positives = 91/158 (57%), Gaps = 21/158 (13%)
Query: 40 PEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGK 98
P VD N+V + ++ C L+L+ IAL N EY + V M++R+P TTA I++SGK
Sbjct: 56 PRVDF--RNIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGK 113
Query: 99 ITCTGATSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKHR 158
+ YAR +Q+LGF A+F +F++ N++G+C + F IR+ + H
Sbjct: 114 M-----------------YARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHG 156
Query: 159 A-AEYEPELHPGVTYRITRPKATLKIFSTGGITVTACN 195
A + YEPEL PG+ YR+ +PK L IF +G I +T
Sbjct: 157 AFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLTGAK 194
>gi|126723804|gb|ABO26816.1| TATA-box binding protein, partial [Perna canaliculus]
Length = 111
Score = 111 bits (277), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 53/110 (48%), Positives = 78/110 (70%), Gaps = 2/110 (1%)
Query: 57 CHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGATSEDQSKIAAR 115
C L+L++IAL+ N EY + V M++R P TTA I+SSGK+ CTGA SEDQ+K+AAR
Sbjct: 2 CKLDLKRIALHARNAEYNPKRFAAVIMRIRDPRTTALIFSSGKMVCTGAKSEDQAKLAAR 61
Query: 116 RYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKH-RAAEYEP 164
+YAR +Q+LGF A+F +F++ N++G+C + F IR+ H + + YEP
Sbjct: 62 KYARIVQKLGFAAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQFSSYEP 111
>gi|167387263|ref|XP_001738088.1| TATA-box-binding protein [Entamoeba dispar SAW760]
gi|165898834|gb|EDR25598.1| TATA-box-binding protein, putative [Entamoeba dispar SAW760]
Length = 234
Score = 110 bits (275), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 60/158 (37%), Positives = 98/158 (62%), Gaps = 4/158 (2%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEY--RRENGMVTMKLRKPYTTASIWSSGKITCTG 103
I NVV +F + L LR+I N EY +R G + M++ P +TA I+ +GKI CTG
Sbjct: 56 IVNVVSTFQLGVKLELRKIVQKARNAEYNPKRFAGAI-MRISSPKSTALIFQTGKIVCTG 114
Query: 104 ATSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKHRA-AEY 162
S ++SKIA+++YA+ ++++G+ ++NF V N++G+C + F I + + + A +Y
Sbjct: 115 TRSIEESKIASKKYAKIIKKIGYPIHYSNFNVQNIVGSCDVKFQIALRALVDSYLAFCQY 174
Query: 163 EPELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
EPE+ PG+ YR+ PK TL +FSTG + +T D +
Sbjct: 175 EPEVFPGLVYRMASPKVTLLVFSTGKVVLTGAKDEESL 212
Score = 44.7 bits (104), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 32/60 (53%)
Query: 134 RVVNVLGTCSMPFAIRILQFSEKHRAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTA 193
+VNV+ T + + + + +K R AEY P+ G RI+ PK+T IF TG I T
Sbjct: 55 EIVNVVSTFQLGVKLELRKIVQKARNAEYNPKRFAGAIMRISSPKSTALIFQTGKIVCTG 114
>gi|183235483|ref|XP_001914239.1| transcription initiation factor TFIID [Entamoeba histolytica
HM-1:IMSS]
gi|3915894|sp|P52653.2|TBP1_ENTHI RecName: Full=TATA-box-binding protein 1; Short=EhTBP; AltName:
Full=TATA sequence-binding protein; AltName:
Full=TATA-binding factor; AltName: Full=TATA-box factor;
AltName: Full=Transcription initiation factor TFIID TBP
subunit
gi|3201503|emb|CAA88304.1| TATA box-binding protein [Entamoeba histolytica]
gi|169800528|gb|EDS88986.1| transcription initiation factor TFIID, putative [Entamoeba
histolytica HM-1:IMSS]
gi|449703333|gb|EMD43805.1| transcription initiation factor tfiid, putative [Entamoeba
histolytica KU27]
Length = 234
Score = 110 bits (275), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 60/158 (37%), Positives = 98/158 (62%), Gaps = 4/158 (2%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEY--RRENGMVTMKLRKPYTTASIWSSGKITCTG 103
I NVV +F + L LR+I N EY +R G + M++ P +TA I+ +GKI CTG
Sbjct: 56 IVNVVSTFQLGVKLELRKIVQKARNAEYNPKRFAGAI-MRISSPKSTALIFQTGKIVCTG 114
Query: 104 ATSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKHRA-AEY 162
S ++SKIA+++YA+ ++++G+ ++NF V N++G+C + F I + + + A +Y
Sbjct: 115 TRSIEESKIASKKYAKIIKKIGYPIHYSNFNVQNIVGSCDVKFQIALRTLVDSYLAFCQY 174
Query: 163 EPELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
EPE+ PG+ YR+ PK TL +FSTG + +T D +
Sbjct: 175 EPEVFPGLVYRMASPKVTLLVFSTGKVVLTGAKDEESL 212
Score = 44.7 bits (104), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 32/60 (53%)
Query: 134 RVVNVLGTCSMPFAIRILQFSEKHRAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTA 193
+VNV+ T + + + + +K R AEY P+ G RI+ PK+T IF TG I T
Sbjct: 55 EIVNVVSTFQLGVKLELRKIVQKARNAEYNPKRFAGAIMRISSPKSTALIFQTGKIVCTG 114
>gi|167387403|ref|XP_001738146.1| TATA-box-binding protein [Entamoeba dispar SAW760]
gi|165898721|gb|EDR25505.1| TATA-box-binding protein [Entamoeba dispar SAW760]
Length = 212
Score = 110 bits (275), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 60/158 (37%), Positives = 98/158 (62%), Gaps = 4/158 (2%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEY--RRENGMVTMKLRKPYTTASIWSSGKITCTG 103
I NVV +F + L LR+I N EY +R G + M++ P +TA I+ +GKI CTG
Sbjct: 34 IVNVVSTFQLGVKLELRKIVQKARNAEYNPKRFAGAI-MRISSPKSTALIFQTGKIVCTG 92
Query: 104 ATSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKHRA-AEY 162
S ++SKIA+++YA+ ++++G+ ++NF V N++G+C + F I + + + A +Y
Sbjct: 93 TRSIEESKIASKKYAKIIKKIGYPIHYSNFNVQNIVGSCDVKFQIALRALVDSYLAFCQY 152
Query: 163 EPELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
EPE+ PG+ YR+ PK TL +FSTG + +T D +
Sbjct: 153 EPEVFPGLVYRMASPKVTLLVFSTGKVVLTGAKDEESL 190
Score = 45.1 bits (105), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 32/60 (53%)
Query: 134 RVVNVLGTCSMPFAIRILQFSEKHRAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTA 193
+VNV+ T + + + + +K R AEY P+ G RI+ PK+T IF TG I T
Sbjct: 33 EIVNVVSTFQLGVKLELRKIVQKARNAEYNPKRFAGAIMRISSPKSTALIFQTGKIVCTG 92
>gi|67473541|ref|XP_652533.1| transcription initiation factor TFIID [Entamoeba histolytica
HM-1:IMSS]
gi|296439770|sp|C4M7H7.1|TBP2_ENTHI RecName: Full=TATA-box-binding protein 2; Short=EhTBP2; AltName:
Full=TATA sequence-binding protein; AltName:
Full=TATA-binding factor; AltName: Full=TATA-box factor;
AltName: Full=Transcription initiation factor TFIID TBP
subunit
gi|56469391|gb|EAL47145.1| transcription initiation factor TFIID, putative [Entamoeba
histolytica HM-1:IMSS]
Length = 212
Score = 110 bits (274), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 60/158 (37%), Positives = 98/158 (62%), Gaps = 4/158 (2%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEY--RRENGMVTMKLRKPYTTASIWSSGKITCTG 103
I NVV +F + L LR+I N EY +R G + M++ P +TA I+ +GKI CTG
Sbjct: 34 IVNVVSTFQLGVKLELRKIVQKARNAEYNPKRFAGAI-MRISSPKSTALIFQTGKIVCTG 92
Query: 104 ATSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKHRA-AEY 162
S ++SKIA+++YA+ ++++G+ ++NF V N++G+C + F I + + + A +Y
Sbjct: 93 TRSIEESKIASKKYAKIIKKIGYPIHYSNFNVQNIVGSCDVKFQIALRTLVDSYLAFCQY 152
Query: 163 EPELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
EPE+ PG+ YR+ PK TL +FSTG + +T D +
Sbjct: 153 EPEVFPGLVYRMASPKVTLLVFSTGKVVLTGAKDEESL 190
Score = 45.1 bits (105), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 32/60 (53%)
Query: 134 RVVNVLGTCSMPFAIRILQFSEKHRAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTA 193
+VNV+ T + + + + +K R AEY P+ G RI+ PK+T IF TG I T
Sbjct: 33 EIVNVVSTFQLGVKLELRKIVQKARNAEYNPKRFAGAIMRISSPKSTALIFQTGKIVCTG 92
>gi|219113475|ref|XP_002186321.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|209583171|gb|ACI65791.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 203
Score = 110 bits (274), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 60/154 (38%), Positives = 91/154 (59%), Gaps = 3/154 (1%)
Query: 44 IIINNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCT 102
I I N+ + ++ L+L++IAL N E+ R G V M+LR+P TA I+SSGK+ T
Sbjct: 2 IRIQNMSSTVNLGTRLDLKKIALKCRNTEFNPRRFGAVIMRLREPRATALIFSSGKMCVT 61
Query: 103 GATSEDQSKIAARRYARCLQRLGFKARFT-NFRVVNVLGTCSMPFAIRILQFSEKHRA-A 160
G S + +AA+++A ++R+GFK + +F+V N++GT + F IR+ H A A
Sbjct: 62 GVKSTHNANLAAKKFAYIVERVGFKPKENIDFKVQNIVGTADVGFPIRLEGLVYAHSAFA 121
Query: 161 EYEPELHPGVTYRITRPKATLKIFSTGGITVTAC 194
YEPEL PG+ YR P+ IF +G I +T
Sbjct: 122 SYEPELFPGLIYRFVNPRVVFLIFVSGKIVITGA 155
>gi|258563652|ref|XP_002582571.1| TATA-box binding protein [Uncinocarpus reesii 1704]
gi|237908078|gb|EEP82479.1| TATA-box binding protein [Uncinocarpus reesii 1704]
Length = 251
Score = 110 bits (274), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 56/155 (36%), Positives = 90/155 (58%), Gaps = 19/155 (12%)
Query: 48 NVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGATS 106
N+V + ++ C L+L+ IAL+ N EY + V M++R+P TTA I++SGK+ TGA +
Sbjct: 91 NIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGAKN 150
Query: 107 EDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKH-RAAEYEPE 165
GF A+FT+F++ N++G+C + F+IR+ + +H + YEPE
Sbjct: 151 S-----------------GFNAKFTDFKIQNIVGSCDIKFSIRLEGLASRHHNFSSYEPE 193
Query: 166 LHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
L PG+ YR+ +PK L IF +G I +T +I
Sbjct: 194 LFPGLIYRMMKPKIVLLIFVSGKIVLTGAKVREEI 228
>gi|281203489|gb|EFA77689.1| TATA-binding protein [Polysphondylium pallidum PN500]
Length = 192
Score = 109 bits (273), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 48/116 (41%), Positives = 79/116 (68%), Gaps = 1/116 (0%)
Query: 45 IINNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTG 103
++ N+V + ++ L+L+ IAL N EY + V M++R+P TTA I+ SGK+ CTG
Sbjct: 29 VLQNIVSTVNMGTQLDLKTIALGARNAEYNPKRFAAVIMRIREPKTTALIFKSGKMVCTG 88
Query: 104 ATSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKHRA 159
A SE+ SK+AAR+YAR +Q+L F A+FT+F++ N++G+C + F I++ + H +
Sbjct: 89 AKSEEASKLAARKYARIIQKLDFPAQFTDFKIQNIVGSCDVKFPIKLEMLNNTHNS 144
>gi|403278005|ref|XP_003930626.1| PREDICTED: TATA box-binding protein-like protein 2 [Saimiri
boliviensis boliviensis]
Length = 381
Score = 109 bits (272), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 57/167 (34%), Positives = 95/167 (56%), Gaps = 19/167 (11%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYRRE-----------NGMVTMKLRKPYTTASIW 94
+ N+V + ++ C L+L++IAL+ N EY + + + KP S
Sbjct: 205 LQNIVSTVNLACKLDLKKIALHAKNAEYNPKLCGEPWHIFSYDYQPNLPCVKPLR--SFT 262
Query: 95 SSGKITCTGATSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFS 154
S G C E+QS++AAR+YAR +Q+LGF ARF +F++ N++G+C + F IR+
Sbjct: 263 SPGSANC-----EEQSRLAARKYARVVQKLGFPARFLDFKIQNMVGSCDVKFPIRLEGLV 317
Query: 155 EKHRA-AEYEPELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
H+ + YEPEL PG+ YR+ +P+ L IF +G + +T + ++I
Sbjct: 318 LTHQQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLTGAKERSEI 364
>gi|145494864|ref|XP_001433426.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124400543|emb|CAK66029.1| unnamed protein product [Paramecium tetraurelia]
Length = 208
Score = 108 bits (271), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 60/154 (38%), Positives = 89/154 (57%), Gaps = 6/154 (3%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGA 104
I NVV + + LNL I+ EY + V M+L P TTA I+ SGK+ CTGA
Sbjct: 27 IQNVVSTVDLGTELNLVVISNGARMAEYNPKRFSAVIMRLNNPSTTALIFQSGKMVCTGA 86
Query: 105 TSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKHR---AAE 161
SEDQS +AAR+YA+ +Q+LGF A F NF + N++ + I++ +F++ + +
Sbjct: 87 KSEDQSLVAARKYAKIIQKLGFPAVFKNFTIQNIVASFDFRKPIKLDEFTKDQQYRPVVQ 146
Query: 162 YEPELHPGVTYR--ITRPKATLKIFSTGGITVTA 193
YEPE+ PG+ +R + K TL IF +G +T
Sbjct: 147 YEPEIFPGLIFRKITDQKKITLLIFVSGRCVITG 180
>gi|76155499|gb|AAX26791.2| SJCHGC06425 protein [Schistosoma japonicum]
Length = 227
Score = 107 bits (268), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 57/178 (32%), Positives = 105/178 (58%), Gaps = 14/178 (7%)
Query: 28 QNHAPPQPPAHDPE-VDI-------IINNVVCSFSVRCHLNLRQIALNGVNVEY--RREN 77
+ AP +P D + +D+ +I+N+V + + C + LR++ L+ + EY RR
Sbjct: 27 KQMAPQRPVGPDSDSLDLLCGIRKPVIHNMVSTVDLGCPIELRKLVLHVRSAEYNPRRFP 86
Query: 78 GMVTMKLRKPYTTASIWSSGKITCTGATSEDQSKIAARRYARCLQRLGFKARFTNFRVVN 137
G+V ++LR+P T ++ +G++ CTGA SE + + +R+ AR +Q+LGF +F NF + N
Sbjct: 87 GVV-IRLREPRVTCLVFGTGRMVCTGARSEADANLGSRKCARIIQKLGFDVKFMNFTIQN 145
Query: 138 VLGTCSMPFAIRI--LQFSEKHRAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTA 193
++G + F +R+ +Q + + +YEPE+ P + YRI +P+ + IF G + +T
Sbjct: 146 MVGLADLRFPVRLEGVQLANEQ-MTQYEPEIFPALIYRIIKPRLVMLIFVNGKVVMTG 202
>gi|1078776|pir||S52407 TATA box-binding protein - Entamoeba histolytica
Length = 233
Score = 107 bits (268), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 59/158 (37%), Positives = 96/158 (60%), Gaps = 4/158 (2%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEY--RRENGMVTMKLRKPYTTASIWSSGKITCTG 103
I NVV F + L LR+I +N Y +R G + M++ P +TA I+ +GKI CTG
Sbjct: 55 IVNVVSRFQLGVKLELRKIVQKAINAIYNPKRFAGAI-MRISSPKSTALIFQTGKIVCTG 113
Query: 104 ATSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKHRA-AEY 162
S ++SKIA+++YA+ ++++G+ ++NF V N++G+C + F I + + A +Y
Sbjct: 114 TRSIEESKIASKKYAKIIKKIGYPIHYSNFNVQNIVGSCDVKFQIALRTLVDSDLAFCQY 173
Query: 163 EPELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
EPE+ PG+ YR+ PK TL +FSTG + +T D +
Sbjct: 174 EPEVFPGLVYRMASPKVTLLVFSTGKVVLTGAKDEESL 211
>gi|226466670|emb|CAX69470.1| TATA box binding protein like 2 [Schistosoma japonicum]
Length = 212
Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 95/153 (62%), Gaps = 6/153 (3%)
Query: 45 IINNVVCSFSVRCHLNLRQIALNGVNVEY--RRENGMVTMKLRKPYTTASIWSSGKITCT 102
+I+N+V + + C + LR++ L+ + EY RR G+V ++LR+P T ++ +G++ CT
Sbjct: 37 VIHNMVSTVDLGCPIELRKLVLHVRSAEYNPRRFPGVV-IRLREPRVTCLVFGTGRMVCT 95
Query: 103 GATSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRI--LQFSEKHRAA 160
GA SE + + +R+ AR +Q+LGF +F NF + N++G + F +R+ +Q + +
Sbjct: 96 GARSEADANLGSRKCARIIQKLGFDVKFMNFTIQNMVGLADLRFPVRLEGVQLANEQ-MT 154
Query: 161 EYEPELHPGVTYRITRPKATLKIFSTGGITVTA 193
+YEPE+ P + YRI +P+ + IF G + +T
Sbjct: 155 QYEPEIFPALIYRIIKPRLVMLIFVNGKVVMTG 187
>gi|432937597|ref|XP_004082456.1| PREDICTED: LOW QUALITY PROTEIN: TATA box-binding protein-like
protein 2-like [Oryzias latipes]
Length = 354
Score = 107 bits (267), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 56/142 (39%), Positives = 88/142 (61%), Gaps = 3/142 (2%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGA 104
+ N+V + ++ C L+L+ IA N EY + V M++R+P TTA I+SSGK+ CTGA
Sbjct: 179 LQNIVSTVTLGCPLDLKFIARQARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 238
Query: 105 TSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKHRA-AEYE 163
SE++S++AAR+YAR +Q+LGF ARF F++ N++ +C + F IR+ H+ + Y+
Sbjct: 239 KSEEESRLAARKYARVVQKLGFSARFLEFKIQNMVASCDVCFPIRLEGLVLTHQQFSRYQ 298
Query: 164 PELHPGVTY-RITRPKATLKIF 184
HP ++ PK L F
Sbjct: 299 SHQHPTNSWTSCXFPKMLLCFF 320
>gi|440298942|gb|ELP91557.1| TATA-box-binding protein, putative [Entamoeba invadens IP1]
Length = 233
Score = 105 bits (262), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 62/159 (38%), Positives = 102/159 (64%), Gaps = 5/159 (3%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEY--RRENGMVTMKLRKPYTTASIWSSGKITCTG 103
I NVV +F + L+LR+I N EY +R G + M++ P +TA I+ +GKI CTG
Sbjct: 54 IVNVVSTFQLNQQLDLRKIVQKARNAEYNPKRFAGAI-MRISSPKSTALIFQTGKIVCTG 112
Query: 104 ATSEDQSKIAARRYARCLQRLGF-KARFTNFRVVNVLGTCSMPFAIRILQFSEKH-RAAE 161
S ++SKIAA++YA+ ++++G+ + RF+NF V N++G+C + F I + + + +
Sbjct: 113 TRSIEESKIAAKKYAKIIKKIGYNEVRFSNFNVQNIVGSCDVKFQISLRSLYDSNTDMCQ 172
Query: 162 YEPELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
YEPE+ PG+ +R+T+PK TL +FSTG + +T D +
Sbjct: 173 YEPEVFPGLVFRMTQPKVTLLVFSTGKVVLTGAKDDESL 211
Score = 43.5 bits (101), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 32/60 (53%)
Query: 134 RVVNVLGTCSMPFAIRILQFSEKHRAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTA 193
+VNV+ T + + + + +K R AEY P+ G RI+ PK+T IF TG I T
Sbjct: 53 EIVNVVSTFQLNQQLDLRKIVQKARNAEYNPKRFAGAIMRISSPKSTALIFQTGKIVCTG 112
>gi|440294161|gb|ELP87178.1| TATA-box-binding protein, putative [Entamoeba invadens IP1]
Length = 233
Score = 105 bits (262), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 62/159 (38%), Positives = 102/159 (64%), Gaps = 5/159 (3%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEY--RRENGMVTMKLRKPYTTASIWSSGKITCTG 103
I NVV +F + L+LR+I N EY +R G + M++ P +TA I+ +GKI CTG
Sbjct: 54 IVNVVSTFQLNQQLDLRKIVQKARNAEYNPKRFAGAI-MRISSPKSTALIFQTGKIVCTG 112
Query: 104 ATSEDQSKIAARRYARCLQRLGF-KARFTNFRVVNVLGTCSMPFAIRILQFSEKH-RAAE 161
S ++SKIAA++YA+ ++++G+ + RF+NF V N++G+C + F I + + + +
Sbjct: 113 TRSIEESKIAAKKYAKIIKKIGYNEVRFSNFNVQNIVGSCDVKFQISLRSLYDSNTDMCQ 172
Query: 162 YEPELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
YEPE+ PG+ +R+T+PK TL +FSTG + +T D +
Sbjct: 173 YEPEVFPGLVFRMTQPKVTLLVFSTGKVVLTGAKDDESL 211
Score = 43.5 bits (101), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 32/60 (53%)
Query: 134 RVVNVLGTCSMPFAIRILQFSEKHRAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTA 193
+VNV+ T + + + + +K R AEY P+ G RI+ PK+T IF TG I T
Sbjct: 53 EIVNVVSTFQLNQQLDLRKIVQKARNAEYNPKRFAGAIMRISSPKSTALIFQTGKIVCTG 112
>gi|195964300|gb|ACG60161.1| TATA binding protein [Notothenia coriiceps]
Length = 171
Score = 105 bits (262), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 56/141 (39%), Positives = 87/141 (61%), Gaps = 3/141 (2%)
Query: 2 TTAGMTTTHSSHSEQEPPPTQTVVPIQNHAPPQPPAHDPEVDIIINNVVCSFSVRCHLNL 61
T AG TTT + P + P+ P P + + + N+V + ++ C L+L
Sbjct: 33 TVAGSTTT--ALPGNTPLYNTPLTPMTPATPATPASESSGIVPQLQNIVSTVNLGCKLDL 90
Query: 62 RQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGATSEDQSKIAARRYARC 120
+ IAL N EY + V M++R+P TTA I+SSGK+ CTGA SE+QS++AAR+YAR
Sbjct: 91 KTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKSEEQSRLAARKYARV 150
Query: 121 LQRLGFKARFTNFRVVNVLGT 141
+Q+LGF A+F +F++ N++G+
Sbjct: 151 VQKLGFPAKFLDFKIQNMVGS 171
>gi|291191925|gb|ADD83026.1| TATA box binding protein [Gobiocypris rarus]
Length = 224
Score = 105 bits (261), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 50/121 (41%), Positives = 79/121 (65%), Gaps = 1/121 (0%)
Query: 21 TQTVVPIQNHAPPQPPAHDPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGM 79
T + P+ P P + + + N+V + ++ C L+L+ IAL N EY +
Sbjct: 104 TTPLTPMTPITPATPASESSGIVPQLQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAA 163
Query: 80 VTMKLRKPYTTASIWSSGKITCTGATSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVL 139
V M++R+P TTA I+SSGK+ CTGA SE+QS++AAR+YAR +Q+LGF A+F +F++ N++
Sbjct: 164 VIMRIREPRTTALIFSSGKMVCTGAKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMV 223
Query: 140 G 140
G
Sbjct: 224 G 224
>gi|224009416|ref|XP_002293666.1| transcription factor IID, TATA box binding protein [Thalassiosira
pseudonana CCMP1335]
gi|220970338|gb|EED88675.1| transcription factor IID, TATA box binding protein [Thalassiosira
pseudonana CCMP1335]
Length = 167
Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 54/147 (36%), Positives = 86/147 (58%), Gaps = 3/147 (2%)
Query: 57 CHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGATSEDQSKIAAR 115
L+L+QIAL N E+ R V M+LR+P TA ++SSG++ TG S +A +
Sbjct: 6 VRLDLKQIALRCRNTEFNPRRFAAVIMRLREPRATALLFSSGRMVITGTKSSHNCSLATK 65
Query: 116 RYARCLQRLGFK-ARFTNFRVVNVLGTCSMPFAIRILQFSEKH-RAAEYEPELHPGVTYR 173
++A L+R+GF+ A F +F++ NV+GT + F IR+ H + YEPEL PG+ YR
Sbjct: 66 KFAYILERVGFQPAGFIDFKIQNVVGTVDVGFPIRLEGVVYAHPTFSSYEPELFPGLIYR 125
Query: 174 ITRPKATLKIFSTGGITVTACNDSNKI 200
+ +P+ L IF +G + +T ++
Sbjct: 126 LVQPRVVLLIFVSGKVVITGAKTEEQM 152
>gi|367033977|ref|XP_003666271.1| hypothetical protein MYCTH_2310794 [Myceliophthora thermophila ATCC
42464]
gi|347013543|gb|AEO61026.1| hypothetical protein MYCTH_2310794 [Myceliophthora thermophila ATCC
42464]
Length = 242
Score = 104 bits (259), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 59/157 (37%), Positives = 99/157 (63%), Gaps = 2/157 (1%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEY-RRENGMVTMKLRKPYTTASIWSSGKITCTGA 104
I NVV + S+ C L+L+ IA + NVEY RR+ + M++R+P TT +++SG++ TGA
Sbjct: 54 IQNVVATASLECRLDLQAIAQHARNVEYNRRKFHALVMRIREPRTTTLVFASGRMVVTGA 113
Query: 105 TSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKH-RAAEYE 163
S +++AARR+AR +Q+ GF R +FRV N +G+ + F +R+ + S ++ ++A +E
Sbjct: 114 KSAGLARLAARRHARAIQKCGFPTRLADFRVQNFVGSAACGFLVRLERISHRYWQSARHE 173
Query: 164 PELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
PEL PG+ Y + RP +F+TG + +T +
Sbjct: 174 PELFPGLVYTMVRPSLKCLVFTTGKVVLTGAKKREDV 210
>gi|195964298|gb|ACG60160.1| TATA binding protein [Chaenocephalus aceratus]
Length = 173
Score = 103 bits (258), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 56/141 (39%), Positives = 87/141 (61%), Gaps = 3/141 (2%)
Query: 2 TTAGMTTTHSSHSEQEPPPTQTVVPIQNHAPPQPPAHDPEVDIIINNVVCSFSVRCHLNL 61
T AG TTT + P + P+ P P + + + N+V + ++ C L+L
Sbjct: 35 TVAGSTTT--ALPGNTPLYNTPLTPMTPITPATPASESSGIVPQLQNIVPTVNLGCKLDL 92
Query: 62 RQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGATSEDQSKIAARRYARC 120
+ IAL N EY + V M++R+P TTA I+SSGK+ CTGA SE+QS++AAR+YAR
Sbjct: 93 KTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKSEEQSRLAARKYARV 152
Query: 121 LQRLGFKARFTNFRVVNVLGT 141
+Q+LGF A+F +F++ N++G+
Sbjct: 153 VQKLGFPAKFLDFKIQNMVGS 173
>gi|195964302|gb|ACG60162.1| TATA binding protein [Chionodraco rastrospinosus]
Length = 173
Score = 103 bits (256), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 55/141 (39%), Positives = 86/141 (60%), Gaps = 3/141 (2%)
Query: 2 TTAGMTTTHSSHSEQEPPPTQTVVPIQNHAPPQPPAHDPEVDIIINNVVCSFSVRCHLNL 61
T AG TTT + P + P+ P P + + + N+V + ++ C L+L
Sbjct: 35 TVAGSTTT--ALPGNTPLYNTPLTPMTPITPATPASESSGIVPQLQNIVSTVNLGCKLDL 92
Query: 62 RQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGATSEDQSKIAARRYARC 120
+ IAL N EY + V M++R+P TTA I+SSGK+ C GA SE+QS++AAR+YAR
Sbjct: 93 KTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCAGAKSEEQSRLAARKYARV 152
Query: 121 LQRLGFKARFTNFRVVNVLGT 141
+Q+LGF A+F +F++ N++G+
Sbjct: 153 VQKLGFPAKFLDFKIQNMVGS 173
>gi|209877002|ref|XP_002139943.1| TATA-box-binding protein [Cryptosporidium muris RN66]
gi|209555549|gb|EEA05594.1| TATA-box-binding protein, putative [Cryptosporidium muris RN66]
Length = 211
Score = 103 bits (256), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 55/162 (33%), Positives = 93/162 (57%), Gaps = 7/162 (4%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGA 104
I N++ S ++C L+LR IA++ N EY ++ V M+LR+P T ++ SG++ TGA
Sbjct: 34 IQNIIASVHLQCELDLRSIAISARNAEYNPKKVNAVVMRLREPRCTGLLFRSGRMMITGA 93
Query: 105 TSEDQSKIAARRYARCLQRLGF-KARFTNFRVVNVLGTCSMPFAIRILQFSEKHRA-AEY 162
+E+ ++ ++ A+ Q+ G + +F+NFR+ N++ T F IR+ + HR Y
Sbjct: 94 RNENDARYGGKKMAKICQKSGHPRVKFSNFRMENMIATADCKFPIRLEGLAYDHREFCNY 153
Query: 163 EPELHPGVTYRI----TRPKATLKIFSTGGITVTACNDSNKI 200
EPEL PG+ YR + KA + +F +G + VT C +I
Sbjct: 154 EPELFPGLVYRYHPENSPTKAVILLFVSGKVIVTGCRSYKEI 195
>gi|16517082|gb|AAL24503.1|AF418015_1 TATA box-binding protein-like protein [Crypthecodinium cohnii]
Length = 220
Score = 103 bits (256), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 62/190 (32%), Positives = 100/190 (52%), Gaps = 8/190 (4%)
Query: 19 PPTQTVVPIQNHAPPQPPAHDPE---VDIIINNVVCSFSVRCHLNLRQIALNGVNVEYR- 74
P T P+Q P PE + ++ F++RC ++LRQ+A + EY
Sbjct: 15 PTEPTAEPMQETDLPDNAEDLPEEVAASVTAFTIMAKFNLRCEIDLRQLAFALRHAEYNP 74
Query: 75 RENGMVTMKLRKPYTTASIWSSGKITCTGATSEDQSKIAARRYARCLQRLG---FKARFT 131
R++ +T++L +P TA + SSG ++ TG D+ K +A++ AR +QR G K +F
Sbjct: 75 RKHSSLTLRLVEPRATAMVRSSGVVSITGVLDLDELKQSAKKVARLVQRSGEGHEKVKFA 134
Query: 132 NFRVVNVLGTCSMPFAIRILQFSEK-HRAAEYEPELHPGVTYRITRPKATLKIFSTGGIT 190
F + ++L SM F IR+ Q + K R A YEPEL+ G +R TRPK T + S G +
Sbjct: 135 GFTICSILAKASMGFPIRLDQLAAKWRRNALYEPELYCGCIFRTTRPKCTYLLTSGGKVM 194
Query: 191 VTACNDSNKI 200
++ + +
Sbjct: 195 ISGFRNMEDV 204
>gi|325185920|emb|CCA20424.1| TATAboxbinding protein putative [Albugo laibachii Nc14]
Length = 203
Score = 102 bits (253), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 52/160 (32%), Positives = 89/160 (55%), Gaps = 5/160 (3%)
Query: 40 PEVDIIINNVVCSFSVRCHLNLRQIALNGVN-VEYRRENGMVTMKLRKPYTTASIWSSGK 98
P +DI NVVCS ++ +L + + E + + MK+ P TTA ++S+GK
Sbjct: 7 PRLDI--KNVVCSANLGMRFDLTDLLIKSQKRAELVPKKNCILMKIPSPDTTAMLFSNGK 64
Query: 99 ITCTGATSEDQSKIAARRYARCLQRLGF-KARFTNFRVVNVLGTCSMPFAIRILQFSEKH 157
+ TGA SEDQ K AAR++ + +Q++ + +F++ N++G C + F I + +F+ H
Sbjct: 65 LVVTGANSEDQVKTAARKFTQIIQKMDYPGVNLIDFKIRNIIGNCDVGFRILMEKFAAAH 124
Query: 158 RA-AEYEPELHPGVTYRITRPKATLKIFSTGGITVTACND 196
+ YEPEL+P + YR+ P + +F +G + T D
Sbjct: 125 ASRCIYEPELYPALIYRLAHPSVKILVFVSGKVVFTGSKD 164
>gi|389748066|gb|EIM89244.1| TATA-box binding protein-like protein [Stereum hirsutum FP-91666
SS1]
Length = 249
Score = 101 bits (252), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 52/140 (37%), Positives = 83/140 (59%), Gaps = 5/140 (3%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGA 104
+ +V + ++ C L+L+ IAL+ N EY + + + +R P TA I+ SGK+ T A
Sbjct: 50 LQTIVVTVNLDCRLDLKTIALHARNAEYTPKCFAAIIVCIRDPKMTALIFPSGKMIVTDA 109
Query: 105 TSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKHRAAEYEP 164
SED S++A R+YAR +Q+LGF A+F+ F++ N++ +C + F IR+ E
Sbjct: 110 KSEDDSRLAPRKYARIVQKLGFNAKFSEFKIQNIVRSCDIKFFIRL----EGLAYITGSS 165
Query: 165 ELHPGVTYRITRPKATLKIF 184
L PG+ YR+ +PK L IF
Sbjct: 166 ALFPGLIYRMIKPKVVLLIF 185
>gi|398412558|ref|XP_003857600.1| hypothetical protein MYCGRDRAFT_32491 [Zymoseptoria tritici IPO323]
gi|339477485|gb|EGP92576.1| hypothetical protein MYCGRDRAFT_32491 [Zymoseptoria tritici IPO323]
Length = 177
Score = 101 bits (251), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 50/156 (32%), Positives = 84/156 (53%), Gaps = 1/156 (0%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGA 104
++NVV ++ C L+L+ IAL+ N YR + V ++ R+P +TA I+ SGK+ G
Sbjct: 5 VHNVVAGVNLNCRLDLKHIALSVRNASYRPKRFPAVVVRQREPRSTALIFRSGKMQIVGT 64
Query: 105 TSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKHRAAEYEP 164
S D +++A R++AR LQ+LG++ RF +F V N++ I + YEP
Sbjct: 65 KSVDDARLAGRKFARMLQKLGYQPRFEDFTVQNMVANVDTRMTIHLEGLMLTPGTHNYEP 124
Query: 165 ELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
EL PG +R+ P T +F +G + + + +
Sbjct: 125 ELFPGAAFRMVDPLVTFLVFHSGKVVLLKAKNEEDM 160
>gi|8777985|gb|AAF79169.1| TATA-box binding protein 2 [Habrotrocha constricta]
Length = 108
Score = 101 bits (251), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 48/102 (47%), Positives = 70/102 (68%), Gaps = 1/102 (0%)
Query: 57 CHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGATSEDQSKIAAR 115
C L+L++IAL N EY + V M++R P TTA I+SSGK+ CTGA SE+ S AAR
Sbjct: 3 CQLDLKRIALQARNAEYNPKRFAAVIMRIRSPRTTALIFSSGKMVCTGAKSEEDSIQAAR 62
Query: 116 RYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKH 157
RYAR +Q+LGF A+F +F++ N++G+ + F I++ + KH
Sbjct: 63 RYARVIQKLGFPAKFLDFKIQNMVGSADVSFKIQLEALALKH 104
>gi|348523966|ref|XP_003449494.1| PREDICTED: TATA box-binding protein-like protein 2-like
[Oreochromis niloticus]
Length = 319
Score = 100 bits (250), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 64/185 (34%), Positives = 105/185 (56%), Gaps = 11/185 (5%)
Query: 11 SSHSEQEPPPTQTVVPIQNHAPPQPPAHDPEVDIIINNVVCSFSVRCHLNLRQIALNGVN 70
SS SE +P P P + P++ + +I NV+ + + C L+L+ IA N
Sbjct: 91 SSSSELKPLPVNPGTPADPETLKEKPSN---LVPVICNVISTVDLGCSLDLKFIARRMWN 147
Query: 71 VEYRREN--GMVTMKLRKPYTTASIWSSGKITCTGATSEDQSKIAARRYARCLQRLGFKA 128
VEY+ + G++ ++R+P T +I+ SGKI G S ++S++AAR++AR LQ+ GF
Sbjct: 148 VEYKPQTFTGIIA-RIREPEATVTIFQSGKIISLGTKSVEESRLAARKFARKLQKFGFPV 206
Query: 129 RFTNFRVVNVLGTCSMPFAIRILQFSEKHRA-AEYEPELHPGVTY-RITRPKATLKIFST 186
RF NF++ N++ C F + + + + HR YEPE++ G+ +IT + +L FST
Sbjct: 207 RFLNFKIQNIVAFCQT-FPVDLAELQKVHRGQCSYEPEMYNGLVLDQITGIRVSL--FST 263
Query: 187 GGITV 191
G I V
Sbjct: 264 GYINV 268
>gi|348669793|gb|EGZ09615.1| hypothetical protein PHYSODRAFT_522103 [Phytophthora sojae]
Length = 216
Score = 100 bits (250), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 59/170 (34%), Positives = 91/170 (53%), Gaps = 5/170 (2%)
Query: 28 QNHAPPQPPAHDPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRK 86
++ AP PA E + V F V +N+ ++AL N +Y R + M+ ++
Sbjct: 15 EDDAPVWSPARLAEEGVAYR--VVGF-VNDKVNIEKLALLVRNADYAPRSFSALVMRFQE 71
Query: 87 PYTTASIWSSGKITCTGATSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPF 146
P T ++ SGK GATS D SK+AA + +++ F + + F V NV+G+ + F
Sbjct: 72 PRATVLVYRSGKFVVIGATSVDDSKLAADKLVSIFKKVSFPSDCSPFTVRNVVGSSDVGF 131
Query: 147 AIRILQFSEKH-RAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTACN 195
IR+ + H R + YEPE+ PG+ YR+ RPK TL IF +G I +T C
Sbjct: 132 RIRLEGLARDHLRFSTYEPEMFPGLIYRMLRPKCTLLIFISGKIVITGCE 181
>gi|7960166|gb|AAF71245.1| TA-TA binding protein 1 [Gallus gallus]
gi|7960168|gb|AAF71246.1| TA-TA binding protein 1 [Gallus gallus]
Length = 210
Score = 100 bits (248), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 44/91 (48%), Positives = 67/91 (73%), Gaps = 1/91 (1%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGA 104
+ N+V + ++ C L+L+ IAL N EY + V M++R+P TTA I+SSGK+ CTGA
Sbjct: 116 LQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 175
Query: 105 TSEDQSKIAARRYARCLQRLGFKARFTNFRV 135
SE+QS++AAR+YAR +Q+LGF A+F +F++
Sbjct: 176 KSEEQSRLAARKYARVVQKLGFPAKFLDFKI 206
>gi|374719192|gb|AEZ67282.1| TBP, partial [Eidolon helvum]
gi|374719194|gb|AEZ67283.1| TBP, partial [Myotis daubentonii]
gi|374719196|gb|AEZ67284.1| TBP, partial [Pipistrellus sp. DR-2011]
Length = 96
Score = 100 bits (248), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 46/91 (50%), Positives = 68/91 (74%), Gaps = 1/91 (1%)
Query: 61 LRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGATSEDQSKIAARRYAR 119
L+ IAL N EY + V M++R+P TTA I+SSGK+ CTGA SE+QS++AAR+YAR
Sbjct: 1 LKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKSEEQSRLAARKYAR 60
Query: 120 CLQRLGFKARFTNFRVVNVLGTCSMPFAIRI 150
+Q+LGF A+F +F++ N++G+C + F IR+
Sbjct: 61 VVQKLGFPAKFLDFKIQNMVGSCDVKFPIRL 91
>gi|341882085|gb|EGT38020.1| hypothetical protein CAEBREN_26270, partial [Caenorhabditis
brenneri]
Length = 414
Score = 100 bits (248), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 56/148 (37%), Positives = 83/148 (56%), Gaps = 15/148 (10%)
Query: 25 VPIQNHAPPQPPA-----------HDPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEY 73
VPI+ P PP D ++DI I NVVC++++ H++LR++A+N NV Y
Sbjct: 260 VPIKVEEPEVPPESTSTSQEEPLPEDGDIDIQIRNVVCNYTLPLHIDLRKLAMNTHNVTY 319
Query: 74 RRENGMVTMKLRKPYTTASIWSSGKITCTGATSEDQSKIAARRYARCLQRLGFKAR---- 129
RE G++ + R P ++SSGK+ G SE K AAR AR +QR+ K +
Sbjct: 320 EREKGVMMKQKRSPGCYIKVYSSGKVYIVGCRSEVDCKKAARSIARHVQRVMGKTKERVS 379
Query: 130 FTNFRVVNVLGTCSMPFAIRILQFSEKH 157
N+RV NVL TC +PF I+I + + K+
Sbjct: 380 IRNYRVNNVLATCRLPFGIKIEEGAAKY 407
>gi|8777987|gb|AAF79170.1| TATA-box binding protein [Brachionus plicatilis]
Length = 109
Score = 100 bits (248), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 47/102 (46%), Positives = 71/102 (69%), Gaps = 1/102 (0%)
Query: 57 CHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGATSEDQSKIAAR 115
C+L L++IAL N EY + V M++R P TTA I+SSGK+ CTGA SE+ S++AAR
Sbjct: 3 CNLELKKIALYARNAEYNPKRFAAVIMRIRSPRTTALIFSSGKMVCTGAKSEEDSRLAAR 62
Query: 116 RYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKH 157
+YAR +Q+LGF A+F +F++ N++G+ + F +R+ F H
Sbjct: 63 KYARIIQKLGFPAKFMDFKIQNIVGSIDVGFCLRLECFHTCH 104
>gi|171691522|ref|XP_001910686.1| hypothetical protein [Podospora anserina S mat+]
gi|170945709|emb|CAP71822.1| unnamed protein product [Podospora anserina S mat+]
Length = 223
Score = 99.8 bits (247), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 55/161 (34%), Positives = 93/161 (57%), Gaps = 12/161 (7%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGA 104
+ N V + ++ C ++L +A NVEYR R V M++R P TTA I+++G++ TGA
Sbjct: 31 LQNFVVTVNLDCRIDLNYLAQRARNVEYRPRRFNAVIMRIRDPRTTALIFATGRMVVTGA 90
Query: 105 TSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKH--RAAEY 162
SE +++AA+++ LQ+ GF +F +F V N++G+ ++ F IR+ + K+ A +
Sbjct: 91 KSEALARLAAKKHTYALQKCGFTPKFRDFTVQNIIGSANVGFNIRLEGLANKYVTVGASF 150
Query: 163 EPELHPGVTYR---------ITRPKATLKIFSTGGITVTAC 194
PE+ PG++++ R TL IF+TG I VT
Sbjct: 151 VPEIFPGLSFKQYLGYRADGTPRSCPTLLIFTTGKIVVTGA 191
>gi|8777983|gb|AAF79168.1| TATA-box binding protein 1 [Habrotrocha constricta]
Length = 108
Score = 97.4 bits (241), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 48/102 (47%), Positives = 68/102 (66%), Gaps = 1/102 (0%)
Query: 57 CHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGATSEDQSKIAAR 115
C L+L++IAL N EY + V M++R P TTA I+ SGK+ CTGA SE+ S AAR
Sbjct: 3 CPLDLKRIALQARNAEYNPKRFAAVIMRIRNPRTTALIFGSGKMVCTGAKSEEDSLQAAR 62
Query: 116 RYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKH 157
RYAR +Q+LGF A+F +F++ N++G+ + F IR+ KH
Sbjct: 63 RYARVIQKLGFPAKFRDFKIQNMVGSVDVKFPIRLEALVLKH 104
>gi|8777977|gb|AAF79165.1|AF249988_1 TATA-box binding protein 1 [Philodina roseola]
Length = 108
Score = 97.1 bits (240), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 48/102 (47%), Positives = 68/102 (66%), Gaps = 1/102 (0%)
Query: 57 CHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGATSEDQSKIAAR 115
C L+L++IAL N EY + V M++R P TTA I+ SGK+ CTGA SE+ S AAR
Sbjct: 3 CPLDLKRIALQARNAEYNPKRFAAVIMRIRSPRTTALIFGSGKMVCTGAKSENDSLQAAR 62
Query: 116 RYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKH 157
RYAR +Q+LGF A+F +F++ N++G+ + F IR+ KH
Sbjct: 63 RYARVIQKLGFPAKFRDFKIQNMVGSVDVKFPIRLEALVLKH 104
>gi|8777979|gb|AAF79166.1| TATA-box binding protein 2 [Macrotrachela quadricornifera]
gi|8777981|gb|AAF79167.1| TATA-box binding protein 2 [Philodina roseola]
Length = 108
Score = 96.7 bits (239), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 48/102 (47%), Positives = 68/102 (66%), Gaps = 1/102 (0%)
Query: 57 CHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGATSEDQSKIAAR 115
C L+L++IAL N EY + V M++R P TTA I+ SGK+ CTGA SE+ S AAR
Sbjct: 3 CPLDLKRIALQARNAEYNPKRFAAVIMRIRSPRTTALIFGSGKMVCTGAKSENXSLQAAR 62
Query: 116 RYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKH 157
RYAR +Q+LGF A+F +F++ N++G+ + F IR+ KH
Sbjct: 63 RYARVIQKLGFPAKFRDFKIQNMVGSVDVKFPIRLEALVLKH 104
>gi|295862233|gb|ADG54841.1| CG18009 [Drosophila melanogaster]
gi|295862245|gb|ADG54847.1| CG18009 [Drosophila melanogaster]
gi|295862247|gb|ADG54848.1| CG18009 [Drosophila melanogaster]
Length = 238
Score = 96.7 bits (239), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 46/74 (62%), Positives = 51/74 (68%), Gaps = 2/74 (2%)
Query: 14 SEQEPPPTQTVVPIQNHAPPQPPAHDPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEY 73
+E E + PI H P H E+DI+INNVVCSFSV CHL LR+IAL G NVEY
Sbjct: 167 AEDEEESSNNAKPIDLHQPIADNEH--ELDIVINNVVCSFSVGCHLKLREIALQGSNVEY 224
Query: 74 RRENGMVTMKLRKP 87
RRENGMVTMKLR P
Sbjct: 225 RRENGMVTMKLRHP 238
>gi|242247621|ref|NP_001156189.1| TATA-box-binding protein-like [Acyrthosiphon pisum]
gi|239791994|dbj|BAH72388.1| ACYPI005546 [Acyrthosiphon pisum]
Length = 331
Score = 96.3 bits (238), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 49/160 (30%), Positives = 89/160 (55%), Gaps = 4/160 (2%)
Query: 44 IIINNVVCSFSVRCHLNLRQIALNGVNVEYR--RENGMVTMKLRKPYTTASIWSSGKITC 101
I + N+VC ++ C L+L +I + N EY R NG++ M+LR P T+ ++ SGK+
Sbjct: 156 IQVQNIVCGANMGCPLDLVRIVMWTSNSEYNPLRFNGLI-MRLRTPNVTSLLFPSGKMIM 214
Query: 102 TGATSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKH-RAA 160
GA + + R+ A+ L+RLG +F+++ V N++ T + F I + + + H +
Sbjct: 215 QGAKDDRTGNLGCRKVAKILERLGHNVKFSDYTVHNIVCTWDVGFPIMLEELNTAHSQFT 274
Query: 161 EYEPELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
+EPE+ P + YR+ +P+A +F G + +T + I
Sbjct: 275 SFEPEVFPALIYRMVKPRAVFLMFVNGKVVLTGLKTKSDI 314
>gi|295862217|gb|ADG54833.1| CG18009 [Drosophila melanogaster]
gi|295862219|gb|ADG54834.1| CG18009 [Drosophila melanogaster]
gi|295862221|gb|ADG54835.1| CG18009 [Drosophila melanogaster]
gi|295862223|gb|ADG54836.1| CG18009 [Drosophila melanogaster]
gi|295862225|gb|ADG54837.1| CG18009 [Drosophila melanogaster]
gi|295862227|gb|ADG54838.1| CG18009 [Drosophila melanogaster]
gi|295862229|gb|ADG54839.1| CG18009 [Drosophila melanogaster]
gi|295862231|gb|ADG54840.1| CG18009 [Drosophila melanogaster]
gi|295862237|gb|ADG54843.1| CG18009 [Drosophila melanogaster]
gi|295862239|gb|ADG54844.1| CG18009 [Drosophila melanogaster]
gi|295862243|gb|ADG54846.1| CG18009 [Drosophila melanogaster]
gi|295862249|gb|ADG54849.1| CG18009 [Drosophila melanogaster]
gi|295862251|gb|ADG54850.1| CG18009 [Drosophila melanogaster]
gi|295862253|gb|ADG54851.1| CG18009 [Drosophila melanogaster]
gi|295862255|gb|ADG54852.1| CG18009 [Drosophila melanogaster]
Length = 238
Score = 96.3 bits (238), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 46/74 (62%), Positives = 51/74 (68%), Gaps = 2/74 (2%)
Query: 14 SEQEPPPTQTVVPIQNHAPPQPPAHDPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEY 73
+E E + PI H P H E+DI+INNVVCSFSV CHL LR+IAL G NVEY
Sbjct: 167 AEDEEESSNNAKPIDLHQPIADNEH--ELDIVINNVVCSFSVGCHLKLREIALQGSNVEY 224
Query: 74 RRENGMVTMKLRKP 87
RRENGMVTMKLR P
Sbjct: 225 RRENGMVTMKLRHP 238
>gi|301103642|ref|XP_002900907.1| TATA-box-binding protein, putative [Phytophthora infestans T30-4]
gi|262101662|gb|EEY59714.1| TATA-box-binding protein, putative [Phytophthora infestans T30-4]
Length = 163
Score = 95.9 bits (237), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 44/116 (37%), Positives = 72/116 (62%), Gaps = 4/116 (3%)
Query: 80 VTMKLRKPYTTASIWSSGKITCTGATSEDQSKIAARRYARCLQRLGF-KARFTNFRVVNV 138
+ MKL P TA ++++GK+ CTGA +ED K AARR+ + +Q++ F +F++ NV
Sbjct: 25 ILMKLHNPKATAMLFANGKLVCTGAETEDAIKNAARRFTQVIQKMDFPGVNLIDFKIQNV 84
Query: 139 LGTCSMPFAIRI--LQFSEKHRAAEYEPELHPGVTYRITRPKATLKIFSTGGITVT 192
+GTC M F + + L F+ R YEPEL+P + YR+ +P+ + +F +G + T
Sbjct: 85 VGTCDMGFRVLVEALAFAHSDRCT-YEPELYPALIYRLEKPQVKVLVFVSGKVVFT 139
>gi|403220982|dbj|BAM39115.1| transcription initiation factor [Theileria orientalis strain
Shintoku]
Length = 276
Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 53/165 (32%), Positives = 101/165 (61%), Gaps = 12/165 (7%)
Query: 45 IINNVVCSFSVRCHLNLRQIALNGVNVEY--RRENGMVTMKLRKPYTTASIWSSGKITCT 102
++ N+V S + L+LR+IA++ N EY ++ N +V ++++ P T I+ +G+I T
Sbjct: 99 MVQNIVASVHLGQELDLREIAISTRNAEYNPKKFNALV-LRMQNPKCTGLIFRTGRIIIT 157
Query: 103 GATSEDQSKIAARRYARCLQR-LGFKARFTNFRVVNVLGT--CSMPFAIRILQFSEKHRA 159
G+ + + +K+ A+R A+ +++ LG +F NF++ N++ T C++P IR+ FS++H+
Sbjct: 158 GSKTIEDTKLGAKRMAKMIRKELGADLKFNNFKIENIIATFNCNVP--IRLEVFSQEHKE 215
Query: 160 -AEYEPELHPGVTYRI---TRPKATLKIFSTGGITVTACNDSNKI 200
+ YEPE G+ YR +A L IF +G + +T C +++I
Sbjct: 216 LSNYEPEFFAGLVYRCRISESSEAVLLIFVSGNVIITGCKSAHEI 260
>gi|295862259|gb|ADG54854.1| CG18009 [Drosophila melanogaster]
Length = 233
Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 45/72 (62%), Positives = 50/72 (69%), Gaps = 2/72 (2%)
Query: 14 SEQEPPPTQTVVPIQNHAPPQPPAHDPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEY 73
+E E + PI H P H E+DI+INNVVCSFSV CHL LR+IAL G NVEY
Sbjct: 163 AEDEEESSNNAKPIDLHQPIADNEH--ELDIVINNVVCSFSVGCHLKLREIALQGSNVEY 220
Query: 74 RRENGMVTMKLR 85
RRENGMVTMKLR
Sbjct: 221 RRENGMVTMKLR 232
>gi|159152918|gb|ABW92967.1| TATA box binding protein-related factor 2 [Drosophila melanogaster]
gi|159152920|gb|ABW92968.1| TATA box binding protein-related factor 2 [Drosophila melanogaster]
gi|159152922|gb|ABW92969.1| TATA box binding protein-related factor 2 [Drosophila melanogaster]
gi|159152924|gb|ABW92970.1| TATA box binding protein-related factor 2 [Drosophila melanogaster]
gi|159152926|gb|ABW92971.1| TATA box binding protein-related factor 2 [Drosophila melanogaster]
gi|159152928|gb|ABW92972.1| TATA box binding protein-related factor 2 [Drosophila melanogaster]
gi|159152930|gb|ABW92973.1| TATA box binding protein-related factor 2 [Drosophila melanogaster]
gi|159152932|gb|ABW92974.1| TATA box binding protein-related factor 2 [Drosophila melanogaster]
gi|159152934|gb|ABW92975.1| TATA box binding protein-related factor 2 [Drosophila melanogaster]
gi|159152936|gb|ABW92976.1| TATA box binding protein-related factor 2 [Drosophila melanogaster]
gi|159152938|gb|ABW92977.1| TATA box binding protein-related factor 2 [Drosophila melanogaster]
gi|159152940|gb|ABW92978.1| TATA box binding protein-related factor 2 [Drosophila melanogaster]
gi|295862257|gb|ADG54853.1| CG18009 [Drosophila melanogaster]
gi|295862261|gb|ADG54855.1| CG18009 [Drosophila melanogaster]
gi|295862263|gb|ADG54856.1| CG18009 [Drosophila melanogaster]
gi|295862265|gb|ADG54857.1| CG18009 [Drosophila melanogaster]
gi|295862267|gb|ADG54858.1| CG18009 [Drosophila melanogaster]
gi|295862269|gb|ADG54859.1| CG18009 [Drosophila melanogaster]
gi|295862271|gb|ADG54860.1| CG18009 [Drosophila melanogaster]
gi|295862273|gb|ADG54861.1| CG18009 [Drosophila melanogaster]
gi|295862275|gb|ADG54862.1| CG18009 [Drosophila melanogaster]
gi|295862277|gb|ADG54863.1| CG18009 [Drosophila melanogaster]
gi|295862279|gb|ADG54864.1| CG18009 [Drosophila melanogaster]
gi|295862281|gb|ADG54865.1| CG18009 [Drosophila melanogaster]
Length = 233
Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 45/72 (62%), Positives = 50/72 (69%), Gaps = 2/72 (2%)
Query: 14 SEQEPPPTQTVVPIQNHAPPQPPAHDPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEY 73
+E E + PI H P H E+DI+INNVVCSFSV CHL LR+IAL G NVEY
Sbjct: 163 AEDEEESSNNAKPIDLHQPIADNEH--ELDIVINNVVCSFSVGCHLKLREIALQGSNVEY 220
Query: 74 RRENGMVTMKLR 85
RRENGMVTMKLR
Sbjct: 221 RRENGMVTMKLR 232
>gi|8777975|gb|AAF79164.1|AF249987_1 TATA-box binding protein 1 [Macrotrachela quadricornifera]
Length = 108
Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 48/102 (47%), Positives = 67/102 (65%), Gaps = 1/102 (0%)
Query: 57 CHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGATSEDQSKIAAR 115
C L+L++IAL N EY + V M +R P TTA I+ SGK+ CTGA SE+ S AAR
Sbjct: 3 CPLDLKRIALQARNAEYNPKRFAAVIMCIRSPRTTALIFGSGKMVCTGAKSENDSLQAAR 62
Query: 116 RYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKH 157
RYAR +Q+LGF A+F +F++ N++G+ + F IR+ KH
Sbjct: 63 RYARVIQKLGFPAKFRDFKIQNMVGSVDVKFPIRLEALVLKH 104
>gi|390986539|gb|AFM35789.1| hypothetical protein, partial [Oryza eichingeri]
Length = 88
Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 41/80 (51%), Positives = 61/80 (76%)
Query: 80 VTMKLRKPYTTASIWSSGKITCTGATSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVL 139
V M++R+P TTA I++SGK+ CTGA SED SK+AAR+YAR +Q+LGF A+F +F++ N++
Sbjct: 5 VIMRIREPKTTALIFASGKMVCTGAKSEDHSKLAARKYARIVQKLGFPAKFKDFKIQNIV 64
Query: 140 GTCSMPFAIRILQFSEKHRA 159
G+C + F IR+ + H A
Sbjct: 65 GSCDVKFPIRLEGLAYSHGA 84
>gi|394774083|gb|AFN37232.1| TATA-box binding protein [Aphis glycines]
Length = 149
Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 51/111 (45%), Positives = 73/111 (65%), Gaps = 7/111 (6%)
Query: 27 IQNHAPPQP-----PAH-DPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGM 79
IQN A P P PA DP V + N+V + ++ C L+L+ IAL+ N E+ +
Sbjct: 39 IQNPATPAPMTPMTPASADPGVVPQLQNIVSTVNLGCRLDLKTIALHARNAEFNPKRFAA 98
Query: 80 VTMKLRKPYTTASIWSSGKITCTGATSEDQSKIAARRYARCLQRLGFKARF 130
V M++R+P TTA I+SSGK+ CTGA SE+ S++AAR+YAR +Q+L F A+F
Sbjct: 99 VIMRIREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLSFPAKF 149
>gi|328705141|ref|XP_001943046.2| PREDICTED: TATA box-binding protein-like protein 2-like
[Acyrthosiphon pisum]
Length = 343
Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 48/153 (31%), Positives = 87/153 (56%), Gaps = 4/153 (2%)
Query: 44 IIINNVVCSFSVRCHLNLRQIALNGVNVEY--RRENGMVTMKLRKPYTTASIWSSGKITC 101
I + N+VC ++ C L+L +I + N EY +R NG++ M+LR P T+ ++ SGK+
Sbjct: 168 IQVQNIVCGANMGCPLDLVRIVMWTSNSEYNPQRFNGLI-MRLRTPNVTSLLFPSGKMIM 226
Query: 102 TGATSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKH-RAA 160
GA + + R+ A+ L+RLG +F ++ V N++ T + F I + + + H +
Sbjct: 227 QGAKDDRTGNLGCRKVAKILERLGHNVQFCDYTVHNIVCTWDVGFPIMLEELNTAHSQFT 286
Query: 161 EYEPELHPGVTYRITRPKATLKIFSTGGITVTA 193
+EPE+ P + YR+ +P+A +F G + +T
Sbjct: 287 SFEPEVFPALIYRMVKPRAVFLMFVNGKVVLTG 319
>gi|281344600|gb|EFB20184.1| hypothetical protein PANDA_019435 [Ailuropoda melanoleuca]
Length = 89
Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 41/89 (46%), Positives = 64/89 (71%), Gaps = 1/89 (1%)
Query: 106 SEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKHRA-AEYEP 164
SE+QS++AAR+YAR +Q+LGF ARF +F++ N++G+C + FAIR+ H+ + YEP
Sbjct: 1 SEEQSRLAARKYARVVQKLGFPARFLDFKIQNMVGSCDVRFAIRLEGLVLTHQQFSSYEP 60
Query: 165 ELHPGVTYRITRPKATLKIFSTGGITVTA 193
EL PG+ YR+ +P+ L IF +G + +T
Sbjct: 61 ELFPGLIYRMVKPRIVLLIFVSGKVVLTG 89
>gi|295862235|gb|ADG54842.1| CG18009 [Drosophila melanogaster]
gi|295862241|gb|ADG54845.1| CG18009 [Drosophila melanogaster]
Length = 237
Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 45/72 (62%), Positives = 50/72 (69%), Gaps = 2/72 (2%)
Query: 14 SEQEPPPTQTVVPIQNHAPPQPPAHDPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEY 73
+E E + PI H P H E+DI+INNVVCSFSV CHL LR+IAL G NVEY
Sbjct: 167 AEDEEESSNNAKPIDLHQPIADNEH--ELDIVINNVVCSFSVGCHLKLREIALQGSNVEY 224
Query: 74 RRENGMVTMKLR 85
RRENGMVTMKLR
Sbjct: 225 RRENGMVTMKLR 236
>gi|84998870|ref|XP_954156.1| transcription initiation factor (TBP ) [Theileria annulata]
gi|65305154|emb|CAI73479.1| transcription initiation factor (TBP homologue), putative
[Theileria annulata]
Length = 222
Score = 94.0 bits (232), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 51/163 (31%), Positives = 93/163 (57%), Gaps = 8/163 (4%)
Query: 45 IINNVVCSFSVRCHLNLRQIALNGVNVEY--RRENGMVTMKLRKPYTTASIWSSGKITCT 102
++ N+V S + L+LR+IA++ N EY R+ N +V ++++ P T I+ +G+I T
Sbjct: 45 VVQNIVASVHLGEELDLREIAISTRNAEYNPRKFNALV-LRMQNPKCTGLIFRTGRIIIT 103
Query: 103 GATSEDQSKIAARRYARCLQR-LGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKHR-AA 160
G+ + + +K+ +R A+ +++ G +F NF++ N++ T S IR+ FS++H+
Sbjct: 104 GSKTIEDAKLGGKRMAKMIRKETGLDLKFNNFKIENIIATFSCNVPIRLEVFSQEHKDLC 163
Query: 161 EYEPELHPGVTYRI---TRPKATLKIFSTGGITVTACNDSNKI 200
YEPE G+ YR +A L IF +G + +T C +I
Sbjct: 164 NYEPEFFAGLVYRCRINEESEAVLLIFVSGNVIITGCKSPQEI 206
>gi|410989830|ref|XP_004001158.1| PREDICTED: TATA box-binding protein-like protein 2-like [Felis
catus]
Length = 135
Score = 93.6 bits (231), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 40/95 (42%), Positives = 66/95 (69%), Gaps = 1/95 (1%)
Query: 107 EDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKHRA-AEYEPE 165
E+QS++AAR+YAR +Q+LGF ARF +F++ N++G+C + F IR+ H+ + YEPE
Sbjct: 24 EEQSRLAARKYARVVQKLGFPARFLDFKIQNMVGSCDVRFPIRLEGLVLTHQQFSSYEPE 83
Query: 166 LHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
L PG+ YR+ +P+ L IF +G + +T + ++I
Sbjct: 84 LFPGLIYRMVKPRIVLLIFVSGKVVLTGAKERSEI 118
>gi|301113196|ref|XP_002998368.1| TATA-box-binding protein [Phytophthora infestans T30-4]
gi|262111669|gb|EEY69721.1| TATA-box-binding protein [Phytophthora infestans T30-4]
Length = 220
Score = 92.8 bits (229), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 49/145 (33%), Positives = 82/145 (56%), Gaps = 2/145 (1%)
Query: 55 VRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGATSEDQSKIA 113
V ++++++AL N +Y R + M+ + P T ++ SGK GATS +K+A
Sbjct: 36 VNDRVDIKKLALLVRNADYAPRGFSALVMRFQAPRATVLLYRSGKFVVIGATSVADAKLA 95
Query: 114 ARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKH-RAAEYEPELHPGVTY 172
A + L+++ F + + F + NV+G+ + F +R+ + H R + YEPEL PG+ Y
Sbjct: 96 AEKLVSILKKVSFPSDNSPFTIRNVVGSADVCFRVRLEGLARDHLRFSTYEPELFPGLIY 155
Query: 173 RITRPKATLKIFSTGGITVTACNDS 197
R+ RPK TL IF +G + +T C S
Sbjct: 156 RMLRPKCTLLIFISGKLVITGCESS 180
>gi|71033019|ref|XP_766151.1| transcription initiation factor TFIID [Theileria parva strain
Muguga]
gi|68353108|gb|EAN33868.1| transcription initiation factor TFIID, putative [Theileria parva]
Length = 222
Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 49/163 (30%), Positives = 94/163 (57%), Gaps = 8/163 (4%)
Query: 45 IINNVVCSFSVRCHLNLRQIALNGVNVEY--RRENGMVTMKLRKPYTTASIWSSGKITCT 102
++ N+V S + L+LR+IA++ N EY ++ N +V ++++ P T I+ +G+I T
Sbjct: 45 MVQNIVASVHLGEELDLREIAISTRNAEYNPKKFNALV-LRMQNPKCTGLIFRTGRIIIT 103
Query: 103 GATSEDQSKIAARRYARCLQR-LGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKHR-AA 160
G+ + + +++ +R A+ +++ G +F NF++ N++ T S IR+ FS++H+
Sbjct: 104 GSKTIEDTRLGGKRMAKMIRKETGLDLKFNNFKIENIIATFSCNVPIRLEVFSQEHKDLC 163
Query: 161 EYEPELHPGVTYRI---TRPKATLKIFSTGGITVTACNDSNKI 200
YEPE G+ YR +A L IF +G + +T C + +I
Sbjct: 164 NYEPEFFAGLVYRCRINEESEAVLLIFVSGNVIITGCKSAQEI 206
>gi|444728636|gb|ELW69085.1| TATA-box-binding protein [Tupaia chinensis]
Length = 313
Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 39/95 (41%), Positives = 64/95 (67%), Gaps = 1/95 (1%)
Query: 107 EDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKHRA-AEYEPE 165
E+QS++AAR+YAR +Q+LGF A+F +F++ N++G+C + F IR+ H+ + YEPE
Sbjct: 201 EEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSYEPE 260
Query: 166 LHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
L PG+ YR+ +P+ L IF +G + +T +I
Sbjct: 261 LFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRAEI 295
>gi|148642780|ref|YP_001273293.1| transcription factor [Methanobrevibacter smithii ATCC 35061]
gi|222445725|ref|ZP_03608240.1| hypothetical protein METSMIALI_01367 [Methanobrevibacter smithii
DSM 2375]
gi|261349727|ref|ZP_05975144.1| TATA-box-binding protein [Methanobrevibacter smithii DSM 2374]
gi|166227821|sp|A5UL47.1|TBP_METS3 RecName: Full=TATA-box-binding protein; AltName: Full=Box A-binding
protein; Short=BAP; AltName: Full=TATA sequence-binding
protein; Short=TBP; AltName: Full=TATA-box factor
gi|148551797|gb|ABQ86925.1| transcription initiation factor TFIID TATA binding protein
[Methanobrevibacter smithii ATCC 35061]
gi|222435290|gb|EEE42455.1| transcription factor [Methanobrevibacter smithii DSM 2375]
gi|288861682|gb|EFC93980.1| TATA-box-binding protein [Methanobrevibacter smithii DSM 2374]
Length = 181
Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 52/158 (32%), Positives = 87/158 (55%), Gaps = 6/158 (3%)
Query: 41 EVDIIINNVVCSFSVRCHLNLRQI--ALNGVNVEYRRENGMVTMKLRKPYTTASIWSSGK 98
+VDI I N+V S S+ + L ++ AL GVN + G+V KL+ P T A I+SSGK
Sbjct: 3 DVDIKIENIVASASIGKDIVLTEVSEALEGVNFNREQFPGLV-FKLKDPKTAALIFSSGK 61
Query: 99 ITCTGATSEDQSKIAARRYARCLQRLGFKA--RFTNFRVVNVLGTCSMPFAIRILQFSEK 156
+ CTGA S D SK+A ++ ++ + + F ++ N++ + ++ + + + +
Sbjct: 62 LVCTGAKSIDDSKLAIKKTVDLMRTIDTEIPHEF-EIKIQNIVASANLESTLNLEAVALE 120
Query: 157 HRAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTAC 194
EYEPE PG+ YR++ PK L +F +G + T
Sbjct: 121 LEDTEYEPEQFPGLVYRLSDPKVVLLLFGSGKVVCTGA 158
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 43/88 (48%), Gaps = 3/88 (3%)
Query: 41 EVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYRREN--GMVTMKLRKPYTTASIWSSGK 98
E +I I N+V S ++ LNL +AL + EY E G+V +L P ++ SGK
Sbjct: 94 EFEIKIQNIVASANLESTLNLEAVALELEDTEYEPEQFPGLV-YRLSDPKVVLLLFGSGK 152
Query: 99 ITCTGATSEDQSKIAARRYARCLQRLGF 126
+ CTGA + +K+ R L L
Sbjct: 153 VVCTGAKTRSDAKLGVERAYDRLSELDL 180
>gi|288559645|ref|YP_003423131.1| TATA-box binding protein Tbp [Methanobrevibacter ruminantium M1]
gi|288542355|gb|ADC46239.1| TATA-box binding protein Tbp [Methanobrevibacter ruminantium M1]
Length = 181
Score = 90.9 bits (224), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 51/158 (32%), Positives = 88/158 (55%), Gaps = 6/158 (3%)
Query: 41 EVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYRREN--GMVTMKLRKPYTTASIWSSGK 98
+VDI I N+V S S+ + L ++A V++ RE G+V KL+ P T A I+SSGK
Sbjct: 3 DVDIKIENIVASASIGKDIVLTEVAKALEGVDFNREQFPGLV-FKLQDPKTAALIFSSGK 61
Query: 99 ITCTGATSEDQSKIAARRYARCLQRLGFKA--RFTNFRVVNVLGTCSMPFAIRILQFSEK 156
+ CTGA S D SK+A ++ ++ + + F + ++ N++ + ++ + + + +
Sbjct: 62 LVCTGAKSIDDSKLAIKKTVDLMRTIDTEIPHEF-DIKIQNIVASANLQSTLNLEAVALE 120
Query: 157 HRAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTAC 194
EYEPE PG+ YR++ PK L +F +G + T
Sbjct: 121 LENTEYEPEQFPGLVYRLSDPKVVLLLFGSGKVVCTGA 158
Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 44/88 (50%), Gaps = 3/88 (3%)
Query: 41 EVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYRREN--GMVTMKLRKPYTTASIWSSGK 98
E DI I N+V S +++ LNL +AL N EY E G+V +L P ++ SGK
Sbjct: 94 EFDIKIQNIVASANLQSTLNLEAVALELENTEYEPEQFPGLV-YRLSDPKVVLLLFGSGK 152
Query: 99 ITCTGATSEDQSKIAARRYARCLQRLGF 126
+ CTGA ++ +++ L L
Sbjct: 153 VVCTGAKTKQDARLGVENAKARLSELDL 180
>gi|392522721|gb|AFM78149.1| TATA box-binding protein, partial [uncultured diatom]
Length = 114
Score = 90.1 bits (222), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 46/112 (41%), Positives = 68/112 (60%), Gaps = 2/112 (1%)
Query: 75 RENGMVTMKLRKPYTTASIWSSGKITCTGATSEDQSKIAARRYARCLQRLGFK-ARFTNF 133
R V M+LR+P TA I+SSG++ TG S S +A R++A L+R+GF+ A +F
Sbjct: 1 RRFAAVIMRLREPRATALIFSSGRMVVTGTKSTHNSALATRKFAYILERVGFQPAGMLDF 60
Query: 134 RVVNVLGTCSMPFAIRILQFSEKH-RAAEYEPELHPGVTYRITRPKATLKIF 184
+V N++GT + F IR+ H + YEPEL PG+ YR+ +P+ L IF
Sbjct: 61 KVQNIVGTVDVGFPIRLEGLVFAHPTFSSYEPELFPGLIYRLVQPRVVLLIF 112
>gi|392522723|gb|AFM78150.1| TATA box-binding protein, partial [uncultured diatom]
Length = 114
Score = 90.1 bits (222), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 46/112 (41%), Positives = 68/112 (60%), Gaps = 2/112 (1%)
Query: 75 RENGMVTMKLRKPYTTASIWSSGKITCTGATSEDQSKIAARRYARCLQRLGFK-ARFTNF 133
R V M+LR+P TA I+SSG++ TG S S +A R++A L+R+GF+ A +F
Sbjct: 1 RRFAAVIMRLREPRATALIFSSGRMVVTGTKSTHNSALATRKFAYILERVGFQLAGMLDF 60
Query: 134 RVVNVLGTCSMPFAIRILQFSEKH-RAAEYEPELHPGVTYRITRPKATLKIF 184
+V N++GT + F IR+ H + YEPEL PG+ YR+ +P+ L IF
Sbjct: 61 KVQNIVGTVDVGFPIRLEGLVFAHPTFSSYEPELFPGLIYRLVQPRVVLLIF 112
>gi|156083957|ref|XP_001609462.1| TATA-box binding protein [Babesia bovis T2Bo]
gi|154796713|gb|EDO05894.1| TATA-box binding protein [Babesia bovis]
Length = 277
Score = 90.1 bits (222), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 47/157 (29%), Positives = 94/157 (59%), Gaps = 8/157 (5%)
Query: 45 IINNVVCSFSVRCHLNLRQIALNGVNVEY--RRENGMVTMKLRKPYTTASIWSSGKITCT 102
++ N+V S + ++LR+IA++ N EY R+ N ++ ++++ P T ++ +G++ T
Sbjct: 100 VVQNIVASVHLGNEIDLREIAISTRNAEYNPRKFNALI-LRMQNPRCTGLVFRTGRLIVT 158
Query: 103 GATSEDQSKIAARRYARCLQR-LGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKHRA-A 160
G + + +++ A+R A+ ++R LG +F +F++ N++ T + IR+ + E+H+
Sbjct: 159 GCKTVESARLGAKRIAKMVRRELGGGIQFNDFKIENIIATFNCNVPIRLERLYEEHKLFC 218
Query: 161 EYEPELHPGVTYRITRP---KATLKIFSTGGITVTAC 194
YEPE+ G+ YRI P +A L +F +G + VT C
Sbjct: 219 NYEPEIFAGLVYRIAIPCKSEAVLLVFVSGNVIVTGC 255
>gi|432963770|ref|XP_004086828.1| PREDICTED: TATA-box-binding protein-like [Oryzias latipes]
Length = 237
Score = 90.1 bits (222), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 52/131 (39%), Positives = 78/131 (59%), Gaps = 5/131 (3%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEY--RRENGMVTMKLRKPYTTASIWSSGKITCTG 103
I NVV + C L+L I N +Y + G++ M++RKP TTA+I+S+GK+ CT
Sbjct: 93 IKNVVSVVDLGCRLDLGAIGKALWNTQYNPKTYTGLI-MRIRKPRTTANIYSTGKMICTA 151
Query: 104 ATSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKH-RAAEY 162
A S ++S+ AARR+AR LQ+ GF RF NFRV+N + F + + + + + +
Sbjct: 152 ACSIEESRQAARRHARILQKAGFPVRFLNFRVINCVCMVKT-FCLNLEGLTRSNPQGFSF 210
Query: 163 EPELHPGVTYR 173
EPEL+P V R
Sbjct: 211 EPELNPAVFLR 221
>gi|392522725|gb|AFM78151.1| TATA box-binding protein, partial [uncultured diatom]
Length = 114
Score = 89.4 bits (220), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 45/112 (40%), Positives = 69/112 (61%), Gaps = 2/112 (1%)
Query: 75 RENGMVTMKLRKPYTTASIWSSGKITCTGATSEDQSKIAARRYARCLQRLGFK-ARFTNF 133
R V M+LR+P TA +++SGKI TG S S +A ++ A L+R+GF+ + + NF
Sbjct: 1 RRFAAVIMRLREPRATALVFASGKIVITGTKSSHNSGLATKKIAYILERVGFRPSSYINF 60
Query: 134 RVVNVLGTCSMPFAIRILQFSEKH-RAAEYEPELHPGVTYRITRPKATLKIF 184
+V N++GT + F IR+ + H + YEPEL PG+ YR+ +P+ L IF
Sbjct: 61 KVQNIVGTVDVGFPIRLEGVAFAHPTFSSYEPELFPGLIYRLGQPRVVLLIF 112
>gi|348686462|gb|EGZ26277.1| hypothetical protein PHYSODRAFT_484921 [Phytophthora sojae]
Length = 161
Score = 89.4 bits (220), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 69/115 (60%), Gaps = 2/115 (1%)
Query: 80 VTMKLRKPYTTASIWSSGKITCTGATSEDQSKIAARRYARCLQRLGF-KARFTNFRVVNV 138
+ MKL P TA ++++GK+ CTGA +E+ K ARR+ + +Q++ F +F++ NV
Sbjct: 25 ILMKLHNPKATAMLFANGKLVCTGAETEEAIKNVARRFTQVIQKMDFPGVNLIDFKIQNV 84
Query: 139 LGTCSMPFAIRILQFSEKH-RAAEYEPELHPGVTYRITRPKATLKIFSTGGITVT 192
+GTC + F + + + H YEPEL+P + YR+ +P+ + +F +G + T
Sbjct: 85 VGTCDLGFRVLVEAIAFAHSDCCTYEPELYPALIYRLDKPQVKVLVFVSGKVVFT 139
>gi|392522653|gb|AFM78115.1| TATA box-binding protein, partial [Skeletonema costatum]
Length = 114
Score = 89.4 bits (220), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 45/112 (40%), Positives = 68/112 (60%), Gaps = 2/112 (1%)
Query: 75 RENGMVTMKLRKPYTTASIWSSGKITCTGATSEDQSKIAARRYARCLQRLGFK-ARFTNF 133
R V M+LR+P TA I++SG++ TG S S +A R++A L+R+GF+ A +F
Sbjct: 1 RRFAAVIMRLREPRATALIFASGRMVVTGTKSTHNSALATRKFAYILERVGFQPAGMLDF 60
Query: 134 RVVNVLGTCSMPFAIRILQFSEKH-RAAEYEPELHPGVTYRITRPKATLKIF 184
+V N++GT + F IR+ H + YEPEL PG+ YR+ +P+ L IF
Sbjct: 61 KVQNIVGTVDVGFPIRLEGLVYAHPTFSSYEPELFPGLIYRLVQPRVVLLIF 112
>gi|145509947|ref|XP_001440912.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124408140|emb|CAK73515.1| unnamed protein product [Paramecium tetraurelia]
Length = 201
Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 60/154 (38%), Positives = 82/154 (53%), Gaps = 13/154 (8%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGA 104
I NVV + + LNL I+ EY + V M+L P TTA I+ SGK+ CTGA
Sbjct: 27 IQNVVSTVDLGTELNLVVISNGARMAEYNPKRFSAVIMRLSNPSTTALIFQSGKMVCTGA 86
Query: 105 TSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTC---SMPFAIRILQFSEKHRAAE 161
SEDQS IAAR+YA+ + +LGF VV +L S +L+ + +
Sbjct: 87 KSEDQSLIAARKYAKIINKLGFP-------VVTLLQASTSESQSNQTNLLKDQQYRSVVQ 139
Query: 162 YEPELHPGVTYR-IT-RPKATLKIFSTGGITVTA 193
YEPE+ PG+ +R IT + K TL IF +G +T
Sbjct: 140 YEPEIFPGLIFRKITDQKKITLLIFVSGRCVITG 173
Score = 36.2 bits (82), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 31/66 (46%)
Query: 134 RVVNVLGTCSMPFAIRILQFSEKHRAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTA 193
++ NV+ T + + ++ S R AEY P+ V R++ P T IF +G + T
Sbjct: 26 KIQNVVSTVDLGTELNLVVISNGARMAEYNPKRFSAVIMRLSNPSTTALIFQSGKMVCTG 85
Query: 194 CNDSNK 199
++
Sbjct: 86 AKSEDQ 91
>gi|392522763|gb|AFM78170.1| TATA box-binding protein, partial [uncultured diatom]
Length = 113
Score = 88.6 bits (218), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 43/111 (38%), Positives = 67/111 (60%), Gaps = 1/111 (0%)
Query: 75 RENGMVTMKLRKPYTTASIWSSGKITCTGATSEDQSKIAARRYARCLQRLGFKARFTNFR 134
R V M+LR+P TA I++SGK+ TG S S +AA+R+A ++++GFK+ +F+
Sbjct: 1 RRFAAVIMRLREPRATALIFASGKMCVTGTKSTHNSSLAAKRFAYIIEKVGFKSTGLDFK 60
Query: 135 VVNVLGTCSMPFAIRILQFSEKHRA-AEYEPELHPGVTYRITRPKATLKIF 184
V N++GT + F +R+ H + YEPEL PG+ YR+ P+ IF
Sbjct: 61 VQNIVGTVDVGFPVRLEGLVYAHSMYSSYEPELFPGLIYRLGIPRVVFLIF 111
>gi|392522731|gb|AFM78154.1| TATA box-binding protein, partial [uncultured diatom]
Length = 114
Score = 88.6 bits (218), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 45/112 (40%), Positives = 68/112 (60%), Gaps = 2/112 (1%)
Query: 75 RENGMVTMKLRKPYTTASIWSSGKITCTGATSEDQSKIAARRYARCLQRLGFK-ARFTNF 133
R V M+LR+P TA +++SGK TG S S +A ++ A L+R+GF+ A + NF
Sbjct: 1 RRFAAVIMRLREPRATALVFASGKTVITGTKSSHNSSLATKKIAYILERIGFQPASYINF 60
Query: 134 RVVNVLGTCSMPFAIRILQFSEKH-RAAEYEPELHPGVTYRITRPKATLKIF 184
+V N++GT + F IR+ + H + YEPEL PG+ YR+ +P+ L IF
Sbjct: 61 KVQNIVGTVDVGFPIRLEGVAFAHPTFSSYEPELFPGLIYRLVQPRVCLLIF 112
>gi|123395858|ref|XP_001300812.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121881909|gb|EAX87882.1| hypothetical protein TVAG_285070 [Trichomonas vaginalis G3]
Length = 233
Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 50/156 (32%), Positives = 86/156 (55%), Gaps = 5/156 (3%)
Query: 48 NVVCSFSVRCH-LNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGAT 105
NV+ C+ LNL IA N EY+ + V +++R P T ++S+GKI G
Sbjct: 53 NVIALAQYSCNKLNLVSIASTIRNAEYKPKRIKAVVIRIRDPKATGLVFSNGKINIVGCR 112
Query: 106 SEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQF--SEKHRA-AEY 162
S + +K AA ++ + LQ++G+ + N + +++ T PF I I Q ++ H+ +Y
Sbjct: 113 SVEDAKRAAHKFRKMLQQIGYDVKLVNITISSIVATIHTPFNIAIAQIASADGHKLFCQY 172
Query: 163 EPELHPGVTYRITRPKATLKIFSTGGITVTACNDSN 198
PE G+ YR+T P+ T+ IF +G I +TA ++ +
Sbjct: 173 RPEKFAGLIYRLTDPQCTMLIFQSGSIVLTAKSEDD 208
>gi|326431087|gb|EGD76657.1| TATA box binding protein [Salpingoeca sp. ATCC 50818]
Length = 166
Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 49/152 (32%), Positives = 82/152 (53%), Gaps = 2/152 (1%)
Query: 45 IINNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTG 103
I+N V + R L L +IA N EY + + M++++P TA I+S+GK+ G
Sbjct: 14 IVNIVATAHLSRTQLKLEEIAEKAKNSEYNPKRYSAIIMRIKEPSATALIFSTGKVVIMG 73
Query: 104 ATSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKHRA-AEY 162
A SE+ + AAR++A+ + + G + ++ NV+G + F + + +H A + Y
Sbjct: 74 AKSEEAAHAAARQFAQNITKAGTRVSLREIKIHNVVGRVDIGFKLHLDNLHVEHPAWSTY 133
Query: 163 EPELHPGVTYRITRPKATLKIFSTGGITVTAC 194
+PE PG+TYR+ P L IF +G I +T
Sbjct: 134 DPESFPGLTYRMQEPDVVLLIFHSGKIVLTKA 165
>gi|193875778|gb|ACF24525.1| TATA binding protein of TFIID [Gymnochlora stellata]
Length = 162
Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 49/147 (33%), Positives = 85/147 (57%), Gaps = 7/147 (4%)
Query: 59 LNLRQIALNGVNVEY--RRENGMVTMKLRKPYTTASIWSSGKITCTGATSEDQSKIAARR 116
L+L+++AL N EY +R + ++ ++ R P TA I+ SGK+ CTG +E ++K A+ +
Sbjct: 1 LDLKKVALKAKNSEYNPKRFHALI-LRSRDPKATALIFKSGKMVCTGTKTETEAKEASLK 59
Query: 117 YARCLQRLGF-KARFTNFRVVNVLGTCSM--PFAIRILQFSEKHRAAEYEPELHPGVTYR 173
+ + +++ GF KA N+ V NV+ TC P + + F + + YEPE+ PG+ +R
Sbjct: 60 FLKVIKQAGFTKAMLKNYSVRNVVATCDYRSPINLDPIFFGYRDQCM-YEPEIFPGLLFR 118
Query: 174 ITRPKATLKIFSTGGITVTACNDSNKI 200
+ K + FS+G I +T N K+
Sbjct: 119 PNKAKIVVIFFSSGKIVITGVNSMEKL 145
>gi|392522761|gb|AFM78169.1| TATA box-binding protein, partial [uncultured diatom]
Length = 113
Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 43/111 (38%), Positives = 67/111 (60%), Gaps = 1/111 (0%)
Query: 75 RENGMVTMKLRKPYTTASIWSSGKITCTGATSEDQSKIAARRYARCLQRLGFKARFTNFR 134
R V M+LR+P TA I++SGK+ TG S S +AA+R+A ++++GFK+ +F+
Sbjct: 1 RRFAAVIMRLREPRATALIFASGKMCVTGTKSTHNSSLAAKRFAYIIEKVGFKSTGLDFK 60
Query: 135 VVNVLGTCSMPFAIRILQFSEKHRA-AEYEPELHPGVTYRITRPKATLKIF 184
V N++GT + F +R+ H + YEPEL PG+ YR+ P+ IF
Sbjct: 61 VQNMVGTVDVGFPVRLEGLVYAHSMYSSYEPELFPGLIYRLGIPRVVFLIF 111
>gi|392522767|gb|AFM78172.1| TATA box-binding protein, partial [uncultured diatom]
Length = 114
Score = 87.8 bits (216), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 44/112 (39%), Positives = 70/112 (62%), Gaps = 2/112 (1%)
Query: 75 RENGMVTMKLRKPYTTASIWSSGKITCTGATSEDQSKIAARRYARCLQRLGFK-ARFTNF 133
R VTM+LR+P TA I++SGK+ TG S + +A++++A ++++GFK A +F
Sbjct: 1 RRFAAVTMRLREPRATALIFASGKMCATGTKSTHNASLASKKFALIIEKVGFKTAPEVDF 60
Query: 134 RVVNVLGTCSMPFAIRILQFSEKHRA-AEYEPELHPGVTYRITRPKATLKIF 184
+V N++GT + F IR+ H A YEPEL PG+ YR+ +P+ + IF
Sbjct: 61 KVQNIVGTADVGFPIRLEGLVYAHSTFASYEPELFPGLIYRLVQPRVVILIF 112
>gi|294939318|ref|XP_002782410.1| TATA-binding protein, putative [Perkinsus marinus ATCC 50983]
gi|239894016|gb|EER14205.1| TATA-binding protein, putative [Perkinsus marinus ATCC 50983]
Length = 273
Score = 87.4 bits (215), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 49/146 (33%), Positives = 87/146 (59%), Gaps = 4/146 (2%)
Query: 59 LNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGATSEDQSKIAARRY 117
++L+++A N EY R+ V ++ R P TA ++ +GK+ TG+ SE+ +K AA++
Sbjct: 112 IDLKKVAFKARNAEYNPRKVNAVVIRFRDPKATAMLYGTGKVMVTGSNSEETAKDAAKKV 171
Query: 118 ARCLQRLGF--KARFTNFRVVNVLGTCSMPFAIRILQFSEKHRA-AEYEPELHPGVTYRI 174
A+ + + G +ARF F++ N++ + + F IR+ + +HR+ YEPEL+PG+ +R+
Sbjct: 172 AKIVIKSGAYPQARFRRFKIENMVASADVRFPIRLEALAYEHRSYCSYEPELYPGLVFRL 231
Query: 175 TRPKATLKIFSTGGITVTACNDSNKI 200
PK L IF +G I T + + I
Sbjct: 232 FEPKVALLIFVSGKIVFTGAKNRDDI 257
>gi|161899533|ref|XP_001712992.1| TATA binding protein of transcription factor IID [Bigelowiella
natans]
gi|75756487|gb|ABA27380.1| TATA binding protein of transcription factor IID [Bigelowiella
natans]
Length = 204
Score = 87.4 bits (215), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 50/153 (32%), Positives = 84/153 (54%), Gaps = 5/153 (3%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEY--RRENGMVTMKLRKPYTTASIWSSGKITCTG 103
I+NVV S + L+L++IAL N E+ +R +G++ M+ R P TA ++ SG + CTG
Sbjct: 20 IHNVVLSVRLDSILDLKKIALRSKNTEFNSKRFHGLI-MRSRDPKATAIVFKSGSMICTG 78
Query: 104 ATSEDQSKIAARRYARCLQRLGF-KARFTNFRVVNVLGTCSMPFAIRILQFSEKH-RAAE 161
A SE K A ++ + ++ GF + N+R+ N+ T I ++Q R +
Sbjct: 79 AKSEKDGKEAILKFVKIIRNAGFTDLKMQNYRITNIFATMDYKVPINLMQIHIAFPRITK 138
Query: 162 YEPELHPGVTYRITRPKATLKIFSTGGITVTAC 194
+EPE+H G+ Y K + I+++G IT+T
Sbjct: 139 HEPEVHRGLLYYPFDTKLLVTIYASGKITITGA 171
>gi|294939316|ref|XP_002782409.1| TATA-binding protein, putative [Perkinsus marinus ATCC 50983]
gi|239894015|gb|EER14204.1| TATA-binding protein, putative [Perkinsus marinus ATCC 50983]
Length = 302
Score = 87.4 bits (215), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 49/146 (33%), Positives = 87/146 (59%), Gaps = 4/146 (2%)
Query: 59 LNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGATSEDQSKIAARRY 117
++L+++A N EY R+ V ++ R P TA ++ +GK+ TG+ SE+ +K AA++
Sbjct: 141 IDLKKVAFKARNAEYNPRKVNAVVIRFRDPKATAMLYGTGKVMVTGSNSEETAKDAAKKV 200
Query: 118 ARCLQRLGF--KARFTNFRVVNVLGTCSMPFAIRILQFSEKHRA-AEYEPELHPGVTYRI 174
A+ + + G +ARF F++ N++ + + F IR+ + +HR+ YEPEL+PG+ +R+
Sbjct: 201 AKIVIKSGAYPQARFRRFKIENMVASADVRFPIRLEALAYEHRSYCSYEPELYPGLVFRL 260
Query: 175 TRPKATLKIFSTGGITVTACNDSNKI 200
PK L IF +G I T + + I
Sbjct: 261 FEPKVALLIFVSGKIVFTGAKNRDDI 286
>gi|428671167|gb|EKX72085.1| transcription factor TFIID or TATA-binding protein, TBP, putative
[Babesia equi]
Length = 304
Score = 87.0 bits (214), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 48/165 (29%), Positives = 93/165 (56%), Gaps = 11/165 (6%)
Query: 45 IINNVVCSFSVRCHLNLRQIALNGVNVEY--RRENGMVTMKLRKPYTTASIWSSGKITCT 102
++ N+V S + L+LR+IA++ N EY ++ N +V +++ P T I+ +G+I T
Sbjct: 126 VVQNIVASVHLGRELDLREIAISTRNAEYNPKKFNALV-LRMHNPKCTGLIFRTGRIIIT 184
Query: 103 GATSEDQSKIAARRYARCLQRL--GFKARFTNFRVVNVLGT--CSMPFAIRILQFSEKHR 158
G+ + + +++ A+R A+ ++R+ G F NF++ N++ T C++P + +L SE
Sbjct: 185 GSRTTEAARLGAKRMAKIIRRVLGGDDFAFRNFKIENIIATFNCNVPIRLEVLS-SEHED 243
Query: 159 AAEYEPELHPGVTYRIT---RPKATLKIFSTGGITVTACNDSNKI 200
YEPE G+ +R + +A L IF +G + +T C ++
Sbjct: 244 LCNYEPEFFAGLVFRFSLTDTSEAVLLIFVSGNVIITGCKSMEEV 288
>gi|328794393|ref|XP_001123347.2| PREDICTED: TATA-box-binding protein-like, partial [Apis mellifera]
Length = 169
Score = 86.7 bits (213), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 51/130 (39%), Positives = 77/130 (59%), Gaps = 6/130 (4%)
Query: 18 PPPTQTVVPIQNHAPPQPPAHDPE--VDIIINNVVCSFSVRCHLNLRQIALNGVNVEYR- 74
P +Q V P Q+ P PA+ + ++ + NVV + ++ L L I N EY
Sbjct: 39 PSTSQNVNP-QSLISPMTPANSTKEVIEPCLQNVVSTVNLGIELPLMYINTRTRNSEYNP 97
Query: 75 -RENGMVTMKLRKPYTTASIWSSGKITCTGATSEDQSKIAARRYARCLQRLGFKARFTNF 133
R G++ M++R P TA I+ SGKI CTGA SE+ S +A R++AR +Q+LGF A+F NF
Sbjct: 98 ARFMGLI-MRIRNPRATALIFHSGKIVCTGARSEEDSYLATRKFARIIQKLGFAAKFYNF 156
Query: 134 RVVNVLGTCS 143
++ N++ TC
Sbjct: 157 KIQNIVATCD 166
Score = 37.4 bits (85), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 30/58 (51%)
Query: 137 NVLGTCSMPFAIRILQFSEKHRAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTAC 194
NV+ T ++ + ++ + + R +EY P G+ RI P+AT IF +G I T
Sbjct: 70 NVVSTVNLGIELPLMYINTRTRNSEYNPARFMGLIMRIRNPRATALIFHSGKIVCTGA 127
>gi|392522727|gb|AFM78152.1| TATA box-binding protein, partial [uncultured diatom]
gi|392522729|gb|AFM78153.1| TATA box-binding protein, partial [uncultured diatom]
Length = 114
Score = 86.7 bits (213), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 43/112 (38%), Positives = 67/112 (59%), Gaps = 2/112 (1%)
Query: 75 RENGMVTMKLRKPYTTASIWSSGKITCTGATSEDQSKIAARRYARCLQRLGFK-ARFTNF 133
R V M+LR+P TA +++SGK+ TG S S +A ++ A L+R+GF+ A + NF
Sbjct: 1 RRFAAVIMRLREPRATALVFASGKLVITGTKSSHNSSLATKKIAYILERVGFQPASYINF 60
Query: 134 RVVNVLGTCSMPFAIRILQFSEKH-RAAEYEPELHPGVTYRITRPKATLKIF 184
++ N++GT + F IR+ + H + YEPEL PG+ YR+ P+ IF
Sbjct: 61 KMQNIVGTVDVGFPIRLEGVAFGHPTFSSYEPELFPGLIYRLFEPRVVFLIF 112
>gi|392522759|gb|AFM78168.1| TATA box-binding protein, partial [uncultured diatom]
Length = 113
Score = 86.3 bits (212), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 42/111 (37%), Positives = 66/111 (59%), Gaps = 1/111 (0%)
Query: 75 RENGMVTMKLRKPYTTASIWSSGKITCTGATSEDQSKIAARRYARCLQRLGFKARFTNFR 134
R V M+LR+P A I++SGK+ TG S S +AA+R+A ++++GFK+ +F+
Sbjct: 1 RRFAAVIMRLREPRAAALIFASGKMCVTGTKSTHNSSLAAKRFAYIIEKVGFKSTGLDFK 60
Query: 135 VVNVLGTCSMPFAIRILQFSEKHRA-AEYEPELHPGVTYRITRPKATLKIF 184
V N++GT + F +R+ H + YEPEL PG+ YR+ P+ IF
Sbjct: 61 VQNMVGTVDVGFPVRLEGLVYAHSMYSSYEPELFPGLIYRLGIPRVVFLIF 111
>gi|392522753|gb|AFM78165.1| TATA box-binding protein, partial [uncultured diatom]
Length = 114
Score = 85.9 bits (211), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 45/112 (40%), Positives = 68/112 (60%), Gaps = 2/112 (1%)
Query: 75 RENGMVTMKLRKPYTTASIWSSGKITCTGATSEDQSKIAARRYARCLQRLGFKARF-TNF 133
R V M+LR+P TA I++SGK+ TG S S +A++++A + ++GFK + T+F
Sbjct: 1 RRFAAVIMRLREPRATALIFASGKMCVTGTKSVHNSTLASKKFAYIVDKVGFKPKDETDF 60
Query: 134 RVVNVLGTCSMPFAIRILQFSEKHRA-AEYEPELHPGVTYRITRPKATLKIF 184
+V N++GT + F IR+ H A YEPEL PG+ YR+ PKA +F
Sbjct: 61 KVQNMVGTLDVGFPIRLEGLVYAHFTFASYEPELFPGLIYRLYEPKAVFLVF 112
>gi|392522651|gb|AFM78114.1| TATA box-binding protein, partial [Chaetoceros affinis]
gi|392522765|gb|AFM78171.1| TATA box-binding protein, partial [uncultured diatom]
gi|392522771|gb|AFM78174.1| TATA box-binding protein, partial [uncultured diatom]
gi|392522773|gb|AFM78175.1| TATA box-binding protein, partial [uncultured diatom]
gi|392522777|gb|AFM78177.1| TATA box-binding protein, partial [uncultured diatom]
Length = 114
Score = 85.9 bits (211), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 43/112 (38%), Positives = 69/112 (61%), Gaps = 2/112 (1%)
Query: 75 RENGMVTMKLRKPYTTASIWSSGKITCTGATSEDQSKIAARRYARCLQRLGFK-ARFTNF 133
R V M+LR+P TA I++SGK+ TG S + +A++++A ++++GFK A +F
Sbjct: 1 RRFAAVIMRLREPRATALIFASGKMCVTGTKSTHNASLASKKFALIIEKVGFKTAPEVDF 60
Query: 134 RVVNVLGTCSMPFAIRILQFSEKHRA-AEYEPELHPGVTYRITRPKATLKIF 184
+V N++GT + F IR+ H A YEPEL PG+ YR+ +P+ + IF
Sbjct: 61 KVQNIVGTADVGFPIRLEGLVYAHSTFASYEPELFPGLIYRLVQPRVVILIF 112
>gi|289193261|ref|YP_003459202.1| TATA-box binding family protein [Methanocaldococcus sp. FS406-22]
gi|288939711|gb|ADC70466.1| TATA-box binding family protein [Methanocaldococcus sp. FS406-22]
Length = 180
Score = 85.5 bits (210), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 47/159 (29%), Positives = 84/159 (52%), Gaps = 6/159 (3%)
Query: 39 DPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYRREN--GMVTMKLRKPYTTASIWSS 96
+PE+ I+ NVV S + +++L ++A+ N EY E G+V +L P I+ S
Sbjct: 2 EPEIKIV--NVVVSTKIGDNIDLEEVAMILENAEYEPEQFPGLVC-RLSVPKVALLIFRS 58
Query: 97 GKITCTGATSEDQSKIAARRYARCLQRLGFKA-RFTNFRVVNVLGTCSMPFAIRILQFSE 155
GK+ CTGA S+++++IA ++ + L+ G + ++ N++ T + + +
Sbjct: 59 GKVNCTGAKSKEEAEIAIKKVIKELKEAGMDVIENPDIKIQNMVATADLGIEPNLDDIAL 118
Query: 156 KHRAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTAC 194
EYEPE PG+ YR+ PK + IF +G + +T
Sbjct: 119 MVEGTEYEPEQFPGLVYRLDDPKVVVLIFGSGKVVITGL 157
Score = 42.4 bits (98), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 41/84 (48%), Gaps = 3/84 (3%)
Query: 43 DIIINNVVCSFSVRCHLNLRQIALNGVNVEYRREN--GMVTMKLRKPYTTASIWSSGKIT 100
DI I N+V + + NL IAL EY E G+V +L P I+ SGK+
Sbjct: 95 DIKIQNMVATADLGIEPNLDDIALMVEGTEYEPEQFPGLV-YRLDDPKVVVLIFGSGKVV 153
Query: 101 CTGATSEDQSKIAARRYARCLQRL 124
TG SE+ +K A ++ ++ +
Sbjct: 154 ITGLKSEEDAKRALKKILDTIKEV 177
Score = 41.2 bits (95), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 36/73 (49%)
Query: 132 NFRVVNVLGTCSMPFAIRILQFSEKHRAAEYEPELHPGVTYRITRPKATLKIFSTGGITV 191
++VNV+ + + I + + + AEYEPE PG+ R++ PK L IF +G +
Sbjct: 4 EIKIVNVVVSTKIGDNIDLEEVAMILENAEYEPEQFPGLVCRLSVPKVALLIFRSGKVNC 63
Query: 192 TACNDSNKIPVQI 204
T + + I
Sbjct: 64 TGAKSKEEAEIAI 76
>gi|261403691|ref|YP_003247915.1| transcription factor [Methanocaldococcus vulcanius M7]
gi|261370684|gb|ACX73433.1| TATA-box binding family protein [Methanocaldococcus vulcanius M7]
Length = 180
Score = 85.5 bits (210), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 48/159 (30%), Positives = 84/159 (52%), Gaps = 6/159 (3%)
Query: 39 DPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYRREN--GMVTMKLRKPYTTASIWSS 96
+PE+ I+ NVV S + +++L ++AL N EY E G+V +L P I+ S
Sbjct: 2 EPEIKIV--NVVVSTKIGDNIDLEEVALILENAEYEPEQFPGLVC-RLSVPKVALLIFRS 58
Query: 97 GKITCTGATSEDQSKIAARRYARCLQRLGFKA-RFTNFRVVNVLGTCSMPFAIRILQFSE 155
GK+ CTGA S+++++IA ++ + L+ G + ++ N++ T + + +
Sbjct: 59 GKVNCTGAKSKEEAEIAIKKIIKELKDAGIEVIENPEIKIQNMVATADLGIEPNLDDIAL 118
Query: 156 KHRAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTAC 194
EYEPE PG+ YR+ PK + IF +G + +T
Sbjct: 119 MVEGTEYEPEQFPGLVYRLDDPKVVVLIFGSGKVVITGL 157
Score = 40.8 bits (94), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 36/72 (50%)
Query: 133 FRVVNVLGTCSMPFAIRILQFSEKHRAAEYEPELHPGVTYRITRPKATLKIFSTGGITVT 192
++VNV+ + + I + + + AEYEPE PG+ R++ PK L IF +G + T
Sbjct: 5 IKIVNVVVSTKIGDNIDLEEVALILENAEYEPEQFPGLVCRLSVPKVALLIFRSGKVNCT 64
Query: 193 ACNDSNKIPVQI 204
+ + I
Sbjct: 65 GAKSKEEAEIAI 76
Score = 39.7 bits (91), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 42/89 (47%), Gaps = 5/89 (5%)
Query: 38 HDPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYRREN--GMVTMKLRKPYTTASIWS 95
+PE+ I N+V + + NL IAL EY E G+V +L P I+
Sbjct: 92 ENPEIKI--QNMVATADLGIEPNLDDIALMVEGTEYEPEQFPGLV-YRLDDPKVVVLIFG 148
Query: 96 SGKITCTGATSEDQSKIAARRYARCLQRL 124
SGK+ TG SE+ +K A + ++ +
Sbjct: 149 SGKVVITGLKSEEDAKRALNKILETIKEV 177
>gi|440300791|gb|ELP93238.1| TATA-box-binding protein, putative [Entamoeba invadens IP1]
Length = 201
Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 52/157 (33%), Positives = 87/157 (55%), Gaps = 22/157 (14%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYRRENGMVTMKLRKPYTTASIWSSGKITCTGAT 105
I NVV +F + L+LRQI ++ + ++K +TA I +GKI CTG
Sbjct: 43 IANVVSTFQLNQQLDLRQIV----------KSAISSLK-----STALILKTGKIVCTGTR 87
Query: 106 SEDQSKIAARRYARCLQRLGF-KARFTNFRVVNVLGTCSMPFAIRIL-QFSEKHRAAEYE 163
S ++SKIAA+ ++++G+ + RF+NF V + + +C + F I + + +YE
Sbjct: 88 SIEESKIAAK----TIKKIGYNEVRFSNFNV-HTIRSCDIKFQISLRPLYDSNTDMCQYE 142
Query: 164 PELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
PE+ P + +R T+PK TL +FSTG + +T D +
Sbjct: 143 PEVFPVLVFRTTQPKVTLLVFSTGKVVLTGAKDDENL 179
>gi|349803259|gb|AEQ17102.1| putative tata box-binding protein 1 [Pipa carvalhoi]
Length = 89
Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 40/67 (59%), Positives = 50/67 (74%), Gaps = 1/67 (1%)
Query: 128 ARFTNFRVVNVLGTCSMPFAIRILQFSEKHRA-AEYEPELHPGVTYRITRPKATLKIFST 186
+FT F+VVNVL C+MPF IR+ +F++K+R A YEPELHP V YRI + TL+IFST
Sbjct: 1 VKFTEFKVVNVLAVCTMPFEIRLTEFTKKNRPHASYEPELHPAVCYRIKSLRTTLQIFST 60
Query: 187 GGITVTA 193
G ITVT
Sbjct: 61 GSITVTG 67
>gi|315427150|dbj|BAJ48765.1| transcription initiation factor TFIID TATA-box-binding protein
[Candidatus Caldiarchaeum subterraneum]
gi|315427168|dbj|BAJ48782.1| transcription initiation factor TFIID TATA-box-binding protein
[Candidatus Caldiarchaeum subterraneum]
gi|343485784|dbj|BAJ51438.1| transcription initiation factor TFIID TATA-box-binding protein
[Candidatus Caldiarchaeum subterraneum]
Length = 187
Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 56/167 (33%), Positives = 87/167 (52%), Gaps = 9/167 (5%)
Query: 32 PPQPPAHDPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYRREN--GMVTMKLRKPYT 89
P PP P+V+I NVV S ++ L+L QI +VEY+ G+V +L KP T
Sbjct: 2 PKGPP---PKVEI--QNVVSSVTLFQKLDLAQIQRTFPDVEYKPAQFPGLV-FRLAKPKT 55
Query: 90 TASIWSSGKITCTGATSEDQSKIAARRYARCLQRLGFKARFT-NFRVVNVLGTCSMPFAI 148
I+SSGK+ CTGA SE++S A R + L++ GF R + N++ + + I
Sbjct: 56 ATLIFSSGKMVCTGAKSEEESIRAVRTVVKALKKEGFVIREEPQIEIQNIVASIDLHGRI 115
Query: 149 RILQFSEKHRAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTACN 195
+ + + YEPE PG+ YR+ PK + +F++G + T
Sbjct: 116 DLERAATTLENVMYEPEQFPGLIYRMNSPKVVILMFASGKLVCTGAK 162
Score = 39.3 bits (90), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 43/88 (48%), Gaps = 5/88 (5%)
Query: 38 HDPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYRREN--GMVTMKLRKPYTTASIWS 95
+P+++I N+V S + ++L + A NV Y E G++ ++ P +++
Sbjct: 96 EEPQIEI--QNIVASIDLHGRIDLERAATTLENVMYEPEQFPGLI-YRMNSPKVVILMFA 152
Query: 96 SGKITCTGATSEDQSKIAARRYARCLQR 123
SGK+ CTGA E A + + L+
Sbjct: 153 SGKLVCTGAKYEKDVYDAVNKLQQLLEE 180
Score = 37.0 bits (84), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 16/63 (25%), Positives = 30/63 (47%)
Query: 137 NVLGTCSMPFAIRILQFSEKHRAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTACND 196
NV+ + ++ + + Q EY+P PG+ +R+ +PK IFS+G + T
Sbjct: 13 NVVSSVTLFQKLDLAQIQRTFPDVEYKPAQFPGLVFRLAKPKTATLIFSSGKMVCTGAKS 72
Query: 197 SNK 199
+
Sbjct: 73 EEE 75
>gi|452055842|gb|AGF92132.1| TATA box-binding protein, partial [Scophthalmus maximus]
Length = 72
Score = 84.3 bits (207), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 38/72 (52%), Positives = 56/72 (77%), Gaps = 1/72 (1%)
Query: 70 NVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGATSEDQSKIAARRYARCLQRLGFKA 128
N EY + V M++R+P TTA I+SSGK+ CTGA SE+QS++AAR+YAR +Q+LGF A
Sbjct: 1 NAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKSEEQSRLAARKYARVVQKLGFPA 60
Query: 129 RFTNFRVVNVLG 140
+F +F++ N++G
Sbjct: 61 KFLDFKIQNMVG 72
>gi|392522769|gb|AFM78173.1| TATA box-binding protein, partial [uncultured diatom]
Length = 114
Score = 84.3 bits (207), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 42/112 (37%), Positives = 69/112 (61%), Gaps = 2/112 (1%)
Query: 75 RENGMVTMKLRKPYTTASIWSSGKITCTGATSEDQSKIAARRYARCLQRLGFK-ARFTNF 133
R V M+LR+P TA I++SGK+ TG S + +A++++A ++++GFK A +F
Sbjct: 1 RRFAAVIMRLREPRATALIFASGKMCVTGTKSTHNASLASKKFALIIEKVGFKTAPEVDF 60
Query: 134 RVVNVLGTCSMPFAIRILQFSEKHRA-AEYEPELHPGVTYRITRPKATLKIF 184
+V N++GT + F I++ H A YEPEL PG+ YR+ +P+ + IF
Sbjct: 61 KVQNIVGTADVGFPIQLEGLVYAHSTFASYEPELFPGLIYRLVQPRVVILIF 112
>gi|197305019|pdb|2Z8U|A Chain A, Methanococcus Jannaschii Tbp
gi|197305020|pdb|2Z8U|B Chain B, Methanococcus Jannaschii Tbp
gi|197305021|pdb|2Z8U|P Chain P, Methanococcus Jannaschii Tbp
gi|197305022|pdb|2Z8U|Q Chain Q, Methanococcus Jannaschii Tbp
Length = 188
Score = 84.3 bits (207), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 47/159 (29%), Positives = 83/159 (52%), Gaps = 6/159 (3%)
Query: 39 DPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYRREN--GMVTMKLRKPYTTASIWSS 96
+PE+ I+ NVV S + +++L ++A+ N EY E G+V +L P I+ S
Sbjct: 10 EPEIKIV--NVVVSTKIGDNIDLEEVAMILENAEYEPEQFPGLVC-RLSVPKVALLIFRS 66
Query: 97 GKITCTGATSEDQSKIAARRYARCLQRLGFKA-RFTNFRVVNVLGTCSMPFAIRILQFSE 155
GK+ CTGA S+++++IA ++ + L+ G ++ N++ T + + +
Sbjct: 67 GKVNCTGAKSKEEAEIAIKKIIKELKDAGIDVIENPEIKIQNMVATADLGIEPNLDDIAL 126
Query: 156 KHRAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTAC 194
EYEPE PG+ YR+ PK + IF +G + +T
Sbjct: 127 MVEGTEYEPEQFPGLVYRLDDPKVVVLIFGSGKVVITGL 165
Score = 40.8 bits (94), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 36/73 (49%)
Query: 132 NFRVVNVLGTCSMPFAIRILQFSEKHRAAEYEPELHPGVTYRITRPKATLKIFSTGGITV 191
++VNV+ + + I + + + AEYEPE PG+ R++ PK L IF +G +
Sbjct: 12 EIKIVNVVVSTKIGDNIDLEEVAMILENAEYEPEQFPGLVCRLSVPKVALLIFRSGKVNC 71
Query: 192 TACNDSNKIPVQI 204
T + + I
Sbjct: 72 TGAKSKEEAEIAI 84
Score = 40.4 bits (93), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 43/89 (48%), Gaps = 5/89 (5%)
Query: 38 HDPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYRREN--GMVTMKLRKPYTTASIWS 95
+PE+ I N+V + + NL IAL EY E G+V +L P I+
Sbjct: 100 ENPEIKI--QNMVATADLGIEPNLDDIALMVEGTEYEPEQFPGLV-YRLDDPKVVVLIFG 156
Query: 96 SGKITCTGATSEDQSKIAARRYARCLQRL 124
SGK+ TG SE+ +K A ++ ++ +
Sbjct: 157 SGKVVITGLKSEEDAKRALKKILDTIKEV 185
>gi|392522755|gb|AFM78166.1| TATA box-binding protein, partial [uncultured diatom]
Length = 114
Score = 84.0 bits (206), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 43/112 (38%), Positives = 67/112 (59%), Gaps = 2/112 (1%)
Query: 75 RENGMVTMKLRKPYTTASIWSSGKITCTGATSEDQSKIAARRYARCLQRLGFKARF-TNF 133
R V M+LR+P TA I++SGK+ TG S S +A++++A + ++GFK + +F
Sbjct: 1 RRFAAVIMRLREPRATALIFASGKMCVTGTKSVHNSTLASKKFAYIVDKVGFKPKDEIDF 60
Query: 134 RVVNVLGTCSMPFAIRILQFSEKHRA-AEYEPELHPGVTYRITRPKATLKIF 184
+V N++GT + F IR+ + H A YEPEL PG+ YR+ PK +F
Sbjct: 61 KVQNMVGTLDVGFPIRLEGLAYAHSTFASYEPELFPGLIYRLYEPKVVFLVF 112
>gi|15668684|ref|NP_247483.1| transcription factor [Methanocaldococcus jannaschii DSM 2661]
gi|2833518|sp|Q57930.1|TBP_METJA RecName: Full=TATA-box-binding protein; AltName: Full=Box A-binding
protein; Short=BAP; AltName: Full=TATA sequence-binding
protein; Short=TBP; AltName: Full=TATA-box factor
gi|1591210|gb|AAB98497.1| transcription initiation factor IID, TATA-box binding protein
[Methanocaldococcus jannaschii DSM 2661]
Length = 183
Score = 84.0 bits (206), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 47/159 (29%), Positives = 83/159 (52%), Gaps = 6/159 (3%)
Query: 39 DPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYRREN--GMVTMKLRKPYTTASIWSS 96
+PE+ I+ NVV S + +++L ++A+ N EY E G+V +L P I+ S
Sbjct: 5 EPEIKIV--NVVVSTKIGDNIDLEEVAMILENAEYEPEQFPGLVC-RLSVPKVALLIFRS 61
Query: 97 GKITCTGATSEDQSKIAARRYARCLQRLGFKA-RFTNFRVVNVLGTCSMPFAIRILQFSE 155
GK+ CTGA S+++++IA ++ + L+ G ++ N++ T + + +
Sbjct: 62 GKVNCTGAKSKEEAEIAIKKIIKELKDAGIDVIENPEIKIQNMVATADLGIEPNLDDIAL 121
Query: 156 KHRAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTAC 194
EYEPE PG+ YR+ PK + IF +G + +T
Sbjct: 122 MVEGTEYEPEQFPGLVYRLDDPKVVVLIFGSGKVVITGL 160
Score = 40.8 bits (94), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 36/73 (49%)
Query: 132 NFRVVNVLGTCSMPFAIRILQFSEKHRAAEYEPELHPGVTYRITRPKATLKIFSTGGITV 191
++VNV+ + + I + + + AEYEPE PG+ R++ PK L IF +G +
Sbjct: 7 EIKIVNVVVSTKIGDNIDLEEVAMILENAEYEPEQFPGLVCRLSVPKVALLIFRSGKVNC 66
Query: 192 TACNDSNKIPVQI 204
T + + I
Sbjct: 67 TGAKSKEEAEIAI 79
Score = 40.4 bits (93), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 43/89 (48%), Gaps = 5/89 (5%)
Query: 38 HDPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYRREN--GMVTMKLRKPYTTASIWS 95
+PE+ I N+V + + NL IAL EY E G+V +L P I+
Sbjct: 95 ENPEIKI--QNMVATADLGIEPNLDDIALMVEGTEYEPEQFPGLV-YRLDDPKVVVLIFG 151
Query: 96 SGKITCTGATSEDQSKIAARRYARCLQRL 124
SGK+ TG SE+ +K A ++ ++ +
Sbjct: 152 SGKVVITGLKSEEDAKRALKKILDTIKEV 180
>gi|392522741|gb|AFM78159.1| TATA box-binding protein, partial [uncultured diatom]
Length = 114
Score = 84.0 bits (206), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 43/112 (38%), Positives = 67/112 (59%), Gaps = 2/112 (1%)
Query: 75 RENGMVTMKLRKPYTTASIWSSGKITCTGATSEDQSKIAARRYARCLQRLGFKARF-TNF 133
R V M+LR+P TA I++SGK+ TG S S +A++++A + ++GFK + +F
Sbjct: 1 RRFAAVIMRLREPRATALIFASGKMCVTGTKSVHNSTLASKKFAYIVDKVGFKPKDEIDF 60
Query: 134 RVVNVLGTCSMPFAIRILQFSEKHRA-AEYEPELHPGVTYRITRPKATLKIF 184
+V N++GT + F IR+ + H A YEPEL PG+ YR+ PK +F
Sbjct: 61 KVQNMVGTLDVGFPIRLERLVYAHSTFASYEPELFPGLIYRLYEPKVVFLVF 112
>gi|256810655|ref|YP_003128024.1| transcription factor [Methanocaldococcus fervens AG86]
gi|256793855|gb|ACV24524.1| TATA-box binding family protein [Methanocaldococcus fervens AG86]
Length = 180
Score = 83.6 bits (205), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 47/159 (29%), Positives = 83/159 (52%), Gaps = 6/159 (3%)
Query: 39 DPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYRREN--GMVTMKLRKPYTTASIWSS 96
+PE+ I+ NVV S + +++L ++A+ N EY E G+V +L P I+ S
Sbjct: 2 EPEIKIV--NVVVSTKIGDNIDLEEVAMILENAEYEPEQFPGLVC-RLSVPKVALLIFRS 58
Query: 97 GKITCTGATSEDQSKIAARRYARCLQRLGFKA-RFTNFRVVNVLGTCSMPFAIRILQFSE 155
GK+ CTGA S+++++IA ++ + L+ G ++ N++ T + + +
Sbjct: 59 GKVNCTGAKSKEEAEIAIKKIIKELKDAGIDVIENPEIKIQNMVATADLGIEPNLDDIAL 118
Query: 156 KHRAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTAC 194
EYEPE PG+ YR+ PK + IF +G + +T
Sbjct: 119 MVEGTEYEPEQFPGLVYRLDDPKVVVLIFGSGKVVITGL 157
Score = 40.8 bits (94), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 36/73 (49%)
Query: 132 NFRVVNVLGTCSMPFAIRILQFSEKHRAAEYEPELHPGVTYRITRPKATLKIFSTGGITV 191
++VNV+ + + I + + + AEYEPE PG+ R++ PK L IF +G +
Sbjct: 4 EIKIVNVVVSTKIGDNIDLEEVAMILENAEYEPEQFPGLVCRLSVPKVALLIFRSGKVNC 63
Query: 192 TACNDSNKIPVQI 204
T + + I
Sbjct: 64 TGAKSKEEAEIAI 76
Score = 39.7 bits (91), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 43/89 (48%), Gaps = 5/89 (5%)
Query: 38 HDPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYRREN--GMVTMKLRKPYTTASIWS 95
+PE+ I N+V + + NL IAL EY E G+V +L P I+
Sbjct: 92 ENPEIKI--QNMVATADLGIEPNLDDIALMVEGTEYEPEQFPGLV-YRLDDPKVVVLIFG 148
Query: 96 SGKITCTGATSEDQSKIAARRYARCLQRL 124
SGK+ TG SE+ +K A ++ ++ +
Sbjct: 149 SGKVVITGLKSEEDAKRALKKILDTIREV 177
>gi|392522775|gb|AFM78176.1| TATA box-binding protein, partial [uncultured diatom]
Length = 114
Score = 83.6 bits (205), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 42/112 (37%), Positives = 68/112 (60%), Gaps = 2/112 (1%)
Query: 75 RENGMVTMKLRKPYTTASIWSSGKITCTGATSEDQSKIAARRYARCLQRLGFK-ARFTNF 133
R V M+LR+P TA I++SGK+ TG S + +A++++A ++ +GF+ A +F
Sbjct: 1 RRFAAVIMRLREPRATALIFASGKMCVTGTKSTHNASLASKKFALIIEEVGFETAPEVDF 60
Query: 134 RVVNVLGTCSMPFAIRILQFSEKHRA-AEYEPELHPGVTYRITRPKATLKIF 184
+V N++GT + F IR+ H A YEPEL PG+ YR+ +P+ + IF
Sbjct: 61 KVQNIVGTADVGFPIRLEGLVYAHSTFASYEPELFPGLIYRLVQPRVVILIF 112
>gi|119601082|gb|EAW80676.1| TATA box binding protein like 2, isoform CRA_b [Homo sapiens]
Length = 113
Score = 83.6 bits (205), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 36/95 (37%), Positives = 60/95 (63%), Gaps = 1/95 (1%)
Query: 107 EDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKHRA-AEYEPE 165
+ I R+YAR +Q+LGF ARF +F++ N++G+C + F IR+ H+ + YEPE
Sbjct: 2 QKMQNITQRKYARVVQKLGFPARFLDFKIQNMVGSCDVRFPIRLEGLVLTHQQFSSYEPE 61
Query: 166 LHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
L PG+ YR+ +P+ L IF +G + +T + ++I
Sbjct: 62 LFPGLIYRMVKPRIVLLIFVSGKVVLTGAKERSEI 96
>gi|392522747|gb|AFM78162.1| TATA box-binding protein, partial [uncultured diatom]
Length = 114
Score = 83.6 bits (205), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 43/112 (38%), Positives = 66/112 (58%), Gaps = 2/112 (1%)
Query: 75 RENGMVTMKLRKPYTTASIWSSGKITCTGATSEDQSKIAARRYARCLQRLGFKARF-TNF 133
R V M+LR+P TA I++SGK+ TG S S +A++++A + ++GFK + +F
Sbjct: 1 RRFAAVIMRLREPRATALIFASGKMCVTGTKSVHSSTLASKKFAYIVDKVGFKPKDEIDF 60
Query: 134 RVVNVLGTCSMPFAIRILQFSEKHRA-AEYEPELHPGVTYRITRPKATLKIF 184
+V N++GT + F IR+ H A YEPEL PG+ YR+ PK +F
Sbjct: 61 KVQNMVGTLDVSFPIRLEGLVYAHSTFASYEPELFPGLIYRLYEPKVVFLVF 112
>gi|296109497|ref|YP_003616446.1| TATA-box binding family protein [methanocaldococcus infernus ME]
gi|295434311|gb|ADG13482.1| TATA-box binding family protein [Methanocaldococcus infernus ME]
Length = 187
Score = 83.2 bits (204), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 48/154 (31%), Positives = 81/154 (52%), Gaps = 4/154 (2%)
Query: 43 DIIINNVVCSFSVRCHLNLRQIALNGVNVEYRREN--GMVTMKLRKPYTTASIWSSGKIT 100
+I I NVV S + ++L ++AL N EY E G+V +L P ++ SGK+
Sbjct: 3 EIKIVNVVVSTKIADSIDLEEVALVLENAEYEPEQFPGLVC-RLNDPKVALLMFRSGKVN 61
Query: 101 CTGATSEDQSKIAARRYARCLQRLGFKARFT-NFRVVNVLGTCSMPFAIRILQFSEKHRA 159
CTGA S+++++ A ++ + L+ GF +V N++ T + F + + +
Sbjct: 62 CTGAKSKEEAERAIKKIIKELKDAGFDVNENPEIKVQNMVATADLGFEPDLNEIAIYVDE 121
Query: 160 AEYEPELHPGVTYRITRPKATLKIFSTGGITVTA 193
EYEPE PG+ YR+ PK + IF +G + +T
Sbjct: 122 TEYEPEQFPGLVYRLNDPKVVVLIFGSGKVVITG 155
Score = 41.2 bits (95), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 33/62 (53%)
Query: 133 FRVVNVLGTCSMPFAIRILQFSEKHRAAEYEPELHPGVTYRITRPKATLKIFSTGGITVT 192
++VNV+ + + +I + + + AEYEPE PG+ R+ PK L +F +G + T
Sbjct: 4 IKIVNVVVSTKIADSIDLEEVALVLENAEYEPEQFPGLVCRLNDPKVALLMFRSGKVNCT 63
Query: 193 AC 194
Sbjct: 64 GA 65
>gi|392522735|gb|AFM78156.1| TATA box-binding protein, partial [uncultured diatom]
gi|392522757|gb|AFM78167.1| TATA box-binding protein, partial [uncultured diatom]
Length = 114
Score = 83.2 bits (204), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 43/112 (38%), Positives = 66/112 (58%), Gaps = 2/112 (1%)
Query: 75 RENGMVTMKLRKPYTTASIWSSGKITCTGATSEDQSKIAARRYARCLQRLGFKARF-TNF 133
R V M+LR+P TA I++SGK+ TG S S +A++++A + ++GFK + +F
Sbjct: 1 RRFAAVIMRLREPRATALIFASGKMCVTGTKSVHNSTLASKKFAYIVDKVGFKPKDEIDF 60
Query: 134 RVVNVLGTCSMPFAIRILQFSEKHRA-AEYEPELHPGVTYRITRPKATLKIF 184
+V N++GT + F IR+ H A YEPEL PG+ YR+ PK +F
Sbjct: 61 KVQNMVGTLDVGFPIRLEGLVYAHSTFASYEPELFPGLIYRLYEPKVVFLVF 112
>gi|399217563|emb|CCF74450.1| unnamed protein product [Babesia microti strain RI]
Length = 283
Score = 82.8 bits (203), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 58/208 (27%), Positives = 100/208 (48%), Gaps = 15/208 (7%)
Query: 1 MTTAGMTTTHSSHSEQEPPPTQTVVPIQNHAPPQPPAHDPEVDIIINNVVCSFSVRCHLN 60
+T + + S QE + PI + H + N+V S + ++
Sbjct: 55 LTGFELVSRGESDKSQEITTFKVDKPILSKISSLTTIHSGYRSPTVQNIVASVYIGIDID 114
Query: 61 LRQIALNGVNVEY--RRENGMVTMKLRKPYTTASIWSSGKITCTGATSEDQSKIAARRYA 118
LRQ+A++ N EY ++ N ++ +L KP T+ ++ +G+I TGA + + +KI A+R
Sbjct: 115 LRQVAISTRNAEYNPKKVNALI-FRLLKPKCTSLMFQTGRIMITGAKTIEDAKIGAKRIV 173
Query: 119 RCLQRL--GFKARFTNFRVVNVLGTCSMPFAIRILQFSEKHRA-AEYEPEL------HPG 169
+ L ++ RF NF++ N++ T +R+ + +R YEPEL G
Sbjct: 174 KLLLKVLKSENIRFKNFKIENIIATADCCLPVRLESLARDYREFCSYEPELFAGEIFDSG 233
Query: 170 VTYRI--TR-PKATLKIFSTGGITVTAC 194
+ YR TR KA L +F +G I +T C
Sbjct: 234 LVYRCPPTRNTKAVLLVFVSGKIIITGC 261
>gi|345312931|ref|XP_001513505.2| PREDICTED: TATA box-binding protein-like protein 2-like
[Ornithorhynchus anatinus]
Length = 170
Score = 82.8 bits (203), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 50/152 (32%), Positives = 77/152 (50%), Gaps = 18/152 (11%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGA 104
+ N+V + ++ C L+L++IAL N EY + V M++R+P TTA I+SSGK+ CTG+
Sbjct: 20 LQNIVSTVNLACKLDLKRIALQARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGS 79
Query: 105 TSEDQSKI---AARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKHRAAE 161
+ AR R L F+ V V + S P ++
Sbjct: 80 QKRPTGNVFLVDARDGDRALATFSFRD------VSTVKISLSRP--------PDRDDIPT 125
Query: 162 YEPELHPGVTYRITRPKATLKIFSTGGITVTA 193
YEPEL PG+ YR+ +P+ L IF +G + +T
Sbjct: 126 YEPELFPGLIYRMVKPRIVLLIFVSGKVVLTG 157
>gi|392522733|gb|AFM78155.1| TATA box-binding protein, partial [uncultured diatom]
Length = 114
Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 42/112 (37%), Positives = 67/112 (59%), Gaps = 2/112 (1%)
Query: 75 RENGMVTMKLRKPYTTASIWSSGKITCTGATSEDQSKIAARRYARCLQRLGFKAR-FTNF 133
R V M+LR+P TA +++SGK TG S + +A ++ A L+R+GF+ +F
Sbjct: 1 RRFAAVIMRLREPRATALVFASGKTVITGTKSSHNASLATKKIAYILERVGFQPESHIHF 60
Query: 134 RVVNVLGTCSMPFAIRILQFSEKH-RAAEYEPELHPGVTYRITRPKATLKIF 184
+V N++GT + F IR+ + H + YEPEL PG+ YR+ +P+ +L IF
Sbjct: 61 KVQNIVGTVDVGFPIRLEGVAFAHPTFSSYEPELFPGLIYRLVQPRVSLLIF 112
>gi|304313987|ref|YP_003849134.1| TATA-box binding protein [Methanothermobacter marburgensis str.
Marburg]
gi|302587446|gb|ADL57821.1| TATA-box binding protein [Methanothermobacter marburgensis str.
Marburg]
Length = 181
Score = 82.0 bits (201), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 49/158 (31%), Positives = 84/158 (53%), Gaps = 6/158 (3%)
Query: 41 EVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYRREN--GMVTMKLRKPYTTASIWSSGK 98
+VDI I N+V S ++ ++L+ +A NV++ RE G+V KL++P T A I+ SGK
Sbjct: 3 DVDIKIENIVASATLGKSIDLQTVAEALENVDFNREQFPGLV-YKLKEPKTAALIFGSGK 61
Query: 99 ITCTGATSEDQSKIAARRYARCLQRLG--FKARFTNFRVVNVLGTCSMPFAIRILQFSEK 156
+ CTGA S + SK A + ++ + F ++ N++ + ++ + + +
Sbjct: 62 LVCTGAKSIEDSKRAIKLTVDMMRTMDPDIPEEF-EIKIQNIVASANLGKPLNLEAVALG 120
Query: 157 HRAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTAC 194
EYEPE PG+ YR+ PK L +F +G + T
Sbjct: 121 LENTEYEPEQFPGLVYRLDEPKVVLLLFGSGKVVCTGA 158
Score = 50.1 bits (118), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 45/88 (51%), Gaps = 3/88 (3%)
Query: 41 EVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYRREN--GMVTMKLRKPYTTASIWSSGK 98
E +I I N+V S ++ LNL +AL N EY E G+V +L +P ++ SGK
Sbjct: 94 EFEIKIQNIVASANLGKPLNLEAVALGLENTEYEPEQFPGLV-YRLDEPKVVLLLFGSGK 152
Query: 99 ITCTGATSEDQSKIAARRYARCLQRLGF 126
+ CTGA S + +K+ + L L
Sbjct: 153 VVCTGAKSAEDAKLGVEKTKARLAELDL 180
>gi|374636062|ref|ZP_09707646.1| TATA-box binding family protein [Methanotorris formicicus Mc-S-70]
gi|373560320|gb|EHP86587.1| TATA-box binding family protein [Methanotorris formicicus Mc-S-70]
Length = 188
Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 47/159 (29%), Positives = 82/159 (51%), Gaps = 6/159 (3%)
Query: 39 DPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYRREN--GMVTMKLRKPYTTASIWSS 96
+P++ I+ NVV S + ++L + AL N EY E G+V +L +P I+ S
Sbjct: 9 EPKIKIV--NVVVSTQIGSDIDLEEAALILDNAEYEPEQFPGLVC-RLSEPKVALLIFRS 65
Query: 97 GKITCTGATSEDQSKIAARRYARCLQRLGFKARFT-NFRVVNVLGTCSMPFAIRILQFSE 155
GK+ CTGA S++++++A ++ + L+ G +V N++ T + + +
Sbjct: 66 GKVNCTGAKSKEEAEVAIKKIIKELKDAGMDIIDDPEVKVQNMVATADLGIEPNLDDIAL 125
Query: 156 KHRAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTAC 194
EYEPE PG+ YR+ PK + IF +G + +T
Sbjct: 126 MIEGTEYEPEQFPGLVYRLDDPKVVVLIFGSGKVVITGL 164
Score = 41.6 bits (96), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 36/72 (50%)
Query: 133 FRVVNVLGTCSMPFAIRILQFSEKHRAAEYEPELHPGVTYRITRPKATLKIFSTGGITVT 192
++VNV+ + + I + + + AEYEPE PG+ R++ PK L IF +G + T
Sbjct: 12 IKIVNVVVSTQIGSDIDLEEAALILDNAEYEPEQFPGLVCRLSEPKVALLIFRSGKVNCT 71
Query: 193 ACNDSNKIPVQI 204
+ V I
Sbjct: 72 GAKSKEEAEVAI 83
>gi|307594950|ref|YP_003901267.1| TATA-box binding family protein [Vulcanisaeta distributa DSM 14429]
gi|307550151|gb|ADN50216.1| TATA-box binding family protein [Vulcanisaeta distributa DSM 14429]
Length = 193
Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 48/158 (30%), Positives = 83/158 (52%), Gaps = 4/158 (2%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYRREN--GMVTMKLRKPYTTASIWSSGKITCTG 103
I N+V + ++ L+L ++A EY E G++ ++L++P +A I+ +GK+ CTG
Sbjct: 8 IENIVATVNLGIDLDLDKLAERLPAAEYNPEQFPGLI-LRLQRPKISALIFRTGKMVCTG 66
Query: 104 ATSEDQSKIAARRYARCLQRLGFKARFT-NFRVVNVLGTCSMPFAIRILQFSEKHRAAEY 162
A SE++ K A + R L G T +V N++ + ++ + I + + + Y
Sbjct: 67 AKSENELKRAVKELVRLLNEHGADVPLTPEIQVQNIVASGNLHAEVDIEKSALMLENSMY 126
Query: 163 EPELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
EPE PG+ YR+ PK L IFS+G I T ++
Sbjct: 127 EPEQFPGLIYRMDDPKVVLLIFSSGKIVCTGAKKEQQV 164
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 39/68 (57%)
Query: 133 FRVVNVLGTCSMPFAIRILQFSEKHRAAEYEPELHPGVTYRITRPKATLKIFSTGGITVT 192
+R+ N++ T ++ + + + +E+ AAEY PE PG+ R+ RPK + IF TG + T
Sbjct: 6 YRIENIVATVNLGIDLDLDKLAERLPAAEYNPEQFPGLILRLQRPKISALIFRTGKMVCT 65
Query: 193 ACNDSNKI 200
N++
Sbjct: 66 GAKSENEL 73
Score = 43.1 bits (100), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 44/85 (51%), Gaps = 3/85 (3%)
Query: 43 DIIINNVVCSFSVRCHLNLRQIALNGVNVEYRREN--GMVTMKLRKPYTTASIWSSGKIT 100
+I + N+V S ++ +++ + AL N Y E G++ ++ P I+SSGKI
Sbjct: 96 EIQVQNIVASGNLHAEVDIEKSALMLENSMYEPEQFPGLI-YRMDDPKVVLLIFSSGKIV 154
Query: 101 CTGATSEDQSKIAARRYARCLQRLG 125
CTGA E Q + A + L+ +G
Sbjct: 155 CTGAKKEQQVRDAVFKIHDILKDIG 179
>gi|15679622|ref|NP_276739.1| transcription factor [Methanothermobacter thermautotrophicus str.
Delta H]
gi|6647868|sp|O27664.1|TBP_METTH RecName: Full=TATA-box-binding protein; AltName: Full=Box A-binding
protein; Short=BAP; AltName: Full=TATA sequence-binding
protein; Short=TBP; AltName: Full=TATA-box factor
gi|2622753|gb|AAB86100.1| TATA-binding transcription initiation factor [Methanothermobacter
thermautotrophicus str. Delta H]
Length = 181
Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 49/158 (31%), Positives = 84/158 (53%), Gaps = 6/158 (3%)
Query: 41 EVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYRREN--GMVTMKLRKPYTTASIWSSGK 98
+VDI I N+V S ++ ++L+ +A NV++ RE G+V KL++P T A I+ SGK
Sbjct: 3 DVDIKIENIVASATLGKSIDLQTVAEALENVDFNREQFPGLV-YKLKEPKTAALIFGSGK 61
Query: 99 ITCTGATSEDQSKIAARRYARCLQRLG--FKARFTNFRVVNVLGTCSMPFAIRILQFSEK 156
+ CTGA S + SK A + ++ + F ++ N++ + ++ + + +
Sbjct: 62 LVCTGAKSIEDSKRAIKLTVDMMRTMDPDIPEEF-EIKIQNIVASANLGKPLNLEAVALG 120
Query: 157 HRAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTAC 194
EYEPE PG+ YR+ PK L +F +G + T
Sbjct: 121 LENTEYEPEQFPGLVYRLDDPKVVLLLFGSGKVVCTGA 158
Score = 49.7 bits (117), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 44/88 (50%), Gaps = 3/88 (3%)
Query: 41 EVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYRREN--GMVTMKLRKPYTTASIWSSGK 98
E +I I N+V S ++ LNL +AL N EY E G+V +L P ++ SGK
Sbjct: 94 EFEIKIQNIVASANLGKPLNLEAVALGLENTEYEPEQFPGLV-YRLDDPKVVLLLFGSGK 152
Query: 99 ITCTGATSEDQSKIAARRYARCLQRLGF 126
+ CTGA S + +K+ + L L
Sbjct: 153 VVCTGAKSAEDAKLGVEKTKARLAELDL 180
>gi|325969184|ref|YP_004245376.1| 2-alkenal reductase [Vulcanisaeta moutnovskia 768-28]
gi|323708387|gb|ADY01874.1| 2-alkenal reductase [Vulcanisaeta moutnovskia 768-28]
Length = 193
Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 48/158 (30%), Positives = 83/158 (52%), Gaps = 4/158 (2%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYRREN--GMVTMKLRKPYTTASIWSSGKITCTG 103
I N+V + ++ L+L ++A EY E G++ ++L++P +A I+ +GK+ CTG
Sbjct: 8 IENIVATVNLGIDLDLDKLAERLPAAEYNPEQFPGLI-LRLQRPKISALIFRTGKMVCTG 66
Query: 104 ATSEDQSKIAARRYARCLQRLGFKARFT-NFRVVNVLGTCSMPFAIRILQFSEKHRAAEY 162
A SE++ K A + R L G T +V N++ + ++ + I + + + Y
Sbjct: 67 AKSENELKRAVKELVRLLNEHGADVPLTPEIQVQNIVASGNLHAEVDIEKSALMLENSMY 126
Query: 163 EPELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
EPE PG+ YR+ PK L IFS+G I T ++
Sbjct: 127 EPEQFPGLIYRMDDPKVVLLIFSSGKIVCTGAKKEQQV 164
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 39/68 (57%)
Query: 133 FRVVNVLGTCSMPFAIRILQFSEKHRAAEYEPELHPGVTYRITRPKATLKIFSTGGITVT 192
+R+ N++ T ++ + + + +E+ AAEY PE PG+ R+ RPK + IF TG + T
Sbjct: 6 YRIENIVATVNLGIDLDLDKLAERLPAAEYNPEQFPGLILRLQRPKISALIFRTGKMVCT 65
Query: 193 ACNDSNKI 200
N++
Sbjct: 66 GAKSENEL 73
Score = 42.7 bits (99), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 44/85 (51%), Gaps = 3/85 (3%)
Query: 43 DIIINNVVCSFSVRCHLNLRQIALNGVNVEYRREN--GMVTMKLRKPYTTASIWSSGKIT 100
+I + N+V S ++ +++ + AL N Y E G++ ++ P I+SSGKI
Sbjct: 96 EIQVQNIVASGNLHAEVDIEKSALMLENSMYEPEQFPGLI-YRMDDPKVVLLIFSSGKIV 154
Query: 101 CTGATSEDQSKIAARRYARCLQRLG 125
CTGA E Q + A + L+ +G
Sbjct: 155 CTGAKKEQQVRDAVFKIHDVLRDIG 179
>gi|392522739|gb|AFM78158.1| TATA box-binding protein, partial [uncultured diatom]
Length = 114
Score = 81.3 bits (199), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 42/112 (37%), Positives = 65/112 (58%), Gaps = 2/112 (1%)
Query: 75 RENGMVTMKLRKPYTTASIWSSGKITCTGATSEDQSKIAARRYARCLQRLGFKARF-TNF 133
R V M+LR+P TA I++SGK+ TG S S +A++++A + ++GFK + +F
Sbjct: 1 RRFAAVIMRLREPRATALIFASGKMCVTGTKSVHNSTLASKKFAYIVDKVGFKPKDEIDF 60
Query: 134 RVVNVLGTCSMPFAIRILQFSEKHRA-AEYEPELHPGVTYRITRPKATLKIF 184
+V N++GT + F IR+ H YEPEL PG+ YR+ PK +F
Sbjct: 61 KVQNMVGTLDVGFPIRLEGLVYAHSTFTSYEPELFPGLIYRLYEPKVVFLVF 112
>gi|333910819|ref|YP_004484552.1| TATA-box-binding protein [Methanotorris igneus Kol 5]
gi|333751408|gb|AEF96487.1| TATA-box-binding protein [Methanotorris igneus Kol 5]
Length = 181
Score = 81.3 bits (199), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 47/159 (29%), Positives = 81/159 (50%), Gaps = 6/159 (3%)
Query: 39 DPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYRREN--GMVTMKLRKPYTTASIWSS 96
+P++ I+ NVV S + ++L + AL N EY E G+V +L P I+ S
Sbjct: 2 EPKIKIV--NVVVSTQIGSDIDLEEAALILDNAEYEPEQFPGLVC-RLSDPKVALLIFRS 58
Query: 97 GKITCTGATSEDQSKIAARRYARCLQRLGFKARFT-NFRVVNVLGTCSMPFAIRILQFSE 155
GK+ CTGA S++++++A ++ + L+ G +V N++ T + + +
Sbjct: 59 GKVNCTGAKSKEEAEVAIKKIIKELKDAGMDIIDNPEVKVQNMVATADLGIEPNLDDIAL 118
Query: 156 KHRAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTAC 194
EYEPE PG+ YR+ PK + IF +G + +T
Sbjct: 119 MIEGTEYEPEQFPGLVYRLDDPKVVVLIFGSGKVVITGL 157
Score = 41.2 bits (95), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 36/72 (50%)
Query: 133 FRVVNVLGTCSMPFAIRILQFSEKHRAAEYEPELHPGVTYRITRPKATLKIFSTGGITVT 192
++VNV+ + + I + + + AEYEPE PG+ R++ PK L IF +G + T
Sbjct: 5 IKIVNVVVSTQIGSDIDLEEAALILDNAEYEPEQFPGLVCRLSDPKVALLIFRSGKVNCT 64
Query: 193 ACNDSNKIPVQI 204
+ V I
Sbjct: 65 GAKSKEEAEVAI 76
>gi|392522743|gb|AFM78160.1| TATA box-binding protein, partial [uncultured diatom]
Length = 114
Score = 80.9 bits (198), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 42/112 (37%), Positives = 65/112 (58%), Gaps = 2/112 (1%)
Query: 75 RENGMVTMKLRKPYTTASIWSSGKITCTGATSEDQSKIAARRYARCLQRLGFKARF-TNF 133
R V M+LR+P TA I++SGK+ TG S +A++++A + ++GFK + +F
Sbjct: 1 RRFAAVIMRLREPRATALIFASGKMCVTGTKSVHSPTLASKKFAYIVDKVGFKPKDEIDF 60
Query: 134 RVVNVLGTCSMPFAIRILQFSEKHRA-AEYEPELHPGVTYRITRPKATLKIF 184
+V N++GT + F IR+ H A YEPEL PG+ YR+ PK +F
Sbjct: 61 KVQNMVGTLDVGFPIRLEGLVYAHSTFASYEPELFPGLIYRLYEPKVVFLVF 112
>gi|392522745|gb|AFM78161.1| TATA box-binding protein, partial [uncultured diatom]
Length = 114
Score = 80.9 bits (198), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 42/112 (37%), Positives = 65/112 (58%), Gaps = 2/112 (1%)
Query: 75 RENGMVTMKLRKPYTTASIWSSGKITCTGATSEDQSKIAARRYARCLQRLGFKARF-TNF 133
R V M+LR+P TA I++SGK+ TG S S +A++++A + ++GFK + +F
Sbjct: 1 RRFAAVIMRLREPRATALIFASGKMCVTGTKSVHNSTLASKKFAYIVDKVGFKPKDEIDF 60
Query: 134 RVVNVLGTCSMPFAIRILQFSEKHRA-AEYEPELHPGVTYRITRPKATLKIF 184
+V N++GT + F IR+ H A YEPEL PG+ YR+ P +F
Sbjct: 61 KVQNMVGTLDVGFPIRLEGLVYAHSTFASYEPELFPGLIYRLYEPMVVFLVF 112
>gi|325188734|emb|CCA23265.1| TATAboxbinding protein putative [Albugo laibachii Nc14]
Length = 216
Score = 80.9 bits (198), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 45/149 (30%), Positives = 78/149 (52%), Gaps = 8/149 (5%)
Query: 48 NVVCSFSVRCHLNLRQIALNGVNVEYRRE---NGMVTMKLRKPYTTASIWSSGKITCTGA 104
N++ S S+R L+++ +AL N +Y NGM+ ++ R P + + SGK GA
Sbjct: 30 NLLGSGSIRGALDVKNLALMIRNADYAVRGGFNGMI-LRFRTPRASVIAYRSGKFIVIGA 88
Query: 105 TSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKHRAAEYEP 164
S + + +++ LQ+ G +F++ N C + F + + K +A+YEP
Sbjct: 89 KSPAVADLVIQKFQDILQKSGAPHELVSFKIHNFCAACDLKFR----KIAYKDASAQYEP 144
Query: 165 ELHPGVTYRITRPKATLKIFSTGGITVTA 193
EL PG+ YR+ PK T+ +F +G I +T
Sbjct: 145 ELFPGLIYRMLVPKCTMLVFISGKIVITG 173
>gi|193882828|gb|ACF27894.1| hypothetical protein CG18009, partial [Drosophila melanogaster]
gi|193882830|gb|ACF27895.1| hypothetical protein CG18009, partial [Drosophila melanogaster]
gi|193882832|gb|ACF27896.1| hypothetical protein CG18009, partial [Drosophila melanogaster]
gi|193882834|gb|ACF27897.1| hypothetical protein CG18009, partial [Drosophila melanogaster]
gi|193882836|gb|ACF27898.1| hypothetical protein CG18009, partial [Drosophila melanogaster]
gi|193882838|gb|ACF27899.1| hypothetical protein CG18009, partial [Drosophila melanogaster]
gi|193882840|gb|ACF27900.1| hypothetical protein CG18009, partial [Drosophila melanogaster]
gi|193882842|gb|ACF27901.1| hypothetical protein CG18009, partial [Drosophila melanogaster]
gi|193882844|gb|ACF27902.1| hypothetical protein CG18009, partial [Drosophila melanogaster]
gi|193882846|gb|ACF27903.1| hypothetical protein CG18009, partial [Drosophila melanogaster]
gi|193882848|gb|ACF27904.1| hypothetical protein CG18009, partial [Drosophila melanogaster]
gi|193882850|gb|ACF27905.1| hypothetical protein CG18009, partial [Drosophila melanogaster]
gi|193882852|gb|ACF27906.1| hypothetical protein CG18009, partial [Drosophila melanogaster]
gi|193882854|gb|ACF27907.1| hypothetical protein CG18009, partial [Drosophila melanogaster]
gi|193882856|gb|ACF27908.1| hypothetical protein CG18009, partial [Drosophila melanogaster]
Length = 223
Score = 80.9 bits (198), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 38/65 (58%), Positives = 43/65 (66%), Gaps = 2/65 (3%)
Query: 14 SEQEPPPTQTVVPIQNHAPPQPPAHDPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEY 73
+E E + PI H P H E+DI+INNVVCSFSV CHL LR+IAL G NVEY
Sbjct: 161 AEDEEESSNNAKPIDLHQPIADNEH--ELDIVINNVVCSFSVGCHLKLREIALQGSNVEY 218
Query: 74 RRENG 78
RRENG
Sbjct: 219 RRENG 223
>gi|300120388|emb|CBK19942.2| unnamed protein product [Blastocystis hominis]
Length = 199
Score = 80.5 bits (197), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 50/159 (31%), Positives = 81/159 (50%), Gaps = 6/159 (3%)
Query: 47 NNVVCSFSVRCHLNLRQIALNGVNVEY--RRENGMVTMKLRKPYTTASIWSSGKITCTGA 104
+N+V + +++ +NL ++ N EY +R + M+ M++R+P TA ++ SGK+ G
Sbjct: 25 SNIVSTVNMKKEINLPEVVDKLRNTEYNPKRFDAMI-MRIREPKCTALVFKSGKVVLAGT 83
Query: 105 TSEDQSKIAARRYARCLQRL--GFKARFTNFRVVNVLGTCSMPFAIRILQFS-EKHRAAE 161
S ++ A RR L R G K+ T + N++ F IR+ S E +
Sbjct: 84 KSTKDTEAAGRRVVDILSRFTGGNKSDDTKPIIHNMVAVGDFKFPIRLEGLSIEYLESTT 143
Query: 162 YEPELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
YEPEL G+ YR+ P L IF +G + VT D + I
Sbjct: 144 YEPELFSGLIYRMKNPDVVLLIFVSGKVVVTGAKDESDI 182
>gi|157057845|gb|ABV02910.1| TATA box binding protein [Phodopus sungorus]
Length = 68
Score = 80.5 bits (197), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 34/60 (56%), Positives = 51/60 (85%)
Query: 80 VTMKLRKPYTTASIWSSGKITCTGATSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVL 139
V M++R+P TTA I+SSGK+ CTGA SE+QS++AAR+YAR +Q+LGF A+F +F++ N++
Sbjct: 9 VIMRIREPRTTALIFSSGKMVCTGAKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMV 68
>gi|392522749|gb|AFM78163.1| TATA box-binding protein, partial [uncultured diatom]
Length = 114
Score = 80.5 bits (197), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 42/112 (37%), Positives = 65/112 (58%), Gaps = 2/112 (1%)
Query: 75 RENGMVTMKLRKPYTTASIWSSGKITCTGATSEDQSKIAARRYARCLQRLGFKAR-FTNF 133
R V +LR+P TA I++SGK+ TG S S +A++++A + ++GFK + +F
Sbjct: 1 RRFATVITRLREPRATALIFASGKMCVTGTKSVHNSTLASKKFAYIVDKVGFKPKDGIDF 60
Query: 134 RVVNVLGTCSMPFAIRILQFSEKHRA-AEYEPELHPGVTYRITRPKATLKIF 184
+V N++GT + F IR+ H A YEPEL PG+ YR+ PK +F
Sbjct: 61 KVQNMVGTLDVGFPIRLEGLVYAHSTFASYEPELFPGLIYRLYEPKVVFLVF 112
>gi|392522737|gb|AFM78157.1| TATA box-binding protein, partial [uncultured diatom]
Length = 114
Score = 80.1 bits (196), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 42/112 (37%), Positives = 65/112 (58%), Gaps = 2/112 (1%)
Query: 75 RENGMVTMKLRKPYTTASIWSSGKITCTGATSEDQSKIAARRYARCLQRLGFKARF-TNF 133
R V +LR+P TA I++SGK+ TG S S +A++++A + ++GFK + +F
Sbjct: 1 RRFAAVITRLREPRATALIFASGKMCVTGTKSVHNSTLASKKFAYIVDKVGFKPKDEIDF 60
Query: 134 RVVNVLGTCSMPFAIRILQFSEKHRA-AEYEPELHPGVTYRITRPKATLKIF 184
+V N++GT + F IR+ H A YEPEL PG+ YR+ PK +F
Sbjct: 61 KVQNMVGTLDVGFPIRLEGLVYAHSTFASYEPELFPGLIYRLYEPKVVFLVF 112
>gi|167042577|gb|ABZ07300.1| putative transcription factor TFIID (or TATA-binding protein, TBP)
[uncultured marine crenarchaeote HF4000_ANIW133I6]
Length = 186
Score = 78.6 bits (192), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 48/153 (31%), Positives = 81/153 (52%), Gaps = 4/153 (2%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYRREN--GMVTMKLRKPYTTASIWSSGKITCTG 103
I NVV S SV ++L +I +VEY + G+V +++ P T I+SSGK+ CTG
Sbjct: 10 IENVVASASVDQRMDLNEITRKFADVEYHPDQFPGLV-FRIKSPKTATLIFSSGKMVCTG 68
Query: 104 ATSEDQSKIAARRYARCLQRLGFKARFTNFRVV-NVLGTCSMPFAIRILQFSEKHRAAEY 162
A SE S+ A + + L++ G K + + N++ + ++ I + Q + + Y
Sbjct: 69 AKSETMSRKAVKLVVQQLRKGGIKIKKDAVVTIQNIVASINLGGRIHLEQAARTLPRSMY 128
Query: 163 EPELHPGVTYRITRPKATLKIFSTGGITVTACN 195
EPE PG+ +R+ PK + +FS+G + T
Sbjct: 129 EPEQFPGLIHRMVDPKTVILLFSSGKLVCTGAK 161
>gi|167042151|gb|ABZ06885.1| putative transcription factor TFIID (or TATA-binding protein, TBP)
[uncultured marine crenarchaeote HF4000_ANIW93E5]
Length = 186
Score = 78.6 bits (192), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 48/153 (31%), Positives = 81/153 (52%), Gaps = 4/153 (2%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYRREN--GMVTMKLRKPYTTASIWSSGKITCTG 103
I NVV S SV ++L +I +VEY + G+V +++ P T I+SSGK+ CTG
Sbjct: 10 IENVVASASVDQRMDLNEITRKFADVEYHPDQFPGLV-FRIKSPKTATLIFSSGKMVCTG 68
Query: 104 ATSEDQSKIAARRYARCLQRLGFKARFTNFRVV-NVLGTCSMPFAIRILQFSEKHRAAEY 162
A SE S+ A + + L++ G K + + N++ + ++ I + Q + + Y
Sbjct: 69 AKSETMSRKAVKLVVQQLRKGGIKIKKDAVVTIQNIVASINLGGRIHLEQAARTLPRSMY 128
Query: 163 EPELHPGVTYRITRPKATLKIFSTGGITVTACN 195
EPE PG+ +R+ PK + +FS+G + T
Sbjct: 129 EPEQFPGLIHRMVDPKTVILLFSSGKLVCTGAK 161
>gi|325959799|ref|YP_004291265.1| TATA-box-binding protein [Methanobacterium sp. AL-21]
gi|325331231|gb|ADZ10293.1| TATA-box-binding protein [Methanobacterium sp. AL-21]
Length = 181
Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 50/157 (31%), Positives = 81/157 (51%), Gaps = 6/157 (3%)
Query: 42 VDIIINNVVCSFSVRCHLNLRQIALNGVNVEYRREN--GMVTMKLRKPYTTASIWSSGKI 99
V+I + N+V S ++ L+L Q+A VEY E G+V KL++P T A I+ SGK+
Sbjct: 4 VEIKVENIVASAALGKSLDLPQVAPALEGVEYNSEQFPGLV-YKLKEPKTAALIFGSGKL 62
Query: 100 TCTGATSEDQSKIAARRYARCLQRLGFKA--RFTNFRVVNVLGTCSMPFAIRILQFSEKH 157
CTGA S + SK A ++ L + F ++ N++ + ++ + + +
Sbjct: 63 VCTGAKSIEDSKKAIHIAVDKMRALDTEIPHEF-EIKIQNIVASANLGKTLNLESVALDL 121
Query: 158 RAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTAC 194
EYEPE PG+ YR+ PK L +F +G + T
Sbjct: 122 ENTEYEPEQFPGLVYRLDDPKVVLLLFGSGKVVCTGA 158
Score = 50.1 bits (118), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 45/88 (51%), Gaps = 3/88 (3%)
Query: 41 EVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYRREN--GMVTMKLRKPYTTASIWSSGK 98
E +I I N+V S ++ LNL +AL+ N EY E G+V +L P ++ SGK
Sbjct: 94 EFEIKIQNIVASANLGKTLNLESVALDLENTEYEPEQFPGLV-YRLDDPKVVLLLFGSGK 152
Query: 99 ITCTGATSEDQSKIAARRYARCLQRLGF 126
+ CTGA S + +++ + L L
Sbjct: 153 VVCTGAKSFEDAQLGVEKTKERLAELDL 180
>gi|48477578|ref|YP_023284.1| transcription factor [Picrophilus torridus DSM 9790]
gi|56749679|sp|Q6L1R1.1|TBP_PICTO RecName: Full=TATA-box-binding protein; AltName: Full=Box A-binding
protein; Short=BAP; AltName: Full=TATA sequence-binding
protein; Short=TBP; AltName: Full=TATA-box factor
gi|48430226|gb|AAT43091.1| TATA-box binding protein [Picrophilus torridus DSM 9790]
Length = 184
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 50/162 (30%), Positives = 79/162 (48%), Gaps = 6/162 (3%)
Query: 44 IIINNVVCSFSVRCHLNLRQIALNGVNVEYRREN--GMVTMKLRKPYTTASIWSSGKITC 101
I I N+V S S+ HL+L +IAL EY E G++ +L++P T I+ SGK+ C
Sbjct: 7 ITIENIVASTSLAEHLDLSKIALALEGSEYEPEQFPGLI-YRLQEPKTAVLIFRSGKVNC 65
Query: 102 TGATSEDQSKIAARRYARCLQRLGFKARFT-NFRVVNVLGTCSMPFAIRI--LQFSEKHR 158
TGA + D K L++ + + V N++ + + + + S
Sbjct: 66 TGAKNLDDVKKTIDIIIDKLKKADIEVYDNPDIIVQNIVAVYDLESNLNLTDIAMSLGLE 125
Query: 159 AAEYEPELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
EYEPE PG+ YR+ PK L +F +G + T + N+I
Sbjct: 126 NVEYEPEQFPGLVYRVEEPKVVLLLFGSGKVVCTGAKEENEI 167
Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 53/88 (60%), Gaps = 5/88 (5%)
Query: 43 DIIINNVVCSFSVRCHLNLRQIALN-GV-NVEYRREN--GMVTMKLRKPYTTASIWSSGK 98
DII+ N+V + + +LNL IA++ G+ NVEY E G+V ++ +P ++ SGK
Sbjct: 97 DIIVQNIVAVYDLESNLNLTDIAMSLGLENVEYEPEQFPGLV-YRVEEPKVVLLLFGSGK 155
Query: 99 ITCTGATSEDQSKIAARRYARCLQRLGF 126
+ CTGA E++ + A + + LQ++G
Sbjct: 156 VVCTGAKEENEIEQAVIKVKKDLQKVGL 183
>gi|336121024|ref|YP_004575799.1| TATA-box-binding protein [Methanothermococcus okinawensis IH1]
gi|334855545|gb|AEH06021.1| TATA-box-binding protein [Methanothermococcus okinawensis IH1]
Length = 181
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 49/155 (31%), Positives = 78/155 (50%), Gaps = 5/155 (3%)
Query: 43 DIIINNVVCSFSVRCHLNLRQIALNGVNVEYRREN--GMVTMKLRKPYTTASIWSSGKIT 100
DI I NVV S + ++L A N EY E G+V +L +P I+ SGK+
Sbjct: 4 DIKIVNVVVSTKIGNDIDLEYAADILDNAEYEPEQFPGLVC-RLSEPKVALLIFRSGKLN 62
Query: 101 CTGATSEDQSKIAARRYARCLQRLGFKARFT-NFRVVNVLGTCSMPFAIRILQFSEKHRA 159
CTGA S+++++IA ++ L+ GF+ +V N++ T + + +
Sbjct: 63 CTGAKSKEEAEIAIKKVIGYLKEAGFEIDENPEVKVQNMVATAELGIEPNLDDIA-TLEG 121
Query: 160 AEYEPELHPGVTYRITRPKATLKIFSTGGITVTAC 194
EYEPE PG+ YR+ PK + IF +G + +T
Sbjct: 122 TEYEPEQFPGLVYRLDNPKVVVLIFGSGKVVITGL 156
Score = 41.6 bits (96), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 37/73 (50%)
Query: 132 NFRVVNVLGTCSMPFAIRILQFSEKHRAAEYEPELHPGVTYRITRPKATLKIFSTGGITV 191
+ ++VNV+ + + I + ++ AEYEPE PG+ R++ PK L IF +G +
Sbjct: 4 DIKIVNVVVSTKIGNDIDLEYAADILDNAEYEPEQFPGLVCRLSEPKVALLIFRSGKLNC 63
Query: 192 TACNDSNKIPVQI 204
T + + I
Sbjct: 64 TGAKSKEEAEIAI 76
>gi|18313147|ref|NP_559814.1| transcription factor [Pyrobaculum aerophilum str. IM2]
gi|24638239|sp|Q8ZVR0.1|TBP_PYRAE RecName: Full=TATA-box-binding protein; AltName: Full=Box A-binding
protein; Short=BAP; AltName: Full=TATA sequence-binding
protein; Short=TBP; AltName: Full=TATA-box factor
gi|18160658|gb|AAL63996.1| transcription initiation factor TFIID (TATA-binding) [Pyrobaculum
aerophilum str. IM2]
Length = 199
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 45/158 (28%), Positives = 80/158 (50%), Gaps = 4/158 (2%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYRREN--GMVTMKLRKPYTTASIWSSGKITCTG 103
I N+V + ++ L+L Q+A EY + G++ ++L KP +A I+ +GK+ CTG
Sbjct: 10 IENIVATVNLGVELDLEQLAERLTMAEYNPDQFPGLI-LRLTKPRISALIFRTGKMVCTG 68
Query: 104 ATSEDQSKIAARRYARCLQRLGFKARFT-NFRVVNVLGTCSMPFAIRILQFSEKHRAAEY 162
A +E+ K A R + L+ G F ++ N++ + ++ + + Q A Y
Sbjct: 69 AKNEEDLKNAVRALVKLLKDHGADVPFDPEVQIQNIVASGNLHAEVDLEQAVLMLENAMY 128
Query: 163 EPELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
EPE PG+ YR++ P+ + IF +G I T +
Sbjct: 129 EPEQFPGLIYRMSSPRVVILIFGSGKIVCTGAKSEKDV 166
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 58/126 (46%), Gaps = 8/126 (6%)
Query: 3 TAGMTTTHSSHSEQEPPPTQTVVPI-QNHAPPQPPAHDPEVDIIINNVVCSFSVRCHLNL 61
T M T + + E + +V + ++H P DPEV I N+V S ++ ++L
Sbjct: 61 TGKMVCTGAKNEEDLKNAVRALVKLLKDHGADVP--FDPEVQI--QNIVASGNLHAEVDL 116
Query: 62 RQIALNGVNVEYRREN--GMVTMKLRKPYTTASIWSSGKITCTGATSEDQSKIAARRYAR 119
Q L N Y E G++ ++ P I+ SGKI CTGA SE A ++
Sbjct: 117 EQAVLMLENAMYEPEQFPGLI-YRMSSPRVVILIFGSGKIVCTGAKSEKDVATAVQKLYN 175
Query: 120 CLQRLG 125
L+ LG
Sbjct: 176 QLKELG 181
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 39/69 (56%)
Query: 132 NFRVVNVLGTCSMPFAIRILQFSEKHRAAEYEPELHPGVTYRITRPKATLKIFSTGGITV 191
++R+ N++ T ++ + + Q +E+ AEY P+ PG+ R+T+P+ + IF TG +
Sbjct: 7 SYRIENIVATVNLGVELDLEQLAERLTMAEYNPDQFPGLILRLTKPRISALIFRTGKMVC 66
Query: 192 TACNDSNKI 200
T + +
Sbjct: 67 TGAKNEEDL 75
>gi|294939320|ref|XP_002782411.1| TATA-box factor binding protein, putative [Perkinsus marinus ATCC
50983]
gi|239894017|gb|EER14206.1| TATA-box factor binding protein, putative [Perkinsus marinus ATCC
50983]
Length = 255
Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 83/151 (54%), Gaps = 5/151 (3%)
Query: 45 IINNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKP-YTTASIWSSGKITCT 102
+++NV+ SF + ++ + IA N N EY R++ ++ P T I+ +GK+
Sbjct: 79 VLDNVIASFELGIDIDPKTIAFNLRNCEYNPRKHNCAVIRFTSPTKATCHIYRNGKVMIN 138
Query: 103 GATSEDQSKIAARRYARCLQRLGFK--ARFTNFRVVNVLGTCSMPFAIRILQFSEKHRA- 159
GA + + +K ++ + ++R+ +F NF+V N++ + + F IR+ + + H A
Sbjct: 139 GAYTIELAKKIGKKIVKLVRRITHNPSIKFINFKVENMIASVDVRFPIRLERLAYDHSAY 198
Query: 160 AEYEPELHPGVTYRITRPKATLKIFSTGGIT 190
A YEPEL G+ +R+ PK + I+ +G I+
Sbjct: 199 ATYEPELSSGLYFRLFDPKLVIMIYVSGKIS 229
>gi|329764826|ref|ZP_08256418.1| 2-alkenal reductase [Candidatus Nitrosoarchaeum limnia SFB1]
gi|340344477|ref|ZP_08667609.1| TATA-box binding protein [Candidatus Nitrosoarchaeum koreensis MY1]
gi|393796672|ref|ZP_10380036.1| 2-alkenal reductase [Candidatus Nitrosoarchaeum limnia BG20]
gi|329138693|gb|EGG42937.1| 2-alkenal reductase [Candidatus Nitrosoarchaeum limnia SFB1]
gi|339519618|gb|EGP93341.1| TATA-box binding protein [Candidatus Nitrosoarchaeum koreensis MY1]
Length = 186
Score = 77.4 bits (189), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 45/153 (29%), Positives = 82/153 (53%), Gaps = 4/153 (2%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYRREN--GMVTMKLRKPYTTASIWSSGKITCTG 103
+ NVV S SV ++L +I +VEY + G+V +L+ P T I++SGK+ CTG
Sbjct: 10 VENVVASASVDQKMDLNEITRTFPDVEYHPDQFPGLV-FRLKSPKTATLIFTSGKMVCTG 68
Query: 104 ATSEDQSKIAARRYARCLQRLGFKA-RFTNFRVVNVLGTCSMPFAIRILQFSEKHRAAEY 162
+ SE+ ++ A + + L++ G K + + N++ + ++ I + Q + + Y
Sbjct: 69 SKSEEMARKAVKTVVQKLRKGGIKVKKDATVEIQNIVASINLGGKIHLEQAARTLPRSMY 128
Query: 163 EPELHPGVTYRITRPKATLKIFSTGGITVTACN 195
EPE PG+ +R+ PK + +FS+G + T
Sbjct: 129 EPEQFPGLIHRMLDPKTVILLFSSGKLVCTGAK 161
>gi|392522751|gb|AFM78164.1| TATA box-binding protein, partial [uncultured diatom]
Length = 114
Score = 77.4 bits (189), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 41/111 (36%), Positives = 64/111 (57%), Gaps = 2/111 (1%)
Query: 75 RENGMVTMKLRKPYTTASIWSSGKITCTGATSEDQSKIAARRYARCLQRLGFKARF-TNF 133
R V M+LR+P TA I++SGK+ TG S S +A++++A + ++GFK + +F
Sbjct: 1 RRFAAVIMRLREPRATALIFASGKMCVTGTKSVHNSTLASKKFAYIVDKVGFKPKDEIDF 60
Query: 134 RVVNVLGTCSMPFAIRILQFSEKHRA-AEYEPELHPGVTYRITRPKATLKI 183
+V N++GT + F R+ H A YEPEL PG+ YR+ PK +
Sbjct: 61 KVQNMVGTLDVGFPNRLEGLVYAHSTFASYEPELFPGLIYRLYEPKVVFLV 111
>gi|159041771|ref|YP_001541023.1| transcription factor [Caldivirga maquilingensis IC-167]
gi|157920606|gb|ABW02033.1| 2-alkenal reductase [Caldivirga maquilingensis IC-167]
Length = 194
Score = 77.4 bits (189), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 44/162 (27%), Positives = 88/162 (54%), Gaps = 4/162 (2%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYRREN--GMVTMKLRKPYTTASIWSSGKITCTG 103
I N+V + ++ L+L ++A EY + G++ ++ ++P +A I+ +GK+ CTG
Sbjct: 9 IENIVATVNLGVDLDLERLAEVLPAAEYNPDQFPGLI-LRFQRPKISALIFRTGKMVCTG 67
Query: 104 ATSEDQSKIAARRYARCLQRLGFKAR-FTNFRVVNVLGTCSMPFAIRILQFSEKHRAAEY 162
A SED+ K A + + L + G + + ++ +V N++ + ++ + I + + + Y
Sbjct: 68 AKSEDELKRAVKYLVKTLNQRGAQIQNDSDIQVQNIVASGNLHAEVNIEKAALLLENSMY 127
Query: 163 EPELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKIPVQI 204
EPE PG+ YR++ PK + +FS+G I T + V +
Sbjct: 128 EPEQFPGLIYRMSDPKVVILVFSSGKIVCTGAKKEADVAVAV 169
Score = 46.6 bits (109), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 37/68 (54%)
Query: 133 FRVVNVLGTCSMPFAIRILQFSEKHRAAEYEPELHPGVTYRITRPKATLKIFSTGGITVT 192
+R+ N++ T ++ + + + +E AAEY P+ PG+ R RPK + IF TG + T
Sbjct: 7 YRIENIVATVNLGVDLDLERLAEVLPAAEYNPDQFPGLILRFQRPKISALIFRTGKMVCT 66
Query: 193 ACNDSNKI 200
+++
Sbjct: 67 GAKSEDEL 74
Score = 44.7 bits (104), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 43/84 (51%), Gaps = 3/84 (3%)
Query: 43 DIIINNVVCSFSVRCHLNLRQIALNGVNVEYRREN--GMVTMKLRKPYTTASIWSSGKIT 100
DI + N+V S ++ +N+ + AL N Y E G++ ++ P ++SSGKI
Sbjct: 97 DIQVQNIVASGNLHAEVNIEKAALLLENSMYEPEQFPGLI-YRMSDPKVVILVFSSGKIV 155
Query: 101 CTGATSEDQSKIAARRYARCLQRL 124
CTGA E +A R+ L+ +
Sbjct: 156 CTGAKKEADVAVAVRKLYDKLKEI 179
>gi|424813992|ref|ZP_18239170.1| TATA binding protein of transcription factor TFIID [Candidatus
Nanosalina sp. J07AB43]
gi|339757608|gb|EGQ42865.1| TATA binding protein of transcription factor TFIID [Candidatus
Nanosalina sp. J07AB43]
Length = 183
Score = 77.4 bits (189), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 50/156 (32%), Positives = 77/156 (49%), Gaps = 8/156 (5%)
Query: 43 DIIINNVVCSFSVRCHLNLRQIALNGVNVEYRREN--GMVTMKLRKPYTTASIWSSGKIT 100
DI I NVV S + L L +IA+ N EY E G+V +L +P A ++ SGKI
Sbjct: 6 DIDIQNVVASATFDQSLPLDRIAIYLENTEYEPEQFPGLV-YRLEEPKAAALLFGSGKIV 64
Query: 101 CTGATSEDQSKIAARRYARCLQRLGFKARFTN---FRVVNVLGTCSMPFAIRILQFSEKH 157
CTG S +Q+K A + L+ TN V N++ + + + + + + +
Sbjct: 65 CTGTQSPEQAKEATHKIIDELKEA--DVEITNKPEITVQNIVASSELDATLNLNRIAFEL 122
Query: 158 RAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTA 193
EYEPE PG+ YR+ P+ +FS+G + T
Sbjct: 123 VGTEYEPEQFPGLVYRLDEPEVVFLLFSSGNLVCTG 158
Score = 44.7 bits (104), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 41/84 (48%), Gaps = 3/84 (3%)
Query: 43 DIIINNVVCSFSVRCHLNLRQIALNGVNVEYRREN--GMVTMKLRKPYTTASIWSSGKIT 100
+I + N+V S + LNL +IA V EY E G+V +L +P ++SSG +
Sbjct: 97 EITVQNIVASSELDATLNLNRIAFELVGTEYEPEQFPGLV-YRLDEPEVVFLLFSSGNLV 155
Query: 101 CTGATSEDQSKIAARRYARCLQRL 124
CTG + D + R L+ +
Sbjct: 156 CTGGRTYDDVENGISNLERDLKEI 179
>gi|327311063|ref|YP_004337960.1| TATA-box-binding protein [Thermoproteus uzoniensis 768-20]
gi|326947542|gb|AEA12648.1| TATA-box-binding protein [Thermoproteus uzoniensis 768-20]
Length = 207
Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 47/162 (29%), Positives = 80/162 (49%), Gaps = 4/162 (2%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYRREN--GMVTMKLRKPYTTASIWSSGKITCTG 103
I N+V + ++ L+L Q+A EY + G++ ++L KP +A I+ +GK+ CTG
Sbjct: 13 IENIVATVNLGVELDLEQLAEKLPVAEYNPDQFPGLI-LRLTKPRISALIFRTGKMVCTG 71
Query: 104 ATSEDQSKIAARRYARCLQRLGFKARFT-NFRVVNVLGTCSMPFAIRILQFSEKHRAAEY 162
A +E+ K A + L G +V N++ + S+ + + Q + A Y
Sbjct: 72 AKNENDLKNAVHALVKLLNDHGANVPLNPEVQVQNIVASGSLNAEVDLEQAALLLENAMY 131
Query: 163 EPELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKIPVQI 204
EPE PG+ YR+T P+ + IF +G I T + V +
Sbjct: 132 EPEQFPGLIYRMTDPRVVVLIFGSGKIVCTGAKSEKDVAVAV 173
Score = 49.3 bits (116), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 38/67 (56%)
Query: 134 RVVNVLGTCSMPFAIRILQFSEKHRAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTA 193
++ N++ T ++ + + Q +EK AEY P+ PG+ R+T+P+ + IF TG + T
Sbjct: 12 KIENIVATVNLGVELDLEQLAEKLPVAEYNPDQFPGLILRLTKPRISALIFRTGKMVCTG 71
Query: 194 CNDSNKI 200
+ N +
Sbjct: 72 AKNENDL 78
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 56/125 (44%), Gaps = 6/125 (4%)
Query: 3 TAGMTTTHSSHSEQEPPPTQTVVPIQNHAPPQPPAHDPEVDIIINNVVCSFSVRCHLNLR 62
T M T + + +V + N P +PEV + N+V S S+ ++L
Sbjct: 64 TGKMVCTGAKNENDLKNAVHALVKLLNDHGANVPL-NPEVQV--QNIVASGSLNAEVDLE 120
Query: 63 QIALNGVNVEYRREN--GMVTMKLRKPYTTASIWSSGKITCTGATSEDQSKIAARRYARC 120
Q AL N Y E G++ ++ P I+ SGKI CTGA SE +A ++
Sbjct: 121 QAALLLENAMYEPEQFPGLI-YRMTDPRVVVLIFGSGKIVCTGAKSEKDVAVAVQQLYDK 179
Query: 121 LQRLG 125
L+ +G
Sbjct: 180 LREIG 184
>gi|347523992|ref|YP_004781562.1| TATA-box binding family protein [Pyrolobus fumarii 1A]
gi|343460874|gb|AEM39310.1| TATA-box binding family protein [Pyrolobus fumarii 1A]
Length = 207
Score = 77.0 bits (188), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 50/169 (29%), Positives = 85/169 (50%), Gaps = 4/169 (2%)
Query: 35 PPAHDPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYRREN--GMVTMKLRKPYTTAS 92
P PE I N+V + ++ +L+L I + NVEY E G+V +L +P TA
Sbjct: 17 PVIEPPEPSYRIENIVATVTLDQNLDLYAIETSIPNVEYNPEQFPGLV-FRLEEPKVTAL 75
Query: 93 IWSSGKITCTGATSEDQSKIAARRYARCLQRLGFK-ARFTNFRVVNVLGTCSMPFAIRIL 151
I+ SGK+ TGA S Q A ++ R L+R G ++ N++ + ++ + +
Sbjct: 76 IFKSGKMVVTGAKSTQQLIEAVKKIIRELKRHGIVIVGRPKVQIQNIVASANLNVCVDLE 135
Query: 152 QFSEKHRAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
+ + + YEPE PG+ YR+ P+ L IFS+G + +T ++
Sbjct: 136 KAALTLENSMYEPEQFPGLIYRMQNPRVVLLIFSSGKMVITGAKREEEV 184
>gi|118576418|ref|YP_876161.1| TATA-box binding protein (TBP), component of TFIID and TFIIIB
[Cenarchaeum symbiosum A]
gi|118194939|gb|ABK77857.1| TATA-box binding protein (TBP), component of TFIID and TFIIIB
[Cenarchaeum symbiosum A]
Length = 186
Score = 77.0 bits (188), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 46/155 (29%), Positives = 83/155 (53%), Gaps = 4/155 (2%)
Query: 44 IIINNVVCSFSVRCHLNLRQIALNGVNVEYRREN--GMVTMKLRKPYTTASIWSSGKITC 101
I + NVV S SV ++L +I +VEY + G+V +L+ P T I++SGK+ C
Sbjct: 8 ISVENVVASASVDQKMDLNEITRTFPDVEYHPDQFPGLV-FRLKSPKTATLIFTSGKMVC 66
Query: 102 TGATSEDQSKIAARRYARCLQRLGFKARFTN-FRVVNVLGTCSMPFAIRILQFSEKHRAA 160
TG+ SE+ ++ A + + L++ G K + + N++ + ++ I + Q + +
Sbjct: 67 TGSKSEEMARKAVKTVVQKLRKGGIKVKKEAVVEIQNIVASINLGGKIHLEQAARTLPRS 126
Query: 161 EYEPELHPGVTYRITRPKATLKIFSTGGITVTACN 195
YEPE PG+ +R+ PK + +FS+G + T
Sbjct: 127 MYEPEQFPGLIHRMLDPKTVILLFSSGKLVCTGAK 161
>gi|448567600|ref|ZP_21637525.1| transcription factor [Haloferax prahovense DSM 18310]
gi|445711598|gb|ELZ63388.1| transcription factor [Haloferax prahovense DSM 18310]
Length = 188
Score = 77.0 bits (188), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 49/156 (31%), Positives = 73/156 (46%), Gaps = 6/156 (3%)
Query: 44 IIINNVVCSFSVRCHLNLRQIALNGVNVEYRREN--GMVTMKLRKPYTTASIWSSGKITC 101
I I NVV S V L+L +++L+ +Y EN G+V + R P + ++ SGKI C
Sbjct: 10 IEIQNVVASTEVPVELDLERLSLDMDGTDYDPENFPGLV-YRTRDPKSACLVFRSGKIVC 68
Query: 102 TGATSEDQSKIAARRYARCLQRLGFKA-RFTNFRVVNVLGTCSMPFAIRI--LQFSEKHR 158
TGA S D A LG + V N++ + + A+ + L
Sbjct: 69 TGADSVDDVSTAIETLFDEFTDLGVPVPEDADITVQNIVSSADLGEALNLNALAIGLGLE 128
Query: 159 AAEYEPELHPGVTYRITRPKATLKIFSTGGITVTAC 194
A EYEPE PG+ YR+ P + +F +G I +T
Sbjct: 129 AVEYEPEQFPGLVYRLDEPSVVVLMFGSGKIVITGA 164
Score = 42.4 bits (98), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 18/73 (24%), Positives = 35/73 (47%)
Query: 132 NFRVVNVLGTCSMPFAIRILQFSEKHRAAEYEPELHPGVTYRITRPKATLKIFSTGGITV 191
+ + NV+ + +P + + + S +Y+PE PG+ YR PK+ +F +G I
Sbjct: 9 SIEIQNVVASTEVPVELDLERLSLDMDGTDYDPENFPGLVYRTRDPKSACLVFRSGKIVC 68
Query: 192 TACNDSNKIPVQI 204
T + + + I
Sbjct: 69 TGADSVDDVSTAI 81
>gi|161528106|ref|YP_001581932.1| 2-alkenal reductase [Nitrosopumilus maritimus SCM1]
gi|407462144|ref|YP_006773461.1| 2-alkenal reductase [Candidatus Nitrosopumilus koreensis AR1]
gi|160339407|gb|ABX12494.1| 2-alkenal reductase [Nitrosopumilus maritimus SCM1]
gi|407045766|gb|AFS80519.1| 2-alkenal reductase [Candidatus Nitrosopumilus koreensis AR1]
Length = 186
Score = 77.0 bits (188), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 45/153 (29%), Positives = 82/153 (53%), Gaps = 4/153 (2%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYRREN--GMVTMKLRKPYTTASIWSSGKITCTG 103
+ NVV S SV ++L +I +VEY + G+V +L+ P T I++SGK+ CTG
Sbjct: 10 VENVVASASVDQKMDLNEITRTFPDVEYHPDQFPGLV-FRLKSPKTATLIFTSGKMVCTG 68
Query: 104 ATSEDQSKIAARRYARCLQRLGFKARFTN-FRVVNVLGTCSMPFAIRILQFSEKHRAAEY 162
+ SE+ ++ A + + L++ G K + + N++ + ++ I + Q + + Y
Sbjct: 69 SKSEEMARKAVKTVVQKLRKGGIKVKKDAVVEIQNIVASINLGGKIHLEQAARTLPRSMY 128
Query: 163 EPELHPGVTYRITRPKATLKIFSTGGITVTACN 195
EPE PG+ +R+ PK + +FS+G + T
Sbjct: 129 EPEQFPGLIHRMLDPKTVILLFSSGKLVCTGAK 161
>gi|119872319|ref|YP_930326.1| transcription factor [Pyrobaculum islandicum DSM 4184]
gi|166227824|sp|A1RSQ1.1|TBP_PYRIL RecName: Full=TATA-box-binding protein; AltName: Full=Box A-binding
protein; Short=BAP; AltName: Full=TATA sequence-binding
protein; Short=TBP; AltName: Full=TATA-box factor
gi|119673727|gb|ABL87983.1| TATA binding protein of transcription factor TFIID [Pyrobaculum
islandicum DSM 4184]
Length = 199
Score = 76.6 bits (187), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 45/158 (28%), Positives = 81/158 (51%), Gaps = 4/158 (2%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYRREN--GMVTMKLRKPYTTASIWSSGKITCTG 103
I N+V + ++ L+L ++A EY + G++ ++L KP +A I+ +GK+ CTG
Sbjct: 10 IENIVATVNLGVELDLEKLAERLAMAEYNPDQFPGLI-LRLTKPRISALIFRTGKMVCTG 68
Query: 104 ATSEDQSKIAARRYARCLQRLGFKARFT-NFRVVNVLGTCSMPFAIRILQFSEKHRAAEY 162
A +E+ K A R + L+ G + F +V N++ + ++ + + Q A Y
Sbjct: 69 AKNEEDLKNAVRALVKLLRDHGAEVPFDPEVQVQNIVASGNLHAEVDLEQAVLMLENAMY 128
Query: 163 EPELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
EPE PG+ YR++ P+ + IF +G I T +
Sbjct: 129 EPEQFPGLIYRMSSPRVVMLIFGSGKIVCTGAKSERDV 166
Score = 49.7 bits (117), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 58/126 (46%), Gaps = 8/126 (6%)
Query: 3 TAGMTTTHSSHSEQEPPPTQTVVPI-QNHAPPQPPAHDPEVDIIINNVVCSFSVRCHLNL 61
T M T + + E + +V + ++H P DPEV + N+V S ++ ++L
Sbjct: 61 TGKMVCTGAKNEEDLKNAVRALVKLLRDHGAEVP--FDPEVQV--QNIVASGNLHAEVDL 116
Query: 62 RQIALNGVNVEYRREN--GMVTMKLRKPYTTASIWSSGKITCTGATSEDQSKIAARRYAR 119
Q L N Y E G++ ++ P I+ SGKI CTGA SE A ++
Sbjct: 117 EQAVLMLENAMYEPEQFPGLIY-RMSSPRVVMLIFGSGKIVCTGAKSERDVATAVQKLYN 175
Query: 120 CLQRLG 125
L+ LG
Sbjct: 176 QLKDLG 181
Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 38/68 (55%)
Query: 133 FRVVNVLGTCSMPFAIRILQFSEKHRAAEYEPELHPGVTYRITRPKATLKIFSTGGITVT 192
+R+ N++ T ++ + + + +E+ AEY P+ PG+ R+T+P+ + IF TG + T
Sbjct: 8 YRIENIVATVNLGVELDLEKLAERLAMAEYNPDQFPGLILRLTKPRISALIFRTGKMVCT 67
Query: 193 ACNDSNKI 200
+ +
Sbjct: 68 GAKNEEDL 75
>gi|268324523|emb|CBH38111.1| TATA-box binding protein 2 [uncultured archaeon]
Length = 183
Score = 76.6 bits (187), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 52/177 (29%), Positives = 88/177 (49%), Gaps = 20/177 (11%)
Query: 41 EVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYRRENGMVTMK--------LRKPYTTAS 92
EVDI I NVV + + L+L VE + E M T K ++P +
Sbjct: 3 EVDIKIENVVANARITESLDLEY-------VESQLEEAMFTKKKFPGLVYRTKEPKSAFL 55
Query: 93 IWSSGKITCTGATSEDQSKIAARRYARCLQRLGFKAR-FTNFRVVNVLGTCSMPFAIRI- 150
I+ SGK+ CTGA +++ ++ + + L+ +G + F+V N++ + + + +
Sbjct: 56 IFRSGKVVCTGAKTKEGVRVVMDKLSTDLRGIGIEVEEHPEFKVQNIVASADLGKELNLG 115
Query: 151 -LQFSEKHRAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTACN--DSNKIPVQI 204
+ + EYEPE+ PG+ YRIT PK+ + IFS+G + +T D K V+I
Sbjct: 116 AIVMGLELEGMEYEPEVFPGLVYRITDPKSAILIFSSGKLVITGGKTLDDCKKSVEI 172
>gi|312136408|ref|YP_004003745.1| tata binding protein of transcription factor tfiid [Methanothermus
fervidus DSM 2088]
gi|311224127|gb|ADP76983.1| TATA binding protein of transcription factor TFIID [Methanothermus
fervidus DSM 2088]
Length = 183
Score = 76.6 bits (187), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 47/159 (29%), Positives = 83/159 (52%), Gaps = 4/159 (2%)
Query: 41 EVDIIINNVVCSFSVRCHLNLRQI--ALNGVNVEYRRENGMVTMKLRKPYTTASIWSSGK 98
+++I I N+V S ++ ++L +I AL VN ++ G+V KL KP T A I+ SGK
Sbjct: 5 DLEIEIENIVASATLGRPIDLSKISKALKSVNFNRKQFPGLV-YKLDKPKTAALIFGSGK 63
Query: 99 ITCTGATSEDQSKIAARRYARCLQRLGFKA-RFTNFRVVNVLGTCSMPFAIRILQFSEKH 157
+ CTGA S + S A + ++ + ++ N++ + ++ + + + +
Sbjct: 64 LVCTGAKSVEDSIKAIKTTVNKIREVDPDIPEDYEIKIQNIVASANLSKPLNLDEIAMTL 123
Query: 158 RAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTACND 196
EYEPE PG+ YR+ +PK L +F +G + T D
Sbjct: 124 ENTEYEPEQFPGLVYRLDKPKVVLLLFGSGKVVCTGARD 162
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 49/94 (52%), Gaps = 7/94 (7%)
Query: 39 DPEV----DIIINNVVCSFSVRCHLNLRQIALNGVNVEYRREN--GMVTMKLRKPYTTAS 92
DP++ +I I N+V S ++ LNL +IA+ N EY E G+V +L KP
Sbjct: 90 DPDIPEDYEIKIQNIVASANLSKPLNLDEIAMTLENTEYEPEQFPGLV-YRLDKPKVVLL 148
Query: 93 IWSSGKITCTGATSEDQSKIAARRYARCLQRLGF 126
++ SGK+ CTGA +K+ ++ L+ L
Sbjct: 149 LFGSGKVVCTGARDPKDAKLGVKKTKERLKELNL 182
>gi|123507489|ref|XP_001329427.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121912382|gb|EAY17204.1| hypothetical protein TVAG_291560 [Trichomonas vaginalis G3]
Length = 235
Score = 76.6 bits (187), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 48/168 (28%), Positives = 83/168 (49%), Gaps = 6/168 (3%)
Query: 38 HDPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSS 96
+ P + ++N V C C L+L +I + N EY T++ ++P TA + +
Sbjct: 47 NQPPIPKVVNIVAC-VDYGCKLDLLKITSSTRNSEYNPIRFPAATLRNKEPKATALAFKN 105
Query: 97 GKITCTGATSEDQSKIAARRYARCLQRLGFK-ARFTNFRVVNVLGT--CSMPFAIRILQF 153
GK+ G S D + AAR + R + +G K + +F + N++ T C P + +
Sbjct: 106 GKVNIVGCKSADIALKAARCFGRLFKNIGIKDVKIKSFSIANMVATMDCKFPIHLESIAS 165
Query: 154 SEKH-RAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
S H + A Y PE++ G+ YR+ PK TL I+ +G I +T ++
Sbjct: 166 SPGHIKFATYNPEIYAGLIYRLASPKTTLMIYVSGKIIITGAKSEEEL 213
Score = 36.2 bits (82), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 41/74 (55%), Gaps = 6/74 (8%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYRREN-----GMVTMKLRKPYTTASIWSSGKIT 100
I N+V + + ++L IA + ++++ N G++ +L P TT I+ SGKI
Sbjct: 145 IANMVATMDCKFPIHLESIASSPGHIKFATYNPEIYAGLI-YRLASPKTTLMIYVSGKII 203
Query: 101 CTGATSEDQSKIAA 114
TGA SE++ K A+
Sbjct: 204 ITGAKSEEELKAAS 217
>gi|408381757|ref|ZP_11179305.1| transcription factor [Methanobacterium formicicum DSM 3637]
gi|407815688|gb|EKF86258.1| transcription factor [Methanobacterium formicicum DSM 3637]
Length = 181
Score = 75.9 bits (185), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 50/158 (31%), Positives = 81/158 (51%), Gaps = 6/158 (3%)
Query: 41 EVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYRREN--GMVTMKLRKPYTTASIWSSGK 98
+V+I + N+V S ++ ++L Q+A VEY E G+V KL++P T A I+ SGK
Sbjct: 3 KVEIKVENIVASATLGKSVDLPQVAPALEGVEYNLEQFPGLV-YKLKEPKTAALIFGSGK 61
Query: 99 ITCTGATSEDQSKIAARRYARCLQRLG--FKARFTNFRVVNVLGTCSMPFAIRILQFSEK 156
+ CTGA S + SK A ++ L F +V N++ + ++ + + +
Sbjct: 62 LVCTGAKSIENSKKAIHIAVDKMRTLDPDIPHEF-EIKVQNIVASANLDKTLNLEAVALD 120
Query: 157 HRAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTAC 194
EYEPE PG+ YR+ PK L +F +G + T
Sbjct: 121 LENTEYEPEQFPGLVYRLGDPKVVLLLFGSGKVVCTGA 158
Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 44/88 (50%), Gaps = 3/88 (3%)
Query: 41 EVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYRREN--GMVTMKLRKPYTTASIWSSGK 98
E +I + N+V S ++ LNL +AL+ N EY E G+V +L P ++ SGK
Sbjct: 94 EFEIKVQNIVASANLDKTLNLEAVALDLENTEYEPEQFPGLV-YRLGDPKVVLLLFGSGK 152
Query: 99 ITCTGATSEDQSKIAARRYARCLQRLGF 126
+ CTGA + +++ + L L
Sbjct: 153 VVCTGAKTISDAQLGVEKTKERLSELDL 180
>gi|298710178|emb|CBJ26253.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 358
Score = 75.9 bits (185), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 53/195 (27%), Positives = 92/195 (47%), Gaps = 25/195 (12%)
Query: 22 QTVVPIQNHAPPQPPAHDPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEY--RRENGM 79
Q + P +NH + + + NV + ++C ++L+ + + N EY +R +
Sbjct: 120 QVIGPFENHG---------QCKLSMVNVTATADMKCTIDLKTVVMRARNAEYNPKRFSAC 170
Query: 80 VTMKLRK--PYTTASIWSSGKITCTGATSEDQSKIAARRYARCLQRL----GFKARFTNF 133
+ + K P TA ++ +GK+ TG+ S A + +AR L +L G + NF
Sbjct: 171 IIRLINKNEPKATALVFKTGKVVVTGSRSNASVDYACKTFARILSKLDNGSGGPSHKINF 230
Query: 134 ------RVVNVLGTCSMPFAIRI--LQFSEKHRAAEYEPELHPGVTYRITRPKATLKIFS 185
RV N++ T + F IR+ L S + YEPEL PG+ YR+ PK IF
Sbjct: 231 DLERDRRVQNMVATTDVGFPIRLEGLVASNQGCFCNYEPELFPGLIYRMKDPKICFLIFV 290
Query: 186 TGGITVTACNDSNKI 200
+G + +T + ++
Sbjct: 291 SGKVVLTGAKSAQQL 305
>gi|389847604|ref|YP_006349843.1| TATA-binding transcription initiation factor [Haloferax
mediterranei ATCC 33500]
gi|448617457|ref|ZP_21666044.1| transcription factor [Haloferax mediterranei ATCC 33500]
gi|388244910|gb|AFK19856.1| TATA-binding transcription initiation factor [Haloferax
mediterranei ATCC 33500]
gi|445748377|gb|ELZ99824.1| transcription factor [Haloferax mediterranei ATCC 33500]
Length = 188
Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 50/157 (31%), Positives = 74/157 (47%), Gaps = 12/157 (7%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYRREN--GMVTMKLRKPYTTASIWSSGKITCTG 103
I NVV S +V L+L ++++ V +Y +N G+V + ++P + I+ SGKI CTG
Sbjct: 12 IQNVVASTAVGQELDLESLSMDLVGADYDPDNFPGLV-YRTQEPKAASLIFRSGKIVCTG 70
Query: 104 ATSEDQSKIAARRYARCLQRLGF------KARFTNFRVVNVLGTCSMPFAIRILQFSEKH 157
A+S D A + L +LG +A N LGT + L
Sbjct: 71 ASSVDDVDRALEQVFGELSKLGIPTEDREEATIQNIVSSADLGTT---LNLNALAIGLGL 127
Query: 158 RAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTAC 194
EYEPE PG+ YRI P + +F +G I +T
Sbjct: 128 EDVEYEPEQFPGLVYRIDEPSVVVLMFGSGKIVITGA 164
Score = 44.3 bits (103), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 37/74 (50%)
Query: 127 KARFTNFRVVNVLGTCSMPFAIRILQFSEKHRAAEYEPELHPGVTYRITRPKATLKIFST 186
+AR + + NV+ + ++ + + S A+Y+P+ PG+ YR PKA IF +
Sbjct: 4 EARLESLEIQNVVASTAVGQELDLESLSMDLVGADYDPDNFPGLVYRTQEPKAASLIFRS 63
Query: 187 GGITVTACNDSNKI 200
G I T + + +
Sbjct: 64 GKIVCTGASSVDDV 77
>gi|84489891|ref|YP_448123.1| transcription factor [Methanosphaera stadtmanae DSM 3091]
gi|121731087|sp|Q2NFC3.1|TBP_METST RecName: Full=TATA-box-binding protein; AltName: Full=Box A-binding
protein; Short=BAP; AltName: Full=TATA sequence-binding
protein; Short=TBP; AltName: Full=TATA-box factor
gi|84373210|gb|ABC57480.1| TATA-box binding protein [Methanosphaera stadtmanae DSM 3091]
Length = 183
Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 48/162 (29%), Positives = 82/162 (50%), Gaps = 4/162 (2%)
Query: 41 EVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYRREN--GMVTMKLRKPYTTASIWSSGK 98
+V+I + N+V S ++ L L +IA NVEY E G+V KL+ P T A I+ SGK
Sbjct: 3 DVEIKVENIVASATLGKSLELPKIAPALENVEYNLEQFPGLV-FKLKDPKTAALIFGSGK 61
Query: 99 ITCTGATSEDQSKIAARRYARCLQRLGFKA-RFTNFRVVNVLGTCSMPFAIRILQFSEKH 157
+ CTGA + S A ++ L + ++ N++ + ++ + + +
Sbjct: 62 LVCTGAKCIEDSIKAIHMTVDKIRELDTEIPEEFEIKIQNIVASANLGKVLNLEAVALDL 121
Query: 158 RAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTACNDSNK 199
EYEPE PG+ YR++ PK L +F +G + T +++
Sbjct: 122 ENTEYEPEQFPGLVYRLSDPKVVLLLFGSGKVVCTGAKTADQ 163
Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 44/78 (56%), Gaps = 3/78 (3%)
Query: 41 EVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYRREN--GMVTMKLRKPYTTASIWSSGK 98
E +I I N+V S ++ LNL +AL+ N EY E G+V +L P ++ SGK
Sbjct: 94 EFEIKIQNIVASANLGKVLNLEAVALDLENTEYEPEQFPGLV-YRLSDPKVVLLLFGSGK 152
Query: 99 ITCTGATSEDQSKIAARR 116
+ CTGA + DQ+ + ++
Sbjct: 153 VVCTGAKTADQALLGVQK 170
>gi|150403180|ref|YP_001330474.1| transcription factor [Methanococcus maripaludis C7]
gi|166227820|sp|A6VIP7.1|TBP_METM7 RecName: Full=TATA-box-binding protein; AltName: Full=Box A-binding
protein; Short=BAP; AltName: Full=TATA sequence-binding
protein; Short=TBP; AltName: Full=TATA-box factor
gi|150034210|gb|ABR66323.1| TATA-box binding [Methanococcus maripaludis C7]
Length = 181
Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 51/158 (32%), Positives = 76/158 (48%), Gaps = 7/158 (4%)
Query: 39 DPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYRREN--GMVTMKLRKPYTTASIWSS 96
+PE+ I+ NVV S + ++L A N EY E G+V +L P I+ S
Sbjct: 2 EPEIKIV--NVVVSTQIGTDIDLEYAADILDNAEYEPEQFPGLVC-RLSDPKVALLIFRS 58
Query: 97 GKITCTGATSEDQSKIAARRYARCLQRLGFKARFT-NFRVVNVLGTCSMPFAIRILQFSE 155
GK+ CTGA S+D + IA + + LQ G V N++ T + + S
Sbjct: 59 GKLNCTGAKSKDDAVIAINKIIKELQEAGMDIIDNPEVNVQNMVATTELGMEPNLDDIS- 117
Query: 156 KHRAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTA 193
EYEPE PG+ YR++ PK + IF +G + +T
Sbjct: 118 TLECTEYEPEQFPGLVYRLSDPKVVVLIFGSGKVVITG 155
Score = 41.2 bits (95), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 36/72 (50%)
Query: 133 FRVVNVLGTCSMPFAIRILQFSEKHRAAEYEPELHPGVTYRITRPKATLKIFSTGGITVT 192
++VNV+ + + I + ++ AEYEPE PG+ R++ PK L IF +G + T
Sbjct: 5 IKIVNVVVSTQIGTDIDLEYAADILDNAEYEPEQFPGLVCRLSDPKVALLIFRSGKLNCT 64
Query: 193 ACNDSNKIPVQI 204
+ + I
Sbjct: 65 GAKSKDDAVIAI 76
>gi|171185805|ref|YP_001794724.1| transcription factor [Pyrobaculum neutrophilum V24Sta]
gi|226703562|sp|B1Y949.1|TBP_THENV RecName: Full=TATA-box-binding protein; AltName: Full=Box A-binding
protein; Short=BAP; AltName: Full=TATA sequence-binding
protein; Short=TBP; AltName: Full=TATA-box factor
gi|170935017|gb|ACB40278.1| 2-alkenal reductase [Pyrobaculum neutrophilum V24Sta]
Length = 197
Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 44/158 (27%), Positives = 80/158 (50%), Gaps = 4/158 (2%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYRREN--GMVTMKLRKPYTTASIWSSGKITCTG 103
I N+V + ++ L+L ++A EY + G++ ++L KP +A I+ +GK+ CTG
Sbjct: 10 IENIVATVNLGVELDLEKLAERLTMAEYNPDQFPGLI-LRLTKPRISALIFRTGKMVCTG 68
Query: 104 ATSEDQSKIAARRYARCLQRLGFKARFT-NFRVVNVLGTCSMPFAIRILQFSEKHRAAEY 162
A +E+ K A R + L+ G F ++ N++ + ++ + + Q A Y
Sbjct: 69 AKNEEDLKNAVRALVKLLKDHGADVPFDPEVQIQNIVASGNLFAEVDLEQAVLMLENAMY 128
Query: 163 EPELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
EPE PG+ YR++ P+ + IF +G I T +
Sbjct: 129 EPEQFPGLIYRMSSPRVVILIFGSGKIVCTGAKSEKDV 166
Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 58/126 (46%), Gaps = 8/126 (6%)
Query: 3 TAGMTTTHSSHSEQEPPPTQTVVPI-QNHAPPQPPAHDPEVDIIINNVVCSFSVRCHLNL 61
T M T + + E + +V + ++H P DPEV I N+V S ++ ++L
Sbjct: 61 TGKMVCTGAKNEEDLKNAVRALVKLLKDHGADVP--FDPEVQI--QNIVASGNLFAEVDL 116
Query: 62 RQIALNGVNVEYRREN--GMVTMKLRKPYTTASIWSSGKITCTGATSEDQSKIAARRYAR 119
Q L N Y E G++ ++ P I+ SGKI CTGA SE A ++
Sbjct: 117 EQAVLMLENAMYEPEQFPGLIY-RMSSPRVVILIFGSGKIVCTGAKSEKDVATAVQKLYN 175
Query: 120 CLQRLG 125
L+ LG
Sbjct: 176 QLKDLG 181
Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 39/69 (56%)
Query: 132 NFRVVNVLGTCSMPFAIRILQFSEKHRAAEYEPELHPGVTYRITRPKATLKIFSTGGITV 191
++R+ N++ T ++ + + + +E+ AEY P+ PG+ R+T+P+ + IF TG +
Sbjct: 7 SYRIENIVATVNLGVELDLEKLAERLTMAEYNPDQFPGLILRLTKPRISALIFRTGKMVC 66
Query: 192 TACNDSNKI 200
T + +
Sbjct: 67 TGAKNEEDL 75
>gi|327400113|ref|YP_004340952.1| TATA-box-binding protein [Archaeoglobus veneficus SNP6]
gi|327315621|gb|AEA46237.1| TATA-box-binding protein [Archaeoglobus veneficus SNP6]
Length = 184
Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 44/155 (28%), Positives = 80/155 (51%), Gaps = 6/155 (3%)
Query: 44 IIINNVVCSFSVRCHLNLRQIALNGVNVEYRREN--GMVTMKLRKPYTTASIWSSGKITC 101
I I NVV S + +++L +IA + EY+ + G+V ++ ++P A I+ SGK+ C
Sbjct: 7 IKIENVVASTQIGENIDLNKIAKEVKDAEYKPKQFPGLV-LRTKEPKAAALIFRSGKVVC 65
Query: 102 TGATSEDQSKIAARRYARCLQRLGFKARFT-NFRVVNVLGTCSMPFAIRI--LQFSEKHR 158
TG+ S + + A R+ + + LG +V N++ + + + + +
Sbjct: 66 TGSKSVEDANRAVRQVVKIISELGIPVILEPEVKVQNIVASADLGVDLNLNAIAIGLGLE 125
Query: 159 AAEYEPELHPGVTYRITRPKATLKIFSTGGITVTA 193
EYEPE PG+ YR+ +P+ + IF +G + VT
Sbjct: 126 NIEYEPEQFPGLVYRLDKPRVVVLIFGSGKMVVTG 160
Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 48/96 (50%), Gaps = 7/96 (7%)
Query: 35 PPAHDPEVDIIINNVVCSFSVRCHLNLRQIALN-GV-NVEYRREN--GMVTMKLRKPYTT 90
P +PEV + N+V S + LNL IA+ G+ N+EY E G+V +L KP
Sbjct: 91 PVILEPEVKV--QNIVASADLGVDLNLNAIAIGLGLENIEYEPEQFPGLV-YRLDKPRVV 147
Query: 91 ASIWSSGKITCTGATSEDQSKIAARRYARCLQRLGF 126
I+ SGK+ TG + + + A R A L LG
Sbjct: 148 VLIFGSGKMVVTGGKNPEDAVKAVERIAEELSALGL 183
>gi|410722027|ref|ZP_11361343.1| TATA-box binding protein (TBP), component of TFIID and TFIIIB
[Methanobacterium sp. Maddingley MBC34]
gi|410597924|gb|EKQ52528.1| TATA-box binding protein (TBP), component of TFIID and TFIIIB
[Methanobacterium sp. Maddingley MBC34]
Length = 181
Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 48/155 (30%), Positives = 79/155 (50%), Gaps = 4/155 (2%)
Query: 43 DIIINNVVCSFSVRCHLNLRQIALNGVNVEYRREN--GMVTMKLRKPYTTASIWSSGKIT 100
+I + N+V S ++ L+L Q+A VEY E G+V K+++P T A I+ SGK+
Sbjct: 5 EIKVENIVTSATIGKDLDLPQVAPALEGVEYNLEQFPGLV-YKIKEPKTAALIFGSGKLV 63
Query: 101 CTGATSEDQSKIAARRYARCLQRLGFKA-RFTNFRVVNVLGTCSMPFAIRILQFSEKHRA 159
CTGA S + SK A ++ L + +V N++ + ++ + + +
Sbjct: 64 CTGAKSIENSKKAIHIAVDKMRTLDPEIPHEYEMKVQNIVASANLEKTLNLEAVALDLEN 123
Query: 160 AEYEPELHPGVTYRITRPKATLKIFSTGGITVTAC 194
EYEPE PG+ YR+ PK L +F +G + T
Sbjct: 124 TEYEPEQFPGLVYRLGEPKVVLLLFGSGKVVCTGA 158
Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 48/94 (51%), Gaps = 7/94 (7%)
Query: 39 DPEV----DIIINNVVCSFSVRCHLNLRQIALNGVNVEYRREN--GMVTMKLRKPYTTAS 92
DPE+ ++ + N+V S ++ LNL +AL+ N EY E G+V +L +P
Sbjct: 88 DPEIPHEYEMKVQNIVASANLEKTLNLEAVALDLENTEYEPEQFPGLV-YRLGEPKVVLL 146
Query: 93 IWSSGKITCTGATSEDQSKIAARRYARCLQRLGF 126
++ SGK+ CTGA + +++ + L L
Sbjct: 147 LFGSGKVVCTGAKTIADAQLGVEKTKERLSELDL 180
>gi|150400624|ref|YP_001324390.1| transcription factor [Methanococcus aeolicus Nankai-3]
gi|166227819|sp|A6UTF6.1|TBP_META3 RecName: Full=TATA-box-binding protein; AltName: Full=Box A-binding
protein; Short=BAP; AltName: Full=TATA sequence-binding
protein; Short=TBP; AltName: Full=TATA-box factor
gi|150013327|gb|ABR55778.1| TATA-box binding protein [Methanococcus aeolicus Nankai-3]
Length = 181
Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 50/155 (32%), Positives = 75/155 (48%), Gaps = 5/155 (3%)
Query: 43 DIIINNVVCSFSVRCHLNLRQIALNGVNVEYRREN--GMVTMKLRKPYTTASIWSSGKIT 100
+I I NVV S + ++L +A N EY E G+V +L P I+ SGK+
Sbjct: 4 EIKIVNVVVSTKIGDDIDLEYVADVLDNSEYEPEQFPGLVC-RLSDPKVALLIFRSGKLN 62
Query: 101 CTGATSEDQSKIAARRYARCLQRLGFKARFT-NFRVVNVLGTCSMPFAIRILQFSEKHRA 159
CTGA S++ + IA + L+ G T +V N++ T + + S R
Sbjct: 63 CTGAKSKEDAVIAINKVMEYLREAGLDLIDTPEVKVQNMVATAELGMEPNLDDLSTLERT 122
Query: 160 AEYEPELHPGVTYRITRPKATLKIFSTGGITVTAC 194
EYEPE PG+ YR+ PK L +F +G + +T
Sbjct: 123 -EYEPEQFPGLVYRMESPKVVLLVFGSGKVVITGL 156
Score = 40.0 bits (92), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 34/64 (53%)
Query: 131 TNFRVVNVLGTCSMPFAIRILQFSEKHRAAEYEPELHPGVTYRITRPKATLKIFSTGGIT 190
+ ++VNV+ + + I + ++ +EYEPE PG+ R++ PK L IF +G +
Sbjct: 3 SEIKIVNVVVSTKIGDDIDLEYVADVLDNSEYEPEQFPGLVCRLSDPKVALLIFRSGKLN 62
Query: 191 VTAC 194
T
Sbjct: 63 CTGA 66
>gi|19073311|gb|AAL84756.1|AF469636_1 TATA binding protein D [Halobacterium sp. GN101]
Length = 186
Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 48/163 (29%), Positives = 74/163 (45%), Gaps = 4/163 (2%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGA 104
I NVV S ++ L L Q+A + +Y E V +L P +T I+ SGK CTGA
Sbjct: 10 IENVVASSTLGAELALEQLAADLPGADYNPEEFPGVIYRLDDPPSTTLIFDSGKAVCTGA 69
Query: 105 TSEDQSKIAARRYARCLQRLGFK-ARFTNFRVVNVLGTCSM--PFAIRILQFSEKHRAAE 161
+ D A L+ LG A V N++ + + P + + A E
Sbjct: 70 QTVDDVHEALSIVVEDLRELGIDIAADPPVDVQNIVCSADLDQPLNLNAIAIGLGLEAIE 129
Query: 162 YEPELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKIPVQI 204
YEPE PG+ YR+ P + +F +G + +T +D + V +
Sbjct: 130 YEPEQFPGLVYRLDDPDVVVLLFGSGKLVITGGSDPDDATVAL 172
>gi|145591042|ref|YP_001153044.1| transcription factor [Pyrobaculum arsenaticum DSM 13514]
gi|379004488|ref|YP_005260160.1| TATA-box binding protein (TBP), component of TFIID and TFIIIB
[Pyrobaculum oguniense TE7]
gi|145282810|gb|ABP50392.1| TATA binding protein of transcription factor TFIID [Pyrobaculum
arsenaticum DSM 13514]
gi|375159941|gb|AFA39553.1| TATA-box binding protein (TBP), component of TFIID and TFIIIB
[Pyrobaculum oguniense TE7]
Length = 201
Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 45/158 (28%), Positives = 79/158 (50%), Gaps = 4/158 (2%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYRREN--GMVTMKLRKPYTTASIWSSGKITCTG 103
I N+V + +++ L+L +A EY + G++ ++L KP +A I+ +GK+ TG
Sbjct: 10 IENIVATVNLQVELDLEMLAERLAMAEYNPDQFPGLI-LRLTKPRISALIFRTGKMVATG 68
Query: 104 ATSEDQSKIAARRYARCLQRLGFKARFT-NFRVVNVLGTCSMPFAIRILQFSEKHRAAEY 162
A +E+ K A R + L+ G F +V N++ + ++ + + Q A Y
Sbjct: 69 AKNEEDLKNAVRALVKLLKDHGADVPFDPEVQVQNIVASGNLHAEVDLEQAVLMLENAMY 128
Query: 163 EPELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
EPE PG+ YR+T P+ + IF +G I T +
Sbjct: 129 EPEQFPGLIYRMTNPRVVILIFGSGKIVCTGAKSERDV 166
Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 58/126 (46%), Gaps = 8/126 (6%)
Query: 3 TAGMTTTHSSHSEQEPPPTQTVVPI-QNHAPPQPPAHDPEVDIIINNVVCSFSVRCHLNL 61
T M T + + E + +V + ++H P DPEV + N+V S ++ ++L
Sbjct: 61 TGKMVATGAKNEEDLKNAVRALVKLLKDHGADVP--FDPEVQV--QNIVASGNLHAEVDL 116
Query: 62 RQIALNGVNVEYRREN--GMVTMKLRKPYTTASIWSSGKITCTGATSEDQSKIAARRYAR 119
Q L N Y E G++ ++ P I+ SGKI CTGA SE A ++
Sbjct: 117 EQAVLMLENAMYEPEQFPGLI-YRMTNPRVVILIFGSGKIVCTGAKSERDVATAVQKLYN 175
Query: 120 CLQRLG 125
L+ LG
Sbjct: 176 QLKELG 181
Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 37/68 (54%)
Query: 133 FRVVNVLGTCSMPFAIRILQFSEKHRAAEYEPELHPGVTYRITRPKATLKIFSTGGITVT 192
+R+ N++ T ++ + + +E+ AEY P+ PG+ R+T+P+ + IF TG + T
Sbjct: 8 YRIENIVATVNLQVELDLEMLAERLAMAEYNPDQFPGLILRLTKPRISALIFRTGKMVAT 67
Query: 193 ACNDSNKI 200
+ +
Sbjct: 68 GAKNEEDL 75
>gi|448540133|ref|ZP_21623370.1| transcription factor [Haloferax sp. ATCC BAA-646]
gi|448551731|ref|ZP_21629465.1| transcription factor [Haloferax sp. ATCC BAA-645]
gi|448553994|ref|ZP_21630784.1| transcription factor [Haloferax sp. ATCC BAA-644]
gi|445710007|gb|ELZ61830.1| transcription factor [Haloferax sp. ATCC BAA-646]
gi|445710121|gb|ELZ61943.1| transcription factor [Haloferax sp. ATCC BAA-645]
gi|445719179|gb|ELZ70861.1| transcription factor [Haloferax sp. ATCC BAA-644]
Length = 188
Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 48/156 (30%), Positives = 73/156 (46%), Gaps = 6/156 (3%)
Query: 44 IIINNVVCSFSVRCHLNLRQIALNGVNVEYRREN--GMVTMKLRKPYTTASIWSSGKITC 101
I I NVV S V L+L +++L+ +Y EN G+V + R P + ++ SGK+ C
Sbjct: 10 IEIQNVVASTEVPVELDLERLSLDMNGTDYDPENFPGLV-YRTRNPKSACLVFRSGKVVC 68
Query: 102 TGATSEDQSKIAARRYARCLQRLGFKA-RFTNFRVVNVLGTCSMPFAIRI--LQFSEKHR 158
TGA S D A LG + V N++ + + A+ + L
Sbjct: 69 TGADSVDDVSTAIETLFDEFTELGIPIPDDPDITVQNIVSSADLGAALNLNALAIGLGLE 128
Query: 159 AAEYEPELHPGVTYRITRPKATLKIFSTGGITVTAC 194
A EYEPE PG+ YR+ P + +F +G I +T
Sbjct: 129 AVEYEPEQFPGLVYRLDEPSVVVLMFGSGKIVITGA 164
Score = 42.0 bits (97), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 17/73 (23%), Positives = 35/73 (47%)
Query: 132 NFRVVNVLGTCSMPFAIRILQFSEKHRAAEYEPELHPGVTYRITRPKATLKIFSTGGITV 191
+ + NV+ + +P + + + S +Y+PE PG+ YR PK+ +F +G +
Sbjct: 9 SIEIQNVVASTEVPVELDLERLSLDMNGTDYDPENFPGLVYRTRNPKSACLVFRSGKVVC 68
Query: 192 TACNDSNKIPVQI 204
T + + + I
Sbjct: 69 TGADSVDDVSTAI 81
>gi|14423942|sp|Q9P9I9.1|TBP_METTL RecName: Full=TATA-box-binding protein; AltName: Full=Box A-binding
protein; Short=BAP; AltName: Full=TATA sequence-binding
protein; Short=TBP; AltName: Full=TATA-box factor;
AltName: Full=aTBP
gi|6723836|emb|CAB66385.1| archaeal transcription factor TBP [Methanothermococcus
thermolithotrophicus]
Length = 181
Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 49/159 (30%), Positives = 78/159 (49%), Gaps = 7/159 (4%)
Query: 39 DPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYRREN--GMVTMKLRKPYTTASIWSS 96
+PE+ I+ NVV S + ++L A N EY E G+V +L P I+ S
Sbjct: 2 EPEIKIV--NVVVSTQIGTDIDLEYAADILDNAEYEPEQFPGLVC-RLSDPKVALLIFRS 58
Query: 97 GKITCTGATSEDQSKIAARRYARCLQRLGFKARFT-NFRVVNVLGTCSMPFAIRILQFSE 155
GK+ CTGA S++ ++IA ++ + L+ G V N++ T + + S
Sbjct: 59 GKLNCTGAKSKEDAEIAIKKIIKELKDAGMDIIDNPEVNVQNMVATADLGIEPNLDDIS- 117
Query: 156 KHRAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTAC 194
EYEPE PG+ YR++ PK + IF +G + +T
Sbjct: 118 TLEGTEYEPEQFPGLVYRLSDPKVVVLIFGSGKVVITGL 156
>gi|297527104|ref|YP_003669128.1| TATA-box binding family protein [Staphylothermus hellenicus DSM
12710]
gi|297256020|gb|ADI32229.1| TATA-box binding family protein [Staphylothermus hellenicus DSM
12710]
Length = 196
Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 85/162 (52%), Gaps = 4/162 (2%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYRREN--GMVTMKLRKPYTTASIWSSGKITCTG 103
I N+V + + L+L I NV Y+ + G++ ++L KP TTA I+ SGK+ TG
Sbjct: 17 IENIVATVIIDQSLDLNLIESRVPNVSYQPDQFPGLI-LRLEKPKTTALIFKSGKMVVTG 75
Query: 104 ATSEDQSKIAARRYARCLQRLGFK-ARFTNFRVVNVLGTCSMPFAIRILQFSEKHRAAEY 162
A S Q A ++ + L++ G K ++ N++ + + I + + + + Y
Sbjct: 76 AKSTQQLIDAVKKIIKLLRKYGIKIVSKPRIQIQNIVASGDINAYINLERAAYLLEDSMY 135
Query: 163 EPELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKIPVQI 204
EPE PG+ +R+ P+ L IFS+G + +T + +++ + +
Sbjct: 136 EPEQFPGLIHRMREPRVVLLIFSSGKMVITGAKEESEVEMAV 177
Score = 40.8 bits (94), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 40/75 (53%), Gaps = 3/75 (4%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYRREN--GMVTMKLRKPYTTASIWSSGKITCTG 103
I N+V S + ++NL + A + Y E G++ ++R+P I+SSGK+ TG
Sbjct: 108 IQNIVASGDINAYINLERAAYLLEDSMYEPEQFPGLIH-RMREPRVVLLIFSSGKMVITG 166
Query: 104 ATSEDQSKIAARRYA 118
A E + ++A R A
Sbjct: 167 AKEESEVEMAVRNIA 181
Score = 36.2 bits (82), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 15/67 (22%), Positives = 34/67 (50%)
Query: 134 RVVNVLGTCSMPFAIRILQFSEKHRAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTA 193
++ N++ T + ++ + + Y+P+ PG+ R+ +PK T IF +G + VT
Sbjct: 16 KIENIVATVIIDQSLDLNLIESRVPNVSYQPDQFPGLILRLEKPKTTALIFKSGKMVVTG 75
Query: 194 CNDSNKI 200
+ ++
Sbjct: 76 AKSTQQL 82
>gi|292494314|ref|YP_003533457.1| TATA-binding transcription initiation factor [Haloferax volcanii
DS2]
gi|448289408|ref|ZP_21480579.1| transcription factor [Haloferax volcanii DS2]
gi|291369097|gb|ADE01327.1| TATA-binding transcription initiation factor [Haloferax volcanii
DS2]
gi|445582489|gb|ELY36830.1| transcription factor [Haloferax volcanii DS2]
Length = 188
Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 48/156 (30%), Positives = 73/156 (46%), Gaps = 6/156 (3%)
Query: 44 IIINNVVCSFSVRCHLNLRQIALNGVNVEYRREN--GMVTMKLRKPYTTASIWSSGKITC 101
I I NVV S V L+L +++L+ +Y EN G+V + R P + ++ SGK+ C
Sbjct: 10 IEIQNVVASTEVPVELDLERLSLDMNGTDYDPENFPGLV-YRTRNPKSACLVFRSGKVVC 68
Query: 102 TGATSEDQSKIAARRYARCLQRLGFKA-RFTNFRVVNVLGTCSMPFAIRI--LQFSEKHR 158
TGA S D A LG + V N++ + + A+ + L
Sbjct: 69 TGADSVDDVSTAIETLFDEFTELGIPIPDDPDITVQNIVSSADLGAALNLNALAIGLGLE 128
Query: 159 AAEYEPELHPGVTYRITRPKATLKIFSTGGITVTAC 194
A EYEPE PG+ YR+ P + +F +G I +T
Sbjct: 129 AVEYEPEQFPGLVYRLDEPSVVVLMFGSGKIVITGV 164
Score = 41.6 bits (96), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 17/73 (23%), Positives = 35/73 (47%)
Query: 132 NFRVVNVLGTCSMPFAIRILQFSEKHRAAEYEPELHPGVTYRITRPKATLKIFSTGGITV 191
+ + NV+ + +P + + + S +Y+PE PG+ YR PK+ +F +G +
Sbjct: 9 SIEIQNVVASTEVPVELDLERLSLDMNGTDYDPENFPGLVYRTRNPKSACLVFRSGKVVC 68
Query: 192 TACNDSNKIPVQI 204
T + + + I
Sbjct: 69 TGADSVDDVSTAI 81
>gi|448568567|ref|ZP_21638101.1| transcription factor [Haloferax lucentense DSM 14919]
gi|445725917|gb|ELZ77535.1| transcription factor [Haloferax lucentense DSM 14919]
Length = 188
Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 48/156 (30%), Positives = 73/156 (46%), Gaps = 6/156 (3%)
Query: 44 IIINNVVCSFSVRCHLNLRQIALNGVNVEYRREN--GMVTMKLRKPYTTASIWSSGKITC 101
I I NVV S V L+L +++L+ +Y EN G+V + R P + ++ SGK+ C
Sbjct: 10 IEIQNVVASTEVPVELDLERLSLDMNGTDYDPENFPGLV-YRTRNPKSACLVFRSGKVVC 68
Query: 102 TGATSEDQSKIAARRYARCLQRLGFKA-RFTNFRVVNVLGTCSMPFAIRI--LQFSEKHR 158
TGA S D A LG + V N++ + + A+ + L
Sbjct: 69 TGADSVDDVSTAIETLFDEFTELGIPIPDDPDITVQNIVSSADLGAALNLNALAIGLGLE 128
Query: 159 AAEYEPELHPGVTYRITRPKATLKIFSTGGITVTAC 194
A EYEPE PG+ YR+ P + +F +G I +T
Sbjct: 129 AVEYEPEQFPGLVYRLDEPSVVVLMFGSGKIVITGA 164
Score = 41.6 bits (96), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 17/73 (23%), Positives = 35/73 (47%)
Query: 132 NFRVVNVLGTCSMPFAIRILQFSEKHRAAEYEPELHPGVTYRITRPKATLKIFSTGGITV 191
+ + NV+ + +P + + + S +Y+PE PG+ YR PK+ +F +G +
Sbjct: 9 SIEIQNVVASTEVPVELDLERLSLDMNGTDYDPENFPGLVYRTRNPKSACLVFRSGKVVC 68
Query: 192 TACNDSNKIPVQI 204
T + + + I
Sbjct: 69 TGADSVDDVSTAI 81
>gi|386875594|ref|ZP_10117754.1| transcription factor [Candidatus Nitrosopumilus salaria BD31]
gi|386806582|gb|EIJ66041.1| transcription factor [Candidatus Nitrosopumilus salaria BD31]
Length = 186
Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 44/153 (28%), Positives = 81/153 (52%), Gaps = 4/153 (2%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYRREN--GMVTMKLRKPYTTASIWSSGKITCTG 103
+ NVV S V ++L +I +VEY + G+V +L+ P T I++SGK+ CTG
Sbjct: 10 VENVVASADVMQKMDLNEITRTFPDVEYHPDQFPGLV-FRLKTPKTATLIFTSGKMVCTG 68
Query: 104 ATSEDQSKIAARRYARCLQRLGFKARFTNFRVV-NVLGTCSMPFAIRILQFSEKHRAAEY 162
+ SE+ ++ A + + L++ G K + + N++ + ++ I + Q + + Y
Sbjct: 69 SKSEEMARKAVKTVVQKLRKGGIKVKKDAVVTIQNIVASINLGGKIHLEQAARTLPRSMY 128
Query: 163 EPELHPGVTYRITRPKATLKIFSTGGITVTACN 195
EPE PG+ +R+ PK + +FS+G + T
Sbjct: 129 EPEQFPGLIHRMLDPKTVILLFSSGKLVCTGAK 161
>gi|448610180|ref|ZP_21661030.1| transcription factor [Haloferax mucosum ATCC BAA-1512]
gi|445745539|gb|ELZ97006.1| transcription factor [Haloferax mucosum ATCC BAA-1512]
Length = 189
Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 50/157 (31%), Positives = 73/157 (46%), Gaps = 12/157 (7%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYRREN--GMVTMKLRKPYTTASIWSSGKITCTG 103
I NVV S +V L+L ++++ V +Y +N G+V + + P + I+ SGKI CTG
Sbjct: 13 IQNVVASTAVGQELDLESLSMDLVGADYDPDNFPGLV-YRTQDPKAASLIFRSGKIVCTG 71
Query: 104 ATSEDQSKIAARRYARCLQRLGF------KARFTNFRVVNVLGTCSMPFAIRILQFSEKH 157
A+S D A + L +LG +A N LGT + L
Sbjct: 72 ASSVDDVDRALEQVFGELSKLGIPTDDREEATIQNIVSSADLGTT---LNLNALAIGLGL 128
Query: 158 RAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTAC 194
EYEPE PG+ YRI P + +F +G I +T
Sbjct: 129 EDVEYEPEQFPGLVYRIEDPSVVVLMFGSGKIVITGA 165
Score = 43.9 bits (102), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 37/74 (50%)
Query: 127 KARFTNFRVVNVLGTCSMPFAIRILQFSEKHRAAEYEPELHPGVTYRITRPKATLKIFST 186
+AR + + NV+ + ++ + + S A+Y+P+ PG+ YR PKA IF +
Sbjct: 5 EARLESLEIQNVVASTAVGQELDLESLSMDLVGADYDPDNFPGLVYRTQDPKAASLIFRS 64
Query: 187 GGITVTACNDSNKI 200
G I T + + +
Sbjct: 65 GKIVCTGASSVDDV 78
>gi|397780477|ref|YP_006544950.1| TATA-box-binding protein [Methanoculleus bourgensis MS2]
gi|396938979|emb|CCJ36234.1| TATA-box-binding protein AltName: Full=TATA-box factor
[Methanoculleus bourgensis MS2]
Length = 237
Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 48/167 (28%), Positives = 79/167 (47%), Gaps = 18/167 (10%)
Query: 38 HDPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYRRENG-MVTMKLRKPYTTASIWSS 96
H PE + I N+V S V L+L +A + EY ++ V ++++ P A ++ S
Sbjct: 54 HRPEESLKIENIVASAKVTDSLDLNSLASQLKDAEYNKKRFPGVVLRMQDPKIAALVFGS 113
Query: 97 GKITCTGATSEDQSKIAARRYARCLQRLGFKARFTN--------FRVVNVLGTCSM--PF 146
GK+ TGA S D +R LQ LG + R N ++V N++ + + P
Sbjct: 114 GKVVLTGAKSIDN-------LSRGLQILGDQLRALNIDIPENLTYKVQNIVTSADLGTPI 166
Query: 147 AIRILQFSEKHRAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTA 193
+ + EYEPE PG+ YR+ PK + +F +G + +T
Sbjct: 167 NLNKIAVGFNLDKIEYEPEQFPGLVYRLDDPKVVVLLFGSGKLIITG 213
>gi|433425962|ref|ZP_20406798.1| transcription factor [Haloferax sp. BAB2207]
gi|448594544|ref|ZP_21652891.1| transcription factor [Haloferax alexandrinus JCM 10717]
gi|432197431|gb|ELK53812.1| transcription factor [Haloferax sp. BAB2207]
gi|445744180|gb|ELZ95659.1| transcription factor [Haloferax alexandrinus JCM 10717]
Length = 188
Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 48/156 (30%), Positives = 73/156 (46%), Gaps = 6/156 (3%)
Query: 44 IIINNVVCSFSVRCHLNLRQIALNGVNVEYRREN--GMVTMKLRKPYTTASIWSSGKITC 101
I I NVV S V L+L +++L+ +Y EN G+V + R P + ++ SGK+ C
Sbjct: 10 IEIQNVVASTEVPVELDLERLSLDMNGTDYDPENFPGLV-YRTRNPKSACLVFRSGKVVC 68
Query: 102 TGATSEDQSKIAARRYARCLQRLGFKA-RFTNFRVVNVLGTCSMPFAIRI--LQFSEKHR 158
TGA S D A LG + V N++ + + A+ + L
Sbjct: 69 TGADSVDDVSTAIETLFDEFTELGIPIPDDPDVTVQNIVSSADLGAALNLNALAIGLGLE 128
Query: 159 AAEYEPELHPGVTYRITRPKATLKIFSTGGITVTAC 194
A EYEPE PG+ YR+ P + +F +G I +T
Sbjct: 129 AVEYEPEQFPGLVYRLDEPSVVVLMFGSGKIVITGA 164
Score = 41.6 bits (96), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 17/73 (23%), Positives = 35/73 (47%)
Query: 132 NFRVVNVLGTCSMPFAIRILQFSEKHRAAEYEPELHPGVTYRITRPKATLKIFSTGGITV 191
+ + NV+ + +P + + + S +Y+PE PG+ YR PK+ +F +G +
Sbjct: 9 SIEIQNVVASTEVPVELDLERLSLDMNGTDYDPENFPGLVYRTRNPKSACLVFRSGKVVC 68
Query: 192 TACNDSNKIPVQI 204
T + + + I
Sbjct: 69 TGADSVDDVSTAI 81
>gi|126466212|ref|YP_001041321.1| transcription factor [Staphylothermus marinus F1]
gi|126015035|gb|ABN70413.1| TATA binding protein of transcription factor TFIID [Staphylothermus
marinus F1]
Length = 196
Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 45/158 (28%), Positives = 83/158 (52%), Gaps = 4/158 (2%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYRREN--GMVTMKLRKPYTTASIWSSGKITCTG 103
I N+V + + L+L I NV Y+ + G++ ++L KP TTA I+ SGK+ TG
Sbjct: 17 IENIVATVILDQSLDLNLIESRVPNVSYQPDQFPGLI-LRLEKPKTTALIFKSGKMVVTG 75
Query: 104 ATSEDQSKIAARRYARCLQRLGFK-ARFTNFRVVNVLGTCSMPFAIRILQFSEKHRAAEY 162
A S Q A ++ + L++ G K ++ N++ + + I + + + + Y
Sbjct: 76 AKSTQQLIDAVKKIIKLLRKYGIKIVSKPRIQIQNIVASGDINAYINLERAAYLLEDSMY 135
Query: 163 EPELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
EPE PG+ +R+ P+ L IFS+G + +T + +++
Sbjct: 136 EPEQFPGLIHRMREPRVVLLIFSSGKMVITGAKEESEV 173
Score = 40.0 bits (92), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 39/75 (52%), Gaps = 3/75 (4%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYRREN--GMVTMKLRKPYTTASIWSSGKITCTG 103
I N+V S + ++NL + A + Y E G++ ++R+P I+SSGK+ TG
Sbjct: 108 IQNIVASGDINAYINLERAAYLLEDSMYEPEQFPGLIH-RMREPRVVLLIFSSGKMVITG 166
Query: 104 ATSEDQSKIAARRYA 118
A E + + A R A
Sbjct: 167 AKEESEVETAVRNIA 181
Score = 36.6 bits (83), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 15/67 (22%), Positives = 34/67 (50%)
Query: 134 RVVNVLGTCSMPFAIRILQFSEKHRAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTA 193
++ N++ T + ++ + + Y+P+ PG+ R+ +PK T IF +G + VT
Sbjct: 16 KIENIVATVILDQSLDLNLIESRVPNVSYQPDQFPGLILRLEKPKTTALIFKSGKMVVTG 75
Query: 194 CNDSNKI 200
+ ++
Sbjct: 76 AKSTQQL 82
>gi|407464492|ref|YP_006775374.1| 2-alkenal reductase [Candidatus Nitrosopumilus sp. AR2]
gi|407047680|gb|AFS82432.1| 2-alkenal reductase [Candidatus Nitrosopumilus sp. AR2]
Length = 186
Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 44/153 (28%), Positives = 81/153 (52%), Gaps = 4/153 (2%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYRREN--GMVTMKLRKPYTTASIWSSGKITCTG 103
+ NVV S V ++L +I +VEY + G+V +L+ P T I++SGK+ CTG
Sbjct: 10 VENVVASADVMQKMDLNEITRTFPDVEYHPDQFPGLV-FRLKTPKTATLIFTSGKMVCTG 68
Query: 104 ATSEDQSKIAARRYARCLQRLGFKARFTNFRVV-NVLGTCSMPFAIRILQFSEKHRAAEY 162
+ SE+ ++ A + + L++ G K + + N++ + ++ I + Q + + Y
Sbjct: 69 SKSEEMARKAVKTVVQKLRKGGIKVKKDAVVTIQNIVASINLGGKIHLEQAARTLPRSMY 128
Query: 163 EPELHPGVTYRITRPKATLKIFSTGGITVTACN 195
EPE PG+ +R+ PK + +FS+G + T
Sbjct: 129 EPEQFPGLIHRMLDPKTVILLFSSGKLVCTGAK 161
>gi|167522359|ref|XP_001745517.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163775866|gb|EDQ89488.1| predicted protein [Monosiga brevicollis MX1]
Length = 211
Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 49/172 (28%), Positives = 86/172 (50%), Gaps = 7/172 (4%)
Query: 28 QNHAPPQPPAHD--PEVDII--INNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTM 82
+N A P A D P I + NVV + +NL ++ N+EY R +
Sbjct: 13 ENSATSLPTATDVRPADGITPTVENVVATGYFSGKVNLAEVQKKTRNIEYNPRRFAACVI 72
Query: 83 KLRKPYTTASIWSSGKITCTGATSEDQSKIAARRYAR-CLQRLGFKARFTNFRVVNVLGT 141
+ + P++T ++SSGK+ G SE+Q++ A ++ ++R T F++ NV+G
Sbjct: 73 RNKLPHSTGLLFSSGKLVIMGCKSEEQAEQAWSKFQDIVIKRCNIAVTPTGFKIHNVVGK 132
Query: 142 CSMPFAIRILQFSEKH-RAAEYEPELHPGVTYRITRPKATLKIFSTGGITVT 192
+ F I + + +H + Y+PE PG+TYR+ P L +F +G + +T
Sbjct: 133 VDVGFKIDLHKLHMEHSKFVTYDPETFPGLTYRMQDPSVVLLVFHSGKVVLT 184
>gi|16120311|ref|NP_395899.1| transcription factor [Halobacterium sp. NRC-1]
gi|14423950|sp|Q9HHE9.1|TBPF_HALSA RecName: Full=TATA-box-binding protein F; AltName: Full=Box
A-binding protein F; Short=BAP F; AltName: Full=TATA
sequence-binding protein F; Short=TBP F; AltName:
Full=TATA-box factor F
gi|10584455|gb|AAG21034.1| transcription initiation factor IID [Halobacterium sp. NRC-1]
Length = 186
Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 48/157 (30%), Positives = 77/157 (49%), Gaps = 6/157 (3%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYRREN--GMVTMKLRKPYTTASIWSSGKITCTG 103
I NVV S + L L Q+A + EY E+ G+V +L++P + I+ SGK+ CTG
Sbjct: 10 IENVVASSDLGQELALDQLATDLDGAEYNPEDFPGVV-YRLQEPKSATLIFRSGKVVCTG 68
Query: 104 ATSEDQSKIAARRYARCLQRLGFKARFTN-FRVVNVLGTCSMPFAIRI--LQFSEKHRAA 160
A S D A L+ LG T +V N++ + S+ ++ + +
Sbjct: 69 AKSVDAVHDALEIVFDDLRELGIDVDSTPPVKVQNIVSSASLEQSLNLNAIAIGLGLEQI 128
Query: 161 EYEPELHPGVTYRITRPKATLKIFSTGGITVTACNDS 197
EYEPE PG+ YR+ P + +F +G + +T +S
Sbjct: 129 EYEPEQFPGLVYRLDDPDVVVLLFGSGKLVITGAAES 165
Score = 43.1 bits (100), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 31/64 (48%)
Query: 137 NVLGTCSMPFAIRILQFSEKHRAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTACND 196
NV+ + + + + Q + AEY PE PGV YR+ PK+ IF +G + T
Sbjct: 12 NVVASSDLGQELALDQLATDLDGAEYNPEDFPGVVYRLQEPKSATLIFRSGKVVCTGAKS 71
Query: 197 SNKI 200
+ +
Sbjct: 72 VDAV 75
>gi|352681411|ref|YP_004891935.1| Box A binding protein [Thermoproteus tenax Kra 1]
gi|269990956|emb|CAP46909.1| TATA-box binding protein [Thermoproteus tenax Kra 1]
gi|350274210|emb|CCC80855.1| TATA-box binding protein (Box A binding protein) (TBP)
[Thermoproteus tenax Kra 1]
Length = 203
Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 46/162 (28%), Positives = 79/162 (48%), Gaps = 4/162 (2%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYRREN--GMVTMKLRKPYTTASIWSSGKITCTG 103
I N+V + ++ L+L Q+A EY + G++ ++L +P +A I+ +GK+ CTG
Sbjct: 13 IENIVATVNLGVELDLEQLAERLPVAEYNPDQFPGLI-LRLTRPRISALIFRTGKMVCTG 71
Query: 104 ATSEDQSKIAARRYARCLQRLGFKARFT-NFRVVNVLGTCSMPFAIRILQFSEKHRAAEY 162
A +E K A + L G +V N++ + S+ + + Q + A Y
Sbjct: 72 AKNETDLKNAVHALVKLLNDNGADVPLNPEVQVQNIVASGSLNAEVDLEQAALLLDNAMY 131
Query: 163 EPELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKIPVQI 204
EPE PG+ YR+T P+ + IF +G I T + V +
Sbjct: 132 EPEQFPGLIYRMTEPRVVVLIFGSGKIVCTGAKSEKDVAVAV 173
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 57/125 (45%), Gaps = 6/125 (4%)
Query: 3 TAGMTTTHSSHSEQEPPPTQTVVPIQNHAPPQPPAHDPEVDIIINNVVCSFSVRCHLNLR 62
T M T + + +V + N P + PEV + N+V S S+ ++L
Sbjct: 64 TGKMVCTGAKNETDLKNAVHALVKLLNDNGADVPLN-PEVQV--QNIVASGSLNAEVDLE 120
Query: 63 QIALNGVNVEYRREN--GMVTMKLRKPYTTASIWSSGKITCTGATSEDQSKIAARRYARC 120
Q AL N Y E G++ ++ +P I+ SGKI CTGA SE +A +R
Sbjct: 121 QAALLLDNAMYEPEQFPGLI-YRMTEPRVVVLIFGSGKIVCTGAKSEKDVAVAVQRLYDR 179
Query: 121 LQRLG 125
L+ LG
Sbjct: 180 LKELG 184
Score = 47.0 bits (110), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 37/67 (55%)
Query: 134 RVVNVLGTCSMPFAIRILQFSEKHRAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTA 193
++ N++ T ++ + + Q +E+ AEY P+ PG+ R+TRP+ + IF TG + T
Sbjct: 12 KIENIVATVNLGVELDLEQLAERLPVAEYNPDQFPGLILRLTRPRISALIFRTGKMVCTG 71
Query: 194 CNDSNKI 200
+ +
Sbjct: 72 AKNETDL 78
>gi|147920361|ref|YP_685866.1| transcription factor [Methanocella arvoryzae MRE50]
gi|110621262|emb|CAJ36540.1| TATA-box binding protein E [Methanocella arvoryzae MRE50]
Length = 188
Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 46/155 (29%), Positives = 79/155 (50%), Gaps = 6/155 (3%)
Query: 44 IIINNVVCSFSVRCHLNLRQI--ALNGVNVEYRRENGMVTMKLRKPYTTASIWSSGKITC 101
I I NVV S ++ ++L+ + AL+G + + + G+V + + P T A I+ SGKI C
Sbjct: 11 ITIENVVASTAIGQEIDLKSVTLALDGADYDPEQFPGLV-YRTKDPKTAALIFRSGKIVC 69
Query: 102 TGATSEDQSKIAARRYARCLQRLGFK-ARFTNFRVVNVLGTCSMPFAIRI--LQFSEKHR 158
TGA S + ++ + + +G K A V N++ + + + + +
Sbjct: 70 TGAKSIEDVDRGLKKVFKKMDSVGIKVADNPEITVQNIVASADLGSVLNLNAIAIGLGLE 129
Query: 159 AAEYEPELHPGVTYRITRPKATLKIFSTGGITVTA 193
EYEPE PG+ YRI +PK + +F +G + VT
Sbjct: 130 NIEYEPEQFPGLVYRIDQPKVVVLLFGSGKLVVTG 164
Score = 41.6 bits (96), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 47/94 (50%), Gaps = 7/94 (7%)
Query: 37 AHDPEVDIIINNVVCSFSVRCHLNLRQIALN-GV-NVEYRREN--GMVTMKLRKPYTTAS 92
A +PE I + N+V S + LNL IA+ G+ N+EY E G+V ++ +P
Sbjct: 97 ADNPE--ITVQNIVASADLGSVLNLNAIAIGLGLENIEYEPEQFPGLV-YRIDQPKVVVL 153
Query: 93 IWSSGKITCTGATSEDQSKIAARRYARCLQRLGF 126
++ SGK+ TG ++ A R R L+ L
Sbjct: 154 LFGSGKLVVTGGKKPKDAEEAVDRIVRELEGLAL 187
>gi|124506045|ref|XP_001351620.1| transcription initiation factor TFiid, TATA-binding protein
[Plasmodium falciparum 3D7]
gi|23504547|emb|CAD51427.1| transcription initiation factor TFiid, TATA-binding protein
[Plasmodium falciparum 3D7]
Length = 327
Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 51/164 (31%), Positives = 93/164 (56%), Gaps = 12/164 (7%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYR--RENGMVTMKLRKPYTTASIWSSGKITCTG 103
I+N++ S ++ +NLR +A++ N EY + N ++ ++L KP TA I+ +G+I TG
Sbjct: 151 IHNIISSANLCIDINLRLVAVSIRNAEYNPSKINTLI-IRLNKPQCTALIFKNGRIMLTG 209
Query: 104 ATSEDQSKIAARRYARCLQRL-GFKARFTNFRVVNVLGT--CSMPFAIRILQFSEKHRAA 160
++ S + ++ A+ ++ + K +F NF++ N++ + C++P + +L K
Sbjct: 210 TRTKKDSIMGCKKIAKIIKIVTKDKVKFCNFKIENIIASANCNIPIRLEVLAHDHK-EYC 268
Query: 161 EYEPELHPGVTYRITRPKATLK----IFSTGGITVTACNDSNKI 200
YEPEL G+ YR +P + LK IF +G I +T C NK+
Sbjct: 269 NYEPELFAGLVYR-YKPTSNLKSVILIFVSGKIIITGCKSVNKL 311
>gi|359417767|ref|ZP_09209836.1| transcription factor [Candidatus Haloredivivus sp. G17]
gi|358031860|gb|EHK00695.1| transcription factor [Candidatus Haloredivivus sp. G17]
Length = 182
Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 47/154 (30%), Positives = 76/154 (49%), Gaps = 4/154 (2%)
Query: 43 DIIINNVVCSFSVRCHLNLRQIALNGVNVEYRREN--GMVTMKLRKPYTTASIWSSGKIT 100
DI I NVV S + L L +IA+ N EY E G+V +L P A ++ SGK+
Sbjct: 6 DIEIQNVVASATFNQRLPLDRIAIYLENTEYEPEQFPGLV-YRLENPKAAALLFGSGKVV 64
Query: 101 CTGATSEDQSKIAARRYARCLQRLGFKARFT-NFRVVNVLGTCSMPFAIRILQFSEKHRA 159
CTG S +Q+K A + L+ + + V N++ + + + + + + +
Sbjct: 65 CTGTKSPEQAKEATHKIIDELREADVEIDTKPDVTVQNIVASSQLEGTLNLNRIAFELVG 124
Query: 160 AEYEPELHPGVTYRITRPKATLKIFSTGGITVTA 193
EYEPE PG+ YR+ P+ +FS+G + T
Sbjct: 125 TEYEPEQFPGLVYRLDEPQVVFLLFSSGNLVCTG 158
Score = 46.6 bits (109), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 44/89 (49%), Gaps = 3/89 (3%)
Query: 39 DPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYRREN--GMVTMKLRKPYTTASIWSS 96
D + D+ + N+V S + LNL +IA V EY E G+V +L +P ++SS
Sbjct: 93 DTKPDVTVQNIVASSQLEGTLNLNRIAFELVGTEYEPEQFPGLV-YRLDEPQVVFLLFSS 151
Query: 97 GKITCTGATSEDQSKIAARRYARCLQRLG 125
G + CTG + + K + L+ +G
Sbjct: 152 GNLVCTGGRTYEDVKEGIAKLEENLKEIG 180
>gi|417904|sp|P32086.1|TBP_PLAFA RecName: Full=TATA-box-binding protein; AltName: Full=TATA
sequence-binding protein; AltName: Full=TATA-binding
factor; AltName: Full=TATA-box factor; AltName:
Full=Transcription initiation factor TFIID TBP subunit
gi|5911375|gb|AAD55768.1|AF177280_1 TATA-binding protein [Plasmodium falciparum]
gi|160700|gb|AAA29769.1| TATA-binding protein [Plasmodium falciparum]
gi|38194140|gb|AAR13208.1| TATA-binding protein [synthetic construct]
Length = 228
Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 51/164 (31%), Positives = 93/164 (56%), Gaps = 12/164 (7%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYR--RENGMVTMKLRKPYTTASIWSSGKITCTG 103
I+N++ S ++ +NLR +A++ N EY + N ++ ++L KP TA I+ +G+I TG
Sbjct: 52 IHNIISSANLCIDINLRLVAVSIRNAEYNPSKINTLI-IRLNKPQCTALIFKNGRIMLTG 110
Query: 104 ATSEDQSKIAARRYARCLQRL-GFKARFTNFRVVNVLGT--CSMPFAIRILQFSEKHRAA 160
++ S + ++ A+ ++ + K +F NF++ N++ + C++P + +L K
Sbjct: 111 TRTKKDSIMGCKKIAKIIKIVTKDKVKFCNFKIENIIASANCNIPIRLEVLAHDHK-EYC 169
Query: 161 EYEPELHPGVTYRITRPKATLK----IFSTGGITVTACNDSNKI 200
YEPEL G+ YR +P + LK IF +G I +T C NK+
Sbjct: 170 NYEPELFAGLVYR-YKPTSNLKSVILIFVSGKIIITGCKSVNKL 212
>gi|399578906|ref|ZP_10772650.1| hypothetical protein HSB1_46890 [Halogranum salarium B-1]
gi|399235932|gb|EJN56872.1| hypothetical protein HSB1_46890 [Halogranum salarium B-1]
Length = 189
Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 47/153 (30%), Positives = 74/153 (48%), Gaps = 6/153 (3%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYRREN--GMVTMKLRKPYTTASIWSSGKITCTG 103
I NVV S + + L Q+A++ +Y EN G+V +L+ P I+ SGKI CTG
Sbjct: 10 IENVVASTGIGTEIELEQLAMDLQGADYNPENFPGIV-YRLQDPKAATLIFRSGKIVCTG 68
Query: 104 ATSEDQSKIAARRYARCLQRLGFKARFTNFRVV-NVLGTCSMPFAIRI--LQFSEKHRAA 160
A S + A +R L+ LG +V N++ + + ++ + +
Sbjct: 69 AKSIEYVHAACQRVFDDLRTLGIDVDDDPEVIVQNIVASADLGDSLNLNAIAIGLGLENI 128
Query: 161 EYEPELHPGVTYRITRPKATLKIFSTGGITVTA 193
EYEPE PG+ YRI PK +F +G + +T
Sbjct: 129 EYEPEQFPGLVYRIDDPKVVALLFGSGKLVITG 161
Score = 43.9 bits (102), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 46/93 (49%), Gaps = 7/93 (7%)
Query: 38 HDPEVDIIINNVVCSFSVRCHLNLRQIALN-GV-NVEYRREN--GMVTMKLRKPYTTASI 93
DPEV I+ N+V S + LNL IA+ G+ N+EY E G+V ++ P A +
Sbjct: 95 DDPEV--IVQNIVASADLGDSLNLNAIAIGLGLENIEYEPEQFPGLV-YRIDDPKVVALL 151
Query: 94 WSSGKITCTGATSEDQSKIAARRYARCLQRLGF 126
+ SGK+ TG + +K A L LG
Sbjct: 152 FGSGKLVITGGKTPSDAKRAVTVIVERLTELGM 184
>gi|409723670|ref|ZP_11270812.1| transcription factor [Halococcus hamelinensis 100A6]
gi|448721517|ref|ZP_21704062.1| transcription factor [Halococcus hamelinensis 100A6]
gi|445791336|gb|EMA41977.1| transcription factor [Halococcus hamelinensis 100A6]
Length = 192
Score = 73.9 bits (180), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 46/154 (29%), Positives = 72/154 (46%), Gaps = 6/154 (3%)
Query: 46 INNVVCSFSVRCHLNLRQIA--LNGVNVEYRRENGMVTMKLRKPYTTASIWSSGKITCTG 103
I NVV S ++ ++L + L GV+ + + G++ ++ +P+ TA I+ SGK+ CTG
Sbjct: 16 IQNVVASSAIGQEIDLEALVTDLEGVDFDPEQFPGLI-YRIEEPHATALIFRSGKLVCTG 74
Query: 104 ATSEDQSKIAARRYARCLQRLGFKARFT-NFRVVNVL--GTCSMPFAIRILQFSEKHRAA 160
A S D A L LG + V N++ G + + A
Sbjct: 75 ADSVDGVHEALASTFETLSNLGLRVNDNPTITVQNIVVSGDLGATLNLNAIAIGLGLEAI 134
Query: 161 EYEPELHPGVTYRITRPKATLKIFSTGGITVTAC 194
EYEPE PG+ YR+ PK +F +G +T C
Sbjct: 135 EYEPEQFPGLVYRLEEPKVVALLFGSGKTVITGC 168
>gi|126459691|ref|YP_001055969.1| transcription factor [Pyrobaculum calidifontis JCM 11548]
gi|166227823|sp|A3MV36.1|TBP_PYRCJ RecName: Full=TATA-box-binding protein; AltName: Full=Box A-binding
protein; Short=BAP; AltName: Full=TATA sequence-binding
protein; Short=TBP; AltName: Full=TATA-box factor
gi|126249412|gb|ABO08503.1| TATA binding protein of transcription factor TFIID [Pyrobaculum
calidifontis JCM 11548]
Length = 199
Score = 73.9 bits (180), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 44/158 (27%), Positives = 79/158 (50%), Gaps = 4/158 (2%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYRREN--GMVTMKLRKPYTTASIWSSGKITCTG 103
I N+V + ++ L+L +A EY + G++ ++L KP +A I+ +GK+ CTG
Sbjct: 10 IENIVATVNLGVELDLESLAERLPMAEYNPDQFPGLI-LRLTKPRISALIFRTGKMVCTG 68
Query: 104 ATSEDQSKIAARRYARCLQRLGFKARFT-NFRVVNVLGTCSMPFAIRILQFSEKHRAAEY 162
A +E+ K A R + L G + F ++ N++ + ++ + + Q A Y
Sbjct: 69 AKNEEDLKNAVRALVKLLNDHGAEVPFDPEVQIQNIVASGNLHAEVDLEQAVFMLENAMY 128
Query: 163 EPELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
EPE PG+ YR++ P+ + IF +G I T +
Sbjct: 129 EPEQFPGLIYRMSSPRVVILIFGSGKIVCTGAKSEKDV 166
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 56/125 (44%), Gaps = 6/125 (4%)
Query: 3 TAGMTTTHSSHSEQEPPPTQTVVPIQNHAPPQPPAHDPEVDIIINNVVCSFSVRCHLNLR 62
T M T + + E + +V + N + P DPEV I N+V S ++ ++L
Sbjct: 61 TGKMVCTGAKNEEDLKNAVRALVKLLNDHGAEVP-FDPEVQI--QNIVASGNLHAEVDLE 117
Query: 63 QIALNGVNVEYRREN--GMVTMKLRKPYTTASIWSSGKITCTGATSEDQSKIAARRYARC 120
Q N Y E G++ ++ P I+ SGKI CTGA SE A ++
Sbjct: 118 QAVFMLENAMYEPEQFPGLIY-RMSSPRVVILIFGSGKIVCTGAKSEKDVATAVQKLYNQ 176
Query: 121 LQRLG 125
L+ LG
Sbjct: 177 LKELG 181
Score = 45.8 bits (107), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 38/69 (55%)
Query: 132 NFRVVNVLGTCSMPFAIRILQFSEKHRAAEYEPELHPGVTYRITRPKATLKIFSTGGITV 191
++R+ N++ T ++ + + +E+ AEY P+ PG+ R+T+P+ + IF TG +
Sbjct: 7 SYRIENIVATVNLGVELDLESLAERLPMAEYNPDQFPGLILRLTKPRISALIFRTGKMVC 66
Query: 192 TACNDSNKI 200
T + +
Sbjct: 67 TGAKNEEDL 75
>gi|150400012|ref|YP_001323779.1| transcription factor [Methanococcus vannielii SB]
gi|166227822|sp|A6URP5.1|TBP_METVS RecName: Full=TATA-box-binding protein; AltName: Full=Box A-binding
protein; Short=BAP; AltName: Full=TATA sequence-binding
protein; Short=TBP; AltName: Full=TATA-box factor
gi|150012715|gb|ABR55167.1| TATA-box binding [Methanococcus vannielii SB]
Length = 181
Score = 73.9 bits (180), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 50/159 (31%), Positives = 80/159 (50%), Gaps = 9/159 (5%)
Query: 39 DPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYRREN--GMVTMKLRKPYTTASIWSS 96
+PE+ I+ NVV S + ++L A N EY E G+V +L P I+ S
Sbjct: 2 EPEIKIV--NVVVSTQIGTDIDLEYAADILDNAEYEPEQFPGLVC-RLSDPKVALLIFRS 58
Query: 97 GKITCTGATSEDQSKIAARRYARCLQRLGFKARFTN--FRVVNVLGTCSMPFAIRILQFS 154
GK+ CTGA S++ ++IA ++ + L+ G + N V N++ T + + S
Sbjct: 59 GKLNCTGAKSKEDAEIAIKKIIKELKEAGMEI-IDNPVVSVQNMVATTELGMEPNLDDIS 117
Query: 155 EKHRAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTA 193
EYEPE PG+ YR++ PK + IF +G + +T
Sbjct: 118 -TLECTEYEPEQFPGLVYRLSDPKVVVLIFGSGKVVITG 155
Score = 40.4 bits (93), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 35/73 (47%)
Query: 132 NFRVVNVLGTCSMPFAIRILQFSEKHRAAEYEPELHPGVTYRITRPKATLKIFSTGGITV 191
++VNV+ + + I + ++ AEYEPE PG+ R++ PK L IF +G +
Sbjct: 4 EIKIVNVVVSTQIGTDIDLEYAADILDNAEYEPEQFPGLVCRLSDPKVALLIFRSGKLNC 63
Query: 192 TACNDSNKIPVQI 204
T + I
Sbjct: 64 TGAKSKEDAEIAI 76
>gi|429193145|ref|YP_007178823.1| TATA-box binding protein [Natronobacterium gregoryi SP2]
gi|448327012|ref|ZP_21516352.1| transcription factor [Natronobacterium gregoryi SP2]
gi|429137363|gb|AFZ74374.1| TATA-box binding protein (TBP), component of TFIID and TFIIIB
[Natronobacterium gregoryi SP2]
gi|445609541|gb|ELY63341.1| transcription factor [Natronobacterium gregoryi SP2]
Length = 185
Score = 73.9 bits (180), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 49/159 (30%), Positives = 72/159 (45%), Gaps = 5/159 (3%)
Query: 39 DPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYRREN--GMVTMKLRKPYTTASIWSS 96
DP+ I I NVV S + L+L +A++ VEY E G V ++ P ++ S
Sbjct: 3 DPKETITIENVVASTGIGQELDLGPVAMDLEGVEYDPELFPGAV-YRIDDPKAALLLFRS 61
Query: 97 GKITCTGATSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRI--LQFS 154
GKI CTGA S D + A L+ L V N++ + + + + +
Sbjct: 62 GKIVCTGAKSTDDMRRAVEIVFEKLRDLSIPVEPDGVTVQNIVSSADLGHHLNLNAIAIG 121
Query: 155 EKHRAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTA 193
EYEPE PG+ YRI P L +F +G I +T
Sbjct: 122 LGLENIEYEPEQFPGLVYRIDDPDVVLLLFGSGKIVITG 160
Score = 44.7 bits (104), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 32/64 (50%)
Query: 137 NVLGTCSMPFAIRILQFSEKHRAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTACND 196
NV+ + + + + + EY+PEL PG YRI PKA L +F +G I T
Sbjct: 12 NVVASTGIGQELDLGPVAMDLEGVEYDPELFPGAVYRIDDPKAALLLFRSGKIVCTGAKS 71
Query: 197 SNKI 200
++ +
Sbjct: 72 TDDM 75
Score = 42.4 bits (98), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 43/87 (49%), Gaps = 5/87 (5%)
Query: 44 IIINNVVCSFSVRCHLNLRQIALN-GV-NVEYRREN--GMVTMKLRKPYTTASIWSSGKI 99
+ + N+V S + HLNL IA+ G+ N+EY E G+V ++ P ++ SGKI
Sbjct: 98 VTVQNIVSSADLGHHLNLNAIAIGLGLENIEYEPEQFPGLV-YRIDDPDVVLLLFGSGKI 156
Query: 100 TCTGATSEDQSKIAARRYARCLQRLGF 126
TG D ++ A + L LG
Sbjct: 157 VITGGEQPDDAEQAVGQVRNRLGELGL 183
>gi|448581629|ref|ZP_21645410.1| transcription factor [Haloferax gibbonsii ATCC 33959]
gi|445733392|gb|ELZ84962.1| transcription factor [Haloferax gibbonsii ATCC 33959]
Length = 188
Score = 73.6 bits (179), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 46/156 (29%), Positives = 72/156 (46%), Gaps = 6/156 (3%)
Query: 44 IIINNVVCSFSVRCHLNLRQIALNGVNVEYRREN--GMVTMKLRKPYTTASIWSSGKITC 101
I I NVV S V L+L +++L+ +Y EN G+V + R P + ++ SGK+ C
Sbjct: 10 IEIQNVVASTEVPVELDLERLSLDMDGTDYDPENFPGLV-YRTRDPKSACLVFRSGKVVC 68
Query: 102 TGATSEDQSKIAARRYARCLQRLGFKA-RFTNFRVVNVLGTCSMPFAIRI--LQFSEKHR 158
TGA S D A LG + V N++ + + A+ + L
Sbjct: 69 TGADSVDDVGTAIETLFDEFTDLGVPVPEDADITVQNIVSSADLGAALNLNALAIGLGLE 128
Query: 159 AAEYEPELHPGVTYRITRPKATLKIFSTGGITVTAC 194
EYEPE PG+ YR+ P + +F +G + +T
Sbjct: 129 DVEYEPEQFPGLVYRLDEPSVVVLMFGSGKVVITGA 164
Score = 41.6 bits (96), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 17/73 (23%), Positives = 35/73 (47%)
Query: 132 NFRVVNVLGTCSMPFAIRILQFSEKHRAAEYEPELHPGVTYRITRPKATLKIFSTGGITV 191
+ + NV+ + +P + + + S +Y+PE PG+ YR PK+ +F +G +
Sbjct: 9 SIEIQNVVASTEVPVELDLERLSLDMDGTDYDPENFPGLVYRTRDPKSACLVFRSGKVVC 68
Query: 192 TACNDSNKIPVQI 204
T + + + I
Sbjct: 69 TGADSVDDVGTAI 81
Score = 41.6 bits (96), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 46/90 (51%), Gaps = 5/90 (5%)
Query: 41 EVDIIINNVVCSFSVRCHLNLRQIALN-GV-NVEYRREN--GMVTMKLRKPYTTASIWSS 96
+ DI + N+V S + LNL +A+ G+ +VEY E G+V +L +P ++ S
Sbjct: 98 DADITVQNIVSSADLGAALNLNALAIGLGLEDVEYEPEQFPGLV-YRLDEPSVVVLMFGS 156
Query: 97 GKITCTGATSEDQSKIAARRYARCLQRLGF 126
GK+ TGA ++ A + ++ LG
Sbjct: 157 GKVVITGAKRTTDAEAALKTVDEDVRELGL 186
>gi|14423943|sp|Q9UWN7.1|TBP_SULAC RecName: Full=TATA-box-binding protein; AltName: Full=Box A-binding
protein; Short=BAP; AltName: Full=TATA sequence-binding
protein; Short=TBP; AltName: Full=TATA-box factor
gi|6578935|gb|AAF18138.1|AF205428_1 TATA-box binding protein [Sulfolobus acidocaldarius]
Length = 197
Score = 73.6 bits (179), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 42/158 (26%), Positives = 82/158 (51%), Gaps = 4/158 (2%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYRREN--GMVTMKLRKPYTTASIWSSGKITCTG 103
I N+V + ++ L+L + + NVEY + G++ +L P T+ I+ SGK+ TG
Sbjct: 14 IENIVATVTLDQTLDLYAMERSVPNVEYDPDQFPGLI-FRLESPKITSLIFKSGKMVVTG 72
Query: 104 ATSEDQSKIAARRYARCLQRLGFKARFT-NFRVVNVLGTCSMPFAIRILQFSEKHRAAEY 162
A S D+ A +R + L++ G + ++ N++ + ++ + + + + Y
Sbjct: 73 AKSTDELIKAVKRIIKTLKKYGMQLTGKPKIQIQNIVASANLHVIVNLDKAAFLLENNMY 132
Query: 163 EPELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
EPE PG+ YR+ P+ L IFS+G + +T +++
Sbjct: 133 EPEQFPGLIYRMDEPRVVLLIFSSGKMVITGAKREDEV 170
>gi|367044928|ref|XP_003652844.1| hypothetical protein THITE_2046631 [Thielavia terrestris NRRL 8126]
gi|347000106|gb|AEO66508.1| hypothetical protein THITE_2046631 [Thielavia terrestris NRRL 8126]
Length = 224
Score = 73.6 bits (179), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 49/167 (29%), Positives = 90/167 (53%), Gaps = 26/167 (15%)
Query: 46 INNVVCSFSVRCHLNL------------RQIALNGVNVEYRRENGMVTMKLRKPYTTASI 93
I NVV + ++ C L+L R+ + + M++R+P TT +
Sbjct: 48 IQNVVATVNLDCRLDLTLIAQQARNVEYRRKKFHA-----------LVMRIREPRTTTLV 96
Query: 94 WSSGKITCTGATSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQF 153
++SG++ GA S + +++AARR+AR +Q+ GF+ RF +F V N +G+ + F IR+
Sbjct: 97 FASGRMVVAGAKSAELARLAARRHARAIQKCGFRTRFRDFAVQNFVGSAACGFPIRLEGI 156
Query: 154 SEKH-RAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTA--CNDS 197
+ ++ A +EPE+ PG+ + + +P +F+TG + +T C D
Sbjct: 157 ARQYWEWARHEPEIFPGLVFTVQKPSLKCLVFTTGKVVLTGAKCEDD 203
>gi|38492428|pdb|1MP9|A Chain A, Tbp From A Mesothermophilic Archaeon, Sulfolobus
Acidocaldarius
gi|38492429|pdb|1MP9|B Chain B, Tbp From A Mesothermophilic Archaeon, Sulfolobus
Acidocaldarius
gi|1419209|emb|CAA64405.1| box A binding protein (BAP) [Sulfolobus acidocaldarius]
Length = 198
Score = 73.6 bits (179), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 42/158 (26%), Positives = 82/158 (51%), Gaps = 4/158 (2%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYRREN--GMVTMKLRKPYTTASIWSSGKITCTG 103
I N+V + ++ L+L + + NVEY + G++ +L P T+ I+ SGK+ TG
Sbjct: 15 IENIVATVTLDQTLDLYAMERSVPNVEYDPDQFPGLI-FRLESPKITSLIFKSGKMVVTG 73
Query: 104 ATSEDQSKIAARRYARCLQRLGFKARFT-NFRVVNVLGTCSMPFAIRILQFSEKHRAAEY 162
A S D+ A +R + L++ G + ++ N++ + ++ + + + + Y
Sbjct: 74 AKSTDELIKAVKRIIKTLKKYGMQLTGKPKIQIQNIVASANLHVIVNLDKAAFLLENNMY 133
Query: 163 EPELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
EPE PG+ YR+ P+ L IFS+G + +T +++
Sbjct: 134 EPEQFPGLIYRMDEPRVVLLIFSSGKMVITGAKREDEV 171
>gi|310752315|gb|ADP09476.1| TATA-box binding protein [uncultured marine crenarchaeote E48-1C]
Length = 186
Score = 73.6 bits (179), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 46/163 (28%), Positives = 85/163 (52%), Gaps = 4/163 (2%)
Query: 41 EVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYRREN--GMVTMKLRKPYTTASIWSSGK 98
E I I NVV S ++ ++L + + VEYR E G+V +L++P T I++SGK
Sbjct: 5 EAVIKIENVVASATLNQKVDLNAVVKSYPIVEYRPEQFPGLV-FRLKRPKTATLIFNSGK 63
Query: 99 ITCTGATSEDQSKIAARRYARCLQRLGFKARFT-NFRVVNVLGTCSMPFAIRILQFSEKH 157
+ CTGA SE +++ A ++ + L++ G ++ N++ + ++ I + +
Sbjct: 64 MVCTGAKSEKEARRAVKKVIKELKKGGIIIIGKPELKIQNIVASANLGGMIDLEASTLSL 123
Query: 158 RAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
+ YEPE PG+ YR+ PK + +F++G + T +
Sbjct: 124 KKTMYEPEQFPGLIYRMAEPKVVILLFASGKLVCTGAKREQNV 166
>gi|24638240|sp|Q971V3.2|TBP_SULTO RecName: Full=TATA-box-binding protein; AltName: Full=Box A-binding
protein; Short=BAP; AltName: Full=TATA sequence-binding
protein; Short=TBP; AltName: Full=TATA-box factor
Length = 198
Score = 73.6 bits (179), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 43/158 (27%), Positives = 81/158 (51%), Gaps = 4/158 (2%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYRREN--GMVTMKLRKPYTTASIWSSGKITCTG 103
I N+V + ++ +L+L + + NVEY + G++ +L P T+ I+ SGK+ TG
Sbjct: 15 IENIVATVTLDQNLDLYAMERSVPNVEYDPDQFPGLI-FRLEAPKVTSLIFKSGKMVVTG 73
Query: 104 ATSEDQSKIAARRYARCLQRLGFKARFT-NFRVVNVLGTCSMPFAIRILQFSEKHRAAEY 162
A S D+ A +R + L+R G ++ N++ + ++ + + + + Y
Sbjct: 74 AKSTDELIKAVKRIIKTLKRYGMNLTGKPKIQIQNIVASANLHVIVNLDKAAFLLENNMY 133
Query: 163 EPELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
EPE PG+ YR+ P+ L IFS+G + +T ++
Sbjct: 134 EPEQFPGLIYRMEDPRVVLLIFSSGKMVITGAKREEEV 171
>gi|424811982|ref|ZP_18237222.1| TATA binding protein of transcription factor TFIID [Candidatus
Nanosalinarum sp. J07AB56]
gi|339756204|gb|EGQ39787.1| TATA binding protein of transcription factor TFIID [Candidatus
Nanosalinarum sp. J07AB56]
Length = 187
Score = 73.2 bits (178), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 47/154 (30%), Positives = 78/154 (50%), Gaps = 4/154 (2%)
Query: 43 DIIINNVVCSFSVRCHLNLRQIALNGVNVEYRREN--GMVTMKLRKPYTTASIWSSGKIT 100
+I I NVV S ++ + L +IA+ N EY E G+V +L +P A ++ SGK+
Sbjct: 11 NIKIENVVASTTLDRRMPLDRIAIYLENTEYEPEQFPGLV-YRLDEPKAAALLFGSGKVV 69
Query: 101 CTGATSEDQSKIAARRYARCLQRLGFK-ARFTNFRVVNVLGTCSMPFAIRILQFSEKHRA 159
CTG S Q+K A + L+ + + + V N++ + + + + + + +
Sbjct: 70 CTGTQSPTQAKEAVHKIIDELREADIEIGKKPDITVQNMVASSELDATLNLNRIAFELVG 129
Query: 160 AEYEPELHPGVTYRITRPKATLKIFSTGGITVTA 193
EYEPE PG+ YR+ PK +FS+G I T
Sbjct: 130 TEYEPEQFPGLVYRLDEPKVVFLLFSSGRIVCTG 163
Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 43/85 (50%), Gaps = 3/85 (3%)
Query: 43 DIIINNVVCSFSVRCHLNLRQIALNGVNVEYRREN--GMVTMKLRKPYTTASIWSSGKIT 100
DI + N+V S + LNL +IA V EY E G+V +L +P ++SSG+I
Sbjct: 102 DITVQNMVASSELDATLNLNRIAFELVGTEYEPEQFPGLV-YRLDEPKVVFLLFSSGRIV 160
Query: 101 CTGATSEDQSKIAARRYARCLQRLG 125
CTG + D + + L+ LG
Sbjct: 161 CTGGKTYDDVENGIEKLKENLKELG 185
>gi|219851944|ref|YP_002466376.1| transcription factor [Methanosphaerula palustris E1-9c]
gi|219546203|gb|ACL16653.1| TATA-box binding family protein [Methanosphaerula palustris E1-9c]
Length = 186
Score = 73.2 bits (178), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 48/159 (30%), Positives = 79/159 (49%), Gaps = 6/159 (3%)
Query: 40 PEVDIIINNVVCSFSVRCHLNLRQIA--LNGVNVEYRRENGMVTMKLRKPYTTASIWSSG 97
PE + I N+V S V HL+L IA L G + +R G+V ++++ P A +++SG
Sbjct: 5 PEDSLKIENIVASAKVTDHLDLPAIASQLEGAEYDKKRFPGVV-IRIKDPKIAALVFNSG 63
Query: 98 KITCTGATSEDQSKIAARRYARCLQRLGFKARFT-NFRVVNVLGTCSMPFAIRI--LQFS 154
K+ TGA S D + L+ +G + T + V N++ + + I + +
Sbjct: 64 KVVLTGAKSIDILDRGIALLSDMLRAIGVEIDGTPTYTVQNIVTSADLGSTINLNKIAVG 123
Query: 155 EKHRAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTA 193
EYEPE PG+ YR+ PK L +F +G + +T
Sbjct: 124 FNLNKIEYEPEQFPGLVYRLDDPKVVLLLFGSGKMIITG 162
>gi|432331260|ref|YP_007249403.1| TATA-box binding protein (TBP), component of TFIID and TFIIIB
[Methanoregula formicicum SMSP]
gi|432137969|gb|AGB02896.1| TATA-box binding protein (TBP), component of TFIID and TFIIIB
[Methanoregula formicicum SMSP]
Length = 186
Score = 73.2 bits (178), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 48/173 (27%), Positives = 86/173 (49%), Gaps = 9/173 (5%)
Query: 40 PEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYRREN--GMVTMKLRKPYTTASIWSSG 97
PE + I N+V S V +L+L +A + EY ++ G+V ++++ P A ++ SG
Sbjct: 5 PEDSLKIENIVASAKVTDYLDLPALASRIKDAEYNKKRFPGVV-LRMQDPKIAALVFGSG 63
Query: 98 KITCTGATSEDQSKIAARRYARCLQRLGFKA-RFTNFRVVNVLGTCSMPFAIRILQFSEK 156
K+ TGA S D L++L + N+++ N++ + + AI + + +
Sbjct: 64 KVVLTGAKSIDSLSKGLNILGNLLRKLDIDIPKKLNYKIQNIVTSADLATAINLNKIAVG 123
Query: 157 HRA--AEYEPELHPGVTYRITRPKATLKIFSTGGITVTACN---DSNKIPVQI 204
EYEPE PG+ YR+ PK + +F +G + +T D+ K V+I
Sbjct: 124 FNLDRIEYEPEQFPGLVYRLDNPKVVVLLFGSGKLIITGGKEPEDAKKAVVKI 176
>gi|326432016|gb|EGD77586.1| hypothetical protein PTSG_08683 [Salpingoeca sp. ATCC 50818]
Length = 185
Score = 72.8 bits (177), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 39/154 (25%), Positives = 72/154 (46%), Gaps = 39/154 (25%)
Query: 48 NVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGATS 106
N+V + ++ HL+L+ I L+ N EY + V M++R P TTA ++++GK+ CTGA S
Sbjct: 53 NIVATVNLATHLDLKHITLSVRNAEYSPKRFSAVVMRIRSPRTTALVFATGKLICTGAKS 112
Query: 107 EDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKHRAAEYEPEL 166
+ + + AR++A+ ++++GF L
Sbjct: 113 TEDAYVGARKFAKIIKKIGF--------------------------------------SL 134
Query: 167 HPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
PG+ +R+ P+ + IF +G + +T I
Sbjct: 135 FPGLIFRMADPRVVVLIFVSGKLVITGAKSHEDI 168
>gi|295862189|gb|ADG54819.1| CG18009 [Drosophila teissieri]
Length = 240
Score = 72.8 bits (177), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 37/72 (51%), Positives = 47/72 (65%), Gaps = 4/72 (5%)
Query: 5 GMTTTHSSHSEQEPPPTQTVVPIQNHAPPQPPAHD--PEVDIIINNVVCSFSVRCHLNLR 62
G ++ ++ S + P Q + QN+A + A D PE+DI+INNVVCSFSV CHL LR
Sbjct: 171 GESSNNAKSSGDQQPENQPMT--QNNAANEGNASDDEPELDIVINNVVCSFSVGCHLKLR 228
Query: 63 QIALNGVNVEYR 74
IAL G NVEYR
Sbjct: 229 DIALQGSNVEYR 240
>gi|257076321|ref|ZP_05570682.1| transcription factor [Ferroplasma acidarmanus fer1]
Length = 184
Score = 72.4 bits (176), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 48/162 (29%), Positives = 78/162 (48%), Gaps = 6/162 (3%)
Query: 44 IIINNVVCSFSVRCHLNLRQIALNGVNVEYRREN--GMVTMKLRKPYTTASIWSSGKITC 101
I I N+V S S+ HL+L +IAL EY E G++ +L+ P T I+ SGK+ C
Sbjct: 7 ITIENIVASTSLAEHLDLSRIALALEGSEYEPEQFPGLI-YRLKDPKTAVLIFRSGKVNC 65
Query: 102 TGATSEDQSKIAARRYARCLQRLGFKARFT-NFRVVNVLGTCSMPFAIRI--LQFSEKHR 158
TGA + + K L++ + + V N++ + + + + S
Sbjct: 66 TGAKNLENVKKTIDIIIDKLKKAKIEVYDNPDIIVQNIVAVYDLESDLNLTDIAMSLGLE 125
Query: 159 AAEYEPELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
EYEPE PG+ YR+ PK L +F +G + T + ++I
Sbjct: 126 NVEYEPEQFPGLVYRVEEPKVVLLLFGSGKVVCTGAKEESEI 167
Score = 55.8 bits (133), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 51/88 (57%), Gaps = 5/88 (5%)
Query: 43 DIIINNVVCSFSVRCHLNLRQIALN-GV-NVEYRREN--GMVTMKLRKPYTTASIWSSGK 98
DII+ N+V + + LNL IA++ G+ NVEY E G+V ++ +P ++ SGK
Sbjct: 97 DIIVQNIVAVYDLESDLNLTDIAMSLGLENVEYEPEQFPGLV-YRVEEPKVVLLLFGSGK 155
Query: 99 ITCTGATSEDQSKIAARRYARCLQRLGF 126
+ CTGA E + + A + + LQ++G
Sbjct: 156 VVCTGAKEESEIEQAVIKVKKELQKVGL 183
>gi|288931352|ref|YP_003435412.1| TATA-box binding family protein [Ferroglobus placidus DSM 10642]
gi|288893600|gb|ADC65137.1| TATA-box binding family protein [Ferroglobus placidus DSM 10642]
Length = 183
Score = 72.4 bits (176), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 42/155 (27%), Positives = 81/155 (52%), Gaps = 6/155 (3%)
Query: 44 IIINNVVCSFSVRCHLNLRQIALNGVNVEYRREN--GMVTMKLRKPYTTASIWSSGKITC 101
I I NVV S + +++L +IA + EY+ + G+V ++ + P A ++ SGK+ C
Sbjct: 6 IKIENVVASTQIGENIDLNKIAREIKDAEYKPKQFPGLV-LRTKDPKAAALVFRSGKVVC 64
Query: 102 TGATSEDQSKIAARRYARCLQRLGFKARFT-NFRVVNVLGTCSMPFAIRI--LQFSEKHR 158
TG+ S + ++ A ++ ++ LG + + RV N++ + + + + +
Sbjct: 65 TGSKSVEDARRAVKQVVNIIKSLGIEVYDDPDVRVQNIVASADLGVDLNLNAIAVGLGLE 124
Query: 159 AAEYEPELHPGVTYRITRPKATLKIFSTGGITVTA 193
EYEPE PG+ YR+ P+ + IF +G + +T
Sbjct: 125 NIEYEPEQFPGLVYRLRDPRVVVLIFGSGKMVITG 159
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 46/93 (49%), Gaps = 7/93 (7%)
Query: 38 HDPEVDIIINNVVCSFSVRCHLNLRQIA--LNGVNVEYRREN--GMVTMKLRKPYTTASI 93
DP D+ + N+V S + LNL IA L N+EY E G+V +LR P I
Sbjct: 93 DDP--DVRVQNIVASADLGVDLNLNAIAVGLGLENIEYEPEQFPGLV-YRLRDPRVVVLI 149
Query: 94 WSSGKITCTGATSEDQSKIAARRYARCLQRLGF 126
+ SGK+ TG + +K A + + LQ LG
Sbjct: 150 FGSGKMVITGGKKPEDAKRAVEKISEELQALGL 182
>gi|14424468|sp|Q55031.2|TBP_SULSH RecName: Full=TATA-box-binding protein; AltName: Full=Box A-binding
protein; Short=BAP; AltName: Full=TATA sequence-binding
protein; Short=TBP; AltName: Full=TATA-box factor
Length = 198
Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 41/158 (25%), Positives = 83/158 (52%), Gaps = 4/158 (2%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYRREN--GMVTMKLRKPYTTASIWSSGKITCTG 103
I N+V + ++ L+L + + N+EY + G++ +L +P TA I+ SGK+ TG
Sbjct: 14 IENIVATVTLEQSLDLYAMERSIPNIEYDPDQFPGLI-FRLEQPKVTALIFKSGKMVVTG 72
Query: 104 ATSEDQSKIAARRYARCLQRLGFKARFT-NFRVVNVLGTCSMPFAIRILQFSEKHRAAEY 162
A S ++ A +R + L++ G K ++ N++ + ++ + + + + Y
Sbjct: 73 AKSTEELIKAVKRIIKTLKKYGIKIMGKPKIQIQNIVASANLHVNVNLDKAAFLLENNMY 132
Query: 163 EPELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
EPE PG+ +R+ P+ L IFS+G + +T +++
Sbjct: 133 EPEQFPGLIFRMDDPRVVLLIFSSGKMVITGAKREDEV 170
Score = 40.0 bits (92), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 41/83 (49%), Gaps = 3/83 (3%)
Query: 44 IIINNVVCSFSVRCHLNLRQIALNGVNVEYRREN--GMVTMKLRKPYTTASIWSSGKITC 101
I I N+V S ++ ++NL + A N Y E G++ ++ P I+SSGK+
Sbjct: 103 IQIQNIVASANLHVNVNLDKAAFLLENNMYEPEQFPGLI-FRMDDPRVVLLIFSSGKMVI 161
Query: 102 TGATSEDQSKIAARRYARCLQRL 124
TGA ED+ A +R L L
Sbjct: 162 TGAKREDEVSKAVKRIFDKLAEL 184
>gi|389848878|ref|YP_006351115.1| TATA-binding transcription initiation factor [Haloferax
mediterranei ATCC 33500]
gi|448614622|ref|ZP_21663769.1| transcription factor [Haloferax mediterranei ATCC 33500]
gi|388246184|gb|AFK21128.1| TATA-binding transcription initiation factor [Haloferax
mediterranei ATCC 33500]
gi|445753956|gb|EMA05371.1| transcription factor [Haloferax mediterranei ATCC 33500]
Length = 188
Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 46/154 (29%), Positives = 70/154 (45%), Gaps = 6/154 (3%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYRREN--GMVTMKLRKPYTTASIWSSGKITCTG 103
+ NVV S V L+L +++L+ +Y EN G+V + P ++ SGKI CTG
Sbjct: 12 VQNVVASTEVTLELDLDRLSLDMSGTDYDPENFPGLV-YRTENPKAACLVFRSGKIVCTG 70
Query: 104 ATSEDQSKIAARRYARCLQRLGFKA-RFTNFRVVNVLGTCSMPFAIRI--LQFSEKHRAA 160
A S + A L LG N V N++ + + A+ + L
Sbjct: 71 ADSVEDVNTAIETLFDDLDDLGIPVPDDPNTTVQNIVSSADLGAALNLNALAIGLGLEDV 130
Query: 161 EYEPELHPGVTYRITRPKATLKIFSTGGITVTAC 194
EYEPE PG+ YR+ P + +F +G I +T
Sbjct: 131 EYEPEQFPGLVYRLDDPNVVVLMFGSGKIVITGA 164
Score = 40.8 bits (94), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 30/62 (48%)
Query: 134 RVVNVLGTCSMPFAIRILQFSEKHRAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTA 193
V NV+ + + + + + S +Y+PE PG+ YR PKA +F +G I T
Sbjct: 11 EVQNVVASTEVTLELDLDRLSLDMSGTDYDPENFPGLVYRTENPKAACLVFRSGKIVCTG 70
Query: 194 CN 195
+
Sbjct: 71 AD 72
>gi|886020|gb|AAC43403.1| TATA-binding protein homolog; Method: conceptual translation
supplied by author, partial [Sulfolobus shibatae]
Length = 198
Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 41/158 (25%), Positives = 83/158 (52%), Gaps = 4/158 (2%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYRREN--GMVTMKLRKPYTTASIWSSGKITCTG 103
I N+V + ++ L+L + + N+EY + G++ +L +P TA I+ SGK+ TG
Sbjct: 14 IENIVATVTLEQSLDLYAMERSIPNIEYDPDQFPGLI-FRLEQPKVTALIFKSGKMVVTG 72
Query: 104 ATSEDQSKIAARRYARCLQRLGFKARFT-NFRVVNVLGTCSMPFAIRILQFSEKHRAAEY 162
A S ++ A +R + L++ G K ++ N++ + ++ + + + + Y
Sbjct: 73 AKSTEELIKAVKRIIKTLKKYGIKIMGKPKIQIQNIVASANLHVNVNLDKAAFLLENNMY 132
Query: 163 EPELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
EPE PG+ +R+ P+ L IFS+G + +T +++
Sbjct: 133 EPEQFPGLIFRMDDPRVVLLIFSSGKMVITGAKREDEV 170
Score = 40.0 bits (92), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 40/81 (49%), Gaps = 3/81 (3%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYRREN--GMVTMKLRKPYTTASIWSSGKITCTG 103
I N+V S ++ ++NL + A N Y E G++ ++ P I+SSGK+ TG
Sbjct: 105 IQNIVASANLHVNVNLDKAAFLLENNMYEPEQFPGLI-FRMDDPRVVLLIFSSGKMVITG 163
Query: 104 ATSEDQSKIAARRYARCLQRL 124
A ED+ A +R L L
Sbjct: 164 AKREDEVSKAVKRIFDKLAEL 184
>gi|432328919|ref|YP_007247063.1| TATA-box binding protein (TBP), component of TFIID and TFIIIB
[Aciduliprofundum sp. MAR08-339]
gi|432135628|gb|AGB04897.1| TATA-box binding protein (TBP), component of TFIID and TFIIIB
[Aciduliprofundum sp. MAR08-339]
Length = 181
Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 48/161 (29%), Positives = 78/161 (48%), Gaps = 8/161 (4%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYRREN--GMVTMKLRKPYTTASIWSSGKITCTG 103
I N+V S S+ L+L +IAL EY E G++ +L +P T I+ SGK+ CTG
Sbjct: 6 IENIVASTSLADKLDLSKIALALDGAEYEPEQFPGLI-YRLPEPKTAVLIFRSGKVNCTG 64
Query: 104 ATSEDQSKIAARRYARCLQRLGFKARFTNFRVV--NVLGTCSMPFAIRI--LQFSEKHRA 159
A ++ + + L+ G + + N ++V N++ + + + + S
Sbjct: 65 AKDIEKVEKTIKILVDKLKAAGIEV-YDNPKIVVQNIVAVYDLGVELNLTDIAMSLGLEN 123
Query: 160 AEYEPELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
EYEPE PG+ YRI PK L +F +G + T +I
Sbjct: 124 VEYEPEQFPGLVYRIEEPKVVLLLFGSGKVVCTGAKKKEEI 164
Score = 49.7 bits (117), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 50/87 (57%), Gaps = 5/87 (5%)
Query: 44 IIINNVVCSFSVRCHLNLRQIALN-GV-NVEYRREN--GMVTMKLRKPYTTASIWSSGKI 99
I++ N+V + + LNL IA++ G+ NVEY E G+V ++ +P ++ SGK+
Sbjct: 95 IVVQNIVAVYDLGVELNLTDIAMSLGLENVEYEPEQFPGLV-YRIEEPKVVLLLFGSGKV 153
Query: 100 TCTGATSEDQSKIAARRYARCLQRLGF 126
CTGA +++ A ++ + L+ +G
Sbjct: 154 VCTGAKKKEEIVEAIKKLKKELESVGL 180
Score = 46.6 bits (109), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 36/67 (53%)
Query: 134 RVVNVLGTCSMPFAIRILQFSEKHRAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTA 193
++ N++ + S+ + + + + AEYEPE PG+ YR+ PK + IF +G + T
Sbjct: 5 QIENIVASTSLADKLDLSKIALALDGAEYEPEQFPGLIYRLPEPKTAVLIFRSGKVNCTG 64
Query: 194 CNDSNKI 200
D K+
Sbjct: 65 AKDIEKV 71
>gi|134045653|ref|YP_001097139.1| transcription factor [Methanococcus maripaludis C5]
gi|132663278|gb|ABO34924.1| TATA-box binding protein [Methanococcus maripaludis C5]
Length = 174
Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 50/163 (30%), Positives = 79/163 (48%), Gaps = 6/163 (3%)
Query: 40 PEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYRRENGMVTMKLRKPYTT--ASIWSSG 97
PE++I+ NVV S ++ +NL +I N EY E + +R P +I+ SG
Sbjct: 4 PEINIV--NVVGSCDLKTPMNLEKIYPLIENSEYDPERYH-CIYIRTPGIKRLVTIFKSG 60
Query: 98 KITCTGATSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKH 157
K+ G+ S +++K A L LGF + ++ N++ S + + SE
Sbjct: 61 KLNTAGSKSIEEAKSAVLEIVDKLNELGFTDKRPEVKIYNIVANISFNKKFDLEEISENF 120
Query: 158 RAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
AEYEPE PGV +I PKAT IF +G I + + ++
Sbjct: 121 -GAEYEPEQFPGVVLKINDPKATFLIFKSGKIVINGVKSNEEL 162
>gi|448621885|ref|ZP_21668634.1| transcription factor [Haloferax denitrificans ATCC 35960]
gi|445754915|gb|EMA06309.1| transcription factor [Haloferax denitrificans ATCC 35960]
Length = 188
Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 48/156 (30%), Positives = 72/156 (46%), Gaps = 6/156 (3%)
Query: 44 IIINNVVCSFSVRCHLNLRQIALNGVNVEYRREN--GMVTMKLRKPYTTASIWSSGKITC 101
I I NVV S V L+L +++L+ +Y EN G+V + R P + ++ SGKI C
Sbjct: 10 IEIQNVVASTEVPLELDLERLSLDMDGTDYDPENFPGLV-YRTRDPKSACLVFRSGKIVC 68
Query: 102 TGATSEDQSKIAARRYARCLQRLGFKA-RFTNFRVVNVLGTCSMPFAIRI--LQFSEKHR 158
TGA S A LG + V N++ + + A+ + L
Sbjct: 69 TGANSVGDVSTAIETLFGEFADLGVPIPDEPDITVQNIVSSADLGAALNLNALAIGLGLE 128
Query: 159 AAEYEPELHPGVTYRITRPKATLKIFSTGGITVTAC 194
A EYEPE PG+ YR+ P + +F +G I +T
Sbjct: 129 AVEYEPEQFPGLVYRLDEPSVVVLMFGSGKIVITGA 164
Score = 43.5 bits (101), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 34/73 (46%)
Query: 132 NFRVVNVLGTCSMPFAIRILQFSEKHRAAEYEPELHPGVTYRITRPKATLKIFSTGGITV 191
+ + NV+ + +P + + + S +Y+PE PG+ YR PK+ +F +G I
Sbjct: 9 SIEIQNVVASTEVPLELDLERLSLDMDGTDYDPENFPGLVYRTRDPKSACLVFRSGKIVC 68
Query: 192 TACNDSNKIPVQI 204
T N + I
Sbjct: 69 TGANSVGDVSTAI 81
Score = 40.4 bits (93), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 44/90 (48%), Gaps = 5/90 (5%)
Query: 41 EVDIIINNVVCSFSVRCHLNLRQIALN-GVN-VEYRREN--GMVTMKLRKPYTTASIWSS 96
E DI + N+V S + LNL +A+ G+ VEY E G+V +L +P ++ S
Sbjct: 98 EPDITVQNIVSSADLGAALNLNALAIGLGLEAVEYEPEQFPGLV-YRLDEPSVVVLMFGS 156
Query: 97 GKITCTGATSEDQSKIAARRYARCLQRLGF 126
GKI TGA ++ A ++ LG
Sbjct: 157 GKIVITGAKQVADAEAALETVDEDVRELGL 186
>gi|118575298|ref|YP_875041.1| TATA-box binding protein (TBP), component of TFIID and TFIIIB
[Cenarchaeum symbiosum A]
gi|118193819|gb|ABK76737.1| TATA-box binding protein (TBP), component of TFIID and TFIIIB
[Cenarchaeum symbiosum A]
Length = 186
Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 46/158 (29%), Positives = 79/158 (50%), Gaps = 4/158 (2%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYRREN--GMVTMKLRKPYTTASIWSSGKITCTG 103
+ NVV S SV ++L + + EY E G+V +L P T I+ +GK+ CTG
Sbjct: 10 VENVVASASVDQKIDLNDVTKKFPDTEYNPEQFPGLV-FRLTSPKTATLIFRTGKMVCTG 68
Query: 104 ATSEDQSKIAARRYARCLQRLGFKARFTNFRVV-NVLGTCSMPFAIRILQFSEKHRAAEY 162
A SED + A R + L++ G K + VV N++ ++ I + + + + Y
Sbjct: 69 AKSEDMAVKAVRTVVQKLRKSGIKIKKDAVVVVQNIVAAINLGGKIHLEKAARVLPRSMY 128
Query: 163 EPELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
EPE PG+ +R+ PK + +F++G + T + +
Sbjct: 129 EPEQFPGLIHRMLDPKTVILLFASGKLVCTGAKKESDM 166
>gi|254167829|ref|ZP_04874678.1| Transcription factor TFIID (or TATA-binding protein, TBP)
[Aciduliprofundum boonei T469]
gi|254167914|ref|ZP_04874763.1| Transcription factor TFIID (or TATA-binding protein, TBP)
[Aciduliprofundum boonei T469]
gi|197623120|gb|EDY35686.1| Transcription factor TFIID (or TATA-binding protein, TBP)
[Aciduliprofundum boonei T469]
gi|197623205|gb|EDY35771.1| Transcription factor TFIID (or TATA-binding protein, TBP)
[Aciduliprofundum boonei T469]
Length = 185
Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 48/161 (29%), Positives = 78/161 (48%), Gaps = 8/161 (4%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYRREN--GMVTMKLRKPYTTASIWSSGKITCTG 103
I N+V S S+ L+L +IAL EY E G++ +L +P T I+ SGK+ CTG
Sbjct: 10 IENIVASTSLADKLDLSKIALALDGAEYEPEQFPGLI-YRLPEPKTAVLIFRSGKVNCTG 68
Query: 104 ATSEDQSKIAARRYARCLQRLGFKARFTNFRVV--NVLGTCSMPFAIRI--LQFSEKHRA 159
A ++ + + L+ G + + N ++V N++ + + + + S
Sbjct: 69 AKDIERVEKTIKILVDKLKAAGIEV-YDNPKIVVQNIVAVYDLGVELNLTDIAMSLGLEN 127
Query: 160 AEYEPELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
EYEPE PG+ YRI PK L +F +G + T +I
Sbjct: 128 VEYEPEQFPGLVYRIDEPKVVLLLFGSGKVVCTGAKKKEEI 168
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 50/87 (57%), Gaps = 5/87 (5%)
Query: 44 IIINNVVCSFSVRCHLNLRQIALN-GV-NVEYRREN--GMVTMKLRKPYTTASIWSSGKI 99
I++ N+V + + LNL IA++ G+ NVEY E G+V ++ +P ++ SGK+
Sbjct: 99 IVVQNIVAVYDLGVELNLTDIAMSLGLENVEYEPEQFPGLV-YRIDEPKVVLLLFGSGKV 157
Query: 100 TCTGATSEDQSKIAARRYARCLQRLGF 126
CTGA +++ A ++ + L+ +G
Sbjct: 158 VCTGAKKKEEIVEAIKKLKKELENVGL 184
Score = 45.4 bits (106), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 36/67 (53%)
Query: 134 RVVNVLGTCSMPFAIRILQFSEKHRAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTA 193
++ N++ + S+ + + + + AEYEPE PG+ YR+ PK + IF +G + T
Sbjct: 9 QIENIVASTSLADKLDLSKIALALDGAEYEPEQFPGLIYRLPEPKTAVLIFRSGKVNCTG 68
Query: 194 CNDSNKI 200
D ++
Sbjct: 69 AKDIERV 75
>gi|358340644|dbj|GAA48493.1| TATA-box-binding protein [Clonorchis sinensis]
Length = 170
Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 39/102 (38%), Positives = 63/102 (61%), Gaps = 9/102 (8%)
Query: 33 PQPPAHDPEVDI------IINNVVCSFSVRCHLNLRQIALNGVNVEY--RRENGMVTMKL 84
P PP +P + +I+NV+ + ++ CH+ LR++ L+ + EY +R G V M+L
Sbjct: 21 PVPPGDEPTKLMYGLRKPMIHNVIATVNLGCHIELRKVVLHIRSAEYNPKRFPGAV-MRL 79
Query: 85 RKPYTTASIWSSGKITCTGATSEDQSKIAARRYARCLQRLGF 126
R+P T I+ +GK+ CTGA SE + + AR+ AR LQ++GF
Sbjct: 80 REPRVTCLIFGTGKMVCTGARSEAECHLGARKCARILQKIGF 121
Score = 38.5 bits (88), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 29/57 (50%)
Query: 137 NVLGTCSMPFAIRILQFSEKHRAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTA 193
NV+ T ++ I + + R+AEY P+ PG R+ P+ T IF TG + T
Sbjct: 42 NVIATVNLGCHIELRKVVLHIRSAEYNPKRFPGAVMRLREPRVTCLIFGTGKMVCTG 98
>gi|448603976|ref|ZP_21657400.1| transcription factor [Haloferax sulfurifontis ATCC BAA-897]
gi|445744772|gb|ELZ96244.1| transcription factor [Haloferax sulfurifontis ATCC BAA-897]
Length = 188
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 48/156 (30%), Positives = 72/156 (46%), Gaps = 6/156 (3%)
Query: 44 IIINNVVCSFSVRCHLNLRQIALNGVNVEYRREN--GMVTMKLRKPYTTASIWSSGKITC 101
I I NVV S V L+L +++L+ +Y EN G+V + R P + ++ SGKI C
Sbjct: 10 IEIQNVVASTEVPLELDLERLSLDMDGTDYDPENFPGLV-YRTRDPKSACLVFRSGKIVC 68
Query: 102 TGATSEDQSKIAARRYARCLQRLGFKA-RFTNFRVVNVLGTCSMPFAIRI--LQFSEKHR 158
TGA S A LG + V N++ + + A+ + L
Sbjct: 69 TGANSVGDVSTAIETLFGEFADLGVPIPDEPDITVQNIVSSADLGAALNLNALAIGLGLE 128
Query: 159 AAEYEPELHPGVTYRITRPKATLKIFSTGGITVTAC 194
A EYEPE PG+ YR+ P + +F +G I +T
Sbjct: 129 AVEYEPEQFPGLVYRLDEPSVVVLMFGSGKIVITGA 164
Score = 43.5 bits (101), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 34/73 (46%)
Query: 132 NFRVVNVLGTCSMPFAIRILQFSEKHRAAEYEPELHPGVTYRITRPKATLKIFSTGGITV 191
+ + NV+ + +P + + + S +Y+PE PG+ YR PK+ +F +G I
Sbjct: 9 SIEIQNVVASTEVPLELDLERLSLDMDGTDYDPENFPGLVYRTRDPKSACLVFRSGKIVC 68
Query: 192 TACNDSNKIPVQI 204
T N + I
Sbjct: 69 TGANSVGDVSTAI 81
>gi|14423939|sp|P58178.1|TBP_SULSO RecName: Full=TATA-box-binding protein; AltName: Full=Box A-binding
protein; Short=BAP; AltName: Full=TATA sequence-binding
protein; Short=TBP; AltName: Full=TATA-box factor
Length = 198
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/158 (25%), Positives = 83/158 (52%), Gaps = 4/158 (2%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYRREN--GMVTMKLRKPYTTASIWSSGKITCTG 103
I N+V + ++ L+L + + N+EY + G++ +L +P TA I+ SGK+ TG
Sbjct: 14 IENIVATVTLEQSLDLYAMERSIPNIEYDPDQFPGLI-FRLEQPKVTALIFKSGKMVVTG 72
Query: 104 ATSEDQSKIAARRYARCLQRLGFKARFT-NFRVVNVLGTCSMPFAIRILQFSEKHRAAEY 162
A S ++ A +R + L++ G K ++ N++ + ++ + + + + Y
Sbjct: 73 AKSTEELIKAVKRIIKTLKKYGIKIVGKPKIQIQNIVASANLHVNVNLDKAAFLLENNMY 132
Query: 163 EPELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
EPE PG+ +R+ P+ L IFS+G + +T +++
Sbjct: 133 EPEQFPGLIFRMDDPRVVLLIFSSGKMVITGAKREDEV 170
Score = 40.0 bits (92), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 40/81 (49%), Gaps = 3/81 (3%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYRREN--GMVTMKLRKPYTTASIWSSGKITCTG 103
I N+V S ++ ++NL + A N Y E G++ ++ P I+SSGK+ TG
Sbjct: 105 IQNIVASANLHVNVNLDKAAFLLENNMYEPEQFPGLI-FRMDDPRVVLLIFSSGKMVITG 163
Query: 104 ATSEDQSKIAARRYARCLQRL 124
A ED+ A +R L L
Sbjct: 164 AKREDEVSKAVKRIFDKLAEL 184
>gi|289596646|ref|YP_003483342.1| TATA-box binding family protein [Aciduliprofundum boonei T469]
gi|289534433|gb|ADD08780.1| TATA-box binding family protein [Aciduliprofundum boonei T469]
Length = 181
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 48/161 (29%), Positives = 78/161 (48%), Gaps = 8/161 (4%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYRREN--GMVTMKLRKPYTTASIWSSGKITCTG 103
I N+V S S+ L+L +IAL EY E G++ +L +P T I+ SGK+ CTG
Sbjct: 6 IENIVASTSLADKLDLSKIALALDGAEYEPEQFPGLI-YRLPEPKTAVLIFRSGKVNCTG 64
Query: 104 ATSEDQSKIAARRYARCLQRLGFKARFTNFRVV--NVLGTCSMPFAIRI--LQFSEKHRA 159
A ++ + + L+ G + + N ++V N++ + + + + S
Sbjct: 65 AKDIERVEKTIKILVDKLKAAGIEV-YDNPKIVVQNIVAVYDLGVELNLTDIAMSLGLEN 123
Query: 160 AEYEPELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
EYEPE PG+ YRI PK L +F +G + T +I
Sbjct: 124 VEYEPEQFPGLVYRIDEPKVVLLLFGSGKVVCTGAKKKEEI 164
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 50/87 (57%), Gaps = 5/87 (5%)
Query: 44 IIINNVVCSFSVRCHLNLRQIALN-GV-NVEYRREN--GMVTMKLRKPYTTASIWSSGKI 99
I++ N+V + + LNL IA++ G+ NVEY E G+V ++ +P ++ SGK+
Sbjct: 95 IVVQNIVAVYDLGVELNLTDIAMSLGLENVEYEPEQFPGLV-YRIDEPKVVLLLFGSGKV 153
Query: 100 TCTGATSEDQSKIAARRYARCLQRLGF 126
CTGA +++ A ++ + L+ +G
Sbjct: 154 VCTGAKKKEEIVEAIKKLKKELENVGL 180
Score = 45.4 bits (106), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 36/67 (53%)
Query: 134 RVVNVLGTCSMPFAIRILQFSEKHRAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTA 193
++ N++ + S+ + + + + AEYEPE PG+ YR+ PK + IF +G + T
Sbjct: 5 QIENIVASTSLADKLDLSKIALALDGAEYEPEQFPGLIYRLPEPKTAVLIFRSGKVNCTG 64
Query: 194 CNDSNKI 200
D ++
Sbjct: 65 AKDIERV 71
>gi|124027807|ref|YP_001013127.1| transcription factor [Hyperthermus butylicus DSM 5456]
gi|123978501|gb|ABM80782.1| TATA-box binding protein [Hyperthermus butylicus DSM 5456]
Length = 202
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 45/158 (28%), Positives = 81/158 (51%), Gaps = 4/158 (2%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYRREN--GMVTMKLRKPYTTASIWSSGKITCTG 103
I N+V + S+ L+LR I + + VEY E G+V +L +P TA I+ SGK+ TG
Sbjct: 26 IENIVATVSLDQQLDLRLIERSILTVEYNPEQFPGLV-YRLDEPKVTALIFKSGKMVVTG 84
Query: 104 ATSEDQSKIAARRYARCLQRLGFKARFT-NFRVVNVLGTCSMPFAIRILQFSEKHRAAEY 162
A S A ++ R L++ G ++ N++ + ++ + + + + + Y
Sbjct: 85 AKSTKDLIEAVKKIVRNLKKHGIPIYGRPKVQIQNIVASANLNVCVDLERAALTLENSMY 144
Query: 163 EPELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
EPE PG+ +R+ P+ L IFS+G + +T ++
Sbjct: 145 EPEQFPGLIHRMDEPRVVLLIFSSGKMVITGAKREEEV 182
Score = 43.5 bits (101), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 32/67 (47%)
Query: 134 RVVNVLGTCSMPFAIRILQFSEKHRAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTA 193
++ N++ T S+ + + EY PE PG+ YR+ PK T IF +G + VT
Sbjct: 25 KIENIVATVSLDQQLDLRLIERSILTVEYNPEQFPGLVYRLDEPKVTALIFKSGKMVVTG 84
Query: 194 CNDSNKI 200
+ +
Sbjct: 85 AKSTKDL 91
>gi|357479029|ref|XP_003609800.1| TATA-box binding protein [Medicago truncatula]
gi|355510855|gb|AES91997.1| TATA-box binding protein [Medicago truncatula]
Length = 162
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 46/139 (33%), Positives = 70/139 (50%), Gaps = 26/139 (18%)
Query: 14 SEQEPPPTQTVVPIQNHAPPQPPAHDPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEY 73
++QE +Q V +Q H P A P ++ + N+V + + C L+L IAL + Y
Sbjct: 2 ADQEMQDSQQAVDLQKH--PSGAAIAPNLNNV-QNLVSTVNWMCKLDLEAIALQSRSAVY 58
Query: 74 RRENGMV----------------------TMKLRKPYTTASIWSSGKITCTGATSEDQSK 111
+ + + MK+RKP TA I+SSGK+ CTG +E QSK
Sbjct: 59 KPKASFICSFIVNLIQIPSVLCMQHFPFLIMKIRKPKATALIYSSGKMICTGG-NEKQSK 117
Query: 112 IAARRYARCLQRLGFKARF 130
+AAR+Y R +Q+ GF +F
Sbjct: 118 LAARKYTRIIQKCGFPVKF 136
>gi|116753474|ref|YP_842592.1| transcription factor [Methanosaeta thermophila PT]
gi|121693723|sp|A0B5H8.1|TBP_METTP RecName: Full=TATA-box-binding protein; AltName: Full=Box A-binding
protein; Short=BAP; AltName: Full=TATA sequence-binding
protein; Short=TBP; AltName: Full=TATA-box factor
gi|116664925|gb|ABK13952.1| TATA binding protein of transcription factor TFIID [Methanosaeta
thermophila PT]
Length = 183
Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 49/161 (30%), Positives = 77/161 (47%), Gaps = 11/161 (6%)
Query: 41 EVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYRREN--GMVTMKLRKPYTTASIWSSGK 98
E I I NVV S + +L +I EY +E G+V +++ P I++SGK
Sbjct: 2 ESTINIENVVASTKLADEFDLVKIESELEGAEYNKEKFPGLV-YRVKSPKAAFLIFTSGK 60
Query: 99 ITCTGATSEDQSKIAARRYARCLQRLGFKARFTNFR----VVNVLGTCSMPFAIRI--LQ 152
+ CTGA + + + AR L+ +GF N V N++ + + + + +
Sbjct: 61 VVCTGAKNVEDVRTVITNMARTLKSIGFDN--INLEPEIHVQNIVASADLKTDLNLNAIA 118
Query: 153 FSEKHRAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTA 193
EYEPE PG+ YRI +PK + IFS+G + VT
Sbjct: 119 LGLGLENIEYEPEQFPGLVYRIKQPKVVVLIFSSGKLVVTG 159
Score = 46.6 bits (109), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 51/92 (55%), Gaps = 7/92 (7%)
Query: 39 DPEVDIIINNVVCSFSVRCHLNLRQIALN-GV-NVEYRREN--GMVTMKLRKPYTTASIW 94
+PE+ + N+V S ++ LNL IAL G+ N+EY E G+V ++++P I+
Sbjct: 94 EPEIHV--QNIVASADLKTDLNLNAIALGLGLENIEYEPEQFPGLV-YRIKQPKVVVLIF 150
Query: 95 SSGKITCTGATSEDQSKIAARRYARCLQRLGF 126
SSGK+ TG S ++ + R + L+ LG
Sbjct: 151 SSGKLVVTGGKSPEECEEGVRIVRQQLENLGL 182
Score = 42.0 bits (97), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 31/64 (48%)
Query: 137 NVLGTCSMPFAIRILQFSEKHRAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTACND 196
NV+ + + +++ + AEY E PG+ YR+ PKA IF++G + T +
Sbjct: 9 NVVASTKLADEFDLVKIESELEGAEYNKEKFPGLVYRVKSPKAAFLIFTSGKVVCTGAKN 68
Query: 197 SNKI 200
+
Sbjct: 69 VEDV 72
>gi|393796700|ref|ZP_10380064.1| 2-alkenal reductase [Candidatus Nitrosoarchaeum limnia BG20]
Length = 187
Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 45/168 (26%), Positives = 85/168 (50%), Gaps = 6/168 (3%)
Query: 36 PAHDPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYRREN--GMVTMKLRKPYTTASI 93
P P + I+ NVV S +V +L I + EY + G+V +L+ P T I
Sbjct: 2 PQSKPMISIV--NVVASATVDQKFDLNDITKKFPDTEYHPDQFPGLV-FRLKNPKTATLI 58
Query: 94 WSSGKITCTGATSEDQSKIAARRYARCLQRLGFKARFTNFRVV-NVLGTCSMPFAIRILQ 152
+ +GK+ CTG+ SE+ ++ A + + L++ G K + V N++ + ++ + + +
Sbjct: 59 FRTGKMVCTGSKSEEMARSAVKTVVQKLRKEGVKVKKDAVVTVQNIVASINLGGKVHLEK 118
Query: 153 FSEKHRAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
+ + YEPE PG+ +R+ PK + IFS+G + T + + +
Sbjct: 119 AARTLPRSMYEPEQFPGLIHRMLDPKTVILIFSSGKLVCTGAKNESDV 166
>gi|297620217|ref|YP_003708322.1| TATA-box binding family protein [Methanococcus voltae A3]
gi|297379194|gb|ADI37349.1| TATA-box binding family protein [Methanococcus voltae A3]
Length = 181
Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 48/158 (30%), Positives = 77/158 (48%), Gaps = 7/158 (4%)
Query: 39 DPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYRREN--GMVTMKLRKPYTTASIWSS 96
+PE+ I+ NVV S + ++L A N EY E G+V +L P I+ S
Sbjct: 2 EPEIKIV--NVVVSTQIGTDIDLEYAADVLDNAEYEPEQFPGLVC-RLSDPKVALLIFRS 58
Query: 97 GKITCTGATSEDQSKIAARRYARCLQRLGFKARFT-NFRVVNVLGTCSMPFAIRILQFSE 155
GK+ CTGA S+ ++IA ++ L+ G + + N++ T + + S
Sbjct: 59 GKLNCTGAKSKSDAEIAIKKIIAELKEAGMEIIDNPEVSIQNMVATTELGMEPNLDDIS- 117
Query: 156 KHRAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTA 193
EYEPE PG+ YR++ PK + IF +G + +T
Sbjct: 118 TLECTEYEPEQFPGLVYRLSDPKVVVLIFGSGKVVITG 155
Score = 40.8 bits (94), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 36/72 (50%)
Query: 133 FRVVNVLGTCSMPFAIRILQFSEKHRAAEYEPELHPGVTYRITRPKATLKIFSTGGITVT 192
++VNV+ + + I + ++ AEYEPE PG+ R++ PK L IF +G + T
Sbjct: 5 IKIVNVVVSTQIGTDIDLEYAADVLDNAEYEPEQFPGLVCRLSDPKVALLIFRSGKLNCT 64
Query: 193 ACNDSNKIPVQI 204
+ + I
Sbjct: 65 GAKSKSDAEIAI 76
>gi|13542225|ref|NP_111913.1| transcription factor [Thermoplasma volcanium GSS1]
gi|24638241|sp|Q978J5.1|TBP_THEVO RecName: Full=TATA-box-binding protein; AltName: Full=Box A-binding
protein; Short=BAP; AltName: Full=TATA sequence-binding
protein; Short=TBP; AltName: Full=TATA-box factor
gi|14325659|dbj|BAB60562.1| TATA-binding protein [TBP] [Thermoplasma volcanium GSS1]
Length = 184
Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 49/169 (28%), Positives = 80/169 (47%), Gaps = 20/169 (11%)
Query: 44 IIINNVVCSFSVRCHLNLRQIALNGVNVEYRREN--GMVTMKLRKPYTTASIWSSGKITC 101
I I N+V S S+ HL+L +IAL EY E G++ +L+ P T I+ SGK+ C
Sbjct: 7 ITIENIVASTSLAEHLDLSRIALALDGSEYEPEQFPGLI-YRLQDPKTAVLIFRSGKVNC 65
Query: 102 TGATSEDQSKIAARRYARCLQRLGFKARFTNFRVV--------NVLGTCSMPFAIRI--L 151
TGA + + K R ++ + K + N V N++ + + + +
Sbjct: 66 TGAKNIEDVK-------RTIKIIIDKLKAANIEVYDDPDIIVQNIVAVYDLESELNLTDI 118
Query: 152 QFSEKHRAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
S EYEPE PG+ YR+ P+ L +F +G + T + ++I
Sbjct: 119 AMSLGLENVEYEPEQFPGLVYRVEEPRVVLLLFGSGKVVCTGAKEESEI 167
Score = 56.2 bits (134), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 53/93 (56%), Gaps = 7/93 (7%)
Query: 38 HDPEVDIIINNVVCSFSVRCHLNLRQIALN-GV-NVEYRREN--GMVTMKLRKPYTTASI 93
DP DII+ N+V + + LNL IA++ G+ NVEY E G+V ++ +P +
Sbjct: 94 DDP--DIIVQNIVAVYDLESELNLTDIAMSLGLENVEYEPEQFPGLV-YRVEEPRVVLLL 150
Query: 94 WSSGKITCTGATSEDQSKIAARRYARCLQRLGF 126
+ SGK+ CTGA E + + A + + LQ++G
Sbjct: 151 FGSGKVVCTGAKEESEIEQAVIKVKKELQKVGL 183
>gi|374325915|ref|YP_005084115.1| hypothetical protein P186_0409 [Pyrobaculum sp. 1860]
gi|356641184|gb|AET31863.1| hypothetical protein P186_0409 [Pyrobaculum sp. 1860]
Length = 186
Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 75/151 (49%), Gaps = 4/151 (2%)
Query: 53 FSVRCHLNLRQIALNGVNVEYRREN--GMVTMKLRKPYTTASIWSSGKITCTGATSEDQS 110
++ L+L Q+A EY + G++ ++L KP +A I+ +GK+ CTGA +E+
Sbjct: 1 MNLGVELDLEQLAERLTMAEYNPDQFPGLI-LRLTKPRISALIFRTGKMVCTGAKNEEDL 59
Query: 111 KIAARRYARCLQRLGFKARFT-NFRVVNVLGTCSMPFAIRILQFSEKHRAAEYEPELHPG 169
K A R + L+ G F ++ N++ + ++ + + Q A YEPE PG
Sbjct: 60 KNAVRALVKLLKDHGADVPFDPEVQIQNIVASGNLHAEVDLEQAVLMLENAMYEPEQFPG 119
Query: 170 VTYRITRPKATLKIFSTGGITVTACNDSNKI 200
+ YR++ P+ + IF +G I T +
Sbjct: 120 LIYRMSSPRVVILIFGSGKIVCTGAKSEKDV 150
Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 58/126 (46%), Gaps = 8/126 (6%)
Query: 3 TAGMTTTHSSHSEQEPPPTQTVVPI-QNHAPPQPPAHDPEVDIIINNVVCSFSVRCHLNL 61
T M T + + E + +V + ++H P DPEV I N+V S ++ ++L
Sbjct: 45 TGKMVCTGAKNEEDLKNAVRALVKLLKDHGADVP--FDPEVQI--QNIVASGNLHAEVDL 100
Query: 62 RQIALNGVNVEYRREN--GMVTMKLRKPYTTASIWSSGKITCTGATSEDQSKIAARRYAR 119
Q L N Y E G++ ++ P I+ SGKI CTGA SE A ++
Sbjct: 101 EQAVLMLENAMYEPEQFPGLIY-RMSSPRVVILIFGSGKIVCTGAKSEKDVATAVQKLYA 159
Query: 120 CLQRLG 125
L+ LG
Sbjct: 160 QLKDLG 165
>gi|333986797|ref|YP_004519404.1| TATA-box-binding protein [Methanobacterium sp. SWAN-1]
gi|333824941|gb|AEG17603.1| TATA-box-binding protein [Methanobacterium sp. SWAN-1]
Length = 184
Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 48/158 (30%), Positives = 78/158 (49%), Gaps = 6/158 (3%)
Query: 41 EVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYRREN--GMVTMKLRKPYTTASIWSSGK 98
+V I + N+V S ++ L L ++A VEY E G+V KL++P T A I+ SGK
Sbjct: 6 DVKIKVENIVASATLGKSLELPKVAPALEGVEYNVEQFPGLV-YKLKEPKTAALIFGSGK 64
Query: 99 ITCTGATSEDQSKIAARRYARCLQRLG--FKARFTNFRVVNVLGTCSMPFAIRILQFSEK 156
+ CTGA S + S A ++ L F ++ N++ + ++ + + +
Sbjct: 65 LVCTGAKSIENSIKAIHIAVDKMRSLDPDIPHEF-EIKIQNIVASANLMSTLNLEAVAMD 123
Query: 157 HRAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTAC 194
EYEPE PG+ YR+ PK L +F +G + T
Sbjct: 124 LENTEYEPEQFPGLVYRLGEPKVVLLLFGSGKVVCTGA 161
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 47/88 (53%), Gaps = 3/88 (3%)
Query: 41 EVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYRREN--GMVTMKLRKPYTTASIWSSGK 98
E +I I N+V S ++ LNL +A++ N EY E G+V +L +P ++ SGK
Sbjct: 97 EFEIKIQNIVASANLMSTLNLEAVAMDLENTEYEPEQFPGLV-YRLGEPKVVLLLFGSGK 155
Query: 99 ITCTGATSEDQSKIAARRYARCLQRLGF 126
+ CTGA S++ +++ + L L
Sbjct: 156 VVCTGAKSKEDAQLGVEKTKERLIELDL 183
>gi|413933537|gb|AFW68088.1| TATA-binding protein2 isoform 1 [Zea mays]
gi|413933538|gb|AFW68089.1| TATA-binding protein2 isoform 2 [Zea mays]
Length = 78
Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/70 (48%), Positives = 49/70 (70%), Gaps = 1/70 (1%)
Query: 48 NVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGATS 106
N+V + ++ C L+L+ IAL N EY + V M++R+P TTA I++SGK+ CTGA S
Sbjct: 8 NIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVCTGAKS 67
Query: 107 EDQSKIAARR 116
E QSK+AAR+
Sbjct: 68 EQQSKLAARK 77
>gi|389584271|dbj|GAB67004.1| transcription initiation factor TFiid TATA-binding protein, partial
[Plasmodium cynomolgi strain B]
Length = 246
Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 44/164 (26%), Positives = 90/164 (54%), Gaps = 12/164 (7%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYR--RENGMVTMKLRKPYTTASIWSSGKITCTG 103
I+N++ S ++ ++LR +A++ N EY + N ++ ++L KP T I+ SG++ TG
Sbjct: 74 IHNIIASANLSVEIDLRLVAISIRNAEYNPSKINTLI-VRLNKPKCTVLIFKSGRLMLTG 132
Query: 104 ATSEDQSKIAARRYARCLQRLGFKA-RFTNFRVVNVLGT--CSMPFAIRILQFSEKHRA- 159
++ + A ++ + ++ + ++ + F + N++ + C+MP IR+ + H+
Sbjct: 133 TKTKGDAIYACKKIGKIIRLVTNESVKLEGFNIENIIASADCNMP--IRLEMLAHDHKDY 190
Query: 160 AEYEPELHPGVTYRI---TRPKATLKIFSTGGITVTACNDSNKI 200
YEPEL G+ YR ++ K+ + IF +G I +T C K+
Sbjct: 191 CNYEPELFAGLVYRYKPTSKLKSVILIFVSGKIIITGCKSVQKL 234
>gi|448349348|ref|ZP_21538190.1| transcription factor [Natrialba taiwanensis DSM 12281]
gi|445640591|gb|ELY93678.1| transcription factor [Natrialba taiwanensis DSM 12281]
Length = 186
Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 48/167 (28%), Positives = 76/167 (45%), Gaps = 6/167 (3%)
Query: 39 DPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYRREN--GMVTMKLRKPYTTASIWSS 96
+P I I NVV S + LNL Q+ + +Y E+ G+V + ++P A I+ S
Sbjct: 3 EPTETIKIENVVASTGIDQELNLEQVGDDLPEADYNPEHFPGLV-YRTQEPKAAALIFRS 61
Query: 97 GKITCTGATSEDQSKIAARRYARCLQRLGFKA-RFTNFRVVNVLGTCSM--PFAIRILQF 153
GKI CTGA+SE + + L+ LG V N++ + F + +
Sbjct: 62 GKIVCTGASSEPAVRESLSIVFEVLRGLGIDIPESPTIEVQNIVASIDFGSQFNLNAIAI 121
Query: 154 SEKHRAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
EYEPE PG+ YR+ P A +F +G +T ++ +
Sbjct: 122 GLGLEDVEYEPEQFPGLVYRLDDPSAVALLFGSGKAIITGAKTTDAV 168
>gi|329764975|ref|ZP_08256562.1| TATA-box binding protein (TBP), component of TFIID and TFIIIB
[Candidatus Nitrosoarchaeum limnia SFB1]
gi|329138512|gb|EGG42761.1| TATA-box binding protein (TBP), component of TFIID and TFIIIB
[Candidatus Nitrosoarchaeum limnia SFB1]
Length = 187
Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 45/168 (26%), Positives = 85/168 (50%), Gaps = 6/168 (3%)
Query: 36 PAHDPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYRREN--GMVTMKLRKPYTTASI 93
P P + I+ NVV S +V +L I + EY + G+V +L+ P T I
Sbjct: 2 PQSKPMISIV--NVVASATVDQKFDLNDITKKFPDTEYHPDQFPGLV-FRLKNPKTATLI 58
Query: 94 WSSGKITCTGATSEDQSKIAARRYARCLQRLGFKARFTNFRVV-NVLGTCSMPFAIRILQ 152
+ +GK+ CTG+ SE+ ++ A + + L++ G K + V N++ + ++ + + +
Sbjct: 59 FRTGKMVCTGSKSEEMARNAVKTVVQKLRKEGVKVKKDAVVTVQNIVASINLGGKVHLEK 118
Query: 153 FSEKHRAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
+ + YEPE PG+ +R+ PK + IFS+G + T + + +
Sbjct: 119 AARTLPRSMYEPEQFPGLIHRMLDPKTVILIFSSGKLVCTGAKNESDV 166
>gi|55377538|ref|YP_135388.1| transcription factor [Haloarcula marismortui ATCC 43049]
gi|344211616|ref|YP_004795936.1| transcription factor/TATA-box binding family protein [Haloarcula
hispanica ATCC 33960]
gi|448630604|ref|ZP_21673184.1| transcription factor [Haloarcula vallismortis ATCC 29715]
gi|448639975|ref|ZP_21677123.1| transcription factor [Haloarcula sinaiiensis ATCC 33800]
gi|448659470|ref|ZP_21683325.1| transcription factor [Haloarcula californiae ATCC 33799]
gi|448666852|ref|ZP_21685497.1| transcription factor [Haloarcula amylolytica JCM 13557]
gi|448678006|ref|ZP_21689196.1| transcription factor [Haloarcula argentinensis DSM 12282]
gi|448688547|ref|ZP_21694349.1| transcription factor [Haloarcula japonica DSM 6131]
gi|74571974|sp|Q5V470.1|TBP_HALMA RecName: Full=TATA-box-binding protein; AltName: Full=Box A-binding
protein; Short=BAP; AltName: Full=TATA sequence-binding
protein; Short=TBP; AltName: Full=TATA-box factor
gi|55230263|gb|AAV45682.1| TATA-box binding protein E [Haloarcula marismortui ATCC 43049]
gi|343782971|gb|AEM56948.1| transcription factor / TATA-box binding family protein [Haloarcula
hispanica ATCC 33960]
gi|445755637|gb|EMA07020.1| transcription factor [Haloarcula vallismortis ATCC 29715]
gi|445760411|gb|EMA11674.1| transcription factor [Haloarcula californiae ATCC 33799]
gi|445762502|gb|EMA13723.1| transcription factor [Haloarcula sinaiiensis ATCC 33800]
gi|445771983|gb|EMA23039.1| transcription factor [Haloarcula amylolytica JCM 13557]
gi|445773681|gb|EMA24714.1| transcription factor [Haloarcula argentinensis DSM 12282]
gi|445779213|gb|EMA30150.1| transcription factor [Haloarcula japonica DSM 6131]
Length = 186
Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 47/160 (29%), Positives = 75/160 (46%), Gaps = 6/160 (3%)
Query: 39 DPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYRREN--GMVTMKLRKPYTTASIWSS 96
DP+ I I NVV S + L+L +A++ +Y E G+V + + P + A I+ S
Sbjct: 3 DPKESIDIENVVASTGIGQELDLESVAMDLEGADYDPEQFPGLV-YRTQDPKSAALIFRS 61
Query: 97 GKITCTGATSEDQSKIAARRYARCLQRLGFKARFT-NFRVVNVLGTCSMPFAIRI--LQF 153
GKI CTGA S D + R L+ L + V N++ + + ++ + +
Sbjct: 62 GKIVCTGAKSTDDVHQSLRIVFDKLRDLNIQVDDDPEIVVQNIVSSADLGSSLNLNAIAI 121
Query: 154 SEKHRAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTA 193
EYEPE PG+ YR+ P +F +G + VT
Sbjct: 122 GLGLENIEYEPEQFPGLVYRLDEPDVVALLFGSGKLVVTG 161
Score = 46.2 bits (108), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 48/93 (51%), Gaps = 7/93 (7%)
Query: 38 HDPEVDIIINNVVCSFSVRCHLNLRQIALN-GV-NVEYRREN--GMVTMKLRKPYTTASI 93
DPE I++ N+V S + LNL IA+ G+ N+EY E G+V +L +P A +
Sbjct: 95 DDPE--IVVQNIVSSADLGSSLNLNAIAIGLGLENIEYEPEQFPGLV-YRLDEPDVVALL 151
Query: 94 WSSGKITCTGATSEDQSKIAARRYARCLQRLGF 126
+ SGK+ TG ++ ++ A L LG
Sbjct: 152 FGSGKLVVTGGKRKEDAEEAVDTIVERLSDLGL 184
Score = 39.3 bits (90), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 31/64 (48%)
Query: 137 NVLGTCSMPFAIRILQFSEKHRAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTACND 196
NV+ + + + + + A+Y+PE PG+ YR PK+ IF +G I T
Sbjct: 12 NVVASTGIGQELDLESVAMDLEGADYDPEQFPGLVYRTQDPKSAALIFRSGKIVCTGAKS 71
Query: 197 SNKI 200
++ +
Sbjct: 72 TDDV 75
>gi|156937779|ref|YP_001435575.1| TATA binding protein of transcription factor TFIID [Ignicoccus
hospitalis KIN4/I]
gi|156566763|gb|ABU82168.1| TATA binding protein of transcription factor TFIID [Ignicoccus
hospitalis KIN4/I]
Length = 207
Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 45/163 (27%), Positives = 83/163 (50%), Gaps = 8/163 (4%)
Query: 44 IIINNVVCSFSVRCHLNLRQIALN-GVNVEYRREN--GMVTMKLRKPYTTASIWSSGKIT 100
I I N+V + S+ +++L +I NVEY + G++ +L +P TA I+ SGK+
Sbjct: 11 IKIENIVATVSIDQNIDLEKIEKEFDSNVEYDPDQFPGLI-FRLEEPRVTALIFKSGKMV 69
Query: 101 CTGATSEDQSKIAARRYARCLQRLGF---KARFTNFRVVNVLGTCSMPFAIRILQFSEKH 157
TGA S + A ++ L+ G K R ++ N++ + ++ + + + +
Sbjct: 70 VTGAKSTQELITAVKKIFYILKSKGIVSGKVR-PRIQIQNIVASANLGVEVHLEKAAYLL 128
Query: 158 RAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
+ YEPE PG+ YR+ P+ L +FS+G + VT ++
Sbjct: 129 ENSMYEPEQFPGLIYRLDEPRVVLLLFSSGKMVVTGAKKEEEV 171
>gi|408406051|ref|YP_006864035.1| TATA-box-binding protein [Candidatus Nitrososphaera gargensis
Ga9.2]
gi|408366647|gb|AFU60377.1| TATA-box-binding protein [Candidatus Nitrososphaera gargensis
Ga9.2]
Length = 187
Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 47/158 (29%), Positives = 78/158 (49%), Gaps = 4/158 (2%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYRREN--GMVTMKLRKPYTTASIWSSGKITCTG 103
I NVV S +V +NL I +VEY + G+V +LR P T I+SSGK+ CTG
Sbjct: 10 IENVVASATVNQTVNLNLITQIFPDVEYHPDQFPGLV-FRLRSPKTATLIFSSGKMVCTG 68
Query: 104 ATSEDQSKIAARRYARCLQRLGFKARFT-NFRVVNVLGTCSMPFAIRILQFSEKHRAAEY 162
A SE + A + L++ G + N++ + S+ I + + + Y
Sbjct: 69 AKSEKMAIQAVKNVVLKLKKGGIPLEHEPQIEIQNIVASASLGGKIHLELAARVLPRSMY 128
Query: 163 EPELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
EPE PG+ +R+ PK + +F++G + T +++
Sbjct: 129 EPEQFPGLIHRMLDPKTVILLFASGKLVCTGAKKESEV 166
>gi|282162800|ref|YP_003355185.1| TATA-box-binding protein [Methanocella paludicola SANAE]
gi|282155114|dbj|BAI60202.1| TATA-box-binding protein [Methanocella paludicola SANAE]
Length = 188
Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 79/162 (48%), Gaps = 6/162 (3%)
Query: 37 AHDPEVDIIINNVVCSFSVRCHLNLRQI--ALNGVNVEYRRENGMVTMKLRKPYTTASIW 94
A + + I I NVV S ++ ++L+ + AL G + + + G+V + + P T A I+
Sbjct: 4 AEEAKKTITIENVVASTAIGQEIDLKSVTLALEGADYDPEQFPGLV-YRTKDPKTAALIF 62
Query: 95 SSGKITCTGATSEDQSKIAARRYARCLQRLGFKARFT-NFRVVNVLGTCSMPFAIRI--L 151
SGKI CTGA S + ++ + + +G K V N++ + + + + +
Sbjct: 63 RSGKIVCTGAKSIEDVDRGLKKVFKKMDSVGIKVDQNPEITVQNIVASADLGSVLNLNAI 122
Query: 152 QFSEKHRAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTA 193
EYEPE PG+ YR+ PK + +F +G + VT
Sbjct: 123 AIGLGLENIEYEPEQFPGLVYRLDHPKVVVLLFGSGKLVVTG 164
>gi|341582887|ref|YP_004763379.1| transcription factor [Thermococcus sp. 4557]
gi|340810545|gb|AEK73702.1| transcription factor [Thermococcus sp. 4557]
Length = 190
Score = 70.5 bits (171), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 49/157 (31%), Positives = 80/157 (50%), Gaps = 8/157 (5%)
Query: 42 VDIIINNVVCSFSVRCHLNLRQIALNGVNVEYRREN--GMVTMKLRKPYTTASIWSSGKI 99
V + I N+V S + LNL ++ N +Y E G++ + +P I+SSGK+
Sbjct: 7 VKLRIENIVASVDLFTQLNLEKVIEICPNSKYNPEEFPGIIC-RFEEPKVALLIFSSGKL 65
Query: 100 TCTGATSEDQSKIAARRYARCLQRLGFK-ARFTNFRVVNVL--GTCSMPFAIRILQFSEK 156
TGA S + + A + + L+++G K AR + N++ G M F + + S
Sbjct: 66 VVTGAKSVEDIERAVNKLIQMLKKIGAKFARAPQIDIQNMVFSGDIGMEFNLDAVALSLP 125
Query: 157 HRAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTA 193
+ EYEPE PGV YR+ P+A + +FS+G I +
Sbjct: 126 N--CEYEPEQFPGVIYRVKEPRAVILLFSSGKIVCSG 160
Score = 53.1 bits (126), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 49/91 (53%), Gaps = 3/91 (3%)
Query: 37 AHDPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYRRENG-MVTMKLRKPYTTASIWS 95
A P++DI N+V S + NL +AL+ N EY E V ++++P ++S
Sbjct: 95 ARAPQIDI--QNMVFSGDIGMEFNLDAVALSLPNCEYEPEQFPGVIYRVKEPRAVILLFS 152
Query: 96 SGKITCTGATSEDQSKIAARRYARCLQRLGF 126
SGKI C+GA SE + A R+ R L++ G
Sbjct: 153 SGKIVCSGAKSEHDAWEAVRKLLRELEKYGL 183
Score = 38.5 bits (88), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 32/70 (45%)
Query: 131 TNFRVVNVLGTCSMPFAIRILQFSEKHRAAEYEPELHPGVTYRITRPKATLKIFSTGGIT 190
R+ N++ + + + + + E ++Y PE PG+ R PK L IFS+G +
Sbjct: 7 VKLRIENIVASVDLFTQLNLEKVIEICPNSKYNPEEFPGIICRFEEPKVALLIFSSGKLV 66
Query: 191 VTACNDSNKI 200
VT I
Sbjct: 67 VTGAKSVEDI 76
>gi|45357820|ref|NP_987377.1| transcription factor [Methanococcus maripaludis S2]
gi|340623439|ref|YP_004741892.1| transcription factor [Methanococcus maripaludis X1]
gi|56749680|sp|Q6M0L3.1|TBP_METMP RecName: Full=TATA-box-binding protein; AltName: Full=Box A-binding
protein; Short=BAP; AltName: Full=TATA sequence-binding
protein; Short=TBP; AltName: Full=TATA-box factor
gi|45047380|emb|CAF29813.1| TATA-binding protein (TBP) [Methanococcus maripaludis S2]
gi|339903707|gb|AEK19149.1| transcription factor [Methanococcus maripaludis X1]
Length = 181
Score = 70.5 bits (171), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 47/158 (29%), Positives = 77/158 (48%), Gaps = 7/158 (4%)
Query: 39 DPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYRREN--GMVTMKLRKPYTTASIWSS 96
+PE+ ++ NVV S + ++L A N EY E G+V +L +P I+ S
Sbjct: 2 EPEIKVV--NVVVSTQIGTDIDLEYAADILDNAEYEPEQFPGLVC-RLSEPKVALLIFRS 58
Query: 97 GKITCTGATSEDQSKIAARRYARCLQRLGFKARFT-NFRVVNVLGTCSMPFAIRILQFSE 155
GK+ CTGA ++ + IA + + L+ G +V N++ T + + S
Sbjct: 59 GKLNCTGARCKEDAVIAINKIVKELKEAGMDLIDNPEVKVQNMVATTELGMEPNLDDIS- 117
Query: 156 KHRAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTA 193
EYEPE PG+ YR++ PK + IF +G + +T
Sbjct: 118 TLECTEYEPEQFPGLVYRLSEPKVVVLIFGSGKVVITG 155
>gi|15791061|ref|NP_280885.1| transcription factor [Halobacterium sp. NRC-1]
gi|169236811|ref|YP_001690011.1| transcription factor [Halobacterium salinarum R1]
gi|14423951|sp|Q9HN56.1|TBPE_HALSA RecName: Full=TATA-box-binding protein E; AltName: Full=Box
A-binding protein E; Short=BAP E; AltName: Full=TATA
sequence-binding protein E; Short=TBP E; AltName:
Full=TATA-box factor E
gi|10581658|gb|AAG20365.1| transcription initiation factor IID [Halobacterium sp. NRC-1]
gi|167727877|emb|CAP14665.1| TATA-binding transcription initiation factor [Halobacterium
salinarum R1]
Length = 186
Score = 70.5 bits (171), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 47/160 (29%), Positives = 75/160 (46%), Gaps = 6/160 (3%)
Query: 39 DPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYRREN--GMVTMKLRKPYTTASIWSS 96
DP+ I I NVV S + L+L+ +A++ +Y E G+V + + P + A I+ S
Sbjct: 3 DPKETINIENVVASTGIGQELDLQSVAMDLEGADYDPEQFPGLV-YRTQDPKSAALIFRS 61
Query: 97 GKITCTGATSEDQSKIAARRYARCLQRLGFKARFT-NFRVVNVLGTCSM--PFAIRILQF 153
GKI CTGA S D + R L+ L K V N++ + + + +
Sbjct: 62 GKIVCTGAKSTDDVHESLRIVFDKLRELSIKVEDDPEIVVQNIVTSADLGRQLNLNAIAI 121
Query: 154 SEKHRAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTA 193
EYEPE PG+ YR+ P+ +F +G + +T
Sbjct: 122 GLGLENIEYEPEQFPGLVYRLDDPEVVALLFGSGKLVITG 161
Score = 45.4 bits (106), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 47/93 (50%), Gaps = 7/93 (7%)
Query: 38 HDPEVDIIINNVVCSFSVRCHLNLRQIALN-GV-NVEYRREN--GMVTMKLRKPYTTASI 93
DPE I++ N+V S + LNL IA+ G+ N+EY E G+V +L P A +
Sbjct: 95 DDPE--IVVQNIVTSADLGRQLNLNAIAIGLGLENIEYEPEQFPGLV-YRLDDPEVVALL 151
Query: 94 WSSGKITCTGATSEDQSKIAARRYARCLQRLGF 126
+ SGK+ TG ++ A + L+ LG
Sbjct: 152 FGSGKLVITGGKEPKDAEHAVDKITSRLEELGL 184
Score = 39.3 bits (90), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 31/64 (48%)
Query: 137 NVLGTCSMPFAIRILQFSEKHRAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTACND 196
NV+ + + + + + A+Y+PE PG+ YR PK+ IF +G I T
Sbjct: 12 NVVASTGIGQELDLQSVAMDLEGADYDPEQFPGLVYRTQDPKSAALIFRSGKIVCTGAKS 71
Query: 197 SNKI 200
++ +
Sbjct: 72 TDDV 75
>gi|374628586|ref|ZP_09700971.1| TATA binding protein of transcription factor TFIID [Methanoplanus
limicola DSM 2279]
gi|373906699|gb|EHQ34803.1| TATA binding protein of transcription factor TFIID [Methanoplanus
limicola DSM 2279]
Length = 186
Score = 70.5 bits (171), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 49/171 (28%), Positives = 84/171 (49%), Gaps = 20/171 (11%)
Query: 39 DPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYRREN--GMVTMKLRKPYTTASIWSS 96
+PE + I N+V S V L+L+ I + EY ++ G+V ++++ P A ++ S
Sbjct: 4 NPEDSLKIENIVASAKVADELDLQMINEEIKDAEYNKKRFPGVV-LRMQDPKIAALVFGS 62
Query: 97 GKITCTGATSEDQSKIAARRYARCLQRLGFKARF------TN--FRVVNVLGTCSM--PF 146
GK+ TGA S D +R L+ LG K R TN ++V N++ + + P
Sbjct: 63 GKVVLTGAKSIDN-------LSRGLEILGEKLRALKLDIPTNLEYKVQNIVTSADLGSPI 115
Query: 147 AIRILQFSEKHRAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTACNDS 197
+ + EYEPE PG+ YR+ PK + +F +G + +T ++
Sbjct: 116 NLNKIAVGFNLDRIEYEPEQFPGLVYRLEEPKVVVLLFGSGKLIITGGKET 166
>gi|409096743|ref|ZP_11216767.1| transcription factor [Thermococcus zilligii AN1]
Length = 191
Score = 70.5 bits (171), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 51/161 (31%), Positives = 77/161 (47%), Gaps = 13/161 (8%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYRREN--GMVTMKLRKPYTTASIWSSGKITCTG 103
I N+V S + LNL ++ N +Y E G++ + P I+SSGK+ TG
Sbjct: 11 IENIVASVDLFAQLNLEKVIEICPNSKYNPEEFPGIIC-RFDDPKVALLIFSSGKLVVTG 69
Query: 104 ATSEDQSKIAARRYARCL-QRLGFKARFTN---FRVVNVL--GTCSMPFAIRILQFSEKH 157
A S D K+ + L +++G RFT + N++ G M F + + S +
Sbjct: 70 AKSVDDIKMGVNKLIELLSKKVG--TRFTKPPQIDIQNMVFSGDIGMEFNLDAVALSLPN 127
Query: 158 RAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTACNDSN 198
EYEPE PGV YR+ PKA + +FS+G I + N
Sbjct: 128 --CEYEPEQFPGVIYRVKDPKAVILLFSSGKIVCSGAKSEN 166
Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 47/85 (55%), Gaps = 3/85 (3%)
Query: 40 PEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYRRENG-MVTMKLRKPYTTASIWSSGK 98
P++DI N+V S + NL +AL+ N EY E V +++ P ++SSGK
Sbjct: 99 PQIDI--QNMVFSGDIGMEFNLDAVALSLPNCEYEPEQFPGVIYRVKDPKAVILLFSSGK 156
Query: 99 ITCTGATSEDQSKIAARRYARCLQR 123
I C+GA SE+ + A +R R L++
Sbjct: 157 IVCSGAKSENDAWEAVKRLIRELEK 181
Score = 39.7 bits (91), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 35/74 (47%)
Query: 131 TNFRVVNVLGTCSMPFAIRILQFSEKHRAAEYEPELHPGVTYRITRPKATLKIFSTGGIT 190
R+ N++ + + + + + E ++Y PE PG+ R PK L IFS+G +
Sbjct: 7 VKLRIENIVASVDLFAQLNLEKVIEICPNSKYNPEEFPGIICRFDDPKVALLIFSSGKLV 66
Query: 191 VTACNDSNKIPVQI 204
VT + I + +
Sbjct: 67 VTGAKSVDDIKMGV 80
>gi|16081349|ref|NP_393677.1| transcription factor [Thermoplasma acidophilum DSM 1728]
gi|14423941|sp|Q9HLM8.1|TBP_THEAC RecName: Full=TATA-box-binding protein; AltName: Full=Box A-binding
protein; Short=BAP; AltName: Full=TATA sequence-binding
protein; Short=TBP; AltName: Full=TATA-box factor
gi|10639343|emb|CAC11345.1| probable TATA-box binding protein (TFIID homolog) [Thermoplasma
acidophilum]
Length = 184
Score = 70.5 bits (171), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 48/169 (28%), Positives = 81/169 (47%), Gaps = 20/169 (11%)
Query: 44 IIINNVVCSFSVRCHLNLRQIALNGVNVEYRREN--GMVTMKLRKPYTTASIWSSGKITC 101
I I N+V S S+ HL+L +IAL EY E G++ +L++P T I+ SGK+ C
Sbjct: 7 ITIENIVASTSLAEHLDLSRIALALDGSEYEPEQFPGLI-YRLQEPKTAVLIFRSGKVNC 65
Query: 102 TGATSEDQSKIAARRYARCLQRLGFKARFTNFRVV--------NVLGTCSMPFAIRI--L 151
TGA + + K R ++ + K + + V N++ + + + +
Sbjct: 66 TGAKNIEDVK-------RTIKIIIDKLKAADIEVYDDPQIIVQNIVAVYDLESELNLTDI 118
Query: 152 QFSEKHRAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
S EYEPE PG+ YR+ P+ L +F +G + T + ++I
Sbjct: 119 AMSLGLENVEYEPEQFPGLVYRVEEPRVVLLLFGSGKVVCTGAKEESEI 167
Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 53/93 (56%), Gaps = 7/93 (7%)
Query: 38 HDPEVDIIINNVVCSFSVRCHLNLRQIALN-GV-NVEYRREN--GMVTMKLRKPYTTASI 93
DP+ II+ N+V + + LNL IA++ G+ NVEY E G+V ++ +P +
Sbjct: 94 DDPQ--IIVQNIVAVYDLESELNLTDIAMSLGLENVEYEPEQFPGLV-YRVEEPRVVLLL 150
Query: 94 WSSGKITCTGATSEDQSKIAARRYARCLQRLGF 126
+ SGK+ CTGA E + + A + + LQ++G
Sbjct: 151 FGSGKVVCTGAKEESEIEQAVIKVKKELQKVGL 183
>gi|448441657|ref|ZP_21589264.1| transcription factor [Halorubrum saccharovorum DSM 1137]
gi|445688693|gb|ELZ40944.1| transcription factor [Halorubrum saccharovorum DSM 1137]
Length = 185
Score = 70.5 bits (171), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 46/159 (28%), Positives = 74/159 (46%), Gaps = 5/159 (3%)
Query: 39 DPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYRREN--GMVTMKLRKPYTTASIWSS 96
DP+ I I NVV S + L+L+ +A++ +Y E G+V + P + A I+ S
Sbjct: 3 DPKETITIENVVASTGIGQELDLQSVAMDLEGADYDPEQFPGLV-YRTTDPKSAALIFRS 61
Query: 97 GKITCTGATSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRI--LQFS 154
GKI CTGA S D + L++L V N++ + + ++ + +
Sbjct: 62 GKIVCTGANSIDAVHESLDLVFDELRKLQIPIEDPEITVQNIVTSADLGESLNLNAIAIG 121
Query: 155 EKHRAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTA 193
EYEPE PG+ YRI P +F +G + +T
Sbjct: 122 LGLEHIEYEPEQFPGLVYRIDDPDVVALLFGSGKLVITG 160
Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 47/97 (48%), Gaps = 7/97 (7%)
Query: 34 QPPAHDPEVDIIINNVVCSFSVRCHLNLRQIALN-GVN-VEYRREN--GMVTMKLRKPYT 89
Q P DPE I + N+V S + LNL IA+ G+ +EY E G+V ++ P
Sbjct: 90 QIPIEDPE--ITVQNIVTSADLGESLNLNAIAIGLGLEHIEYEPEQFPGLV-YRIDDPDV 146
Query: 90 TASIWSSGKITCTGATSEDQSKIAARRYARCLQRLGF 126
A ++ SGK+ TG T+ D + A L LG
Sbjct: 147 VALLFGSGKLVITGGTTPDDAAAAVDVIVEELDGLGL 183
Score = 42.4 bits (98), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 30/59 (50%)
Query: 137 NVLGTCSMPFAIRILQFSEKHRAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTACN 195
NV+ + + + + + A+Y+PE PG+ YR T PK+ IF +G I T N
Sbjct: 12 NVVASTGIGQELDLQSVAMDLEGADYDPEQFPGLVYRTTDPKSAALIFRSGKIVCTGAN 70
>gi|11497985|ref|NP_069209.1| transcription factor [Archaeoglobus fulgidus DSM 4304]
gi|6647869|sp|O29874.1|TBP_ARCFU RecName: Full=TATA-box-binding protein; AltName: Full=Box A-binding
protein; Short=BAP; AltName: Full=TATA sequence-binding
protein; Short=TBP; AltName: Full=TATA-box factor
gi|2650259|gb|AAB90862.1| transcription initiation factor IID [Archaeoglobus fulgidus DSM
4304]
Length = 183
Score = 70.5 bits (171), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 41/155 (26%), Positives = 81/155 (52%), Gaps = 6/155 (3%)
Query: 44 IIINNVVCSFSVRCHLNLRQIALNGVNVEYRREN--GMVTMKLRKPYTTASIWSSGKITC 101
I I NVV S + +++L +I+ + EY+ + G+V ++ ++P A ++ SGK+ C
Sbjct: 6 IKIENVVASTQIGENIDLNKISREIKDSEYKPKQFPGLV-LRTKEPKAAALVFRSGKVVC 64
Query: 102 TGATSEDQSKIAARRYARCLQRLGFKARFT-NFRVVNVLGTCSMPFAIRI--LQFSEKHR 158
TG+ S + ++ A ++ + L+ +G +V N++ + + + + +
Sbjct: 65 TGSKSVEDARRAVKQIVKMLKEIGISVIDEPEVKVQNIVASADLGVDLNLNAIAIGLGLE 124
Query: 159 AAEYEPELHPGVTYRITRPKATLKIFSTGGITVTA 193
EYEPE PG+ YR+ P+ + IF +G + VT
Sbjct: 125 NIEYEPEQFPGLVYRLDNPRVVVLIFGSGKMVVTG 159
Score = 45.8 bits (107), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 48/93 (51%), Gaps = 7/93 (7%)
Query: 38 HDPEVDIIINNVVCSFSVRCHLNLRQIALN-GV-NVEYRREN--GMVTMKLRKPYTTASI 93
+PEV + N+V S + LNL IA+ G+ N+EY E G+V +L P I
Sbjct: 93 DEPEVKV--QNIVASADLGVDLNLNAIAIGLGLENIEYEPEQFPGLV-YRLDNPRVVVLI 149
Query: 94 WSSGKITCTGATSEDQSKIAARRYARCLQRLGF 126
+ SGK+ TG S + ++ A R + L+ LG
Sbjct: 150 FGSGKMVVTGGKSPEDARKAVERISEELRTLGL 182
>gi|298712244|emb|CBJ26695.1| transcription initiation factor TFIID [Ectocarpus siliculosus]
Length = 214
Score = 70.5 bits (171), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 44/171 (25%), Positives = 87/171 (50%), Gaps = 10/171 (5%)
Query: 38 HDPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSS 96
P V +++ NV + ++R ++ +A + EY ++ V M++R+P T ++SS
Sbjct: 27 QQPVVRVVLQNVTATVNMRITIDPSSLANKIRHAEYNPKKLPAVVMRIREPQATGLLFSS 86
Query: 97 GKITCTGATSEDQSKIAARRYARCLQRLGFKARFTN-----FRVVNVLGTCSM--PFAIR 149
GK+ TGA + ++ AA+R+ ++ +G TN F V N++ T + P ++
Sbjct: 87 GKVVITGAAGVEAAREAAQRFVAVVEGVGLNPT-TNPNQLRFAVQNMVATFEVDAPISLE 145
Query: 150 ILQFSEKHRAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
++ + + R YEPEL PG+ Y+ +FS+G + +T + +
Sbjct: 146 LMAYCQA-RWCMYEPELFPGLIYQTAHRGVVAHVFSSGRVVLTGGKQEDHL 195
>gi|222481286|ref|YP_002567522.1| transcription factor [Halorubrum lacusprofundi ATCC 49239]
gi|222454662|gb|ACM58925.1| TATA-box binding family protein [Halorubrum lacusprofundi ATCC
49239]
Length = 186
Score = 70.1 bits (170), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 46/155 (29%), Positives = 71/155 (45%), Gaps = 6/155 (3%)
Query: 44 IIINNVVCSFSVRCHLNLRQIALNGVNVEYRREN--GMVTMKLRKPYTTASIWSSGKITC 101
I I NVV S + L+L + + E+ +N G+V + + P A I+ SGKI C
Sbjct: 8 IEIQNVVASTGIDQELDLETLVDDIPGAEFNPDNFPGLVD-RTQDPKAAALIFRSGKIVC 66
Query: 102 TGATSEDQSKIAARRYARCLQRLGFKARFT-NFRVVNVLGTCSMPFAIRI--LQFSEKHR 158
TGA S D A L+ LG + V N++ + + + + + L
Sbjct: 67 TGAASVDDVHEALEIIFEKLRELGIPVTDSPEITVQNIVSSADLGYDLNLNALAIGLGLE 126
Query: 159 AAEYEPELHPGVTYRITRPKATLKIFSTGGITVTA 193
EYEPE PG+ YR+ P + +F +G I +T
Sbjct: 127 DVEYEPEQFPGLVYRMEDPGVVILLFGSGKIVITG 161
>gi|295862201|gb|ADG54825.1| CG18009 [Drosophila teissieri]
Length = 240
Score = 70.1 bits (170), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 37/72 (51%), Positives = 46/72 (63%), Gaps = 4/72 (5%)
Query: 5 GMTTTHSSHSEQEPPPTQTVVPIQNHAPPQPPAHD--PEVDIIINNVVCSFSVRCHLNLR 62
G ++ ++ S + P Q V N+A + A D PE+DI+INNVVCSFSV CHL LR
Sbjct: 171 GESSNNAKSSVDQQPENQPVT--LNNAANEGNASDDEPELDIVINNVVCSFSVGCHLKLR 228
Query: 63 QIALNGVNVEYR 74
IAL G NVEYR
Sbjct: 229 DIALQGSNVEYR 240
>gi|330507959|ref|YP_004384387.1| transcription factor TFIID [Methanosaeta concilii GP6]
gi|328928767|gb|AEB68569.1| transcription factor TFIID [Methanosaeta concilii GP6]
Length = 183
Score = 70.1 bits (170), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 50/172 (29%), Positives = 80/172 (46%), Gaps = 13/172 (7%)
Query: 41 EVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYRREN--GMVTMKLRKPYTTASIWSSGK 98
E I I NVV S + +L +I EY +E G+V +++ P I++SGK
Sbjct: 2 ESTINIENVVASTKLAEEFDLHKIEAELEGAEYNKEKFPGLV-YRVKAPRAAFLIFTSGK 60
Query: 99 ITCTGATSEDQSKIAARRYARCLQRLGFKARFTN--FRVVNVLGTCSMPFAIRI--LQFS 154
+ CTGA + + + A+ L+ +GF+ V N++ + + + + +
Sbjct: 61 VVCTGAKNVEDVRTVITNMAQTLKSIGFENIDLEPEIHVQNIVASADLKTDLNLNAIALG 120
Query: 155 EKHRAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTA------CNDSNKI 200
EYEPE PG+ YRI PK + IFS+G + VT C + KI
Sbjct: 121 LGLENIEYEPEQFPGLVYRIKTPKVVVLIFSSGKLVVTGGKSPEECEEGVKI 172
Score = 45.4 bits (106), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 49/92 (53%), Gaps = 5/92 (5%)
Query: 39 DPEVDIIINNVVCSFSVRCHLNLRQIALN-GV-NVEYRREN--GMVTMKLRKPYTTASIW 94
D E +I + N+V S ++ LNL IAL G+ N+EY E G+V +++ P I+
Sbjct: 92 DLEPEIHVQNIVASADLKTDLNLNAIALGLGLENIEYEPEQFPGLV-YRIKTPKVVVLIF 150
Query: 95 SSGKITCTGATSEDQSKIAARRYARCLQRLGF 126
SSGK+ TG S ++ + + L+ +G
Sbjct: 151 SSGKLVVTGGKSPEECEEGVKIVREQLENMGL 182
>gi|448726142|ref|ZP_21708556.1| transcription factor [Halococcus morrhuae DSM 1307]
gi|445796094|gb|EMA46606.1| transcription factor [Halococcus morrhuae DSM 1307]
Length = 204
Score = 70.1 bits (170), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 48/155 (30%), Positives = 70/155 (45%), Gaps = 6/155 (3%)
Query: 38 HDPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYRREN--GMVTMKLRKPYTTASIWS 95
+DP+ + I NVV S V LNL +A++ ++ R+ G+V +++ P+ A I+
Sbjct: 20 NDPKETLEIQNVVASTVVSQELNLESVAMDLEGADFDRDKFPGVV-YRVQDPHAVALIFR 78
Query: 96 SGKITCTGATSEDQSKIAARRYARCLQRLGFKARFT-NFRVVNVL--GTCSMPFAIRILQ 152
SGKI CTGA S A L LG N V N++ G + +
Sbjct: 79 SGKIVCTGAGSVPAVHEALEIVFETLSDLGIDVSENPNTEVQNIVTSGDLGERLNLNAIA 138
Query: 153 FSEKHRAAEYEPELHPGVTYRITRPKATLKIFSTG 187
EYEPE PG+ YR+ P +F TG
Sbjct: 139 IGLGLEDVEYEPEQFPGLVYRLDEPDVVALLFGTG 173
>gi|354609688|ref|ZP_09027644.1| TATA-box-binding protein [Halobacterium sp. DL1]
gi|353194508|gb|EHB60010.1| TATA-box-binding protein [Halobacterium sp. DL1]
Length = 186
Score = 70.1 bits (170), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 46/160 (28%), Positives = 76/160 (47%), Gaps = 6/160 (3%)
Query: 39 DPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYRREN--GMVTMKLRKPYTTASIWSS 96
DP+ I + NVV S + L+L+ +A++ +Y E G+V + ++P + A I+ S
Sbjct: 3 DPKETINVENVVASTGIGQELDLQSVAMDLEGADYDPEQFPGLV-YRTQEPKSAALIFRS 61
Query: 97 GKITCTGATSEDQSKIAARRYARCLQRLGFKARFT-NFRVVNVLGTCSM--PFAIRILQF 153
GKI CTGA S D + R L+ L K V N++ + + + +
Sbjct: 62 GKIVCTGAKSTDDVHESLRIVFDKLRDLSIKVEDEPEIVVQNIVTSADLGRQLNLNAIAI 121
Query: 154 SEKHRAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTA 193
EYEPE PG+ YR+ P+ +F +G + +T
Sbjct: 122 GLGLENIEYEPEQFPGLVYRLDEPEVVALLFGSGKLVITG 161
Score = 45.4 bits (106), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 49/92 (53%), Gaps = 5/92 (5%)
Query: 39 DPEVDIIINNVVCSFSVRCHLNLRQIALN-GV-NVEYRREN--GMVTMKLRKPYTTASIW 94
+ E +I++ N+V S + LNL IA+ G+ N+EY E G+V +L +P A ++
Sbjct: 94 EDEPEIVVQNIVTSADLGRQLNLNAIAIGLGLENIEYEPEQFPGLV-YRLDEPEVVALLF 152
Query: 95 SSGKITCTGATSEDQSKIAARRYARCLQRLGF 126
SGK+ TG + ++ A + L+ LG
Sbjct: 153 GSGKLVITGGKKPEDAEHAVDKIVSRLEELGL 184
Score = 40.0 bits (92), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 32/66 (48%)
Query: 135 VVNVLGTCSMPFAIRILQFSEKHRAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTAC 194
V NV+ + + + + + A+Y+PE PG+ YR PK+ IF +G I T
Sbjct: 10 VENVVASTGIGQELDLQSVAMDLEGADYDPEQFPGLVYRTQEPKSAALIFRSGKIVCTGA 69
Query: 195 NDSNKI 200
++ +
Sbjct: 70 KSTDDV 75
>gi|126179334|ref|YP_001047299.1| transcription factor [Methanoculleus marisnigri JR1]
gi|125862128|gb|ABN57317.1| TATA binding protein of transcription factor TFIID [Methanoculleus
marisnigri JR1]
Length = 187
Score = 70.1 bits (170), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 46/168 (27%), Positives = 80/168 (47%), Gaps = 20/168 (11%)
Query: 38 HDPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYRREN--GMVTMKLRKPYTTASIWS 95
H PE + I N+V S V L+L +A + EY ++ G+V ++++ P A ++
Sbjct: 4 HRPEESLKIENIVASAKVTDSLDLPSLASRLKDAEYNKKRFPGVV-LRMQDPKIAALVFG 62
Query: 96 SGKITCTGATSEDQSKIAARRYARCLQRLGFKARFTN--------FRVVNVLGTCSM--P 145
SGK+ TGA S D +R LQ L + R + +++ N++ + + P
Sbjct: 63 SGKVVLTGAKSIDN-------LSRGLQILADQLRALDIDIPENPEYKIQNIVTSADLGTP 115
Query: 146 FAIRILQFSEKHRAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTA 193
+ + EYEPE PG+ YR+ PK + +F +G + +T
Sbjct: 116 INLNKIAVGFNLDKIEYEPEQFPGLVYRLDDPKVVVLLFGSGKLIITG 163
>gi|14423938|sp|P58177.1|TBP_PYROC RecName: Full=TATA-box-binding protein; AltName: Full=Box A-binding
protein; Short=BAP; AltName: Full=TATA sequence-binding
protein; Short=TBP; AltName: Full=TATA-box factor
gi|13752554|gb|AAK38723.1|AF367981_1 TATA-binding protein [Pyrodictium occultum]
Length = 199
Score = 69.7 bits (169), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 52/198 (26%), Positives = 90/198 (45%), Gaps = 26/198 (13%)
Query: 6 MTTTHSSHSEQEPPPTQTVVPIQNHAPPQPPAHDPEVDIIINNVVCSFSVRCHLNLRQIA 65
+T S +EQEP PT I N+V + S+ L+L I
Sbjct: 5 VTPQRRSAAEQEPKPTAN----------------------IENIVATVSLDQTLDLNLIE 42
Query: 66 LNGVNVEYRREN--GMVTMKLRKPYTTASIWSSGKITCTGATSEDQSKIAARRYARCLQR 123
+ + VEY E G+V +L P TA I+ SGK+ TGA S A ++ R L++
Sbjct: 43 RSILTVEYNPEQFPGLV-YRLDSPKVTALIFKSGKMVVTGAKSTRDLIEAVKKIVRNLKK 101
Query: 124 LGFKARFT-NFRVVNVLGTCSMPFAIRILQFSEKHRAAEYEPELHPGVTYRITRPKATLK 182
G + ++ N++ + ++ + + + + + YEPE PG+ +R+ P+ L
Sbjct: 102 HGIQIYGRPKVQIQNIVASANLNVCVDLERAALTLENSMYEPEQFPGLIHRMDEPRVVLL 161
Query: 183 IFSTGGITVTACNDSNKI 200
IFS+G + +T ++
Sbjct: 162 IFSSGKMVITGAKREEEV 179
>gi|159905083|ref|YP_001548745.1| transcription factor [Methanococcus maripaludis C6]
gi|226703561|sp|A9A840.1|TBP_METM6 RecName: Full=TATA-box-binding protein; AltName: Full=Box A-binding
protein; Short=BAP; AltName: Full=TATA sequence-binding
protein; Short=TBP; AltName: Full=TATA-box factor
gi|159886576|gb|ABX01513.1| TATA-box binding family protein [Methanococcus maripaludis C6]
Length = 181
Score = 69.7 bits (169), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 48/158 (30%), Positives = 76/158 (48%), Gaps = 7/158 (4%)
Query: 39 DPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYRREN--GMVTMKLRKPYTTASIWSS 96
+PE+ I+ NVV S + ++L A N EY E G+V +L +P I+ S
Sbjct: 2 EPEIKIV--NVVVSTQIGTDIDLEYAADILDNAEYEPEQFPGLVC-RLSEPKVALLIFRS 58
Query: 97 GKITCTGATSEDQSKIAARRYARCLQRLGFKARFT-NFRVVNVLGTCSMPFAIRILQFSE 155
GK+ CTGA ++ + IA + + L+ G V N++ T + + S
Sbjct: 59 GKLNCTGAKCKEDAVIAIHKIIKELKEAGMDLIDNPEVNVQNMVATTELGMEPNLDDIS- 117
Query: 156 KHRAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTA 193
EYEPE PG+ YR++ PK + IF +G + +T
Sbjct: 118 TLECTEYEPEQFPGLVYRLSDPKVVVLIFGSGKVVITG 155
>gi|295862191|gb|ADG54820.1| CG18009 [Drosophila teissieri]
gi|295862203|gb|ADG54826.1| CG18009 [Drosophila teissieri]
Length = 240
Score = 69.7 bits (169), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 36/72 (50%), Positives = 46/72 (63%), Gaps = 4/72 (5%)
Query: 5 GMTTTHSSHSEQEPPPTQTVVPIQNHAPPQPPAHD--PEVDIIINNVVCSFSVRCHLNLR 62
G ++ ++ S + P Q + N+A + A D PE+DI+INNVVCSFSV CHL LR
Sbjct: 171 GESSNNAKSSGDQQPENQPMT--LNNAANEGNASDDEPELDIVINNVVCSFSVGCHLKLR 228
Query: 63 QIALNGVNVEYR 74
IAL G NVEYR
Sbjct: 229 DIALQGSNVEYR 240
>gi|383318805|ref|YP_005379646.1| TATA-box binding protein (TBP), component of TFIID and TFIIIB
[Methanocella conradii HZ254]
gi|379320175|gb|AFC99127.1| TATA-box binding protein (TBP), component of TFIID and TFIIIB
[Methanocella conradii HZ254]
Length = 188
Score = 69.7 bits (169), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 79/162 (48%), Gaps = 6/162 (3%)
Query: 37 AHDPEVDIIINNVVCSFSVRCHLNLRQI--ALNGVNVEYRRENGMVTMKLRKPYTTASIW 94
A + + I I NVV S ++ ++L+ + AL G + + + G+V + + P T A I+
Sbjct: 4 AEEAKKTITIENVVASTAIGQEIDLKSVTLALEGADYDPEQFPGLV-YRTKDPKTAALIF 62
Query: 95 SSGKITCTGATSEDQSKIAARRYARCLQRLGFKARFT-NFRVVNVLGTCSMPFAIRI--L 151
SGKI CTGA S + ++ + + +G K V N++ + + + + +
Sbjct: 63 RSGKIVCTGAKSIEDVDRGLKKVFKKIASVGIKVDPNPEITVQNIVASADLGSVLNLNAI 122
Query: 152 QFSEKHRAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTA 193
EYEPE PG+ YR+ PK + +F +G + VT
Sbjct: 123 AIGLGLENIEYEPEQFPGLVYRLDSPKVVVLLFGSGKLVVTG 164
Score = 43.5 bits (101), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 45/92 (48%), Gaps = 5/92 (5%)
Query: 39 DPEVDIIINNVVCSFSVRCHLNLRQIALN-GV-NVEYRREN--GMVTMKLRKPYTTASIW 94
DP +I + N+V S + LNL IA+ G+ N+EY E G+V +L P ++
Sbjct: 97 DPNPEITVQNIVASADLGSVLNLNAIAIGLGLENIEYEPEQFPGLV-YRLDSPKVVVLLF 155
Query: 95 SSGKITCTGATSEDQSKIAARRYARCLQRLGF 126
SGK+ TG ++ A R + L+ L
Sbjct: 156 GSGKLVVTGGKKPKDAEEAVERIVKELEGLAL 187
>gi|295862205|gb|ADG54827.1| CG18009 [Drosophila teissieri]
Length = 240
Score = 69.7 bits (169), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 36/72 (50%), Positives = 46/72 (63%), Gaps = 4/72 (5%)
Query: 5 GMTTTHSSHSEQEPPPTQTVVPIQNHAPPQPPAHD--PEVDIIINNVVCSFSVRCHLNLR 62
G ++ ++ S + P Q + N+A + A D PE+DI+INNVVCSFSV CHL LR
Sbjct: 171 GESSNNAKSSGDQQPENQPMT--LNNAANEGNASDDEPELDIVINNVVCSFSVGCHLKLR 228
Query: 63 QIALNGVNVEYR 74
IAL G NVEYR
Sbjct: 229 DIALQGSNVEYR 240
>gi|295862207|gb|ADG54828.1| CG18009 [Drosophila teissieri]
Length = 240
Score = 69.7 bits (169), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 36/72 (50%), Positives = 46/72 (63%), Gaps = 4/72 (5%)
Query: 5 GMTTTHSSHSEQEPPPTQTVVPIQNHAPPQPPAHD--PEVDIIINNVVCSFSVRCHLNLR 62
G ++ ++ S + P Q + N+A + A D PE+DI+INNVVCSFSV CHL LR
Sbjct: 171 GESSNNAKSSGDQQPENQPMT--LNNAANEGNASDDEPELDIVINNVVCSFSVGCHLKLR 228
Query: 63 QIALNGVNVEYR 74
IAL G NVEYR
Sbjct: 229 DIALQGSNVEYR 240
>gi|295862187|gb|ADG54818.1| CG18009 [Drosophila teissieri]
gi|295862193|gb|ADG54821.1| CG18009 [Drosophila teissieri]
gi|295862195|gb|ADG54822.1| CG18009 [Drosophila teissieri]
gi|295862197|gb|ADG54823.1| CG18009 [Drosophila teissieri]
gi|295862209|gb|ADG54829.1| CG18009 [Drosophila teissieri]
gi|295862211|gb|ADG54830.1| CG18009 [Drosophila teissieri]
gi|295862213|gb|ADG54831.1| CG18009 [Drosophila teissieri]
gi|295862215|gb|ADG54832.1| CG18009 [Drosophila teissieri]
Length = 240
Score = 69.7 bits (169), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 36/72 (50%), Positives = 46/72 (63%), Gaps = 4/72 (5%)
Query: 5 GMTTTHSSHSEQEPPPTQTVVPIQNHAPPQPPAHD--PEVDIIINNVVCSFSVRCHLNLR 62
G ++ ++ S + P Q + N+A + A D PE+DI+INNVVCSFSV CHL LR
Sbjct: 171 GESSNNAKSSGDQQPENQPMT--LNNAANEGNASDDEPELDIVINNVVCSFSVGCHLKLR 228
Query: 63 QIALNGVNVEYR 74
IAL G NVEYR
Sbjct: 229 DIALQGSNVEYR 240
>gi|134046443|ref|YP_001097928.1| transcription factor [Methanococcus maripaludis C5]
gi|132664068|gb|ABO35714.1| TATA binding protein of transcription factor TFIID [Methanococcus
maripaludis C5]
Length = 181
Score = 69.7 bits (169), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 48/158 (30%), Positives = 75/158 (47%), Gaps = 7/158 (4%)
Query: 39 DPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYRREN--GMVTMKLRKPYTTASIWSS 96
+PE+ I+ NVV S + ++L A N EY E G+V +L P I+ S
Sbjct: 2 EPEIKIV--NVVVSTQIGTDIDLEYAADILDNAEYEPEQFPGLVC-RLSDPKVALLIFRS 58
Query: 97 GKITCTGATSEDQSKIAARRYARCLQRLGFKARFT-NFRVVNVLGTCSMPFAIRILQFSE 155
GK+ CTGA ++ + IA + + L+ G V N++ T + + S
Sbjct: 59 GKLNCTGAKCKEDAVIAINKITKELKEAGMDLIDNPEVNVQNMVATTELGMEPNLDDIS- 117
Query: 156 KHRAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTA 193
EYEPE PG+ YR++ PK + IF +G + +T
Sbjct: 118 TLECTEYEPEQFPGLVYRLSDPKVVVLIFGSGKVVITG 155
>gi|448577353|ref|ZP_21642983.1| transcription factor [Haloferax larsenii JCM 13917]
gi|445727998|gb|ELZ79607.1| transcription factor [Haloferax larsenii JCM 13917]
Length = 188
Score = 69.7 bits (169), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 51/167 (30%), Positives = 76/167 (45%), Gaps = 13/167 (7%)
Query: 37 AHDPEVDII-INNVVCSFSVRCHLNLRQIALNGVNVEYRREN--GMVTMKLRKPYTTASI 93
+H+ +D + I NVV S +V L+L ++ + E+ +N G+V + + P I
Sbjct: 2 SHEARLDSLEIQNVVASSAVGLELDLESLSDDVPGAEFNPDNFPGLV-YRTQDPRAANLI 60
Query: 94 WSSGKITCTGATSEDQSKIAARRYARCLQRLGF------KARFTNFRVVNVLGTCSMPFA 147
+ SGKI CTGA+S D+ A + L LG +A N LGT
Sbjct: 61 FRSGKIVCTGASSVDEVNQALEQVFEELGSLGIPIDGREEATVQNIVSSADLGTT---LN 117
Query: 148 IRILQFSEKHRAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTAC 194
+ L EYEPE PG+ YRI P + +F +G I +T
Sbjct: 118 LNALAIGLGLEHVEYEPEQFPGLVYRIDEPNVVVLLFGSGKIVITGA 164
Score = 43.9 bits (102), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 38/74 (51%)
Query: 127 KARFTNFRVVNVLGTCSMPFAIRILQFSEKHRAAEYEPELHPGVTYRITRPKATLKIFST 186
+AR + + NV+ + ++ + + S+ AE+ P+ PG+ YR P+A IF +
Sbjct: 4 EARLDSLEIQNVVASSAVGLELDLESLSDDVPGAEFNPDNFPGLVYRTQDPRAANLIFRS 63
Query: 187 GGITVTACNDSNKI 200
G I T + +++
Sbjct: 64 GKIVCTGASSVDEV 77
>gi|212224460|ref|YP_002307696.1| transcription factor [Thermococcus onnurineus NA1]
gi|226703563|sp|B6YXI6.1|TBP_THEON RecName: Full=TATA-box-binding protein; AltName: Full=Box A-binding
protein; Short=BAP; AltName: Full=TATA sequence-binding
protein; Short=TBP; AltName: Full=TATA-box factor
gi|212009417|gb|ACJ16799.1| TATA-box binding protein (TBP), component of TFIID and TFIIIB
[Thermococcus onnurineus NA1]
Length = 192
Score = 69.7 bits (169), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 49/157 (31%), Positives = 79/157 (50%), Gaps = 8/157 (5%)
Query: 42 VDIIINNVVCSFSVRCHLNLRQIALNGVNVEYRREN--GMVTMKLRKPYTTASIWSSGKI 99
V + I N+V S + LNL ++ N +Y E G++ + +P I+SSGK+
Sbjct: 7 VKLRIENIVASVDLFTQLNLEKVIEICPNSKYNPEEFPGIIC-RFEEPKVALLIFSSGKL 65
Query: 100 TCTGATSEDQSKIAARRYARCLQRLGFK-ARFTNFRVVNVL--GTCSMPFAIRILQFSEK 156
TGA S + + A + + L+R+G K R + N++ G M F + + S
Sbjct: 66 VVTGAKSVEDIERAVNKLIQMLKRIGAKFQRAPQIDIQNMVFSGDIGMEFNLDAVALSLP 125
Query: 157 HRAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTA 193
+ EYEPE PGV YR+ P+A + +FS+G I +
Sbjct: 126 N--CEYEPEQFPGVIYRVKEPRAVILLFSSGKIVCSG 160
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 48/88 (54%), Gaps = 3/88 (3%)
Query: 40 PEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYRRENG-MVTMKLRKPYTTASIWSSGK 98
P++DI N+V S + NL +AL+ N EY E V ++++P ++SSGK
Sbjct: 98 PQIDI--QNMVFSGDIGMEFNLDAVALSLPNCEYEPEQFPGVIYRVKEPRAVILLFSSGK 155
Query: 99 ITCTGATSEDQSKIAARRYARCLQRLGF 126
I C+GA SE + A R+ R L++ G
Sbjct: 156 IVCSGAKSEHDAWEAVRKLLRELEKYGL 183
Score = 38.5 bits (88), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 32/70 (45%)
Query: 131 TNFRVVNVLGTCSMPFAIRILQFSEKHRAAEYEPELHPGVTYRITRPKATLKIFSTGGIT 190
R+ N++ + + + + + E ++Y PE PG+ R PK L IFS+G +
Sbjct: 7 VKLRIENIVASVDLFTQLNLEKVIEICPNSKYNPEEFPGIICRFEEPKVALLIFSSGKLV 66
Query: 191 VTACNDSNKI 200
VT I
Sbjct: 67 VTGAKSVEDI 76
>gi|221057235|ref|XP_002259755.1| transcription initiation factor TFiid,TATA-binding protein
[Plasmodium knowlesi strain H]
gi|193809827|emb|CAQ40531.1| transcription initiation factor TFiid,TATA-binding protein,
putative [Plasmodium knowlesi strain H]
Length = 250
Score = 69.3 bits (168), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 43/164 (26%), Positives = 88/164 (53%), Gaps = 12/164 (7%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYR--RENGMVTMKLRKPYTTASIWSSGKITCTG 103
I+N++ S ++ ++LR +A++ N EY + N ++ ++L KP T I+ SG++ TG
Sbjct: 74 IHNIIASANLSVDIDLRLVAISIRNAEYNPSKINTLI-VRLNKPKCTVLIFKSGRLMLTG 132
Query: 104 ATSEDQSKIAARRYARCLQRLGFK-ARFTNFRVVNVLGT--CSMPFAIRILQFSEKHRA- 159
++ + ++ + ++ + + + F + N++ + C+MP IR+ + H+
Sbjct: 133 TKTKADAIYGCKKIGKIIKLVTNEPVKLEGFNIENIIASADCNMP--IRLEMLAHDHKDY 190
Query: 160 AEYEPELHPGVTYRI---TRPKATLKIFSTGGITVTACNDSNKI 200
YEPEL G+ YR ++ K+ + IF +G I +T C K+
Sbjct: 191 CNYEPELFAGLVYRYKPTSKLKSVILIFVSGKIIITGCKSVQKL 234
>gi|386001066|ref|YP_005919365.1| TATA-box-binding protein [Methanosaeta harundinacea 6Ac]
gi|357209122|gb|AET63742.1| TATA-box-binding protein [Methanosaeta harundinacea 6Ac]
Length = 183
Score = 69.3 bits (168), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 54/175 (30%), Positives = 83/175 (47%), Gaps = 19/175 (10%)
Query: 41 EVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYRREN--GMVTMKLRKPYTTASIWSSGK 98
E I I NVV S + +L +I EY +E G+V +++ P I++SGK
Sbjct: 2 ESTINIENVVASTKLAEEFDLIKIEAELEGAEYNKEKFPGLV-YRVKSPRAAFLIFTSGK 60
Query: 99 ITCTGATSEDQSKIAARRYARCLQRLGFKARFTN--FRVVNVLGTCSM-----PFAIRIL 151
+ CTGA + + + A+ L+ +GF+ + V N++ + + P AI +
Sbjct: 61 VVCTGAKNVEDVRTVITNMAQTLKSIGFEDVNLDPEIHVQNIVASADLKTDLNPNAIALG 120
Query: 152 QFSEKHRAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTA------CNDSNKI 200
E EYEPE PG+ YRI PK + IFS+G + VT C + KI
Sbjct: 121 LGLEN---IEYEPEQFPGLVYRIKTPKVVVLIFSSGKLVVTGGKSPEECEEGVKI 172
Score = 42.0 bits (97), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 48/92 (52%), Gaps = 7/92 (7%)
Query: 39 DPEVDIIINNVVCSFSVRCHLNLRQIALN-GV-NVEYRREN--GMVTMKLRKPYTTASIW 94
DPE+ + N+V S ++ LN IAL G+ N+EY E G+V +++ P I+
Sbjct: 94 DPEIHV--QNIVASADLKTDLNPNAIALGLGLENIEYEPEQFPGLV-YRIKTPKVVVLIF 150
Query: 95 SSGKITCTGATSEDQSKIAARRYARCLQRLGF 126
SSGK+ TG S ++ + + L+ LG
Sbjct: 151 SSGKLVVTGGKSPEECEEGVKIVRVQLENLGL 182
>gi|156094392|ref|XP_001613233.1| transcription initiation factor TFiid, TATA-binding protein
[Plasmodium vivax Sal-1]
gi|148802107|gb|EDL43506.1| transcription initiation factor TFiid, TATA-binding protein,
putative [Plasmodium vivax]
Length = 250
Score = 69.3 bits (168), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 43/163 (26%), Positives = 88/163 (53%), Gaps = 10/163 (6%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYR--RENGMVTMKLRKPYTTASIWSSGKITCTG 103
I+N++ S ++ ++LR +A++ N EY + N ++ ++L KP TA I+ +G+I TG
Sbjct: 74 IHNIIASANLCVDIDLRLVAISIRNAEYNPSKINTLI-VRLNKPKCTALIFKNGRIMLTG 132
Query: 104 ATSEDQSKIAARRYARCLQRLGFKA-RFTNFRVVNVLGT--CSMPFAIRILQFSEKHRAA 160
++ + ++ + ++ + ++ + F + N++ + C+MP + +L K
Sbjct: 133 TKTKADAIYGCKKIGKIIKLVTNESVKLEGFNIENIIASADCNMPVRLEMLAHDHKEY-C 191
Query: 161 EYEPELHPGVTYRI---TRPKATLKIFSTGGITVTACNDSNKI 200
YEPEL G+ YR ++ K+ + IF +G I +T C K+
Sbjct: 192 NYEPELFAGLVYRYKPTSKLKSVILIFVSGKIIITGCKSVQKL 234
>gi|448462784|ref|ZP_21597843.1| transcription factor [Halorubrum kocurii JCM 14978]
gi|445818005|gb|EMA67873.1| transcription factor [Halorubrum kocurii JCM 14978]
Length = 185
Score = 69.3 bits (168), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 48/161 (29%), Positives = 75/161 (46%), Gaps = 9/161 (5%)
Query: 39 DPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYRREN--GMVTMKLRKPYTTASIWSS 96
DP+ I I NVV S + L+L+ +A++ +Y E G+V + P + A I+ S
Sbjct: 3 DPKETITIENVVASTGIGQELDLQSVAMDLEGADYDPEQFPGLV-YRTTDPKSAALIFRS 61
Query: 97 GKITCTGATSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRI----LQ 152
GKI CTGA S D + L+ L V N++ + + ++ + +
Sbjct: 62 GKIVCTGANSIDAVHESLALVFDELRALQIPIEDPEITVQNIVTSADLGESLNLNAIAIG 121
Query: 153 FSEKHRAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTA 193
+H EYEPE PG+ YRI P +F +G + VT
Sbjct: 122 LGLEH--IEYEPEQFPGLVYRIDEPDVVALLFGSGKLVVTG 160
Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 49/99 (49%), Gaps = 7/99 (7%)
Query: 34 QPPAHDPEVDIIINNVVCSFSVRCHLNLRQIALN-GVN-VEYRREN--GMVTMKLRKPYT 89
Q P DPE I + N+V S + LNL IA+ G+ +EY E G+V ++ +P
Sbjct: 90 QIPIEDPE--ITVQNIVTSADLGESLNLNAIAIGLGLEHIEYEPEQFPGLV-YRIDEPDV 146
Query: 90 TASIWSSGKITCTGATSEDQSKIAARRYARCLQRLGFKA 128
A ++ SGK+ TG TS D + A L LG A
Sbjct: 147 VALLFGSGKLVVTGGTSPDDAAAAVDVIVEELDGLGLLA 185
Score = 42.0 bits (97), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 32/64 (50%)
Query: 137 NVLGTCSMPFAIRILQFSEKHRAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTACND 196
NV+ + + + + + A+Y+PE PG+ YR T PK+ IF +G I T N
Sbjct: 12 NVVASTGIGQELDLQSVAMDLEGADYDPEQFPGLVYRTTDPKSAALIFRSGKIVCTGANS 71
Query: 197 SNKI 200
+ +
Sbjct: 72 IDAV 75
>gi|448302509|ref|ZP_21492488.1| transcription factor [Natronorubrum tibetense GA33]
gi|445581175|gb|ELY35537.1| transcription factor [Natronorubrum tibetense GA33]
Length = 186
Score = 69.3 bits (168), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 47/159 (29%), Positives = 78/159 (49%), Gaps = 7/159 (4%)
Query: 42 VDII-INNVVCSFSVRCHLNLRQIALNGVNVEYRREN--GMVTMKLRKPYTTASIWSSGK 98
VD I I NVV S V L L + + +V+Y ++ G++ +L+ P T ++ +GK
Sbjct: 5 VDTIEIQNVVASTGVGQELELDALGQDLDDVQYDPDHFPGLI-YRLQDPKATVLLFRTGK 63
Query: 99 ITCTGATSEDQSKIAARRYARCLQRLGFKA-RFTNFRVVNVLGTCSMP--FAIRILQFSE 155
I CTGATS + A + L+ LG +A V N++ + + +
Sbjct: 64 IVCTGATSVHNVQTALQDVFDTLRSLGIEAPADREITVQNIVSNADLDRQLNLNAIAIGL 123
Query: 156 KHRAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTAC 194
EYEPE PG+ YR+ P+A + +F++G + +T
Sbjct: 124 GLENVEYEPEQFPGLLYRLDEPEAVVLLFTSGKLLITGV 162
>gi|82596850|ref|XP_726432.1| transcription initiation factor TFIId [Plasmodium yoelii yoelii
17XNL]
gi|23481840|gb|EAA17997.1| transcription initiation factor tfiid [Plasmodium yoelii yoelii]
Length = 285
Score = 69.3 bits (168), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 46/188 (24%), Positives = 95/188 (50%), Gaps = 17/188 (9%)
Query: 22 QTVVPIQNHAPPQPPAHDPEVDII-------INNVVCSFSVRCHLNLRQIALNGVNVEYR 74
+ + IQN+ + + + +I I+N++ S ++ ++LR +A++ + EY
Sbjct: 78 EIIEDIQNYENDDNKSSNIKNKLIHKDIPLKIHNIISSANLDTEIDLRLVAISIKSAEYN 137
Query: 75 --RENGMVTMKLRKPYTTASIWSSGKITCTGATSEDQSKIAARRYARCLQRL-GFKARFT 131
+ N ++ +++ P TA I+ SG+I TG ++ S ++ + ++ + R
Sbjct: 138 PSKINTLI-IRINNPKCTALIFKSGRIMLTGTKNKTDSIKGCKKIGKIIKLVTNQNIRLK 196
Query: 132 NFRVVNVLGTCSMPFAIRILQFSEKHRA-AEYEPELHPGVTYRITRPKATLK----IFST 186
NF++ N++ + + +R+ + H+ YEPEL G+ YR +P + LK IF +
Sbjct: 197 NFKIENIIASANCNIPVRLEMLAHDHKEYCNYEPELFAGLVYR-YKPTSNLKSVILIFVS 255
Query: 187 GGITVTAC 194
G I +T C
Sbjct: 256 GKIIITGC 263
>gi|295862119|gb|ADG54784.1| CG18009 [Drosophila yakuba]
Length = 240
Score = 69.3 bits (168), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/68 (48%), Positives = 46/68 (67%), Gaps = 1/68 (1%)
Query: 8 TTHSSHSEQEPPPTQTVVPIQNHAPPQPPAHD-PEVDIIINNVVCSFSVRCHLNLRQIAL 66
+++++ S ++ P +P+ N A + D PE+DI+INNVVCSFSV CHL LR IAL
Sbjct: 173 SSNNAKSIEDQQPENQPLPVVNAANDGNASDDEPELDIVINNVVCSFSVGCHLKLRDIAL 232
Query: 67 NGVNVEYR 74
G NVE+R
Sbjct: 233 QGSNVEFR 240
>gi|448371909|ref|ZP_21557028.1| transcription factor [Natrialba aegyptia DSM 13077]
gi|445647000|gb|ELY99980.1| transcription factor [Natrialba aegyptia DSM 13077]
Length = 186
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 48/168 (28%), Positives = 77/168 (45%), Gaps = 8/168 (4%)
Query: 39 DPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYRREN--GMVTMKLRKPYTTASIWSS 96
+P I I NVV S + LNL Q+ + +Y E+ G+V + ++P A I+ S
Sbjct: 3 EPTETIKIENVVASTGIDQELNLEQVGDDLPEADYNPEHFPGLV-YRTQEPKAAALIFRS 61
Query: 97 GKITCTGATSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFA----IRILQ 152
GKI CTGA+SE + + L+ LG + V ++ S+ F + +
Sbjct: 62 GKIVCTGASSEPAVRESLSTVFEVLRDLGIDISESPTIEVQII-VASVDFGSQFNLNAIA 120
Query: 153 FSEKHRAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
EYEPE PG+ YR+ P A +F +G +T ++ +
Sbjct: 121 IGLGLEDVEYEPEQFPGLVYRLDDPSAVALLFGSGKAIITGAKTTDAV 168
>gi|390961570|ref|YP_006425404.1| TATA-box binding protein [Thermococcus sp. CL1]
gi|390519878|gb|AFL95610.1| TATA-box binding protein [Thermococcus sp. CL1]
Length = 187
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 48/157 (30%), Positives = 79/157 (50%), Gaps = 8/157 (5%)
Query: 42 VDIIINNVVCSFSVRCHLNLRQIALNGVNVEYRREN--GMVTMKLRKPYTTASIWSSGKI 99
V + I N+V S + LNL ++ N +Y E G++ + +P I+SSGK+
Sbjct: 4 VKLRIENIVASVDLFTQLNLEKVIEICPNSKYNPEEFPGIIC-RFEEPKVALLIFSSGKL 62
Query: 100 TCTGATSEDQSKIAARRYARCLQRLGFK-ARFTNFRVVNVL--GTCSMPFAIRILQFSEK 156
TGA S + + A + + L+++G K R + N++ G M F + + S
Sbjct: 63 VVTGAKSVEDIERAVNKLIQMLKKIGAKFGRAPQIDIQNMVFSGDIGMEFNLDAVALSLP 122
Query: 157 HRAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTA 193
+ EYEPE PGV YR+ P+A + +FS+G I +
Sbjct: 123 N--CEYEPEQFPGVIYRVKEPRAVILLFSSGKIVCSG 157
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 48/88 (54%), Gaps = 3/88 (3%)
Query: 40 PEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYRRENG-MVTMKLRKPYTTASIWSSGK 98
P++DI N+V S + NL +AL+ N EY E V ++++P ++SSGK
Sbjct: 95 PQIDI--QNMVFSGDIGMEFNLDAVALSLPNCEYEPEQFPGVIYRVKEPRAVILLFSSGK 152
Query: 99 ITCTGATSEDQSKIAARRYARCLQRLGF 126
I C+GA SE + A R+ R L++ G
Sbjct: 153 IVCSGAKSEHDAWEAVRKLLRELEKYGL 180
Score = 38.5 bits (88), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 32/70 (45%)
Query: 131 TNFRVVNVLGTCSMPFAIRILQFSEKHRAAEYEPELHPGVTYRITRPKATLKIFSTGGIT 190
R+ N++ + + + + + E ++Y PE PG+ R PK L IFS+G +
Sbjct: 4 VKLRIENIVASVDLFTQLNLEKVIEICPNSKYNPEEFPGIICRFEEPKVALLIFSSGKLV 63
Query: 191 VTACNDSNKI 200
VT I
Sbjct: 64 VTGAKSVEDI 73
>gi|448593777|ref|ZP_21652677.1| transcription factor [Haloferax elongans ATCC BAA-1513]
gi|445728641|gb|ELZ80242.1| transcription factor [Haloferax elongans ATCC BAA-1513]
Length = 188
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 49/167 (29%), Positives = 80/167 (47%), Gaps = 13/167 (7%)
Query: 37 AHDPEVDII-INNVVCSFSVRCHLNLRQIALNGVNVEYRREN--GMVTMKLRKPYTTASI 93
+H+ +D + I NVV S +V L+L ++ + E+ +N G+V + + P I
Sbjct: 2 SHEARLDSLEIQNVVASSAVGQELDLESLSDDVAGAEFNPDNFPGLV-YRTQDPRAANLI 60
Query: 94 WSSGKITCTGATSEDQSKIAARRYARCLQRLGFKARFTNFR----VVNVLGTCSMPFAIR 149
+ SGKI CTGA+S D+ R + + LG T+ R V N++ + + +
Sbjct: 61 FRSGKIVCTGASSVDEVN---RALEQVFEELGSLGIPTDGREEATVQNIVSSADLGTTLN 117
Query: 150 I--LQFSEKHRAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTAC 194
+ L EYEPE PG+ YRI P + +F +G I +T
Sbjct: 118 LNALAIGLGLEHVEYEPEQFPGLVYRIDDPNVVVLLFGSGKIVITGA 164
Score = 43.1 bits (100), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 38/74 (51%)
Query: 127 KARFTNFRVVNVLGTCSMPFAIRILQFSEKHRAAEYEPELHPGVTYRITRPKATLKIFST 186
+AR + + NV+ + ++ + + S+ AE+ P+ PG+ YR P+A IF +
Sbjct: 4 EARLDSLEIQNVVASSAVGQELDLESLSDDVAGAEFNPDNFPGLVYRTQDPRAANLIFRS 63
Query: 187 GGITVTACNDSNKI 200
G I T + +++
Sbjct: 64 GKIVCTGASSVDEV 77
>gi|448457842|ref|ZP_21595847.1| transcription factor [Halorubrum lipolyticum DSM 21995]
gi|445810143|gb|EMA60174.1| transcription factor [Halorubrum lipolyticum DSM 21995]
Length = 185
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 47/161 (29%), Positives = 76/161 (47%), Gaps = 9/161 (5%)
Query: 39 DPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYRREN--GMVTMKLRKPYTTASIWSS 96
DP+ I I NVV S + L+L+ +A++ +Y E G+V + P + A I+ S
Sbjct: 3 DPKETITIENVVASTGIGQELDLQSVAMDLEGADYDPEQFPGLV-YRTTDPKSAALIFRS 61
Query: 97 GKITCTGATSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRI----LQ 152
GKI CTGA S + + L++L V N++ + + ++ + +
Sbjct: 62 GKIVCTGANSIEAVHESLDLVFDELRKLQIPIEDPEITVQNIVTSADLGESLNLNAIAIG 121
Query: 153 FSEKHRAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTA 193
+H EYEPE PG+ YRI P +F +G + VT
Sbjct: 122 LGLEH--IEYEPEQFPGLVYRIDEPDVVALLFGSGKLVVTG 160
Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 49/99 (49%), Gaps = 7/99 (7%)
Query: 34 QPPAHDPEVDIIINNVVCSFSVRCHLNLRQIALN-GVN-VEYRREN--GMVTMKLRKPYT 89
Q P DPE I + N+V S + LNL IA+ G+ +EY E G+V ++ +P
Sbjct: 90 QIPIEDPE--ITVQNIVTSADLGESLNLNAIAIGLGLEHIEYEPEQFPGLV-YRIDEPDV 146
Query: 90 TASIWSSGKITCTGATSEDQSKIAARRYARCLQRLGFKA 128
A ++ SGK+ TG TS D + A L LG A
Sbjct: 147 VALLFGSGKLVVTGGTSPDDAAAAVDVIVEELDGLGLLA 185
Score = 42.0 bits (97), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 30/59 (50%)
Query: 137 NVLGTCSMPFAIRILQFSEKHRAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTACN 195
NV+ + + + + + A+Y+PE PG+ YR T PK+ IF +G I T N
Sbjct: 12 NVVASTGIGQELDLQSVAMDLEGADYDPEQFPGLVYRTTDPKSAALIFRSGKIVCTGAN 70
>gi|305663395|ref|YP_003859683.1| TATA binding protein of transcription factor TFIID [Ignisphaera
aggregans DSM 17230]
gi|304377964|gb|ADM27803.1| TATA binding protein of transcription factor TFIID [Ignisphaera
aggregans DSM 17230]
Length = 218
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 47/167 (28%), Positives = 82/167 (49%), Gaps = 8/167 (4%)
Query: 39 DPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYRREN--GMVTMKLRKPYTTASIWSS 96
+P + + I N+V + SV ++L + NVEY + G+V +L P TA I+ S
Sbjct: 5 NPNISVKIENIVATVSVDQTIDLDYLDKVLPNVEYDPDQFPGLV-FRLESPKVTALIFRS 63
Query: 97 GKITCTGATSEDQSKIAARRYARCLQRLGFKARFTN---FRVVNVLGTCSMPFAIRILQF 153
G++ TGA S A +R R L L + T+ ++ N++ + ++ I + +
Sbjct: 64 GRMVVTGAKSTADLIKAVKRIVRTL--LKYDIPITSKPRIQIQNIVASANLGSEIMLEKV 121
Query: 154 SEKHRAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
+ YEPE PG+ YR+T P L +FS+G + +T ++
Sbjct: 122 AFLLENTMYEPEQFPGLIYRMTDPHVVLLVFSSGKMVITGAKSEEEV 168
Score = 40.4 bits (93), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 43/84 (51%), Gaps = 3/84 (3%)
Query: 44 IIINNVVCSFSVRCHLNLRQIALNGVNVEYRREN--GMVTMKLRKPYTTASIWSSGKITC 101
I I N+V S ++ + L ++A N Y E G++ ++ P+ ++SSGK+
Sbjct: 101 IQIQNIVASANLGSEIMLEKVAFLLENTMYEPEQFPGLI-YRMTDPHVVLLVFSSGKMVI 159
Query: 102 TGATSEDQSKIAARRYARCLQRLG 125
TGA SE++ A R L+ LG
Sbjct: 160 TGAKSEEEVFQAVRNLYLKLKELG 183
>gi|307352931|ref|YP_003893982.1| TATA-box binding family protein [Methanoplanus petrolearius DSM
11571]
gi|307156164|gb|ADN35544.1| TATA-box binding family protein [Methanoplanus petrolearius DSM
11571]
Length = 186
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 80/167 (47%), Gaps = 20/167 (11%)
Query: 39 DPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYRREN--GMVTMKLRKPYTTASIWSS 96
+PE + I N+V S V L+L+ I + EY ++ G+V +++++P A ++ S
Sbjct: 4 NPEDSLKIENIVASAKVAKELDLQMINEKIKDAEYNKKRFPGVV-LRMQEPKIAALVFGS 62
Query: 97 GKITCTGATSEDQSKIAARRYARCLQRLGFKARFTN--------FRVVNVLGTCSM--PF 146
GK+ TGA S D ++ L LG K R ++V N++ + + P
Sbjct: 63 GKVVLTGAKSIDS-------LSKGLDILGDKLRELKLDIPKNLEYKVQNIVTSADLGTPI 115
Query: 147 AIRILQFSEKHRAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTA 193
+ + EYEPE PG+ YR+ PK + +F +G + +T
Sbjct: 116 NLNKIAVGFNLERIEYEPEQFPGLVYRLDEPKVVVLLFGSGKLIITG 162
Score = 38.5 bits (88), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 15/63 (23%), Positives = 32/63 (50%)
Query: 132 NFRVVNVLGTCSMPFAIRILQFSEKHRAAEYEPELHPGVTYRITRPKATLKIFSTGGITV 191
+ ++ N++ + + + + +EK + AEY + PGV R+ PK +F +G + +
Sbjct: 8 SLKIENIVASAKVAKELDLQMINEKIKDAEYNKKRFPGVVLRMQEPKIAALVFGSGKVVL 67
Query: 192 TAC 194
T
Sbjct: 68 TGA 70
>gi|154150459|ref|YP_001404077.1| transcription factor [Methanoregula boonei 6A8]
gi|153999011|gb|ABS55434.1| TATA-box binding [Methanoregula boonei 6A8]
Length = 186
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 49/181 (27%), Positives = 89/181 (49%), Gaps = 23/181 (12%)
Query: 39 DPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYRREN--GMVTMKLRKPYTTASIWSS 96
+PE + I N+V S V +L+L +A + EY ++ G+V ++++ P A ++ S
Sbjct: 4 NPEDSLKIENIVASAKVTDYLDLPALASKIKDAEYNKKRFPGVV-LRMQDPKIAALVFGS 62
Query: 97 GKITCTGATSEDQSKIAARRYARCLQRLGFKARFTN--------FRVVNVLGTCSMPFAI 148
GK+ TGA S D ++ L LG + R + +++ N++ + + AI
Sbjct: 63 GKVVLTGAKSVDS-------LSKGLTILGNQLRSLDIDIPKKLTYKIQNIVTSADLATAI 115
Query: 149 RILQFSEKHRA--AEYEPELHPGVTYRITRPKATLKIFSTGGITVTACN---DSNKIPVQ 203
+ + + EYEPE PG+ YR+ PK + +F +G + +T D+ K V+
Sbjct: 116 NLNKIAVGFNLDRIEYEPEQFPGLVYRLENPKVVVLLFGSGKLIITGGKEPEDAKKAVVK 175
Query: 204 I 204
I
Sbjct: 176 I 176
>gi|449545513|gb|EMD36484.1| hypothetical protein CERSUDRAFT_95784 [Ceriporiopsis subvermispora
B]
Length = 154
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 55/100 (55%), Gaps = 15/100 (15%)
Query: 93 IWSSGKITCTGATSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQ 152
I+ SGK+ TGA SED + +A+R+ AR +Q+L F F+ ++ N +G+
Sbjct: 12 IFVSGKLVVTGAKSEDNTCLASRKSARIVQKLEFDPNFSELKIQNTMGSRDF-------- 63
Query: 153 FSEKHRAAEYEPELHPGVTYRITRPKATLKIFSTGGITVT 192
+ +EPEL PG+TY + +PK L IF + + +T
Sbjct: 64 -------SSFEPELFPGLTYSMIKPKVVLLIFMSRMVVLT 96
>gi|295862199|gb|ADG54824.1| CG18009 [Drosophila teissieri]
Length = 240
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/71 (49%), Positives = 45/71 (63%), Gaps = 2/71 (2%)
Query: 5 GMTTTHSSHSEQEPPPTQTVVPIQNHAPPQPPAHD-PEVDIIINNVVCSFSVRCHLNLRQ 63
G ++ ++ S + P Q + + N A + D PE+DI+INNVVCSFSV CHL LR
Sbjct: 171 GESSNNAKSSGDQQPENQPMT-LNNTANEGNASDDEPELDIVINNVVCSFSVGCHLKLRD 229
Query: 64 IALNGVNVEYR 74
IAL G NVEYR
Sbjct: 230 IALQGSNVEYR 240
>gi|73668595|ref|YP_304610.1| transcription factor [Methanosarcina barkeri str. Fusaro]
gi|72395757|gb|AAZ70030.1| TATA binding protein of transcription factor TFIID [Methanosarcina
barkeri str. Fusaro]
Length = 184
Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 44/159 (27%), Positives = 78/159 (49%), Gaps = 7/159 (4%)
Query: 41 EVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYRREN--GMVTMKLRKPYTTASIWSSGK 98
E I + NVV S ++ +L++I EY + G+V + P I++SGK
Sbjct: 2 EYTITVENVVASTTLAEDFDLQKIEARLEKAEYNKAKFPGLV-YRTENPKAAFLIFTSGK 60
Query: 99 ITCTGATSEDQSKIAARRYARCLQRLGFKAR--FTNFRVVNVLGTCSMP--FAIRILQFS 154
+ CTGA + D +K+A A L+ +G + + + N++ T + + + +
Sbjct: 61 VVCTGAKTVDNAKMAIINLASTLKSIGCEKINPEPDVHIQNIVATADLETNLNLNTIVIA 120
Query: 155 EKHRAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTA 193
EYEPE+ PG+ YR+ P+ + IFS+G + +T
Sbjct: 121 FGMENVEYEPEVFPGLVYRLEDPRVVVLIFSSGKLVITG 159
Score = 44.3 bits (103), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 44/92 (47%), Gaps = 5/92 (5%)
Query: 39 DPEVDIIINNVVCSFSVRCHLNLRQ--IALNGVNVEYRREN--GMVTMKLRKPYTTASIW 94
+PE D+ I N+V + + +LNL IA NVEY E G+V +L P I+
Sbjct: 92 NPEPDVHIQNIVATADLETNLNLNTIVIAFGMENVEYEPEVFPGLV-YRLEDPRVVVLIF 150
Query: 95 SSGKITCTGATSEDQSKIAARRYARCLQRLGF 126
SSGK+ TG S + + R + LG
Sbjct: 151 SSGKLVITGGKSPEDCEEGLRVIKKEFDNLGL 182
>gi|336477906|ref|YP_004617047.1| TATA-box binding family protein [Methanosalsum zhilinae DSM 4017]
gi|335931287|gb|AEH61828.1| TATA-box binding family protein [Methanosalsum zhilinae DSM 4017]
Length = 183
Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 44/156 (28%), Positives = 75/156 (48%), Gaps = 6/156 (3%)
Query: 43 DIIINNVVCSFSVRCHLNLRQIALNGVNVEYRREN--GMVTMKLRKPYTTASIWSSGKIT 100
+I I NVV S + +L +I + EY ++ G+V ++ P +++SGK+
Sbjct: 5 NIKIENVVASTKLAESFDLTKIEMEFEGAEYNKQKFPGLV-YRVSDPKAAFLVFTSGKVV 63
Query: 101 CTGATSEDQSKIAARRYARCLQRLGFK-ARFTNFRVVNVLGTCSMPFAIRI--LQFSEKH 157
CTGA + + + AR L +G + + V N++ + + + + +
Sbjct: 64 CTGAKNVEDVHTVIKNMARKLNSIGVETVEDPDITVQNIVASADLHAILNLNAIAIGLGL 123
Query: 158 RAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTA 193
EYEPE PG+ YRI PK + IFS+G + VT
Sbjct: 124 ENIEYEPEQFPGLVYRIDEPKVVVLIFSSGKLVVTG 159
Score = 43.5 bits (101), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 47/93 (50%), Gaps = 7/93 (7%)
Query: 38 HDPEVDIIINNVVCSFSVRCHLNLRQIALN-GV-NVEYRREN--GMVTMKLRKPYTTASI 93
DP DI + N+V S + LNL IA+ G+ N+EY E G+V ++ +P I
Sbjct: 93 EDP--DITVQNIVASADLHAILNLNAIAIGLGLENIEYEPEQFPGLV-YRIDEPKVVVLI 149
Query: 94 WSSGKITCTGATSEDQSKIAARRYARCLQRLGF 126
+SSGK+ TG S + ++ + L +G
Sbjct: 150 FSSGKLVVTGGKSPEDCEMGVEVVRQQLDSMGL 182
Score = 43.1 bits (100), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 16/69 (23%), Positives = 35/69 (50%)
Query: 132 NFRVVNVLGTCSMPFAIRILQFSEKHRAAEYEPELHPGVTYRITRPKATLKIFSTGGITV 191
N ++ NV+ + + + + + + AEY + PG+ YR++ PKA +F++G +
Sbjct: 5 NIKIENVVASTKLAESFDLTKIEMEFEGAEYNKQKFPGLVYRVSDPKAAFLVFTSGKVVC 64
Query: 192 TACNDSNKI 200
T + +
Sbjct: 65 TGAKNVEDV 73
>gi|393796304|ref|ZP_10379668.1| TATA-box binding protein (TBP), component of TFIID and TFIIIB
[Candidatus Nitrosoarchaeum limnia BG20]
Length = 186
Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 45/150 (30%), Positives = 78/150 (52%), Gaps = 4/150 (2%)
Query: 44 IIINNVVCSFSVRCHLNLRQIALNGVNVEYRREN--GMVTMKLRKPYTTASIWSSGKITC 101
I I NVV S ++ L+L I +VEY E G V +L+ P T ++SSGK+ C
Sbjct: 8 ISIVNVVASATIDQKLDLVDITKKFPDVEYHPEQFPGAV-FRLKNPKTATLLFSSGKMVC 66
Query: 102 TGATSEDQSKIAARRYARCLQRLGFKAR-FTNFRVVNVLGTCSMPFAIRILQFSEKHRAA 160
TGA S++ ++ A + L++ K + + N++ + ++ + + Q + +
Sbjct: 67 TGAKSQELAETAVAKVVSMLKKGKIKIKNEAEVTIQNIVSSINLGGRVNLEQAARTLPRS 126
Query: 161 EYEPELHPGVTYRITRPKATLKIFSTGGIT 190
YEPE PG+ +R+ PK + IFS+G +
Sbjct: 127 MYEPEQFPGLIHRMLDPKTVILIFSSGKLV 156
Score = 41.6 bits (96), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 32/60 (53%)
Query: 135 VVNVLGTCSMPFAIRILQFSEKHRAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTAC 194
+VNV+ + ++ + ++ ++K EY PE PG +R+ PK +FS+G + T
Sbjct: 10 IVNVVASATIDQKLDLVDITKKFPDVEYHPEQFPGAVFRLKNPKTATLLFSSGKMVCTGA 69
Score = 36.6 bits (83), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 35/69 (50%), Gaps = 3/69 (4%)
Query: 41 EVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYRREN--GMVTMKLRKPYTTASIWSSGK 98
E ++ I N+V S ++ +NL Q A Y E G++ ++ P T I+SSGK
Sbjct: 96 EAEVTIQNIVSSINLGGRVNLEQAARTLPRSMYEPEQFPGLIH-RMLDPKTVILIFSSGK 154
Query: 99 ITCTGATSE 107
+ C GA E
Sbjct: 155 LVCVGAKLE 163
>gi|448301779|ref|ZP_21491769.1| transcription factor [Natronorubrum tibetense GA33]
gi|445583403|gb|ELY37734.1| transcription factor [Natronorubrum tibetense GA33]
Length = 186
Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 47/160 (29%), Positives = 75/160 (46%), Gaps = 6/160 (3%)
Query: 39 DPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYRREN--GMVTMKLRKPYTTASIWSS 96
DP+ I I NVV S + L+L+ +A++ +Y EN G+V + + P + A I+ S
Sbjct: 3 DPKDSISIENVVASTGIGQELDLQSVAMDLEGADYDPENFPGLV-YRTQNPKSAALIFRS 61
Query: 97 GKITCTGATSEDQSKIAARRYARCLQRLGFKARFT-NFRVVNVLGTCSMP--FAIRILQF 153
GKI CTGA S + + L+ L + V N++ + + + +
Sbjct: 62 GKIVCTGANSTEAVHGSLNVVFDKLRELQIQVEEDPEIIVQNIVSSADLGRNLNLNAIAI 121
Query: 154 SEKHRAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTA 193
EYEPE PG+ YRI P+ +F +G + VT
Sbjct: 122 GLGLENIEYEPEQFPGLVYRIDEPEVVALLFGSGKLVVTG 161
Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 50/93 (53%), Gaps = 7/93 (7%)
Query: 38 HDPEVDIIINNVVCSFSVRCHLNLRQIALN-GV-NVEYRREN--GMVTMKLRKPYTTASI 93
DPE II+ N+V S + +LNL IA+ G+ N+EY E G+V ++ +P A +
Sbjct: 95 EDPE--IIVQNIVSSADLGRNLNLNAIAIGLGLENIEYEPEQFPGLV-YRIDEPEVVALL 151
Query: 94 WSSGKITCTGATSEDQSKIAARRYARCLQRLGF 126
+ SGK+ TG + +K A + L+ LG
Sbjct: 152 FGSGKLVVTGGKQIEDAKQAVDVIVKRLEDLGL 184
Score = 40.0 bits (92), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 31/64 (48%)
Query: 137 NVLGTCSMPFAIRILQFSEKHRAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTACND 196
NV+ + + + + + A+Y+PE PG+ YR PK+ IF +G I T N
Sbjct: 12 NVVASTGIGQELDLQSVAMDLEGADYDPENFPGLVYRTQNPKSAALIFRSGKIVCTGANS 71
Query: 197 SNKI 200
+ +
Sbjct: 72 TEAV 75
>gi|300709793|ref|YP_003735607.1| TATA-box binding family protein [Halalkalicoccus jeotgali B3]
gi|448297437|ref|ZP_21487483.1| transcription factor [Halalkalicoccus jeotgali B3]
gi|299123476|gb|ADJ13815.1| TATA-box binding family protein [Halalkalicoccus jeotgali B3]
gi|445579746|gb|ELY34139.1| transcription factor [Halalkalicoccus jeotgali B3]
Length = 185
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 46/160 (28%), Positives = 76/160 (47%), Gaps = 6/160 (3%)
Query: 39 DPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYRREN--GMVTMKLRKPYTTASIWSS 96
DP+ I I NVV S + L+L+ +A++ +Y E G+V + + P + A I+ S
Sbjct: 2 DPKETINIENVVASTGIGQELDLQSVAMDLEGADYDPEQFPGLV-YRTQNPKSAALIFRS 60
Query: 97 GKITCTGATSEDQSKIAARRYARCLQRLGFKARFT-NFRVVNVLGTCSMP--FAIRILQF 153
GKI CTGA S D + + L+ L + + V N++ + + + +
Sbjct: 61 GKIVCTGAKSTDDVHESLQIVFDKLRDLEIQVQDDPEIVVQNIVTSADLGRNLNLNAIAI 120
Query: 154 SEKHRAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTA 193
EYEPE PG+ YR+ PK +F +G + +T
Sbjct: 121 GLGLENIEYEPEQFPGLVYRLDEPKVVALLFGSGKLVITG 160
Score = 44.3 bits (103), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 49/93 (52%), Gaps = 7/93 (7%)
Query: 38 HDPEVDIIINNVVCSFSVRCHLNLRQIALN-GV-NVEYRREN--GMVTMKLRKPYTTASI 93
DPE I++ N+V S + +LNL IA+ G+ N+EY E G+V +L +P A +
Sbjct: 94 DDPE--IVVQNIVTSADLGRNLNLNAIAIGLGLENIEYEPEQFPGLV-YRLDEPKVVALL 150
Query: 94 WSSGKITCTGATSEDQSKIAARRYARCLQRLGF 126
+ SGK+ TG ++ A + L+ LG
Sbjct: 151 FGSGKLVITGGKQPVDAEHAVDKIVSRLEDLGL 183
Score = 39.7 bits (91), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 31/64 (48%)
Query: 137 NVLGTCSMPFAIRILQFSEKHRAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTACND 196
NV+ + + + + + A+Y+PE PG+ YR PK+ IF +G I T
Sbjct: 11 NVVASTGIGQELDLQSVAMDLEGADYDPEQFPGLVYRTQNPKSAALIFRSGKIVCTGAKS 70
Query: 197 SNKI 200
++ +
Sbjct: 71 TDDV 74
>gi|435849404|ref|YP_007311592.1| TATA-box binding protein (TBP), component of TFIID and TFIIIB
[Natronococcus occultus SP4]
gi|433675612|gb|AGB39802.1| TATA-box binding protein (TBP), component of TFIID and TFIIIB
[Natronococcus occultus SP4]
Length = 186
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 47/166 (28%), Positives = 75/166 (45%), Gaps = 6/166 (3%)
Query: 39 DPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYRREN--GMVTMKLRKPYTTASIWSS 96
DP+ I I NVV S + L L +A++ +Y E G+V + P A I+ S
Sbjct: 3 DPQDSITIENVVASSGIGQELALESLAMDLPGADYDPEQFPGLV-YRTTDPKAAALIFRS 61
Query: 97 GKITCTGATSEDQSKIAARRYARCLQRLGFKARFT-NFRVVNVLGTCSMPFAIRI--LQF 153
GKI CTGA S D + + L+ L + V N++ + + ++ + +
Sbjct: 62 GKIVCTGAKSIDGVQESMEIVFEKLRDLQIEVEEDPEIVVQNIVSSADLGRSLNLNAIAI 121
Query: 154 SEKHRAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTACNDSNK 199
+ EYEPE PG+ YR+ P +F +G + VT D +
Sbjct: 122 GLGLESIEYEPEQFPGLVYRLDEPDVVTLLFGSGKLVVTGGKDVDD 167
Score = 43.5 bits (101), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 47/93 (50%), Gaps = 7/93 (7%)
Query: 38 HDPEVDIIINNVVCSFSVRCHLNLRQIALN-GV-NVEYRREN--GMVTMKLRKPYTTASI 93
DPE I++ N+V S + LNL IA+ G+ ++EY E G+V +L +P +
Sbjct: 95 EDPE--IVVQNIVSSADLGRSLNLNAIAIGLGLESIEYEPEQFPGLV-YRLDEPDVVTLL 151
Query: 94 WSSGKITCTGATSEDQSKIAARRYARCLQRLGF 126
+ SGK+ TG D ++ A L+ LG
Sbjct: 152 FGSGKLVVTGGKDVDDARQAIDVIVERLEDLGL 184
>gi|448406902|ref|ZP_21573334.1| transcription factor [Halosimplex carlsbadense 2-9-1]
gi|445676708|gb|ELZ29225.1| transcription factor [Halosimplex carlsbadense 2-9-1]
Length = 186
Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 46/160 (28%), Positives = 75/160 (46%), Gaps = 6/160 (3%)
Query: 39 DPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYRREN--GMVTMKLRKPYTTASIWSS 96
DP+ I I NVV S + L+L+ +A++ +Y E G+V + ++P + A I+ S
Sbjct: 3 DPKETINIENVVASTGIGQELDLQSVAMDLEGADYDPEQFPGLV-YRTQEPKSAALIFRS 61
Query: 97 GKITCTGATSEDQSKIAARRYARCLQRLGFKARFT-NFRVVNVLGTCSMP--FAIRILQF 153
GKI CTGA S D + R L+ L + V N++ + + + +
Sbjct: 62 GKIVCTGAKSTDDVHESLRIVFDKLRDLNIQVDDDPEIVVQNIVTSADLGRNLNLNAIAI 121
Query: 154 SEKHRAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTA 193
EYEPE PG+ YR+ P +F +G + +T
Sbjct: 122 GLGLENIEYEPEQFPGLVYRLDDPDVVALLFGSGKLVITG 161
Score = 46.6 bits (109), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 49/93 (52%), Gaps = 7/93 (7%)
Query: 38 HDPEVDIIINNVVCSFSVRCHLNLRQIALN-GV-NVEYRREN--GMVTMKLRKPYTTASI 93
DPE I++ N+V S + +LNL IA+ G+ N+EY E G+V +L P A +
Sbjct: 95 DDPE--IVVQNIVTSADLGRNLNLNAIAIGLGLENIEYEPEQFPGLV-YRLDDPDVVALL 151
Query: 94 WSSGKITCTGATSEDQSKIAARRYARCLQRLGF 126
+ SGK+ TG + ++ A + L+ LG
Sbjct: 152 FGSGKLVITGGKQPEDAEEAVDKIVSRLEDLGL 184
Score = 39.7 bits (91), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 31/64 (48%)
Query: 137 NVLGTCSMPFAIRILQFSEKHRAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTACND 196
NV+ + + + + + A+Y+PE PG+ YR PK+ IF +G I T
Sbjct: 12 NVVASTGIGQELDLQSVAMDLEGADYDPEQFPGLVYRTQEPKSAALIFRSGKIVCTGAKS 71
Query: 197 SNKI 200
++ +
Sbjct: 72 TDDV 75
>gi|448335944|ref|ZP_21525067.1| transcription factor [Natrinema pellirubrum DSM 15624]
gi|448404754|ref|ZP_21572552.1| transcription factor [Haloterrigena limicola JCM 13563]
gi|445614729|gb|ELY68395.1| transcription factor [Natrinema pellirubrum DSM 15624]
gi|445663265|gb|ELZ16018.1| transcription factor [Haloterrigena limicola JCM 13563]
Length = 186
Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 48/154 (31%), Positives = 70/154 (45%), Gaps = 6/154 (3%)
Query: 46 INNVVCSFSVRCHLNLRQIA--LNGVNVEYRRENGMVTMKLRKPYTTASIWSSGKITCTG 103
I NVV S V LNL +A L+G + + R G V + + P + A I+ SGKI CTG
Sbjct: 10 IENVVASTGVDRELNLEAVAEDLDGTDYDQERFPGAV-YRTQNPKSAALIFRSGKIVCTG 68
Query: 104 ATSEDQSKIAARRYARCLQRLGFKARFT-NFRVVNVLGTCSMPFAIRI--LQFSEKHRAA 160
A S D + L+ LG + N++ + + A+ + +
Sbjct: 69 AKSTDDVYESLNIVFDELRGLGIDVPSNPEITIQNIVSSGDLGSAVNLNAIAIGFGLENI 128
Query: 161 EYEPELHPGVTYRITRPKATLKIFSTGGITVTAC 194
EYEPE PG+ YR+ P IF +G + VT
Sbjct: 129 EYEPEQFPGLVYRMDDPNVVTLIFGSGKVVVTGA 162
>gi|448610758|ref|ZP_21661425.1| transcription factor [Haloferax mucosum ATCC BAA-1512]
gi|445744442|gb|ELZ95920.1| transcription factor [Haloferax mucosum ATCC BAA-1512]
Length = 188
Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 45/154 (29%), Positives = 71/154 (46%), Gaps = 6/154 (3%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYRREN--GMVTMKLRKPYTTASIWSSGKITCTG 103
+ NVV S V L+L +++L+ + +Y EN G+V + P ++ SGKI CTG
Sbjct: 12 VQNVVASTEVSFELDLDRLSLDMSSTDYDPENFPGLV-YRTHDPKAACLVFRSGKIVCTG 70
Query: 104 ATSEDQSKIAARRYARCLQRLGFKA-RFTNFRVVNVLGTCSMPFAIRI--LQFSEKHRAA 160
A S A L LG + + N++ + + A+ + L A
Sbjct: 71 ADSVTDVNAAIETLFDELDSLGVPVPDDPSPTIQNIVSSADLGGALNLNALAIGLGLEAV 130
Query: 161 EYEPELHPGVTYRITRPKATLKIFSTGGITVTAC 194
EYEPE PG+ YR+ P + +F +G I +T
Sbjct: 131 EYEPEQFPGLVYRLDEPNVVILMFGSGKIVITGA 164
Score = 42.4 bits (98), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 32/62 (51%)
Query: 134 RVVNVLGTCSMPFAIRILQFSEKHRAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTA 193
V NV+ + + F + + + S + +Y+PE PG+ YR PKA +F +G I T
Sbjct: 11 EVQNVVASTEVSFELDLDRLSLDMSSTDYDPENFPGLVYRTHDPKAACLVFRSGKIVCTG 70
Query: 194 CN 195
+
Sbjct: 71 AD 72
>gi|170291079|ref|YP_001737895.1| TATA-box binding family protein [Candidatus Korarchaeum cryptofilum
OPF8]
gi|170175159|gb|ACB08212.1| TATA-box binding family protein [Candidatus Korarchaeum cryptofilum
OPF8]
Length = 211
Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 44/163 (26%), Positives = 77/163 (47%), Gaps = 4/163 (2%)
Query: 41 EVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYRREN--GMVTMKLRKPYTTASIWSSGK 98
E +I I NVV S +R L+L +I+ Y E G+V +K+ +P ++SSGK
Sbjct: 30 EPEIAIQNVVSSADIRQRLDLHEISRRIKKSRYDPEKFPGLV-LKIDEPKAALLLFSSGK 88
Query: 99 ITCTGATSEDQSKIAARRYARCLQRLGFKARFTNF-RVVNVLGTCSMPFAIRILQFSEKH 157
CTG S ++S A LQ+ G + + + N++ + + + I + + +
Sbjct: 89 FVCTGTKSVEESAKAINAAIEVLQKHGIEVKGRPLIKAENIVASAKLHVKVDIERLALEL 148
Query: 158 RAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
YEPE PG+ +R+ P IF++G + T + +
Sbjct: 149 ENTLYEPEQFPGLIFRMKDPDVVFLIFASGSLVCTGAKKESDV 191
Score = 40.4 bits (93), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 37/73 (50%)
Query: 121 LQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKHRAAEYEPELHPGVTYRITRPKAT 180
+QR+ R + NV+ + + + + + S + + + Y+PE PG+ +I PKA
Sbjct: 21 IQRILKNIREPEIAIQNVVSSADIRQRLDLHEISRRIKKSRYDPEKFPGLVLKIDEPKAA 80
Query: 181 LKIFSTGGITVTA 193
L +FS+G T
Sbjct: 81 LLLFSSGKFVCTG 93
Score = 39.7 bits (91), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 40/82 (48%), Gaps = 3/82 (3%)
Query: 47 NNVVCSFSVRCHLNLRQIALNGVNVEYRREN--GMVTMKLRKPYTTASIWSSGKITCTGA 104
N+V S + +++ ++AL N Y E G++ +++ P I++SG + CTGA
Sbjct: 127 ENIVASAKLHVKVDIERLALELENTLYEPEQFPGLI-FRMKDPDVVFLIFASGSLVCTGA 185
Query: 105 TSEDQSKIAARRYARCLQRLGF 126
E + A + L R G+
Sbjct: 186 KKESDVRRAVYKLRDILARKGY 207
>gi|385805423|ref|YP_005841821.1| TATA-box-binding protein (TATA-box factor) [Fervidicoccus fontis
Kam940]
gi|383795286|gb|AFH42369.1| TATA-box-binding protein (TATA-box factor) [Fervidicoccus fontis
Kam940]
Length = 206
Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/158 (27%), Positives = 77/158 (48%), Gaps = 4/158 (2%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYRREN--GMVTMKLRKPYTTASIWSSGKITCTG 103
I N+V + ++ L+L +I VEY + G+V +L +P TA I+ SGK+ TG
Sbjct: 20 IENIVATVTLDQQLDLHEIERKVPRVEYNPDQFPGLV-FRLDRPKITALIFKSGKMVVTG 78
Query: 104 ATSEDQSKIAARRYARCLQRLGFKARFT-NFRVVNVLGTCSMPFAIRILQFSEKHRAAEY 162
+ S + A +R + G K ++ N++ + ++ + + + K Y
Sbjct: 79 SKSTQELITAVKRIIKTFYNHGIKITGRPKIQIQNIVASANLNVDVNLEDAAYKLENNMY 138
Query: 163 EPELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
EPE PG+ +R+T P L IFS+G + +T ++
Sbjct: 139 EPEQFPGLIHRMTDPYVVLLIFSSGKMVITGAKREEEV 176
Score = 43.1 bits (100), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 36/67 (53%)
Query: 134 RVVNVLGTCSMPFAIRILQFSEKHRAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTA 193
++ N++ T ++ + + + K EY P+ PG+ +R+ RPK T IF +G + VT
Sbjct: 19 QIENIVATVTLDQQLDLHEIERKVPRVEYNPDQFPGLVFRLDRPKITALIFKSGKMVVTG 78
Query: 194 CNDSNKI 200
+ ++
Sbjct: 79 SKSTQEL 85
Score = 40.4 bits (93), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 40/89 (44%), Gaps = 15/89 (16%)
Query: 44 IIINNVVCSFSVRCHLNLRQIALNGVNVEYRRENGM--------VTMKLRKPYTTASIWS 95
I I N+V S ++ +NL A Y+ EN M + ++ PY I+S
Sbjct: 109 IQIQNIVASANLNVDVNLEDAA-------YKLENNMYEPEQFPGLIHRMTDPYVVLLIFS 161
Query: 96 SGKITCTGATSEDQSKIAARRYARCLQRL 124
SGK+ TGA E++ A + L+ L
Sbjct: 162 SGKMVITGAKREEEVSKAVENIYKTLKEL 190
>gi|433593455|ref|YP_007296196.1| TATA-box binding protein (TBP), component of TFIID and TFIIIB
[Natrinema pellirubrum DSM 15624]
gi|433307965|gb|AGB33776.1| TATA-box binding protein (TBP), component of TFIID and TFIIIB
[Natrinema pellirubrum DSM 15624]
Length = 193
Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 48/154 (31%), Positives = 70/154 (45%), Gaps = 6/154 (3%)
Query: 46 INNVVCSFSVRCHLNLRQIA--LNGVNVEYRRENGMVTMKLRKPYTTASIWSSGKITCTG 103
I NVV S V LNL +A L+G + + R G V + + P + A I+ SGKI CTG
Sbjct: 17 IENVVASTGVDRELNLEAVAEDLDGTDYDQERFPGAV-YRTQNPKSAALIFRSGKIVCTG 75
Query: 104 ATSEDQSKIAARRYARCLQRLGFKARFT-NFRVVNVLGTCSMPFAIRI--LQFSEKHRAA 160
A S D + L+ LG + N++ + + A+ + +
Sbjct: 76 AKSTDDVYESLNIVFDELRGLGIDVPSNPEITIQNIVSSGDLGSAVNLNAIAIGFGLENI 135
Query: 161 EYEPELHPGVTYRITRPKATLKIFSTGGITVTAC 194
EYEPE PG+ YR+ P IF +G + VT
Sbjct: 136 EYEPEQFPGLVYRMDDPNVVTLIFGSGKVVVTGA 169
>gi|295862121|gb|ADG54785.1| CG18009 [Drosophila yakuba]
Length = 239
Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/68 (48%), Positives = 45/68 (66%), Gaps = 1/68 (1%)
Query: 8 TTHSSHSEQEPPPTQTVVPIQNHAPPQPPAHD-PEVDIIINNVVCSFSVRCHLNLRQIAL 66
+++++ S + P +P+ N A + D PE+DI+INNVVCSFSV CHL LR IAL
Sbjct: 172 SSNNAKSIGDQQPENQPLPVVNAANDGNASDDEPELDIVINNVVCSFSVGCHLKLRDIAL 231
Query: 67 NGVNVEYR 74
G NVE+R
Sbjct: 232 QGSNVEFR 239
>gi|295862107|gb|ADG54778.1| CG18009 [Drosophila yakuba]
Length = 238
Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/68 (48%), Positives = 45/68 (66%), Gaps = 1/68 (1%)
Query: 8 TTHSSHSEQEPPPTQTVVPIQNHAPPQPPAHD-PEVDIIINNVVCSFSVRCHLNLRQIAL 66
+++++ S + P +P+ N A + D PE+DI+INNVVCSFSV CHL LR IAL
Sbjct: 171 SSNNAKSIGDQQPENQPLPVVNAANDGNASDDEPELDIVINNVVCSFSVGCHLKLRDIAL 230
Query: 67 NGVNVEYR 74
G NVE+R
Sbjct: 231 QGSNVEFR 238
>gi|295862101|gb|ADG54775.1| CG18009 [Drosophila yakuba]
Length = 240
Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/68 (48%), Positives = 45/68 (66%), Gaps = 1/68 (1%)
Query: 8 TTHSSHSEQEPPPTQTVVPIQNHAPPQPPAHD-PEVDIIINNVVCSFSVRCHLNLRQIAL 66
+++++ S + P +P+ N A + D PE+DI+INNVVCSFSV CHL LR IAL
Sbjct: 173 SSNNAKSIGDQQPENQPLPVVNAANDGNASDDEPELDIVINNVVCSFSVGCHLKLRDIAL 232
Query: 67 NGVNVEYR 74
G NVE+R
Sbjct: 233 QGSNVEFR 240
>gi|295862091|gb|ADG54770.1| CG18009 [Drosophila yakuba]
gi|295862093|gb|ADG54771.1| CG18009 [Drosophila yakuba]
gi|295862095|gb|ADG54772.1| CG18009 [Drosophila yakuba]
gi|295862097|gb|ADG54773.1| CG18009 [Drosophila yakuba]
gi|295862099|gb|ADG54774.1| CG18009 [Drosophila yakuba]
gi|295862103|gb|ADG54776.1| CG18009 [Drosophila yakuba]
gi|295862109|gb|ADG54779.1| CG18009 [Drosophila yakuba]
gi|295862111|gb|ADG54780.1| CG18009 [Drosophila yakuba]
gi|295862113|gb|ADG54781.1| CG18009 [Drosophila yakuba]
gi|295862115|gb|ADG54782.1| CG18009 [Drosophila yakuba]
gi|295862117|gb|ADG54783.1| CG18009 [Drosophila yakuba]
gi|295862123|gb|ADG54786.1| CG18009 [Drosophila yakuba]
gi|295862125|gb|ADG54787.1| CG18009 [Drosophila yakuba]
gi|295862127|gb|ADG54788.1| CG18009 [Drosophila yakuba]
gi|295862129|gb|ADG54789.1| CG18009 [Drosophila yakuba]
gi|295862131|gb|ADG54790.1| CG18009 [Drosophila yakuba]
gi|295862133|gb|ADG54791.1| CG18009 [Drosophila yakuba]
gi|295862137|gb|ADG54793.1| CG18009 [Drosophila yakuba]
Length = 240
Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/68 (48%), Positives = 45/68 (66%), Gaps = 1/68 (1%)
Query: 8 TTHSSHSEQEPPPTQTVVPIQNHAPPQPPAHD-PEVDIIINNVVCSFSVRCHLNLRQIAL 66
+++++ S + P +P+ N A + D PE+DI+INNVVCSFSV CHL LR IAL
Sbjct: 173 SSNNAKSIGDQQPENQPLPVVNAANDGNASDDEPELDIVINNVVCSFSVGCHLKLRDIAL 232
Query: 67 NGVNVEYR 74
G NVE+R
Sbjct: 233 QGSNVEFR 240
>gi|295862135|gb|ADG54792.1| CG18009 [Drosophila yakuba]
Length = 240
Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/68 (48%), Positives = 45/68 (66%), Gaps = 1/68 (1%)
Query: 8 TTHSSHSEQEPPPTQTVVPIQNHAPPQPPAHD-PEVDIIINNVVCSFSVRCHLNLRQIAL 66
+++++ S + P +P+ N A + D PE+DI+INNVVCSFSV CHL LR IAL
Sbjct: 173 SSNNAKSIGDQQPENQPLPVVNAANDGNASDDEPELDIVINNVVCSFSVGCHLKLRDIAL 232
Query: 67 NGVNVEYR 74
G NVE+R
Sbjct: 233 QGSNVEFR 240
>gi|448322383|ref|ZP_21511854.1| transcription factor [Natronococcus amylolyticus DSM 10524]
gi|445601591|gb|ELY55578.1| transcription factor [Natronococcus amylolyticus DSM 10524]
Length = 186
Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 47/160 (29%), Positives = 76/160 (47%), Gaps = 6/160 (3%)
Query: 39 DPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYRREN--GMVTMKLRKPYTTASIWSS 96
DP+ I I NVV S S+ L+L+ +A++ +Y EN G+V + P + A I+ S
Sbjct: 3 DPQDSIEIENVVASSSIGQELDLQSLAMDLEGADYDPENFPGLV-YRTTDPKSAALIFRS 61
Query: 97 GKITCTGATSEDQSKIAARRYARCLQRLGFKARFT-NFRVVNVLGTCSMP--FAIRILQF 153
GKI CTGA S + + + L+ L + + V N++ + + + +
Sbjct: 62 GKIVCTGAKSIENVHESLKIVFEELRDLQIEVKEGPEIVVQNIVSSADLGRNLNLNAIAI 121
Query: 154 SEKHRAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTA 193
EYEPE PG+ YR+ P +F +G + VT
Sbjct: 122 GLGLENIEYEPEQFPGLVYRLDEPNVVALLFGSGKLVVTG 161
Score = 45.4 bits (106), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 47/88 (53%), Gaps = 5/88 (5%)
Query: 43 DIIINNVVCSFSVRCHLNLRQIALN-GV-NVEYRREN--GMVTMKLRKPYTTASIWSSGK 98
+I++ N+V S + +LNL IA+ G+ N+EY E G+V +L +P A ++ SGK
Sbjct: 98 EIVVQNIVSSADLGRNLNLNAIAIGLGLENIEYEPEQFPGLV-YRLDEPNVVALLFGSGK 156
Query: 99 ITCTGATSEDQSKIAARRYARCLQRLGF 126
+ TG D ++ A L+ LG
Sbjct: 157 LVVTGGKEVDDARQAIDVIVERLEDLGL 184
Score = 42.0 bits (97), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 32/63 (50%)
Query: 132 NFRVVNVLGTCSMPFAIRILQFSEKHRAAEYEPELHPGVTYRITRPKATLKIFSTGGITV 191
+ + NV+ + S+ + + + A+Y+PE PG+ YR T PK+ IF +G I
Sbjct: 7 SIEIENVVASSSIGQELDLQSLAMDLEGADYDPENFPGLVYRTTDPKSAALIFRSGKIVC 66
Query: 192 TAC 194
T
Sbjct: 67 TGA 69
>gi|383619863|ref|ZP_09946269.1| transcription factor [Halobiforma lacisalsi AJ5]
gi|435849205|ref|YP_007311455.1| TATA-box binding protein (TBP), component of TFIID and TFIIIB
[Natronococcus occultus SP4]
gi|448312598|ref|ZP_21502340.1| transcription factor [Natronolimnobius innermongolicus JCM 12255]
gi|448315726|ref|ZP_21505366.1| transcription factor [Natronococcus jeotgali DSM 18795]
gi|448401315|ref|ZP_21571551.1| transcription factor [Haloterrigena limicola JCM 13563]
gi|448696585|ref|ZP_21697997.1| transcription factor [Halobiforma lacisalsi AJ5]
gi|448708683|ref|ZP_21701101.1| transcription factor [Halobiforma nitratireducens JCM 10879]
gi|433675473|gb|AGB39665.1| TATA-box binding protein (TBP), component of TFIID and TFIIIB
[Natronococcus occultus SP4]
gi|445601049|gb|ELY55043.1| transcription factor [Natronolimnobius innermongolicus JCM 12255]
gi|445610861|gb|ELY64628.1| transcription factor [Natronococcus jeotgali DSM 18795]
gi|445666578|gb|ELZ19237.1| transcription factor [Haloterrigena limicola JCM 13563]
gi|445783213|gb|EMA34048.1| transcription factor [Halobiforma lacisalsi AJ5]
gi|445793090|gb|EMA43681.1| transcription factor [Halobiforma nitratireducens JCM 10879]
Length = 186
Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 46/160 (28%), Positives = 75/160 (46%), Gaps = 6/160 (3%)
Query: 39 DPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYRREN--GMVTMKLRKPYTTASIWSS 96
DP+ I I NVV S + L+L+ +A++ +Y E G+V + + P + A I+ S
Sbjct: 3 DPKDTINIENVVASTGIGQELDLQSVAMDLEGADYDPEQFPGLV-YRTQNPKSAALIFRS 61
Query: 97 GKITCTGATSEDQSKIAARRYARCLQRLGFKARFT-NFRVVNVLGTCSMP--FAIRILQF 153
GKI CTGA S D + R L+ L + V N++ + + + +
Sbjct: 62 GKIVCTGAKSTDDVHESLRIVFDKLRELQIQVNEDPEIVVQNIVTSADLGRNLNLNAIAI 121
Query: 154 SEKHRAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTA 193
EYEPE PG+ YR+ P+ +F +G + +T
Sbjct: 122 GLGLENIEYEPEQFPGLVYRLDEPEVVALLFGSGKLVITG 161
Score = 46.6 bits (109), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 50/93 (53%), Gaps = 7/93 (7%)
Query: 38 HDPEVDIIINNVVCSFSVRCHLNLRQIALN-GV-NVEYRREN--GMVTMKLRKPYTTASI 93
DPE I++ N+V S + +LNL IA+ G+ N+EY E G+V +L +P A +
Sbjct: 95 EDPE--IVVQNIVTSADLGRNLNLNAIAIGLGLENIEYEPEQFPGLV-YRLDEPEVVALL 151
Query: 94 WSSGKITCTGATSEDQSKIAARRYARCLQRLGF 126
+ SGK+ TG + ++ A + L+ LG
Sbjct: 152 FGSGKLVITGGKKPEDAEHAVDKIVSRLEDLGL 184
Score = 39.3 bits (90), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 31/64 (48%)
Query: 137 NVLGTCSMPFAIRILQFSEKHRAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTACND 196
NV+ + + + + + A+Y+PE PG+ YR PK+ IF +G I T
Sbjct: 12 NVVASTGIGQELDLQSVAMDLEGADYDPEQFPGLVYRTQNPKSAALIFRSGKIVCTGAKS 71
Query: 197 SNKI 200
++ +
Sbjct: 72 TDDV 75
>gi|167044379|gb|ABZ09056.1| putative transcription factor TFIID (or TATA-binding protein, TBP)
[uncultured marine crenarchaeote HF4000_APKG6D3]
Length = 186
Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 45/158 (28%), Positives = 77/158 (48%), Gaps = 4/158 (2%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYRREN--GMVTMKLRKPYTTASIWSSGKITCTG 103
I NVV S SV ++L+ + E+ E G+V +L+ P T I+ SGK+ CTG
Sbjct: 10 IENVVASASVDQAIDLKDVTKKFPETEWHPEQFPGLV-FRLKSPKTATLIFRSGKMVCTG 68
Query: 104 ATSEDQSKIAARRYARCLQRLGFKARFTN-FRVVNVLGTCSMPFAIRILQFSEKHRAAEY 162
SE + A R + L++ K + V N++ + S+ I + + + + Y
Sbjct: 69 GKSEAMAIKAVRTVVKQLRKGKIKIKKDAVITVQNIVASGSLGGKIHLEDAARRLPRSMY 128
Query: 163 EPELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
EPE PG+ +R+ PK L +F++G + T + +
Sbjct: 129 EPEQFPGLIHRMVDPKTVLLLFASGKLVCTGAKKESDV 166
>gi|295862105|gb|ADG54777.1| CG18009 [Drosophila yakuba]
Length = 240
Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/68 (48%), Positives = 45/68 (66%), Gaps = 1/68 (1%)
Query: 8 TTHSSHSEQEPPPTQTVVPIQNHAPPQPPAHD-PEVDIIINNVVCSFSVRCHLNLRQIAL 66
+++++ S + P +P+ N A + D PE+DI+INNVVCSFSV CHL LR IAL
Sbjct: 173 SSNNAKSIGDQQPENQPLPVVNAANDGNASDDEPELDIVINNVVCSFSVGCHLKLRDIAL 232
Query: 67 NGVNVEYR 74
G NVE+R
Sbjct: 233 QGSNVEFR 240
>gi|448475876|ref|ZP_21603231.1| transcription factor [Halorubrum aidingense JCM 13560]
gi|445816094|gb|EMA66003.1| transcription factor [Halorubrum aidingense JCM 13560]
Length = 185
Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 47/161 (29%), Positives = 76/161 (47%), Gaps = 9/161 (5%)
Query: 39 DPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYRREN--GMVTMKLRKPYTTASIWSS 96
DP+ I I NVV S + L+L+ +A++ +Y E G+V + P + A I+ S
Sbjct: 3 DPKETITIENVVASTGIGQELDLQSVAMDLEGADYDPEQFPGLV-YRTTDPKSAALIFRS 61
Query: 97 GKITCTGATSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRI----LQ 152
GKI CTGA+S D + L+ L V N++ + + ++ + +
Sbjct: 62 GKIVCTGASSIDAVHESLAIVFDELRALQIPIDDPEITVQNIVTSADLGESLNLNAIAIG 121
Query: 153 FSEKHRAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTA 193
+H EYEPE PG+ YR+ P +F +G + VT
Sbjct: 122 LGLEH--IEYEPEQFPGLVYRLDEPDVVALLFGSGKLVVTG 160
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 48/97 (49%), Gaps = 7/97 (7%)
Query: 34 QPPAHDPEVDIIINNVVCSFSVRCHLNLRQIALN-GVN-VEYRREN--GMVTMKLRKPYT 89
Q P DPE I + N+V S + LNL IA+ G+ +EY E G+V +L +P
Sbjct: 90 QIPIDDPE--ITVQNIVTSADLGESLNLNAIAIGLGLEHIEYEPEQFPGLV-YRLDEPDV 146
Query: 90 TASIWSSGKITCTGATSEDQSKIAARRYARCLQRLGF 126
A ++ SGK+ TG T+ D + A L LG
Sbjct: 147 VALLFGSGKLVVTGGTTPDDAAAAVDVIVEELTGLGL 183
Score = 40.0 bits (92), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 32/64 (50%)
Query: 137 NVLGTCSMPFAIRILQFSEKHRAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTACND 196
NV+ + + + + + A+Y+PE PG+ YR T PK+ IF +G I T +
Sbjct: 12 NVVASTGIGQELDLQSVAMDLEGADYDPEQFPGLVYRTTDPKSAALIFRSGKIVCTGASS 71
Query: 197 SNKI 200
+ +
Sbjct: 72 IDAV 75
>gi|257386786|ref|YP_003176559.1| TATA-box binding family protein [Halomicrobium mukohataei DSM
12286]
gi|257169093|gb|ACV46852.1| TATA-box binding family protein [Halomicrobium mukohataei DSM
12286]
Length = 186
Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 46/160 (28%), Positives = 75/160 (46%), Gaps = 6/160 (3%)
Query: 39 DPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYRREN--GMVTMKLRKPYTTASIWSS 96
DP+ I I NVV S + L+L+ +A++ +Y E G+V + + P + A I+ S
Sbjct: 3 DPKETINIENVVASTGIGQELDLQSVAMDLEGADYDPEQFPGLV-YRTQDPKSAALIFRS 61
Query: 97 GKITCTGATSEDQSKIAARRYARCLQRLGFKARFT-NFRVVNVLGTCSMPFAIRI--LQF 153
GKI CTGA S D + R L+ L + V N++ + + + + +
Sbjct: 62 GKIVCTGAKSTDDVHQSLRIVFDKLRDLNIQVDDDPEIVVQNIVTSADLGRTLNLNAIAI 121
Query: 154 SEKHRAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTA 193
EYEPE PG+ YR+ P +F +G + +T
Sbjct: 122 GLGLENIEYEPEQFPGLVYRLDDPDVVALLFGSGKLVITG 161
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 48/93 (51%), Gaps = 7/93 (7%)
Query: 38 HDPEVDIIINNVVCSFSVRCHLNLRQIALN-GV-NVEYRREN--GMVTMKLRKPYTTASI 93
DPE I++ N+V S + LNL IA+ G+ N+EY E G+V +L P A +
Sbjct: 95 DDPE--IVVQNIVTSADLGRTLNLNAIAIGLGLENIEYEPEQFPGLV-YRLDDPDVVALL 151
Query: 94 WSSGKITCTGATSEDQSKIAARRYARCLQRLGF 126
+ SGK+ TG D +K A + L+ LG
Sbjct: 152 FGSGKLVITGGKEPDDAKEAVDKIVSRLEDLGL 184
Score = 39.7 bits (91), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 31/64 (48%)
Query: 137 NVLGTCSMPFAIRILQFSEKHRAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTACND 196
NV+ + + + + + A+Y+PE PG+ YR PK+ IF +G I T
Sbjct: 12 NVVASTGIGQELDLQSVAMDLEGADYDPEQFPGLVYRTQDPKSAALIFRSGKIVCTGAKS 71
Query: 197 SNKI 200
++ +
Sbjct: 72 TDDV 75
>gi|284163428|ref|YP_003401707.1| TATA-box binding family protein [Haloterrigena turkmenica DSM 5511]
gi|448307952|ref|ZP_21497838.1| transcription factor [Natronorubrum bangense JCM 10635]
gi|448320837|ref|ZP_21510322.1| transcription factor [Natronococcus amylolyticus DSM 10524]
gi|448330303|ref|ZP_21519586.1| transcription factor [Natrinema versiforme JCM 10478]
gi|448351218|ref|ZP_21540027.1| transcription factor [Natrialba taiwanensis DSM 12281]
gi|448364173|ref|ZP_21552767.1| transcription factor [Natrialba asiatica DSM 12278]
gi|448367160|ref|ZP_21555008.1| transcription factor [Natrialba aegyptia DSM 13077]
gi|448388559|ref|ZP_21565334.1| transcription factor [Haloterrigena salina JCM 13891]
gi|284013083|gb|ADB59034.1| TATA-box binding family protein [Haloterrigena turkmenica DSM 5511]
gi|445594922|gb|ELY49056.1| transcription factor [Natronorubrum bangense JCM 10635]
gi|445605264|gb|ELY59194.1| transcription factor [Natronococcus amylolyticus DSM 10524]
gi|445611982|gb|ELY65723.1| transcription factor [Natrinema versiforme JCM 10478]
gi|445634902|gb|ELY88076.1| transcription factor [Natrialba taiwanensis DSM 12281]
gi|445645061|gb|ELY98068.1| transcription factor [Natrialba asiatica DSM 12278]
gi|445653644|gb|ELZ06513.1| transcription factor [Natrialba aegyptia DSM 13077]
gi|445670314|gb|ELZ22917.1| transcription factor [Haloterrigena salina JCM 13891]
Length = 186
Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 46/160 (28%), Positives = 75/160 (46%), Gaps = 6/160 (3%)
Query: 39 DPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYRREN--GMVTMKLRKPYTTASIWSS 96
DP+ I I NVV S + L+L+ +A++ +Y E G+V + + P + A I+ S
Sbjct: 3 DPKDTINIENVVASTGIGQELDLQSVAMDLEGADYDPEQFPGLV-YRTQNPKSAALIFRS 61
Query: 97 GKITCTGATSEDQSKIAARRYARCLQRLGFKARFT-NFRVVNVLGTCSMP--FAIRILQF 153
GKI CTGA S D + R L+ L + V N++ + + + +
Sbjct: 62 GKIVCTGAKSTDDVHESLRIVFDKLRELQIQVNEDPEIVVQNIVTSADLGRNLNLNAIAI 121
Query: 154 SEKHRAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTA 193
EYEPE PG+ YR+ P+ +F +G + +T
Sbjct: 122 GLGLENIEYEPEQFPGLVYRLDEPEVVALLFGSGKLVITG 161
Score = 45.4 bits (106), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 49/93 (52%), Gaps = 7/93 (7%)
Query: 38 HDPEVDIIINNVVCSFSVRCHLNLRQIALN-GV-NVEYRREN--GMVTMKLRKPYTTASI 93
DPE I++ N+V S + +LNL IA+ G+ N+EY E G+V +L +P A +
Sbjct: 95 EDPE--IVVQNIVTSADLGRNLNLNAIAIGLGLENIEYEPEQFPGLV-YRLDEPEVVALL 151
Query: 94 WSSGKITCTGATSEDQSKIAARRYARCLQRLGF 126
+ SGK+ TG ++ A + L+ LG
Sbjct: 152 FGSGKLVITGGKKPKDAEHAVDKIVSRLEDLGL 184
Score = 39.3 bits (90), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 31/64 (48%)
Query: 137 NVLGTCSMPFAIRILQFSEKHRAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTACND 196
NV+ + + + + + A+Y+PE PG+ YR PK+ IF +G I T
Sbjct: 12 NVVASTGIGQELDLQSVAMDLEGADYDPEQFPGLVYRTQNPKSAALIFRSGKIVCTGAKS 71
Query: 197 SNKI 200
++ +
Sbjct: 72 TDDV 75
>gi|397772369|ref|YP_006539915.1| TATA-box binding family protein [Natrinema sp. J7-2]
gi|448342237|ref|ZP_21531189.1| transcription factor [Natrinema gari JCM 14663]
gi|448346767|ref|ZP_21535649.1| transcription factor [Natrinema altunense JCM 12890]
gi|397681462|gb|AFO55839.1| TATA-box binding family protein [Natrinema sp. J7-2]
gi|445626228|gb|ELY79577.1| transcription factor [Natrinema gari JCM 14663]
gi|445632029|gb|ELY85252.1| transcription factor [Natrinema altunense JCM 12890]
Length = 186
Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 46/160 (28%), Positives = 75/160 (46%), Gaps = 6/160 (3%)
Query: 39 DPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYRREN--GMVTMKLRKPYTTASIWSS 96
DP+ I I NVV S + L+L+ +A++ +Y E G+V + + P + A I+ S
Sbjct: 3 DPKDTINIENVVASTGIGQELDLQSVAMDLEGADYDPEQFPGLV-YRTQNPKSAALIFRS 61
Query: 97 GKITCTGATSEDQSKIAARRYARCLQRLGFKARFT-NFRVVNVLGTCSMP--FAIRILQF 153
GKI CTGA S D + R L+ L + V N++ + + + +
Sbjct: 62 GKIVCTGAKSTDDVHESLRIVFDKLRELQIQVNEDPEIVVQNIVTSADLGRNLNLNAIAI 121
Query: 154 SEKHRAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTA 193
EYEPE PG+ YR+ P+ +F +G + +T
Sbjct: 122 GLGLENIEYEPEQFPGLVYRLDEPEVVALLFGSGKLVITG 161
Score = 44.3 bits (103), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 49/93 (52%), Gaps = 7/93 (7%)
Query: 38 HDPEVDIIINNVVCSFSVRCHLNLRQIALN-GV-NVEYRREN--GMVTMKLRKPYTTASI 93
DPE I++ N+V S + +LNL IA+ G+ N+EY E G+V +L +P A +
Sbjct: 95 EDPE--IVVQNIVTSADLGRNLNLNAIAIGLGLENIEYEPEQFPGLV-YRLDEPEVVALL 151
Query: 94 WSSGKITCTGATSEDQSKIAARRYARCLQRLGF 126
+ SGK+ TG ++ A + L+ LG
Sbjct: 152 FGSGKLVITGGKKPVDAEHAVDKIVSRLEDLGL 184
Score = 39.3 bits (90), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 31/64 (48%)
Query: 137 NVLGTCSMPFAIRILQFSEKHRAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTACND 196
NV+ + + + + + A+Y+PE PG+ YR PK+ IF +G I T
Sbjct: 12 NVVASTGIGQELDLQSVAMDLEGADYDPEQFPGLVYRTQNPKSAALIFRSGKIVCTGAKS 71
Query: 197 SNKI 200
++ +
Sbjct: 72 TDDV 75
>gi|340344813|ref|ZP_08667945.1| TATA-box binding protein [Candidatus Nitrosoarchaeum koreensis MY1]
gi|339519954|gb|EGP93677.1| TATA-box binding protein [Candidatus Nitrosoarchaeum koreensis MY1]
Length = 186
Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 44/150 (29%), Positives = 78/150 (52%), Gaps = 4/150 (2%)
Query: 44 IIINNVVCSFSVRCHLNLRQIALNGVNVEYRREN--GMVTMKLRKPYTTASIWSSGKITC 101
I I NVV S ++ L+L I +VEY E G V +L+ P T ++SSGK+ C
Sbjct: 8 IAIVNVVASATIDQKLDLVDITKKFPDVEYHPEQFPGAV-FRLKNPKTATLLFSSGKMVC 66
Query: 102 TGATSEDQSKIAARRYARCLQRLGFKAR-FTNFRVVNVLGTCSMPFAIRILQFSEKHRAA 160
TGA S++ ++ A + L++ K + + N++ + ++ + + Q + +
Sbjct: 67 TGAKSQELAEDAVSKVVEILRKGKIKIKNDATVTIQNIVSSINLGGRVNLEQAARTLPRS 126
Query: 161 EYEPELHPGVTYRITRPKATLKIFSTGGIT 190
YEPE PG+ +R+ PK + IF++G +
Sbjct: 127 MYEPEQFPGLIHRMLDPKTVILIFASGKLV 156
Score = 41.6 bits (96), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 32/60 (53%)
Query: 135 VVNVLGTCSMPFAIRILQFSEKHRAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTAC 194
+VNV+ + ++ + ++ ++K EY PE PG +R+ PK +FS+G + T
Sbjct: 10 IVNVVASATIDQKLDLVDITKKFPDVEYHPEQFPGAVFRLKNPKTATLLFSSGKMVCTGA 69
>gi|433637530|ref|YP_007283290.1| TATA-box binding protein (TBP), component of TFIID and TFIIIB
[Halovivax ruber XH-70]
gi|448375336|ref|ZP_21558902.1| transcription factor [Halovivax asiaticus JCM 14624]
gi|433289334|gb|AGB15157.1| TATA-box binding protein (TBP), component of TFIID and TFIIIB
[Halovivax ruber XH-70]
gi|445658890|gb|ELZ11703.1| transcription factor [Halovivax asiaticus JCM 14624]
Length = 186
Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 46/160 (28%), Positives = 75/160 (46%), Gaps = 6/160 (3%)
Query: 39 DPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYRREN--GMVTMKLRKPYTTASIWSS 96
DP+ I I NVV S + L+L+ +A++ +Y E G+V + + P + A I+ S
Sbjct: 3 DPKDTINIENVVASTGIGQELDLQSVAMDLEGADYDPEQFPGLV-YRTQNPKSAALIFRS 61
Query: 97 GKITCTGATSEDQSKIAARRYARCLQRLGFKARFT-NFRVVNVLGTCSMP--FAIRILQF 153
GKI CTGA S D + R L+ L + V N++ + + + +
Sbjct: 62 GKIVCTGAKSTDDVHESLRIVFDKLRELQIQVNEDPEIVVQNIVTSADLGRNLNLNAIAI 121
Query: 154 SEKHRAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTA 193
EYEPE PG+ YR+ P+ +F +G + +T
Sbjct: 122 GLGLENIEYEPEQFPGLVYRLDEPEVVALLFGSGKLVITG 161
Score = 43.9 bits (102), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 49/93 (52%), Gaps = 7/93 (7%)
Query: 38 HDPEVDIIINNVVCSFSVRCHLNLRQIALN-GV-NVEYRREN--GMVTMKLRKPYTTASI 93
DPE I++ N+V S + +LNL IA+ G+ N+EY E G+V +L +P A +
Sbjct: 95 EDPE--IVVQNIVTSADLGRNLNLNAIAIGLGLENIEYEPEQFPGLV-YRLDEPEVVALL 151
Query: 94 WSSGKITCTGATSEDQSKIAARRYARCLQRLGF 126
+ SGK+ TG ++ A + L+ LG
Sbjct: 152 FGSGKLVITGGKRPVDAEHAVDKIVSRLEDLGL 184
Score = 39.3 bits (90), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 31/64 (48%)
Query: 137 NVLGTCSMPFAIRILQFSEKHRAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTACND 196
NV+ + + + + + A+Y+PE PG+ YR PK+ IF +G I T
Sbjct: 12 NVVASTGIGQELDLQSVAMDLEGADYDPEQFPGLVYRTQNPKSAALIFRSGKIVCTGAKS 71
Query: 197 SNKI 200
++ +
Sbjct: 72 TDDV 75
>gi|452205985|ref|YP_007486107.1| TATA-binding transcription initiation factor [Natronomonas
moolapensis 8.8.11]
gi|452082085|emb|CCQ35336.1| TATA-binding transcription initiation factor [Natronomonas
moolapensis 8.8.11]
Length = 187
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 46/161 (28%), Positives = 75/161 (46%), Gaps = 6/161 (3%)
Query: 38 HDPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYRREN--GMVTMKLRKPYTTASIWS 95
DP+ I I NVV S + L+L+ +A++ +Y E G+V + ++P + A I+
Sbjct: 2 QDPKETINIENVVASTGIGQELDLQSVAMDLEGADYDPEQFPGLV-YRTQEPKSAALIFR 60
Query: 96 SGKITCTGATSEDQSKIAARRYARCLQRLGFKARFT-NFRVVNVLGTCSMP--FAIRILQ 152
SGKI CTGA S D + R L+ L + V N++ + + + +
Sbjct: 61 SGKIVCTGAKSTDDVHESLRIVFDKLRDLEIQVDEDPEIVVQNIVTSADLGRNLNLNAIA 120
Query: 153 FSEKHRAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTA 193
EYEPE PG+ YR+ P +F +G + +T
Sbjct: 121 IGLGLENIEYEPEQFPGLVYRLDDPDVVALLFGSGKLVITG 161
Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 49/93 (52%), Gaps = 7/93 (7%)
Query: 38 HDPEVDIIINNVVCSFSVRCHLNLRQIALN-GV-NVEYRREN--GMVTMKLRKPYTTASI 93
DPE I++ N+V S + +LNL IA+ G+ N+EY E G+V +L P A +
Sbjct: 95 EDPE--IVVQNIVTSADLGRNLNLNAIAIGLGLENIEYEPEQFPGLV-YRLDDPDVVALL 151
Query: 94 WSSGKITCTGATSEDQSKIAARRYARCLQRLGF 126
+ SGK+ TG D +K A + L+ LG
Sbjct: 152 FGSGKLVITGGKEPDDAKKAVDKIVSRLEELGL 184
Score = 40.0 bits (92), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 31/64 (48%)
Query: 137 NVLGTCSMPFAIRILQFSEKHRAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTACND 196
NV+ + + + + + A+Y+PE PG+ YR PK+ IF +G I T
Sbjct: 12 NVVASTGIGQELDLQSVAMDLEGADYDPEQFPGLVYRTQEPKSAALIFRSGKIVCTGAKS 71
Query: 197 SNKI 200
++ +
Sbjct: 72 TDDV 75
>gi|345006113|ref|YP_004808966.1| TATA-box-binding protein [halophilic archaeon DL31]
gi|344321739|gb|AEN06593.1| TATA-box-binding protein [halophilic archaeon DL31]
Length = 186
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 45/160 (28%), Positives = 75/160 (46%), Gaps = 6/160 (3%)
Query: 39 DPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYRREN--GMVTMKLRKPYTTASIWSS 96
DP+ I I NVV S + L+L+ +A++ +Y E G+V + +P + A I+ S
Sbjct: 3 DPKETISIENVVASTGIGLELDLQSVAMDLEGADYDPEQFPGLV-YRTEEPKSAALIFRS 61
Query: 97 GKITCTGATSEDQSKIAARRYARCLQRLGFKARFT-NFRVVNVLGTCSMPFAIRI--LQF 153
GKI CTGA S D + L++L V N++ + + ++ + +
Sbjct: 62 GKIVCTGAKSTDAVHESLGIVFDELRKLDIPVEDGPEITVQNIVSSADLGESLNLNAIAI 121
Query: 154 SEKHRAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTA 193
EYEPE PG+ YR+ P +F +G + +T
Sbjct: 122 GLGLENIEYEPEQFPGLVYRLEEPDVVALLFGSGKLVITG 161
Score = 40.8 bits (94), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 31/64 (48%)
Query: 137 NVLGTCSMPFAIRILQFSEKHRAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTACND 196
NV+ + + + + + A+Y+PE PG+ YR PK+ IF +G I T
Sbjct: 12 NVVASTGIGLELDLQSVAMDLEGADYDPEQFPGLVYRTEEPKSAALIFRSGKIVCTGAKS 71
Query: 197 SNKI 200
++ +
Sbjct: 72 TDAV 75
>gi|435846586|ref|YP_007308836.1| TATA-box binding protein (TBP), component of TFIID and TFIIIB
[Natronococcus occultus SP4]
gi|433672854|gb|AGB37046.1| TATA-box binding protein (TBP), component of TFIID and TFIIIB
[Natronococcus occultus SP4]
Length = 185
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/159 (25%), Positives = 73/159 (45%), Gaps = 5/159 (3%)
Query: 39 DPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYRREN--GMVTMKLRKPYTTASIWSS 96
DP I I NVV S +L+ +A + N +Y + G+V ++ +P + I+ +
Sbjct: 3 DPTDTITIENVVASGDTGREFDLQTLAEDLDNAQYDPKTFPGIV-YRIDEPKSAGLIFHT 61
Query: 97 GKITCTGATSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRI--LQFS 154
GK+ CTG+ S + + +RLG F V N++ + + +++ + +
Sbjct: 62 GKVVCTGSKSVEDINKSVESIFNAFERLGISIEENPFTVQNIVSSADLGYSLNLNAVAVG 121
Query: 155 EKHRAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTA 193
EYEPE PG+ YR+ P +F +G +T
Sbjct: 122 LGLGQIEYEPEQFPGLVYRLDEPDVVALLFGSGKTVITG 160
Score = 39.3 bits (90), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 5/63 (7%)
Query: 140 GTCSMPFAIRILQFSEKHRAAEYEPELHPGVTYRITRPKATLKIFSTGGITVT---ACND 196
G F ++ L +E A+Y+P+ PG+ YRI PK+ IF TG + T + D
Sbjct: 17 GDTGREFDLQTL--AEDLDNAQYDPKTFPGIVYRIDEPKSAGLIFHTGKVVCTGSKSVED 74
Query: 197 SNK 199
NK
Sbjct: 75 INK 77
>gi|222481033|ref|YP_002567270.1| transcription factor [Halorubrum lacusprofundi ATCC 49239]
gi|222453935|gb|ACM58200.1| TATA-box binding family protein [Halorubrum lacusprofundi ATCC
49239]
Length = 185
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 46/159 (28%), Positives = 73/159 (45%), Gaps = 5/159 (3%)
Query: 39 DPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYRREN--GMVTMKLRKPYTTASIWSS 96
DP+ I I NVV S + L+L+ +A++ +Y E G+V + P + A I+ S
Sbjct: 3 DPKETITIENVVASTGIGQELDLQSVAMDLEGADYDPEQFPGLV-YRTTDPKSAALIFRS 61
Query: 97 GKITCTGATSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRI--LQFS 154
GKI CTGA S D + L+ L V N++ + + ++ + +
Sbjct: 62 GKIVCTGANSIDAVHESLAIVFDELRGLQIPIDDPEITVQNIVTSADLGESLNLNAIAIG 121
Query: 155 EKHRAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTA 193
EYEPE PG+ YRI P +F +G + +T
Sbjct: 122 LGLEHIEYEPEQFPGLVYRIDEPDVVALLFGSGKLVITG 160
Score = 50.1 bits (118), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 50/99 (50%), Gaps = 7/99 (7%)
Query: 34 QPPAHDPEVDIIINNVVCSFSVRCHLNLRQIALN-GV-NVEYRREN--GMVTMKLRKPYT 89
Q P DPE I + N+V S + LNL IA+ G+ ++EY E G+V ++ +P
Sbjct: 90 QIPIDDPE--ITVQNIVTSADLGESLNLNAIAIGLGLEHIEYEPEQFPGLV-YRIDEPDV 146
Query: 90 TASIWSSGKITCTGATSEDQSKIAARRYARCLQRLGFKA 128
A ++ SGK+ TG TS D + A L LG A
Sbjct: 147 VALLFGSGKLVITGGTSPDDAAAAVDVIVEKLDGLGLLA 185
Score = 42.4 bits (98), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 32/64 (50%)
Query: 137 NVLGTCSMPFAIRILQFSEKHRAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTACND 196
NV+ + + + + + A+Y+PE PG+ YR T PK+ IF +G I T N
Sbjct: 12 NVVASTGIGQELDLQSVAMDLEGADYDPEQFPGLVYRTTDPKSAALIFRSGKIVCTGANS 71
Query: 197 SNKI 200
+ +
Sbjct: 72 IDAV 75
>gi|340345517|ref|ZP_08668649.1| TATA-box binding protein [Candidatus Nitrosoarchaeum koreensis MY1]
gi|339520658|gb|EGP94381.1| TATA-box binding protein [Candidatus Nitrosoarchaeum koreensis MY1]
Length = 187
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 45/160 (28%), Positives = 80/160 (50%), Gaps = 8/160 (5%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYRREN--GMVTMKLRKPYTTASIWSSGKITCTG 103
+ NVV S SV ++L +I + EY E G+V +L+ P T I+ +GK+ CTG
Sbjct: 10 VENVVASASVEQKIDLNEITEKFPDTEYHPEQFPGLV-FRLQNPRTATLIFRTGKMVCTG 68
Query: 104 ATSEDQSKIAARRYARCLQRLGFKARFTNFRVV---NVLGTCSMPFAIRILQFSEKHRAA 160
A SED + A + L++ K + N V+ N++ ++ I + + + +
Sbjct: 69 AKSEDMAIKAVNTVVQKLRK--GKIKIKNDAVITVQNIVAAINLGGKIHLEKAARTLPRS 126
Query: 161 EYEPELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
YEPE PG+ +R+ PK + +F++G + T + +
Sbjct: 127 MYEPEQFPGLIHRMLDPKTVILLFASGKLVCTGAKKESDV 166
>gi|118431620|ref|NP_148219.2| transcription factor [Aeropyrum pernix K1]
gi|152031704|sp|Q9YAT1.3|TBP_AERPE RecName: Full=TATA-box-binding protein; AltName: Full=Box A-binding
protein; Short=BAP; AltName: Full=TATA sequence-binding
protein; Short=TBP; AltName: Full=TATA-box factor
gi|116062944|dbj|BAA80867.2| TATA-box binding protein [Aeropyrum pernix K1]
Length = 203
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/164 (25%), Positives = 80/164 (48%), Gaps = 4/164 (2%)
Query: 40 PEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYRREN--GMVTMKLRKPYTTASIWSSG 97
P+ ++ I N+V + + L+L I +V+Y + G+V +L P T I+ SG
Sbjct: 19 PKPEVKIENIVATVILENQLDLNLIETKIQDVDYNPDQFPGLVY-RLESPRVTVLIFKSG 77
Query: 98 KITCTGATSEDQSKIAARRYARCLQRLGFKARFT-NFRVVNVLGTCSMPFAIRILQFSEK 156
K+ TGA S +Q ++ + G ++ N++ + ++ I + + + +
Sbjct: 78 KMVITGAKSINQLIHVVKKLLKAFADQGIPISGKPQIQIQNIVASANLKVYIDLEKAALE 137
Query: 157 HRAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
+ YEPE PG+ YR+ P+ + IFS+G + +T N++
Sbjct: 138 FENSLYEPEQFPGLIYRMDEPRVVMLIFSSGKMVITGAKMENEV 181
Score = 45.4 bits (106), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 50/91 (54%), Gaps = 5/91 (5%)
Query: 35 PPAHDPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYRREN--GMVTMKLRKPYTTAS 92
P + P++ I N+V S +++ +++L + AL N Y E G++ ++ +P
Sbjct: 107 PISGKPQIQI--QNIVASANLKVYIDLEKAALEFENSLYEPEQFPGLIY-RMDEPRVVML 163
Query: 93 IWSSGKITCTGATSEDQSKIAARRYARCLQR 123
I+SSGK+ TGA E++ A ++ AR L+
Sbjct: 164 IFSSGKMVITGAKMENEVYDAVKKVARKLKE 194
>gi|429191762|ref|YP_007177440.1| TATA-box binding protein [Natronobacterium gregoryi SP2]
gi|448325091|ref|ZP_21514490.1| transcription factor [Natronobacterium gregoryi SP2]
gi|429135980|gb|AFZ72991.1| TATA-box binding protein (TBP), component of TFIID and TFIIIB
[Natronobacterium gregoryi SP2]
gi|445616448|gb|ELY70074.1| transcription factor [Natronobacterium gregoryi SP2]
Length = 186
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 46/160 (28%), Positives = 75/160 (46%), Gaps = 6/160 (3%)
Query: 39 DPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYRREN--GMVTMKLRKPYTTASIWSS 96
DP+ I I NVV S + L+L+ +A++ +Y E G+V + + P + A I+ S
Sbjct: 3 DPKDTINIENVVASTGIGQELDLQSVAMDLEGADYDPEQFPGLV-YRTQNPKSAALIFRS 61
Query: 97 GKITCTGATSEDQSKIAARRYARCLQRLGFKARFT-NFRVVNVLGTCSMP--FAIRILQF 153
GKI CTGA S D + R L+ L + V N++ + + + +
Sbjct: 62 GKIVCTGAKSTDDVHESLRIVFDKLRELQIQVNEDPEIVVQNIVTSADLGRNLNLNAIAI 121
Query: 154 SEKHRAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTA 193
EYEPE PG+ YR+ P+ +F +G + +T
Sbjct: 122 GLGLENIEYEPEQFPGLVYRLDDPEVVALLFGSGKLVITG 161
Score = 45.8 bits (107), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 49/93 (52%), Gaps = 7/93 (7%)
Query: 38 HDPEVDIIINNVVCSFSVRCHLNLRQIALN-GV-NVEYRREN--GMVTMKLRKPYTTASI 93
DPE I++ N+V S + +LNL IA+ G+ N+EY E G+V +L P A +
Sbjct: 95 EDPE--IVVQNIVTSADLGRNLNLNAIAIGLGLENIEYEPEQFPGLV-YRLDDPEVVALL 151
Query: 94 WSSGKITCTGATSEDQSKIAARRYARCLQRLGF 126
+ SGK+ TG + ++ A + L+ LG
Sbjct: 152 FGSGKLVITGGKKPEDAEHAVDKIVTRLEDLGL 184
Score = 39.3 bits (90), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 31/64 (48%)
Query: 137 NVLGTCSMPFAIRILQFSEKHRAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTACND 196
NV+ + + + + + A+Y+PE PG+ YR PK+ IF +G I T
Sbjct: 12 NVVASTGIGQELDLQSVAMDLEGADYDPEQFPGLVYRTQNPKSAALIFRSGKIVCTGAKS 71
Query: 197 SNKI 200
++ +
Sbjct: 72 TDDV 75
>gi|448302231|ref|ZP_21492214.1| transcription factor [Natronorubrum tibetense GA33]
gi|445581890|gb|ELY36238.1| transcription factor [Natronorubrum tibetense GA33]
Length = 186
Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 46/160 (28%), Positives = 75/160 (46%), Gaps = 6/160 (3%)
Query: 39 DPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYRREN--GMVTMKLRKPYTTASIWSS 96
DP+ I I NVV S + L+L+ +A++ +Y E G+V + + P + A I+ S
Sbjct: 3 DPKDTINIENVVASTGIGQELDLQSVAMDLEGADYDPEQFPGLV-YRTQNPKSAALIFRS 61
Query: 97 GKITCTGATSEDQSKIAARRYARCLQRLGFKARFT-NFRVVNVLGTCSMP--FAIRILQF 153
GKI CTGA S D + R L+ L + V N++ + + + +
Sbjct: 62 GKIVCTGAKSTDDVHESLRIVFDKLRELQIQVNEDPEIVVQNIVTSADLGRNLNLNAIAI 121
Query: 154 SEKHRAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTA 193
EYEPE PG+ YR+ P+ +F +G + +T
Sbjct: 122 GLGLENIEYEPEQFPGLVYRLDDPEVVALLFGSGKLVITG 161
Score = 43.9 bits (102), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 48/93 (51%), Gaps = 7/93 (7%)
Query: 38 HDPEVDIIINNVVCSFSVRCHLNLRQIALN-GV-NVEYRREN--GMVTMKLRKPYTTASI 93
DPE I++ N+V S + +LNL IA+ G+ N+EY E G+V +L P A +
Sbjct: 95 EDPE--IVVQNIVTSADLGRNLNLNAIAIGLGLENIEYEPEQFPGLV-YRLDDPEVVALL 151
Query: 94 WSSGKITCTGATSEDQSKIAARRYARCLQRLGF 126
+ SGK+ TG ++ A + L+ LG
Sbjct: 152 FGSGKLVITGGKKPVDAEHAVDKIVSRLEDLGL 184
Score = 39.3 bits (90), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 31/64 (48%)
Query: 137 NVLGTCSMPFAIRILQFSEKHRAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTACND 196
NV+ + + + + + A+Y+PE PG+ YR PK+ IF +G I T
Sbjct: 12 NVVASTGIGQELDLQSVAMDLEGADYDPEQFPGLVYRTQNPKSAALIFRSGKIVCTGAKS 71
Query: 197 SNKI 200
++ +
Sbjct: 72 TDDV 75
>gi|289581532|ref|YP_003479998.1| TATA-box binding family protein [Natrialba magadii ATCC 43099]
gi|336252658|ref|YP_004595765.1| TATA-box binding family protein [Halopiger xanaduensis SH-6]
gi|433589465|ref|YP_007278961.1| TATA-box binding protein (TBP), component of TFIID and TFIIIB
[Natrinema pellirubrum DSM 15624]
gi|448283054|ref|ZP_21474333.1| transcription factor [Natrialba magadii ATCC 43099]
gi|448354487|ref|ZP_21543243.1| transcription factor [Natrialba hulunbeirensis JCM 10989]
gi|448357153|ref|ZP_21545859.1| transcription factor [Natrialba chahannaoensis JCM 10990]
gi|448381388|ref|ZP_21561591.1| transcription factor [Haloterrigena thermotolerans DSM 11522]
gi|289531085|gb|ADD05436.1| TATA-box binding family protein [Natrialba magadii ATCC 43099]
gi|335336647|gb|AEH35886.1| TATA-box binding family protein [Halopiger xanaduensis SH-6]
gi|433304245|gb|AGB30057.1| TATA-box binding protein (TBP), component of TFIID and TFIIIB
[Natrinema pellirubrum DSM 15624]
gi|445574762|gb|ELY29250.1| transcription factor [Natrialba magadii ATCC 43099]
gi|445637375|gb|ELY90525.1| transcription factor [Natrialba hulunbeirensis JCM 10989]
gi|445649961|gb|ELZ02892.1| transcription factor [Natrialba chahannaoensis JCM 10990]
gi|445663196|gb|ELZ15950.1| transcription factor [Haloterrigena thermotolerans DSM 11522]
Length = 186
Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 46/160 (28%), Positives = 75/160 (46%), Gaps = 6/160 (3%)
Query: 39 DPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYRREN--GMVTMKLRKPYTTASIWSS 96
DP+ I I NVV S + L+L+ +A++ +Y E G+V + + P + A I+ S
Sbjct: 3 DPKDTINIENVVASTGIGQELDLQSVAMDLEGADYDPEQFPGLV-YRTQNPKSAALIFRS 61
Query: 97 GKITCTGATSEDQSKIAARRYARCLQRLGFKARFT-NFRVVNVLGTCSMP--FAIRILQF 153
GKI CTGA S D + R L+ L + V N++ + + + +
Sbjct: 62 GKIVCTGAKSTDDVHESLRIVFDKLRELQIQVNEDPEIVVQNIVTSADLGRNLNLNAIAI 121
Query: 154 SEKHRAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTA 193
EYEPE PG+ YR+ P+ +F +G + +T
Sbjct: 122 GLGLENIEYEPEQFPGLVYRLDDPEVVALLFGSGKLVITG 161
Score = 46.2 bits (108), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 49/93 (52%), Gaps = 7/93 (7%)
Query: 38 HDPEVDIIINNVVCSFSVRCHLNLRQIALN-GV-NVEYRREN--GMVTMKLRKPYTTASI 93
DPE I++ N+V S + +LNL IA+ G+ N+EY E G+V +L P A +
Sbjct: 95 EDPE--IVVQNIVTSADLGRNLNLNAIAIGLGLENIEYEPEQFPGLV-YRLDDPEVVALL 151
Query: 94 WSSGKITCTGATSEDQSKIAARRYARCLQRLGF 126
+ SGK+ TG + ++ A + L+ LG
Sbjct: 152 FGSGKLVITGGKKPEDAEHAVDKIVSRLEDLGL 184
Score = 39.3 bits (90), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 31/64 (48%)
Query: 137 NVLGTCSMPFAIRILQFSEKHRAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTACND 196
NV+ + + + + + A+Y+PE PG+ YR PK+ IF +G I T
Sbjct: 12 NVVASTGIGQELDLQSVAMDLEGADYDPEQFPGLVYRTQNPKSAALIFRSGKIVCTGAKS 71
Query: 197 SNKI 200
++ +
Sbjct: 72 TDDV 75
>gi|10803585|ref|NP_045983.1| transcription factor [Halobacterium sp. NRC-1]
gi|10803718|ref|NP_046116.1| transcription factor [Halobacterium sp. NRC-1]
gi|16120020|ref|NP_395608.1| transcription factor [Halobacterium sp. NRC-1]
gi|16120342|ref|NP_395930.1| transcription factor [Halobacterium sp. NRC-1]
gi|14423949|sp|Q48325.1|TBPB_HALSA RecName: Full=TATA-box-binding protein B; AltName: Full=Box
A-binding protein B; Short=BAP B; AltName: Full=TATA
sequence-binding protein B; Short=TBP B; AltName:
Full=TATA-box factor B
gi|1070345|emb|CAA63691.1| TATA box binding protein [Halobacterium salinarum]
gi|2822316|gb|AAC82822.1| TbpB [Halobacterium sp. NRC-1]
gi|2822449|gb|AAC82955.1| TbpB [Halobacterium sp. NRC-1]
gi|10584112|gb|AAG20743.1| transcription initiation factor IID [Halobacterium sp. NRC-1]
gi|10584490|gb|AAG21065.1| transcription initiation factor IID [Halobacterium sp. NRC-1]
Length = 186
Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 45/160 (28%), Positives = 78/160 (48%), Gaps = 8/160 (5%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYRREN--GMVTMKLRKPYTTASIWSSGKITCTG 103
I NVV S + L L Q++ + EY E+ G+V +L++P + I+ SGK+ CTG
Sbjct: 10 IENVVASSDLGQELALDQLSTDLPGAEYNPEDFPGVV-YRLQEPKSATLIFRSGKVVCTG 68
Query: 104 ATSEDQSKIAARRYARCLQRLGFKARFTN--FRVVNVLGTCSMPFAIRI--LQFSEKHRA 159
A S D A ++ LG +N V N++ + S+ ++ + +
Sbjct: 69 AKSVDDVHEALGIVFGDIRELGIDVT-SNPPIEVQNIVSSASLEQSLNLNAIAIGLGLEQ 127
Query: 160 AEYEPELHPGVTYRITRPKATLKIFSTGGITVTACNDSNK 199
EYEPE PG+ YR+ P + +F +G + +T + ++
Sbjct: 128 IEYEPEQFPGLVYRLDDPDVVVLLFGSGKLVITGGQNPDE 167
Score = 43.5 bits (101), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 31/64 (48%)
Query: 137 NVLGTCSMPFAIRILQFSEKHRAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTACND 196
NV+ + + + + Q S AEY PE PGV YR+ PK+ IF +G + T
Sbjct: 12 NVVASSDLGQELALDQLSTDLPGAEYNPEDFPGVVYRLQEPKSATLIFRSGKVVCTGAKS 71
Query: 197 SNKI 200
+ +
Sbjct: 72 VDDV 75
>gi|386874579|ref|ZP_10116817.1| transcription factor [Candidatus Nitrosopumilus salaria BD31]
gi|386807612|gb|EIJ66993.1| transcription factor [Candidatus Nitrosopumilus salaria BD31]
Length = 186
Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 44/150 (29%), Positives = 77/150 (51%), Gaps = 4/150 (2%)
Query: 44 IIINNVVCSFSVRCHLNLRQIALNGVNVEYRREN--GMVTMKLRKPYTTASIWSSGKITC 101
I I NVV S ++ L+L I VEY E G V +L+ P T ++ SGK+ C
Sbjct: 8 IAIVNVVASATINQRLDLVDITKKFPAVEYHPEQFPGAV-FRLKSPKTATLLFGSGKMVC 66
Query: 102 TGATSEDQSKIAARRYARCLQRLGFKARFTNFRVV-NVLGTCSMPFAIRILQFSEKHRAA 160
TGA S++ ++ A ++ L++ K + + N++ + ++ + + Q + +
Sbjct: 67 TGAKSQELAETAVKKVVELLRKGKVKIKSEPIVTIQNIVSSINLGGKVSLEQAARTLPRS 126
Query: 161 EYEPELHPGVTYRITRPKATLKIFSTGGIT 190
YEPE PG+ +R+ PK + IFS+G +
Sbjct: 127 MYEPEQFPGLIHRMLDPKTVILIFSSGKLV 156
Score = 40.4 bits (93), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 32/61 (52%)
Query: 135 VVNVLGTCSMPFAIRILQFSEKHRAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTAC 194
+VNV+ + ++ + ++ ++K A EY PE PG +R+ PK +F +G + T
Sbjct: 10 IVNVVASATINQRLDLVDITKKFPAVEYHPEQFPGAVFRLKSPKTATLLFGSGKMVCTGA 69
Query: 195 N 195
Sbjct: 70 K 70
>gi|448303994|ref|ZP_21493939.1| transcription factor [Natronorubrum sulfidifaciens JCM 14089]
gi|445592081|gb|ELY46273.1| transcription factor [Natronorubrum sulfidifaciens JCM 14089]
Length = 186
Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 46/160 (28%), Positives = 75/160 (46%), Gaps = 6/160 (3%)
Query: 39 DPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYRREN--GMVTMKLRKPYTTASIWSS 96
DP+ I I NVV S + L+L+ +A++ +Y E G+V + + P + A I+ S
Sbjct: 3 DPKDTINIENVVASTGIGQELDLQSVAMDLEGADYDPEQFPGLV-YRTQNPKSAALIFRS 61
Query: 97 GKITCTGATSEDQSKIAARRYARCLQRLGFKARFT-NFRVVNVLGTCSMP--FAIRILQF 153
GKI CTGA S D + R L+ L + V N++ + + + +
Sbjct: 62 GKIVCTGAKSTDDVHESLRIVFDKLRELQIQVNEDPEIVVQNIVTSADLGRNLNLNAIAI 121
Query: 154 SEKHRAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTA 193
EYEPE PG+ YR+ P+ +F +G + +T
Sbjct: 122 GLGLENIEYEPEQFPGLVYRLDDPEVVALLFGSGKLVITG 161
Score = 45.1 bits (105), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 48/93 (51%), Gaps = 7/93 (7%)
Query: 38 HDPEVDIIINNVVCSFSVRCHLNLRQIALN-GV-NVEYRREN--GMVTMKLRKPYTTASI 93
DPE I++ N+V S + +LNL IA+ G+ N+EY E G+V +L P A +
Sbjct: 95 EDPE--IVVQNIVTSADLGRNLNLNAIAIGLGLENIEYEPEQFPGLV-YRLDDPEVVALL 151
Query: 94 WSSGKITCTGATSEDQSKIAARRYARCLQRLGF 126
+ SGK+ TG ++ A + L+ LG
Sbjct: 152 FGSGKLVITGGKKPKDAEHAVDKIVSRLEDLGL 184
Score = 39.3 bits (90), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 31/64 (48%)
Query: 137 NVLGTCSMPFAIRILQFSEKHRAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTACND 196
NV+ + + + + + A+Y+PE PG+ YR PK+ IF +G I T
Sbjct: 12 NVVASTGIGQELDLQSVAMDLEGADYDPEQFPGLVYRTQNPKSAALIFRSGKIVCTGAKS 71
Query: 197 SNKI 200
++ +
Sbjct: 72 TDDV 75
>gi|76801184|ref|YP_326192.1| transcription factor [Natronomonas pharaonis DSM 2160]
gi|121696850|sp|Q3ITB1.1|TBP_NATPD RecName: Full=TATA-box-binding protein; AltName: Full=Box A-binding
protein; Short=BAP; AltName: Full=TATA sequence-binding
protein; Short=TBP; AltName: Full=TATA-box factor
gi|76557049|emb|CAI48623.1| TATA-binding transcription initiation factor [Natronomonas
pharaonis DSM 2160]
Length = 187
Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 46/161 (28%), Positives = 75/161 (46%), Gaps = 6/161 (3%)
Query: 38 HDPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYRREN--GMVTMKLRKPYTTASIWS 95
DP+ I I NVV S + L+L+ +A++ +Y E G+V + ++P + A I+
Sbjct: 2 QDPKETINIENVVASTGIGQELDLQSVAMDLEGADYDPEQFPGLV-YRTQEPKSAALIFR 60
Query: 96 SGKITCTGATSEDQSKIAARRYARCLQRLGFKARFT-NFRVVNVLGTCSMP--FAIRILQ 152
SGKI CTGA S D + R L+ L + V N++ + + + +
Sbjct: 61 SGKIVCTGAKSTDDVHESLRIVFDKLRDLEIQVDEDPEIVVQNIVTSADLGRNLNLNAIA 120
Query: 153 FSEKHRAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTA 193
EYEPE PG+ YR+ P +F +G + +T
Sbjct: 121 IGLGLENIEYEPEQFPGLVYRLDDPDVVALLFGSGKLVITG 161
Score = 49.3 bits (116), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 49/93 (52%), Gaps = 7/93 (7%)
Query: 38 HDPEVDIIINNVVCSFSVRCHLNLRQIALN-GV-NVEYRREN--GMVTMKLRKPYTTASI 93
DPE I++ N+V S + +LNL IA+ G+ N+EY E G+V +L P A +
Sbjct: 95 EDPE--IVVQNIVTSADLGRNLNLNAIAIGLGLENIEYEPEQFPGLV-YRLDDPDVVALL 151
Query: 94 WSSGKITCTGATSEDQSKIAARRYARCLQRLGF 126
+ SGK+ TG D ++ A + L+ LG
Sbjct: 152 FGSGKLVITGGKEPDDAREAVDKIVSRLEELGL 184
Score = 39.7 bits (91), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 31/64 (48%)
Query: 137 NVLGTCSMPFAIRILQFSEKHRAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTACND 196
NV+ + + + + + A+Y+PE PG+ YR PK+ IF +G I T
Sbjct: 12 NVVASTGIGQELDLQSVAMDLEGADYDPEQFPGLVYRTQEPKSAALIFRSGKIVCTGAKS 71
Query: 197 SNKI 200
++ +
Sbjct: 72 TDDV 75
>gi|435850312|ref|YP_007311898.1| TATA-box binding protein (TBP), component of TFIID and TFIIIB
[Methanomethylovorans hollandica DSM 15978]
gi|433660942|gb|AGB48368.1| TATA-box binding protein (TBP), component of TFIID and TFIIIB
[Methanomethylovorans hollandica DSM 15978]
Length = 183
Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 44/156 (28%), Positives = 74/156 (47%), Gaps = 6/156 (3%)
Query: 43 DIIINNVVCSFSVRCHLNLRQIALNGVNVEYRREN--GMVTMKLRKPYTTASIWSSGKIT 100
+I I NVV S + +L +I EY ++ G+V ++ +P +++SGK+
Sbjct: 5 NIKIENVVASTKLADEFDLTKIEAEFEGAEYNKQKFPGLV-YRVSEPKAAFLVFTSGKVV 63
Query: 101 CTGATSEDQSKIAARRYARCLQRLGFKA-RFTNFRVVNVLGTCSMPFAIRI--LQFSEKH 157
CTGA + A+ L +G K + V N++ + + + + +
Sbjct: 64 CTGAKNVADVHTVISNMAKKLNEIGIKTIKEPEITVQNIVASADLHAVLNLNAIAIGLGL 123
Query: 158 RAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTA 193
EYEPE PG+ YRI +PK + IFS+G + VT
Sbjct: 124 ENIEYEPEQFPGLVYRIDKPKVVVLIFSSGKLVVTG 159
Score = 43.5 bits (101), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 16/65 (24%), Positives = 33/65 (50%)
Query: 132 NFRVVNVLGTCSMPFAIRILQFSEKHRAAEYEPELHPGVTYRITRPKATLKIFSTGGITV 191
N ++ NV+ + + + + + AEY + PG+ YR++ PKA +F++G +
Sbjct: 5 NIKIENVVASTKLADEFDLTKIEAEFEGAEYNKQKFPGLVYRVSEPKAAFLVFTSGKVVC 64
Query: 192 TACND 196
T +
Sbjct: 65 TGAKN 69
Score = 39.3 bits (90), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 44/90 (48%), Gaps = 5/90 (5%)
Query: 41 EVDIIINNVVCSFSVRCHLNLRQIALN-GV-NVEYRREN--GMVTMKLRKPYTTASIWSS 96
E +I + N+V S + LNL IA+ G+ N+EY E G+V ++ KP I+SS
Sbjct: 94 EPEITVQNIVASADLHAVLNLNAIAIGLGLENIEYEPEQFPGLV-YRIDKPKVVVLIFSS 152
Query: 97 GKITCTGATSEDQSKIAARRYARCLQRLGF 126
GK+ TG + + + L +G
Sbjct: 153 GKLVVTGGKTPENCAEGVEVVKQQLDSMGL 182
>gi|449067334|ref|YP_007434416.1| transcription factor [Sulfolobus acidocaldarius N8]
gi|449069604|ref|YP_007436685.1| transcription factor [Sulfolobus acidocaldarius Ron12/I]
gi|449035842|gb|AGE71268.1| transcription factor [Sulfolobus acidocaldarius N8]
gi|449038112|gb|AGE73537.1| transcription factor [Sulfolobus acidocaldarius Ron12/I]
Length = 177
Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 70/134 (52%), Gaps = 4/134 (2%)
Query: 70 NVEYRREN--GMVTMKLRKPYTTASIWSSGKITCTGATSEDQSKIAARRYARCLQRLGFK 127
NVEY + G++ +L P T+ I+ SGK+ TGA S D+ A +R + L++ G +
Sbjct: 18 NVEYDPDQFPGLI-FRLESPKITSLIFKSGKMVVTGAKSTDELIKAVKRIIKTLKKYGMQ 76
Query: 128 ARFT-NFRVVNVLGTCSMPFAIRILQFSEKHRAAEYEPELHPGVTYRITRPKATLKIFST 186
++ N++ + ++ + + + + YEPE PG+ YR+ P+ L IFS+
Sbjct: 77 LTGKPKIQIQNIVASANLHVIVNLDKAAFLLENNMYEPEQFPGLIYRMDEPRVVLLIFSS 136
Query: 187 GGITVTACNDSNKI 200
G + +T +++
Sbjct: 137 GKMVITGAKREDEV 150
>gi|329766561|ref|ZP_08258104.1| TATA-box binding family protein [Candidatus Nitrosoarchaeum limnia
SFB1]
gi|393796800|ref|ZP_10380164.1| TATA-box binding family protein [Candidatus Nitrosoarchaeum limnia
BG20]
gi|329136816|gb|EGG41109.1| TATA-box binding family protein [Candidatus Nitrosoarchaeum limnia
SFB1]
Length = 187
Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 45/160 (28%), Positives = 80/160 (50%), Gaps = 8/160 (5%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYRREN--GMVTMKLRKPYTTASIWSSGKITCTG 103
+ NVV S SV ++L +I + EY E G+V +L+ P T I+ +GK+ CTG
Sbjct: 10 VENVVASASVDQKIDLNEITEKFPDTEYHPEQFPGLV-FRLQNPRTATLIFRTGKMVCTG 68
Query: 104 ATSEDQSKIAARRYARCLQRLGFKARFTNFRVV---NVLGTCSMPFAIRILQFSEKHRAA 160
A SED + A + L++ K + N V+ N++ ++ I + + + +
Sbjct: 69 AKSEDMAIKAVNTVVQKLRK--GKIKIKNDAVITVQNIVAAINLGGKIHLEKAARTLPRS 126
Query: 161 EYEPELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
YEPE PG+ +R+ PK + +F++G + T + +
Sbjct: 127 MYEPEQFPGLIHRMLDPKTVILLFASGKLVCTGAKKESDV 166
>gi|295862183|gb|ADG54816.1| CG18009 [Drosophila santomea]
gi|295862185|gb|ADG54817.1| CG18009 [Drosophila santomea]
Length = 240
Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 33/68 (48%), Positives = 44/68 (64%), Gaps = 1/68 (1%)
Query: 8 TTHSSHSEQEPPPTQTVVPIQNHAPPQPPAHD-PEVDIIINNVVCSFSVRCHLNLRQIAL 66
+++++ S + P + + N A + D PE+DI+INNVVCSFSV CHL LR IAL
Sbjct: 173 SSNNAKSIGDQQPENQPLALANAANDGNASDDEPELDIVINNVVCSFSVGCHLKLRDIAL 232
Query: 67 NGVNVEYR 74
G NVEYR
Sbjct: 233 QGSNVEYR 240
>gi|295862143|gb|ADG54796.1| CG18009 [Drosophila santomea]
gi|295862155|gb|ADG54802.1| CG18009 [Drosophila santomea]
Length = 240
Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 33/68 (48%), Positives = 44/68 (64%), Gaps = 1/68 (1%)
Query: 8 TTHSSHSEQEPPPTQTVVPIQNHAPPQPPAHD-PEVDIIINNVVCSFSVRCHLNLRQIAL 66
+++++ S + P + + N A + D PE+DI+INNVVCSFSV CHL LR IAL
Sbjct: 173 SSNNAKSIGDQQPENQPLALANAANDGNASDDEPELDIVINNVVCSFSVGCHLKLRDIAL 232
Query: 67 NGVNVEYR 74
G NVEYR
Sbjct: 233 QGSNVEYR 240
>gi|295862139|gb|ADG54794.1| CG18009 [Drosophila santomea]
gi|295862141|gb|ADG54795.1| CG18009 [Drosophila santomea]
gi|295862145|gb|ADG54797.1| CG18009 [Drosophila santomea]
gi|295862147|gb|ADG54798.1| CG18009 [Drosophila santomea]
gi|295862149|gb|ADG54799.1| CG18009 [Drosophila santomea]
gi|295862151|gb|ADG54800.1| CG18009 [Drosophila santomea]
gi|295862153|gb|ADG54801.1| CG18009 [Drosophila santomea]
gi|295862157|gb|ADG54803.1| CG18009 [Drosophila santomea]
gi|295862159|gb|ADG54804.1| CG18009 [Drosophila santomea]
gi|295862161|gb|ADG54805.1| CG18009 [Drosophila santomea]
gi|295862163|gb|ADG54806.1| CG18009 [Drosophila santomea]
gi|295862165|gb|ADG54807.1| CG18009 [Drosophila santomea]
gi|295862167|gb|ADG54808.1| CG18009 [Drosophila santomea]
gi|295862169|gb|ADG54809.1| CG18009 [Drosophila santomea]
gi|295862171|gb|ADG54810.1| CG18009 [Drosophila santomea]
gi|295862173|gb|ADG54811.1| CG18009 [Drosophila santomea]
gi|295862175|gb|ADG54812.1| CG18009 [Drosophila santomea]
gi|295862177|gb|ADG54813.1| CG18009 [Drosophila santomea]
gi|295862179|gb|ADG54814.1| CG18009 [Drosophila santomea]
gi|295862181|gb|ADG54815.1| CG18009 [Drosophila santomea]
Length = 240
Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 33/68 (48%), Positives = 44/68 (64%), Gaps = 1/68 (1%)
Query: 8 TTHSSHSEQEPPPTQTVVPIQNHAPPQPPAHD-PEVDIIINNVVCSFSVRCHLNLRQIAL 66
+++++ S + P + + N A + D PE+DI+INNVVCSFSV CHL LR IAL
Sbjct: 173 SSNNAKSIGDQQPENQPLALANAANDGNASDDEPELDIVINNVVCSFSVGCHLKLRDIAL 232
Query: 67 NGVNVEYR 74
G NVEYR
Sbjct: 233 QGSNVEYR 240
>gi|70607094|ref|YP_255964.1| transcription factor [Sulfolobus acidocaldarius DSM 639]
gi|68567742|gb|AAY80671.1| TATA-binding protein [Sulfolobus acidocaldarius DSM 639]
Length = 166
Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 70/134 (52%), Gaps = 4/134 (2%)
Query: 70 NVEYRREN--GMVTMKLRKPYTTASIWSSGKITCTGATSEDQSKIAARRYARCLQRLGFK 127
NVEY + G++ +L P T+ I+ SGK+ TGA S D+ A +R + L++ G +
Sbjct: 7 NVEYDPDQFPGLI-FRLESPKITSLIFKSGKMVVTGAKSTDELIKAVKRIIKTLKKYGMQ 65
Query: 128 ARFT-NFRVVNVLGTCSMPFAIRILQFSEKHRAAEYEPELHPGVTYRITRPKATLKIFST 186
++ N++ + ++ + + + + YEPE PG+ YR+ P+ L IFS+
Sbjct: 66 LTGKPKIQIQNIVASANLHVIVNLDKAAFLLENNMYEPEQFPGLIYRMDEPRVVLLIFSS 125
Query: 187 GGITVTACNDSNKI 200
G + +T +++
Sbjct: 126 GKMVITGAKREDEV 139
>gi|448503146|ref|ZP_21612913.1| transcription factor [Halorubrum coriense DSM 10284]
gi|445693155|gb|ELZ45315.1| transcription factor [Halorubrum coriense DSM 10284]
Length = 186
Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 46/161 (28%), Positives = 75/161 (46%), Gaps = 9/161 (5%)
Query: 39 DPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYRREN--GMVTMKLRKPYTTASIWSS 96
DP+ I + NVV S + L+L+ +A++ +Y E G+V + P + A I+ S
Sbjct: 4 DPKETITVENVVASTGIGQELDLQSVAMDLEGADYDPEQFPGLV-YRTTDPKSAALIFRS 62
Query: 97 GKITCTGATSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRI----LQ 152
GKI CTGA S D + L+ L V N++ + + ++ + +
Sbjct: 63 GKIVCTGANSIDAVYESLDIVFEELRALQIPIEDPEVTVQNIVTSADLGESLNLNAIAIG 122
Query: 153 FSEKHRAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTA 193
+H EYEPE PG+ YR+ P +F +G + VT
Sbjct: 123 LGLEH--IEYEPEQFPGLVYRLDEPDVVALLFGSGKVVVTG 161
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 48/97 (49%), Gaps = 7/97 (7%)
Query: 34 QPPAHDPEVDIIINNVVCSFSVRCHLNLRQIALN-GVN-VEYRREN--GMVTMKLRKPYT 89
Q P DPEV + N+V S + LNL IA+ G+ +EY E G+V +L +P
Sbjct: 91 QIPIEDPEV--TVQNIVTSADLGESLNLNAIAIGLGLEHIEYEPEQFPGLV-YRLDEPDV 147
Query: 90 TASIWSSGKITCTGATSEDQSKIAARRYARCLQRLGF 126
A ++ SGK+ TG TS + + A L LG
Sbjct: 148 VALLFGSGKVVVTGGTSPEDAAAAVDVIVEELDGLGL 184
Score = 42.4 bits (98), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 33/66 (50%)
Query: 135 VVNVLGTCSMPFAIRILQFSEKHRAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTAC 194
V NV+ + + + + + A+Y+PE PG+ YR T PK+ IF +G I T
Sbjct: 11 VENVVASTGIGQELDLQSVAMDLEGADYDPEQFPGLVYRTTDPKSAALIFRSGKIVCTGA 70
Query: 195 NDSNKI 200
N + +
Sbjct: 71 NSIDAV 76
>gi|448335606|ref|ZP_21524747.1| transcription factor [Natrinema pellirubrum DSM 15624]
gi|445616584|gb|ELY70205.1| transcription factor [Natrinema pellirubrum DSM 15624]
Length = 186
Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 46/160 (28%), Positives = 75/160 (46%), Gaps = 6/160 (3%)
Query: 39 DPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYRREN--GMVTMKLRKPYTTASIWSS 96
DP+ I I NVV S + L+L+ +A++ +Y E G+V + + P + A I+ S
Sbjct: 3 DPKDTINIENVVASTGIGQELDLQSVAMDLEGADYDPEQFPGLV-YRSQNPKSAALIFRS 61
Query: 97 GKITCTGATSEDQSKIAARRYARCLQRLGFKARFT-NFRVVNVLGTCSMP--FAIRILQF 153
GKI CTGA S D + R L+ L + V N++ + + + +
Sbjct: 62 GKIVCTGAKSTDDVHESLRIVFDKLRELQIQVNEDPEIVVQNIVTSADLGRNLNLNAIAI 121
Query: 154 SEKHRAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTA 193
EYEPE PG+ YR+ P+ +F +G + +T
Sbjct: 122 GLGLENIEYEPEQFPGLVYRLDDPEVVALLFGSGKLVITG 161
Score = 46.2 bits (108), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 49/93 (52%), Gaps = 7/93 (7%)
Query: 38 HDPEVDIIINNVVCSFSVRCHLNLRQIALN-GV-NVEYRREN--GMVTMKLRKPYTTASI 93
DPE I++ N+V S + +LNL IA+ G+ N+EY E G+V +L P A +
Sbjct: 95 EDPE--IVVQNIVTSADLGRNLNLNAIAIGLGLENIEYEPEQFPGLV-YRLDDPEVVALL 151
Query: 94 WSSGKITCTGATSEDQSKIAARRYARCLQRLGF 126
+ SGK+ TG + ++ A + L+ LG
Sbjct: 152 FGSGKLVITGGKKPEDAEHAVDKIVSRLEDLGL 184
Score = 38.9 bits (89), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 31/64 (48%)
Query: 137 NVLGTCSMPFAIRILQFSEKHRAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTACND 196
NV+ + + + + + A+Y+PE PG+ YR PK+ IF +G I T
Sbjct: 12 NVVASTGIGQELDLQSVAMDLEGADYDPEQFPGLVYRSQNPKSAALIFRSGKIVCTGAKS 71
Query: 197 SNKI 200
++ +
Sbjct: 72 TDDV 75
>gi|298675995|ref|YP_003727745.1| TATA-box-binding family protein [Methanohalobium evestigatum
Z-7303]
gi|298288983|gb|ADI74949.1| TATA-box binding family protein [Methanohalobium evestigatum
Z-7303]
Length = 187
Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 44/161 (27%), Positives = 76/161 (47%), Gaps = 6/161 (3%)
Query: 38 HDPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYRREN--GMVTMKLRKPYTTASIWS 95
+ + +I I NVV S + +L +I EY ++ G+V ++ P +++
Sbjct: 4 YKEDYNIKIENVVASTKLAEEFDLTKIEAEFEGAEYNKQKFPGLV-YRVSNPKAAFLVFT 62
Query: 96 SGKITCTGATSEDQSKIAARRYARCLQRLGFKA-RFTNFRVVNVLGTCSMPFAIRI--LQ 152
SGK+ CTGA + D + A+ L +G + + V N++ + + + + +
Sbjct: 63 SGKVVCTGAKNVDDVHVVIGNMAKKLNDIGIETIKDPVITVQNIVASADLHAVLNLNAIA 122
Query: 153 FSEKHRAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTA 193
EYEPE PG+ YRI PK + IFS+G + VT
Sbjct: 123 IGLGLENIEYEPEQFPGLVYRIDDPKVVVLIFSSGKLVVTG 163
Score = 45.1 bits (105), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 18/73 (24%), Positives = 37/73 (50%)
Query: 132 NFRVVNVLGTCSMPFAIRILQFSEKHRAAEYEPELHPGVTYRITRPKATLKIFSTGGITV 191
N ++ NV+ + + + + + AEY + PG+ YR++ PKA +F++G +
Sbjct: 9 NIKIENVVASTKLAEEFDLTKIEAEFEGAEYNKQKFPGLVYRVSNPKAAFLVFTSGKVVC 68
Query: 192 TACNDSNKIPVQI 204
T + + + V I
Sbjct: 69 TGAKNVDDVHVVI 81
Score = 38.5 bits (88), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 41/87 (47%), Gaps = 5/87 (5%)
Query: 44 IIINNVVCSFSVRCHLNLRQIALN-GV-NVEYRREN--GMVTMKLRKPYTTASIWSSGKI 99
I + N+V S + LNL IA+ G+ N+EY E G+V ++ P I+SSGK+
Sbjct: 101 ITVQNIVASADLHAVLNLNAIAIGLGLENIEYEPEQFPGLV-YRIDDPKVVVLIFSSGKL 159
Query: 100 TCTGATSEDQSKIAARRYARCLQRLGF 126
TG S D + L +G
Sbjct: 160 VVTGGKSPDHCERGVEVVRNQLDGMGL 186
>gi|399576129|ref|ZP_10769886.1| transcription factor [Halogranum salarium B-1]
gi|399238840|gb|EJN59767.1| transcription factor [Halogranum salarium B-1]
Length = 186
Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 46/160 (28%), Positives = 73/160 (45%), Gaps = 6/160 (3%)
Query: 39 DPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYRREN--GMVTMKLRKPYTTASIWSS 96
DP I I NVV S + L+L+ +A++ +Y E G+V + + P + A I+ S
Sbjct: 3 DPTDTINIENVVASTGIGQELDLQSVAMDLEGADYDPEQFPGLV-YRTQNPKSAALIFRS 61
Query: 97 GKITCTGATSEDQSKIAARRYARCLQRLGFKARFT-NFRVVNVLGTCSMP--FAIRILQF 153
GKI CTGA S D + L+ L + V N++ + + + +
Sbjct: 62 GKIVCTGAKSTDDVHESLNIVFDKLRELKIQVEDDPEITVQNIVTSADLGKNLNLNAIAI 121
Query: 154 SEKHRAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTA 193
EYEPE PG+ YR+ PK +F +G + +T
Sbjct: 122 GLGLENIEYEPEQFPGLVYRLDEPKVVALLFGSGKLVITG 161
Score = 44.7 bits (104), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 47/93 (50%), Gaps = 7/93 (7%)
Query: 38 HDPEVDIIINNVVCSFSVRCHLNLRQIALN-GV-NVEYRREN--GMVTMKLRKPYTTASI 93
DPE I + N+V S + +LNL IA+ G+ N+EY E G+V +L +P A +
Sbjct: 95 DDPE--ITVQNIVTSADLGKNLNLNAIAIGLGLENIEYEPEQFPGLV-YRLDEPKVVALL 151
Query: 94 WSSGKITCTGATSEDQSKIAARRYARCLQRLGF 126
+ SGK+ TG + +K A L LG
Sbjct: 152 FGSGKLVITGGKKPEDAKHAVEVITERLSELGL 184
Score = 39.3 bits (90), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 17/68 (25%), Positives = 32/68 (47%)
Query: 133 FRVVNVLGTCSMPFAIRILQFSEKHRAAEYEPELHPGVTYRITRPKATLKIFSTGGITVT 192
+ NV+ + + + + + A+Y+PE PG+ YR PK+ IF +G I T
Sbjct: 8 INIENVVASTGIGQELDLQSVAMDLEGADYDPEQFPGLVYRTQNPKSAALIFRSGKIVCT 67
Query: 193 ACNDSNKI 200
++ +
Sbjct: 68 GAKSTDDV 75
>gi|379335155|gb|AFD03144.1| 2-alkenal reductase [uncultured bacterium W5-77b]
Length = 186
Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 81/153 (52%), Gaps = 4/153 (2%)
Query: 44 IIINNVVCSFSVRCHLNLRQIALNGVNVEYRREN--GMVTMKLRKPYTTASIWSSGKITC 101
I I NVV S ++ L+L+ I + +VE+ + G V +L+ P T ++ +GK+ C
Sbjct: 8 ISIENVVASATIDQKLDLKDITMKFPDVEWHPDMFPGAV-FRLKNPKTATLLFRTGKMVC 66
Query: 102 TGATSEDQSKIAARRYARCLQRLGFK-ARFTNFRVVNVLGTCSMPFAIRILQFSEKHRAA 160
TG+ SE+ ++ A + + L++ K + + N++ + ++ + + Q + +
Sbjct: 67 TGSKSEEIARKAVKTVVQELRKGKIKIKKEATVTIQNIVASINLGGRVHLEQAARTLPRS 126
Query: 161 EYEPELHPGVTYRITRPKATLKIFSTGGITVTA 193
YEPE PG+ +R+ PK + IFS+G + T
Sbjct: 127 MYEPEQFPGLIHRVLDPKTVILIFSSGKLVCTG 159
>gi|68074137|ref|XP_678983.1| transcription initiation factor TFiid, TATA-binding protein
[Plasmodium berghei strain ANKA]
gi|56499609|emb|CAH98178.1| transcription initiation factor TFiid, TATA-binding protein,
putative [Plasmodium berghei]
Length = 252
Score = 67.0 bits (162), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 44/157 (28%), Positives = 84/157 (53%), Gaps = 10/157 (6%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYR--RENGMVTMKLRKPYTTASIWSSGKITCTG 103
I+N++ S ++ +NLR +A++ + EY + N ++ +++ P TA I+ SG+I TG
Sbjct: 76 IHNIISSANLDAEINLRLVAVSIKSAEYNPSKINTLI-IRINNPKCTALIFKSGRIMLTG 134
Query: 104 ATSEDQSKIAARRYARCLQRL-GFKARFTNFRVVNVLGTCSMPFAIRILQFSEKHRA-AE 161
S+ S ++ + ++ + R NF++ N++ + + +R+ + H+
Sbjct: 135 TKSKTDSIKGCKKIGKIIKIVTNQNIRLKNFKIENIIASANCNIPVRLEMLAHDHKEYCN 194
Query: 162 YEPELHPGVTYRITRPKATLK----IFSTGGITVTAC 194
YEPEL G+ YR +P + LK IF +G I +T C
Sbjct: 195 YEPELFAGLVYR-YKPASNLKSVILIFVSGKIIITGC 230
>gi|433591131|ref|YP_007280627.1| TATA-box binding protein (TBP), component of TFIID and TFIIIB
[Natrinema pellirubrum DSM 15624]
gi|448334667|ref|ZP_21523835.1| transcription factor [Natrinema pellirubrum DSM 15624]
gi|433305911|gb|AGB31723.1| TATA-box binding protein (TBP), component of TFIID and TFIIIB
[Natrinema pellirubrum DSM 15624]
gi|445619396|gb|ELY72936.1| transcription factor [Natrinema pellirubrum DSM 15624]
Length = 186
Score = 67.0 bits (162), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 47/160 (29%), Positives = 75/160 (46%), Gaps = 6/160 (3%)
Query: 39 DPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYRREN--GMVTMKLRKPYTTASIWSS 96
DP+ I I NVV S S+ L L +A++ +Y E G+V + + P + A I+ S
Sbjct: 3 DPKESINIENVVASTSIGQELELESVAMDLKGADYDPEQFPGLV-YRTQNPKSAALIFRS 61
Query: 97 GKITCTGATSEDQSKIAARRYARCLQRLGFKARFT-NFRVVNVLGTCSMPFAIRI--LQF 153
GKI CTGA S D + L+ L + V N++ + + + + +
Sbjct: 62 GKIVCTGAKSTDAVHESLHIVFDKLRELQIQVEKNPEIIVQNIVSSADLGRTLNLNAIAI 121
Query: 154 SEKHRAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTA 193
EYEPE PG+ YR+ +P+ +F +G + VT
Sbjct: 122 GLGLENIEYEPEQFPGLVYRLDQPEVVALLFGSGKLVVTG 161
Score = 46.6 bits (109), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 46/88 (52%), Gaps = 5/88 (5%)
Query: 43 DIIINNVVCSFSVRCHLNLRQIALN-GV-NVEYRREN--GMVTMKLRKPYTTASIWSSGK 98
+II+ N+V S + LNL IA+ G+ N+EY E G+V +L +P A ++ SGK
Sbjct: 98 EIIVQNIVSSADLGRTLNLNAIAIGLGLENIEYEPEQFPGLV-YRLDQPEVVALLFGSGK 156
Query: 99 ITCTGATSEDQSKIAARRYARCLQRLGF 126
+ TG D +K A L+ LG
Sbjct: 157 LVVTGGKKGDDAKQAVDVITTRLEELGL 184
Score = 41.6 bits (96), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 35/69 (50%)
Query: 132 NFRVVNVLGTCSMPFAIRILQFSEKHRAAEYEPELHPGVTYRITRPKATLKIFSTGGITV 191
+ + NV+ + S+ + + + + A+Y+PE PG+ YR PK+ IF +G I
Sbjct: 7 SINIENVVASTSIGQELELESVAMDLKGADYDPEQFPGLVYRTQNPKSAALIFRSGKIVC 66
Query: 192 TACNDSNKI 200
T ++ +
Sbjct: 67 TGAKSTDAV 75
>gi|284161184|ref|YP_003399807.1| TATA-box binding family protein [Archaeoglobus profundus DSM 5631]
gi|284011181|gb|ADB57134.1| TATA-box binding family protein [Archaeoglobus profundus DSM 5631]
Length = 184
Score = 67.0 bits (162), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 41/155 (26%), Positives = 78/155 (50%), Gaps = 6/155 (3%)
Query: 44 IIINNVVCSFSVRCHLNLRQIALNGVNVEYRREN--GMVTMKLRKPYTTASIWSSGKITC 101
I I NVV S + +++L +IA + +Y+ + G+V ++ ++P A I+ SGK+ C
Sbjct: 7 IKIENVVASTQIGENIDLNKIAREIPDADYKPKQFPGLV-LRTKEPKAAALIFRSGKVVC 65
Query: 102 TGATSEDQSKIAARRYARCLQRLGFKA-RFTNFRVVNVLGTCSM--PFAIRILQFSEKHR 158
TG+ S + ++ ++ + + LG +V N++ + + + +
Sbjct: 66 TGSKSVEDARRVVKQIVKIVGSLGIPVIEEPEVKVQNIVASADLGTDLNLNAIAIGLGLE 125
Query: 159 AAEYEPELHPGVTYRITRPKATLKIFSTGGITVTA 193
EYEPE PG+ YR+ P+ + IF +G + VT
Sbjct: 126 NVEYEPEQFPGLVYRLRDPRVVVLIFGSGKMVVTG 160
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/96 (36%), Positives = 50/96 (52%), Gaps = 7/96 (7%)
Query: 35 PPAHDPEVDIIINNVVCSFSVRCHLNLRQIALN-GV-NVEYRREN--GMVTMKLRKPYTT 90
P +PEV + N+V S + LNL IA+ G+ NVEY E G+V +LR P
Sbjct: 91 PVIEEPEVKV--QNIVASADLGTDLNLNAIAIGLGLENVEYEPEQFPGLV-YRLRDPRVV 147
Query: 91 ASIWSSGKITCTGATSEDQSKIAARRYARCLQRLGF 126
I+ SGK+ TG + D ++ A + A L+ LG
Sbjct: 148 VLIFGSGKMVVTGGKTPDDARRAVEKIAEELESLGL 183
>gi|294496460|ref|YP_003542953.1| TATA binding protein of transcription factor TFIID
[Methanohalophilus mahii DSM 5219]
gi|292667459|gb|ADE37308.1| TATA binding protein of transcription factor TFIID
[Methanohalophilus mahii DSM 5219]
Length = 183
Score = 67.0 bits (162), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 44/158 (27%), Positives = 73/158 (46%), Gaps = 6/158 (3%)
Query: 41 EVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYRREN--GMVTMKLRKPYTTASIWSSGK 98
+ +I I NVV S + +L +I EY ++ G+V ++ P +++SGK
Sbjct: 3 DYNIKIENVVASTKLAEEFDLTKIEAEFEGAEYNKQKFPGLV-YRVSNPKAAFLVFTSGK 61
Query: 99 ITCTGATSEDQSKIAARRYARCLQRLGFKARFT-NFRVVNVLGTCSMPFAIRI--LQFSE 155
+ CTGA + D A+ L +G + V N++ + + + + +
Sbjct: 62 VVCTGAKNVDDVHTVIADMAKKLNGIGIDTLEKPDITVQNIVASADLKAVLNLNAIAIGL 121
Query: 156 KHRAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTA 193
EYEPE PG+ YRI PK + IFS+G + VT
Sbjct: 122 GLENIEYEPEQFPGLVYRIDEPKVVVLIFSSGKLVVTG 159
Score = 43.9 bits (102), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 16/69 (23%), Positives = 35/69 (50%)
Query: 132 NFRVVNVLGTCSMPFAIRILQFSEKHRAAEYEPELHPGVTYRITRPKATLKIFSTGGITV 191
N ++ NV+ + + + + + AEY + PG+ YR++ PKA +F++G +
Sbjct: 5 NIKIENVVASTKLAEEFDLTKIEAEFEGAEYNKQKFPGLVYRVSNPKAAFLVFTSGKVVC 64
Query: 192 TACNDSNKI 200
T + + +
Sbjct: 65 TGAKNVDDV 73
Score = 42.4 bits (98), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 45/88 (51%), Gaps = 5/88 (5%)
Query: 43 DIIINNVVCSFSVRCHLNLRQIALN-GV-NVEYRREN--GMVTMKLRKPYTTASIWSSGK 98
DI + N+V S ++ LNL IA+ G+ N+EY E G+V ++ +P I+SSGK
Sbjct: 96 DITVQNIVASADLKAVLNLNAIAIGLGLENIEYEPEQFPGLV-YRIDEPKVVVLIFSSGK 154
Query: 99 ITCTGATSEDQSKIAARRYARCLQRLGF 126
+ TG S + + + L +G
Sbjct: 155 LVVTGGKSPENCEEGVEVVRQQLDNMGL 182
>gi|448316921|ref|ZP_21506499.1| transcription factor [Natronococcus jeotgali DSM 18795]
gi|445606151|gb|ELY60056.1| transcription factor [Natronococcus jeotgali DSM 18795]
Length = 186
Score = 67.0 bits (162), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 42/159 (26%), Positives = 73/159 (45%), Gaps = 5/159 (3%)
Query: 39 DPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYRREN--GMVTMKLRKPYTTASIWSS 96
DP I NVV S +L+ +A + N +Y G+V ++ P + I+ +
Sbjct: 3 DPTDTITTENVVASGDTGREFDLQALADDLNNAQYDPNTFPGIV-YRMDNPQSAGLIFHT 61
Query: 97 GKITCTGATSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRI--LQFS 154
GKI CTGA S + +A L++LG F + N++ + + ++ + +
Sbjct: 62 GKIVCTGAKSVEDINKSAETIFNALKQLGIAVEENPFTIQNIVSSADLGCSLNLNAVAIG 121
Query: 155 EKHRAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTA 193
EYEPE PG+ YR+ +P + +F +G +T
Sbjct: 122 LGLGQIEYEPEQFPGLVYRLDKPDVVVLLFGSGKAVITG 160
Score = 40.8 bits (94), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 41/88 (46%), Gaps = 5/88 (5%)
Query: 46 INNVVCSFSVRCHLNLRQIALN-GVN-VEYRREN--GMVTMKLRKPYTTASIWSSGKITC 101
I N+V S + C LNL +A+ G+ +EY E G+V +L KP ++ SGK
Sbjct: 100 IQNIVSSADLGCSLNLNAVAIGLGLGQIEYEPEQFPGLV-YRLDKPDVVVLLFGSGKAVI 158
Query: 102 TGATSEDQSKIAARRYARCLQRLGFKAR 129
TG T + A L+ +G R
Sbjct: 159 TGGTEIQDAATAVNVIISKLENVGLMNR 186
>gi|2833470|sp|Q56253.1|TBP_THECE RecName: Full=TATA-box-binding protein; AltName: Full=Box A-binding
protein; Short=BAP; AltName: Full=TATA sequence-binding
protein; Short=TBP; AltName: Full=TATA-box factor
gi|498255|gb|AAA73412.1| TATA-binding protein [Thermococcus celer]
Length = 189
Score = 67.0 bits (162), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 47/157 (29%), Positives = 80/157 (50%), Gaps = 8/157 (5%)
Query: 42 VDIIINNVVCSFSVRCHLNLRQIALNGVNVEYRREN--GMVTMKLRKPYTTASIWSSGKI 99
V + I N+V S + LNL ++ + +Y E G++ + +P I+SSGK+
Sbjct: 4 VKLRIENIVASVDLFTQLNLERVIEMCPHSKYNPEEFPGIIC-RFDEPKVALLIFSSGKL 62
Query: 100 TCTGATSEDQSKIAARRYARCLQRLGFK-ARFTNFRVVNVL--GTCSMPFAIRILQFSEK 156
TGA S + + A + + L+++G K +R + N++ G M F + + S
Sbjct: 63 VVTGAKSVEDIERAVNKLIQMLKKIGAKFSRAPQIDIQNMVFSGDIGMEFNLDAVALSLP 122
Query: 157 HRAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTA 193
+ EYEPE PGV YR+ P+A + +FS+G I +
Sbjct: 123 N--CEYEPEQFPGVIYRVKEPRAVILLFSSGKIVCSG 157
Score = 50.1 bits (118), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 47/85 (55%), Gaps = 3/85 (3%)
Query: 40 PEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYRRENG-MVTMKLRKPYTTASIWSSGK 98
P++DI N+V S + NL +AL+ N EY E V ++++P ++SSGK
Sbjct: 95 PQIDI--QNMVFSGDIGMEFNLDAVALSLPNCEYEPEQFPGVIYRVKEPRAVILLFSSGK 152
Query: 99 ITCTGATSEDQSKIAARRYARCLQR 123
I C+GA SE + A R+ R L++
Sbjct: 153 IVCSGAKSEHDAWEAVRKLLRELEK 177
Score = 38.5 bits (88), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 32/70 (45%)
Query: 131 TNFRVVNVLGTCSMPFAIRILQFSEKHRAAEYEPELHPGVTYRITRPKATLKIFSTGGIT 190
R+ N++ + + + + + E ++Y PE PG+ R PK L IFS+G +
Sbjct: 4 VKLRIENIVASVDLFTQLNLERVIEMCPHSKYNPEEFPGIICRFDEPKVALLIFSSGKLV 63
Query: 191 VTACNDSNKI 200
VT I
Sbjct: 64 VTGAKSVEDI 73
>gi|242398131|ref|YP_002993555.1| Transcription factor TFIID [Thermococcus sibiricus MM 739]
gi|259517220|sp|C6A0R1.1|TBP_THESM RecName: Full=TATA-box-binding protein; AltName: Full=Box A-binding
protein; Short=BAP; AltName: Full=TATA sequence-binding
protein; Short=TBP; AltName: Full=TATA-box factor
gi|242264524|gb|ACS89206.1| Transcription factor TFIID [Thermococcus sibiricus MM 739]
Length = 185
Score = 67.0 bits (162), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 46/157 (29%), Positives = 77/157 (49%), Gaps = 8/157 (5%)
Query: 42 VDIIINNVVCSFSVRCHLNLRQIALNGVNVEYRREN--GMVTMKLRKPYTTASIWSSGKI 99
V++ I N+V S + L+L ++ + +Y E G++ + +P ++SSGK+
Sbjct: 4 VELRIENIVASVDLFASLDLEKVIEICPHSKYNPEEFPGIIC-RFDEPKVALLVFSSGKL 62
Query: 100 TCTGATSEDQSKIAARRYARCLQRLGFK-ARFTNFRVVNVL--GTCSMPFAIRILQFSEK 156
TGA S D + A + L ++G K R + N++ G M F + +
Sbjct: 63 VVTGAKSVDDIQAAVSKLVEMLSKIGTKFGRAPEIDIQNMVFSGDLKMEFNLDAVALVLP 122
Query: 157 HRAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTA 193
+ EYEPE PGV YR+ PKA + +FS+G I +
Sbjct: 123 N--CEYEPEQFPGVIYRVKDPKAVILLFSSGKIVCSG 157
Score = 49.7 bits (117), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 45/88 (51%), Gaps = 3/88 (3%)
Query: 40 PEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYRRENG-MVTMKLRKPYTTASIWSSGK 98
PE+DI N+V S ++ NL +AL N EY E V +++ P ++SSGK
Sbjct: 95 PEIDI--QNMVFSGDLKMEFNLDAVALVLPNCEYEPEQFPGVIYRVKDPKAVILLFSSGK 152
Query: 99 ITCTGATSEDQSKIAARRYARCLQRLGF 126
I C+GA SE + A ++ L + G
Sbjct: 153 IVCSGAKSEHDAWEAVKKLLHELDKYGL 180
Score = 39.7 bits (91), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 34/70 (48%)
Query: 131 TNFRVVNVLGTCSMPFAIRILQFSEKHRAAEYEPELHPGVTYRITRPKATLKIFSTGGIT 190
R+ N++ + + ++ + + E ++Y PE PG+ R PK L +FS+G +
Sbjct: 4 VELRIENIVASVDLFASLDLEKVIEICPHSKYNPEEFPGIICRFDEPKVALLVFSSGKLV 63
Query: 191 VTACNDSNKI 200
VT + I
Sbjct: 64 VTGAKSVDDI 73
>gi|10803661|ref|NP_046059.1| transcription factor [Halobacterium sp. NRC-1]
gi|169237306|ref|YP_001690512.1| TATA-binding transcription initiation factor [Halobacterium
salinarum R1]
gi|169237349|ref|YP_001690554.1| TATA-binding transcription initiation factor [Halobacterium
salinarum R1]
gi|14423947|sp|O52018.1|TBPD_HALSA RecName: Full=TATA-box-binding protein D; AltName: Full=Box
A-binding protein D; Short=BAP D; AltName: Full=TATA
sequence-binding protein D; Short=TBP D; AltName:
Full=TATA-box factor D
gi|2822392|gb|AAC82898.1| TbpD [Halobacterium sp. NRC-1]
gi|167728372|emb|CAP15175.1| TATA-binding transcription initiation factor [Halobacterium
salinarum R1]
gi|167728865|emb|CAP15756.1| TATA-binding transcription initiation factor [Halobacterium
salinarum R1]
Length = 186
Score = 67.0 bits (162), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 45/154 (29%), Positives = 66/154 (42%), Gaps = 4/154 (2%)
Query: 44 IIINNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCT 102
I I NVV S + L L Q+A + EY + V +L P + I+ SGK CT
Sbjct: 8 IQIENVVASTDLSQELALEQLATDLPGAEYNPGDFPGVIYRLDDPKSATLIFDSGKAVCT 67
Query: 103 GATSEDQSKIAARRYARCLQRLGFKARFTN-FRVVNVL--GTCSMPFAIRILQFSEKHRA 159
GA S D A L+ LG + V N++ G+ + +
Sbjct: 68 GAQSVDDVHDAISIVVEDLRDLGIDIPPSPPVHVQNIVCSGSLDQDLNLNAIAIGLGLED 127
Query: 160 AEYEPELHPGVTYRITRPKATLKIFSTGGITVTA 193
EYEPE PG+ YR+ P + +F +G + +T
Sbjct: 128 VEYEPEQFPGLVYRLNDPDVVVLLFGSGKLVITG 161
Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 48/99 (48%), Gaps = 12/99 (12%)
Query: 32 PPQPPAHDPEVDIIINNVVCSFSVRCHLNLRQIALN-GV-NVEYRREN--GMVTMKLRKP 87
PP PP H + N+VCS S+ LNL IA+ G+ +VEY E G+V +L P
Sbjct: 94 PPSPPVH-------VQNIVCSGSLDQDLNLNAIAIGLGLEDVEYEPEQFPGLV-YRLNDP 145
Query: 88 YTTASIWSSGKITCTGATSEDQSKIAARRYARCLQRLGF 126
++ SGK+ TG ++ D + A L LG
Sbjct: 146 DVVVLLFGSGKLVITGGSNPDDAHHALEIIHERLTDLGL 184
>gi|167043299|gb|ABZ08004.1| putative transcription factor TFIID (or TATA-binding protein, TBP)
[uncultured marine crenarchaeote HF4000_ANIW141M18]
Length = 186
Score = 66.6 bits (161), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 44/158 (27%), Positives = 77/158 (48%), Gaps = 4/158 (2%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYRREN--GMVTMKLRKPYTTASIWSSGKITCTG 103
I NVV S SV ++L+ + E+ + G+V +L+ P T I+ SGK+ CTG
Sbjct: 10 IENVVASASVDQAIDLKDVTKKFPETEWHPDQFPGLV-FRLKSPKTATLIFRSGKMVCTG 68
Query: 104 ATSEDQSKIAARRYARCLQRLGFKARFTN-FRVVNVLGTCSMPFAIRILQFSEKHRAAEY 162
SE + A R + L++ K + V N++ + S+ I + + + + Y
Sbjct: 69 GKSEAMAIKAVRTVVKQLRKGKIKIKKDAVITVQNIVASGSLGGKIHLEDAARRLPHSMY 128
Query: 163 EPELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
EPE PG+ +R+ PK L +F++G + T + +
Sbjct: 129 EPEQFPGLIHRMVDPKTVLLLFASGKLVCTGAKKESDV 166
>gi|88601869|ref|YP_502047.1| transcription factor [Methanospirillum hungatei JF-1]
gi|88187331|gb|ABD40328.1| TATA binding protein of transcription factor TFIID
[Methanospirillum hungatei JF-1]
Length = 186
Score = 66.6 bits (161), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 42/162 (25%), Positives = 80/162 (49%), Gaps = 6/162 (3%)
Query: 40 PEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYRREN--GMVTMKLRKPYTTASIWSSG 97
P+ + I N+V S + L+L QIA + + EY ++ G+V ++++ P A ++ SG
Sbjct: 5 PDTSLRIENIVASAKISESLDLPQIASSIKDAEYNKKRFPGVV-IRMQNPKIAALVFGSG 63
Query: 98 KITCTGATSEDQSKIAARRYARCLQRLGFK-ARFTNFRVVNVLGTCSMPFAIRILQFSEK 156
K+ TGA S + L+ L + A +++ N++ + + I + + +
Sbjct: 64 KVVLTGAKSVESLNKGLEILGDLLRSLNIEIASELTYKIQNIVTSADLGSGINLNKIAVG 123
Query: 157 HRAA--EYEPELHPGVTYRITRPKATLKIFSTGGITVTACND 196
EYEPE PG+ YR+ PK + +F +G + +T +
Sbjct: 124 FNLERIEYEPEQFPGLVYRLEDPKVVVLLFGSGKLIITGGKE 165
>gi|167045405|gb|ABZ10060.1| putative transcription factor TFIID (or TATA-binding protein, TBP)
[uncultured marine crenarchaeote HF4000_APKG10F15]
Length = 186
Score = 66.6 bits (161), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 44/158 (27%), Positives = 77/158 (48%), Gaps = 4/158 (2%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYRREN--GMVTMKLRKPYTTASIWSSGKITCTG 103
I NVV S SV ++L+ + E+ + G+V +L+ P T I+ SGK+ CTG
Sbjct: 10 IENVVASASVDQAIDLKDVTKKFPETEWHPDQFPGLV-FRLKSPKTATLIFRSGKMVCTG 68
Query: 104 ATSEDQSKIAARRYARCLQRLGFKARFTN-FRVVNVLGTCSMPFAIRILQFSEKHRAAEY 162
SE + A R + L++ K + V N++ + S+ I + + + + Y
Sbjct: 69 GKSEAMAIKAVRTVVKQLRKGKIKIKKDAVITVQNIVASGSLGGKIHLEDAARRLPRSMY 128
Query: 163 EPELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
EPE PG+ +R+ PK L +F++G + T + +
Sbjct: 129 EPEQFPGLIHRMVDPKTVLLLFASGKLVCTGAKKESDV 166
>gi|257052326|ref|YP_003130159.1| transcription factor [Halorhabdus utahensis DSM 12940]
gi|256691089|gb|ACV11426.1| TATA-box binding family protein [Halorhabdus utahensis DSM 12940]
Length = 186
Score = 66.6 bits (161), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 46/160 (28%), Positives = 75/160 (46%), Gaps = 6/160 (3%)
Query: 39 DPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYRREN--GMVTMKLRKPYTTASIWSS 96
DP+ I I NVV S + L+L+ +A++ +Y E G+V + ++P + A I+ S
Sbjct: 3 DPKETINIENVVASTGIGQELDLQSVAMDLEGADYDPEQFPGLV-YRTQEPKSAALIFRS 61
Query: 97 GKITCTGATSEDQSKIAARRYARCLQRLGFKARFT-NFRVVNVLGTCSMP--FAIRILQF 153
GKI CTGA S D + R L+ L + V N++ + + + +
Sbjct: 62 GKIVCTGAKSTDDVHESLRIVFGKLRDLEIQVDEDPEIVVQNIVTSADLGRNLNLNAIAI 121
Query: 154 SEKHRAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTA 193
EYEPE PG+ YR+ P +F +G + +T
Sbjct: 122 GLGLENIEYEPEQFPGLVYRLDDPDVVALLFGSGKLVITG 161
Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 49/93 (52%), Gaps = 7/93 (7%)
Query: 38 HDPEVDIIINNVVCSFSVRCHLNLRQIALN-GV-NVEYRREN--GMVTMKLRKPYTTASI 93
DPE I++ N+V S + +LNL IA+ G+ N+EY E G+V +L P A +
Sbjct: 95 EDPE--IVVQNIVTSADLGRNLNLNAIAIGLGLENIEYEPEQFPGLV-YRLDDPDVVALL 151
Query: 94 WSSGKITCTGATSEDQSKIAARRYARCLQRLGF 126
+ SGK+ TG D +K A + L+ LG
Sbjct: 152 FGSGKLVITGGKEPDDAKKAVDKIVSRLEELGL 184
Score = 39.7 bits (91), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 31/64 (48%)
Query: 137 NVLGTCSMPFAIRILQFSEKHRAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTACND 196
NV+ + + + + + A+Y+PE PG+ YR PK+ IF +G I T
Sbjct: 12 NVVASTGIGQELDLQSVAMDLEGADYDPEQFPGLVYRTQEPKSAALIFRSGKIVCTGAKS 71
Query: 197 SNKI 200
++ +
Sbjct: 72 TDDV 75
>gi|448608858|ref|ZP_21660137.1| transcription factor [Haloferax mucosum ATCC BAA-1512]
gi|445747235|gb|ELZ98691.1| transcription factor [Haloferax mucosum ATCC BAA-1512]
Length = 186
Score = 66.6 bits (161), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 74/165 (44%), Gaps = 6/165 (3%)
Query: 40 PEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYRREN--GMVTMKLRKPYTTASIWSSG 97
P I I NVV S + L+L +A + ++ +N G+V + + P A I+ SG
Sbjct: 4 PADSIEIQNVVASTGIGQELDLEALADDLPGADFNPDNFPGLV-YRTQDPKAAALIFRSG 62
Query: 98 KITCTGATSEDQSKIAARRYARCLQRLGFKARFT-NFRVVNVLGTCSMPFAIRI--LQFS 154
KI CTGA S D A L+ L V N++ + + + + L
Sbjct: 63 KIVCTGAKSIDDVHDALGIIFDKLRELQIPVDDDPEITVQNIVSSADLGHNLNLNALAIG 122
Query: 155 EKHRAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTACNDSNK 199
EYEPE PG+ YR+ +PK + +F +G I +T ++
Sbjct: 123 LGLEDVEYEPEQFPGLVYRMDKPKVVILLFGSGKIVITGGKQTDD 167
Score = 44.7 bits (104), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 46/96 (47%), Gaps = 7/96 (7%)
Query: 35 PPAHDPEVDIIINNVVCSFSVRCHLNLRQIALN-GV-NVEYRREN--GMVTMKLRKPYTT 90
P DPE I + N+V S + +LNL +A+ G+ +VEY E G+V ++ KP
Sbjct: 92 PVDDDPE--ITVQNIVSSADLGHNLNLNALAIGLGLEDVEYEPEQFPGLV-YRMDKPKVV 148
Query: 91 ASIWSSGKITCTGATSEDQSKIAARRYARCLQRLGF 126
++ SGKI TG D + A + LG
Sbjct: 149 ILLFGSGKIVITGGKQTDDAATAVEEIVERIDALGL 184
>gi|57640067|ref|YP_182545.1| transcription factor [Thermococcus kodakarensis KOD1]
gi|2833446|sp|Q52366.1|TBP_PYRKO RecName: Full=TATA-box-binding protein; AltName: Full=Box A-binding
protein; Short=BAP; AltName: Full=TATA sequence-binding
protein; Short=TBP; AltName: Full=TATA-box factor
gi|2129420|pir||JC4514 TATA-binding protein - Pyrococcus sp
gi|1405351|dbj|BAA08743.1| TATA binding protein [Pyrococcus sp.]
gi|57158391|dbj|BAD84321.1| transcription initiation factor TFIID [Thermococcus kodakarensis
KOD1]
Length = 190
Score = 66.6 bits (161), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 48/155 (30%), Positives = 76/155 (49%), Gaps = 12/155 (7%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYRREN--GMVTMKLRKPYTTASIWSSGKITCTG 103
I N+V S + LNL ++ + +Y E G++ + P I+SSGK+ TG
Sbjct: 11 IENIVASVDLFTDLNLEKVIEICPSSKYNPEEFPGIIC-RFDDPKVALLIFSSGKLVVTG 69
Query: 104 ATSEDQSKIAARRYARCLQRLGFKARFT---NFRVVNVL--GTCSMPFAIRILQFSEKHR 158
A S D K A + L+++G A+FT + N++ G M F + + +
Sbjct: 70 AKSVDDIKRAVYKLIEMLKKIG--AKFTREPQIDIQNMVFSGDIGMEFNLDAVALILPN- 126
Query: 159 AAEYEPELHPGVTYRITRPKATLKIFSTGGITVTA 193
EYEPE PGV YR+ P+A + +FS+G I +
Sbjct: 127 -CEYEPEQFPGVIYRVKEPRAVILLFSSGKIVCSG 160
Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 48/90 (53%), Gaps = 3/90 (3%)
Query: 38 HDPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYRRENG-MVTMKLRKPYTTASIWSS 96
+P++DI N+V S + NL +AL N EY E V ++++P ++SS
Sbjct: 96 REPQIDI--QNMVFSGDIGMEFNLDAVALILPNCEYEPEQFPGVIYRVKEPRAVILLFSS 153
Query: 97 GKITCTGATSEDQSKIAARRYARCLQRLGF 126
GKI C+GA SE + A ++ R L++ G
Sbjct: 154 GKIVCSGAKSEQDAWEAVKKLLRELEKYGL 183
Score = 40.0 bits (92), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 34/70 (48%)
Query: 131 TNFRVVNVLGTCSMPFAIRILQFSEKHRAAEYEPELHPGVTYRITRPKATLKIFSTGGIT 190
R+ N++ + + + + + E +++Y PE PG+ R PK L IFS+G +
Sbjct: 7 VKLRIENIVASVDLFTDLNLEKVIEICPSSKYNPEEFPGIICRFDDPKVALLIFSSGKLV 66
Query: 191 VTACNDSNKI 200
VT + I
Sbjct: 67 VTGAKSVDDI 76
>gi|409723661|ref|ZP_11270805.1| transcription factor [Halococcus hamelinensis 100A6]
gi|448722730|ref|ZP_21705261.1| transcription factor [Halococcus hamelinensis 100A6]
gi|445788867|gb|EMA39568.1| transcription factor [Halococcus hamelinensis 100A6]
Length = 189
Score = 66.6 bits (161), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 46/162 (28%), Positives = 75/162 (46%), Gaps = 6/162 (3%)
Query: 37 AHDPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYRREN--GMVTMKLRKPYTTASIW 94
A DP+ I I NVV S + L+L+ +A++ +Y E G+V + + P + A I+
Sbjct: 3 AQDPKETINIENVVASTGIGQELDLQSVAMDLEGADYDPEQFPGLV-YRTQNPKSAALIF 61
Query: 95 SSGKITCTGATSEDQSKIAARRYARCLQRLGFKARFT-NFRVVNVLGTCSMPFAIRI--L 151
SGKI CTGA S + L+ L K V N++ + + + + +
Sbjct: 62 RSGKIVCTGAKSTADVHESLEIVFDKLRDLEIKVEDAPEIVVQNIVTSADLQKTLNLNAI 121
Query: 152 QFSEKHRAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTA 193
EYEPE PG+ YR+ P+ +F +G + +T
Sbjct: 122 AIGLGLENIEYEPEQFPGLVYRLDDPEVVALLFGSGKLVITG 163
Score = 39.7 bits (91), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 38/66 (57%), Gaps = 5/66 (7%)
Query: 43 DIIINNVVCSFSVRCHLNLRQIALN-GV-NVEYRREN--GMVTMKLRKPYTTASIWSSGK 98
+I++ N+V S ++ LNL IA+ G+ N+EY E G+V +L P A ++ SGK
Sbjct: 100 EIVVQNIVTSADLQKTLNLNAIAIGLGLENIEYEPEQFPGLV-YRLDDPEVVALLFGSGK 158
Query: 99 ITCTGA 104
+ TG
Sbjct: 159 LVITGG 164
Score = 38.1 bits (87), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 29/62 (46%)
Query: 133 FRVVNVLGTCSMPFAIRILQFSEKHRAAEYEPELHPGVTYRITRPKATLKIFSTGGITVT 192
+ NV+ + + + + + A+Y+PE PG+ YR PK+ IF +G I T
Sbjct: 10 INIENVVASTGIGQELDLQSVAMDLEGADYDPEQFPGLVYRTQNPKSAALIFRSGKIVCT 69
Query: 193 AC 194
Sbjct: 70 GA 71
>gi|227827548|ref|YP_002829328.1| transcription factor [Sulfolobus islandicus M.14.25]
gi|227830235|ref|YP_002832015.1| transcription factor [Sulfolobus islandicus L.S.2.15]
gi|229579050|ref|YP_002837448.1| transcription factor [Sulfolobus islandicus Y.G.57.14]
gi|229582199|ref|YP_002840598.1| transcription factor [Sulfolobus islandicus Y.N.15.51]
gi|229584751|ref|YP_002843253.1| transcription factor [Sulfolobus islandicus M.16.27]
gi|238619705|ref|YP_002914531.1| transcription factor [Sulfolobus islandicus M.16.4]
gi|284997658|ref|YP_003419425.1| TATA-box binding protein [Sulfolobus islandicus L.D.8.5]
gi|385773217|ref|YP_005645783.1| TATA-box binding family protein [Sulfolobus islandicus HVE10/4]
gi|385775851|ref|YP_005648419.1| TATA-box binding family protein [Sulfolobus islandicus REY15A]
gi|227456683|gb|ACP35370.1| TATA-box binding family protein [Sulfolobus islandicus L.S.2.15]
gi|227459344|gb|ACP38030.1| TATA-box binding family protein [Sulfolobus islandicus M.14.25]
gi|228009764|gb|ACP45526.1| TATA-box binding family protein [Sulfolobus islandicus Y.G.57.14]
gi|228012915|gb|ACP48676.1| TATA-box binding family protein [Sulfolobus islandicus Y.N.15.51]
gi|228019801|gb|ACP55208.1| TATA-box binding family protein [Sulfolobus islandicus M.16.27]
gi|238380775|gb|ACR41863.1| TATA-box binding family protein [Sulfolobus islandicus M.16.4]
gi|284445553|gb|ADB87055.1| TATA-box binding protein [Sulfolobus islandicus L.D.8.5]
gi|323474599|gb|ADX85205.1| TATA-box binding family protein [Sulfolobus islandicus REY15A]
gi|323477331|gb|ADX82569.1| TATA-box binding family protein [Sulfolobus islandicus HVE10/4]
Length = 181
Score = 66.6 bits (161), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 71/134 (52%), Gaps = 4/134 (2%)
Query: 70 NVEYRREN--GMVTMKLRKPYTTASIWSSGKITCTGATSEDQSKIAARRYARCLQRLGFK 127
N+EY + G++ +L +P TA I+ SGK+ TGA S ++ A +R + L++ G K
Sbjct: 21 NIEYDPDQFPGLI-FRLEQPKVTALIFKSGKMVVTGAKSTEELIKAVKRIIKTLKKYGIK 79
Query: 128 ARFT-NFRVVNVLGTCSMPFAIRILQFSEKHRAAEYEPELHPGVTYRITRPKATLKIFST 186
++ N++ + ++ + + + + YEPE PG+ +R+ P+ L IFS+
Sbjct: 80 IMGKPKIQIQNIVASANLHVNVNLDKAAFLLENNMYEPEQFPGLIFRMDDPRVVLLIFSS 139
Query: 187 GGITVTACNDSNKI 200
G + +T +++
Sbjct: 140 GKMVITGAKREDEV 153
Score = 40.4 bits (93), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 41/83 (49%), Gaps = 3/83 (3%)
Query: 44 IIINNVVCSFSVRCHLNLRQIALNGVNVEYRREN--GMVTMKLRKPYTTASIWSSGKITC 101
I I N+V S ++ ++NL + A N Y E G++ ++ P I+SSGK+
Sbjct: 86 IQIQNIVASANLHVNVNLDKAAFLLENNMYEPEQFPGLI-FRMDDPRVVLLIFSSGKMVI 144
Query: 102 TGATSEDQSKIAARRYARCLQRL 124
TGA ED+ A +R L L
Sbjct: 145 TGAKREDEVSKAVKRIFDKLAEL 167
>gi|342306417|dbj|BAK54506.1| TATA box-binding protein [Sulfolobus tokodaii str. 7]
Length = 175
Score = 66.6 bits (161), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 68/134 (50%), Gaps = 4/134 (2%)
Query: 70 NVEYRREN--GMVTMKLRKPYTTASIWSSGKITCTGATSEDQSKIAARRYARCLQRLGFK 127
NVEY + G++ +L P T+ I+ SGK+ TGA S D+ A +R + L+R G
Sbjct: 16 NVEYDPDQFPGLI-FRLEAPKVTSLIFKSGKMVVTGAKSTDELIKAVKRIIKTLKRYGMN 74
Query: 128 ARFT-NFRVVNVLGTCSMPFAIRILQFSEKHRAAEYEPELHPGVTYRITRPKATLKIFST 186
++ N++ + ++ + + + + YEPE PG+ YR+ P+ L IFS+
Sbjct: 75 LTGKPKIQIQNIVASANLHVIVNLDKAAFLLENNMYEPEQFPGLIYRMEDPRVVLLIFSS 134
Query: 187 GGITVTACNDSNKI 200
G + +T ++
Sbjct: 135 GKMVITGAKREEEV 148
>gi|119719211|ref|YP_919706.1| TATA-box binding [Thermofilum pendens Hrk 5]
gi|119524331|gb|ABL77703.1| TATA binding protein of transcription factor TFIID [Thermofilum
pendens Hrk 5]
Length = 142
Score = 66.2 bits (160), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 63/120 (52%), Gaps = 1/120 (0%)
Query: 82 MKLRKPYTTASIWSSGKITCTGATSEDQSKIAARRYARCLQRLGFKARFT-NFRVVNVLG 140
++L +P T I+SSGK+ CTGA SE + + A + + L+ G + V N++
Sbjct: 2 LRLTRPKTATLIFSSGKMVCTGAKSEAEVQKAVKSIIKLLKAHGIDIKNEPVIEVQNIVA 61
Query: 141 TCSMPFAIRILQFSEKHRAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
+ ++ ++ + + + + YEPE PG+ YR+ PK L IFS+G + T ++
Sbjct: 62 SANLKASVDLERAAFLLENSMYEPEQFPGLIYRMQDPKVVLLIFSSGKVVCTGAKKEEEV 121
Score = 42.7 bits (99), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 44/84 (52%), Gaps = 3/84 (3%)
Query: 44 IIINNVVCSFSVRCHLNLRQIALNGVNVEYRREN--GMVTMKLRKPYTTASIWSSGKITC 101
I + N+V S +++ ++L + A N Y E G++ +++ P I+SSGK+ C
Sbjct: 54 IEVQNIVASANLKASVDLERAAFLLENSMYEPEQFPGLI-YRMQDPKVVLLIFSSGKVVC 112
Query: 102 TGATSEDQSKIAARRYARCLQRLG 125
TGA E++ K A + L+ G
Sbjct: 113 TGAKKEEEVKRAVEKIYNILKEQG 136
>gi|448433649|ref|ZP_21585976.1| transcription factor [Halorubrum tebenquichense DSM 14210]
gi|445686241|gb|ELZ38577.1| transcription factor [Halorubrum tebenquichense DSM 14210]
Length = 186
Score = 66.2 bits (160), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 45/161 (27%), Positives = 76/161 (47%), Gaps = 9/161 (5%)
Query: 39 DPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYRREN--GMVTMKLRKPYTTASIWSS 96
DP+ I + NVV S + L+L+ +A++ +Y E G+V + P + A I+ S
Sbjct: 4 DPKETITVENVVASTGIGQELDLQSVAMDLEGADYDPEQFPGLV-YRTADPKSAALIFRS 62
Query: 97 GKITCTGATSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRI----LQ 152
GKI CTGA S + + L+ L V N++ + + ++ + +
Sbjct: 63 GKIVCTGANSIEAVHGSLDIVFEELRALQIPIEDPEITVQNIVTSADLGESLNLNAIAIG 122
Query: 153 FSEKHRAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTA 193
+H EYEPE PG+ YR+ P+ +F +G + VT
Sbjct: 123 LGLEH--IEYEPEQFPGLVYRLDEPEVVALLFGSGKVVVTG 161
Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 48/97 (49%), Gaps = 7/97 (7%)
Query: 34 QPPAHDPEVDIIINNVVCSFSVRCHLNLRQIALN-GVN-VEYRREN--GMVTMKLRKPYT 89
Q P DPE I + N+V S + LNL IA+ G+ +EY E G+V +L +P
Sbjct: 91 QIPIEDPE--ITVQNIVTSADLGESLNLNAIAIGLGLEHIEYEPEQFPGLV-YRLDEPEV 147
Query: 90 TASIWSSGKITCTGATSEDQSKIAARRYARCLQRLGF 126
A ++ SGK+ TG TS ++ A L LG
Sbjct: 148 VALLFGSGKVVVTGGTSPADAEAAVDVIVEELNGLGL 184
Score = 40.4 bits (93), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 30/61 (49%)
Query: 135 VVNVLGTCSMPFAIRILQFSEKHRAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTAC 194
V NV+ + + + + + A+Y+PE PG+ YR PK+ IF +G I T
Sbjct: 11 VENVVASTGIGQELDLQSVAMDLEGADYDPEQFPGLVYRTADPKSAALIFRSGKIVCTGA 70
Query: 195 N 195
N
Sbjct: 71 N 71
>gi|15921539|ref|NP_377208.1| transcription factor [Sulfolobus tokodaii str. 7]
Length = 166
Score = 66.2 bits (160), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 68/134 (50%), Gaps = 4/134 (2%)
Query: 70 NVEYRREN--GMVTMKLRKPYTTASIWSSGKITCTGATSEDQSKIAARRYARCLQRLGFK 127
NVEY + G++ +L P T+ I+ SGK+ TGA S D+ A +R + L+R G
Sbjct: 7 NVEYDPDQFPGLI-FRLEAPKVTSLIFKSGKMVVTGAKSTDELIKAVKRIIKTLKRYGMN 65
Query: 128 ARFT-NFRVVNVLGTCSMPFAIRILQFSEKHRAAEYEPELHPGVTYRITRPKATLKIFST 186
++ N++ + ++ + + + + YEPE PG+ YR+ P+ L IFS+
Sbjct: 66 LTGKPKIQIQNIVASANLHVIVNLDKAAFLLENNMYEPEQFPGLIYRMEDPRVVLLIFSS 125
Query: 187 GGITVTACNDSNKI 200
G + +T ++
Sbjct: 126 GKMVITGAKREEEV 139
>gi|448576731|ref|ZP_21642607.1| transcription factor [Haloferax larsenii JCM 13917]
gi|445728919|gb|ELZ80519.1| transcription factor [Haloferax larsenii JCM 13917]
Length = 188
Score = 66.2 bits (160), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 44/158 (27%), Positives = 70/158 (44%), Gaps = 6/158 (3%)
Query: 44 IIINNVVCSFSVRCHLNLRQIALNGVNVEYRREN--GMVTMKLRKPYTTASIWSSGKITC 101
I I NVV S + L+L+ ++L+ EY +N G+V + P + ++ SGKI C
Sbjct: 10 IEIQNVVASTGIEQELDLKSLSLDMAGTEYNPDNFPGLV-YRTSDPKSACLVFRSGKIVC 68
Query: 102 TGATSEDQSKIAARRYARCLQRLGFKA-RFTNFRVVNVLGTCSM--PFAIRILQFSEKHR 158
TGA S + A L LG V N++ + + + L
Sbjct: 69 TGADSVEGVHAALDILFEELSDLGIPLPDEPEITVQNIVSSADLRSNLNLNALAIGLGLE 128
Query: 159 AAEYEPELHPGVTYRITRPKATLKIFSTGGITVTACND 196
EYEPE PG+ YR+ P + +F +G + +T +
Sbjct: 129 DVEYEPEQFPGLVYRLEEPSVVVLMFGSGKVVITGAKE 166
Score = 45.4 bits (106), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 51/96 (53%), Gaps = 7/96 (7%)
Query: 35 PPAHDPEVDIIINNVVCSFSVRCHLNLRQIALN-GV-NVEYRREN--GMVTMKLRKPYTT 90
P +PE I + N+V S +R +LNL +A+ G+ +VEY E G+V +L +P
Sbjct: 94 PLPDEPE--ITVQNIVSSADLRSNLNLNALAIGLGLEDVEYEPEQFPGLV-YRLEEPSVV 150
Query: 91 ASIWSSGKITCTGATSEDQSKIAARRYARCLQRLGF 126
++ SGK+ TGA Q++ A +Q+LG
Sbjct: 151 VLMFGSGKVVITGAKEVAQAEQAIEVVRDEVQKLGL 186
>gi|448536157|ref|ZP_21622402.1| transcription factor [Halorubrum hochstenium ATCC 700873]
gi|445702600|gb|ELZ54544.1| transcription factor [Halorubrum hochstenium ATCC 700873]
Length = 186
Score = 66.2 bits (160), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 45/161 (27%), Positives = 76/161 (47%), Gaps = 9/161 (5%)
Query: 39 DPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYRREN--GMVTMKLRKPYTTASIWSS 96
DP+ I + NVV S + L+L+ +A++ +Y E G+V + P + A I+ S
Sbjct: 4 DPKETITVENVVASTGIGQELDLQSVAMDLEGADYDPEQFPGLV-YRTADPKSAALIFRS 62
Query: 97 GKITCTGATSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRI----LQ 152
GKI CTGA S + + L+ L V N++ + + ++ + +
Sbjct: 63 GKIVCTGANSIEAVHGSLDIVFEELRALQIPIEDPEITVQNIVTSADLGKSLNLNAIAIG 122
Query: 153 FSEKHRAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTA 193
+H EYEPE PG+ YR+ P+ +F +G + VT
Sbjct: 123 LGLEH--IEYEPEQFPGLVYRLDEPEVVALLFGSGKVVVTG 161
Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 48/97 (49%), Gaps = 7/97 (7%)
Query: 34 QPPAHDPEVDIIINNVVCSFSVRCHLNLRQIALN-GVN-VEYRREN--GMVTMKLRKPYT 89
Q P DPE I + N+V S + LNL IA+ G+ +EY E G+V +L +P
Sbjct: 91 QIPIEDPE--ITVQNIVTSADLGKSLNLNAIAIGLGLEHIEYEPEQFPGLV-YRLDEPEV 147
Query: 90 TASIWSSGKITCTGATSEDQSKIAARRYARCLQRLGF 126
A ++ SGK+ TG TS ++ A L LG
Sbjct: 148 VALLFGSGKVVVTGGTSPADAEAAVDVIVEELNGLGL 184
Score = 40.4 bits (93), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 30/61 (49%)
Query: 135 VVNVLGTCSMPFAIRILQFSEKHRAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTAC 194
V NV+ + + + + + A+Y+PE PG+ YR PK+ IF +G I T
Sbjct: 11 VENVVASTGIGQELDLQSVAMDLEGADYDPEQFPGLVYRTADPKSAALIFRSGKIVCTGA 70
Query: 195 N 195
N
Sbjct: 71 N 71
>gi|448316221|ref|ZP_21505845.1| transcription factor [Natronococcus jeotgali DSM 18795]
gi|445609220|gb|ELY63027.1| transcription factor [Natronococcus jeotgali DSM 18795]
Length = 186
Score = 66.2 bits (160), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 75/165 (45%), Gaps = 6/165 (3%)
Query: 40 PEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYRREN--GMVTMKLRKPYTTASIWSSG 97
P+ I I NVV S + L L +A++ +Y E G+V + P A I+ SG
Sbjct: 4 PQDSITIENVVASSGIGQELALESLAMDLPGADYDPEQFPGLV-YRTTDPKAAALIFRSG 62
Query: 98 KITCTGATSEDQSKIAARRYARCLQRLGFKARFT-NFRVVNVLGTCSMPFAIRI--LQFS 154
KI CTGA S + + + R L+ L + V N++ + + ++ + +
Sbjct: 63 KIVCTGAKSIEGVQESMRIVFEKLRDLQIEVEADPEIVVQNIVSSADLGRSLNLNAIAIG 122
Query: 155 EKHRAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTACNDSNK 199
+ EYEPE PG+ YR+ P +F +G + VT D +
Sbjct: 123 LGLESIEYEPEQFPGLVYRLDEPDVVTLLFGSGKLVVTGGKDVDD 167
Score = 42.4 bits (98), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 47/92 (51%), Gaps = 7/92 (7%)
Query: 39 DPEVDIIINNVVCSFSVRCHLNLRQIALN-GV-NVEYRREN--GMVTMKLRKPYTTASIW 94
DPE I++ N+V S + LNL IA+ G+ ++EY E G+V +L +P ++
Sbjct: 96 DPE--IVVQNIVSSADLGRSLNLNAIAIGLGLESIEYEPEQFPGLV-YRLDEPDVVTLLF 152
Query: 95 SSGKITCTGATSEDQSKIAARRYARCLQRLGF 126
SGK+ TG D ++ A L+ LG
Sbjct: 153 GSGKLVVTGGKDVDDARHAIDVIVERLEDLGL 184
>gi|448736860|ref|ZP_21718941.1| transcription factor [Halococcus thailandensis JCM 13552]
gi|445805544|gb|EMA55752.1| transcription factor [Halococcus thailandensis JCM 13552]
Length = 203
Score = 66.2 bits (160), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 41/161 (25%), Positives = 72/161 (44%), Gaps = 5/161 (3%)
Query: 39 DPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYRREN--GMVTMKLRKPYTTASIWSS 96
DP + + NVV S ++ ++L+ +AL+ ++ E G++ + T I+ S
Sbjct: 21 DPHATLEVQNVVVSSTLNQEIDLKSVALDLTGADFDPEQFPGVI-YRPESAEATCLIFRS 79
Query: 97 GKITCTGATSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSM--PFAIRILQFS 154
GKITCTGA S + ++ + ++ LG V N++ + + +
Sbjct: 80 GKITCTGAGSIEGARETVQATVETVRGLGIDVEEPTVTVQNIVSDADLGEELNLEAIAIG 139
Query: 155 EKHRAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTACN 195
EYEPE PG+ YR+ P + +F TG +T
Sbjct: 140 LGLEDIEYEPEQFPGLIYRLDEPDTVVLLFGTGKTVITGAE 180
>gi|448591939|ref|ZP_21651314.1| transcription factor [Haloferax elongans ATCC BAA-1513]
gi|445733228|gb|ELZ84803.1| transcription factor [Haloferax elongans ATCC BAA-1513]
Length = 188
Score = 66.2 bits (160), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 44/158 (27%), Positives = 70/158 (44%), Gaps = 6/158 (3%)
Query: 44 IIINNVVCSFSVRCHLNLRQIALNGVNVEYRREN--GMVTMKLRKPYTTASIWSSGKITC 101
I I NVV S + L+L+ ++L+ EY +N G+V + P + ++ SGKI C
Sbjct: 10 IEIQNVVASTGIEQELDLKSLSLDMAGTEYNPDNFPGLV-YRTSDPKSACLVFRSGKIVC 68
Query: 102 TGATSEDQSKIAARRYARCLQRLGFKA-RFTNFRVVNVLGTCSM--PFAIRILQFSEKHR 158
TGA S + A L LG V N++ + + + L
Sbjct: 69 TGADSVEGVHAALDILFEELSDLGIPLPDEPEITVQNIVSSADLRSNLNLNALAIGLGLE 128
Query: 159 AAEYEPELHPGVTYRITRPKATLKIFSTGGITVTACND 196
EYEPE PG+ YR+ P + +F +G + +T +
Sbjct: 129 DVEYEPEQFPGLVYRLEEPSVVVLMFGSGKVVITGAKE 166
Score = 46.2 bits (108), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 52/96 (54%), Gaps = 7/96 (7%)
Query: 35 PPAHDPEVDIIINNVVCSFSVRCHLNLRQIALN-GV-NVEYRREN--GMVTMKLRKPYTT 90
P +PE I + N+V S +R +LNL +A+ G+ +VEY E G+V +L +P
Sbjct: 94 PLPDEPE--ITVQNIVSSADLRSNLNLNALAIGLGLEDVEYEPEQFPGLV-YRLEEPSVV 150
Query: 91 ASIWSSGKITCTGATSEDQSKIAARRYARCLQRLGF 126
++ SGK+ TGA Q++ A + +Q+LG
Sbjct: 151 VLMFGSGKVVITGAKEVAQAEEAIKVVRDEVQKLGL 186
>gi|448451667|ref|ZP_21592967.1| transcription factor [Halorubrum litoreum JCM 13561]
gi|448483665|ref|ZP_21605812.1| transcription factor [Halorubrum arcis JCM 13916]
gi|448514240|ref|ZP_21616992.1| transcription factor [Halorubrum distributum JCM 9100]
gi|448526080|ref|ZP_21619698.1| transcription factor [Halorubrum distributum JCM 10118]
gi|445692908|gb|ELZ45077.1| transcription factor [Halorubrum distributum JCM 9100]
gi|445699280|gb|ELZ51311.1| transcription factor [Halorubrum distributum JCM 10118]
gi|445810523|gb|EMA60548.1| transcription factor [Halorubrum litoreum JCM 13561]
gi|445820680|gb|EMA70489.1| transcription factor [Halorubrum arcis JCM 13916]
Length = 186
Score = 66.2 bits (160), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 45/161 (27%), Positives = 76/161 (47%), Gaps = 9/161 (5%)
Query: 39 DPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYRREN--GMVTMKLRKPYTTASIWSS 96
DP+ I + NVV S + L+L+ +A++ +Y E G+V + P + A I+ S
Sbjct: 4 DPKETITVENVVASTGIGQELDLQSVAMDLEGADYDPEQFPGLV-YRTTDPKSAALIFRS 62
Query: 97 GKITCTGATSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRI----LQ 152
GKI CTGA S + + L+ L V N++ + + ++ + +
Sbjct: 63 GKIVCTGANSIEAVHESLDIVFDELRALQIPIEDPEITVQNIVTSADLGESLNLNAIAIG 122
Query: 153 FSEKHRAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTA 193
+H EYEPE PG+ YR+ P+ +F +G + VT
Sbjct: 123 LGLEH--IEYEPEQFPGLVYRLDEPEVVALLFGSGKVVVTG 161
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 48/97 (49%), Gaps = 7/97 (7%)
Query: 34 QPPAHDPEVDIIINNVVCSFSVRCHLNLRQIALN-GVN-VEYRREN--GMVTMKLRKPYT 89
Q P DPE I + N+V S + LNL IA+ G+ +EY E G+V +L +P
Sbjct: 91 QIPIEDPE--ITVQNIVTSADLGESLNLNAIAIGLGLEHIEYEPEQFPGLV-YRLDEPEV 147
Query: 90 TASIWSSGKITCTGATSEDQSKIAARRYARCLQRLGF 126
A ++ SGK+ TG TS + + A L LG
Sbjct: 148 VALLFGSGKVVVTGGTSPEDAAAAVDVIVEELNGLGL 184
Score = 42.4 bits (98), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 31/61 (50%)
Query: 135 VVNVLGTCSMPFAIRILQFSEKHRAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTAC 194
V NV+ + + + + + A+Y+PE PG+ YR T PK+ IF +G I T
Sbjct: 11 VENVVASTGIGQELDLQSVAMDLEGADYDPEQFPGLVYRTTDPKSAALIFRSGKIVCTGA 70
Query: 195 N 195
N
Sbjct: 71 N 71
>gi|448427036|ref|ZP_21583589.1| transcription factor [Halorubrum terrestre JCM 10247]
gi|445679083|gb|ELZ31564.1| transcription factor [Halorubrum terrestre JCM 10247]
Length = 186
Score = 66.2 bits (160), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 45/161 (27%), Positives = 76/161 (47%), Gaps = 9/161 (5%)
Query: 39 DPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYRREN--GMVTMKLRKPYTTASIWSS 96
DP+ I + NVV S + L+L+ +A++ +Y E G+V + P + A I+ S
Sbjct: 4 DPKETITVENVVASTGIGQELDLQSVAMDLEGADYDPEQFPGLV-YRTTDPKSAALIFRS 62
Query: 97 GKITCTGATSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRI----LQ 152
GKI CTGA S + + L+ L V N++ + + ++ + +
Sbjct: 63 GKIVCTGANSIEAVHESLDIVFDELRALQIPIEDPEITVQNIVTSADLGESLNLNAIAIG 122
Query: 153 FSEKHRAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTA 193
+H EYEPE PG+ YR+ P+ +F +G + VT
Sbjct: 123 LGLEH--IEYEPEQFPGLVYRLDEPEVVALLFGSGKVVVTG 161
Score = 46.6 bits (109), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 48/97 (49%), Gaps = 7/97 (7%)
Query: 34 QPPAHDPEVDIIINNVVCSFSVRCHLNLRQIALN-GVN-VEYRREN--GMVTMKLRKPYT 89
Q P DPE I + N+V S + LNL IA+ G+ +EY E G+V +L +P
Sbjct: 91 QIPIEDPE--ITVQNIVTSADLGESLNLNAIAIGLGLEHIEYEPEQFPGLV-YRLDEPEV 147
Query: 90 TASIWSSGKITCTGATSEDQSKIAARRYARCLQRLGF 126
A ++ SGK+ TG T+ ++ A L LG
Sbjct: 148 VALLFGSGKVVVTGGTTPADAEAAVDVIVEELNGLGL 184
Score = 42.4 bits (98), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 31/61 (50%)
Query: 135 VVNVLGTCSMPFAIRILQFSEKHRAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTAC 194
V NV+ + + + + + A+Y+PE PG+ YR T PK+ IF +G I T
Sbjct: 11 VENVVASTGIGQELDLQSVAMDLEGADYDPEQFPGLVYRTTDPKSAALIFRSGKIVCTGA 70
Query: 195 N 195
N
Sbjct: 71 N 71
>gi|448417264|ref|ZP_21579282.1| transcription factor [Halosarcina pallida JCM 14848]
gi|445678487|gb|ELZ30980.1| transcription factor [Halosarcina pallida JCM 14848]
Length = 187
Score = 66.2 bits (160), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 45/160 (28%), Positives = 73/160 (45%), Gaps = 6/160 (3%)
Query: 39 DPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYRREN--GMVTMKLRKPYTTASIWSS 96
DP+ I I NVV S + L+L+ +A++ +Y E G+V + ++P + A I+ S
Sbjct: 3 DPKDTINIENVVASTGIGQELDLQSVAMDLEGADYDPEQFPGLV-YRTQEPKSAALIFRS 61
Query: 97 GKITCTGATSEDQSKIAARRYARCLQRLGFKARFT-NFRVVNVLGTCSM--PFAIRILQF 153
GKI CTGA S D + L+ L V N++ + + + +
Sbjct: 62 GKIVCTGAKSTDDVHESLELVFEKLRALQIPVEDDPEITVQNIVTSADLGRDLNLNAIAI 121
Query: 154 SEKHRAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTA 193
EYEPE PG+ YR+ P +F +G + +T
Sbjct: 122 GLGLENIEYEPEQFPGLVYRLDSPDVVALLFGSGKLVITG 161
Score = 43.1 bits (100), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 45/96 (46%), Gaps = 7/96 (7%)
Query: 35 PPAHDPEVDIIINNVVCSFSVRCHLNLRQIALN-GV-NVEYRREN--GMVTMKLRKPYTT 90
P DPE I + N+V S + LNL IA+ G+ N+EY E G+V +L P
Sbjct: 92 PVEDDPE--ITVQNIVTSADLGRDLNLNAIAIGLGLENIEYEPEQFPGLV-YRLDSPDVV 148
Query: 91 ASIWSSGKITCTGATSEDQSKIAARRYARCLQRLGF 126
A ++ SGK+ TG ++ A L LG
Sbjct: 149 ALLFGSGKLVITGGKQPSDAEKAVDEIVSRLSDLGL 184
Score = 40.0 bits (92), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 17/68 (25%), Positives = 32/68 (47%)
Query: 133 FRVVNVLGTCSMPFAIRILQFSEKHRAAEYEPELHPGVTYRITRPKATLKIFSTGGITVT 192
+ NV+ + + + + + A+Y+PE PG+ YR PK+ IF +G I T
Sbjct: 8 INIENVVASTGIGQELDLQSVAMDLEGADYDPEQFPGLVYRTQEPKSAALIFRSGKIVCT 67
Query: 193 ACNDSNKI 200
++ +
Sbjct: 68 GAKSTDDV 75
>gi|389847270|ref|YP_006349509.1| TATA-binding transcription initiation factor [Haloferax
mediterranei ATCC 33500]
gi|448614785|ref|ZP_21663813.1| transcription factor [Haloferax mediterranei ATCC 33500]
gi|388244576|gb|AFK19522.1| TATA-binding transcription initiation factor [Haloferax
mediterranei ATCC 33500]
gi|445752872|gb|EMA04291.1| transcription factor [Haloferax mediterranei ATCC 33500]
Length = 186
Score = 66.2 bits (160), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 47/159 (29%), Positives = 71/159 (44%), Gaps = 6/159 (3%)
Query: 40 PEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYRREN--GMVTMKLRKPYTTASIWSSG 97
P I I NVV S + L+L +A + ++ +N G+V + + P A I+ SG
Sbjct: 4 PADSIEIQNVVASTGIGQELDLEALADDLPGADFNPDNFPGLV-YRTQDPKAAALIFRSG 62
Query: 98 KITCTGATSEDQSKIAARRYARCLQRLGFKARFT-NFRVVNVLGTCSMPFAIRI--LQFS 154
KI CTGA S D A L+ L V N++ + + + + L
Sbjct: 63 KIVCTGAKSIDDVHDALEIIFDKLRELQIPVDDEPEITVQNIVSSADLGHNLNLNALAIG 122
Query: 155 EKHRAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTA 193
EYEPE PG+ YR+ PK + +F +G I +T
Sbjct: 123 LGLEDVEYEPEQFPGLVYRMDEPKVVILLFGSGKIVITG 161
Score = 42.7 bits (99), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 46/92 (50%), Gaps = 5/92 (5%)
Query: 39 DPEVDIIINNVVCSFSVRCHLNLRQIALN-GV-NVEYRREN--GMVTMKLRKPYTTASIW 94
D E +I + N+V S + +LNL +A+ G+ +VEY E G+V ++ +P ++
Sbjct: 94 DDEPEITVQNIVSSADLGHNLNLNALAIGLGLEDVEYEPEQFPGLV-YRMDEPKVVILLF 152
Query: 95 SSGKITCTGATSEDQSKIAARRYARCLQRLGF 126
SGKI TG D ++ A + LG
Sbjct: 153 GSGKIVITGGKRTDDAETAVEEIVERIDALGL 184
>gi|15897830|ref|NP_342435.1| transcription factor [Sulfolobus solfataricus P2]
gi|284175636|ref|ZP_06389605.1| transcription factor [Sulfolobus solfataricus 98/2]
gi|384434381|ref|YP_005643739.1| TATA-box binding family protein [Sulfolobus solfataricus 98/2]
gi|13814131|gb|AAK41225.1| TATA box binding protein, hypothetical (tfIID) [Sulfolobus
solfataricus P2]
gi|261602535|gb|ACX92138.1| TATA-box binding family protein [Sulfolobus solfataricus 98/2]
Length = 181
Score = 65.9 bits (159), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 71/134 (52%), Gaps = 4/134 (2%)
Query: 70 NVEYRREN--GMVTMKLRKPYTTASIWSSGKITCTGATSEDQSKIAARRYARCLQRLGFK 127
N+EY + G++ +L +P TA I+ SGK+ TGA S ++ A +R + L++ G K
Sbjct: 21 NIEYDPDQFPGLI-FRLEQPKVTALIFKSGKMVVTGAKSTEELIKAVKRIIKTLKKYGIK 79
Query: 128 ARFT-NFRVVNVLGTCSMPFAIRILQFSEKHRAAEYEPELHPGVTYRITRPKATLKIFST 186
++ N++ + ++ + + + + YEPE PG+ +R+ P+ L IFS+
Sbjct: 80 IVGKPKIQIQNIVASANLHVNVNLDKAAFLLENNMYEPEQFPGLIFRMDDPRVVLLIFSS 139
Query: 187 GGITVTACNDSNKI 200
G + +T +++
Sbjct: 140 GKMVITGAKREDEV 153
Score = 40.0 bits (92), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 41/83 (49%), Gaps = 3/83 (3%)
Query: 44 IIINNVVCSFSVRCHLNLRQIALNGVNVEYRREN--GMVTMKLRKPYTTASIWSSGKITC 101
I I N+V S ++ ++NL + A N Y E G++ ++ P I+SSGK+
Sbjct: 86 IQIQNIVASANLHVNVNLDKAAFLLENNMYEPEQFPGLI-FRMDDPRVVLLIFSSGKMVI 144
Query: 102 TGATSEDQSKIAARRYARCLQRL 124
TGA ED+ A +R L L
Sbjct: 145 TGAKREDEVSKAVKRIFDKLAEL 167
>gi|335441192|ref|ZP_08561913.1| transcription factor [Halorhabdus tiamatea SARL4B]
gi|334888363|gb|EGM26662.1| transcription factor [Halorhabdus tiamatea SARL4B]
Length = 186
Score = 65.9 bits (159), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 48/167 (28%), Positives = 76/167 (45%), Gaps = 20/167 (11%)
Query: 39 DPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYRREN--GMVTMKLRKPYTTASIWSS 96
DP+ I I NVV S + L+L+ +A++ +Y E G+V + ++P + A I+ S
Sbjct: 3 DPKETINIENVVASTGIGQELDLQSVAMDLEGADYDPEQFPGLV-YRTQEPKSAALIFRS 61
Query: 97 GKITCTGATSEDQSKIAARRYARCLQRLGFKARFTNFRVV--------NVLGTCSMP--F 146
GKI CTGA S D LQ + K R N +V N++ + +
Sbjct: 62 GKIVCTGAKSTDDVH-------ESLQIVFGKLRDLNIQVDEDPEIVVQNIVTSADLGRNL 114
Query: 147 AIRILQFSEKHRAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTA 193
+ + EYEPE PG+ YR+ P +F +G + +T
Sbjct: 115 NLNAIAIGLGLENIEYEPEQFPGLVYRLDDPDVVALLFGSGKLVITG 161
Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 49/93 (52%), Gaps = 7/93 (7%)
Query: 38 HDPEVDIIINNVVCSFSVRCHLNLRQIALN-GV-NVEYRREN--GMVTMKLRKPYTTASI 93
DPE I++ N+V S + +LNL IA+ G+ N+EY E G+V +L P A +
Sbjct: 95 EDPE--IVVQNIVTSADLGRNLNLNAIAIGLGLENIEYEPEQFPGLV-YRLDDPDVVALL 151
Query: 94 WSSGKITCTGATSEDQSKIAARRYARCLQRLGF 126
+ SGK+ TG D +K A + L+ LG
Sbjct: 152 FGSGKLVITGGKEPDDAKKAVDKIVSRLEELGL 184
Score = 39.7 bits (91), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 31/64 (48%)
Query: 137 NVLGTCSMPFAIRILQFSEKHRAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTACND 196
NV+ + + + + + A+Y+PE PG+ YR PK+ IF +G I T
Sbjct: 12 NVVASTGIGQELDLQSVAMDLEGADYDPEQFPGLVYRTQEPKSAALIFRSGKIVCTGAKS 71
Query: 197 SNKI 200
++ +
Sbjct: 72 TDDV 75
>gi|448620717|ref|ZP_21667964.1| transcription factor [Haloferax denitrificans ATCC 35960]
gi|445756678|gb|EMA08044.1| transcription factor [Haloferax denitrificans ATCC 35960]
Length = 188
Score = 65.9 bits (159), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 48/157 (30%), Positives = 70/157 (44%), Gaps = 12/157 (7%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYRREN--GMVTMKLRKPYTTASIWSSGKITCTG 103
I NVV S ++ L+L ++ + E+ +N G+V + ++P I+ SGKI CTG
Sbjct: 12 IQNVVASSAIGQELDLESLSNDVTGAEFNPDNFPGLV-YRTQEPKAANLIFRSGKIVCTG 70
Query: 104 ATSEDQSKIAARRYARCLQRLGF------KARFTNFRVVNVLGTCSMPFAIRILQFSEKH 157
A+S D A + L LG +A N LGT + L
Sbjct: 71 ASSIDGVNRALDQVFEELGSLGIPIDNREEATVQNIVSSADLGTT---LNLNALAIGLGL 127
Query: 158 RAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTAC 194
EYEPE PG+ YRI P + +F +G I +T
Sbjct: 128 ENVEYEPEQFPGLVYRIDEPNVVVLLFGSGKIVITGA 164
Score = 40.0 bits (92), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 32/68 (47%)
Query: 127 KARFTNFRVVNVLGTCSMPFAIRILQFSEKHRAAEYEPELHPGVTYRITRPKATLKIFST 186
+ R + + NV+ + ++ + + S AE+ P+ PG+ YR PKA IF +
Sbjct: 4 ETRLESLEIQNVVASSAIGQELDLESLSNDVTGAEFNPDNFPGLVYRTQEPKAANLIFRS 63
Query: 187 GGITVTAC 194
G I T
Sbjct: 64 GKIVCTGA 71
>gi|407463138|ref|YP_006774455.1| TATA-box binding family protein [Candidatus Nitrosopumilus
koreensis AR1]
gi|407046760|gb|AFS81513.1| TATA-box binding family protein [Candidatus Nitrosopumilus
koreensis AR1]
Length = 187
Score = 65.9 bits (159), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 44/160 (27%), Positives = 80/160 (50%), Gaps = 8/160 (5%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYRREN--GMVTMKLRKPYTTASIWSSGKITCTG 103
+ NVV S SV ++L +I + EY E G+V +L+ P T I+ +GK+ CTG
Sbjct: 10 VENVVASASVDQKIDLNEITEKFPDTEYHPEQFPGLV-FRLKSPRTATLIFRTGKMVCTG 68
Query: 104 ATSEDQSKIAARRYARCLQRLGFKARFTNFRVV---NVLGTCSMPFAIRILQFSEKHRAA 160
A SE+ + A + L++ K + N V+ N++ ++ I + + + +
Sbjct: 69 AKSEEMAIKAVNTVVQKLRK--GKIKIKNDAVITVQNIVAAINLGGKIHLEKAARTLPRS 126
Query: 161 EYEPELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
YEPE PG+ +R+ PK + +F++G + T + +
Sbjct: 127 MYEPEQFPGLIHRMLDPKTVILLFASGKLVCTGAKKESDV 166
>gi|448730264|ref|ZP_21712572.1| transcription factor [Halococcus saccharolyticus DSM 5350]
gi|448735254|ref|ZP_21717470.1| transcription factor [Halococcus salifodinae DSM 8989]
gi|445793432|gb|EMA44004.1| transcription factor [Halococcus saccharolyticus DSM 5350]
gi|445798592|gb|EMA48989.1| transcription factor [Halococcus salifodinae DSM 8989]
Length = 189
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 76/162 (46%), Gaps = 6/162 (3%)
Query: 37 AHDPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYRREN--GMVTMKLRKPYTTASIW 94
A DP+ I I NVV S + L+L+ +A++ +Y E G+V + ++P + A I+
Sbjct: 3 AQDPKETINIENVVASTGIGQELDLQSVAMDLEGADYDPEQFPGLV-YRTQEPKSAALIF 61
Query: 95 SSGKITCTGATSEDQSKIAARRYARCLQRLGFKARFT-NFRVVNVLGTCSMPFAIRI--L 151
SGKI CTGA S + L+ L + V N++ + + + + +
Sbjct: 62 RSGKIVCTGAKSTADVHESLEIVFDKLRDLEIRVEDDPEIVVQNIVTSADLQKTLNLNAI 121
Query: 152 QFSEKHRAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTA 193
EYEPE PG+ YR+ P+ +F +G + +T
Sbjct: 122 AIGLGLENIEYEPEQFPGLVYRLDDPEVVALLFGSGKLVITG 163
Score = 41.6 bits (96), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 40/71 (56%), Gaps = 7/71 (9%)
Query: 38 HDPEVDIIINNVVCSFSVRCHLNLRQIALN-GV-NVEYRREN--GMVTMKLRKPYTTASI 93
DPE I++ N+V S ++ LNL IA+ G+ N+EY E G+V +L P A +
Sbjct: 97 DDPE--IVVQNIVTSADLQKTLNLNAIAIGLGLENIEYEPEQFPGLV-YRLDDPEVVALL 153
Query: 94 WSSGKITCTGA 104
+ SGK+ TG
Sbjct: 154 FGSGKLVITGG 164
Score = 38.5 bits (88), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 28/58 (48%)
Query: 137 NVLGTCSMPFAIRILQFSEKHRAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTAC 194
NV+ + + + + + A+Y+PE PG+ YR PK+ IF +G I T
Sbjct: 14 NVVASTGIGQELDLQSVAMDLEGADYDPEQFPGLVYRTQEPKSAALIFRSGKIVCTGA 71
>gi|407465173|ref|YP_006776055.1| 2-alkenal reductase [Candidatus Nitrosopumilus sp. AR2]
gi|407048361|gb|AFS83113.1| 2-alkenal reductase [Candidatus Nitrosopumilus sp. AR2]
Length = 186
Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/152 (29%), Positives = 78/152 (51%), Gaps = 8/152 (5%)
Query: 44 IIINNVVCSFSVRCHLNLRQIALNGVNVEYRREN--GMVTMKLRKPYTTASIWSSGKITC 101
I I NVV S ++ L+L I VEY E G V +L+ P T ++ SGK+ C
Sbjct: 8 IAIVNVVASATIEQKLDLVDITKKFPAVEYHPEQFPGAV-FRLKNPKTATLLFGSGKMVC 66
Query: 102 TGATSEDQSKIAARRYARCLQRLGFKARFTNFRVV---NVLGTCSMPFAIRILQFSEKHR 158
TGA S++ ++ A + L++ K + N +V N++ + ++ + + Q +
Sbjct: 67 TGAKSQELAETAVFEVVKILRK--GKIKIKNDPIVSIQNIVSSINLGGKVNLEQAARTLP 124
Query: 159 AAEYEPELHPGVTYRITRPKATLKIFSTGGIT 190
+ YEPE PG+ +R+ PK + IF++G +
Sbjct: 125 RSMYEPEQFPGLIHRMLDPKTVILIFASGKLV 156
Score = 41.6 bits (96), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 32/61 (52%)
Query: 135 VVNVLGTCSMPFAIRILQFSEKHRAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTAC 194
+VNV+ + ++ + ++ ++K A EY PE PG +R+ PK +F +G + T
Sbjct: 10 IVNVVASATIEQKLDLVDITKKFPAVEYHPEQFPGAVFRLKNPKTATLLFGSGKMVCTGA 69
Query: 195 N 195
Sbjct: 70 K 70
>gi|313124795|ref|YP_004035059.1| tata binding protein of transcription factor tfiid [Halogeometricum
borinquense DSM 11551]
gi|448286783|ref|ZP_21478002.1| transcription factor [Halogeometricum borinquense DSM 11551]
gi|312291160|gb|ADQ65620.1| TATA binding protein of transcription factor TFIID [Halogeometricum
borinquense DSM 11551]
gi|445573322|gb|ELY27844.1| transcription factor [Halogeometricum borinquense DSM 11551]
Length = 187
Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/160 (28%), Positives = 74/160 (46%), Gaps = 6/160 (3%)
Query: 39 DPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYRREN--GMVTMKLRKPYTTASIWSS 96
DP+ I I NVV S + L+L+ +A++ +Y E G+V + ++P + A I+ S
Sbjct: 3 DPKDTINIENVVASTGIGQELDLQSVAMDLEGADYDPEQFPGLV-YRTQEPKSAALIFRS 61
Query: 97 GKITCTGATSEDQSKIAARRYARCLQRLGFKARFT-NFRVVNVLGTCSMP--FAIRILQF 153
GKI CTGA S D + L+ L + V N++ + + + +
Sbjct: 62 GKIVCTGAKSTDDVHESLNLVFDKLRALQIPVDDEPDITVQNIVTSADLGRNLNLNAIAI 121
Query: 154 SEKHRAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTA 193
EYEPE PG+ YR+ P +F +G + +T
Sbjct: 122 GLGLENIEYEPEQFPGLVYRLDSPDVVALLFGSGKLVITG 161
Score = 43.9 bits (102), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 45/92 (48%), Gaps = 5/92 (5%)
Query: 39 DPEVDIIINNVVCSFSVRCHLNLRQIALN-GV-NVEYRREN--GMVTMKLRKPYTTASIW 94
D E DI + N+V S + +LNL IA+ G+ N+EY E G+V +L P A ++
Sbjct: 94 DDEPDITVQNIVTSADLGRNLNLNAIAIGLGLENIEYEPEQFPGLV-YRLDSPDVVALLF 152
Query: 95 SSGKITCTGATSEDQSKIAARRYARCLQRLGF 126
SGK+ TG ++ A L LG
Sbjct: 153 GSGKLVITGGKHPSDAEGAVDEIVSRLSDLGL 184
Score = 39.7 bits (91), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 17/68 (25%), Positives = 32/68 (47%)
Query: 133 FRVVNVLGTCSMPFAIRILQFSEKHRAAEYEPELHPGVTYRITRPKATLKIFSTGGITVT 192
+ NV+ + + + + + A+Y+PE PG+ YR PK+ IF +G I T
Sbjct: 8 INIENVVASTGIGQELDLQSVAMDLEGADYDPEQFPGLVYRTQEPKSAALIFRSGKIVCT 67
Query: 193 ACNDSNKI 200
++ +
Sbjct: 68 GAKSTDDV 75
>gi|146304491|ref|YP_001191807.1| transcription factor [Metallosphaera sedula DSM 5348]
gi|145702741|gb|ABP95883.1| TATA binding protein of transcription factor TFIID [Metallosphaera
sedula DSM 5348]
Length = 176
Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 70/134 (52%), Gaps = 4/134 (2%)
Query: 70 NVEYRREN--GMVTMKLRKPYTTASIWSSGKITCTGATSEDQSKIAARRYARCLQRLGFK 127
NVEY + G++ +L P T+ I+ SGK+ TGA S ++ A +R + L+R G +
Sbjct: 16 NVEYDPDQFPGLI-FRLESPKVTSLIFKSGKMVVTGAKSTEELIKAVKRIIKSLRRYGIR 74
Query: 128 ARFT-NFRVVNVLGTCSMPFAIRILQFSEKHRAAEYEPELHPGVTYRITRPKATLKIFST 186
++ N++ + +M + + + + YEPE PG+ +R+ P+ L IFS+
Sbjct: 75 IGGKPKIQIQNIVASANMHVHVNLDKAAFLLENNMYEPEQFPGLIFRMDEPRVVLLIFSS 134
Query: 187 GGITVTACNDSNKI 200
G + +T +++
Sbjct: 135 GKMVITGAKREDEV 148
Score = 42.7 bits (99), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 43/83 (51%), Gaps = 3/83 (3%)
Query: 44 IIINNVVCSFSVRCHLNLRQIALNGVNVEYRREN--GMVTMKLRKPYTTASIWSSGKITC 101
I I N+V S ++ H+NL + A N Y E G++ ++ +P I+SSGK+
Sbjct: 81 IQIQNIVASANMHVHVNLDKAAFLLENNMYEPEQFPGLI-FRMDEPRVVLLIFSSGKMVI 139
Query: 102 TGATSEDQSKIAARRYARCLQRL 124
TGA ED+ A ++ L+ L
Sbjct: 140 TGAKREDEVYKAVKKIFDKLEEL 162
>gi|292654337|ref|YP_003534234.1| TATA-binding transcription initiation factor [Haloferax volcanii
DS2]
gi|433428869|ref|ZP_20407252.1| transcription factor [Haloferax sp. BAB2207]
gi|448293881|ref|ZP_21483984.1| transcription factor [Haloferax volcanii DS2]
gi|448543937|ref|ZP_21625398.1| transcription factor [Haloferax sp. ATCC BAA-646]
gi|448551097|ref|ZP_21629239.1| transcription factor [Haloferax sp. ATCC BAA-645]
gi|448558528|ref|ZP_21633085.1| transcription factor [Haloferax sp. ATCC BAA-644]
gi|448573579|ref|ZP_21641062.1| transcription factor [Haloferax lucentense DSM 14919]
gi|448597726|ref|ZP_21654651.1| transcription factor [Haloferax alexandrinus JCM 10717]
gi|302595869|sp|D4GZA2.1|TBP1_HALVD RecName: Full=TATA-box-binding protein 1; AltName: Full=Box
A-binding protein 1; Short=BAP 1; AltName: Full=TATA
sequence-binding protein 1; Short=TBP 1; AltName:
Full=TATA-box factor 1
gi|291371886|gb|ADE04113.1| TATA-binding transcription initiation factor [Haloferax volcanii
DS2]
gi|432195411|gb|ELK51946.1| transcription factor [Haloferax sp. BAB2207]
gi|445569802|gb|ELY24373.1| transcription factor [Haloferax volcanii DS2]
gi|445706079|gb|ELZ57966.1| transcription factor [Haloferax sp. ATCC BAA-646]
gi|445710653|gb|ELZ62451.1| transcription factor [Haloferax sp. ATCC BAA-645]
gi|445712280|gb|ELZ64062.1| transcription factor [Haloferax sp. ATCC BAA-644]
gi|445718485|gb|ELZ70175.1| transcription factor [Haloferax lucentense DSM 14919]
gi|445739187|gb|ELZ90696.1| transcription factor [Haloferax alexandrinus JCM 10717]
Length = 189
Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/160 (28%), Positives = 73/160 (45%), Gaps = 6/160 (3%)
Query: 39 DPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYRREN--GMVTMKLRKPYTTASIWSS 96
DP+ I I NVV S + L+L+ +A++ +Y E G+V + ++P + A I+ S
Sbjct: 3 DPKDTINIENVVASTGIGQELDLQSVAMDLEGADYDPEQFPGLV-YRTQEPKSAALIFRS 61
Query: 97 GKITCTGATSEDQSKIAARRYARCLQRLGFKARFT-NFRVVNVLGTCSMP--FAIRILQF 153
GKI CTGA S D + L+ L V N++ + + + +
Sbjct: 62 GKIVCTGAKSTDDVHESLEIVFDKLRELQIPVDDDPEITVQNIVTSADLGENLNLNAIAI 121
Query: 154 SEKHRAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTA 193
EYEPE PG+ YR+ P +F +G + +T
Sbjct: 122 GLGLENIEYEPEQFPGLVYRLDEPSVVALLFGSGKLVITG 161
Score = 43.5 bits (101), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 47/96 (48%), Gaps = 7/96 (7%)
Query: 35 PPAHDPEVDIIINNVVCSFSVRCHLNLRQIALN-GV-NVEYRREN--GMVTMKLRKPYTT 90
P DPE I + N+V S + +LNL IA+ G+ N+EY E G+V +L +P
Sbjct: 92 PVDDDPE--ITVQNIVTSADLGENLNLNAIAIGLGLENIEYEPEQFPGLV-YRLDEPSVV 148
Query: 91 ASIWSSGKITCTGATSEDQSKIAARRYARCLQRLGF 126
A ++ SGK+ TG ++ A L LG
Sbjct: 149 ALLFGSGKLVITGGKQPTDAEAAVDVIISRLSELGL 184
Score = 39.7 bits (91), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 31/64 (48%)
Query: 137 NVLGTCSMPFAIRILQFSEKHRAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTACND 196
NV+ + + + + + A+Y+PE PG+ YR PK+ IF +G I T
Sbjct: 12 NVVASTGIGQELDLQSVAMDLEGADYDPEQFPGLVYRTQEPKSAALIFRSGKIVCTGAKS 71
Query: 197 SNKI 200
++ +
Sbjct: 72 TDDV 75
>gi|448604603|ref|ZP_21657770.1| transcription factor [Haloferax sulfurifontis ATCC BAA-897]
gi|448624485|ref|ZP_21670433.1| transcription factor [Haloferax denitrificans ATCC 35960]
gi|445744012|gb|ELZ95492.1| transcription factor [Haloferax sulfurifontis ATCC BAA-897]
gi|445749690|gb|EMA01132.1| transcription factor [Haloferax denitrificans ATCC 35960]
Length = 186
Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/159 (29%), Positives = 71/159 (44%), Gaps = 6/159 (3%)
Query: 40 PEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYRREN--GMVTMKLRKPYTTASIWSSG 97
P I I NVV S + L+L +A + ++ +N G+V + + P A I+ SG
Sbjct: 4 PADSIEIQNVVASTGIGQELDLEALADDLPGADFNPDNFPGLV-YRTQDPKAAALIFRSG 62
Query: 98 KITCTGATSEDQSKIAARRYARCLQRLGFKARFT-NFRVVNVLGTCSMPFAIRI--LQFS 154
KI CTGA S D A L+ L V N++ + + + + L
Sbjct: 63 KIVCTGAKSIDDVHDALGIIFDKLRELQIPVDDEPEITVQNIVSSADLGHNLNLNALAIG 122
Query: 155 EKHRAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTA 193
EYEPE PG+ YR+ PK + +F +G I +T
Sbjct: 123 LGLEDVEYEPEQFPGLVYRMDEPKVVILLFGSGKIVITG 161
Score = 42.7 bits (99), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 46/92 (50%), Gaps = 5/92 (5%)
Query: 39 DPEVDIIINNVVCSFSVRCHLNLRQIALN-GV-NVEYRREN--GMVTMKLRKPYTTASIW 94
D E +I + N+V S + +LNL +A+ G+ +VEY E G+V ++ +P ++
Sbjct: 94 DDEPEITVQNIVSSADLGHNLNLNALAIGLGLEDVEYEPEQFPGLV-YRMDEPKVVILLF 152
Query: 95 SSGKITCTGATSEDQSKIAARRYARCLQRLGF 126
SGKI TG D ++ A + LG
Sbjct: 153 GSGKIVITGGKRTDDAETAVEEIVERIDALGL 184
>gi|292655873|ref|YP_003535770.1| TATA-binding transcription initiation factor [Haloferax volcanii
DS2]
gi|433422047|ref|ZP_20405902.1| transcription factor [Haloferax sp. BAB2207]
gi|448289862|ref|ZP_21481024.1| transcription factor [Haloferax volcanii DS2]
gi|448539630|ref|ZP_21623096.1| transcription factor [Haloferax sp. ATCC BAA-646]
gi|448555929|ref|ZP_21631787.1| transcription factor [Haloferax sp. ATCC BAA-644]
gi|448562556|ref|ZP_21635514.1| transcription factor [Haloferax prahovense DSM 18310]
gi|448570482|ref|ZP_21639312.1| transcription factor [Haloferax lucentense DSM 14919]
gi|448585086|ref|ZP_21647695.1| transcription factor [Haloferax gibbonsii ATCC 33959]
gi|448595442|ref|ZP_21653145.1| transcription factor [Haloferax alexandrinus JCM 10717]
gi|302595861|sp|D4H071.1|TBP2_HALVD RecName: Full=TATA-box-binding protein 2; AltName: Full=Box
A-binding protein 2; Short=BAP 2; AltName: Full=TATA
sequence-binding protein 2; Short=TBP 2; AltName:
Full=TATA-box factor 2
gi|291372685|gb|ADE04912.1| TATA-binding transcription initiation factor [Haloferax volcanii
DS2]
gi|432198733|gb|ELK54984.1| transcription factor [Haloferax sp. BAB2207]
gi|445581044|gb|ELY35408.1| transcription factor [Haloferax volcanii DS2]
gi|445710372|gb|ELZ62187.1| transcription factor [Haloferax sp. ATCC BAA-646]
gi|445717214|gb|ELZ68934.1| transcription factor [Haloferax sp. ATCC BAA-644]
gi|445718874|gb|ELZ70558.1| transcription factor [Haloferax prahovense DSM 18310]
gi|445723129|gb|ELZ74776.1| transcription factor [Haloferax lucentense DSM 14919]
gi|445727425|gb|ELZ79038.1| transcription factor [Haloferax gibbonsii ATCC 33959]
gi|445742896|gb|ELZ94386.1| transcription factor [Haloferax alexandrinus JCM 10717]
Length = 186
Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/159 (29%), Positives = 71/159 (44%), Gaps = 6/159 (3%)
Query: 40 PEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYRREN--GMVTMKLRKPYTTASIWSSG 97
P I I NVV S + L+L +A + ++ +N G+V + + P A I+ SG
Sbjct: 4 PADSIEIQNVVASTGIGQELDLEALADDLPGADFNPDNFPGLV-YRTQDPKAAALIFRSG 62
Query: 98 KITCTGATSEDQSKIAARRYARCLQRLGFKARFT-NFRVVNVLGTCSMPFAIRI--LQFS 154
KI CTGA S D A L+ L V N++ + + + + L
Sbjct: 63 KIVCTGAKSIDDVHDALGIIFDKLRELKIPVDDEPEITVQNIVSSADLGHNLNLNALAIG 122
Query: 155 EKHRAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTA 193
EYEPE PG+ YR+ PK + +F +G I +T
Sbjct: 123 LGLEDVEYEPEQFPGLVYRMDEPKVVILLFGSGKIVITG 161
Score = 42.4 bits (98), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 46/92 (50%), Gaps = 5/92 (5%)
Query: 39 DPEVDIIINNVVCSFSVRCHLNLRQIALN-GV-NVEYRREN--GMVTMKLRKPYTTASIW 94
D E +I + N+V S + +LNL +A+ G+ +VEY E G+V ++ +P ++
Sbjct: 94 DDEPEITVQNIVSSADLGHNLNLNALAIGLGLEDVEYEPEQFPGLV-YRMDEPKVVILLF 152
Query: 95 SSGKITCTGATSEDQSKIAARRYARCLQRLGF 126
SGKI TG D ++ A + LG
Sbjct: 153 GSGKIVITGGKRTDDAETAVEEIVERIDALGL 184
>gi|448488858|ref|ZP_21607457.1| transcription factor [Halorubrum californiensis DSM 19288]
gi|445695479|gb|ELZ47582.1| transcription factor [Halorubrum californiensis DSM 19288]
Length = 186
Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/161 (27%), Positives = 76/161 (47%), Gaps = 9/161 (5%)
Query: 39 DPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYRREN--GMVTMKLRKPYTTASIWSS 96
DP+ I + NVV S + L+L+ +A++ +Y E G+V + P + A I+ S
Sbjct: 4 DPKETITVENVVASTGIGQELDLQSVAMDLEGADYDPEQFPGLV-YRTTDPKSAALIFRS 62
Query: 97 GKITCTGATSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRI----LQ 152
GKI CTGA S + + L+ L V N++ + + ++ + +
Sbjct: 63 GKIVCTGANSIEAVHESLDIVFAELRALQIPIEDPKITVQNIVTSADLGESLNLNAIAIG 122
Query: 153 FSEKHRAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTA 193
+H EYEPE PG+ YR+ P+ +F +G + VT
Sbjct: 123 LGLEH--IEYEPEQFPGLVYRLDDPEVVALLFGSGKVVVTG 161
Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 47/97 (48%), Gaps = 7/97 (7%)
Query: 34 QPPAHDPEVDIIINNVVCSFSVRCHLNLRQIALN-GVN-VEYRREN--GMVTMKLRKPYT 89
Q P DP+ I + N+V S + LNL IA+ G+ +EY E G+V +L P
Sbjct: 91 QIPIEDPK--ITVQNIVTSADLGESLNLNAIAIGLGLEHIEYEPEQFPGLV-YRLDDPEV 147
Query: 90 TASIWSSGKITCTGATSEDQSKIAARRYARCLQRLGF 126
A ++ SGK+ TG T+ D + A L LG
Sbjct: 148 VALLFGSGKVVVTGGTTPDDAAAAVDVIVEELNGLGL 184
Score = 42.4 bits (98), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 31/61 (50%)
Query: 135 VVNVLGTCSMPFAIRILQFSEKHRAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTAC 194
V NV+ + + + + + A+Y+PE PG+ YR T PK+ IF +G I T
Sbjct: 11 VENVVASTGIGQELDLQSVAMDLEGADYDPEQFPGLVYRTTDPKSAALIFRSGKIVCTGA 70
Query: 195 N 195
N
Sbjct: 71 N 71
>gi|448582755|ref|ZP_21646259.1| transcription factor [Haloferax gibbonsii ATCC 33959]
gi|445732403|gb|ELZ83986.1| transcription factor [Haloferax gibbonsii ATCC 33959]
Length = 189
Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/160 (28%), Positives = 73/160 (45%), Gaps = 6/160 (3%)
Query: 39 DPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYRREN--GMVTMKLRKPYTTASIWSS 96
DP+ I I NVV S + L+L+ +A++ +Y E G+V + ++P + A I+ S
Sbjct: 3 DPKDTINIENVVASTGIGQELDLQSVAMDLEGADYDPEQFPGLV-YRTQEPKSAALIFRS 61
Query: 97 GKITCTGATSEDQSKIAARRYARCLQRLGFKARFT-NFRVVNVLGTCSMP--FAIRILQF 153
GKI CTGA S D + L+ L V N++ + + + +
Sbjct: 62 GKIVCTGAKSTDDVHESLEIVFDKLRELQIPVDDDPEITVQNIVTSADLGENLNLNAIAI 121
Query: 154 SEKHRAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTA 193
EYEPE PG+ YR+ P +F +G + +T
Sbjct: 122 GLGLENIEYEPEQFPGLVYRLDEPSVVALLFGSGKLVITG 161
Score = 44.7 bits (104), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 48/96 (50%), Gaps = 7/96 (7%)
Query: 35 PPAHDPEVDIIINNVVCSFSVRCHLNLRQIALN-GV-NVEYRREN--GMVTMKLRKPYTT 90
P DPE I + N+V S + +LNL IA+ G+ N+EY E G+V +L +P
Sbjct: 92 PVDDDPE--ITVQNIVTSADLGENLNLNAIAIGLGLENIEYEPEQFPGLV-YRLDEPSVV 148
Query: 91 ASIWSSGKITCTGATSEDQSKIAARRYARCLQRLGF 126
A ++ SGK+ TG + ++ A L LG
Sbjct: 149 ALLFGSGKLVITGGKKPEDAEAAVDVIISRLSELGL 184
Score = 39.7 bits (91), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 31/64 (48%)
Query: 137 NVLGTCSMPFAIRILQFSEKHRAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTACND 196
NV+ + + + + + A+Y+PE PG+ YR PK+ IF +G I T
Sbjct: 12 NVVASTGIGQELDLQSVAMDLEGADYDPEQFPGLVYRTQEPKSAALIFRSGKIVCTGAKS 71
Query: 197 SNKI 200
++ +
Sbjct: 72 TDDV 75
>gi|448606630|ref|ZP_21659056.1| transcription factor [Haloferax sulfurifontis ATCC BAA-897]
gi|448622378|ref|ZP_21669072.1| transcription factor [Haloferax denitrificans ATCC 35960]
gi|445738838|gb|ELZ90350.1| transcription factor [Haloferax sulfurifontis ATCC BAA-897]
gi|445754460|gb|EMA05865.1| transcription factor [Haloferax denitrificans ATCC 35960]
Length = 189
Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/160 (28%), Positives = 73/160 (45%), Gaps = 6/160 (3%)
Query: 39 DPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYRREN--GMVTMKLRKPYTTASIWSS 96
DP+ I I NVV S + L+L+ +A++ +Y E G+V + ++P + A I+ S
Sbjct: 3 DPKDTINIENVVASTGIGQELDLQSVAMDLEGADYDPEQFPGLV-YRTQEPKSAALIFRS 61
Query: 97 GKITCTGATSEDQSKIAARRYARCLQRLGFKARFT-NFRVVNVLGTCSMP--FAIRILQF 153
GKI CTGA S D + L+ L V N++ + + + +
Sbjct: 62 GKIVCTGAKSTDDVHESLEIVFDKLRELQIPVDDDPEITVQNIVTSADLGENLNLNAIAI 121
Query: 154 SEKHRAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTA 193
EYEPE PG+ YR+ P +F +G + +T
Sbjct: 122 GLGLENIEYEPEQFPGLVYRLDEPSVVALLFGSGKLVITG 161
Score = 43.5 bits (101), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 47/96 (48%), Gaps = 7/96 (7%)
Query: 35 PPAHDPEVDIIINNVVCSFSVRCHLNLRQIALN-GV-NVEYRREN--GMVTMKLRKPYTT 90
P DPE I + N+V S + +LNL IA+ G+ N+EY E G+V +L +P
Sbjct: 92 PVDDDPE--ITVQNIVTSADLGENLNLNAIAIGLGLENIEYEPEQFPGLV-YRLDEPSVV 148
Query: 91 ASIWSSGKITCTGATSEDQSKIAARRYARCLQRLGF 126
A ++ SGK+ TG ++ A L LG
Sbjct: 149 ALLFGSGKLVITGGKQPKDAEAAVDVIISRLSELGL 184
Score = 39.7 bits (91), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 31/64 (48%)
Query: 137 NVLGTCSMPFAIRILQFSEKHRAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTACND 196
NV+ + + + + + A+Y+PE PG+ YR PK+ IF +G I T
Sbjct: 12 NVVASTGIGQELDLQSVAMDLEGADYDPEQFPGLVYRTQEPKSAALIFRSGKIVCTGAKS 71
Query: 197 SNKI 200
++ +
Sbjct: 72 TDDV 75
>gi|20089077|ref|NP_615152.1| transcription factor [Methanosarcina acetivorans C2A]
gi|24638263|sp|Q8TU94.1|TBP2_METAC RecName: Full=TATA-box-binding protein 2; AltName: Full=Box
A-binding protein 2; Short=BAP 2; AltName: Full=TATA
sequence-binding protein 2; Short=TBP 2; AltName:
Full=TATA-box factor 2
gi|19913938|gb|AAM03632.1| TATA-binding protein [Methanosarcina acetivorans C2A]
Length = 185
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/157 (26%), Positives = 79/157 (50%), Gaps = 8/157 (5%)
Query: 44 IIINNVVCSFSVRCHLNLRQIALNGVNVEYRREN---GMVTMKLRKPYTTASIWSSGKIT 100
I I N+V S + +L+++ G+ +N G+V ++ P I++SGK+
Sbjct: 5 ITIENIVASTRLAEDFDLQKLLDTGLKGAVYNKNKFPGLV-YRIENPKAAFLIFASGKVV 63
Query: 101 CTGATSEDQSKIAARRYARCLQRLGFKARFTN--FRVVNVLGTCSMPFAIRI--LQFSEK 156
CTG + + S+IA A L +G+K + V NV+ + ++ ++ + + +
Sbjct: 64 CTGTKNVENSRIALFNLANELNSIGYKGIYLKPEIHVQNVVASANLRTSLNLNAVLSAFG 123
Query: 157 HRAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTA 193
EYEPE+ PG+ Y++ P+ + +F TG + +T
Sbjct: 124 VENVEYEPEVFPGLVYKLADPRVVVLVFRTGKLVITG 160
>gi|330834362|ref|YP_004409090.1| transcription factor [Metallosphaera cuprina Ar-4]
gi|329566501|gb|AEB94606.1| transcription factor [Metallosphaera cuprina Ar-4]
Length = 167
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 70/134 (52%), Gaps = 4/134 (2%)
Query: 70 NVEYRREN--GMVTMKLRKPYTTASIWSSGKITCTGATSEDQSKIAARRYARCLQRLGFK 127
NVEY + G++ +L P T+ I+ SGK+ TGA S ++ A +R + L+R G +
Sbjct: 7 NVEYDPDQFPGLI-FRLESPKVTSLIFKSGKMVVTGAKSTEELIKAVKRIIKSLRRYGIR 65
Query: 128 ARFT-NFRVVNVLGTCSMPFAIRILQFSEKHRAAEYEPELHPGVTYRITRPKATLKIFST 186
++ N++ + +M + + + + YEPE PG+ +R+ P+ L IFS+
Sbjct: 66 IGGKPKIQIQNIVASANMHVHVNLDKAAFLLENNMYEPEQFPGLIFRMDDPRVVLLIFSS 125
Query: 187 GGITVTACNDSNKI 200
G + +T +++
Sbjct: 126 GKMVITGAKREDEV 139
Score = 42.4 bits (98), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 42/83 (50%), Gaps = 3/83 (3%)
Query: 44 IIINNVVCSFSVRCHLNLRQIALNGVNVEYRREN--GMVTMKLRKPYTTASIWSSGKITC 101
I I N+V S ++ H+NL + A N Y E G++ ++ P I+SSGK+
Sbjct: 72 IQIQNIVASANMHVHVNLDKAAFLLENNMYEPEQFPGLI-FRMDDPRVVLLIFSSGKMVI 130
Query: 102 TGATSEDQSKIAARRYARCLQRL 124
TGA ED+ A ++ L+ L
Sbjct: 131 TGAKREDEVYKAVKKIFDKLEEL 153
>gi|240102886|ref|YP_002959195.1| TATA box-binding protein, transcription initiation factor TFIID
(tbp) [Thermococcus gammatolerans EJ3]
gi|239910440|gb|ACS33331.1| TATA box-binding protein, transcription initiation factor TFIID
(tbp) [Thermococcus gammatolerans EJ3]
Length = 182
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/159 (28%), Positives = 75/159 (47%), Gaps = 5/159 (3%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYRREN--GMVTMKLRKPYTTASIWSSGKITCTG 103
+ NVV S + +++ ++A +V+Y G V K+ T I+ SGK+ CTG
Sbjct: 8 VENVVASIDLHGEIDVEKVASKLDSVQYNPSVFPGAV-YKMESFGVTFLIFYSGKLVCTG 66
Query: 104 ATSEDQSKIAARRYARCLQRLGFKARFT-NFRVVNVLGTCSMPFAIRILQFSEKHR-AAE 161
A S + + A + R L+ +G K + +V N++ + F L E
Sbjct: 67 AKSVETIRKATEKLKRTLESMGMKFKGEPEIQVQNIVAAGDLGFGTLDLDIVALTLPNVE 126
Query: 162 YEPELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
YEPE+ PGV YR+ + T+ IF++G + V+ I
Sbjct: 127 YEPEIFPGVVYRVRNSRMTILIFNSGKVVVSGARTEEDI 165
>gi|448727075|ref|ZP_21709452.1| transcription factor [Halococcus morrhuae DSM 1307]
gi|448737752|ref|ZP_21719787.1| transcription factor [Halococcus thailandensis JCM 13552]
gi|445792275|gb|EMA42886.1| transcription factor [Halococcus morrhuae DSM 1307]
gi|445803308|gb|EMA53606.1| transcription factor [Halococcus thailandensis JCM 13552]
Length = 189
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 76/162 (46%), Gaps = 6/162 (3%)
Query: 37 AHDPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYRREN--GMVTMKLRKPYTTASIW 94
A DP+ I I NVV S + L+L+ +A++ +Y E G+V + ++P + A I+
Sbjct: 3 AQDPKETINIENVVASTGIGQELDLQSVAMDLEGADYDPEQFPGLV-YRTQEPKSAALIF 61
Query: 95 SSGKITCTGATSEDQSKIAARRYARCLQRLGFKARFT-NFRVVNVLGTCSMPFAIRI--L 151
SGKI CTGA S + L+ L + V N++ + + + + +
Sbjct: 62 RSGKIVCTGAKSTADVHESLEIVFDKLRDLEIRVEEDPEIVVQNIVTSADLQKTLNLNAI 121
Query: 152 QFSEKHRAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTA 193
EYEPE PG+ YR+ P+ +F +G + +T
Sbjct: 122 AIGLGLENIEYEPEQFPGLVYRLDDPEVVALLFGSGKLVITG 163
Score = 45.1 bits (105), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 47/93 (50%), Gaps = 7/93 (7%)
Query: 38 HDPEVDIIINNVVCSFSVRCHLNLRQIALN-GV-NVEYRREN--GMVTMKLRKPYTTASI 93
DPE I++ N+V S ++ LNL IA+ G+ N+EY E G+V +L P A +
Sbjct: 97 EDPE--IVVQNIVTSADLQKTLNLNAIAIGLGLENIEYEPEQFPGLV-YRLDDPEVVALL 153
Query: 94 WSSGKITCTGATSEDQSKIAARRYARCLQRLGF 126
+ SGK+ TG ++ A + L LG
Sbjct: 154 FGSGKLVITGGKEPADAEHAVDKITDRLDELGL 186
Score = 38.1 bits (87), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 29/62 (46%)
Query: 133 FRVVNVLGTCSMPFAIRILQFSEKHRAAEYEPELHPGVTYRITRPKATLKIFSTGGITVT 192
+ NV+ + + + + + A+Y+PE PG+ YR PK+ IF +G I T
Sbjct: 10 INIENVVASTGIGQELDLQSVAMDLEGADYDPEQFPGLVYRTQEPKSAALIFRSGKIVCT 69
Query: 193 AC 194
Sbjct: 70 GA 71
>gi|296241961|ref|YP_003649448.1| TATA binding protein of transcription factor TFIID [Thermosphaera
aggregans DSM 11486]
gi|296094545|gb|ADG90496.1| TATA binding protein of transcription factor TFIID [Thermosphaera
aggregans DSM 11486]
Length = 193
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 75/151 (49%), Gaps = 4/151 (2%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYRREN--GMVTMKLRKPYTTASIWSSGKITCTG 103
I N+V + + L+L I + Y+ + G++ +L KP TTA I+ SGK+ TG
Sbjct: 13 IENIVATVILEHELDLELIETRIPAITYKPDQFPGLI-FRLDKPKTTALIFKSGKMVVTG 71
Query: 104 ATSEDQSKIAARRYARCLQRLGFKARFT-NFRVVNVLGTCSMPFAIRILQFSEKHRAAEY 162
A S Q A +R + L + K ++ N++ + + + + + + + Y
Sbjct: 72 AKSTQQLIEAVKRMIKVLLKYDIKVTGKPRIQIQNIVASGDIGAYVHLEKAAYLLEDSMY 131
Query: 163 EPELHPGVTYRITRPKATLKIFSTGGITVTA 193
EPE PG+ +R+ P+ L IFS+G + +T
Sbjct: 132 EPEQFPGLIHRMRSPRVVLLIFSSGKMVITG 162
Score = 40.4 bits (93), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 16/69 (23%), Positives = 37/69 (53%)
Query: 132 NFRVVNVLGTCSMPFAIRILQFSEKHRAAEYEPELHPGVTYRITRPKATLKIFSTGGITV 191
++++ N++ T + + + + A Y+P+ PG+ +R+ +PK T IF +G + V
Sbjct: 10 SYKIENIVATVILEHELDLELIETRIPAITYKPDQFPGLIFRLDKPKTTALIFKSGKMVV 69
Query: 192 TACNDSNKI 200
T + ++
Sbjct: 70 TGAKSTQQL 78
>gi|374633744|ref|ZP_09706109.1| TATA-box binding protein (TBP), component of TFIID and TFIIIB
[Metallosphaera yellowstonensis MK1]
gi|373523532|gb|EHP68452.1| TATA-box binding protein (TBP), component of TFIID and TFIIIB
[Metallosphaera yellowstonensis MK1]
Length = 167
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 70/134 (52%), Gaps = 4/134 (2%)
Query: 70 NVEYRREN--GMVTMKLRKPYTTASIWSSGKITCTGATSEDQSKIAARRYARCLQRLGFK 127
NVEY + G++ +L P T+ I+ SGK+ TGA S ++ A +R + L+R G +
Sbjct: 7 NVEYDPDQFPGLI-FRLESPKVTSLIFKSGKMVVTGAKSTEELIKAVKRIIKSLRRYGIR 65
Query: 128 ARFT-NFRVVNVLGTCSMPFAIRILQFSEKHRAAEYEPELHPGVTYRITRPKATLKIFST 186
++ N++ + +M + + + + YEPE PG+ +R+ P+ L IFS+
Sbjct: 66 IGGKPKIQIQNIVASANMHVHVNLDKAAFLLENNMYEPEQFPGLIFRMDDPRVVLLIFSS 125
Query: 187 GGITVTACNDSNKI 200
G + +T +++
Sbjct: 126 GKMVITGAKREDEV 139
Score = 41.6 bits (96), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 42/83 (50%), Gaps = 3/83 (3%)
Query: 44 IIINNVVCSFSVRCHLNLRQIALNGVNVEYRREN--GMVTMKLRKPYTTASIWSSGKITC 101
I I N+V S ++ H+NL + A N Y E G++ ++ P I+SSGK+
Sbjct: 72 IQIQNIVASANMHVHVNLDKAAFLLENNMYEPEQFPGLI-FRMDDPRVVLLIFSSGKMVI 130
Query: 102 TGATSEDQSKIAARRYARCLQRL 124
TGA ED+ A ++ L+ L
Sbjct: 131 TGAKREDEVYRAVKKIFDKLESL 153
>gi|313126218|ref|YP_004036488.1| tata binding protein of transcription factor tfiid [Halogeometricum
borinquense DSM 11551]
gi|448286060|ref|ZP_21477295.1| transcription factor [Halogeometricum borinquense DSM 11551]
gi|312292583|gb|ADQ67043.1| TATA binding protein of transcription factor TFIID [Halogeometricum
borinquense DSM 11551]
gi|445575111|gb|ELY29590.1| transcription factor [Halogeometricum borinquense DSM 11551]
Length = 186
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 73/165 (44%), Gaps = 6/165 (3%)
Query: 40 PEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYRREN--GMVTMKLRKPYTTASIWSSG 97
P I I NVV S + L+L +A + ++ +N G+V + + P A I+ SG
Sbjct: 4 PADSIEIQNVVASTGIGQELDLEALADDLPGADFNPDNFPGLV-YRTQDPKAAALIFRSG 62
Query: 98 KITCTGATSEDQSKIAARRYARCLQRLGFKARFT-NFRVVNVLGTCSMPFAIRI--LQFS 154
KI CTGA S D A L+ L V N++ + + + + L
Sbjct: 63 KIVCTGAKSIDDVHEALGIIFDKLRGLSIPVDEDPEITVQNIVSSADLGHNLNLNALAIG 122
Query: 155 EKHRAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTACNDSNK 199
EYEPE PG+ YR+ P+ + +F +G I +T +N
Sbjct: 123 LGLEDVEYEPEQFPGLVYRMDEPEVVILLFGSGKIVITGGKQTND 167
Score = 43.1 bits (100), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 48/96 (50%), Gaps = 7/96 (7%)
Query: 35 PPAHDPEVDIIINNVVCSFSVRCHLNLRQIALN-GV-NVEYRREN--GMVTMKLRKPYTT 90
P DPE I + N+V S + +LNL +A+ G+ +VEY E G+V ++ +P
Sbjct: 92 PVDEDPE--ITVQNIVSSADLGHNLNLNALAIGLGLEDVEYEPEQFPGLV-YRMDEPEVV 148
Query: 91 ASIWSSGKITCTGATSEDQSKIAARRYARCLQRLGF 126
++ SGKI TG + ++ A + + LG
Sbjct: 149 ILLFGSGKIVITGGKQTNDAETAVEEIVKRIDNLGL 184
>gi|448576280|ref|ZP_21642323.1| transcription factor [Haloferax larsenii JCM 13917]
gi|448591579|ref|ZP_21651067.1| transcription factor [Haloferax elongans ATCC BAA-1513]
gi|445729960|gb|ELZ81554.1| transcription factor [Haloferax larsenii JCM 13917]
gi|445733553|gb|ELZ85122.1| transcription factor [Haloferax elongans ATCC BAA-1513]
Length = 186
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/159 (29%), Positives = 71/159 (44%), Gaps = 6/159 (3%)
Query: 40 PEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYRREN--GMVTMKLRKPYTTASIWSSG 97
P I I NVV S + L+L +A + ++ +N G+V + + P A I+ SG
Sbjct: 4 PADSIEIQNVVASTGIGQELDLEALADDLPGADFNPDNFPGLV-YRTQDPKAAALIFRSG 62
Query: 98 KITCTGATSEDQSKIAARRYARCLQRLGFKARFT-NFRVVNVLGTCSMPFAIRI--LQFS 154
KI CTGA S D A L+ L V N++ + + + + L
Sbjct: 63 KIVCTGAKSIDDVHEALGIIFDKLRELKIPVDDEPEITVQNIVSSADLGHNLNLNALAIG 122
Query: 155 EKHRAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTA 193
EYEPE PG+ YR+ PK + +F +G I +T
Sbjct: 123 LGLEDVEYEPEQFPGLVYRMDEPKVVILLFGSGKIVITG 161
Score = 42.7 bits (99), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 46/92 (50%), Gaps = 5/92 (5%)
Query: 39 DPEVDIIINNVVCSFSVRCHLNLRQIALN-GV-NVEYRREN--GMVTMKLRKPYTTASIW 94
D E +I + N+V S + +LNL +A+ G+ +VEY E G+V ++ +P ++
Sbjct: 94 DDEPEITVQNIVSSADLGHNLNLNALAIGLGLEDVEYEPEQFPGLV-YRMDEPKVVILLF 152
Query: 95 SSGKITCTGATSEDQSKIAARRYARCLQRLGF 126
SGKI TG D ++ A + LG
Sbjct: 153 GSGKIVITGGKRTDDAETAVEEIVERIDALGL 184
>gi|6573566|pdb|1D3U|A Chain A, Tata-Binding ProteinTRANSCRIPTION FACTOR (II)BBRE+TATA-
Box Complex From Pyrococcus Woesei
Length = 181
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/158 (30%), Positives = 78/158 (49%), Gaps = 8/158 (5%)
Query: 41 EVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYRREN--GMVTMKLRKPYTTASIWSSGK 98
+V + I N+V S + L+L ++ N +Y E G++ L P I+SSGK
Sbjct: 6 KVKLRIENIVASVDLFAQLDLEKVLDLCPNSKYNPEEFPGIIC-HLDDPKVALLIFSSGK 64
Query: 99 ITCTGATSEDQSKIAARRYARCLQRLGFK-ARFTNFRVVNVL--GTCSMPFAIRILQFSE 155
+ TGA S + A + A+ L+ +G K R V N++ G F + ++ +
Sbjct: 65 LVVTGAKSVQDIERAVAKLAQKLKSIGVKFKRAPQIDVQNMVFSGDIGREFNLDVVALTL 124
Query: 156 KHRAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTA 193
+ EYEPE PGV YR+ PK+ + +FS+G I +
Sbjct: 125 PN--CEYEPEQFPGVIYRVKEPKSVILLFSSGKIVCSG 160
Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 46/85 (54%), Gaps = 3/85 (3%)
Query: 40 PEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYRRENG-MVTMKLRKPYTTASIWSSGK 98
P++D+ N+V S + NL +AL N EY E V ++++P + ++SSGK
Sbjct: 98 PQIDV--QNMVFSGDIGREFNLDVVALTLPNCEYEPEQFPGVIYRVKEPKSVILLFSSGK 155
Query: 99 ITCTGATSEDQSKIAARRYARCLQR 123
I C+GA SE + A R+ R L +
Sbjct: 156 IVCSGAKSEADAWEAVRKLLRELDK 180
>gi|18977667|ref|NP_579024.1| transcription factor [Pyrococcus furiosus DSM 3638]
gi|397651790|ref|YP_006492371.1| transcription factor [Pyrococcus furiosus COM1]
gi|48429154|sp|P62000.1|TBP_PYRFU RecName: Full=TATA-box-binding protein; AltName: Full=Box A-binding
protein; Short=BAP; AltName: Full=TATA sequence-binding
protein; Short=TBP; AltName: Full=TATA-box factor
gi|48429155|sp|P62001.1|TBP_PYRWO RecName: Full=TATA-box-binding protein; AltName: Full=Box A-binding
protein; Short=BAP; AltName: Full=TATA sequence-binding
protein; Short=TBP; AltName: Full=TATA-box factor
gi|1942573|pdb|1PCZ|A Chain A, Structure Of Tata-Binding Protein
gi|1942574|pdb|1PCZ|B Chain B, Structure Of Tata-Binding Protein
gi|498649|gb|AAA73447.1| TATA-binding protein [Pyrococcus woesei]
gi|1245168|gb|AAA93368.1| TATA-box binding protein [Pyrococcus furiosus]
gi|18893395|gb|AAL81419.1| transcription initiation factor TFIID (TATA-box factor) chain a
(TATA sequence-binding protein) (tbp) [Pyrococcus
furiosus DSM 3638]
gi|393189381|gb|AFN04079.1| transcription factor [Pyrococcus furiosus COM1]
Length = 191
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/158 (30%), Positives = 78/158 (49%), Gaps = 8/158 (5%)
Query: 41 EVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYRREN--GMVTMKLRKPYTTASIWSSGK 98
+V + I N+V S + L+L ++ N +Y E G++ L P I+SSGK
Sbjct: 6 KVKLRIENIVASVDLFAQLDLEKVLDLCPNSKYNPEEFPGIIC-HLDDPKVALLIFSSGK 64
Query: 99 ITCTGATSEDQSKIAARRYARCLQRLGFK-ARFTNFRVVNVL--GTCSMPFAIRILQFSE 155
+ TGA S + A + A+ L+ +G K R V N++ G F + ++ +
Sbjct: 65 LVVTGAKSVQDIERAVAKLAQKLKSIGVKFKRAPQIDVQNMVFSGDIGREFNLDVVALTL 124
Query: 156 KHRAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTA 193
+ EYEPE PGV YR+ PK+ + +FS+G I +
Sbjct: 125 PN--CEYEPEQFPGVIYRVKEPKSVILLFSSGKIVCSG 160
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 47/87 (54%), Gaps = 3/87 (3%)
Query: 40 PEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYRRENG-MVTMKLRKPYTTASIWSSGK 98
P++D+ N+V S + NL +AL N EY E V ++++P + ++SSGK
Sbjct: 98 PQIDV--QNMVFSGDIGREFNLDVVALTLPNCEYEPEQFPGVIYRVKEPKSVILLFSSGK 155
Query: 99 ITCTGATSEDQSKIAARRYARCLQRLG 125
I C+GA SE + A R+ R L + G
Sbjct: 156 IVCSGAKSEADAWEAVRKLLRELDKYG 182
>gi|91773461|ref|YP_566153.1| transcription factor [Methanococcoides burtonii DSM 6242]
gi|91712476|gb|ABE52403.1| TATA-box binding protein [Methanococcoides burtonii DSM 6242]
Length = 206
Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/158 (28%), Positives = 73/158 (46%), Gaps = 6/158 (3%)
Query: 41 EVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYRREN--GMVTMKLRKPYTTASIWSSGK 98
E +I I NVV S + +L +I EY ++ G+V ++ P +++SGK
Sbjct: 26 EYNIKIENVVASTKLAEEFDLIKIEAEFEGAEYNKQKFPGLV-YRVTDPKAAFLVFTSGK 84
Query: 99 ITCTGATSEDQSKIAARRYARCLQRLGFKARFT-NFRVVNVLGTCSMPFAIRI--LQFSE 155
+ CTGA + I A+ L +G + V N++ + + + + +
Sbjct: 85 VVCTGAKNVADVHIVIGNMAKKLNGIGIETIADPEITVQNIVASADLHATLNLNAIAIGL 144
Query: 156 KHRAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTA 193
EYEPE PG+ YRI PK + IFS+G + VT
Sbjct: 145 GLENIEYEPEQFPGLVYRIADPKVVVLIFSSGKLVVTG 182
Score = 45.8 bits (107), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 18/73 (24%), Positives = 37/73 (50%)
Query: 132 NFRVVNVLGTCSMPFAIRILQFSEKHRAAEYEPELHPGVTYRITRPKATLKIFSTGGITV 191
N ++ NV+ + + +++ + AEY + PG+ YR+T PKA +F++G +
Sbjct: 28 NIKIENVVASTKLAEEFDLIKIEAEFEGAEYNKQKFPGLVYRVTDPKAAFLVFTSGKVVC 87
Query: 192 TACNDSNKIPVQI 204
T + + + I
Sbjct: 88 TGAKNVADVHIVI 100
Score = 39.7 bits (91), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 39/72 (54%), Gaps = 7/72 (9%)
Query: 39 DPEVDIIINNVVCSFSVRCHLNLRQIALN-GV-NVEYRREN--GMVTMKLRKPYTTASIW 94
DPE I + N+V S + LNL IA+ G+ N+EY E G+V ++ P I+
Sbjct: 117 DPE--ITVQNIVASADLHATLNLNAIAIGLGLENIEYEPEQFPGLV-YRIADPKVVVLIF 173
Query: 95 SSGKITCTGATS 106
SSGK+ TG S
Sbjct: 174 SSGKLVVTGGKS 185
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.319 0.132 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,283,944,065
Number of Sequences: 23463169
Number of extensions: 125894073
Number of successful extensions: 455715
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 1102
Number of HSP's successfully gapped in prelim test: 117
Number of HSP's that attempted gapping in prelim test: 450620
Number of HSP's gapped (non-prelim): 2421
length of query: 204
length of database: 8,064,228,071
effective HSP length: 136
effective length of query: 68
effective length of database: 9,168,204,383
effective search space: 623437898044
effective search space used: 623437898044
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 73 (32.7 bits)