BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9199
(204 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1VOK|A Chain A, Arabidopsis Thaliana Tbp (Dimer)
pdb|1VOK|B Chain B, Arabidopsis Thaliana Tbp (Dimer)
pdb|1VOL|B Chain B, Tfiib (Human Core Domain)TBP (A.THALIANA)TATA ELEMENT
Ternary Complex
pdb|1QN5|A Chain A, Crystal Structure Of The G(-26) Adenovirus Major Late
Promoter Tata Box Variant Bound To Wild-Type Tbp
(Arabidopsis Thaliana Tbp Isoform 2). Tata Element
Recognition By The Tata Box-Binding Protein Has Been
Conserved Throughout Evolution.
pdb|1QN5|B Chain B, Crystal Structure Of The G(-26) Adenovirus Major Late
Promoter Tata Box Variant Bound To Wild-Type Tbp
(Arabidopsis Thaliana Tbp Isoform 2). Tata Element
Recognition By The Tata Box-Binding Protein Has Been
Conserved Throughout Evolution.
pdb|1QN6|A Chain A, Crystal Structure Of The T(-26) Adenovirus Major Late
Promoter Tata Box Variant Bound To Wild-Type Tbp
(Arabidopsis Thaliana Tbp Isoform 2). Tata Element
Recognition By The Tata Box-Binding Protein Has Been
Conserved Throughout Evolution.
pdb|1QN6|B Chain B, Crystal Structure Of The T(-26) Adenovirus Major Late
Promoter Tata Box Variant Bound To Wild-Type Tbp
(Arabidopsis Thaliana Tbp Isoform 2). Tata Element
Recognition By The Tata Box-Binding Protein Has Been
Conserved Throughout Evolution.
pdb|1QN7|A Chain A, Crystal Structure Of The T(-27) Adenovirus Major Late
Promoter Tata Box Variant Bound To Wild-Type Tbp
(Arabidopsis Thaliana Tbp Isoform 2). Tata Element
Recognition By The Tata Box-Binding Protein Has Been
Conserved Throughout Evolution.
pdb|1QN7|B Chain B, Crystal Structure Of The T(-27) Adenovirus Major Late
Promoter Tata Box Variant Bound To Wild-Type Tbp
(Arabidopsis Thaliana Tbp Isoform 2). Tata Element
Recognition By The Tata Box-Binding Protein Has Been
Conserved Throughout Evolution.
pdb|1QN8|A Chain A, Crystal Structure Of The T(-28) Adenovirus Major Late
Promoter Tata Box Variant Bound To Wild-Type Tbp
(Arabidopsis Thaliana Tbp Isoform 2). Tata Element
Recognition By The Tata Box-Binding Protein Has Been
Conserved Throughout Evolution.
pdb|1QN8|B Chain B, Crystal Structure Of The T(-28) Adenovirus Major Late
Promoter Tata Box Variant Bound To Wild-Type Tbp
(Arabidopsis Thaliana Tbp Isoform 2). Tata Element
Recognition By The Tata Box-Binding Protein Has Been
Conserved Throughout Evolution.
pdb|1QN9|A Chain A, Crystal Structure Of The C(-29) Adenovirus Major Late
Promoter Tata Box Variant Bound To Wild-Type Tbp
(Arabidopsis Thaliana Tbp Isoform 2). Tata Element
Recognition By The Tata Box-Binding Protein Has Been
Conserved Throughout Evolution.
pdb|1QN9|B Chain B, Crystal Structure Of The C(-29) Adenovirus Major Late
Promoter Tata Box Variant Bound To Wild-Type Tbp
(Arabidopsis Thaliana Tbp Isoform 2). Tata Element
Recognition By The Tata Box-Binding Protein Has Been
Conserved Throughout Evolution.
pdb|1QNA|A Chain A, Crystal Structure Of The T(-30) Adenovirus Major Late
Promoter Tata Box Variant Bound To Wild-Type Tbp
(Arabidopsis Thaliana Tbp Isoform 2). Tata Element
Recognition By The Tata Box-Binding Protein Has Been
Conserved Throughout Evolution.
pdb|1QNA|B Chain B, Crystal Structure Of The T(-30) Adenovirus Major Late
Promoter Tata Box Variant Bound To Wild-Type Tbp
(Arabidopsis Thaliana Tbp Isoform 2). Tata Element
Recognition By The Tata Box-Binding Protein Has Been
Conserved Throughout Evolution.
pdb|1QNB|A Chain A, Crystal Structure Of The T(-25) Adenovirus Major Late
Promoter Tata Box Variant Bound To Wild-Type Tbp
(Arabidopsis Thaliana Tbp Isoform 2). Tata Element
Recognition By The Tata Box-Binding Protein Has Been
Conserved Throughout Evolution.
pdb|1QNB|B Chain B, Crystal Structure Of The T(-25) Adenovirus Major Late
Promoter Tata Box Variant Bound To Wild-Type Tbp
(Arabidopsis Thaliana Tbp Isoform 2). Tata Element
Recognition By The Tata Box-Binding Protein Has Been
Conserved Throughout Evolution.
pdb|1QNC|A Chain A, Crystal Structure Of The A(-31) Adenovirus Major Late
Promoter Tata Box Variant Bound To Wild-Type Tbp
(Arabidopsis Thaliana Tbp Isoform 2). Tata Element
Recognition By The Tata Box-Binding Protein Has Been
Conserved Throughout Evolution.
pdb|1QNC|B Chain B, Crystal Structure Of The A(-31) Adenovirus Major Late
Promoter Tata Box Variant Bound To Wild-Type Tbp
(Arabidopsis Thaliana Tbp Isoform 2). Tata Element
Recognition By The Tata Box-Binding Protein Has Been
Conserved Throughout Evolution.
pdb|1QNE|A Chain A, Crystal Structure Of The Adenovirus Major Late Promoter
Tata Box Bound To Wild-Type Tbp (Arabidopsis Thaliana
Tbp Isoform 2).
pdb|1QNE|B Chain B, Crystal Structure Of The Adenovirus Major Late Promoter
Tata Box Bound To Wild-Type Tbp (Arabidopsis Thaliana
Tbp Isoform 2).
pdb|1QN3|A Chain A, Crystal Structure Of The C(-25) Adenovirus Major Late
Promoter Tata Box Variant Bound To Wild-Type Tbp
(Arabidopsis Thaliana Tbp Isoform 2). Tata Element
Recognition By The Tata Box-Binding Protein Has Been
Conserved Throughout Evolution.
pdb|1QN3|B Chain B, Crystal Structure Of The C(-25) Adenovirus Major Late
Promoter Tata Box Variant Bound To Wild-Type Tbp
(Arabidopsis Thaliana Tbp Isoform 2). Tata Element
Recognition By The Tata Box-Binding Protein Has Been
Conserved Throughout Evolution.
pdb|1QN4|A Chain A, Crystal Structure Of The T(-24) Adenovirus Major Late
Promoter Tata Box Variant Bound To Wild-Type Tbp
(Arabidopsis Thaliana Tbp Isoform 2). Tata Element
Recognition By The Tata Box-Binding Protein Has Been
Conserved Throughout Evolution.
pdb|1QN4|B Chain B, Crystal Structure Of The T(-24) Adenovirus Major Late
Promoter Tata Box Variant Bound To Wild-Type Tbp
(Arabidopsis Thaliana Tbp Isoform 2). Tata Element
Recognition By The Tata Box-Binding Protein Has Been
Conserved Throughout Evolution
Length = 200
Score = 147 bits (372), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 69/152 (45%), Positives = 102/152 (67%), Gaps = 2/152 (1%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGA 104
+ N+V + ++ C L+L+ IAL N EY + V M++R+P TTA I++SGK+ CTGA
Sbjct: 25 LQNIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVCTGA 84
Query: 105 TSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKHRA-AEYE 163
SED SK+AAR+YAR +Q+LGF A+F +F++ N++G+C + F IR+ + H A + YE
Sbjct: 85 KSEDFSKMAARKYARIVQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHAAFSSYE 144
Query: 164 PELHPGVTYRITRPKATLKIFSTGGITVTACN 195
PEL PG+ YR+ PK L IF +G I +T
Sbjct: 145 PELFPGLIYRMKVPKIVLLIFVSGKIVITGAK 176
Score = 34.7 bits (78), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 30/62 (48%)
Query: 137 NVLGTCSMPFAIRILQFSEKHRAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTACND 196
N++ T ++ + + + + R AEY P+ V RI PK T IF++G + T
Sbjct: 27 NIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVCTGAKS 86
Query: 197 SN 198
+
Sbjct: 87 ED 88
>pdb|1VTO|A Chain A, 1.9 A Resolution Refined Structure Of Tbp Recognizing The
Minor Groove Of Tataaaag
pdb|1VTO|B Chain B, 1.9 A Resolution Refined Structure Of Tbp Recognizing The
Minor Groove Of Tataaaag
Length = 190
Score = 147 bits (372), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 69/152 (45%), Positives = 102/152 (67%), Gaps = 2/152 (1%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGA 104
+ N+V + ++ C L+L+ IAL N EY + V M++R+P TTA I++SGK+ CTGA
Sbjct: 15 LQNIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVCTGA 74
Query: 105 TSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKHRA-AEYE 163
SED SK+AAR+YAR +Q+LGF A+F +F++ N++G+C + F IR+ + H A + YE
Sbjct: 75 KSEDFSKMAARKYARIVQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHAAFSSYE 134
Query: 164 PELHPGVTYRITRPKATLKIFSTGGITVTACN 195
PEL PG+ YR+ PK L IF +G I +T
Sbjct: 135 PELFPGLIYRMKVPKIVLLIFVSGKIVITGAK 166
Score = 34.7 bits (78), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 30/62 (48%)
Query: 137 NVLGTCSMPFAIRILQFSEKHRAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTACND 196
N++ T ++ + + + + R AEY P+ V RI PK T IF++G + T
Sbjct: 17 NIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVCTGAKS 76
Query: 197 SN 198
+
Sbjct: 77 ED 78
>pdb|1VTL|E Chain E, Co-Crystal Structure Of Tbp Recognizing The Minor Groove
Of A Tata Element
pdb|1VTL|F Chain F, Co-Crystal Structure Of Tbp Recognizing The Minor Groove
Of A Tata Element
Length = 186
Score = 147 bits (371), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 69/152 (45%), Positives = 102/152 (67%), Gaps = 2/152 (1%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGA 104
+ N+V + ++ C L+L+ IAL N EY + V M++R+P TTA I++SGK+ CTGA
Sbjct: 13 LQNIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVCTGA 72
Query: 105 TSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKHRA-AEYE 163
SED SK+AAR+YAR +Q+LGF A+F +F++ N++G+C + F IR+ + H A + YE
Sbjct: 73 KSEDFSKMAARKYARIVQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHAAFSSYE 132
Query: 164 PELHPGVTYRITRPKATLKIFSTGGITVTACN 195
PEL PG+ YR+ PK L IF +G I +T
Sbjct: 133 PELFPGLIYRMKVPKIVLLIFVSGKIVITGAK 164
Score = 34.7 bits (78), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 30/62 (48%)
Query: 137 NVLGTCSMPFAIRILQFSEKHRAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTACND 196
N++ T ++ + + + + R AEY P+ V RI PK T IF++G + T
Sbjct: 15 NIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVCTGAKS 74
Query: 197 SN 198
+
Sbjct: 75 ED 76
>pdb|1RM1|A Chain A, Structure Of A Yeast TfiiaTBPTATA-Box Dna Complex
Length = 240
Score = 145 bits (367), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 66/157 (42%), Positives = 105/157 (66%), Gaps = 2/157 (1%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGA 104
+ N+V + ++ C L+L+ +AL+ N EY + V M++R+P TTA I++SGK+ TGA
Sbjct: 67 LQNIVATVTLGCRLDLKTVALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGA 126
Query: 105 TSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKHRA-AEYE 163
SED SK+A+R+YAR +Q++GF A+FT+F++ N++G+C + F IR+ + H + YE
Sbjct: 127 KSEDDSKLASRKYARIIQKIGFAAKFTDFKIQNIVGSCDVKFPIRLEGLAFSHGTFSSYE 186
Query: 164 PELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
PEL PG+ YR+ +PK L IF +G I +T +I
Sbjct: 187 PELFPGLIYRMVKPKIVLLIFVSGKIVLTGAKQREEI 223
>pdb|1TBP|A Chain A, Crystal Structure Of Yeast Tata-Binding Protein And Model
For Interaction With Dna
pdb|1TBP|B Chain B, Crystal Structure Of Yeast Tata-Binding Protein And Model
For Interaction With Dna
Length = 180
Score = 145 bits (367), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 66/157 (42%), Positives = 105/157 (66%), Gaps = 2/157 (1%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGA 104
+ N+V + ++ C L+L+ +AL+ N EY + V M++R+P TTA I++SGK+ TGA
Sbjct: 7 LQNIVATVTLGCRLDLKTVALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGA 66
Query: 105 TSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKHRA-AEYE 163
SED SK+A+R+YAR +Q++GF A+FT+F++ N++G+C + F IR+ + H + YE
Sbjct: 67 KSEDDSKLASRKYARIIQKIGFAAKFTDFKIQNIVGSCDVKFPIRLEGLAFSHGTFSSYE 126
Query: 164 PELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
PEL PG+ YR+ +PK L IF +G I +T +I
Sbjct: 127 PELFPGLIYRMVKPKIVLLIFVSGKIVLTGAKQREEI 163
>pdb|1YTB|A Chain A, Crystal Structure Of A Yeast TbpTATA-Box Complex
pdb|1YTB|B Chain B, Crystal Structure Of A Yeast TbpTATA-Box Complex
pdb|1YTF|A Chain A, Yeast TfiiaTBPDNA COMPLEX
pdb|1TBA|B Chain B, Solution Structure Of A Tbp-Tafii230 Complex: Protein
Mimicry Of The Minor Groove Surface Of The Tata Box
Unwound By Tbp, Nmr, 25 Structures
pdb|1NGM|A Chain A, Crystal Structure Of A Yeast Brf1-Tbp-Dna Ternary Complex
pdb|1NGM|E Chain E, Crystal Structure Of A Yeast Brf1-Tbp-Dna Ternary Complex
pdb|1NGM|I Chain I, Crystal Structure Of A Yeast Brf1-Tbp-Dna Ternary Complex
pdb|1NGM|M Chain M, Crystal Structure Of A Yeast Brf1-Tbp-Dna Ternary Complex
pdb|1NH2|A Chain A, Crystal Structure Of A Yeast TfiiaTBPDNA COMPLEX
Length = 180
Score = 145 bits (366), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 66/157 (42%), Positives = 105/157 (66%), Gaps = 2/157 (1%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGA 104
+ N+V + ++ C L+L+ +AL+ N EY + V M++R+P TTA I++SGK+ TGA
Sbjct: 7 LQNIVATVTLGCRLDLKTVALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGA 66
Query: 105 TSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKHRA-AEYE 163
SED SK+A+R+YAR +Q++GF A+FT+F++ N++G+C + F IR+ + H + YE
Sbjct: 67 KSEDDSKLASRKYARIIQKIGFAAKFTDFKIQNIVGSCDVKFPIRLEGLAFSHGTFSSYE 126
Query: 164 PELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
PEL PG+ YR+ +PK L IF +G I +T +I
Sbjct: 127 PELFPGLIYRMVKPKIVLLIFVSGKIVLTGAKQREEI 163
>pdb|1JFI|C Chain C, Crystal Structure Of The Nc2-Tbp-Dna Ternary Complex
Length = 185
Score = 142 bits (359), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 67/157 (42%), Positives = 105/157 (66%), Gaps = 2/157 (1%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGA 104
+ N+V + ++ C L+L+ IAL N EY + V M++R+P TTA I+SSGK+ CTGA
Sbjct: 11 LQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 70
Query: 105 TSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKHRA-AEYE 163
SE+QS++AAR+YAR +Q+LGF A+F +F++ N++G+C + F IR+ H+ + YE
Sbjct: 71 KSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSYE 130
Query: 164 PELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
PEL PG+ YR+ +P+ L IF +G + +T +I
Sbjct: 131 PELFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRAEI 167
>pdb|1NVP|A Chain A, Human TfiiaTBPDNA COMPLEX
Length = 181
Score = 142 bits (359), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 67/157 (42%), Positives = 105/157 (66%), Gaps = 2/157 (1%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGA 104
+ N+V + ++ C L+L+ IAL N EY + V M++R+P TTA I+SSGK+ CTGA
Sbjct: 7 LQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 66
Query: 105 TSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKHRA-AEYE 163
SE+QS++AAR+YAR +Q+LGF A+F +F++ N++G+C + F IR+ H+ + YE
Sbjct: 67 KSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSYE 126
Query: 164 PELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
PEL PG+ YR+ +P+ L IF +G + +T +I
Sbjct: 127 PELFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRAEI 163
>pdb|1C9B|B Chain B, Crystal Structure Of A Human Tbp Core Domain-Human Tfiib
Core Domain Complex Bound To An Extended, Modified
Adenoviral Major Late Promoter (Admlp)
pdb|1C9B|F Chain F, Crystal Structure Of A Human Tbp Core Domain-Human Tfiib
Core Domain Complex Bound To An Extended, Modified
Adenoviral Major Late Promoter (Admlp)
pdb|1C9B|J Chain J, Crystal Structure Of A Human Tbp Core Domain-Human Tfiib
Core Domain Complex Bound To An Extended, Modified
Adenoviral Major Late Promoter (Admlp)
pdb|1C9B|N Chain N, Crystal Structure Of A Human Tbp Core Domain-Human Tfiib
Core Domain Complex Bound To An Extended, Modified
Adenoviral Major Late Promoter (Admlp)
pdb|1C9B|R Chain R, Crystal Structure Of A Human Tbp Core Domain-Human Tfiib
Core Domain Complex Bound To An Extended, Modified
Adenoviral Major Late Promoter (Admlp)
Length = 180
Score = 142 bits (359), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 66/152 (43%), Positives = 103/152 (67%), Gaps = 2/152 (1%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGA 104
+ N+V + ++ C L+L+ IAL N EY + V M++R+P TTA I+SSGK+ CTGA
Sbjct: 8 LQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 67
Query: 105 TSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKHRA-AEYE 163
SE+QS++AAR+YAR +Q+LGF A+F +F++ N++G+C + F IR+ H+ + YE
Sbjct: 68 KSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSYE 127
Query: 164 PELHPGVTYRITRPKATLKIFSTGGITVTACN 195
PEL PG+ YR+ +P+ L IF +G + +T
Sbjct: 128 PELFPGLIYRMIKPRIVLLIFVSGKVVLTGAK 159
Score = 33.9 bits (76), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 30/63 (47%)
Query: 137 NVLGTCSMPFAIRILQFSEKHRAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTACND 196
N++ T ++ + + + + R AEY P+ V RI P+ T IFS+G + T
Sbjct: 10 NIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKS 69
Query: 197 SNK 199
+
Sbjct: 70 EEQ 72
>pdb|1TGH|A Chain A, Tata Binding Protein (Tbp)DNA COMPLEX
Length = 185
Score = 142 bits (358), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 66/152 (43%), Positives = 103/152 (67%), Gaps = 2/152 (1%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGA 104
+ N+V + ++ C L+L+ IAL N EY + V M++R+P TTA I+SSGK+ CTGA
Sbjct: 11 LQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 70
Query: 105 TSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKHRA-AEYE 163
SE+QS++AAR+YAR +Q+LGF A+F +F++ N++G+C + F IR+ H+ + YE
Sbjct: 71 KSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSYE 130
Query: 164 PELHPGVTYRITRPKATLKIFSTGGITVTACN 195
PEL PG+ YR+ +P+ L IF +G + +T
Sbjct: 131 PELFPGLIYRMIKPRIVLLIFVSGKVVLTGAK 162
Score = 33.9 bits (76), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 30/63 (47%)
Query: 137 NVLGTCSMPFAIRILQFSEKHRAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTACND 196
N++ T ++ + + + + R AEY P+ V RI P+ T IFS+G + T
Sbjct: 13 NIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKS 72
Query: 197 SNK 199
+
Sbjct: 73 EEQ 75
>pdb|1CDW|A Chain A, Human Tbp Core Domain Complexed With Dna
Length = 179
Score = 140 bits (353), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 65/152 (42%), Positives = 102/152 (67%), Gaps = 2/152 (1%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGA 104
+ N+V + ++ C L+L+ IAL N EY + V M++R+P TTA I+SSGK+ CTGA
Sbjct: 7 LQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 66
Query: 105 TSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKHRA-AEYE 163
SE+ S++AAR+YAR +Q+LGF A+F +F++ N++G+C + F IR+ H+ + YE
Sbjct: 67 KSEENSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSYE 126
Query: 164 PELHPGVTYRITRPKATLKIFSTGGITVTACN 195
PEL PG+ YR+ +P+ L IF +G + +T
Sbjct: 127 PELFPGLIYRMIKPRIVLLIFVSGKVVLTGAK 158
>pdb|3OC3|C Chain C, Crystal Structure Of The Mot1 N-Terminal Domain In Complex
With Tbp
pdb|3OC3|D Chain D, Crystal Structure Of The Mot1 N-Terminal Domain In Complex
With Tbp
pdb|3OCI|A Chain A, Crystal Structure Of Tbp (Tata Box Binding Protein)
pdb|3OCI|B Chain B, Crystal Structure Of Tbp (Tata Box Binding Protein)
Length = 218
Score = 134 bits (337), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 64/157 (40%), Positives = 99/157 (63%), Gaps = 2/157 (1%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGA 104
+ NVV + ++ C L+L+ IAL N EY + V M++R+P TTA I++SGK+ TGA
Sbjct: 45 LQNVVATVNLSCKLDLKNIALRARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVITGA 104
Query: 105 TSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKH-RAAEYE 163
SE S++AA+RYA+ + +LGF A F +F++ N++ +C + F+IR+ + H YE
Sbjct: 105 KSEKSSRMAAQRYAKIIHKLGFNATFDDFKIQNIVSSCDIKFSIRLEGLAYAHSNYCSYE 164
Query: 164 PELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
PEL PG+ YR+ +PK L IF +G I +T + I
Sbjct: 165 PELFPGLIYRMVKPKIVLLIFVSGKIVLTGAKVRDDI 201
Score = 28.9 bits (63), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 32/70 (45%), Gaps = 4/70 (5%)
Query: 43 DIIINNVVCSFSVRCHLNLRQIAL---NGVNVEYRRENGMVTMKLRKPYTTASIWSSGKI 99
D I N+V S ++ + L +A N + E G++ ++ KP I+ SGKI
Sbjct: 132 DFKIQNIVSSCDIKFSIRLEGLAYAHSNYCSYEPELFPGLI-YRMVKPKIVLLIFVSGKI 190
Query: 100 TCTGATSEDQ 109
TGA D
Sbjct: 191 VLTGAKVRDD 200
>pdb|3EIK|A Chain A, Double Stranded Dna Binding Protein
pdb|3EIK|B Chain B, Double Stranded Dna Binding Protein
Length = 218
Score = 134 bits (337), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 64/157 (40%), Positives = 99/157 (63%), Gaps = 2/157 (1%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGA 104
+ NVV + ++ C L+L+ IAL N EY + V M++R+P TTA I++SGK+ TGA
Sbjct: 45 LQNVVATVNLSCKLDLKNIALRARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVITGA 104
Query: 105 TSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKH-RAAEYE 163
SE S++AA+RYA+ + +LGF A F +F++ N++ +C + F+IR+ + H YE
Sbjct: 105 KSEKSSRMAAQRYAKIIHKLGFNATFDDFKIQNIVSSCDIKFSIRLEGLAYAHSNYCSYE 164
Query: 164 PELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
PEL PG+ YR+ +PK L IF +G I +T + I
Sbjct: 165 PELFPGLIYRMVKPKIVLLIFVSGKIVLTGAKVRDDI 201
Score = 28.9 bits (63), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 32/70 (45%), Gaps = 4/70 (5%)
Query: 43 DIIINNVVCSFSVRCHLNLRQIAL---NGVNVEYRRENGMVTMKLRKPYTTASIWSSGKI 99
D I N+V S ++ + L +A N + E G++ ++ KP I+ SGKI
Sbjct: 132 DFKIQNIVSSCDIKFSIRLEGLAYAHSNYCSYEPELFPGLI-YRMVKPKIVLLIFVSGKI 190
Query: 100 TCTGATSEDQ 109
TGA D
Sbjct: 191 VLTGAKVRDD 200
>pdb|2Z8U|A Chain A, Methanococcus Jannaschii Tbp
pdb|2Z8U|B Chain B, Methanococcus Jannaschii Tbp
pdb|2Z8U|P Chain P, Methanococcus Jannaschii Tbp
pdb|2Z8U|Q Chain Q, Methanococcus Jannaschii Tbp
Length = 188
Score = 84.3 bits (207), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 47/159 (29%), Positives = 83/159 (52%), Gaps = 6/159 (3%)
Query: 39 DPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYRREN--GMVTMKLRKPYTTASIWSS 96
+PE+ I+ NVV S + +++L ++A+ N EY E G+V +L P I+ S
Sbjct: 10 EPEIKIV--NVVVSTKIGDNIDLEEVAMILENAEYEPEQFPGLVC-RLSVPKVALLIFRS 66
Query: 97 GKITCTGATSEDQSKIAARRYARCLQRLGFKA-RFTNFRVVNVLGTCSMPFAIRILQFSE 155
GK+ CTGA S+++++IA ++ + L+ G ++ N++ T + + +
Sbjct: 67 GKVNCTGAKSKEEAEIAIKKIIKELKDAGIDVIENPEIKIQNMVATADLGIEPNLDDIAL 126
Query: 156 KHRAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTAC 194
EYEPE PG+ YR+ PK + IF +G + +T
Sbjct: 127 MVEGTEYEPEQFPGLVYRLDDPKVVVLIFGSGKVVITGL 165
Score = 40.8 bits (94), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 36/73 (49%)
Query: 132 NFRVVNVLGTCSMPFAIRILQFSEKHRAAEYEPELHPGVTYRITRPKATLKIFSTGGITV 191
++VNV+ + + I + + + AEYEPE PG+ R++ PK L IF +G +
Sbjct: 12 EIKIVNVVVSTKIGDNIDLEEVAMILENAEYEPEQFPGLVCRLSVPKVALLIFRSGKVNC 71
Query: 192 TACNDSNKIPVQI 204
T + + I
Sbjct: 72 TGAKSKEEAEIAI 84
Score = 40.4 bits (93), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 43/89 (48%), Gaps = 5/89 (5%)
Query: 38 HDPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYRREN--GMVTMKLRKPYTTASIWS 95
+PE+ I N+V + + NL IAL EY E G+V +L P I+
Sbjct: 100 ENPEIKI--QNMVATADLGIEPNLDDIALMVEGTEYEPEQFPGLV-YRLDDPKVVVLIFG 156
Query: 96 SGKITCTGATSEDQSKIAARRYARCLQRL 124
SGK+ TG SE+ +K A ++ ++ +
Sbjct: 157 SGKVVITGLKSEEDAKRALKKILDTIKEV 185
>pdb|1MP9|A Chain A, Tbp From A Mesothermophilic Archaeon, Sulfolobus
Acidocaldarius
pdb|1MP9|B Chain B, Tbp From A Mesothermophilic Archaeon, Sulfolobus
Acidocaldarius
Length = 198
Score = 73.6 bits (179), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 42/158 (26%), Positives = 82/158 (51%), Gaps = 4/158 (2%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYRREN--GMVTMKLRKPYTTASIWSSGKITCTG 103
I N+V + ++ L+L + + NVEY + G++ +L P T+ I+ SGK+ TG
Sbjct: 15 IENIVATVTLDQTLDLYAMERSVPNVEYDPDQFPGLI-FRLESPKITSLIFKSGKMVVTG 73
Query: 104 ATSEDQSKIAARRYARCLQRLGFKARFT-NFRVVNVLGTCSMPFAIRILQFSEKHRAAEY 162
A S D+ A +R + L++ G + ++ N++ + ++ + + + + Y
Sbjct: 74 AKSTDELIKAVKRIIKTLKKYGMQLTGKPKIQIQNIVASANLHVIVNLDKAAFLLENNMY 133
Query: 163 EPELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
EPE PG+ YR+ P+ L IFS+G + +T +++
Sbjct: 134 EPEQFPGLIYRMDEPRVVLLIFSSGKMVITGAKREDEV 171
Score = 37.4 bits (85), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 41/83 (49%), Gaps = 3/83 (3%)
Query: 44 IIINNVVCSFSVRCHLNLRQIALNGVNVEYRREN--GMVTMKLRKPYTTASIWSSGKITC 101
I I N+V S ++ +NL + A N Y E G++ ++ +P I+SSGK+
Sbjct: 104 IQIQNIVASANLHVIVNLDKAAFLLENNMYEPEQFPGLI-YRMDEPRVVLLIFSSGKMVI 162
Query: 102 TGATSEDQSKIAARRYARCLQRL 124
TGA ED+ A ++ L L
Sbjct: 163 TGAKREDEVHKAVKKIFDKLVEL 185
>pdb|1D3U|A Chain A, Tata-Binding ProteinTRANSCRIPTION FACTOR (II)BBRE+TATA-
Box Complex From Pyrococcus Woesei
Length = 181
Score = 65.1 bits (157), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 48/158 (30%), Positives = 78/158 (49%), Gaps = 8/158 (5%)
Query: 41 EVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYRREN--GMVTMKLRKPYTTASIWSSGK 98
+V + I N+V S + L+L ++ N +Y E G++ L P I+SSGK
Sbjct: 6 KVKLRIENIVASVDLFAQLDLEKVLDLCPNSKYNPEEFPGIIC-HLDDPKVALLIFSSGK 64
Query: 99 ITCTGATSEDQSKIAARRYARCLQRLGFK-ARFTNFRVVNVL--GTCSMPFAIRILQFSE 155
+ TGA S + A + A+ L+ +G K R V N++ G F + ++ +
Sbjct: 65 LVVTGAKSVQDIERAVAKLAQKLKSIGVKFKRAPQIDVQNMVFSGDIGREFNLDVVALTL 124
Query: 156 KHRAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTA 193
+ EYEPE PGV YR+ PK+ + +FS+G I +
Sbjct: 125 PN--CEYEPEQFPGVIYRVKEPKSVILLFSSGKIVCSG 160
Score = 47.0 bits (110), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 46/85 (54%), Gaps = 3/85 (3%)
Query: 40 PEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYRRENG-MVTMKLRKPYTTASIWSSGK 98
P++D+ N+V S + NL +AL N EY E V ++++P + ++SSGK
Sbjct: 98 PQIDV--QNMVFSGDIGREFNLDVVALTLPNCEYEPEQFPGVIYRVKEPKSVILLFSSGK 155
Query: 99 ITCTGATSEDQSKIAARRYARCLQR 123
I C+GA SE + A R+ R L +
Sbjct: 156 IVCSGAKSEADAWEAVRKLLRELDK 180
Score = 35.8 bits (81), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 17/70 (24%), Positives = 32/70 (45%)
Query: 131 TNFRVVNVLGTCSMPFAIRILQFSEKHRAAEYEPELHPGVTYRITRPKATLKIFSTGGIT 190
R+ N++ + + + + + + ++Y PE PG+ + PK L IFS+G +
Sbjct: 7 VKLRIENIVASVDLFAQLDLEKVLDLCPNSKYNPEEFPGIICHLDDPKVALLIFSSGKLV 66
Query: 191 VTACNDSNKI 200
VT I
Sbjct: 67 VTGAKSVQDI 76
>pdb|1PCZ|A Chain A, Structure Of Tata-Binding Protein
pdb|1PCZ|B Chain B, Structure Of Tata-Binding Protein
Length = 191
Score = 65.1 bits (157), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 48/158 (30%), Positives = 78/158 (49%), Gaps = 8/158 (5%)
Query: 41 EVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYRREN--GMVTMKLRKPYTTASIWSSGK 98
+V + I N+V S + L+L ++ N +Y E G++ L P I+SSGK
Sbjct: 6 KVKLRIENIVASVDLFAQLDLEKVLDLCPNSKYNPEEFPGIIC-HLDDPKVALLIFSSGK 64
Query: 99 ITCTGATSEDQSKIAARRYARCLQRLGFK-ARFTNFRVVNVL--GTCSMPFAIRILQFSE 155
+ TGA S + A + A+ L+ +G K R V N++ G F + ++ +
Sbjct: 65 LVVTGAKSVQDIERAVAKLAQKLKSIGVKFKRAPQIDVQNMVFSGDIGREFNLDVVALTL 124
Query: 156 KHRAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTA 193
+ EYEPE PGV YR+ PK+ + +FS+G I +
Sbjct: 125 PN--CEYEPEQFPGVIYRVKEPKSVILLFSSGKIVCSG 160
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 47/87 (54%), Gaps = 3/87 (3%)
Query: 40 PEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYRRENG-MVTMKLRKPYTTASIWSSGK 98
P++D+ N+V S + NL +AL N EY E V ++++P + ++SSGK
Sbjct: 98 PQIDV--QNMVFSGDIGREFNLDVVALTLPNCEYEPEQFPGVIYRVKEPKSVILLFSSGK 155
Query: 99 ITCTGATSEDQSKIAARRYARCLQRLG 125
I C+GA SE + A R+ R L + G
Sbjct: 156 IVCSGAKSEADAWEAVRKLLRELDKYG 182
Score = 35.8 bits (81), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 17/70 (24%), Positives = 32/70 (45%)
Query: 131 TNFRVVNVLGTCSMPFAIRILQFSEKHRAAEYEPELHPGVTYRITRPKATLKIFSTGGIT 190
R+ N++ + + + + + + ++Y PE PG+ + PK L IFS+G +
Sbjct: 7 VKLRIENIVASVDLFAQLDLEKVLDLCPNSKYNPEEFPGIICHLDDPKVALLIFSSGKLV 66
Query: 191 VTACNDSNKI 200
VT I
Sbjct: 67 VTGAKSVQDI 76
>pdb|1AIS|A Chain A, Tata-Binding ProteinTRANSCRIPTION FACTOR (II)BTATA-Box
Complex From Pyrococcus Woesei
Length = 182
Score = 64.7 bits (156), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 48/158 (30%), Positives = 78/158 (49%), Gaps = 8/158 (5%)
Query: 41 EVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYRREN--GMVTMKLRKPYTTASIWSSGK 98
+V + I N+V S + L+L ++ N +Y E G++ L P I+SSGK
Sbjct: 6 KVKLRIENIVASVDLFAQLDLEKVLDLCPNSKYNPEEFPGIIC-HLDDPKVALLIFSSGK 64
Query: 99 ITCTGATSEDQSKIAARRYARCLQRLGFK-ARFTNFRVVNVL--GTCSMPFAIRILQFSE 155
+ TGA S + A + A+ L+ +G K R V N++ G F + ++ +
Sbjct: 65 LVVTGAKSVQDIERAVAKLAQKLKSIGVKFKRAPQIDVQNMVFSGDIGREFNLDVVALTL 124
Query: 156 KHRAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTA 193
+ EYEPE PGV YR+ PK+ + +FS+G I +
Sbjct: 125 PN--CEYEPEQFPGVIYRVKEPKSVILLFSSGKIVCSG 160
Score = 47.0 bits (110), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 46/85 (54%), Gaps = 3/85 (3%)
Query: 40 PEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYRRENG-MVTMKLRKPYTTASIWSSGK 98
P++D+ N+V S + NL +AL N EY E V ++++P + ++SSGK
Sbjct: 98 PQIDV--QNMVFSGDIGREFNLDVVALTLPNCEYEPEQFPGVIYRVKEPKSVILLFSSGK 155
Query: 99 ITCTGATSEDQSKIAARRYARCLQR 123
I C+GA SE + A R+ R L +
Sbjct: 156 IVCSGAKSEADAWEAVRKLLRELDK 180
Score = 35.8 bits (81), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 17/70 (24%), Positives = 32/70 (45%)
Query: 131 TNFRVVNVLGTCSMPFAIRILQFSEKHRAAEYEPELHPGVTYRITRPKATLKIFSTGGIT 190
R+ N++ + + + + + + ++Y PE PG+ + PK L IFS+G +
Sbjct: 7 VKLRIENIVASVDLFAQLDLEKVLDLCPNSKYNPEEFPGIICHLDDPKVALLIFSSGKLV 66
Query: 191 VTACNDSNKI 200
VT I
Sbjct: 67 VTGAKSVQDI 76
>pdb|4E14|A Chain A, Crystal Structure Of Kynurenine Formamidase Conjugated
With Phenylmethylsulfonyl Fluoride
pdb|4E15|A Chain A, Crystal Structure Of Kynurenine Formamidase Conjugated
With An Inhibitor
pdb|4E15|B Chain B, Crystal Structure Of Kynurenine Formamidase Conjugated
With An Inhibitor
Length = 303
Score = 37.7 bits (86), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 88 YTTASIWSSGKITCTGATSEDQSKIA-ARRYARCLQRLGFKARFTNFR 134
YT ++W+S KI A + + I +R YA L++ G+KA FT F+
Sbjct: 228 YTDVTVWNSTKIYVVAAEHDSTTFIEQSRHYADVLRKKGYKASFTLFK 275
>pdb|4E11|A Chain A, Crystal Structure Of Kynurenine Formamidase From
Drosophila Melanogaster
Length = 303
Score = 37.7 bits (86), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 88 YTTASIWSSGKITCTGATSEDQSKIA-ARRYARCLQRLGFKARFTNFR 134
YT ++W+S KI A + + I +R YA L++ G+KA FT F+
Sbjct: 228 YTDVTVWNSTKIYVVAAEHDSTTFIEQSRHYADVLRKKGYKASFTLFK 275
>pdb|2V8T|A Chain A, Crystal Structure Of Mn Catalase From Thermus Thermophilus
Complexed With Chloride
pdb|2V8T|B Chain B, Crystal Structure Of Mn Catalase From Thermus Thermophilus
Complexed With Chloride
pdb|2V8U|A Chain A, Atomic Resolution Structure Of Mn Catalase From Thermus
Thermophilus
pdb|2V8U|B Chain B, Atomic Resolution Structure Of Mn Catalase From Thermus
Thermophilus
Length = 302
Score = 32.7 bits (73), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 14/24 (58%)
Query: 153 FSEKHRAAEYEPELHPGVTYRITR 176
F H AAE+ PE HPG Y I +
Sbjct: 272 FDAGHDAAEFAPEFHPGELYEIAK 295
>pdb|2CWL|A Chain A, Crystal Structure Of Manganese-Free Form Of Pseudocatalase
From Thermus Thermophilus Hb8
pdb|2CWL|B Chain B, Crystal Structure Of Manganese-Free Form Of Pseudocatalase
From Thermus Thermophilus Hb8
Length = 302
Score = 32.7 bits (73), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 14/24 (58%)
Query: 153 FSEKHRAAEYEPELHPGVTYRITR 176
F H AAE+ PE HPG Y I +
Sbjct: 272 FDAGHDAAEFAPEFHPGELYEIAK 295
>pdb|1KX2|A Chain A, Minimized Average Structure Of A Mono-Heme Ferrocytochrome
C From Shewanella Putrefaciens
pdb|1KX7|A Chain A, Family Of 30 Conformers Of A Mono-Heme Ferrocytochrome C
From Shewanella Putrefaciens Solved By Nmr
Length = 81
Score = 28.9 bits (63), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 15/57 (26%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Query: 142 CSMPFAIRILQFSEKHRAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTACNDSN 198
C++ ++ + + H A++EP L GV + K L GG+ T C D +
Sbjct: 14 CTVCHSMGVAGAPKSHNTADWEPRLAKGVDNLVKSVKTGLNAMPPGGM-CTDCTDED 69
>pdb|2GL5|A Chain A, Crystal Structure Of Putative Dehydratase From Salmonella
Thyphimurium
pdb|2GL5|B Chain B, Crystal Structure Of Putative Dehydratase From Salmonella
Thyphimurium
Length = 410
Score = 28.5 bits (62), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 4/67 (5%)
Query: 102 TGATSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKHRAAE 161
+G DQ K+ R A + +G A + ++LGT S AI+ + EK+R
Sbjct: 193 SGLLLADQLKMGEARIAAMREAMGDDADII-VEIHSLLGTNS---AIQFAKAIEKYRIFL 248
Query: 162 YEPELHP 168
YE +HP
Sbjct: 249 YEEPIHP 255
>pdb|4E6M|A Chain A, Crystal Structure Of Putative Dehydratase Protein From
Salmonella Enterica Subsp. Enterica Serovar Typhimurium
(Salmonella Typhimurium)
pdb|4E6M|B Chain B, Crystal Structure Of Putative Dehydratase Protein From
Salmonella Enterica Subsp. Enterica Serovar Typhimurium
(Salmonella Typhimurium)
pdb|4E6M|C Chain C, Crystal Structure Of Putative Dehydratase Protein From
Salmonella Enterica Subsp. Enterica Serovar Typhimurium
(Salmonella Typhimurium)
pdb|4E6M|D Chain D, Crystal Structure Of Putative Dehydratase Protein From
Salmonella Enterica Subsp. Enterica Serovar Typhimurium
(Salmonella Typhimurium)
pdb|4E6M|E Chain E, Crystal Structure Of Putative Dehydratase Protein From
Salmonella Enterica Subsp. Enterica Serovar Typhimurium
(Salmonella Typhimurium)
pdb|4E6M|F Chain F, Crystal Structure Of Putative Dehydratase Protein From
Salmonella Enterica Subsp. Enterica Serovar Typhimurium
(Salmonella Typhimurium)
pdb|4E6M|G Chain G, Crystal Structure Of Putative Dehydratase Protein From
Salmonella Enterica Subsp. Enterica Serovar Typhimurium
(Salmonella Typhimurium)
pdb|4E6M|H Chain H, Crystal Structure Of Putative Dehydratase Protein From
Salmonella Enterica Subsp. Enterica Serovar Typhimurium
(Salmonella Typhimurium)
Length = 423
Score = 28.5 bits (62), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 4/67 (5%)
Query: 102 TGATSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKHRAAE 161
+G DQ K+ R A + +G A + ++LGT S AI+ + EK+R
Sbjct: 214 SGLLLADQLKMGEARIAAMREAMGDDADII-VEIHSLLGTNS---AIQFAKAIEKYRIFL 269
Query: 162 YEPELHP 168
YE +HP
Sbjct: 270 YEEPIHP 276
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.132 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,072,855
Number of Sequences: 62578
Number of extensions: 226815
Number of successful extensions: 620
Number of sequences better than 100.0: 29
Number of HSP's better than 100.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 523
Number of HSP's gapped (non-prelim): 56
length of query: 204
length of database: 14,973,337
effective HSP length: 94
effective length of query: 110
effective length of database: 9,091,005
effective search space: 1000010550
effective search space used: 1000010550
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)