Query psy9199
Match_columns 204
No_of_seqs 155 out of 577
Neff 5.6
Searched_HMMs 29240
Date Fri Aug 16 21:25:12 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9199.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/9199hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3eik_A Tata-box-binding protei 100.0 2.4E-62 8.2E-67 417.0 20.3 189 9-202 5-203 (218)
2 1ytb_A Protein (tata binding p 100.0 7.7E-62 2.6E-66 404.0 19.7 162 41-202 2-165 (180)
3 1ais_A TBP, protein (tata-bind 100.0 2E-60 6.8E-65 396.1 19.7 164 39-202 4-169 (182)
4 1mp9_A Tata-binding protein; t 100.0 2.8E-60 9.6E-65 399.8 20.6 168 35-202 4-173 (198)
5 2z8u_A Tata-box-binding protei 100.0 1.5E-60 5.2E-65 398.6 18.7 162 41-202 10-173 (188)
6 1rm1_A Tata-box binding protei 100.0 4.3E-60 1.5E-64 408.4 19.9 162 41-202 62-225 (240)
7 1rm1_A Tata-box binding protei 100.0 1.8E-31 6.2E-36 230.0 7.7 109 90-202 26-134 (240)
8 2z8u_A Tata-box-binding protei 99.9 3.9E-26 1.3E-30 190.6 12.3 88 39-126 99-187 (188)
9 1mp9_A Tata-binding protein; t 99.9 9E-26 3.1E-30 189.7 11.7 89 40-128 100-189 (198)
10 1ais_A TBP, protein (tata-bind 99.9 1.4E-25 4.6E-30 186.4 11.1 85 40-124 96-181 (182)
11 1ytb_A Protein (tata binding p 99.9 2.2E-25 7.7E-30 184.8 7.7 71 132-202 4-74 (180)
12 3eik_A Tata-box-binding protei 99.9 3.1E-22 1.1E-26 170.2 11.6 84 41-124 130-215 (218)
13 2d0b_A RNAse HIII, ribonucleas 91.0 0.32 1.1E-05 42.7 5.7 32 78-110 31-62 (310)
14 3vn5_A RNAse HIII, ribonucleas 90.1 0.076 2.6E-06 45.7 0.9 39 162-200 23-61 (257)
15 2d0b_A RNAse HIII, ribonucleas 89.7 0.24 8.2E-06 43.5 3.7 39 161-199 22-61 (310)
16 3vn5_A RNAse HIII, ribonucleas 87.2 0.4 1.4E-05 41.2 3.4 33 78-111 30-62 (257)
17 1dby_A Chloroplast thioredoxin 64.4 11 0.00036 25.5 4.7 29 89-117 75-105 (107)
18 1t00_A Thioredoxin, TRX; redox 61.7 8.5 0.00029 26.3 3.8 30 89-118 79-110 (112)
19 3gnj_A Thioredoxin domain prot 61.5 12 0.0004 25.4 4.5 30 89-118 78-109 (111)
20 2trx_A Thioredoxin; electron t 61.1 11 0.00038 25.4 4.3 29 89-117 76-106 (108)
21 3tco_A Thioredoxin (TRXA-1); d 60.8 8.2 0.00028 25.9 3.5 30 89-118 77-108 (109)
22 2es7_A Q8ZP25_salty, putative 60.4 10 0.00035 28.5 4.3 30 89-118 93-124 (142)
23 1fb6_A Thioredoxin M; electron 59.4 12 0.00043 24.9 4.3 29 89-117 74-104 (105)
24 1thx_A Thioredoxin, thioredoxi 58.5 13 0.00045 25.2 4.3 30 89-118 81-112 (115)
25 2o8v_B Thioredoxin 1; disulfid 58.3 12 0.00042 26.9 4.3 30 89-118 96-127 (128)
26 1kng_A Thiol:disulfide interch 56.9 13 0.00044 26.8 4.2 33 89-121 120-154 (156)
27 2jvf_A De novo protein M7; tet 56.4 15 0.0005 26.1 4.2 24 104-127 56-79 (96)
28 2i4a_A Thioredoxin; acidophIle 56.1 11 0.00039 25.2 3.6 28 89-116 76-105 (107)
29 1w4v_A Thioredoxin, mitochondr 55.9 15 0.0005 25.8 4.3 103 7-117 3-117 (119)
30 3qfa_C Thioredoxin; protein-pr 54.8 14 0.00047 25.9 4.0 104 6-117 1-115 (116)
31 4euy_A Uncharacterized protein 54.7 7.5 0.00026 26.6 2.5 74 43-117 19-103 (105)
32 2e0q_A Thioredoxin; electron t 54.1 18 0.00061 23.8 4.3 30 89-118 71-102 (104)
33 1ep7_A Thioredoxin CH1, H-type 53.8 16 0.00056 24.7 4.2 28 90-118 81-110 (112)
34 3gix_A Thioredoxin-like protei 52.2 21 0.0007 26.6 4.8 34 90-123 80-125 (149)
35 3m9j_A Thioredoxin; oxidoreduc 51.9 13 0.00046 24.8 3.4 28 89-117 75-104 (105)
36 1v98_A Thioredoxin; oxidoreduc 51.3 18 0.00063 25.9 4.3 30 89-118 106-137 (140)
37 3hz4_A Thioredoxin; NYSGXRC, P 50.6 20 0.0007 25.9 4.5 35 89-123 80-116 (140)
38 2b1k_A Thiol:disulfide interch 50.0 22 0.00075 26.1 4.6 35 89-123 128-164 (168)
39 2opv_A KHSRP protein; KH domai 50.0 22 0.00074 24.5 4.3 33 88-122 44-84 (85)
40 3p2a_A Thioredoxin 2, putative 49.8 18 0.00061 26.3 4.1 31 89-119 111-143 (148)
41 2yzu_A Thioredoxin; redox prot 49.7 10 0.00035 25.3 2.5 29 89-117 74-104 (109)
42 2ppt_A Thioredoxin-2; thiredox 47.5 22 0.00075 26.6 4.3 30 89-118 120-151 (155)
43 2voc_A Thioredoxin; electron t 47.0 17 0.0006 25.0 3.4 27 89-115 73-101 (112)
44 3zzx_A Thioredoxin; oxidoreduc 46.9 20 0.0007 25.2 3.8 27 89-116 75-103 (105)
45 1syr_A Thioredoxin; SGPP, stru 46.5 11 0.00039 25.9 2.4 27 90-117 82-110 (112)
46 2j23_A Thioredoxin; immune pro 45.7 20 0.00069 25.2 3.7 28 89-117 90-119 (121)
47 3d22_A TRXH4, thioredoxin H-ty 45.6 26 0.0009 24.9 4.4 29 90-119 102-132 (139)
48 1r26_A Thioredoxin; redox-acti 44.7 29 0.00099 24.8 4.4 29 89-118 92-122 (125)
49 2av4_A Thioredoxin-like protei 44.6 24 0.00084 28.0 4.3 61 61-123 63-143 (160)
50 3emx_A Thioredoxin; structural 44.3 27 0.00091 25.1 4.2 29 90-118 95-125 (135)
51 2qgv_A Hydrogenase-1 operon pr 44.2 26 0.0009 26.9 4.3 30 89-118 93-124 (140)
52 2kuc_A Putative disulphide-iso 43.9 37 0.0013 23.7 4.8 29 89-117 88-119 (130)
53 1nsw_A Thioredoxin, TRX; therm 43.6 10 0.00035 25.4 1.7 28 89-116 73-102 (105)
54 2pu9_C TRX-F, thioredoxin F-ty 43.5 37 0.0013 23.0 4.7 27 90-117 81-109 (111)
55 1oaz_A Thioredoxin 1; immune s 42.2 17 0.00057 26.0 2.8 28 89-116 91-120 (123)
56 2o5a_A BH1328 protein; BHR21, 41.7 34 0.0012 26.0 4.5 44 79-127 22-65 (125)
57 2vlu_A Thioredoxin, thioredoxi 41.2 32 0.0011 23.7 4.1 27 90-117 90-118 (122)
58 2qsi_A Putative hydrogenase ex 41.0 36 0.0012 26.0 4.7 31 89-119 91-123 (137)
59 2l57_A Uncharacterized protein 40.4 41 0.0014 23.4 4.6 29 89-117 84-115 (126)
60 4f9u_A CG32412; alpha/beta hyd 39.8 40 0.0014 28.3 5.2 35 109-143 30-74 (312)
61 2a4v_A Peroxiredoxin DOT5; yea 39.4 39 0.0013 24.7 4.6 35 89-124 120-156 (159)
62 2oe3_A Thioredoxin-3; electron 39.2 20 0.00067 25.1 2.7 26 89-115 85-112 (114)
63 2id1_A Hypothetical protein; a 38.8 41 0.0014 25.7 4.6 28 99-127 38-65 (130)
64 1faa_A Thioredoxin F; electron 38.6 35 0.0012 23.6 4.0 27 90-117 94-122 (124)
65 2fwh_A Thiol:disulfide interch 37.4 19 0.00064 25.9 2.4 29 89-117 93-126 (134)
66 2vim_A Thioredoxin, TRX; thior 37.1 43 0.0015 22.0 4.1 27 90-117 75-103 (104)
67 3nec_A Profilin, inflammatory 36.1 62 0.0021 25.6 5.5 45 82-126 115-166 (166)
68 1xfl_A Thioredoxin H1; AT3G510 35.9 40 0.0014 23.8 4.0 28 89-117 93-122 (124)
69 2xc2_A Thioredoxinn; oxidoredu 35.5 45 0.0015 22.8 4.1 28 89-117 87-116 (117)
70 1x5d_A Protein disulfide-isome 35.3 45 0.0015 23.1 4.1 31 89-119 85-117 (133)
71 1zzo_A RV1677; thioredoxin fol 35.2 44 0.0015 22.8 4.1 29 90-118 104-134 (136)
72 3uvt_A Thioredoxin domain-cont 35.0 39 0.0013 22.5 3.6 28 89-116 80-109 (111)
73 2l6c_A Thioredoxin; oxidoreduc 34.6 38 0.0013 23.2 3.6 28 89-116 74-103 (110)
74 1lu4_A Soluble secreted antige 34.4 38 0.0013 23.3 3.6 29 90-118 102-135 (136)
75 3kh7_A Thiol:disulfide interch 34.4 60 0.002 24.3 5.0 35 89-123 135-171 (176)
76 3d6i_A Monothiol glutaredoxin- 34.3 56 0.0019 22.0 4.4 30 89-119 78-109 (112)
77 1ti3_A Thioredoxin H, PTTRXH1; 33.6 46 0.0016 22.3 3.8 28 90-118 82-111 (113)
78 3die_A Thioredoxin, TRX; elect 33.4 26 0.0009 23.2 2.5 28 89-116 75-104 (106)
79 1zma_A Bacterocin transport ac 33.0 19 0.00064 25.0 1.7 26 89-114 89-116 (118)
80 2l5l_A Thioredoxin; structural 33.0 61 0.0021 23.0 4.6 30 89-118 94-125 (136)
81 2i1u_A Thioredoxin, TRX, MPT46 32.5 22 0.00074 24.4 2.0 28 89-116 86-115 (121)
82 2ggt_A SCO1 protein homolog, m 32.0 73 0.0025 22.8 5.0 31 89-119 129-161 (164)
83 2in3_A Hypothetical protein; D 31.8 47 0.0016 25.6 4.1 31 89-119 178-210 (216)
84 3f3q_A Thioredoxin-1; His TAG, 31.4 43 0.0015 22.9 3.4 28 89-117 79-108 (109)
85 3kij_A Probable glutathione pe 31.4 48 0.0017 24.8 4.0 33 90-122 139-173 (180)
86 1x4m_A FAR upstream element bi 31.2 34 0.0012 24.0 2.9 35 89-125 46-88 (94)
87 2rli_A SCO2 protein homolog, m 31.2 59 0.002 23.6 4.4 32 89-120 132-165 (171)
88 1nho_A Probable thioredoxin; b 30.7 59 0.002 20.5 3.9 22 96-117 62-83 (85)
89 3lwa_A Secreted thiol-disulfid 30.7 68 0.0023 23.8 4.7 31 89-119 149-181 (183)
90 2vm1_A Thioredoxin, thioredoxi 30.5 65 0.0022 21.7 4.2 29 89-118 83-113 (118)
91 3nul_A Profilin I; cytoskeleto 30.5 1E+02 0.0035 23.0 5.7 37 90-126 90-130 (130)
92 4fuu_A Leucine aminopeptidase; 30.3 71 0.0024 26.8 5.2 35 109-143 46-90 (309)
93 2yj7_A LPBCA thioredoxin; oxid 36.0 11 0.00038 24.9 0.0 28 89-116 75-104 (106)
94 4fai_A CG5976, isoform B; alph 29.7 61 0.0021 27.7 4.8 35 109-143 57-101 (330)
95 1gh2_A Thioredoxin-like protei 29.6 48 0.0017 22.2 3.4 27 89-116 76-104 (107)
96 1acf_A Profilin I; protein bin 29.5 98 0.0034 22.8 5.3 42 85-126 80-125 (125)
97 2ctm_A Vigilin; K homology typ 29.1 68 0.0023 22.6 4.2 35 88-124 47-86 (95)
98 3i96_A Ethanolamine utilizatio 28.9 74 0.0025 24.0 4.5 30 96-127 74-104 (119)
99 3ups_A Iojap-like protein; PSI 28.3 52 0.0018 25.3 3.6 44 79-127 38-81 (136)
100 1xwb_A Thioredoxin; dimerizati 28.3 58 0.002 21.4 3.6 26 90-116 77-104 (106)
101 3dml_A Putative uncharacterize 28.1 90 0.0031 22.9 4.9 38 82-120 72-111 (116)
102 1ypr_A Profilin; actin-binding 28.1 1.2E+02 0.0042 22.4 5.7 44 83-126 78-125 (125)
103 3h93_A Thiol:disulfide interch 27.6 86 0.0029 23.7 4.9 28 96-123 159-188 (192)
104 1zzk_A Heterogeneous nuclear r 27.3 77 0.0026 21.4 4.1 26 97-124 52-77 (82)
105 2vqe_K 30S ribosomal protein S 27.1 57 0.002 24.9 3.6 47 81-127 29-78 (129)
106 3tc8_A Leucine aminopeptidase; 27.0 96 0.0033 26.3 5.5 37 106-143 44-90 (309)
107 2axy_A Poly(RC)-binding protei 26.4 1E+02 0.0035 20.3 4.5 33 89-123 36-72 (73)
108 3it4_B Arginine biosynthesis b 26.2 52 0.0018 27.2 3.5 21 99-119 89-109 (205)
109 3qou_A Protein YBBN; thioredox 26.1 66 0.0022 25.9 4.1 29 89-117 82-112 (287)
110 1fo5_A Thioredoxin; disulfide 26.0 51 0.0017 20.8 2.8 22 96-117 63-84 (85)
111 2dj1_A Protein disulfide-isome 25.8 70 0.0024 22.4 3.8 29 89-117 93-122 (140)
112 1m72_A Caspase-1; caspase, cys 25.3 29 0.00099 29.3 1.8 49 81-129 24-73 (272)
113 2dko_A Caspase-3; low barrier 25.1 33 0.0011 26.4 2.0 49 82-130 9-59 (146)
114 3sir_A Caspase; hydrolase; 2.6 24.9 30 0.001 28.9 1.9 49 82-130 13-62 (259)
115 2vup_A Glutathione peroxidase- 24.7 92 0.0031 23.5 4.5 31 89-119 153-185 (190)
116 3eyt_A Uncharacterized protein 24.5 92 0.0032 22.2 4.3 30 89-118 120-151 (158)
117 2dbc_A PDCL2, unnamed protein 24.4 70 0.0024 23.0 3.6 38 89-126 82-121 (135)
118 3gux_A Putative Zn-dependent e 24.3 1.1E+02 0.0039 26.0 5.5 37 106-143 46-92 (314)
119 2pbd_P Profilin-1, profilin I; 24.0 1.2E+02 0.004 23.0 4.9 36 91-126 100-139 (139)
120 2b5x_A YKUV protein, TRXY; thi 23.8 94 0.0032 21.5 4.2 29 90-118 113-144 (148)
121 2fp3_A Caspase NC; apoptosis, 23.6 32 0.0011 29.8 1.8 47 82-129 53-101 (316)
122 3ia1_A THIO-disulfide isomeras 23.5 1E+02 0.0035 21.8 4.4 29 89-117 112-142 (154)
123 3dxb_A Thioredoxin N-terminall 23.5 82 0.0028 24.6 4.1 30 89-118 86-117 (222)
124 3lor_A Thiol-disulfide isomera 23.2 1.1E+02 0.0037 21.8 4.5 30 89-118 123-154 (160)
125 2ctf_A Vigilin; K homology typ 22.9 1.1E+02 0.0038 21.8 4.4 28 95-124 66-93 (102)
126 1pyo_A Caspase-2; apoptosis, c 22.8 44 0.0015 26.3 2.3 49 82-130 26-76 (167)
127 1xhk_A Putative protease LA ho 22.8 71 0.0024 25.2 3.6 23 97-123 39-61 (187)
128 2cte_A Vigilin; K homology typ 22.7 1E+02 0.0035 21.4 4.1 27 96-124 59-85 (94)
129 1vra_B Arginine biosynthesis b 22.5 55 0.0019 27.2 2.9 21 99-119 95-115 (215)
130 2v1m_A Glutathione peroxidase; 22.1 75 0.0026 22.9 3.4 31 89-119 135-167 (169)
131 2jkg_A Profilin; proline-rich 22.1 1.2E+02 0.0041 24.5 4.8 46 82-127 120-172 (179)
132 3r8n_K 30S ribosomal protein S 22.1 30 0.001 26.0 1.1 46 82-127 20-68 (117)
133 2v4i_B Glutamate N-acetyltrans 22.1 57 0.002 27.1 2.9 21 99-119 88-108 (213)
134 2nn3_C Caspase-1; cysteine pro 22.1 36 0.0012 29.5 1.8 49 81-129 52-101 (310)
135 3f9u_A Putative exported cytoc 22.1 84 0.0029 23.1 3.8 34 90-123 133-170 (172)
136 2opa_A Probable tautomerase YW 22.0 1.4E+02 0.0049 18.1 6.0 34 100-133 6-40 (61)
137 3fsi_A RT, reverse transcripta 21.9 95 0.0032 25.1 4.3 43 87-131 192-234 (255)
138 1mek_A Protein disulfide isome 21.8 54 0.0019 21.9 2.4 27 89-115 83-113 (120)
139 3ul3_B Thioredoxin, thioredoxi 21.8 65 0.0022 22.6 2.9 27 89-115 98-126 (128)
140 3m21_A Probable tautomerase HP 21.8 1.6E+02 0.0055 18.6 6.2 29 104-132 13-42 (67)
141 1qgv_A Spliceosomal protein U5 21.7 81 0.0028 23.0 3.6 33 89-121 79-123 (142)
142 1a8l_A Protein disulfide oxido 21.7 81 0.0028 24.2 3.7 29 89-117 194-224 (226)
143 2hh2_A KH-type splicing regula 21.5 58 0.002 23.4 2.6 26 97-124 55-80 (107)
144 3cmi_A Peroxiredoxin HYR1; thi 21.3 66 0.0023 23.7 3.0 30 89-118 136-167 (171)
145 2h54_A Caspase-1; allosteric s 21.3 71 0.0024 25.3 3.3 47 82-130 34-83 (178)
146 1nw9_B Caspase 9, apoptosis-re 20.8 44 0.0015 28.1 2.0 49 82-130 14-64 (277)
147 3d9y_A Profilin; yeast, actin- 20.8 1.9E+02 0.0064 21.3 5.4 38 89-126 86-127 (127)
148 3ha9_A Uncharacterized thiored 20.7 1.1E+02 0.0039 21.9 4.2 30 89-118 133-163 (165)
149 1sen_A Thioredoxin-like protei 20.4 86 0.0029 23.4 3.5 35 89-123 105-152 (164)
150 3kjj_A NMB1025 protein; YJGF p 20.3 65 0.0022 24.0 2.7 38 92-129 29-66 (128)
151 2l5o_A Putative thioredoxin; s 20.2 1.2E+02 0.0041 21.3 4.2 30 90-119 110-141 (153)
152 2dj0_A Thioredoxin-related tra 20.2 77 0.0026 22.4 3.1 23 180-202 90-114 (137)
153 3evi_A Phosducin-like protein 20.1 30 0.001 25.2 0.7 38 89-126 75-114 (118)
154 2ju5_A Thioredoxin disulfide i 20.0 1.3E+02 0.0046 21.8 4.5 30 89-118 118-151 (154)
No 1
>3eik_A Tata-box-binding protein; DNA-binding, initiation factor, nucleus, transcription; 1.90A {Encephalitozoon cuniculi} PDB: 3oci_A 3oc3_C
Probab=100.00 E-value=2.4e-62 Score=416.95 Aligned_cols=189 Identities=37% Similarity=0.661 Sum_probs=156.0
Q ss_pred eecCCCCCCCCCCC--------CccccCCCCCCCCCCCCCCCceEEEEEEEEEeeCCccChHHHHhcCCCceeeCCC-ce
Q psy9199 9 THSSHSEQEPPPTQ--------TVVPIQNHAPPQPPAHDPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYRREN-GM 79 (204)
Q Consensus 9 ~~~~~~~~~~~~~~--------~~~~i~e~~~~~~~~~~~~~~i~I~NVVas~~l~~~ldL~~la~~~~n~eYePe~-g~ 79 (204)
.|..||..+-|+-+ ++++++|+.+..+ .+.++|+||||+++++|+|||++||..++|+||||++ +.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~i~~~I~NIVas~~l~~~ldL~~ia~~~~n~eYePe~Fpg 79 (218)
T 3eik_A 5 HHHHHSSGLVPRGSHMMDAPDISYEHQETSVPNRS-----GIIPTLQNVVATVNLSCKLDLKNIALRARNAEYNPKRFAA 79 (218)
T ss_dssp ----------------------------------------CCSCEEEEEEEEEECSSCCCHHHHHHHCTTEECCTTTCSS
T ss_pred cccccccCcccCCcccccCCCCChhHhhcccCCCC-----CCceEEEEEEEEEECCCccCHHHHHhhCCCcEEcCccCce
Confidence 44555655555443 6777777765443 5678999999999999999999999999999999998 55
Q ss_pred EEEEecCCcEEEEEeCCCceEEeecCCHHHHHHHHHHHHHHHHHcCCccccceeeEEEEEEEEeCCCccChHHHHHHcc-
Q psy9199 80 VTMKLRKPYTTASIWSSGKITCTGATSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKHR- 158 (204)
Q Consensus 80 vi~Rl~~P~~tvlIF~SGKivitGakS~e~a~~a~~k~~~~L~~lG~~v~~~~f~v~NIvat~~~~~~I~L~~la~~~~- 158 (204)
++||+++|++++|||+||||+||||||+++++.|+++++++|+++|+++++.+|+||||||||+|+|+|||++||..|+
T Consensus 80 lv~Rl~~Pk~t~LIF~SGKiV~TGAkS~e~a~~A~~ki~~~L~~lG~~v~~~~fkIqNIvas~dl~f~I~Le~la~~~~~ 159 (218)
T 3eik_A 80 VIMRIREPKTTALIFASGKMVITGAKSEKSSRMAAQRYAKIIHKLGFNATFDDFKIQNIVSSCDIKFSIRLEGLAYAHSN 159 (218)
T ss_dssp EEEEETTTTEEEEECTTSEEEEEEESSHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEEEEEEEECSSCBCHHHHHHHSTT
T ss_pred EEEEecCCcEEEEEECCCeEEEEecCCHHHHHHHHHHHHHHHHHcCCCcccccceEEEEEEEEECCCcCcHHHHHHhccC
Confidence 6899999999999999999999999999999999999999999999999999999999999999999999999999885
Q ss_pred ccccCCCCCceeEEEeCCCceEEEEeccCcEEEEecCCCCcccc
Q psy9199 159 AAEYEPELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKIPV 202 (204)
Q Consensus 159 ~~~YePe~fPgliyr~~~pk~t~lIF~sGkivitGak~~~~~~~ 202 (204)
+++||||+||||+|||.+|++|++||+||||||||||++++++.
T Consensus 160 ~~~YEPE~fPGliyR~~~pkvt~lIF~SGKiviTGaks~~d~~~ 203 (218)
T 3eik_A 160 YCSYEPELFPGLIYRMVKPKIVLLIFVSGKIVLTGAKVRDDIYQ 203 (218)
T ss_dssp TEECCTTTSSSEEEEETTTTEEEEECTTSEEEEEEESSHHHHHH
T ss_pred CcEECCccCceEEEEcCCCCEEEEEeCCCeEEEEecCCHHHHHH
Confidence 99999999999999999999999999999999999999998753
No 2
>1ytb_A Protein (tata binding protein (TBP)); protein-DNA complex, transcription/DNA complex; HET: DNA; 1.80A {Saccharomyces cerevisiae} SCOP: d.129.1.1 d.129.1.1 PDB: 1ngm_A* 1tba_B 1nh2_A* 1ytf_A* 1tbp_A 1qna_A* 1qn3_A* 1qn5_A* 1qn6_A* 1qn7_A* 1qn8_A* 1qn9_A* 1qn4_A* 1qnb_A* 1qnc_A* 1qne_A* 1vok_A 1vol_B* 1vto_A* 1vtl_E* ...
Probab=100.00 E-value=7.7e-62 Score=403.97 Aligned_cols=162 Identities=41% Similarity=0.770 Sum_probs=155.4
Q ss_pred CCceEEEEEEEEEeeCCccChHHHHhcCCCceeeCCC-ceEEEEecCCcEEEEEeCCCceEEeecCCHHHHHHHHHHHHH
Q psy9199 41 EVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYRREN-GMVTMKLRKPYTTASIWSSGKITCTGATSEDQSKIAARRYAR 119 (204)
Q Consensus 41 ~~~i~I~NVVas~~l~~~ldL~~la~~~~n~eYePe~-g~vi~Rl~~P~~tvlIF~SGKivitGakS~e~a~~a~~k~~~ 119 (204)
...++|+|||||++++|+|||++||..++|++|||++ +.++||+++|++++|||+||||+||||||+++++.|++++++
T Consensus 2 ~~~~~I~NiVas~~l~~~ldL~~ia~~~~n~eYePe~fpgli~R~~~Pk~~~lIF~SGKiv~TGaks~e~~~~a~~~i~~ 81 (180)
T 1ytb_A 2 GIVPTLQNIVATVTLGCRLDLKTVALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGAKSEDDSKLASRKYAR 81 (180)
T ss_dssp CCCCEEEEEEEEEECCSCCCHHHHHHHSSSEECCTTTCSSEEEEETTTTEEEEECTTSEEEEEEESSHHHHHHHHHHHHH
T ss_pred CCceEEEEEEEEEEcCCccCHHHHHhhCCCCEECccccCCEEEEeCCCcEEEEEECCCeEEEEecCCHHHHHHHHHHHHH
Confidence 3578899999999999999999999999999999997 555899999999999999999999999999999999999999
Q ss_pred HHHHcCCccccceeeEEEEEEEEeCCCccChHHHHHHcc-ccccCCCCCceeEEEeCCCceEEEEeccCcEEEEecCCCC
Q psy9199 120 CLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKHR-AAEYEPELHPGVTYRITRPKATLKIFSTGGITVTACNDSN 198 (204)
Q Consensus 120 ~L~~lG~~v~~~~f~v~NIvat~~~~~~I~L~~la~~~~-~~~YePe~fPgliyr~~~pk~t~lIF~sGkivitGak~~~ 198 (204)
+|+++|+++++.+|+|||||||||++|+|||++||..|+ +++||||+||||+|||.+||++++||+||||+|||||+++
T Consensus 82 ~L~~lg~~~~~~~~~i~NIvas~dl~~~I~Le~la~~~~~~~~YEPE~fPGliyR~~~pkv~~lIF~SGkivitGak~~~ 161 (180)
T 1ytb_A 82 IIQKIGFAAKFTDFKIQNIVGSCDVKFPIRLEGLAFSHGTFSSYEPELFPGLIYRMVKPKIVLLIFVSGKIVLTGAKQRE 161 (180)
T ss_dssp HHHHHTCCCCCEEEEEEEEEEEEECSSCBCHHHHHHHTTTTEECCTTTCSSEEEECSSSCCEEEECTTSEEEEEEESSHH
T ss_pred HHHHcCCCcccccceEEEEEEEEECCCccCHHHHHHhcccceEECCccCCcEEEEeCCCcEEEEEecCCeEEEEecCCHH
Confidence 999999999999999999999999999999999999885 9999999999999999999999999999999999999998
Q ss_pred cccc
Q psy9199 199 KIPV 202 (204)
Q Consensus 199 ~~~~ 202 (204)
+++.
T Consensus 162 ~~~~ 165 (180)
T 1ytb_A 162 EIYQ 165 (180)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8753
No 3
>1ais_A TBP, protein (tata-binding protein); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: d.129.1.1 d.129.1.1 PDB: 1d3u_A* 1pcz_A
Probab=100.00 E-value=2e-60 Score=396.07 Aligned_cols=164 Identities=27% Similarity=0.393 Sum_probs=157.1
Q ss_pred CCCCceEEEEEEEEEeeCCccChHHHHhcCCCceeeCCC-ceEEEEecCCcEEEEEeCCCceEEeecCCHHHHHHHHHHH
Q psy9199 39 DPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYRREN-GMVTMKLRKPYTTASIWSSGKITCTGATSEDQSKIAARRY 117 (204)
Q Consensus 39 ~~~~~i~I~NVVas~~l~~~ldL~~la~~~~n~eYePe~-g~vi~Rl~~P~~tvlIF~SGKivitGakS~e~a~~a~~k~ 117 (204)
.+...++|+|||||++++|+|||++||..++|++|||++ +.++||+++|+++++||+||||+||||||+++++.|++++
T Consensus 4 ~~~~~~~I~NvVas~~l~~~ldL~~ia~~~~n~eY~P~~fpgli~Rl~~P~~t~lIF~SGKiv~TGakS~~~~~~a~~~i 83 (182)
T 1ais_A 4 MSKVKLRIENIVASVDLFAQLDLEKVLDLCPNSKYNPEEFPGIICHLDDPKVALLIFSSGKLVVTGAKSVQDIERAVAKL 83 (182)
T ss_dssp CTTCEEEEEEEEEEEECCSCCCHHHHTTTSTTCBCCTTTCSSEEEECSSSCCEEEECTTSEEEEEEESSHHHHHHHHHHH
T ss_pred CCCCceEEEEEEEEEEcCCeeCHHHHHhhCCCcEECCCccccEEEEcCCCcEEEEEeCCCeEEEecCCCHHHHHHHHHHH
Confidence 457789999999999999999999999999999999997 5558999999999999999999999999999999999999
Q ss_pred HHHHHHcCCc-cccceeeEEEEEEEEeCCCccChHHHHHHccccccCCCCCceeEEEeCCCceEEEEeccCcEEEEecCC
Q psy9199 118 ARCLQRLGFK-ARFTNFRVVNVLGTCSMPFAIRILQFSEKHRAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTACND 196 (204)
Q Consensus 118 ~~~L~~lG~~-v~~~~f~v~NIvat~~~~~~I~L~~la~~~~~~~YePe~fPgliyr~~~pk~t~lIF~sGkivitGak~ 196 (204)
+++|+++|++ .++.+|+||||||||+++|+|||+.||..+++++||||+||||+||+.+|+++++||+||||+|||||+
T Consensus 84 ~~~L~~lG~~~~~~~~~~I~NIVas~~l~~~i~L~~la~~~~~~~YePe~fpgli~R~~~pk~~~lIF~SGKiviTGaks 163 (182)
T 1ais_A 84 AQKLKSIGVKFKRAPQIDVQNMVFSGDIGREFNLDVVALTLPNCEYEPEQFPGVIYRVKEPKSVILLFSSGKIVCSGAKS 163 (182)
T ss_dssp HHHHHHTTCCCSSSCEEEEEEEEEEEECSSCCCHHHHHHHSTTEECCTTTCSSEEEEETTTTEEEEECTTSEEEEEEESS
T ss_pred HHHHHHcCCCcccccceEEEEEEEEEEcCCccCHHHHHhhCCCCEECCccCceEEEEeCCCcEEEEEecCCEEEEEecCC
Confidence 9999999998 688899999999999999999999999998999999999999999999999999999999999999999
Q ss_pred CCcccc
Q psy9199 197 SNKIPV 202 (204)
Q Consensus 197 ~~~~~~ 202 (204)
+++++.
T Consensus 164 ~~~~~~ 169 (182)
T 1ais_A 164 EADAWE 169 (182)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998753
No 4
>1mp9_A Tata-binding protein; transcription regulation, DNA-binding protein, transcription factor, DNA binding protein; 2.00A {Sulfolobus acidocaldarius} SCOP: d.129.1.1 d.129.1.1
Probab=100.00 E-value=2.8e-60 Score=399.76 Aligned_cols=168 Identities=25% Similarity=0.443 Sum_probs=159.0
Q ss_pred CCCCCCCCceEEEEEEEEEeeCCccChHHHHhcCCCceeeCCC-ceEEEEecCCcEEEEEeCCCceEEeecCCHHHHHHH
Q psy9199 35 PPAHDPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYRREN-GMVTMKLRKPYTTASIWSSGKITCTGATSEDQSKIA 113 (204)
Q Consensus 35 ~~~~~~~~~i~I~NVVas~~l~~~ldL~~la~~~~n~eYePe~-g~vi~Rl~~P~~tvlIF~SGKivitGakS~e~a~~a 113 (204)
|+.+.....++|+|||||++++|+|||++||..++|++|||++ ++++||+++|+++++||+||||+||||+|+++++.|
T Consensus 4 ~~~~~~~~~~~I~NvVas~~l~~~ldL~~la~~~~n~eY~P~~fpgli~Rl~~Pk~t~lIF~SGKiv~TGakS~e~a~~a 83 (198)
T 1mp9_A 4 PDEIPYKAVVNIENIVATVTLDQTLDLYAMERSVPNVEYDPDQFPGLIFRLESPKITSLIFKSGKMVVTGAKSTDELIKA 83 (198)
T ss_dssp -CCCCCCCEEEEEEEEEEEECCSCCCHHHHHHHSTTCBCCTTTCSSEEEEETTTTEEEEECTTSEEEEECCSSHHHHHHH
T ss_pred cccCCCCCceEEEEEEEEEEcCCcccHHHHHhhCCCCEECCccccceEEEcCCCceEEEEeCCCeEEEeccCCHHHHHHH
Confidence 4445557889999999999999999999999999999999997 556899999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCc-cccceeeEEEEEEEEeCCCccChHHHHHHccccccCCCCCceeEEEeCCCceEEEEeccCcEEEE
Q psy9199 114 ARRYARCLQRLGFK-ARFTNFRVVNVLGTCSMPFAIRILQFSEKHRAAEYEPELHPGVTYRITRPKATLKIFSTGGITVT 192 (204)
Q Consensus 114 ~~k~~~~L~~lG~~-v~~~~f~v~NIvat~~~~~~I~L~~la~~~~~~~YePe~fPgliyr~~~pk~t~lIF~sGkivit 192 (204)
+++++++|+++|++ +++.+|+||||||||+++|+|||++||..+++++||||+||||+||+.+|++|++||+|||||||
T Consensus 84 ~~~i~~~L~~lG~~~~~~~~~~I~NIVas~~l~~~i~L~~la~~~~~~~YePe~fPgliyR~~~Pk~t~lIF~SGKiviT 163 (198)
T 1mp9_A 84 VKRIIKTLKKYGMQLTGKPKIQIQNIVASANLHVIVNLDKAAFLLENNMYEPEQFPGLIYRMDEPRVVLLIFSSGKMVIT 163 (198)
T ss_dssp HHHHHHHHHHTTCCCSSCCEEEEEEEEEEEECSSEECHHHHHHHSSSEECCTTTCSSEEEEETTTTEEEEECTTSEEEEE
T ss_pred HHHHHHHHHHcCCcccCcCceEEEEEEEEeeCCCccCHHHHHhhcCCcEECCccCCeEEEEeCCCcEEEEEeCCCEEEEE
Confidence 99999999999998 68889999999999999999999999999899999999999999999999999999999999999
Q ss_pred ecCCCCcccc
Q psy9199 193 ACNDSNKIPV 202 (204)
Q Consensus 193 Gak~~~~~~~ 202 (204)
|||++++++.
T Consensus 164 Gaks~~~~~~ 173 (198)
T 1mp9_A 164 GAKREDEVHK 173 (198)
T ss_dssp EESSHHHHHH
T ss_pred ecCCHHHHHH
Confidence 9999988753
No 5
>2z8u_A Tata-box-binding protein; transcription, DNA-binding protein, transcription factor, transcription regulation; 1.90A {Methanococcus jannaschii}
Probab=100.00 E-value=1.5e-60 Score=398.59 Aligned_cols=162 Identities=28% Similarity=0.478 Sum_probs=149.7
Q ss_pred CCceEEEEEEEEEeeCCccChHHHHhcCCCceeeCCC-ceEEEEecCCcEEEEEeCCCceEEeecCCHHHHHHHHHHHHH
Q psy9199 41 EVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYRREN-GMVTMKLRKPYTTASIWSSGKITCTGATSEDQSKIAARRYAR 119 (204)
Q Consensus 41 ~~~i~I~NVVas~~l~~~ldL~~la~~~~n~eYePe~-g~vi~Rl~~P~~tvlIF~SGKivitGakS~e~a~~a~~k~~~ 119 (204)
+..++|+|||||++++|+|||++||..++|+||||++ +.++||+++|+++++||+||||+||||+|+++++.|++++++
T Consensus 10 ~~~~~i~NvVas~~l~~~ldL~~ia~~~~n~eY~P~~fpgli~Rl~~Pk~t~lIF~SGKiv~TGAkS~e~a~~a~~~~~~ 89 (188)
T 2z8u_A 10 EPEIKIVNVVVSTKIGDNIDLEEVAMILENAEYEPEQFPGLVCRLSVPKVALLIFRSGKVNCTGAKSKEEAEIAIKKIIK 89 (188)
T ss_dssp -CCCEEEEEEEEEECCSSCCHHHHHHHSSCCC-------CEEEEETTTTEEEEECTTSEEEEEEESSHHHHHHHHHHHHH
T ss_pred CCCcEEEEEEEEEEeCCeeCHHHHHhhCCCCEECCCCcccEEEEcCCCcEEEEEeCCCeEEEecCCCHHHHHHHHHHHHH
Confidence 4568999999999999999999999999999999997 555899999999999999999999999999999999999999
Q ss_pred HHHHcCCc-cccceeeEEEEEEEEeCCCccChHHHHHHccccccCCCCCceeEEEeCCCceEEEEeccCcEEEEecCCCC
Q psy9199 120 CLQRLGFK-ARFTNFRVVNVLGTCSMPFAIRILQFSEKHRAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTACNDSN 198 (204)
Q Consensus 120 ~L~~lG~~-v~~~~f~v~NIvat~~~~~~I~L~~la~~~~~~~YePe~fPgliyr~~~pk~t~lIF~sGkivitGak~~~ 198 (204)
+|+++|++ +++.+|+||||||||+++|+|||+.||...++++||||+||||+||+.+|++|++||+||||||||||+++
T Consensus 90 ~L~~lg~~~~~~~~~~I~NIVas~~l~~~i~L~~la~~~~~~eYePe~fPgliyR~~~Pk~t~lIF~SGKiviTGaks~~ 169 (188)
T 2z8u_A 90 ELKDAGIDVIENPEIKIQNMVATADLGIEPNLDDIALMVEGTEYEPEQFPGLVYRLDDPKVVVLIFGSGKVVITGLKSEE 169 (188)
T ss_dssp HHHHTTCCCCSSCCCEEEEEEEEEECSSCCCHHHHHHHSTTEEECTTTSSSEEEEEETTEEEEEECTTSEEEEESCSCHH
T ss_pred HHHhcCCCccccCceEEEEEEEEEecCCccCHHHHHhhCcCcEECCccCceEEEEeCCCcEEEEEeCCCEEEEEecCCHH
Confidence 99999998 68889999999999999999999999999899999999999999999999999999999999999999999
Q ss_pred cccc
Q psy9199 199 KIPV 202 (204)
Q Consensus 199 ~~~~ 202 (204)
+++.
T Consensus 170 ~~~~ 173 (188)
T 2z8u_A 170 DAKR 173 (188)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8753
No 6
>1rm1_A Tata-box binding protein; yeast TFIIA, TBP protein, ATA-box DNA, transcription/DNA complex; 2.50A {Saccharomyces cerevisiae} SCOP: d.129.1.1 d.129.1.1
Probab=100.00 E-value=4.3e-60 Score=408.41 Aligned_cols=162 Identities=41% Similarity=0.770 Sum_probs=155.9
Q ss_pred CCceEEEEEEEEEeeCCccChHHHHhcCCCceeeCCC-ceEEEEecCCcEEEEEeCCCceEEeecCCHHHHHHHHHHHHH
Q psy9199 41 EVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYRREN-GMVTMKLRKPYTTASIWSSGKITCTGATSEDQSKIAARRYAR 119 (204)
Q Consensus 41 ~~~i~I~NVVas~~l~~~ldL~~la~~~~n~eYePe~-g~vi~Rl~~P~~tvlIF~SGKivitGakS~e~a~~a~~k~~~ 119 (204)
...++|+||||+++++|+|||++||..++|++|||++ +.++||+++|++++|||+||||+||||||+++++.|++++++
T Consensus 62 ~~~~~I~NIVas~~l~~~ldL~~ia~~~~n~eYePe~Fpgli~Rl~~Pk~t~lIF~SGKiV~TGaks~e~a~~A~~~i~~ 141 (240)
T 1rm1_A 62 GIVPTLQNIVATVTLGCRLDLKTVALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGAKSEDDSKLASRKYAR 141 (240)
T ss_dssp CCCCEEEEEEEEEECCSCCCHHHHHHHBTTEEECTTTCSEEEEEEETTEEEEEEETTSEEEEEEESSHHHHHHHHHHHHH
T ss_pred CCceEEEEEEEEEEcCCccCHHHHHhhCCCcEEcCcccceEEEEeCCCcEEEEEECCCeEEEEecCCHHHHHHHHHHHHH
Confidence 5678999999999999999999999999999999997 556899999999999999999999999999999999999999
Q ss_pred HHHHcCCccccceeeEEEEEEEEeCCCccChHHHHHHcc-ccccCCCCCceeEEEeCCCceEEEEeccCcEEEEecCCCC
Q psy9199 120 CLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKHR-AAEYEPELHPGVTYRITRPKATLKIFSTGGITVTACNDSN 198 (204)
Q Consensus 120 ~L~~lG~~v~~~~f~v~NIvat~~~~~~I~L~~la~~~~-~~~YePe~fPgliyr~~~pk~t~lIF~sGkivitGak~~~ 198 (204)
+|+++|+++++.+|+|||||||||++|+|||+.||..|+ +++||||+||||+|||.+|+++++||+||||||||||+++
T Consensus 142 ~L~~lg~~~~~~~f~IqNIVas~dl~f~I~Le~la~~~~~~~~YEPE~fPGLiyR~~~pkvvllIF~SGKIviTGaK~~~ 221 (240)
T 1rm1_A 142 IIQKIGFAAKFTDFKIQNIVGSCDVKFPIRLEGLAFSHGTFSSYEPELFPGLIYRMVKPKIVLLIFVSGKIVLTGAKQRE 221 (240)
T ss_dssp HHHHHTCCCCCEEEEEEEEEEEEECSSCBCHHHHHHHTTTTEEEETTTEEEEEEEETTTTEEEEECTTSEEEEEEESSHH
T ss_pred HHHHcCCCcccCcceEEEEEEEEeCCCccCHHHHHHhchhccEECCccCCceEEEeCCCcEEEEEecCCEEEEEecCCHH
Confidence 999999999999999999999999999999999999885 9999999999999999999999999999999999999998
Q ss_pred cccc
Q psy9199 199 KIPV 202 (204)
Q Consensus 199 ~~~~ 202 (204)
+++.
T Consensus 222 ~~~~ 225 (240)
T 1rm1_A 222 EIYQ 225 (240)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8753
No 7
>1rm1_A Tata-box binding protein; yeast TFIIA, TBP protein, ATA-box DNA, transcription/DNA complex; 2.50A {Saccharomyces cerevisiae} SCOP: d.129.1.1 d.129.1.1
Probab=99.97 E-value=1.8e-31 Score=230.01 Aligned_cols=109 Identities=23% Similarity=0.257 Sum_probs=70.8
Q ss_pred EEEEeCCCceEEeecCCHHHHHHHHHHHHHHHHHcCCccccceeeEEEEEEEEeCCCccChHHHHHHccccccCCCCCce
Q psy9199 90 TASIWSSGKITCTGATSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKHRAAEYEPELHPG 169 (204)
Q Consensus 90 tvlIF~SGKivitGakS~e~a~~a~~k~~~~L~~lG~~v~~~~f~v~NIvat~~~~~~I~L~~la~~~~~~~YePe~fPg 169 (204)
--+=|+|||++++|+++.+++++++ +.++++|.++.+..++|||||||++++++|||+.||..+++++||||+|||
T Consensus 26 ~~~~f~sGk~~~s~~~s~~~~~~~~----~~~~~~~~~~~~~~~~I~NIVas~~l~~~ldL~~ia~~~~n~eYePe~Fpg 101 (240)
T 1rm1_A 26 WENQNRDGTKPATTFQSEEDIKRAA----PESEKDTSATSGIVPTLQNIVATVTLGCRLDLKTVALHARNAEYNPKRFAA 101 (240)
T ss_dssp ---------------------------------------CCCCCEEEEEEEEEECCSCCCHHHHHHHBTTEEECTTTCSE
T ss_pred ccccCCCCcceecccccHHHHHHHH----HHHHhhccCcCCCceEEEEEEEEEEcCCccCHHHHHhhCCCcEEcCcccce
Confidence 3467999999999999988877666 455666776667789999999999999999999999988999999999999
Q ss_pred eEEEeCCCceEEEEeccCcEEEEecCCCCcccc
Q psy9199 170 VTYRITRPKATLKIFSTGGITVTACNDSNKIPV 202 (204)
Q Consensus 170 liyr~~~pk~t~lIF~sGkivitGak~~~~~~~ 202 (204)
|+||+.+|+++++||+||||||||||++++++.
T Consensus 102 li~Rl~~Pk~t~lIF~SGKiV~TGaks~e~a~~ 134 (240)
T 1rm1_A 102 VIMRIREPKTTALIFASGKMVVTGAKSEDDSKL 134 (240)
T ss_dssp EEEEEETTEEEEEEETTSEEEEEEESSHHHHHH
T ss_pred EEEEeCCCcEEEEEECCCeEEEEecCCHHHHHH
Confidence 999999999999999999999999999998763
No 8
>2z8u_A Tata-box-binding protein; transcription, DNA-binding protein, transcription factor, transcription regulation; 1.90A {Methanococcus jannaschii}
Probab=99.93 E-value=3.9e-26 Score=190.55 Aligned_cols=88 Identities=27% Similarity=0.348 Sum_probs=82.3
Q ss_pred CCCCceEEEEEEEEEeeCCccChHHHHhcCCCceeeCCC-ceEEEEecCCcEEEEEeCCCceEEeecCCHHHHHHHHHHH
Q psy9199 39 DPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYRREN-GMVTMKLRKPYTTASIWSSGKITCTGATSEDQSKIAARRY 117 (204)
Q Consensus 39 ~~~~~i~I~NVVas~~l~~~ldL~~la~~~~n~eYePe~-g~vi~Rl~~P~~tvlIF~SGKivitGakS~e~a~~a~~k~ 117 (204)
....+++|+|||||++++++|||+.|+..++|++||||+ +.++||+++|+++++||+||||+||||||+++++.|++++
T Consensus 99 ~~~~~~~I~NIVas~~l~~~i~L~~la~~~~~~eYePe~fPgliyR~~~Pk~t~lIF~SGKiviTGaks~~~~~~A~~~i 178 (188)
T 2z8u_A 99 IENPEIKIQNMVATADLGIEPNLDDIALMVEGTEYEPEQFPGLVYRLDDPKVVVLIFGSGKVVITGLKSEEDAKRALKKI 178 (188)
T ss_dssp CSSCCCEEEEEEEEEECSSCCCHHHHHHHSTTEEECTTTSSSEEEEEETTEEEEEECTTSEEEEESCSCHHHHHHHHHHH
T ss_pred cccCceEEEEEEEEEecCCccCHHHHHhhCcCcEECCccCceEEEEeCCCcEEEEEeCCCEEEEEecCCHHHHHHHHHHH
Confidence 346789999999999999999999999999999999997 5558999999999999999999999999999999999999
Q ss_pred HHHHHHcCC
Q psy9199 118 ARCLQRLGF 126 (204)
Q Consensus 118 ~~~L~~lG~ 126 (204)
+++|+++|.
T Consensus 179 ~~~L~~~~~ 187 (188)
T 2z8u_A 179 LDTIKEVQE 187 (188)
T ss_dssp HHHHHHHC-
T ss_pred HHHHHHhcc
Confidence 999999875
No 9
>1mp9_A Tata-binding protein; transcription regulation, DNA-binding protein, transcription factor, DNA binding protein; 2.00A {Sulfolobus acidocaldarius} SCOP: d.129.1.1 d.129.1.1
Probab=99.93 E-value=9e-26 Score=189.70 Aligned_cols=89 Identities=28% Similarity=0.324 Sum_probs=84.0
Q ss_pred CCCceEEEEEEEEEeeCCccChHHHHhcCCCceeeCCC-ceEEEEecCCcEEEEEeCCCceEEeecCCHHHHHHHHHHHH
Q psy9199 40 PEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYRREN-GMVTMKLRKPYTTASIWSSGKITCTGATSEDQSKIAARRYA 118 (204)
Q Consensus 40 ~~~~i~I~NVVas~~l~~~ldL~~la~~~~n~eYePe~-g~vi~Rl~~P~~tvlIF~SGKivitGakS~e~a~~a~~k~~ 118 (204)
...+++|+|||||++++++|||+.|+..++|++||||+ +.++||+++|+++++||+||||+||||||+++++.|+++++
T Consensus 100 ~~~~~~I~NIVas~~l~~~i~L~~la~~~~~~~YePe~fPgliyR~~~Pk~t~lIF~SGKiviTGaks~~~~~~A~~~i~ 179 (198)
T 1mp9_A 100 GKPKIQIQNIVASANLHVIVNLDKAAFLLENNMYEPEQFPGLIYRMDEPRVVLLIFSSGKMVITGAKREDEVHKAVKKIF 179 (198)
T ss_dssp SCCEEEEEEEEEEEECSSEECHHHHHHHSSSEECCTTTCSSEEEEETTTTEEEEECTTSEEEEEEESSHHHHHHHHHHHH
T ss_pred CcCceEEEEEEEEeeCCCccCHHHHHhhcCCcEECCccCCeEEEEeCCCcEEEEEeCCCEEEEEecCCHHHHHHHHHHHH
Confidence 46789999999999999999999999999999999997 55589999999999999999999999999999999999999
Q ss_pred HHHHHcCCcc
Q psy9199 119 RCLQRLGFKA 128 (204)
Q Consensus 119 ~~L~~lG~~v 128 (204)
++|+++|+..
T Consensus 180 ~~L~~~~~~~ 189 (198)
T 1mp9_A 180 DKLVELDCVK 189 (198)
T ss_dssp HHHHHTTCEE
T ss_pred HHHHHhCCCC
Confidence 9999999753
No 10
>1ais_A TBP, protein (tata-binding protein); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: d.129.1.1 d.129.1.1 PDB: 1d3u_A* 1pcz_A
Probab=99.93 E-value=1.4e-25 Score=186.39 Aligned_cols=85 Identities=33% Similarity=0.451 Sum_probs=80.2
Q ss_pred CCCceEEEEEEEEEeeCCccChHHHHhcCCCceeeCCC-ceEEEEecCCcEEEEEeCCCceEEeecCCHHHHHHHHHHHH
Q psy9199 40 PEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYRREN-GMVTMKLRKPYTTASIWSSGKITCTGATSEDQSKIAARRYA 118 (204)
Q Consensus 40 ~~~~i~I~NVVas~~l~~~ldL~~la~~~~n~eYePe~-g~vi~Rl~~P~~tvlIF~SGKivitGakS~e~a~~a~~k~~ 118 (204)
...+++|+|||||++++++|||+.|+..++|++||||+ +.++||+++|+++++||+||||+||||||+++++.|+++++
T Consensus 96 ~~~~~~I~NIVas~~l~~~i~L~~la~~~~~~~YePe~fpgli~R~~~pk~~~lIF~SGKiviTGaks~~~~~~a~~~i~ 175 (182)
T 1ais_A 96 RAPQIDVQNMVFSGDIGREFNLDVVALTLPNCEYEPEQFPGVIYRVKEPKSVILLFSSGKIVCSGAKSEADAWEAVRKLL 175 (182)
T ss_dssp SSCEEEEEEEEEEEECSSCCCHHHHHHHSTTEECCTTTCSSEEEEETTTTEEEEECTTSEEEEEEESSHHHHHHHHHHHH
T ss_pred cccceEEEEEEEEEEcCCccCHHHHHhhCCCCEECCccCceEEEEeCCCcEEEEEecCCEEEEEecCCHHHHHHHHHHHH
Confidence 46789999999999999999999999999999999998 44579999999999999999999999999999999999999
Q ss_pred HHHHHc
Q psy9199 119 RCLQRL 124 (204)
Q Consensus 119 ~~L~~l 124 (204)
++|+++
T Consensus 176 ~~L~~~ 181 (182)
T 1ais_A 176 RELDKY 181 (182)
T ss_dssp HHHTTC
T ss_pred HHHHHh
Confidence 999764
No 11
>1ytb_A Protein (tata binding protein (TBP)); protein-DNA complex, transcription/DNA complex; HET: DNA; 1.80A {Saccharomyces cerevisiae} SCOP: d.129.1.1 d.129.1.1 PDB: 1ngm_A* 1tba_B 1nh2_A* 1ytf_A* 1tbp_A 1qna_A* 1qn3_A* 1qn5_A* 1qn6_A* 1qn7_A* 1qn8_A* 1qn9_A* 1qn4_A* 1qnb_A* 1qnc_A* 1qne_A* 1vok_A 1vol_B* 1vto_A* 1vtl_E* ...
Probab=99.92 E-value=2.2e-25 Score=184.84 Aligned_cols=71 Identities=25% Similarity=0.419 Sum_probs=68.1
Q ss_pred eeeEEEEEEEEeCCCccChHHHHHHccccccCCCCCceeEEEeCCCceEEEEeccCcEEEEecCCCCcccc
Q psy9199 132 NFRVVNVLGTCSMPFAIRILQFSEKHRAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKIPV 202 (204)
Q Consensus 132 ~f~v~NIvat~~~~~~I~L~~la~~~~~~~YePe~fPgliyr~~~pk~t~lIF~sGkivitGak~~~~~~~ 202 (204)
.++|||||||++++++|||++||...++++||||+||||+||+.+|+++++||+||||+||||||+++++.
T Consensus 4 ~~~I~NiVas~~l~~~ldL~~ia~~~~n~eYePe~fpgli~R~~~Pk~~~lIF~SGKiv~TGaks~e~~~~ 74 (180)
T 1ytb_A 4 VPTLQNIVATVTLGCRLDLKTVALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGAKSEDDSKL 74 (180)
T ss_dssp CCEEEEEEEEEECCSCCCHHHHHHHSSSEECCTTTCSSEEEEETTTTEEEEECTTSEEEEEEESSHHHHHH
T ss_pred ceEEEEEEEEEEcCCccCHHHHHhhCCCCEECccccCCEEEEeCCCcEEEEEECCCeEEEEecCCHHHHHH
Confidence 57899999999999999999999988999999999999999999999999999999999999999998753
No 12
>3eik_A Tata-box-binding protein; DNA-binding, initiation factor, nucleus, transcription; 1.90A {Encephalitozoon cuniculi} PDB: 3oci_A 3oc3_C
Probab=99.87 E-value=3.1e-22 Score=170.24 Aligned_cols=84 Identities=26% Similarity=0.278 Sum_probs=78.4
Q ss_pred CCceEEEEEEEEEeeCCccChHHHHhc-CCCceeeCCC-ceEEEEecCCcEEEEEeCCCceEEeecCCHHHHHHHHHHHH
Q psy9199 41 EVDIIINNVVCSFSVRCHLNLRQIALN-GVNVEYRREN-GMVTMKLRKPYTTASIWSSGKITCTGATSEDQSKIAARRYA 118 (204)
Q Consensus 41 ~~~i~I~NVVas~~l~~~ldL~~la~~-~~n~eYePe~-g~vi~Rl~~P~~tvlIF~SGKivitGakS~e~a~~a~~k~~ 118 (204)
..+++|+|||||++++++|||+.|+.. .++++||||+ +.++||+.+|+++++||+||||+|||||++++++.|++++.
T Consensus 130 ~~~fkIqNIvas~dl~f~I~Le~la~~~~~~~~YEPE~fPGliyR~~~pkvt~lIF~SGKiviTGaks~~d~~~A~~~I~ 209 (218)
T 3eik_A 130 FDDFKIQNIVSSCDIKFSIRLEGLAYAHSNYCSYEPELFPGLIYRMVKPKIVLLIFVSGKIVLTGAKVRDDIYQAFNNIY 209 (218)
T ss_dssp CEEEEEEEEEEEEECSSCBCHHHHHHHSTTTEECCTTTSSSEEEEETTTTEEEEECTTSEEEEEEESSHHHHHHHHHHHH
T ss_pred cccceEEEEEEEEECCCcCcHHHHHHhccCCcEECCccCceEEEEcCCCCEEEEEeCCCeEEEEecCCHHHHHHHHHHHH
Confidence 468999999999999999999999976 4889999997 55589999999999999999999999999999999999999
Q ss_pred HHHHHc
Q psy9199 119 RCLQRL 124 (204)
Q Consensus 119 ~~L~~l 124 (204)
.+|.+.
T Consensus 210 p~L~~f 215 (218)
T 3eik_A 210 PVLIQH 215 (218)
T ss_dssp HHHHHT
T ss_pred HHHHHh
Confidence 999875
No 13
>2d0b_A RNAse HIII, ribonuclease HIII; RNA/DNA hybrid, hydrolase; 2.10A {Geobacillus stearothermophilus} PDB: 2d0a_A 2d0c_A 3asm_A
Probab=91.02 E-value=0.32 Score=42.74 Aligned_cols=32 Identities=22% Similarity=0.520 Sum_probs=27.3
Q ss_pred ceEEEEecCCcEEEEEeCCCceEEeecCCHHHH
Q psy9199 78 GMVTMKLRKPYTTASIWSSGKITCTGATSEDQS 110 (204)
Q Consensus 78 g~vi~Rl~~P~~tvlIF~SGKivitGakS~e~a 110 (204)
+. +++.+.+.+++.+|.|||++..|..+++.+
T Consensus 31 ~~-~f~~k~~~~~it~Y~SGkv~~qG~~a~~~~ 62 (310)
T 2d0b_A 31 GA-LFAVKRPDVVITAYRSGKVLFQGKAAEQEA 62 (310)
T ss_dssp TE-EEEECCTTCEEEEETTSEEEEESTTHHHHH
T ss_pred Ce-EEEecCCCeEEEEEeCCEEEEeCCchHHHH
Confidence 77 599999999999999999999997554433
No 14
>3vn5_A RNAse HIII, ribonuclease HIII; hydrolase; 1.98A {Aquifex aeolicus}
Probab=90.14 E-value=0.076 Score=45.70 Aligned_cols=39 Identities=10% Similarity=0.228 Sum_probs=32.7
Q ss_pred cCCCCCceeEEEeCCCceEEEEeccCcEEEEecCCCCcc
Q psy9199 162 YEPELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200 (204)
Q Consensus 162 YePe~fPgliyr~~~pk~t~lIF~sGkivitGak~~~~~ 200 (204)
.++..=|+..|+.+.+++++.++.||||++.|...+.++
T Consensus 23 ~~~~~~~~~~f~~k~~~~~it~Y~SGkv~fqG~~a~~~a 61 (257)
T 3vn5_A 23 FRKINAPYTLWALEGNGVKVYYYKTGSLLIQGKNSEKVL 61 (257)
T ss_dssp CEECCCTTCSEEEEETTEEEEECTTSEEEEESTTHHHHH
T ss_pred ccccCCCceEEEEecCCeEEEEEeccEEEEeCCCHHHHH
Confidence 345567899999999999999999999999998765443
No 15
>2d0b_A RNAse HIII, ribonuclease HIII; RNA/DNA hybrid, hydrolase; 2.10A {Geobacillus stearothermophilus} PDB: 2d0a_A 2d0c_A 3asm_A
Probab=89.70 E-value=0.24 Score=43.52 Aligned_cols=39 Identities=13% Similarity=0.337 Sum_probs=32.3
Q ss_pred ccCC-CCCceeEEEeCCCceEEEEeccCcEEEEecCCCCc
Q psy9199 161 EYEP-ELHPGVTYRITRPKATLKIFSTGGITVTACNDSNK 199 (204)
Q Consensus 161 ~YeP-e~fPgliyr~~~pk~t~lIF~sGkivitGak~~~~ 199 (204)
.|+. ..-|+..|+...+++++.++.||||++.|...+.+
T Consensus 22 ~~~~~~~~~~~~f~~k~~~~~it~Y~SGkv~~qG~~a~~~ 61 (310)
T 2d0b_A 22 GALSDRLPAGALFAVKRPDVVITAYRSGKVLFQGKAAEQE 61 (310)
T ss_dssp TCBCSSCCTTEEEEECCTTCEEEEETTSEEEEESTTHHHH
T ss_pred hhcccCCCCCeEEEecCCCeEEEEEeCCEEEEeCCchHHH
Confidence 3444 45689999999999999999999999999776543
No 16
>3vn5_A RNAse HIII, ribonuclease HIII; hydrolase; 1.98A {Aquifex aeolicus}
Probab=87.22 E-value=0.4 Score=41.20 Aligned_cols=33 Identities=18% Similarity=0.144 Sum_probs=27.2
Q ss_pred ceEEEEecCCcEEEEEeCCCceEEeecCCHHHHH
Q psy9199 78 GMVTMKLRKPYTTASIWSSGKITCTGATSEDQSK 111 (204)
Q Consensus 78 g~vi~Rl~~P~~tvlIF~SGKivitGakS~e~a~ 111 (204)
+. .++.+.+.+++.+|.|||++..|...++.+.
T Consensus 30 ~~-~f~~k~~~~~it~Y~SGkv~fqG~~a~~~a~ 62 (257)
T 3vn5_A 30 YT-LWALEGNGVKVYYYKTGSLLIQGKNSEKVLK 62 (257)
T ss_dssp TC-SEEEEETTEEEEECTTSEEEEESTTHHHHHH
T ss_pred ce-EEEEecCCeEEEEEeccEEEEeCCCHHHHHH
Confidence 66 4888899999999999999999975544443
No 17
>1dby_A Chloroplast thioredoxin M CH2; thioredoxin CH2, chloroplastic thioredoxin, oxidoreductase; NMR {Chlamydomonas reinhardtii} SCOP: c.47.1.1
Probab=64.45 E-value=11 Score=25.48 Aligned_cols=29 Identities=21% Similarity=0.342 Sum_probs=23.4
Q ss_pred EEEEEeCCCceE--EeecCCHHHHHHHHHHH
Q psy9199 89 TTASIWSSGKIT--CTGATSEDQSKIAARRY 117 (204)
Q Consensus 89 ~tvlIF~SGKiv--itGakS~e~a~~a~~k~ 117 (204)
.++.+|++|+++ ..|..+.++.+..++++
T Consensus 75 Pt~~~~~~G~~~~~~~G~~~~~~l~~~l~~~ 105 (107)
T 1dby_A 75 PTIMVFKGGKKCETIIGAVPKATIVQTVEKY 105 (107)
T ss_dssp CEEEEESSSSEEEEEESCCCHHHHHHHHHHH
T ss_pred CEEEEEeCCEEEEEEeCCCCHHHHHHHHHHH
Confidence 367889999996 67998988888777765
No 18
>1t00_A Thioredoxin, TRX; redox regulation, multifunction macromolecule, electron transport; 1.51A {Streptomyces coelicolor}
Probab=61.69 E-value=8.5 Score=26.32 Aligned_cols=30 Identities=13% Similarity=0.309 Sum_probs=23.9
Q ss_pred EEEEEeCCCceE--EeecCCHHHHHHHHHHHH
Q psy9199 89 TTASIWSSGKIT--CTGATSEDQSKIAARRYA 118 (204)
Q Consensus 89 ~tvlIF~SGKiv--itGakS~e~a~~a~~k~~ 118 (204)
.++.+|.+|+++ ..|..+.++....+++++
T Consensus 79 Pt~~~~~~G~~~~~~~G~~~~~~l~~~l~~~l 110 (112)
T 1t00_A 79 PTLNVYQGGEVAKTIVGAKPKAAIVRDLEDFI 110 (112)
T ss_dssp SEEEEEETTEEEEEEESCCCHHHHHHHTHHHH
T ss_pred cEEEEEeCCEEEEEEeCCCCHHHHHHHHHHHh
Confidence 378889999997 789989888887776553
No 19
>3gnj_A Thioredoxin domain protein; APC92103, STR genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 1.99A {Desulfitobacterium hafniense dcb-2} SCOP: c.47.1.0
Probab=61.48 E-value=12 Score=25.38 Aligned_cols=30 Identities=10% Similarity=0.189 Sum_probs=24.5
Q ss_pred EEEEEeCCCceE--EeecCCHHHHHHHHHHHH
Q psy9199 89 TTASIWSSGKIT--CTGATSEDQSKIAARRYA 118 (204)
Q Consensus 89 ~tvlIF~SGKiv--itGakS~e~a~~a~~k~~ 118 (204)
.++.+|.+|+.+ ..|..+.++.+..+++++
T Consensus 78 Pt~~~~~~g~~~~~~~g~~~~~~l~~~l~~~l 109 (111)
T 3gnj_A 78 PQILYFKDGEYKGKMAGDVEDDEVEQMIADVL 109 (111)
T ss_dssp CEEEEEETTEEEEEEESSCCHHHHHHHHHHHH
T ss_pred CEEEEEECCEEEEEEeccCCHHHHHHHHHHHh
Confidence 478888999986 679999998888877654
No 20
>2trx_A Thioredoxin; electron transport; 1.68A {Escherichia coli} SCOP: c.47.1.1 PDB: 1skr_B* 1skw_B* 1sl0_B* 1sks_B* 1sl2_B* 1t7p_B* 1t8e_B* 1tk0_B* 1tk5_B* 1tk8_B* 1tkd_B* 1sl1_B* 1x9s_B* 1x9w_B* 1xoa_A 1xob_A 1zyq_B* 2ajq_B* 2bto_T* 2h6x_A ...
Probab=61.10 E-value=11 Score=25.42 Aligned_cols=29 Identities=24% Similarity=0.253 Sum_probs=23.0
Q ss_pred EEEEEeCCCceE--EeecCCHHHHHHHHHHH
Q psy9199 89 TTASIWSSGKIT--CTGATSEDQSKIAARRY 117 (204)
Q Consensus 89 ~tvlIF~SGKiv--itGakS~e~a~~a~~k~ 117 (204)
.++.+|.+|+++ ..|..+.++.+..++++
T Consensus 76 Pt~~~~~~G~~~~~~~G~~~~~~l~~~l~~~ 106 (108)
T 2trx_A 76 PTLLLFKNGEVAATKVGALSKGQLKEFLDAN 106 (108)
T ss_dssp SEEEEEETTEEEEEEESCCCHHHHHHHHHHH
T ss_pred CEEEEEeCCEEEEEEecCCCHHHHHHHHHHh
Confidence 477788999986 67888988888777654
No 21
>3tco_A Thioredoxin (TRXA-1); disulfide oxidoreductase, oxidoreductase; 1.90A {Sulfolobus solfataricus} SCOP: c.47.1.0
Probab=60.81 E-value=8.2 Score=25.94 Aligned_cols=30 Identities=27% Similarity=0.483 Sum_probs=23.9
Q ss_pred EEEEEeCCCceE--EeecCCHHHHHHHHHHHH
Q psy9199 89 TTASIWSSGKIT--CTGATSEDQSKIAARRYA 118 (204)
Q Consensus 89 ~tvlIF~SGKiv--itGakS~e~a~~a~~k~~ 118 (204)
.++.+|.+|+++ ..|..+.++....+++++
T Consensus 77 Pt~~~~~~g~~~~~~~g~~~~~~l~~~l~~~l 108 (109)
T 3tco_A 77 PTTLIFVNGQLVDSLVGAVDEDTLESTVNKYL 108 (109)
T ss_dssp SEEEEEETTEEEEEEESCCCHHHHHHHHHHHC
T ss_pred CEEEEEcCCcEEEeeeccCCHHHHHHHHHHHh
Confidence 477788999987 578889998888877653
No 22
>2es7_A Q8ZP25_salty, putative thiol-disulfide isomerase and thioredoxi; structural genomics, PSI, protein structure initiative; 2.80A {Salmonella typhimurium} SCOP: c.47.1.20 PDB: 2gzp_A 2jzt_A
Probab=60.36 E-value=10 Score=28.51 Aligned_cols=30 Identities=13% Similarity=0.230 Sum_probs=21.7
Q ss_pred EEEEEeCCCceE--EeecCCHHHHHHHHHHHH
Q psy9199 89 TTASIWSSGKIT--CTGATSEDQSKIAARRYA 118 (204)
Q Consensus 89 ~tvlIF~SGKiv--itGakS~e~a~~a~~k~~ 118 (204)
.|+++|++||++ ..|..+.++++..++++.
T Consensus 93 PT~~~fk~G~~v~~~~G~~~~~~l~~~i~~~l 124 (142)
T 2es7_A 93 PATLVFTDGKLRGALSGIHPWAELLTLMRSIV 124 (142)
T ss_dssp SEEEEESCC----CEESCCCHHHHHHHHHHHH
T ss_pred CeEEEEeCCEEEEEEeCCCCHHHHHHHHHHHh
Confidence 488899999986 689989888877776554
No 23
>1fb6_A Thioredoxin M; electron transport; 2.10A {Spinacia oleracea} SCOP: c.47.1.1 PDB: 1fb0_A 1gl8_A 2puk_C
Probab=59.37 E-value=12 Score=24.86 Aligned_cols=29 Identities=17% Similarity=0.306 Sum_probs=23.3
Q ss_pred EEEEEeCCCceE--EeecCCHHHHHHHHHHH
Q psy9199 89 TTASIWSSGKIT--CTGATSEDQSKIAARRY 117 (204)
Q Consensus 89 ~tvlIF~SGKiv--itGakS~e~a~~a~~k~ 117 (204)
.++.+|.+|+++ ..|..+.++.+..++++
T Consensus 74 Pt~~~~~~g~~~~~~~G~~~~~~l~~~l~~~ 104 (105)
T 1fb6_A 74 PTVLFFKNGERKESIIGAVPKSTLTDSIEKY 104 (105)
T ss_dssp SEEEEEETTEEEEEEEECCCHHHHHHHHHHH
T ss_pred cEEEEEeCCeEEEEEecCCCHHHHHHHHHhh
Confidence 378889999986 57998988888777754
No 24
>1thx_A Thioredoxin, thioredoxin 2; oxido-reductase, electron transport; 1.60A {Nostoc SP} SCOP: c.47.1.1
Probab=58.45 E-value=13 Score=25.22 Aligned_cols=30 Identities=13% Similarity=0.059 Sum_probs=23.6
Q ss_pred EEEEEeCCCceE--EeecCCHHHHHHHHHHHH
Q psy9199 89 TTASIWSSGKIT--CTGATSEDQSKIAARRYA 118 (204)
Q Consensus 89 ~tvlIF~SGKiv--itGakS~e~a~~a~~k~~ 118 (204)
.++.+|.+|+++ ..|..+.++.+..++++.
T Consensus 81 Pt~~~~~~G~~~~~~~g~~~~~~l~~~l~~~l 112 (115)
T 1thx_A 81 PALRLVKGEQILDSTEGVISKDKLLSFLDTHL 112 (115)
T ss_dssp SEEEEEETTEEEEEEESCCCHHHHHHHHHHHH
T ss_pred eEEEEEcCCEEEEEecCCCCHHHHHHHHHHHh
Confidence 477788999987 578889888887777653
No 25
>2o8v_B Thioredoxin 1; disulfide crosslinked complex, oxidoreductase; 3.00A {Escherichia coli}
Probab=58.33 E-value=12 Score=26.91 Aligned_cols=30 Identities=23% Similarity=0.232 Sum_probs=23.9
Q ss_pred EEEEEeCCCceE--EeecCCHHHHHHHHHHHH
Q psy9199 89 TTASIWSSGKIT--CTGATSEDQSKIAARRYA 118 (204)
Q Consensus 89 ~tvlIF~SGKiv--itGakS~e~a~~a~~k~~ 118 (204)
.++.+|.+|+++ ..|..+.++.+..+++++
T Consensus 96 Pt~~~~~~G~~~~~~~G~~~~~~l~~~l~~~l 127 (128)
T 2o8v_B 96 PTLLLFKNGEVAATKVGALSKGQLKEFLDANL 127 (128)
T ss_dssp SEEEEEETTEEEEEEESCCCHHHHHHHHHHHH
T ss_pred CEEEEEeCCEEEEEEcCCCCHHHHHHHHHHhh
Confidence 477788999987 789989988888777653
No 26
>1kng_A Thiol:disulfide interchange protein CYCY; thioredoxin fold, cytochrome C maturation, atomic resolution oxidoreductase; 1.14A {Bradyrhizobium japonicum} SCOP: c.47.1.10
Probab=56.95 E-value=13 Score=26.79 Aligned_cols=33 Identities=15% Similarity=0.090 Sum_probs=26.7
Q ss_pred EEEEEeCCCceE--EeecCCHHHHHHHHHHHHHHH
Q psy9199 89 TTASIWSSGKIT--CTGATSEDQSKIAARRYARCL 121 (204)
Q Consensus 89 ~tvlIF~SGKiv--itGakS~e~a~~a~~k~~~~L 121 (204)
.+++|..+|+++ ..|..+.++....++++++.+
T Consensus 120 ~~~~id~~G~i~~~~~g~~~~~~l~~~l~~~l~~~ 154 (156)
T 1kng_A 120 ETFVVGREGTIVYKLVGPITPDNLRSVLLPQMEKA 154 (156)
T ss_dssp EEEEECTTSBEEEEEESCCCHHHHHHTHHHHHHHH
T ss_pred eEEEEcCCCCEEEEEeCCCCHHHHHHHHHHHHHHH
Confidence 577888999996 578889999988888777654
No 27
>2jvf_A De novo protein M7; tetrapeptide fragment-based protein design, artificial fold; NMR {Unidentified} SCOP: k.41.1.1
Probab=56.44 E-value=15 Score=26.08 Aligned_cols=24 Identities=42% Similarity=0.582 Sum_probs=22.3
Q ss_pred cCCHHHHHHHHHHHHHHHHHcCCc
Q psy9199 104 ATSEDQSKIAARRYARCLQRLGFK 127 (204)
Q Consensus 104 akS~e~a~~a~~k~~~~L~~lG~~ 127 (204)
|.+.|++++-++-+++.|+++||+
T Consensus 56 aendeqakelleliarllqklgyk 79 (96)
T 2jvf_A 56 AENDEQAKELLELIARLLQKLGYK 79 (96)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHTCS
T ss_pred ecChHHHHHHHHHHHHHHHHhCCC
Confidence 679999999999999999999985
No 28
>2i4a_A Thioredoxin; acidophIle, disulfide exchange, oxidoreductase; 1.00A {Acetobacter aceti}
Probab=56.07 E-value=11 Score=25.16 Aligned_cols=28 Identities=25% Similarity=0.234 Sum_probs=22.1
Q ss_pred EEEEEeCCCceE--EeecCCHHHHHHHHHH
Q psy9199 89 TTASIWSSGKIT--CTGATSEDQSKIAARR 116 (204)
Q Consensus 89 ~tvlIF~SGKiv--itGakS~e~a~~a~~k 116 (204)
.++.+|.+|+++ ..|..+.++....+++
T Consensus 76 Pt~~~~~~G~~~~~~~G~~~~~~l~~~l~~ 105 (107)
T 2i4a_A 76 PTLMLVRDGKVIDKKVGALPKSQLKAWVES 105 (107)
T ss_dssp SEEEEEETTEEEEEEESCCCHHHHHHHHHH
T ss_pred CEEEEEeCCEEEEEecCCCCHHHHHHHHHh
Confidence 477888999997 6788888887776654
No 29
>1w4v_A Thioredoxin, mitochondrial; antioxidant enzyme, mitochondrion, electron TRA oxidoreductase; 1.80A {Homo sapiens} PDB: 1uvz_A 1w89_A
Probab=55.86 E-value=15 Score=25.77 Aligned_cols=103 Identities=13% Similarity=0.188 Sum_probs=47.1
Q ss_pred eeeecCCCCCCCCCCCCccccCCCCCCCCCCCCCCCceEEEEEEEEEeeCCcc---ChHHHHhcCC-Ccee---eCCC-c
Q psy9199 7 TTTHSSHSEQEPPPTQTVVPIQNHAPPQPPAHDPEVDIIINNVVCSFSVRCHL---NLRQIALNGV-NVEY---RREN-G 78 (204)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~i~e~~~~~~~~~~~~~~i~I~NVVas~~l~~~l---dL~~la~~~~-n~eY---ePe~-g 78 (204)
+++|++|+.+..-...+-.+..+...+ .-.+.+..+.+.---.|.- .|++++.... +..+ +-+. +
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~f~~~v~~-------~~k~vlv~f~a~~C~~C~~~~~~l~~~~~~~~~~v~~~~vd~d~~~ 75 (119)
T 1w4v_A 3 GSHHHHHHGSTTFNIQDGPDFQDRVVN-------SETPVVVDFHAQWCGPCKILGPRLEKMVAKQHGKVVMAKVDIDDHT 75 (119)
T ss_dssp -------CCCSEEECCSHHHHHHHTTT-------CSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTSSEEEEEETTTTH
T ss_pred CccccccCCceEEEecChhhHHHHHHc-------CCCcEEEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEeCCCCH
Confidence 577888888776655555554443311 1123344554432223322 2445554432 2221 1111 1
Q ss_pred eE--EEEecCCcEEEEEeCCCceE--EeecCCHHHHHHHHHHH
Q psy9199 79 MV--TMKLRKPYTTASIWSSGKIT--CTGATSEDQSKIAARRY 117 (204)
Q Consensus 79 ~v--i~Rl~~P~~tvlIF~SGKiv--itGakS~e~a~~a~~k~ 117 (204)
.+ .+++. --.++.+|++|+++ ..|..+.++....++++
T Consensus 76 ~l~~~~~v~-~~Pt~~~~~~G~~~~~~~G~~~~~~l~~~l~~~ 117 (119)
T 1w4v_A 76 DLAIEYEVS-AVPTVLAMKNGDVVDKFVGIKDEDQLEAFLKKL 117 (119)
T ss_dssp HHHHHTTCC-SSSEEEEEETTEEEEEEESCCCHHHHHHHHHHH
T ss_pred HHHHHcCCC-cccEEEEEeCCcEEEEEcCCCCHHHHHHHHHHH
Confidence 10 01111 12377788999986 67888888887777655
No 30
>3qfa_C Thioredoxin; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_C*
Probab=54.77 E-value=14 Score=25.92 Aligned_cols=104 Identities=11% Similarity=0.211 Sum_probs=49.2
Q ss_pred ceeeecCCCCCCCCCCCCccccCCCCCCCCCCCCCCCceEEEEEEEEEeeCCcc---ChHHHHhcCCCcee---eCCC-c
Q psy9199 6 MTTTHSSHSEQEPPPTQTVVPIQNHAPPQPPAHDPEVDIIINNVVCSFSVRCHL---NLRQIALNGVNVEY---RREN-G 78 (204)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~i~e~~~~~~~~~~~~~~i~I~NVVas~~l~~~l---dL~~la~~~~n~eY---ePe~-g 78 (204)
|.++|+.++..++.+..+..+..+..... .-.+.+.++.+.---.|.- .|++++...++..+ +-+. .
T Consensus 1 ~~~~~~~~~~~~~~~~~t~~~f~~~l~~~------~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~v~~~~vd~d~~~ 74 (116)
T 3qfa_C 1 MRGSHHHHHHGSVKQIESKTAFQEALDAA------GDKLVVVDFSATWCGPSKMIKPFFHSLSEKYSNVIFLEVDVDDCQ 74 (116)
T ss_dssp -----------CCBCCCCHHHHHHHHHHH------TTSCEEEEEECTTCHHHHHHHHHHHHHHTTCTTSEEEEEETTTTH
T ss_pred CCCccccccCCcccCCCCHHHHHHHHHhc------CCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCH
Confidence 34567777777777777666666544211 1123355665543333433 45556655544332 1111 0
Q ss_pred eE--EEEecCCcEEEEEeCCCceE--EeecCCHHHHHHHHHHH
Q psy9199 79 MV--TMKLRKPYTTASIWSSGKIT--CTGATSEDQSKIAARRY 117 (204)
Q Consensus 79 ~v--i~Rl~~P~~tvlIF~SGKiv--itGakS~e~a~~a~~k~ 117 (204)
.+ .+.++ --.++++|.+|+++ ..|. +.++++..++++
T Consensus 75 ~l~~~~~v~-~~Pt~~~~~~G~~~~~~~G~-~~~~l~~~l~~~ 115 (116)
T 3qfa_C 75 DVASECEVK-SMPTFQFFKKGQKVGEFSGA-NKEKLEATINEL 115 (116)
T ss_dssp HHHHHTTCC-SSSEEEEESSSSEEEEEESC-CHHHHHHHHHHH
T ss_pred HHHHHcCCc-cccEEEEEeCCeEEEEEcCC-CHHHHHHHHHHh
Confidence 00 01111 12478899999987 5688 888888777654
No 31
>4euy_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; 2.90A {Bacillus cereus}
Probab=54.73 E-value=7.5 Score=26.56 Aligned_cols=74 Identities=11% Similarity=0.080 Sum_probs=40.9
Q ss_pred ceEEEEEEEEEeeCCcc---ChHHHHhcCCCcee---eCCC-ceE--EEEecCCcEEEEEeCCCceEE--eecCCHHHHH
Q psy9199 43 DIIINNVVCSFSVRCHL---NLRQIALNGVNVEY---RREN-GMV--TMKLRKPYTTASIWSSGKITC--TGATSEDQSK 111 (204)
Q Consensus 43 ~i~I~NVVas~~l~~~l---dL~~la~~~~n~eY---ePe~-g~v--i~Rl~~P~~tvlIF~SGKivi--tGakS~e~a~ 111 (204)
.+.+.++.++---.|.- .|++++...++..+ +-+. +.+ .+.++. -.|+++|.+|+++- .|..+.++..
T Consensus 19 ~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~vd~~~~~~l~~~~~v~~-~Pt~~~~~~G~~~~~~~g~~~~~~l~ 97 (105)
T 4euy_A 19 QLVLLFIKTENCGVCDVMLRKVNYVLENYNYVEKIEILLQDMQEIAGRYAVFT-GPTVLLFYNGKEILRESRFISLENLE 97 (105)
T ss_dssp SEEEEEEEESSCHHHHHHHHHHHHHHHTCTTEEEEEEEECCC---------CC-CCEEEEEETTEEEEEEESSCCHHHHH
T ss_pred CCEEEEEeCCCCcchHHHHHHHHHHHHHcCCceEEEEECCCCHHHHHhcCCCC-CCEEEEEeCCeEEEEEeCCcCHHHHH
Confidence 44566666654444533 45566655544332 1111 111 123322 35888999999875 7998998888
Q ss_pred HHHHHH
Q psy9199 112 IAARRY 117 (204)
Q Consensus 112 ~a~~k~ 117 (204)
..++++
T Consensus 98 ~~l~~~ 103 (105)
T 4euy_A 98 RTIQLF 103 (105)
T ss_dssp HHHHTT
T ss_pred HHHHHh
Confidence 777654
No 32
>2e0q_A Thioredoxin; electron transport; 1.49A {Sulfolobus tokodaii} PDB: 3hhv_A
Probab=54.12 E-value=18 Score=23.78 Aligned_cols=30 Identities=17% Similarity=0.308 Sum_probs=23.4
Q ss_pred EEEEEeCCCceE--EeecCCHHHHHHHHHHHH
Q psy9199 89 TTASIWSSGKIT--CTGATSEDQSKIAARRYA 118 (204)
Q Consensus 89 ~tvlIF~SGKiv--itGakS~e~a~~a~~k~~ 118 (204)
.++.+|++|+++ ..|..+.++....++++.
T Consensus 71 Pt~~~~~~g~~~~~~~g~~~~~~l~~~l~~~l 102 (104)
T 2e0q_A 71 PTVIFFKDGEPVDEIIGAVPREEIEIRIKNLL 102 (104)
T ss_dssp CEEEEEETTEEEEEEESCCCHHHHHHHHHHHH
T ss_pred CEEEEEECCeEhhhccCCCCHHHHHHHHHHHh
Confidence 477788999985 578888888887777654
No 33
>1ep7_A Thioredoxin CH1, H-type; electron transport; 2.10A {Chlamydomonas reinhardtii} SCOP: c.47.1.1 PDB: 1tof_A 1ep8_A
Probab=53.84 E-value=16 Score=24.70 Aligned_cols=28 Identities=29% Similarity=0.362 Sum_probs=21.7
Q ss_pred EEEEeCCCceE--EeecCCHHHHHHHHHHHH
Q psy9199 90 TASIWSSGKIT--CTGATSEDQSKIAARRYA 118 (204)
Q Consensus 90 tvlIF~SGKiv--itGakS~e~a~~a~~k~~ 118 (204)
++++|.+|+++ ..|. +.++++..+++++
T Consensus 81 t~~~~~~G~~~~~~~G~-~~~~l~~~l~~~l 110 (112)
T 1ep7_A 81 TFHVYKDGVKADDLVGA-SQDKLKALVAKHA 110 (112)
T ss_dssp EEEEEETTEEEEEEESC-CHHHHHHHHHHHH
T ss_pred EEEEEECCeEEEEEcCC-CHHHHHHHHHHHh
Confidence 68889999985 6788 8888777776553
No 34
>3gix_A Thioredoxin-like protein 4B; PRE-mRNA splicing, TXNL4B, DLP, cell cycle, mRNA processing, mRNA splicing, nucleus, phosphoprotein, splicing; HET: SUC; 1.33A {Homo sapiens} SCOP: c.47.1.0 PDB: 1xbs_A
Probab=52.16 E-value=21 Score=26.62 Aligned_cols=34 Identities=12% Similarity=0.073 Sum_probs=28.8
Q ss_pred EEEEeCCCceE-----------Eee-cCCHHHHHHHHHHHHHHHHH
Q psy9199 90 TASIWSSGKIT-----------CTG-ATSEDQSKIAARRYARCLQR 123 (204)
Q Consensus 90 tvlIF~SGKiv-----------itG-akS~e~a~~a~~k~~~~L~~ 123 (204)
|+++|..|+++ ..| ..+.++....++.+.+-.++
T Consensus 80 t~~~~~~G~~v~~~~g~~~~~~~~G~~~~~~~l~~~l~~~~~~~~~ 125 (149)
T 3gix_A 80 STVFFFNGQHMKVDYGSPDHTKFVGSFKTKQDFIDLIEVIYRGAMR 125 (149)
T ss_dssp EEEEEETTEEEEEECSSSCCSCEESCCSSHHHHHHHHHHHHHHHHT
T ss_pred eEEEEECCeEEEeecCCCCCCeEeeecCCHHHHHHHHHHHHHHhhc
Confidence 55599999998 889 89999999999988876654
No 35
>3m9j_A Thioredoxin; oxidoreductase; 1.10A {Homo sapiens} SCOP: c.47.1.1 PDB: 3m9k_A 2hsh_A 1erv_A 2ifq_A 2ifq_B 1auc_A 1eru_A 1ert_A 3kd0_A 1aiu_A 3trx_A 4trx_A 1trs_A 1tru_A 1trv_A 1trw_A 3e3e_A* 1cqg_A 1cqh_A 1mdi_A ...
Probab=51.87 E-value=13 Score=24.76 Aligned_cols=28 Identities=14% Similarity=0.312 Sum_probs=22.0
Q ss_pred EEEEEeCCCceE--EeecCCHHHHHHHHHHH
Q psy9199 89 TTASIWSSGKIT--CTGATSEDQSKIAARRY 117 (204)
Q Consensus 89 ~tvlIF~SGKiv--itGakS~e~a~~a~~k~ 117 (204)
.++.+|.+|+.+ ..|. +.++.+..++++
T Consensus 75 Pt~~~~~~g~~~~~~~g~-~~~~l~~~l~~~ 104 (105)
T 3m9j_A 75 PTFQFFKKGQKVGEFSGA-NKEKLEATINEL 104 (105)
T ss_dssp SEEEEEETTEEEEEEESS-CHHHHHHHHHHH
T ss_pred cEEEEEECCeEEEEEeCC-CHHHHHHHHHHh
Confidence 478888999996 6788 888887777654
No 36
>1v98_A Thioredoxin; oxidoreductase, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.82A {Thermus thermophilus}
Probab=51.31 E-value=18 Score=25.94 Aligned_cols=30 Identities=20% Similarity=0.263 Sum_probs=23.8
Q ss_pred EEEEEeCCCceE--EeecCCHHHHHHHHHHHH
Q psy9199 89 TTASIWSSGKIT--CTGATSEDQSKIAARRYA 118 (204)
Q Consensus 89 ~tvlIF~SGKiv--itGakS~e~a~~a~~k~~ 118 (204)
.++.+|.+|+++ ..|..+.++....+++++
T Consensus 106 Pt~~~~~~G~~~~~~~G~~~~~~l~~~i~~~l 137 (140)
T 1v98_A 106 PTLVLFRRGAPVATWVGASPRRVLEERLRPYL 137 (140)
T ss_dssp SEEEEEETTEEEEEEESCCCHHHHHHHHHHHH
T ss_pred CEEEEEeCCcEEEEEeCCCCHHHHHHHHHHHH
Confidence 378889999987 789888888877776543
No 37
>3hz4_A Thioredoxin; NYSGXRC, PSI-II, reduced form, protein structure initiative, structural genomics; 2.30A {Methanosarcina mazei}
Probab=50.60 E-value=20 Score=25.90 Aligned_cols=35 Identities=17% Similarity=0.125 Sum_probs=28.4
Q ss_pred EEEEEeCCCceE--EeecCCHHHHHHHHHHHHHHHHH
Q psy9199 89 TTASIWSSGKIT--CTGATSEDQSKIAARRYARCLQR 123 (204)
Q Consensus 89 ~tvlIF~SGKiv--itGakS~e~a~~a~~k~~~~L~~ 123 (204)
.|+++|.+|+++ ..|..+.+++...+++++..-.+
T Consensus 80 Pt~~~~~~G~~~~~~~G~~~~~~l~~~l~~~l~~~~~ 116 (140)
T 3hz4_A 80 PTFKFFCHGRPVWEQVGQIYPSILKNAVRDMLQHGEE 116 (140)
T ss_dssp SEEEEEETTEEEEEEESSCCHHHHHHHHHHHHHHHHH
T ss_pred CEEEEEeCCcEEEEEcCCCCHHHHHHHHHHHhccccc
Confidence 378889999995 77999999999998888765443
No 38
>2b1k_A Thiol:disulfide interchange protein DSBE; C-terminal thioredoxin-like domain, N-terminal beta-sheet, fingerprint rigion, oxidoreductase; 1.90A {Escherichia coli} PDB: 3k8n_A 2g0f_A 1z5y_E 2b1l_A
Probab=50.03 E-value=22 Score=26.11 Aligned_cols=35 Identities=14% Similarity=0.025 Sum_probs=28.7
Q ss_pred EEEEEeCCCceE--EeecCCHHHHHHHHHHHHHHHHH
Q psy9199 89 TTASIWSSGKIT--CTGATSEDQSKIAARRYARCLQR 123 (204)
Q Consensus 89 ~tvlIF~SGKiv--itGakS~e~a~~a~~k~~~~L~~ 123 (204)
.+++|.++|+++ ..|..+.++....++++++.+++
T Consensus 128 ~~~lid~~G~i~~~~~g~~~~~~l~~~l~~~l~~~~~ 164 (168)
T 2b1k_A 128 ETFLIDGNGIIRYRHAGDLNPRVWEEEIKPLWEKYSK 164 (168)
T ss_dssp EEEEECTTSBEEEEEESCCCHHHHHHTTHHHHHHHHH
T ss_pred EEEEECCCCeEEEEEeCCCCHHHHHHHHHHHHHHHHH
Confidence 588999999997 56888999999888888776653
No 39
>2opv_A KHSRP protein; KH domain, RNA binding protein, KSRP; NMR {Homo sapiens}
Probab=50.01 E-value=22 Score=24.50 Aligned_cols=33 Identities=12% Similarity=0.110 Sum_probs=25.6
Q ss_pred cEEEEEeCCCc--------eEEeecCCHHHHHHHHHHHHHHHH
Q psy9199 88 YTTASIWSSGK--------ITCTGATSEDQSKIAARRYARCLQ 122 (204)
Q Consensus 88 ~~tvlIF~SGK--------ivitGakS~e~a~~a~~k~~~~L~ 122 (204)
.|.+.|-..|. +.++| +.+.+..|.+.+..+++
T Consensus 44 ga~I~i~~~~~~~~~~er~v~I~G--~~~~v~~A~~~I~~i~~ 84 (85)
T 2opv_A 44 GVKMILIQDGSQNTNVDKPLRIIG--DPYKVQQACEMVMDILR 84 (85)
T ss_dssp TCEEEECSSSCSSTTSCEEEEEEE--CHHHHHHHHHHHHHHHT
T ss_pred CCEEEEcCCCCCCCCCceEEEEEe--CHHHHHHHHHHHHHHhc
Confidence 35666777787 99999 88888888888777654
No 40
>3p2a_A Thioredoxin 2, putative thioredoxin-like protein; structural genomics, center for structural genomics of infec diseases, csgid; 2.19A {Yersinia pestis}
Probab=49.85 E-value=18 Score=26.28 Aligned_cols=31 Identities=16% Similarity=0.173 Sum_probs=25.0
Q ss_pred EEEEEeCCCceE--EeecCCHHHHHHHHHHHHH
Q psy9199 89 TTASIWSSGKIT--CTGATSEDQSKIAARRYAR 119 (204)
Q Consensus 89 ~tvlIF~SGKiv--itGakS~e~a~~a~~k~~~ 119 (204)
.++++|.+|+++ ..|..+.++....+++++.
T Consensus 111 Pt~~~~~~G~~~~~~~G~~~~~~l~~~l~~~l~ 143 (148)
T 3p2a_A 111 PTIMLYRNGKMIDMLNGAVPKAPFDNWLDEQLS 143 (148)
T ss_dssp SEEEEEETTEEEEEESSCCCHHHHHHHHHHHHH
T ss_pred CEEEEEECCeEEEEEeCCCCHHHHHHHHHHHhc
Confidence 478889999987 6788899988888776543
No 41
>2yzu_A Thioredoxin; redox protein, electron transport, structural genomics; 1.90A {Thermus thermophilus} PDB: 2cvk_A
Probab=49.73 E-value=10 Score=25.35 Aligned_cols=29 Identities=14% Similarity=0.248 Sum_probs=22.3
Q ss_pred EEEEEeCCCceE--EeecCCHHHHHHHHHHH
Q psy9199 89 TTASIWSSGKIT--CTGATSEDQSKIAARRY 117 (204)
Q Consensus 89 ~tvlIF~SGKiv--itGakS~e~a~~a~~k~ 117 (204)
.++.+|.+|+++ ..|..+.++....++++
T Consensus 74 Pt~~~~~~g~~~~~~~g~~~~~~l~~~l~~~ 104 (109)
T 2yzu_A 74 PTVILFKDGQPVEVLVGAQPKRNYQAKIEKH 104 (109)
T ss_dssp SEEEEEETTEEEEEEESCCCHHHHHHHHHTT
T ss_pred CEEEEEeCCcEeeeEeCCCCHHHHHHHHHHH
Confidence 477788999986 67888888877766644
No 42
>2ppt_A Thioredoxin-2; thiredoxin, zinc finger, oxidoreductase; 1.92A {Rhodobacter capsulatus}
Probab=47.52 E-value=22 Score=26.59 Aligned_cols=30 Identities=13% Similarity=0.120 Sum_probs=23.8
Q ss_pred EEEEEeCCCceE--EeecCCHHHHHHHHHHHH
Q psy9199 89 TTASIWSSGKIT--CTGATSEDQSKIAARRYA 118 (204)
Q Consensus 89 ~tvlIF~SGKiv--itGakS~e~a~~a~~k~~ 118 (204)
.|+.+|.+|+++ ..|..+.++....+++++
T Consensus 120 Pt~~~~~~G~~~~~~~G~~~~~~l~~~l~~~l 151 (155)
T 2ppt_A 120 PAFILFHKGRELARAAGARPASELVGFVRGKL 151 (155)
T ss_dssp SEEEEEETTEEEEEEESCCCHHHHHHHHHHHH
T ss_pred CEEEEEeCCeEEEEecCCCCHHHHHHHHHHHh
Confidence 477888999997 789988888777776543
No 43
>2voc_A Thioredoxin; electron transport, homodimer, disulfide, transport, redox-active center; 1.50A {Bacillus subtilis} PDB: 2ipa_A 2gzy_A 2gzz_A
Probab=47.00 E-value=17 Score=24.99 Aligned_cols=27 Identities=11% Similarity=0.220 Sum_probs=20.4
Q ss_pred EEEEEeCCCceE--EeecCCHHHHHHHHH
Q psy9199 89 TTASIWSSGKIT--CTGATSEDQSKIAAR 115 (204)
Q Consensus 89 ~tvlIF~SGKiv--itGakS~e~a~~a~~ 115 (204)
.++.+|++||++ ..|..+.++.+..++
T Consensus 73 Pt~~~~~~G~~~~~~~G~~~~~~l~~~l~ 101 (112)
T 2voc_A 73 PTLLVLKDGEVVETSVGFKPKEALQELVN 101 (112)
T ss_dssp SEEEEEETTEEEEEEESCCCHHHHHHHHH
T ss_pred cEEEEEeCCEEEEEEeCCCCHHHHHHHHH
Confidence 367777999987 789988887665544
No 44
>3zzx_A Thioredoxin; oxidoreductase; 1.88A {Litopenaeus vannamei}
Probab=46.89 E-value=20 Score=25.18 Aligned_cols=27 Identities=19% Similarity=0.155 Sum_probs=19.9
Q ss_pred EEEEEeCCCceE--EeecCCHHHHHHHHHH
Q psy9199 89 TTASIWSSGKIT--CTGATSEDQSKIAARR 116 (204)
Q Consensus 89 ~tvlIF~SGKiv--itGakS~e~a~~a~~k 116 (204)
.|+++|++|+.+ ..|+ +.+++++.+++
T Consensus 75 PT~~~~~~G~~v~~~~G~-~~~~l~~~i~k 103 (105)
T 3zzx_A 75 PTFLFMKNGQKLDSLSGA-NYDKLLELVEK 103 (105)
T ss_dssp SEEEEEETTEEEEEEESC-CHHHHHHHHHH
T ss_pred cEEEEEECCEEEEEEeCc-CHHHHHHHHHh
Confidence 388999999986 5786 77766655543
No 45
>1syr_A Thioredoxin; SGPP, structural genomics, PSI, protein structure initiative structural genomics of pathogenic protozoa consortium; 2.95A {Plasmodium falciparum} SCOP: c.47.1.1
Probab=46.50 E-value=11 Score=25.91 Aligned_cols=27 Identities=22% Similarity=0.391 Sum_probs=20.9
Q ss_pred EEEEeCCCceE--EeecCCHHHHHHHHHHH
Q psy9199 90 TASIWSSGKIT--CTGATSEDQSKIAARRY 117 (204)
Q Consensus 90 tvlIF~SGKiv--itGakS~e~a~~a~~k~ 117 (204)
++++|.+|+++ ..|. +.++.+..++++
T Consensus 82 t~~~~~~G~~~~~~~G~-~~~~l~~~l~~~ 110 (112)
T 1syr_A 82 TFKVYKNGSSVDTLLGA-NDSALKQLIEKY 110 (112)
T ss_dssp EEEEEETTEEEEEEESC-CHHHHHHHHHTT
T ss_pred EEEEEECCcEEEEEeCC-CHHHHHHHHHHh
Confidence 78899999985 6788 888877766543
No 46
>2j23_A Thioredoxin; immune protein, autoreactivity, cross-reactivity, IGE, fungi, epitope, allergen; 1.41A {Malassezia sympodialis}
Probab=45.66 E-value=20 Score=25.15 Aligned_cols=28 Identities=18% Similarity=0.247 Sum_probs=21.5
Q ss_pred EEEEEeCCCceE--EeecCCHHHHHHHHHHH
Q psy9199 89 TTASIWSSGKIT--CTGATSEDQSKIAARRY 117 (204)
Q Consensus 89 ~tvlIF~SGKiv--itGakS~e~a~~a~~k~ 117 (204)
.++.+|.+|+++ ..|. +.++++..++++
T Consensus 90 Pt~~~~~~G~~~~~~~G~-~~~~l~~~l~~~ 119 (121)
T 2j23_A 90 PTFVFFKNGQKIDTVVGA-DPSKLQAAITQH 119 (121)
T ss_dssp SEEEEEETTEEEEEEESS-CHHHHHHHHHHH
T ss_pred cEEEEEECCeEEeeEcCC-CHHHHHHHHHHh
Confidence 378889999986 5788 888877766654
No 47
>3d22_A TRXH4, thioredoxin H-type; electron transport, cytoplasm, redox-active center, transport, oxidoreductase; 1.60A {Populus trichocarpa x populusdeltoides} PDB: 3d21_A
Probab=45.63 E-value=26 Score=24.90 Aligned_cols=29 Identities=14% Similarity=0.083 Sum_probs=21.8
Q ss_pred EEEEeCCCceE--EeecCCHHHHHHHHHHHHH
Q psy9199 90 TASIWSSGKIT--CTGATSEDQSKIAARRYAR 119 (204)
Q Consensus 90 tvlIF~SGKiv--itGakS~e~a~~a~~k~~~ 119 (204)
++.+|.+|+++ ..|. +.++.+..+++++.
T Consensus 102 t~~~~~~G~~~~~~~G~-~~~~l~~~l~~~~~ 132 (139)
T 3d22_A 102 TFFFLRDGQQVDKLVGA-NKPELHKKITAILD 132 (139)
T ss_dssp EEEEEETTEEEEEEESC-CHHHHHHHHHHHHH
T ss_pred EEEEEcCCeEEEEEeCC-CHHHHHHHHHHHhc
Confidence 67788999987 5687 78877777765544
No 48
>1r26_A Thioredoxin; redox-active disulfide, electron transport; 1.40A {Trypanosoma} SCOP: c.47.1.1
Probab=44.68 E-value=29 Score=24.83 Aligned_cols=29 Identities=24% Similarity=0.209 Sum_probs=21.6
Q ss_pred EEEEEeCCCceE--EeecCCHHHHHHHHHHHH
Q psy9199 89 TTASIWSSGKIT--CTGATSEDQSKIAARRYA 118 (204)
Q Consensus 89 ~tvlIF~SGKiv--itGakS~e~a~~a~~k~~ 118 (204)
.|+++|.+|+++ ..| .+.++++..+++++
T Consensus 92 Pt~~i~~~G~~~~~~~G-~~~~~l~~~l~~~l 122 (125)
T 1r26_A 92 PTFIIARSGKMLGHVIG-ANPGMLRQKLRDII 122 (125)
T ss_dssp SEEEEEETTEEEEEEES-SCHHHHHHHHHHHH
T ss_pred cEEEEEeCCeEEEEEeC-CCHHHHHHHHHHHh
Confidence 368899999986 578 47777777776554
No 49
>2av4_A Thioredoxin-like protein 4A (DIM1); U5 snRNP-SPECIFIC 15KD prote structural genomics, structural genomics consortium, SGC, U function; 1.73A {Plasmodium yoelii}
Probab=44.64 E-value=24 Score=27.97 Aligned_cols=61 Identities=13% Similarity=0.084 Sum_probs=42.3
Q ss_pred hHHHHhcCCC-ce-e------eCCCceEEEEecCCcEEEEEeCCCceE-----------EeecCC-HHHHHHHHHHHHHH
Q psy9199 61 LRQIALNGVN-VE-Y------RRENGMVTMKLRKPYTTASIWSSGKIT-----------CTGATS-EDQSKIAARRYARC 120 (204)
Q Consensus 61 L~~la~~~~n-~e-Y------ePe~g~vi~Rl~~P~~tvlIF~SGKiv-----------itGakS-~e~a~~a~~k~~~~ 120 (204)
|++||....+ +. | +|+... .|.++.+ .|+++|.+|+.+ +.|+.+ .+++...++++++-
T Consensus 63 leelA~e~~~~v~f~kVDVDe~~e~a~-~y~V~si-PT~~fFk~G~~v~vd~Gtgd~~k~vGa~~~k~~l~~~ie~~~r~ 140 (160)
T 2av4_A 63 LYKVADDIKNFCVIYLVDITEVPDFNT-MYELYDP-VSVMFFYRNKHMMIDLGTGNNNKINWPMNNKQEFIDIVETIFRG 140 (160)
T ss_dssp HHHHHHHHTTTEEEEEEETTTCCTTTT-TTTCCSS-EEEEEEETTEEEEEECSSSCCSCBCSCCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCCcEEEEEECCCCHHHHH-HcCCCCC-CEEEEEECCEEEEEecCCCCcCeEEeecCCHHHHHHHHHHHHHH
Confidence 7888876543 32 2 244422 2444443 799999999997 779877 89999999888876
Q ss_pred HHH
Q psy9199 121 LQR 123 (204)
Q Consensus 121 L~~ 123 (204)
-++
T Consensus 141 a~~ 143 (160)
T 2av4_A 141 ARK 143 (160)
T ss_dssp HHT
T ss_pred hhc
Confidence 555
No 50
>3emx_A Thioredoxin; structural genomics, oxidoreductase, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.25A {Aeropyrum pernix}
Probab=44.30 E-value=27 Score=25.13 Aligned_cols=29 Identities=28% Similarity=0.276 Sum_probs=23.6
Q ss_pred EEEEeCCCceE--EeecCCHHHHHHHHHHHH
Q psy9199 90 TASIWSSGKIT--CTGATSEDQSKIAARRYA 118 (204)
Q Consensus 90 tvlIF~SGKiv--itGakS~e~a~~a~~k~~ 118 (204)
|+++|.+|+++ ..|..+.+..+..++++.
T Consensus 95 t~~~~~~G~~v~~~~G~~~~~~~~~~i~~~~ 125 (135)
T 3emx_A 95 TLVFYKEGRIVDKLVGATPWSLKVEKAREIY 125 (135)
T ss_dssp EEEEEETTEEEEEEESCCCHHHHHHHHHHHC
T ss_pred eEEEEcCCEEEEEEeCCCCHHHHHHHHHHHh
Confidence 88999999986 579989888887776554
No 51
>2qgv_A Hydrogenase-1 operon protein HYAE; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Shigella flexneri 2A} PDB: 2hfd_A
Probab=44.16 E-value=26 Score=26.92 Aligned_cols=30 Identities=10% Similarity=0.127 Sum_probs=24.9
Q ss_pred EEEEEeCCCceE--EeecCCHHHHHHHHHHHH
Q psy9199 89 TTASIWSSGKIT--CTGATSEDQSKIAARRYA 118 (204)
Q Consensus 89 ~tvlIF~SGKiv--itGakS~e~a~~a~~k~~ 118 (204)
-|+++|++|+.+ ..|+.+.++....+++++
T Consensus 93 PTlilFk~G~~v~~~~G~~~k~~l~~~i~~~l 124 (140)
T 2qgv_A 93 PATLVFTGGNYRGVLNGIHPWAELINLMRGLV 124 (140)
T ss_dssp SEEEEEETTEEEEEEESCCCHHHHHHHHHHHH
T ss_pred CEEEEEECCEEEEEEecCCCHHHHHHHHHHHh
Confidence 599999999996 569999998888777554
No 52
>2kuc_A Putative disulphide-isomerase; structural genomics, thioredo PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=43.91 E-value=37 Score=23.66 Aligned_cols=29 Identities=21% Similarity=0.147 Sum_probs=21.3
Q ss_pred EEEEEe-CCCceE--EeecCCHHHHHHHHHHH
Q psy9199 89 TTASIW-SSGKIT--CTGATSEDQSKIAARRY 117 (204)
Q Consensus 89 ~tvlIF-~SGKiv--itGakS~e~a~~a~~k~ 117 (204)
.++.+| ++|+++ ..|..+.++....++++
T Consensus 88 Pt~~~~d~~G~~~~~~~G~~~~~~l~~~l~~~ 119 (130)
T 2kuc_A 88 PTLLFINSSGEVVYRLVGAEDAPELLKKVKLG 119 (130)
T ss_dssp CEEEEECTTSCEEEEEESCCCHHHHHHHHHHH
T ss_pred CEEEEECCCCcEEEEecCCCCHHHHHHHHHHH
Confidence 467777 799997 56988888777666544
No 53
>1nsw_A Thioredoxin, TRX; thermostability, electron transport; 1.90A {Alicyclobacillus acidocaldarius} SCOP: c.47.1.1 PDB: 1rqm_A 1quw_A 1nw2_A
Probab=43.57 E-value=10 Score=25.45 Aligned_cols=28 Identities=14% Similarity=0.222 Sum_probs=21.4
Q ss_pred EEEEEeCCCceE--EeecCCHHHHHHHHHH
Q psy9199 89 TTASIWSSGKIT--CTGATSEDQSKIAARR 116 (204)
Q Consensus 89 ~tvlIF~SGKiv--itGakS~e~a~~a~~k 116 (204)
.++.+|++|+++ ..|..+.++.+..+++
T Consensus 73 Pt~~~~~~G~~~~~~~G~~~~~~l~~~l~~ 102 (105)
T 1nsw_A 73 PTLILFKGGRPVKQLIGYQPKEQLEAQLAD 102 (105)
T ss_dssp SEEEEEETTEEEEEEESCCCHHHHHHHTTT
T ss_pred cEEEEEeCCeEEEEEecCCCHHHHHHHHHH
Confidence 367778999986 6798888887766554
No 54
>2pu9_C TRX-F, thioredoxin F-type, chloroplast; protein-protein complex, iron-sulfur, electron transport; 1.65A {Spinacia oleracea} PDB: 2pvo_C 1f9m_A
Probab=43.50 E-value=37 Score=22.95 Aligned_cols=27 Identities=26% Similarity=0.199 Sum_probs=19.8
Q ss_pred EEEEeCCCceE--EeecCCHHHHHHHHHHH
Q psy9199 90 TASIWSSGKIT--CTGATSEDQSKIAARRY 117 (204)
Q Consensus 90 tvlIF~SGKiv--itGakS~e~a~~a~~k~ 117 (204)
|+++|.+|+++ ..|. +.+++...++++
T Consensus 81 t~~~~~~G~~~~~~~G~-~~~~l~~~l~~~ 109 (111)
T 2pu9_C 81 TFKILKENSVVGEVTGA-KYDKLLEAIQAA 109 (111)
T ss_dssp EEEEESSSSEEEEEESS-CHHHHHHHHHHH
T ss_pred EEEEEeCCcEEEEEcCC-CHHHHHHHHHHh
Confidence 68899999986 5787 477666666554
No 55
>1oaz_A Thioredoxin 1; immune system, antibody/complex, antibody, allergy, IGE, conformational diversity, multispecficity, redox-active center; 2.77A {Escherichia coli} SCOP: c.47.1.1
Probab=42.21 E-value=17 Score=26.02 Aligned_cols=28 Identities=25% Similarity=0.279 Sum_probs=21.6
Q ss_pred EEEEEeCCCceE--EeecCCHHHHHHHHHH
Q psy9199 89 TTASIWSSGKIT--CTGATSEDQSKIAARR 116 (204)
Q Consensus 89 ~tvlIF~SGKiv--itGakS~e~a~~a~~k 116 (204)
.++.+|++|+++ ..|..+.++.+..+++
T Consensus 91 Pt~~~~~~G~~~~~~~G~~~~~~l~~~l~~ 120 (123)
T 1oaz_A 91 PTLLLFKNGEVAATKVGALSKGQLKEFLDA 120 (123)
T ss_dssp SEEEEEESSSEEEEEESCCCHHHHHHHHTT
T ss_pred CEEEEEECCEEEEEEeCCCCHHHHHHHHHH
Confidence 367777999997 7899888887766653
No 56
>2o5a_A BH1328 protein; BHR21, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.70A {Bacillus halodurans} SCOP: d.218.1.12
Probab=41.72 E-value=34 Score=26.00 Aligned_cols=44 Identities=20% Similarity=0.322 Sum_probs=30.8
Q ss_pred eEEEEecCCcEEEEEeCCCceEEeecCCHHHHHHHHHHHHHHHHHcCCc
Q psy9199 79 MVTMKLRKPYTTASIWSSGKITCTGATSEDQSKIAARRYARCLQRLGFK 127 (204)
Q Consensus 79 ~vi~Rl~~P~~tvlIF~SGKivitGakS~e~a~~a~~k~~~~L~~lG~~ 127 (204)
.+++.+++-.. +..==|+||| .|..+++..++.+.+.+++.|.+
T Consensus 22 I~vlDv~~~s~----~~DyfVIatg-~S~rqv~Aiad~v~~~lk~~g~~ 65 (125)
T 2o5a_A 22 VVALNMKGISL----IADFFLICHG-NSEKQVQAIAHELKKVAQEQGIE 65 (125)
T ss_dssp EEEEECBTTBC------CEEEEEEE-SSHHHHHHHHHHHHHHHHHTTCC
T ss_pred eEEEEcCCCCc----ccCEEEEEEc-CCHHHHHHHHHHHHHHHHHcCCc
Confidence 34566654321 1122367777 59999999999999999999875
No 57
>2vlu_A Thioredoxin, thioredoxin H isoform 2.; oxidoreductase, thioredoxin-fold, protein disulfide reductase; 1.70A {Hordeum vulgare var} PDB: 2vlt_A 2vlv_A 2iwt_A*
Probab=41.22 E-value=32 Score=23.66 Aligned_cols=27 Identities=15% Similarity=0.177 Sum_probs=20.6
Q ss_pred EEEEeCCCceE--EeecCCHHHHHHHHHHH
Q psy9199 90 TASIWSSGKIT--CTGATSEDQSKIAARRY 117 (204)
Q Consensus 90 tvlIF~SGKiv--itGakS~e~a~~a~~k~ 117 (204)
++++|++|+++ ..|.. .++.+..++++
T Consensus 90 t~~~~~~G~~~~~~~G~~-~~~l~~~l~~~ 118 (122)
T 2vlu_A 90 TFLFMKEGDVKDRVVGAI-KEELTAKVGLH 118 (122)
T ss_dssp EEEEEETTEEEEEEESSC-HHHHHHHHHHH
T ss_pred EEEEEeCCEEEEEEeCcC-HHHHHHHHHHH
Confidence 78889999986 67887 77777666654
No 58
>2qsi_A Putative hydrogenase expression/formation protein; HUPG, MCS SAD, structural genomics, protein structure initiative; 1.80A {Rhodopseudomonas palustris}
Probab=40.98 E-value=36 Score=26.00 Aligned_cols=31 Identities=0% Similarity=-0.139 Sum_probs=26.4
Q ss_pred EEEEEeCCCceEE--eecCCHHHHHHHHHHHHH
Q psy9199 89 TTASIWSSGKITC--TGATSEDQSKIAARRYAR 119 (204)
Q Consensus 89 ~tvlIF~SGKivi--tGakS~e~a~~a~~k~~~ 119 (204)
.|+++|++|+.+- .|+.+.++....+++++.
T Consensus 91 PTlilFkdG~~v~~~vG~~~k~~l~~~l~~~l~ 123 (137)
T 2qsi_A 91 PSLAVVQPERTLGVIAKIQDWSSYLAQIGAMLA 123 (137)
T ss_dssp SEEEEEECCEEEEEEESCCCHHHHHHHHHHHHH
T ss_pred CEEEEEECCEEEEEEeCCCCHHHHHHHHHHHhc
Confidence 5999999999985 599999999888887663
No 59
>2l57_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, PSI protein structure initiative; NMR {Clostridium perfringens}
Probab=40.41 E-value=41 Score=23.37 Aligned_cols=29 Identities=10% Similarity=0.124 Sum_probs=21.5
Q ss_pred EEEEEeC-CCceE--EeecCCHHHHHHHHHHH
Q psy9199 89 TTASIWS-SGKIT--CTGATSEDQSKIAARRY 117 (204)
Q Consensus 89 ~tvlIF~-SGKiv--itGakS~e~a~~a~~k~ 117 (204)
.++.+|. +|+++ ..|..+.++.+..+++.
T Consensus 84 Pt~~~~~~~G~~~~~~~G~~~~~~l~~~l~~~ 115 (126)
T 2l57_A 84 PTTVFLDKEGNKFYVHQGLMRKNNIETILNSL 115 (126)
T ss_dssp SEEEEECTTCCEEEEEESCCCHHHHHHHHHHH
T ss_pred eEEEEECCCCCEEEEecCCCCHHHHHHHHHHH
Confidence 4777887 99996 66888888877666543
No 60
>4f9u_A CG32412; alpha/beta hydrolase, PGlu formation, PE, alzheimer'S diseas pyroglutamate, PGlu-amyloid, glycosylation, transferase, HY; HET: PBD NAG BMA MAN; 1.80A {Drosophila melanogaster} PDB: 4f9v_A*
Probab=39.79 E-value=40 Score=28.27 Aligned_cols=35 Identities=26% Similarity=0.457 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHcCCcccccee----------eEEEEEEEEe
Q psy9199 109 QSKIAARRYARCLQRLGFKARFTNF----------RVVNVLGTCS 143 (204)
Q Consensus 109 ~a~~a~~k~~~~L~~lG~~v~~~~f----------~v~NIvat~~ 143 (204)
.-+++.+-|.+.|+++|+++...+| +.+||+|+..
T Consensus 30 ~~~~~~~~i~~~l~~~g~~v~~~~f~~~~~~~~~~~~~Nii~~~~ 74 (312)
T 4f9u_A 30 GHQQVREYLVQSLNGLGFQTEVDEFKQRVPVFGELTFANVVGTIN 74 (312)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTEEEEEEEEEEEES
T ss_pred HHHHHHHHHHHHHHHCCCeEEEEeEEEecCCCCceeEEEEEEEEC
Confidence 3456788899999999998876654 4579999876
No 61
>2a4v_A Peroxiredoxin DOT5; yeast nuclear thiol peroxidase, atypical 2-Cys peroxiredoxin, oxidoreductase; 1.80A {Saccharomyces cerevisiae} SCOP: c.47.1.10
Probab=39.37 E-value=39 Score=24.67 Aligned_cols=35 Identities=11% Similarity=0.144 Sum_probs=26.3
Q ss_pred EEEEEeCCCceEEe--ecCCHHHHHHHHHHHHHHHHHc
Q psy9199 89 TTASIWSSGKITCT--GATSEDQSKIAARRYARCLQRL 124 (204)
Q Consensus 89 ~tvlIF~SGKivit--GakS~e~a~~a~~k~~~~L~~l 124 (204)
.+++| ++|+|+-. |.....+....++.+.+.|+.+
T Consensus 120 ~~~li-~~G~i~~~~~g~~~~~~~~~~~~~l~~~l~~l 156 (159)
T 2a4v_A 120 SHFIF-VDGKLKFKRVKISPEVSVNDAKKEVLEVAEKF 156 (159)
T ss_dssp EEEEE-ETTEEEEEEESCCHHHHHHHHHHHHHHHHHHT
T ss_pred eEEEE-cCCEEEEEEccCCccccHHHHHHHHHHHHHHh
Confidence 68889 99999864 5555667777777777777664
No 62
>2oe3_A Thioredoxin-3; electron transport, alpha/beta sandwich, oxidized, dimer; 1.80A {Saccharomyces cerevisiae} PDB: 2oe1_A 2oe0_A
Probab=39.23 E-value=20 Score=25.14 Aligned_cols=26 Identities=15% Similarity=0.201 Sum_probs=19.1
Q ss_pred EEEEEeCCCceE--EeecCCHHHHHHHHH
Q psy9199 89 TTASIWSSGKIT--CTGATSEDQSKIAAR 115 (204)
Q Consensus 89 ~tvlIF~SGKiv--itGakS~e~a~~a~~ 115 (204)
.++.+|.+|+++ ..|.. .++++..++
T Consensus 85 Pt~~~~~~G~~~~~~~G~~-~~~l~~~l~ 112 (114)
T 2oe3_A 85 PTFVLGKDGQLIGKIIGAN-PTALEKGIK 112 (114)
T ss_dssp SEEEEEETTEEEEEEESSC-HHHHHHHHH
T ss_pred cEEEEEeCCeEEEEEeCCC-HHHHHHHHH
Confidence 367789999997 78886 666665544
No 63
>2id1_A Hypothetical protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 3.00A {Chromobacterium violaceum} SCOP: d.218.1.12
Probab=38.77 E-value=41 Score=25.73 Aligned_cols=28 Identities=32% Similarity=0.330 Sum_probs=24.7
Q ss_pred eEEeecCCHHHHHHHHHHHHHHHHHcCCc
Q psy9199 99 ITCTGATSEDQSKIAARRYARCLQRLGFK 127 (204)
Q Consensus 99 ivitGakS~e~a~~a~~k~~~~L~~lG~~ 127 (204)
|+||| .|..+++..++.+.+.|++.|.+
T Consensus 38 VIaTg-~S~rqv~Aiad~v~~~lk~~g~~ 65 (130)
T 2id1_A 38 IVATG-DSNRQVKALANSVQVKLKEAGVD 65 (130)
T ss_dssp EEEEC-SSHHHHHHHHHHHHHHHHHTTCC
T ss_pred EEEEc-CCHHHHHHHHHHHHHHHHHcCCc
Confidence 67777 59999999999999999999875
No 64
>1faa_A Thioredoxin F; electron transport; 1.85A {Spinacia oleracea} SCOP: c.47.1.1
Probab=38.65 E-value=35 Score=23.64 Aligned_cols=27 Identities=26% Similarity=0.199 Sum_probs=19.8
Q ss_pred EEEEeCCCceE--EeecCCHHHHHHHHHHH
Q psy9199 90 TASIWSSGKIT--CTGATSEDQSKIAARRY 117 (204)
Q Consensus 90 tvlIF~SGKiv--itGakS~e~a~~a~~k~ 117 (204)
|+++|++|+++ ..|.. .++....++++
T Consensus 94 t~~~~~~G~~~~~~~G~~-~~~l~~~i~~~ 122 (124)
T 1faa_A 94 TFKILKENSVVGEVTGAK-YDKLLEAIQAA 122 (124)
T ss_dssp EEEEEETTEEEEEEESSC-HHHHHHHHHHH
T ss_pred EEEEEeCCcEEEEEcCCC-HHHHHHHHHHh
Confidence 68899999997 57874 66666665543
No 65
>2fwh_A Thiol:disulfide interchange protein DSBD; thioredoxin-like, C-terminal domain, reduced form at PH7, oxidoreductase; 0.99A {Escherichia coli} SCOP: c.47.1.1 PDB: 2fwe_A 2fwf_A 2fwg_A 1vrs_D 1uc7_A
Probab=37.39 E-value=19 Score=25.89 Aligned_cols=29 Identities=17% Similarity=0.192 Sum_probs=23.0
Q ss_pred EEEEEe-CCCceE----EeecCCHHHHHHHHHHH
Q psy9199 89 TTASIW-SSGKIT----CTGATSEDQSKIAARRY 117 (204)
Q Consensus 89 ~tvlIF-~SGKiv----itGakS~e~a~~a~~k~ 117 (204)
.++.+| .+|+++ ..|..+.++....++++
T Consensus 93 Pt~~~~d~~G~~v~~~~~~G~~~~~~l~~~l~~~ 126 (134)
T 2fwh_A 93 PTILFFDGQGQEHPQARVTGFMDAETFSAHLRDR 126 (134)
T ss_dssp SEEEEECTTSCBCGGGCBCSCCCHHHHHHHHHHC
T ss_pred CEEEEECCCCCEeeeeeeeeccCHHHHHHHHHhc
Confidence 367778 999996 88999998887776654
No 66
>2vim_A Thioredoxin, TRX; thioredoxin fold, oxidoreductase; 1.38A {Fasciola hepatica}
Probab=37.09 E-value=43 Score=21.99 Aligned_cols=27 Identities=26% Similarity=0.271 Sum_probs=19.7
Q ss_pred EEEEeCCCceE--EeecCCHHHHHHHHHHH
Q psy9199 90 TASIWSSGKIT--CTGATSEDQSKIAARRY 117 (204)
Q Consensus 90 tvlIF~SGKiv--itGakS~e~a~~a~~k~ 117 (204)
++.+|.+|+++ ..|. +.++.+..++++
T Consensus 75 t~~~~~~g~~~~~~~G~-~~~~l~~~l~~~ 103 (104)
T 2vim_A 75 TFVFIKDGKEVDRFSGA-NETKLRETITRH 103 (104)
T ss_dssp EEEEEETTEEEEEEESS-CHHHHHHHHHHH
T ss_pred EEEEEeCCcEEEEEeCC-CHHHHHHHHHhh
Confidence 68889999986 5674 777776666543
No 67
>3nec_A Profilin, inflammatory profilin; actin-binding, actin-binding protein; HET: MSE; 1.70A {Toxoplasma gondii}
Probab=36.14 E-value=62 Score=25.56 Aligned_cols=45 Identities=16% Similarity=0.219 Sum_probs=33.6
Q ss_pred EEecCCcEEEEEeCCCc-eEEeecCCHH------HHHHHHHHHHHHHHHcCC
Q psy9199 82 MKLRKPYTTASIWSSGK-ITCTGATSED------QSKIAARRYARCLQRLGF 126 (204)
Q Consensus 82 ~Rl~~P~~tvlIF~SGK-ivitGakS~e------~a~~a~~k~~~~L~~lG~ 126 (204)
+|-+.++.-+.|..+++ .++.|.-++. .+..++.+|++-|++.||
T Consensus 115 i~~kK~~~Gv~i~KT~~~aiVI~~y~e~~~~~~g~~~~~ve~ladYL~~~GY 166 (166)
T 3nec_A 115 TMCARSKGGAHLIKTPNGSIVIALYDEEKEQDKGNSRTSALAFAEYLHQSGY 166 (166)
T ss_dssp EEEEETTEEEEEEECTTSEEEEEEEEGGGTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred EEeccCCceEEEEEeCCCEEEEEEccCCCccCHHHHHHHHHHHHHHHHHcCC
Confidence 45455566677888888 5555554544 999999999999999886
No 68
>1xfl_A Thioredoxin H1; AT3G51030, structural genomics, protein structure initiative, CESG, center for eukaryotic structural genomics; NMR {Arabidopsis thaliana} SCOP: c.47.1.1
Probab=35.92 E-value=40 Score=23.80 Aligned_cols=28 Identities=25% Similarity=0.311 Sum_probs=20.6
Q ss_pred EEEEEeCCCceE--EeecCCHHHHHHHHHHH
Q psy9199 89 TTASIWSSGKIT--CTGATSEDQSKIAARRY 117 (204)
Q Consensus 89 ~tvlIF~SGKiv--itGakS~e~a~~a~~k~ 117 (204)
.|+++|.+|+++ ..|. +.++.+..++++
T Consensus 93 Pt~~~~~~G~~~~~~~G~-~~~~l~~~l~~~ 122 (124)
T 1xfl_A 93 PTFMFLKEGKILDKVVGA-KKDELQSTIAKH 122 (124)
T ss_dssp SEEEEEETTEEEEEEESC-CHHHHHHHHHHH
T ss_pred CEEEEEECCEEEEEEeCC-CHHHHHHHHHHh
Confidence 378889999986 5685 777777666654
No 69
>2xc2_A Thioredoxinn; oxidoreductase, protein disulfide reductase; 1.56A {Schistosoma mansoni} PDB: 2xbq_A 2xbi_A
Probab=35.46 E-value=45 Score=22.85 Aligned_cols=28 Identities=18% Similarity=0.213 Sum_probs=19.9
Q ss_pred EEEEEeCCCceE--EeecCCHHHHHHHHHHH
Q psy9199 89 TTASIWSSGKIT--CTGATSEDQSKIAARRY 117 (204)
Q Consensus 89 ~tvlIF~SGKiv--itGakS~e~a~~a~~k~ 117 (204)
.++++|.+|+++ ..|. +.++.+..++++
T Consensus 87 Pt~~~~~~G~~~~~~~G~-~~~~l~~~l~~~ 116 (117)
T 2xc2_A 87 PTFIAIKNGEKVGDVVGA-SIAKVEDMIKKF 116 (117)
T ss_dssp SEEEEEETTEEEEEEESS-CHHHHHHHHHHH
T ss_pred ceEEEEeCCcEEEEEeCC-CHHHHHHHHHHh
Confidence 378889999986 5684 777766666543
No 70
>1x5d_A Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC7, thioredoxin like domain, redox, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=35.25 E-value=45 Score=23.14 Aligned_cols=31 Identities=16% Similarity=0.186 Sum_probs=23.8
Q ss_pred EEEEEeCCCceE--EeecCCHHHHHHHHHHHHH
Q psy9199 89 TTASIWSSGKIT--CTGATSEDQSKIAARRYAR 119 (204)
Q Consensus 89 ~tvlIF~SGKiv--itGakS~e~a~~a~~k~~~ 119 (204)
.++.+|..|+.+ ..|..+.++....+++++.
T Consensus 85 Pt~~~~~~g~~~~~~~G~~~~~~l~~~l~~~~~ 117 (133)
T 1x5d_A 85 PTIKIFQKGESPVDYDGGRTRSDIVSRALDLFS 117 (133)
T ss_dssp SEEEEEETTEEEEEECSCCSHHHHHHHHHHHHH
T ss_pred CeEEEEeCCCceEEecCCCCHHHHHHHHHHHhh
Confidence 478888889976 6688888888877776554
No 71
>1zzo_A RV1677; thioredoxin fold, structural genomics, PSI, protein structure initiative, TB structural genomics consortium, TBSGC; 1.60A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 3ios_A
Probab=35.17 E-value=44 Score=22.84 Aligned_cols=29 Identities=14% Similarity=0.220 Sum_probs=21.6
Q ss_pred EEEEe-CCCceE-EeecCCHHHHHHHHHHHH
Q psy9199 90 TASIW-SSGKIT-CTGATSEDQSKIAARRYA 118 (204)
Q Consensus 90 tvlIF-~SGKiv-itGakS~e~a~~a~~k~~ 118 (204)
++.++ .+|+++ ..|..+.++....+++++
T Consensus 104 ~~~~id~~g~i~~~~g~~~~~~l~~~l~~~l 134 (136)
T 1zzo_A 104 AYAFVDPHGNVDVVRGRMSQDELTRRVTALT 134 (136)
T ss_dssp EEEEECTTCCEEEEESCCCHHHHHHHHHHHC
T ss_pred eEEEECCCCCEEEEecCCCHHHHHHHHHHHh
Confidence 44555 799996 788888888877777654
No 72
>3uvt_A Thioredoxin domain-containing protein 5; thioredoxin-like fold, isomerase; 2.00A {Homo sapiens} PDB: 2diz_A 3uj1_A
Probab=34.98 E-value=39 Score=22.52 Aligned_cols=28 Identities=18% Similarity=0.177 Sum_probs=21.8
Q ss_pred EEEEEeCCCce--EEeecCCHHHHHHHHHH
Q psy9199 89 TTASIWSSGKI--TCTGATSEDQSKIAARR 116 (204)
Q Consensus 89 ~tvlIF~SGKi--vitGakS~e~a~~a~~k 116 (204)
.++++|.+|++ ...|..+.++....+++
T Consensus 80 Pt~~~~~~g~~~~~~~g~~~~~~l~~~l~~ 109 (111)
T 3uvt_A 80 PTLLLFRGGKKVSEHSGGRDLDSLHRFVLS 109 (111)
T ss_dssp SEEEEEETTEEEEEECSCCSHHHHHHHHHH
T ss_pred cEEEEEeCCcEEEeccCCcCHHHHHHHHHh
Confidence 47889999998 46788888888776654
No 73
>2l6c_A Thioredoxin; oxidoreductase; NMR {Desulfovibrio vulgaris} PDB: 2l6d_A
Probab=34.65 E-value=38 Score=23.18 Aligned_cols=28 Identities=14% Similarity=0.186 Sum_probs=21.1
Q ss_pred EEEEEeCCCceE--EeecCCHHHHHHHHHH
Q psy9199 89 TTASIWSSGKIT--CTGATSEDQSKIAARR 116 (204)
Q Consensus 89 ~tvlIF~SGKiv--itGakS~e~a~~a~~k 116 (204)
.++.+|.+|+++ ..|..+.++++..+++
T Consensus 74 Pt~~~~~~G~~v~~~~G~~~~~~l~~~~~~ 103 (110)
T 2l6c_A 74 PTLVFIRDGKVAKVFSGIMNPRELQALYAS 103 (110)
T ss_dssp CEEEEEESSSEEEEEESCCCHHHHHHHHHT
T ss_pred CEEEEEECCEEEEEEcCCCCHHHHHHHHHH
Confidence 477888999985 4688888887766553
No 74
>1lu4_A Soluble secreted antigen MPT53; thioredoxin-like fold, structural genomics, PSI, protein structure initiative; 1.12A {Mycobacterium tuberculosis} SCOP: c.47.1.10
Probab=34.44 E-value=38 Score=23.34 Aligned_cols=29 Identities=17% Similarity=0.196 Sum_probs=20.8
Q ss_pred EEEEe-CCCceE-Ee---ecCCHHHHHHHHHHHH
Q psy9199 90 TASIW-SSGKIT-CT---GATSEDQSKIAARRYA 118 (204)
Q Consensus 90 tvlIF-~SGKiv-it---GakS~e~a~~a~~k~~ 118 (204)
++.++ .+|+++ .. |..+.++....+++++
T Consensus 102 ~~~lid~~G~i~~~~~~~g~~~~~~l~~~l~~ll 135 (136)
T 1lu4_A 102 AFVFYRADGTSTFVNNPTAAMSQDELSGRVAALT 135 (136)
T ss_dssp EEEEECTTSCEEEECCSSSCCCHHHHHHHHHHC-
T ss_pred EEEEECCCCcEEEEEcCCCccCHHHHHHHHHHHh
Confidence 44455 899997 66 8888888877777643
No 75
>3kh7_A Thiol:disulfide interchange protein DSBE; TRX-like, thiol-disulfide exchange, cell inner membrane, CYT C-type biogenesis, disulfide bond; 1.75A {Pseudomonas aeruginosa} PDB: 3kh9_A
Probab=34.39 E-value=60 Score=24.33 Aligned_cols=35 Identities=17% Similarity=0.050 Sum_probs=28.7
Q ss_pred EEEEEeCCCceEEe--ecCCHHHHHHHHHHHHHHHHH
Q psy9199 89 TTASIWSSGKITCT--GATSEDQSKIAARRYARCLQR 123 (204)
Q Consensus 89 ~tvlIF~SGKivit--GakS~e~a~~a~~k~~~~L~~ 123 (204)
.+++|..+|+|+-. |..+.++....++++++.++.
T Consensus 135 ~~~lid~~G~i~~~~~g~~~~~~l~~~l~~~l~~l~~ 171 (176)
T 3kh7_A 135 ETYLIDKQGIIRHKIVGVVDQKVWREQLAPLYQQLLD 171 (176)
T ss_dssp EEEEECTTCBEEEEEESCCCHHHHHHHTHHHHHHHHC
T ss_pred eEEEECCCCeEEEEEcCCCCHHHHHHHHHHHHHHHhh
Confidence 58888899999754 888999999988888876653
No 76
>3d6i_A Monothiol glutaredoxin-3; thioredoxin-like, electron transport, redox- active center, transport, oxidoreductase; HET: CME; 1.50A {Saccharomyces cerevisiae}
Probab=34.32 E-value=56 Score=21.99 Aligned_cols=30 Identities=17% Similarity=0.097 Sum_probs=20.3
Q ss_pred EEEEEeCCCceE--EeecCCHHHHHHHHHHHHH
Q psy9199 89 TTASIWSSGKIT--CTGATSEDQSKIAARRYAR 119 (204)
Q Consensus 89 ~tvlIF~SGKiv--itGakS~e~a~~a~~k~~~ 119 (204)
.++.+|.+|+++ ..|. +.++.+..++++..
T Consensus 78 Pt~~~~~~G~~~~~~~G~-~~~~l~~~l~~~~~ 109 (112)
T 3d6i_A 78 PYFIIIHKGTILKELSGA-DPKEYVSLLEDCKN 109 (112)
T ss_dssp SEEEEEETTEEEEEECSC-CHHHHHHHHHHHHH
T ss_pred cEEEEEECCEEEEEecCC-CHHHHHHHHHHHHh
Confidence 467888999986 4576 55556666665543
No 77
>1ti3_A Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Populus tremula} SCOP: c.47.1.1
Probab=33.55 E-value=46 Score=22.29 Aligned_cols=28 Identities=25% Similarity=0.284 Sum_probs=21.5
Q ss_pred EEEEeCCCceE--EeecCCHHHHHHHHHHHH
Q psy9199 90 TASIWSSGKIT--CTGATSEDQSKIAARRYA 118 (204)
Q Consensus 90 tvlIF~SGKiv--itGakS~e~a~~a~~k~~ 118 (204)
++.+|.+|+++ ..|. +.++....+++++
T Consensus 82 t~~~~~~G~~~~~~~g~-~~~~l~~~l~~~~ 111 (113)
T 1ti3_A 82 TFIFLKDGKLVDKTVGA-DKDGLPTLVAKHA 111 (113)
T ss_dssp EEEEEETTEEEEEEECC-CTTHHHHHHHHHH
T ss_pred EEEEEeCCEEEEEEecC-CHHHHHHHHHHhh
Confidence 77888999985 5674 7888887777664
No 78
>3die_A Thioredoxin, TRX; electron transport, SWAP domain, redox enzymology, oxidoreductase, redox-active center, transport; 1.85A {Staphylococcus aureus} SCOP: c.47.1.1 PDB: 2o7k_A 2o85_A 2o89_A 2o87_A
Probab=33.39 E-value=26 Score=23.19 Aligned_cols=28 Identities=11% Similarity=0.214 Sum_probs=21.8
Q ss_pred EEEEEeCCCceE--EeecCCHHHHHHHHHH
Q psy9199 89 TTASIWSSGKIT--CTGATSEDQSKIAARR 116 (204)
Q Consensus 89 ~tvlIF~SGKiv--itGakS~e~a~~a~~k 116 (204)
.++.+|.+|+++ ..|..+.++.+..+++
T Consensus 75 Pt~~~~~~G~~~~~~~g~~~~~~l~~~l~~ 104 (106)
T 3die_A 75 PTLIVFKDGQPVDKVVGFQPKENLAEVLDK 104 (106)
T ss_dssp SEEEEEETTEEEEEEESCCCHHHHHHHHHT
T ss_pred CEEEEEeCCeEEEEEeCCCCHHHHHHHHHH
Confidence 478888999986 5688888888776654
No 79
>1zma_A Bacterocin transport accessory protein; alpha-beta-alpha-sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.25A {Streptococcus pneumoniae} SCOP: c.47.1.1
Probab=33.02 E-value=19 Score=25.01 Aligned_cols=26 Identities=23% Similarity=0.273 Sum_probs=19.5
Q ss_pred EEEEEeCCCceE--EeecCCHHHHHHHH
Q psy9199 89 TTASIWSSGKIT--CTGATSEDQSKIAA 114 (204)
Q Consensus 89 ~tvlIF~SGKiv--itGakS~e~a~~a~ 114 (204)
.|+++|.+|+++ ..|..+.++++..+
T Consensus 89 Pt~~~~~~G~~~~~~~G~~~~~~l~~~l 116 (118)
T 1zma_A 89 PGFVHITDGQINVRCDSSMSAQEIKDFA 116 (118)
T ss_dssp CEEEEEETTEEEEECCTTCCHHHHHHHH
T ss_pred CeEEEEECCEEEEEecCCCCHHHHHHHh
Confidence 477888999986 56888887766554
No 80
>2l5l_A Thioredoxin; structural genomics, electron transport, PSI-2, protein STRU initiative; NMR {Bacteroides vulgatus}
Probab=33.00 E-value=61 Score=23.02 Aligned_cols=30 Identities=20% Similarity=0.203 Sum_probs=22.7
Q ss_pred EEEEEe-CCCceE-EeecCCHHHHHHHHHHHH
Q psy9199 89 TTASIW-SSGKIT-CTGATSEDQSKIAARRYA 118 (204)
Q Consensus 89 ~tvlIF-~SGKiv-itGakS~e~a~~a~~k~~ 118 (204)
.++.+| .+|+++ ..|..+.++++..+++..
T Consensus 94 Pt~~~~~~~G~~~~~~G~~~~~~l~~~l~~~~ 125 (136)
T 2l5l_A 94 PSILFIPMEGKPEMAQGAMPKASFKKAIDEFL 125 (136)
T ss_dssp CEEEEECSSSCCEEEESCCCHHHHHHHHHHHH
T ss_pred CEEEEECCCCcEEEEeCCCCHHHHHHHHHHHh
Confidence 477788 899975 578888888877776554
No 81
>2i1u_A Thioredoxin, TRX, MPT46; redox protein, electron transport; 1.30A {Mycobacterium tuberculosis} PDB: 3nof_A 3o6t_A* 2l4q_A 2l59_A
Probab=32.51 E-value=22 Score=24.43 Aligned_cols=28 Identities=14% Similarity=0.156 Sum_probs=20.9
Q ss_pred EEEEEeCCCceE--EeecCCHHHHHHHHHH
Q psy9199 89 TTASIWSSGKIT--CTGATSEDQSKIAARR 116 (204)
Q Consensus 89 ~tvlIF~SGKiv--itGakS~e~a~~a~~k 116 (204)
.++.+|.+|+++ ..|..+.++.+..+++
T Consensus 86 Pt~~~~~~g~~~~~~~G~~~~~~l~~~l~~ 115 (121)
T 2i1u_A 86 PTLILFKDGQPVKRIVGAKGKAALLRELSD 115 (121)
T ss_dssp SEEEEEETTEEEEEEESCCCHHHHHHHTCS
T ss_pred CEEEEEECCEEEEEecCCCCHHHHHHHHHH
Confidence 378889999986 5688888776665543
No 82
>2ggt_A SCO1 protein homolog, mitochondrial; copper chaperone, Cu-binding protein, mitochondrial assembly factor, redox, nickel, disuplhide, mitochondrion; 2.40A {Homo sapiens} SCOP: c.47.1.10 PDB: 2gqk_A 2gql_A 2gqm_A 2gt5_A 2gt6_A 2gvp_A 2hrf_A 2hrn_A 1wp0_A
Probab=32.02 E-value=73 Score=22.82 Aligned_cols=31 Identities=10% Similarity=-0.014 Sum_probs=23.8
Q ss_pred EEEEEeCCCceEE--eecCCHHHHHHHHHHHHH
Q psy9199 89 TTASIWSSGKITC--TGATSEDQSKIAARRYAR 119 (204)
Q Consensus 89 ~tvlIF~SGKivi--tGakS~e~a~~a~~k~~~ 119 (204)
.+++|.++|+++- .|..+.+++...++++++
T Consensus 129 ~~~lid~~G~i~~~~~g~~~~~~l~~~l~~ll~ 161 (164)
T 2ggt_A 129 IMYLIGPDGEFLDYFGQNKRKGEIAASIATHMR 161 (164)
T ss_dssp EEEEECTTSCEEEEEETTCCHHHHHHHHHHHHG
T ss_pred eEEEECCCCeEEEEeCCCCCHHHHHHHHHHHHH
Confidence 7889999999985 466788887777776543
No 83
>2in3_A Hypothetical protein; DSBA family, FRNE-like subfamily, disulfide isomerase, struc genomics, PSI-2, protein structure initiative; 1.85A {Nitrosomonas europaea}
Probab=31.76 E-value=47 Score=25.59 Aligned_cols=31 Identities=10% Similarity=0.034 Sum_probs=25.4
Q ss_pred EEEEEeCCCce--EEeecCCHHHHHHHHHHHHH
Q psy9199 89 TTASIWSSGKI--TCTGATSEDQSKIAARRYAR 119 (204)
Q Consensus 89 ~tvlIF~SGKi--vitGakS~e~a~~a~~k~~~ 119 (204)
.++.|+.+||. .+.|+.+.++...+++++..
T Consensus 178 Pt~~i~~~G~~~~~~~G~~~~~~l~~~l~~~~~ 210 (216)
T 2in3_A 178 PALVVESGTDRYLITTGYRPIEALRQLLDTWLQ 210 (216)
T ss_dssp SEEEEEETTEEEEEESSCCCHHHHHHHHHHHHH
T ss_pred ceEEEEECCEEEEeccCCCCHHHHHHHHHHHHH
Confidence 46777889998 78999999999988886654
No 84
>3f3q_A Thioredoxin-1; His TAG, electron transport, cytoplasm, deoxyribonucleotide synthesis, golgi apparatus, membrane, nucleus; 1.76A {Saccharomyces cerevisiae} PDB: 3f3r_A* 2i9h_A 2fa4_A 2hsy_A 3pin_A 4dss_B
Probab=31.41 E-value=43 Score=22.88 Aligned_cols=28 Identities=25% Similarity=0.260 Sum_probs=20.8
Q ss_pred EEEEEeCCCceEE--eecCCHHHHHHHHHHH
Q psy9199 89 TTASIWSSGKITC--TGATSEDQSKIAARRY 117 (204)
Q Consensus 89 ~tvlIF~SGKivi--tGakS~e~a~~a~~k~ 117 (204)
.++.+|.+|+++- .|. +.++++..++++
T Consensus 79 Pt~~~~~~G~~~~~~~G~-~~~~l~~~i~~~ 108 (109)
T 3f3q_A 79 PTLLLFKNGKEVAKVVGA-NPAAIKQAIAAN 108 (109)
T ss_dssp SEEEEEETTEEEEEEESS-CHHHHHHHHHHH
T ss_pred CEEEEEECCEEEEEEeCC-CHHHHHHHHHhh
Confidence 4788889999865 587 677777776654
No 85
>3kij_A Probable glutathione peroxidase 8; human PDI-peroxidase, membrane, oxidoreductase, transmembrane; 1.80A {Homo sapiens} SCOP: c.47.1.0 PDB: 3cyn_A
Probab=31.38 E-value=48 Score=24.85 Aligned_cols=33 Identities=6% Similarity=-0.022 Sum_probs=26.2
Q ss_pred EEEEeCCCceEEe--ecCCHHHHHHHHHHHHHHHH
Q psy9199 90 TASIWSSGKITCT--GATSEDQSKIAARRYARCLQ 122 (204)
Q Consensus 90 tvlIF~SGKivit--GakS~e~a~~a~~k~~~~L~ 122 (204)
+++|.+.|+|+-. |..+.+++...++++++.+.
T Consensus 139 ~~lid~~G~i~~~~~g~~~~~~l~~~i~~lL~~~~ 173 (180)
T 3kij_A 139 KYLVNPEGQVVKFWRPEEPIEVIRPDIAALVRQVI 173 (180)
T ss_dssp EEEECTTSCEEEEECTTCCGGGTHHHHHHHHHHHH
T ss_pred EEEECCCCCEEEEECCCCCHHHHHHHHHHHHHHHh
Confidence 8999999999754 77788888888877766543
No 86
>1x4m_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1
Probab=31.23 E-value=34 Score=24.00 Aligned_cols=35 Identities=14% Similarity=0.192 Sum_probs=25.0
Q ss_pred EEEEEeCCCc--------eEEeecCCHHHHHHHHHHHHHHHHHcC
Q psy9199 89 TTASIWSSGK--------ITCTGATSEDQSKIAARRYARCLQRLG 125 (204)
Q Consensus 89 ~tvlIF~SGK--------ivitGakS~e~a~~a~~k~~~~L~~lG 125 (204)
|.+.|-..|. +.++| +.+.+..|.+.+..++++.+
T Consensus 46 a~I~I~~~~~~~~~~~r~v~I~G--~~~~v~~A~~~I~~~i~~~~ 88 (94)
T 1x4m_A 46 VKMVMIQDGPQNTGADKPLRITG--DPYKVQQAKEMVLELIRDQG 88 (94)
T ss_dssp SEEEECCSCCCSSCSCEEEEEEE--CTTTHHHHHHHHHHHHCCCS
T ss_pred CeEEecCCCCCCCCCceEEEEEe--CHHHHHHHHHHHHHHHhccC
Confidence 3444555554 88898 77888888888888876643
No 87
>2rli_A SCO2 protein homolog, mitochondrial; copper protein, thioredoxin fold, metal transport, structural genomics, spine2-complexes; NMR {Homo sapiens}
Probab=31.15 E-value=59 Score=23.60 Aligned_cols=32 Identities=19% Similarity=0.097 Sum_probs=25.3
Q ss_pred EEEEEeCCCceEE--eecCCHHHHHHHHHHHHHH
Q psy9199 89 TTASIWSSGKITC--TGATSEDQSKIAARRYARC 120 (204)
Q Consensus 89 ~tvlIF~SGKivi--tGakS~e~a~~a~~k~~~~ 120 (204)
.+++|.++|+++- .|..+.+++...++++++.
T Consensus 132 ~~~lid~~G~i~~~~~g~~~~~~l~~~l~~ll~~ 165 (171)
T 2rli_A 132 AIYLLNPDGLFTDYYGRSRSAEQISDSVRRHMAA 165 (171)
T ss_dssp EEEEECTTSCEEEEEESSCCHHHHHHHHHHHHHH
T ss_pred eEEEECCCCeEEEEECCCCCHHHHHHHHHHHHHH
Confidence 6889999999985 4777888888888776653
No 88
>1nho_A Probable thioredoxin; beta sheet, alpha helix, oxidoreductase; NMR {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.47.1.1
Probab=30.67 E-value=59 Score=20.47 Aligned_cols=22 Identities=23% Similarity=0.226 Sum_probs=18.5
Q ss_pred CCceEEeecCCHHHHHHHHHHH
Q psy9199 96 SGKITCTGATSEDQSKIAARRY 117 (204)
Q Consensus 96 SGKivitGakS~e~a~~a~~k~ 117 (204)
+|++...|..+.++.+..+++.
T Consensus 62 ~G~~~~~G~~~~~~l~~~l~~~ 83 (85)
T 1nho_A 62 NGVVRFVGAPSREELFEAINDE 83 (85)
T ss_dssp TTTEEEECSSCCHHHHHHHHHH
T ss_pred CCEEEEccCCCHHHHHHHHHHH
Confidence 9999889998999888877654
No 89
>3lwa_A Secreted thiol-disulfide isomerase; thioredoxin, PSI, MCSG, structural genomics, midwest center for structural genomics; 1.75A {Corynebacterium glutamicum}
Probab=30.65 E-value=68 Score=23.82 Aligned_cols=31 Identities=10% Similarity=-0.076 Sum_probs=24.9
Q ss_pred EEEEEeCCCceE--EeecCCHHHHHHHHHHHHH
Q psy9199 89 TTASIWSSGKIT--CTGATSEDQSKIAARRYAR 119 (204)
Q Consensus 89 ~tvlIF~SGKiv--itGakS~e~a~~a~~k~~~ 119 (204)
.+++|..+|+++ ..|..+.+++...++++++
T Consensus 149 ~~~lid~~G~i~~~~~g~~~~~~l~~~l~~ll~ 181 (183)
T 3lwa_A 149 TTIVLDKQHRPAAVFLREVTSKDVLDVALPLVD 181 (183)
T ss_dssp EEEEECTTSCEEEEECSCCCHHHHHHHHHHHHH
T ss_pred eEEEECCCCcEEEEEcCCCCHHHHHHHHHHHHh
Confidence 588999999997 4677788888888887653
No 90
>2vm1_A Thioredoxin, thioredoxin H isoform 1.; oxidoreductase, protein disulfide reductase, thioredoxin-FOL; 1.7A {Hordeum vulgare var} PDB: 2vm2_A
Probab=30.52 E-value=65 Score=21.66 Aligned_cols=29 Identities=14% Similarity=0.130 Sum_probs=21.0
Q ss_pred EEEEEeCCCceE--EeecCCHHHHHHHHHHHH
Q psy9199 89 TTASIWSSGKIT--CTGATSEDQSKIAARRYA 118 (204)
Q Consensus 89 ~tvlIF~SGKiv--itGakS~e~a~~a~~k~~ 118 (204)
.++.+|++|+++ ..|. +.++....++++.
T Consensus 83 Pt~~~~~~g~~~~~~~g~-~~~~l~~~l~~~~ 113 (118)
T 2vm1_A 83 PTFLFIKDGEKVDSVVGG-RKDDIHTKIVALM 113 (118)
T ss_dssp SEEEEEETTEEEEEEESC-CHHHHHHHHHHHH
T ss_pred cEEEEEeCCeEEEEecCC-CHHHHHHHHHHHh
Confidence 377888999986 5674 7777777666554
No 91
>3nul_A Profilin I; cytoskeleton, actin binding protein; HET: MSE; 1.60A {Arabidopsis thaliana} SCOP: d.110.1.1 PDB: 1a0k_A 1cqa_A 1g5u_A
Probab=30.51 E-value=1e+02 Score=22.95 Aligned_cols=37 Identities=14% Similarity=0.150 Sum_probs=27.0
Q ss_pred EEEEeCCCceEEeecC----CHHHHHHHHHHHHHHHHHcCC
Q psy9199 90 TASIWSSGKITCTGAT----SEDQSKIAARRYARCLQRLGF 126 (204)
Q Consensus 90 tvlIF~SGKivitGak----S~e~a~~a~~k~~~~L~~lG~ 126 (204)
-+.|.++++.++.|-- ...++..++.++++.|++.||
T Consensus 90 Gv~i~kT~~aivig~y~e~~~~g~~~~~ve~ladYL~~~GY 130 (130)
T 3nul_A 90 GVTIKKTNQALVFGFYDEPMTGGQCNLVVERLGDYLIESEL 130 (130)
T ss_dssp EEEEEECSSEEEEEEECTTSCHHHHHHHHHHHHHHHHHTTC
T ss_pred eEEEEECCCEEEEEEcCCCCCHHHHHHHHHHHHHHHHHcCC
Confidence 3455556665555443 456899999999999999886
No 92
>4fuu_A Leucine aminopeptidase; phosphorylase/hydrolase like fold, peptidase family M28, STR genomics, joint center for structural genomics; 1.30A {Bacteroides thetaiotaomicron}
Probab=30.27 E-value=71 Score=26.82 Aligned_cols=35 Identities=17% Similarity=0.221 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHcCCcccccee----------eEEEEEEEEe
Q psy9199 109 QSKIAARRYARCLQRLGFKARFTNF----------RVVNVLGTCS 143 (204)
Q Consensus 109 ~a~~a~~k~~~~L~~lG~~v~~~~f----------~v~NIvat~~ 143 (204)
.-+.+.+-|...|+++|+++....| +.+||+|+..
T Consensus 46 ~~~~a~~~i~~~l~~~g~~v~~q~~~~~~~~~~~~~~~Nii~~~~ 90 (309)
T 4fuu_A 46 EHVACGNYLAGKLEAFGAKVTNQYADLIAYDGTLLKARNIIGSYK 90 (309)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEEEEEEEECTTSCEEEEEEEEEEES
T ss_pred HHHHHHHHHHHHHHHcCCeeEEEeEEeccCCCCcceeEEEEEEEC
Confidence 4456788999999999998776544 5689999875
No 93
>2yj7_A LPBCA thioredoxin; oxidoreductase; 1.65A {Synthetic construct}
Probab=35.98 E-value=11 Score=24.94 Aligned_cols=28 Identities=18% Similarity=0.345 Sum_probs=20.2
Q ss_pred EEEEEeCCCceE--EeecCCHHHHHHHHHH
Q psy9199 89 TTASIWSSGKIT--CTGATSEDQSKIAARR 116 (204)
Q Consensus 89 ~tvlIF~SGKiv--itGakS~e~a~~a~~k 116 (204)
.++.+|++|+++ ..|..+.++....+++
T Consensus 75 Pt~~~~~~g~~~~~~~g~~~~~~l~~~l~~ 104 (106)
T 2yj7_A 75 PTLLLFKNGQVVDRLVGAQPKEALKERIDK 104 (106)
Confidence 367778999987 5687777777666554
No 94
>4fai_A CG5976, isoform B; alpha/beta hydrolase, PGlu formation, PE, alzheimer'S diseas pyroglutamate, PGlu-amyloid, transferase, hydrolase; HET: PBD; 1.65A {Drosophila melanogaster} PDB: 4fbe_A*
Probab=29.73 E-value=61 Score=27.70 Aligned_cols=35 Identities=17% Similarity=0.353 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHcCCcccccee----------eEEEEEEEEe
Q psy9199 109 QSKIAARRYARCLQRLGFKARFTNF----------RVVNVLGTCS 143 (204)
Q Consensus 109 ~a~~a~~k~~~~L~~lG~~v~~~~f----------~v~NIvat~~ 143 (204)
.-+.+.+-|.+.|+++|+++...+| +.+||+|+.+
T Consensus 57 ~~~~~~~~i~~~l~~~g~~v~~q~f~~~~~~~~~~~~~Nii~~~~ 101 (330)
T 4fai_A 57 NHSIVREYIVQSLRDLDWDVEVNSFHDHAPIKGKLHFHNIIATLN 101 (330)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTEEEEEEEEEEESC
T ss_pred HHHHHHHHHHHHHHHCCCEEEEeeeeeecCCCCceeEEEEEEEEC
Confidence 3456888999999999998877655 3579999875
No 95
>1gh2_A Thioredoxin-like protein; redox-active center, electron transport; 2.22A {Homo sapiens} SCOP: c.47.1.1
Probab=29.65 E-value=48 Score=22.18 Aligned_cols=27 Identities=11% Similarity=0.058 Sum_probs=17.7
Q ss_pred EEEEEeCCCceE--EeecCCHHHHHHHHHH
Q psy9199 89 TTASIWSSGKIT--CTGATSEDQSKIAARR 116 (204)
Q Consensus 89 ~tvlIF~SGKiv--itGakS~e~a~~a~~k 116 (204)
.|+.+|.+|+.+ ..|. +.++++..+++
T Consensus 76 Pt~~~~~~G~~~~~~~G~-~~~~l~~~l~~ 104 (107)
T 1gh2_A 76 PTFQFFRNKVRIDQYQGA-DAVGLEEKIKQ 104 (107)
T ss_dssp SEEEEEETTEEEEEEESS-CHHHHHHHHHH
T ss_pred cEEEEEECCeEEEEEeCC-CHHHHHHHHHH
Confidence 378889999986 5675 44445554443
No 96
>1acf_A Profilin I; protein binding, actin-binding protein, contractIle protein; 2.00A {Acanthamoeba castellanii} SCOP: d.110.1.1 PDB: 1prq_A 2prf_A 1f2k_A 2acg_A
Probab=29.50 E-value=98 Score=22.83 Aligned_cols=42 Identities=17% Similarity=0.166 Sum_probs=31.0
Q ss_pred cCCcEEEEEeCCCceEEeecC----CHHHHHHHHHHHHHHHHHcCC
Q psy9199 85 RKPYTTASIWSSGKITCTGAT----SEDQSKIAARRYARCLQRLGF 126 (204)
Q Consensus 85 ~~P~~tvlIF~SGKivitGak----S~e~a~~a~~k~~~~L~~lG~ 126 (204)
+..+.-+.|.++++.++.|-- ...++..++.++++.|.+.|+
T Consensus 80 kk~~~Gv~i~kT~~aivI~~y~~~~~~g~~~~~ve~ladyL~~~gy 125 (125)
T 1acf_A 80 KKGSSGVITVKTSKAILVGVYNEKIQPGTAANVVEKLADYLIGQGF 125 (125)
T ss_dssp EETTEEEEEEECSSEEEEEEECTTSCHHHHHHHHHHHHHHHHTTTC
T ss_pred ecCCCeEEEEECCCEEEEEEcCCCCCHHHHHHHHHHHHHHHHHcCC
Confidence 334445667777777766654 356999999999999999885
No 97
>2ctm_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=29.05 E-value=68 Score=22.63 Aligned_cols=35 Identities=17% Similarity=0.108 Sum_probs=25.9
Q ss_pred cEEEEEeCCC-----ceEEeecCCHHHHHHHHHHHHHHHHHc
Q psy9199 88 YTTASIWSSG-----KITCTGATSEDQSKIAARRYARCLQRL 124 (204)
Q Consensus 88 ~~tvlIF~SG-----KivitGakS~e~a~~a~~k~~~~L~~l 124 (204)
.+.+.|...| .+.++|. .+.+..|.+.+..++++.
T Consensus 47 g~~I~i~~~g~~~~~~V~I~G~--~e~v~~A~~~I~~i~~e~ 86 (95)
T 2ctm_A 47 KVDIRFPQSGAPDPNCVTVTGL--PENVEEAIDHILNLEEEY 86 (95)
T ss_dssp TCEEECCCTTCSCTTEEEEESC--HHHHHHHHHHHHHHHHHH
T ss_pred CCeEEecCCCCCCCcEEEEEcC--HHHHHHHHHHHHHHHHHH
Confidence 3556666667 7999996 578888888888877664
No 98
>3i96_A Ethanolamine utilization protein EUTS; structural protein; HET: NHE; 1.65A {Escherichia coli} PDB: 3ia0_A
Probab=28.88 E-value=74 Score=24.04 Aligned_cols=30 Identities=27% Similarity=0.316 Sum_probs=26.3
Q ss_pred CCceEEeecCCHHHHHHHHHHHHHHHHH-cCCc
Q psy9199 96 SGKITCTGATSEDQSKIAARRYARCLQR-LGFK 127 (204)
Q Consensus 96 SGKivitGakS~e~a~~a~~k~~~~L~~-lG~~ 127 (204)
+|-++++| +..+++.|++...+.+++ +||.
T Consensus 74 ~G~vii~G--dVsaV~aAvea~~~~~~~~l~f~ 104 (119)
T 3i96_A 74 SGALVIYG--SVGAVEEALSQTVSGLGRLLNYT 104 (119)
T ss_dssp TCEEEEEE--CHHHHHHHHHHHHHHHHHHHCCB
T ss_pred ccEEEEEE--CHHHHHHHHHHHHHHHhhccCeE
Confidence 57888999 999999999999999976 6775
No 99
>3ups_A Iojap-like protein; PSI-biology, MCSG, midwest center for structural genomics, U function, structural genomics; HET: MSE; 1.75A {Zymomonas mobilis subsp}
Probab=28.33 E-value=52 Score=25.33 Aligned_cols=44 Identities=16% Similarity=0.128 Sum_probs=30.8
Q ss_pred eEEEEecCCcEEEEEeCCCceEEeecCCHHHHHHHHHHHHHHHHHcCCc
Q psy9199 79 MVTMKLRKPYTTASIWSSGKITCTGATSEDQSKIAARRYARCLQRLGFK 127 (204)
Q Consensus 79 ~vi~Rl~~P~~tvlIF~SGKivitGakS~e~a~~a~~k~~~~L~~lG~~ 127 (204)
.+++.+++-.. +..==|+||| .|.-+++..++.+.+.|++.|..
T Consensus 38 I~vlDv~~~s~----~~DyfVIatg-~S~rqv~Aiad~v~~~lk~~g~~ 81 (136)
T 3ups_A 38 IATIPLAGKSS----IADYMVIASG-RSSRQVTAMAQKLADRIKAATGY 81 (136)
T ss_dssp EEEEECTTTCS----SCSEEEEEEC-SSHHHHHHHHHHHHHHHHHHHCC
T ss_pred eEEEECCCCCc----ccCEEEEEEc-CCHHHHHHHHHHHHHHHHHcCCc
Confidence 44566664321 2222367777 59999999999999999988764
No 100
>1xwb_A Thioredoxin; dimerization, redox regulation, THI X-RAY electron transport; 2.20A {Drosophila melanogaster} SCOP: c.47.1.1 PDB: 1xw9_A 1xwc_A 1xwa_A
Probab=28.28 E-value=58 Score=21.39 Aligned_cols=26 Identities=12% Similarity=0.129 Sum_probs=18.3
Q ss_pred EEEEeCCCceE--EeecCCHHHHHHHHHH
Q psy9199 90 TASIWSSGKIT--CTGATSEDQSKIAARR 116 (204)
Q Consensus 90 tvlIF~SGKiv--itGakS~e~a~~a~~k 116 (204)
++.+|.+|+++ ..| .+.++.+..+++
T Consensus 77 t~~~~~~G~~~~~~~g-~~~~~l~~~i~~ 104 (106)
T 1xwb_A 77 TFVFLKNGVKVEEFAG-ANAKRLEDVIKA 104 (106)
T ss_dssp EEEEEETTEEEEEEES-CCHHHHHHHHHH
T ss_pred EEEEEcCCcEEEEEcC-CCHHHHHHHHHH
Confidence 68889999985 467 477666655543
No 101
>3dml_A Putative uncharacterized protein; thioredoxin, oxidoreductase, sulfur oxidation, thiol- disulfide oxidoreductase; HET: MSE; 1.90A {Paracoccus denitrificans} PDB: 3d4t_A*
Probab=28.13 E-value=90 Score=22.92 Aligned_cols=38 Identities=13% Similarity=-0.050 Sum_probs=29.0
Q ss_pred EEecCCcEEEEEeCCCceE--EeecCCHHHHHHHHHHHHHH
Q psy9199 82 MKLRKPYTTASIWSSGKIT--CTGATSEDQSKIAARRYARC 120 (204)
Q Consensus 82 ~Rl~~P~~tvlIF~SGKiv--itGakS~e~a~~a~~k~~~~ 120 (204)
++++.+ .|+++|.+||.+ ++|+.+.++....+++++..
T Consensus 72 ~~V~g~-PT~i~f~~G~ev~Ri~G~~~~~~f~~~L~~~l~~ 111 (116)
T 3dml_A 72 RPVTFT-PTFVLMAGDVESGRLEGYPGEDFFWPMLARLIGQ 111 (116)
T ss_dssp SCCCSS-SEEEEEETTEEEEEEECCCCHHHHHHHHHHHHHH
T ss_pred CCCCCC-CEEEEEECCEEEeeecCCCCHHHHHHHHHHHHhh
Confidence 444432 589999999986 68999999988888876543
No 102
>1ypr_A Profilin; actin-binding protein, cytoskeleton; 2.30A {Saccharomyces cerevisiae} SCOP: d.110.1.1 PDB: 1k0k_A
Probab=28.09 E-value=1.2e+02 Score=22.37 Aligned_cols=44 Identities=7% Similarity=-0.011 Sum_probs=32.4
Q ss_pred EecCCcEEEEEeCCCceEEeecC----CHHHHHHHHHHHHHHHHHcCC
Q psy9199 83 KLRKPYTTASIWSSGKITCTGAT----SEDQSKIAARRYARCLQRLGF 126 (204)
Q Consensus 83 Rl~~P~~tvlIF~SGKivitGak----S~e~a~~a~~k~~~~L~~lG~ 126 (204)
|-+..+.-+.|.++++.++.|-- ...++..++.++++.|++.|+
T Consensus 78 ~~kk~~~Gi~i~kT~~aivI~~y~e~~~~g~~~~~ve~ladYL~~~gy 125 (125)
T 1ypr_A 78 YGRHDAEGVVCVRTKQTVIIAHYPPTVQAGEATKIVEQLADYLIGVQY 125 (125)
T ss_dssp EEEETTEEEEEEECSSEEEEEEECTTSCHHHHHHHHHHHHHHHHHTTC
T ss_pred EEecCCceEEEEECCCEEEEEEcCCCCCHHHHHHHHHHHHHHHHHcCC
Confidence 33344455667777777777654 456999999999999999886
No 103
>3h93_A Thiol:disulfide interchange protein DSBA; disulfide bond, redox-active center, transcription regulator; HET: MSE GOL; 1.50A {Pseudomonas aeruginosa PAO1} SCOP: c.47.1.0
Probab=27.60 E-value=86 Score=23.67 Aligned_cols=28 Identities=14% Similarity=0.077 Sum_probs=24.3
Q ss_pred CCceEEe--ecCCHHHHHHHHHHHHHHHHH
Q psy9199 96 SGKITCT--GATSEDQSKIAARRYARCLQR 123 (204)
Q Consensus 96 SGKivit--GakS~e~a~~a~~k~~~~L~~ 123 (204)
+||..+. |+.+.++....++.++...++
T Consensus 159 ng~~~~~~~G~~~~e~l~~~i~~l~~k~~~ 188 (192)
T 3h93_A 159 NGKYRFDIGSAGGPEETLKLADYLIEKERA 188 (192)
T ss_dssp TTTEEEEHHHHTSHHHHHHHHHHHHHHHHH
T ss_pred CCEEEecccccCCHHHHHHHHHHHHHHHHh
Confidence 9999988 999999999999988876544
No 104
>1zzk_A Heterogeneous nuclear ribonucleoprotein K; KH domian, alpha-beta fold, DNA binding protein; 0.95A {Homo sapiens} SCOP: d.51.1.1 PDB: 1zzj_A 1zzi_A
Probab=27.32 E-value=77 Score=21.40 Aligned_cols=26 Identities=27% Similarity=0.285 Sum_probs=22.2
Q ss_pred CceEEeecCCHHHHHHHHHHHHHHHHHc
Q psy9199 97 GKITCTGATSEDQSKIAARRYARCLQRL 124 (204)
Q Consensus 97 GKivitGakS~e~a~~a~~k~~~~L~~l 124 (204)
+.+.++| +.+.+..|.+.+..++++.
T Consensus 52 ~~v~I~G--~~~~v~~A~~~I~~~i~~~ 77 (82)
T 1zzk_A 52 RIITITG--TQDQIQNAQYLLQNSVKQY 77 (82)
T ss_dssp EEEEEEE--CHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEe--CHHHHHHHHHHHHHHHHhc
Confidence 5788999 5899999999999888875
No 105
>2vqe_K 30S ribosomal protein S11, 30S ribosomal protein S6; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: c.55.4.1 PDB: 1gix_N* 1hnw_K* 1hnx_K* 1hnz_K* 1hr0_K 1ibk_K* 1ibl_K* 1ibm_K 1j5e_K 1jgo_N* 1jgp_N* 1jgq_N* 1ml5_N* 1n32_K* 1n33_K* 1n34_K 1n36_K 1xmo_K* 1xmq_K* 1xnq_K* ...
Probab=27.05 E-value=57 Score=24.86 Aligned_cols=47 Identities=21% Similarity=0.361 Sum_probs=33.2
Q ss_pred EEEecCCcEEEEEe-CCCceEEeecC--CHHHHHHHHHHHHHHHHHcCCc
Q psy9199 81 TMKLRKPYTTASIW-SSGKITCTGAT--SEDQSKIAARRYARCLQRLGFK 127 (204)
Q Consensus 81 i~Rl~~P~~tvlIF-~SGKivitGak--S~e~a~~a~~k~~~~L~~lG~~ 127 (204)
++-+.++.-.++.| ++|.+-.-|++ +...|..|++.+++.++++|++
T Consensus 29 ivtiTd~~G~~~~~~SaG~~gfKg~rk~tp~AA~~aa~~~~~~~~~~Gi~ 78 (129)
T 2vqe_K 29 IVTITDPDGNPITWSSGGVIGYKGSRKGTPYAAQLAALDAAKKAMAYGMQ 78 (129)
T ss_dssp EEEEECTTSCEEEECCTTTTTCCSGGGGSHHHHHHHHHHHHHHHHTTTCC
T ss_pred EEEEEcCCCCEEEEEeccceeEcCCCcCCHHHHHHHHHHHHHHHHHhCCe
Confidence 35555665444444 44777666665 7788899999999999999974
No 106
>3tc8_A Leucine aminopeptidase; phosphorylase/hydrolase-like, structural genomics, joint CEN structural genomics, JCSG; 1.06A {Parabacteroides distasonis}
Probab=26.98 E-value=96 Score=26.30 Aligned_cols=37 Identities=22% Similarity=0.298 Sum_probs=29.1
Q ss_pred CHHHHHHHHHHHHHHHHHcCCcccccee----------eEEEEEEEEe
Q psy9199 106 SEDQSKIAARRYARCLQRLGFKARFTNF----------RVVNVLGTCS 143 (204)
Q Consensus 106 S~e~a~~a~~k~~~~L~~lG~~v~~~~f----------~v~NIvat~~ 143 (204)
|..+ +.+.+.+.+.|+++|+++....| ...||+|...
T Consensus 44 s~~~-~~~~~~l~~~l~~~G~~v~~~~~~~~~~~g~~~~~~Nvia~~~ 90 (309)
T 3tc8_A 44 TAAH-KACGDYLASELKRFGAKVYQQEAILTAYDGTKLEARNIIGSFD 90 (309)
T ss_dssp SHHH-HHHHHHHHHHHHHTTCEEEEEEEEEECTTSCEEEEEEEEEEES
T ss_pred CHHH-HHHHHHHHHHHHHCCCeEEEEEeeccccCCCcccceEEEEEEC
Confidence 4444 77888999999999998877655 3689999875
No 107
>2axy_A Poly(RC)-binding protein 2; protein-DNA complex, DNA binding protein-DNA complex; 1.70A {Homo sapiens} SCOP: d.51.1.1 PDB: 2pqu_A 2py9_A 1ztg_A 3vke_A*
Probab=26.39 E-value=1e+02 Score=20.32 Aligned_cols=33 Identities=18% Similarity=0.069 Sum_probs=23.7
Q ss_pred EEEEEeCCC----ceEEeecCCHHHHHHHHHHHHHHHHH
Q psy9199 89 TTASIWSSG----KITCTGATSEDQSKIAARRYARCLQR 123 (204)
Q Consensus 89 ~tvlIF~SG----KivitGakS~e~a~~a~~k~~~~L~~ 123 (204)
|.+.|...| .+.++|. .+.+..|...+...|++
T Consensus 36 a~I~i~~~~~~er~v~I~G~--~~~v~~A~~~I~~~l~e 72 (73)
T 2axy_A 36 ARINISEGNCPERIITLAGP--TNAIFKAFAMIIDKLEE 72 (73)
T ss_dssp CEEEECSSCCSEEEEEEEEC--HHHHHHHHHHHHHHHHC
T ss_pred CEEEEecCCCCcEEEEEEeC--HHHHHHHHHHHHHHHhc
Confidence 344444445 4788885 88999999988888764
No 108
>3it4_B Arginine biosynthesis bifunctional protein ARGJ beta chain; ornithine acetyltransferase, structural genomics; 1.70A {Mycobacterium tuberculosis} PDB: 3it6_B
Probab=26.20 E-value=52 Score=27.20 Aligned_cols=21 Identities=52% Similarity=0.760 Sum_probs=19.0
Q ss_pred eEEeecCCHHHHHHHHHHHHH
Q psy9199 99 ITCTGATSEDQSKIAARRYAR 119 (204)
Q Consensus 99 ivitGakS~e~a~~a~~k~~~ 119 (204)
|.++||+|+++|+.+++.++.
T Consensus 89 v~V~gA~s~~~A~~iA~~Ia~ 109 (205)
T 3it4_B 89 VTVTGAATEDDALVAARQIAR 109 (205)
T ss_dssp EEEEEESSHHHHHHHHHHHHH
T ss_pred EEEeCCCCHHHHHHHHHHHhc
Confidence 578999999999999998885
No 109
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=26.14 E-value=66 Score=25.89 Aligned_cols=29 Identities=14% Similarity=0.259 Sum_probs=23.2
Q ss_pred EEEEEeCCCceE--EeecCCHHHHHHHHHHH
Q psy9199 89 TTASIWSSGKIT--CTGATSEDQSKIAARRY 117 (204)
Q Consensus 89 ~tvlIF~SGKiv--itGakS~e~a~~a~~k~ 117 (204)
.|+++|.+|+++ .+|..+.+.+...++..
T Consensus 82 Pt~~~~~~G~~~~~~~g~~~~~~l~~~l~~~ 112 (287)
T 3qou_A 82 PTVYLFQNGQPVDGFQGPQPEEAIRALLDXV 112 (287)
T ss_dssp SEEEEEETTEEEEEEESCCCHHHHHHHHHHH
T ss_pred CeEEEEECCEEEEEeeCCCCHHHHHHHHHHH
Confidence 388899999998 78998988877666543
No 110
>1fo5_A Thioredoxin; disulfide oxidoreductase, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; NMR {Methanocaldococcus jannaschii} SCOP: c.47.1.1
Probab=25.96 E-value=51 Score=20.82 Aligned_cols=22 Identities=18% Similarity=0.344 Sum_probs=18.3
Q ss_pred CCceEEeecCCHHHHHHHHHHH
Q psy9199 96 SGKITCTGATSEDQSKIAARRY 117 (204)
Q Consensus 96 SGKivitGakS~e~a~~a~~k~ 117 (204)
+|++...|..+.++.+..+++.
T Consensus 63 ~G~~~~~G~~~~~~l~~~l~~~ 84 (85)
T 1fo5_A 63 NGDVEFIGAPTKEALVEAIKKR 84 (85)
T ss_dssp TTEEECCSSSSSHHHHHHHHHH
T ss_pred CCEEeeecCCCHHHHHHHHHHh
Confidence 9998889988999888877653
No 111
>2dj1_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=25.84 E-value=70 Score=22.44 Aligned_cols=29 Identities=17% Similarity=0.308 Sum_probs=20.5
Q ss_pred EEEEEeCCCceE-EeecCCHHHHHHHHHHH
Q psy9199 89 TTASIWSSGKIT-CTGATSEDQSKIAARRY 117 (204)
Q Consensus 89 ~tvlIF~SGKiv-itGakS~e~a~~a~~k~ 117 (204)
.++.+|.+|++. ..|..+.+++...++++
T Consensus 93 Pt~~~~~~G~~~~~~g~~~~~~l~~~l~~~ 122 (140)
T 2dj1_A 93 PTIKILKKGQAVDYDGSRTQEEIVAKVREV 122 (140)
T ss_dssp SEEEEEETTEEEECCSCCCHHHHHHHHHHH
T ss_pred CeEEEEECCcEEEcCCCCCHHHHHHHHHHh
Confidence 477888999843 36878888777666544
No 112
>1m72_A Caspase-1; caspase, cysteine protease, hydrolase-hydrolase inhibitor CO; 2.30A {Spodoptera frugiperda} SCOP: c.17.1.1 PDB: 3sip_B
Probab=25.27 E-value=29 Score=29.33 Aligned_cols=49 Identities=18% Similarity=0.312 Sum_probs=33.8
Q ss_pred EEEec-CCcEEEEEeCCCceEEeecCCHHHHHHHHHHHHHHHHHcCCccc
Q psy9199 81 TMKLR-KPYTTASIWSSGKITCTGATSEDQSKIAARRYARCLQRLGFKAR 129 (204)
Q Consensus 81 i~Rl~-~P~~tvlIF~SGKivitGakS~e~a~~a~~k~~~~L~~lG~~v~ 129 (204)
.|++. .|+..+||+.+.+.--.+.+....+..=++.+.+.|+++||+|.
T Consensus 24 ~Y~m~~~~rg~aLIInn~~f~~~~l~~R~g~~~Da~~L~~~f~~LGF~V~ 73 (272)
T 1m72_A 24 YYNMNHKHRGMAIIFNHEHFDIHSLKSRTGTNVDSDNLSKVLKTLGFKVT 73 (272)
T ss_dssp BCCCCSSEEEEEEEEECCCCSSTTCCCCTTHHHHHHHHHHHHHHTTCEEE
T ss_pred cccCCCCCCCEEEEEechhcCCCCcccCCCCHHHHHHHHHHHHHCCCEEE
Confidence 36765 45678999999877532334455555666778888899998764
No 113
>2dko_A Caspase-3; low barrier hydrogen bond, caspase, drug design, radiation D tetrahedral intermediate, protease; 1.06A {Homo sapiens} PDB: 1nme_A 2h5i_A 2h5j_A 2h65_A 2xyg_A* 2xyh_A 2xyp_A* 2xzd_A 2xzt_A 2y0b_A 3edq_A 1gfw_A 1re1_A* 1pau_A* 1rhk_A* 1rhm_A* 1rhq_A* 1rhr_A* 1rhu_A* 1rhj_A* ...
Probab=25.06 E-value=33 Score=26.36 Aligned_cols=49 Identities=16% Similarity=0.240 Sum_probs=33.8
Q ss_pred EEec-CCcEEEEEeCCCceEEe-ecCCHHHHHHHHHHHHHHHHHcCCcccc
Q psy9199 82 MKLR-KPYTTASIWSSGKITCT-GATSEDQSKIAARRYARCLQRLGFKARF 130 (204)
Q Consensus 82 ~Rl~-~P~~tvlIF~SGKivit-GakS~e~a~~a~~k~~~~L~~lG~~v~~ 130 (204)
|++. .|+..++|+.+.+.--. +-+....+..=++.+.+.++++||+|..
T Consensus 9 Y~m~~~~rG~alIinn~~F~~~~~l~~R~Gt~~D~~~L~~~f~~LgF~V~~ 59 (146)
T 2dko_A 9 YKMDYPEMGLCIIINNKNFHKSTGMTSRSGTDVDAANLRETFRNLKYEVRN 59 (146)
T ss_dssp CCCCSSEEEEEEEEECCCCCGGGTCCCCTTHHHHHHHHHHHHHHTTCEEEE
T ss_pred ccCCCCCceEEEEEeccccCCCCCcccCCCCHHHHHHHHHHHHHCCCEEEE
Confidence 5554 45788899988876421 3344455666667888999999998654
No 114
>3sir_A Caspase; hydrolase; 2.68A {Drosophila melanogaster} PDB: 3sip_A
Probab=24.87 E-value=30 Score=28.94 Aligned_cols=49 Identities=18% Similarity=0.316 Sum_probs=27.8
Q ss_pred EEec-CCcEEEEEeCCCceEEeecCCHHHHHHHHHHHHHHHHHcCCcccc
Q psy9199 82 MKLR-KPYTTASIWSSGKITCTGATSEDQSKIAARRYARCLQRLGFKARF 130 (204)
Q Consensus 82 ~Rl~-~P~~tvlIF~SGKivitGakS~e~a~~a~~k~~~~L~~lG~~v~~ 130 (204)
|++. .|+-.+||+.+.+.--.+-+....+..=++.+.+.|+++||+|..
T Consensus 13 Y~m~~~~rg~aLIInn~~f~~~~l~~R~G~~~D~~~L~~~f~~LGF~V~~ 62 (259)
T 3sir_A 13 YNMRHKNRGMALIFNHEHFEVPTLKSRAGTNVDCENLTRVLKQLDFEVTV 62 (259)
T ss_dssp CCCCSSEEEEEEEEEECCC-----------CCHHHHHHHHHHHTTCEEEE
T ss_pred CCCCCCCccEEEEEeccccCCCCCCCCCCcHHHHHHHHHHHHHCCCEEEE
Confidence 5665 356788999998886443333333334456788888999997643
No 115
>2vup_A Glutathione peroxidase-like protein; oxidoreductase, trypanothione, dithiol-dependant peroxidase; 2.10A {Trypanosoma brucei}
Probab=24.69 E-value=92 Score=23.51 Aligned_cols=31 Identities=13% Similarity=-0.098 Sum_probs=23.9
Q ss_pred EEEEEeCCCceEEe--ecCCHHHHHHHHHHHHH
Q psy9199 89 TTASIWSSGKITCT--GATSEDQSKIAARRYAR 119 (204)
Q Consensus 89 ~tvlIF~SGKivit--GakS~e~a~~a~~k~~~ 119 (204)
.+++|.++|+++-. |..+.+++...++++++
T Consensus 153 ~~~lid~~G~i~~~~~g~~~~~~l~~~i~~ll~ 185 (190)
T 2vup_A 153 TSFLIDRDGVPVERFSPGASVKDIEKKLIPLLE 185 (190)
T ss_dssp CEEEECTTSCEEEEECTTCCHHHHHHHHHHHHH
T ss_pred eEEEECCCCcEEEEECCCCCHHHHHHHHHHHHh
Confidence 68999999999865 76788877777766543
No 116
>3eyt_A Uncharacterized protein SPOA0173; thioredoxin-like superfamily protein SPOA0173, silicibacter DSS, structural genomics, PSI-2; 1.95A {Silicibacter pomeroyi}
Probab=24.52 E-value=92 Score=22.16 Aligned_cols=30 Identities=17% Similarity=0.054 Sum_probs=23.2
Q ss_pred EEEEEeCCCceEE--eecCCHHHHHHHHHHHH
Q psy9199 89 TTASIWSSGKITC--TGATSEDQSKIAARRYA 118 (204)
Q Consensus 89 ~tvlIF~SGKivi--tGakS~e~a~~a~~k~~ 118 (204)
.+++|-++|+++- .|..+.++++..+++++
T Consensus 120 ~~~lid~~G~i~~~~~g~~~~~~l~~~i~~ll 151 (158)
T 3eyt_A 120 SLLLIDKAGDLRAHHFGDVSELLLGAEIATLL 151 (158)
T ss_dssp EEEEECTTSEEEEEEESCCCHHHHHHHHHHHH
T ss_pred EEEEECCCCCEEEEEeCCCCHHHHHHHHHHHh
Confidence 4677779999965 48888888888777654
No 117
>2dbc_A PDCL2, unnamed protein product; phosducin-like protein, thioredoxin_FOLD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=24.40 E-value=70 Score=22.95 Aligned_cols=38 Identities=16% Similarity=0.235 Sum_probs=21.4
Q ss_pred EEEEEeCCCceE--EeecCCHHHHHHHHHHHHHHHHHcCC
Q psy9199 89 TTASIWSSGKIT--CTGATSEDQSKIAARRYARCLQRLGF 126 (204)
Q Consensus 89 ~tvlIF~SGKiv--itGakS~e~a~~a~~k~~~~L~~lG~ 126 (204)
.|+++|.+|+++ ..|.......+.....+.+.|++.|.
T Consensus 82 Pt~~~~~~G~~v~~~~G~~~~~~~~~~~~~l~~~l~~~~~ 121 (135)
T 2dbc_A 82 PTIFVYKNGQIEGKFIGIIECGGINLKLEELEWKLSEVGA 121 (135)
T ss_dssp SEEEEESSSSCSEEEESTTTTTCTTCCHHHHHHHHHHHTS
T ss_pred CEEEEEECCEEEEEEEeEEeeCCCcCCHHHHHHHHHHcCC
Confidence 488999999986 56775221111122334455556553
No 118
>3gux_A Putative Zn-dependent exopeptidase; aminopeptidase, phosphorylase/hydrolase-like fold, structura genomics; 1.80A {Bacteroides vulgatus atcc 8482}
Probab=24.27 E-value=1.1e+02 Score=25.99 Aligned_cols=37 Identities=19% Similarity=0.261 Sum_probs=28.9
Q ss_pred CHHHHHHHHHHHHHHHHHcCCcccccee----------eEEEEEEEEe
Q psy9199 106 SEDQSKIAARRYARCLQRLGFKARFTNF----------RVVNVLGTCS 143 (204)
Q Consensus 106 S~e~a~~a~~k~~~~L~~lG~~v~~~~f----------~v~NIvat~~ 143 (204)
|..+ +.+++.|...|+++|+++....| ...||+|...
T Consensus 46 s~~~-~~~~~~l~~~l~~~G~~v~~~~~~~~~~~g~~~~~~Nvia~~~ 92 (314)
T 3gux_A 46 TQAH-KECGEYLAGQLEKFGAKVYNQYADLIAYDGTILKSRNIIGAYK 92 (314)
T ss_dssp SHHH-HHHHHHHHHHHHHTTCEEEEEEEEEECTTSCEEEEEEEEEEES
T ss_pred CHHH-HHHHHHHHHHHHHCCCEEEEEEeeccccCCCcccceEEEEEEC
Confidence 3444 78888999999999998876655 3589999875
No 119
>2pbd_P Profilin-1, profilin I; ternary complex, profilin, actin, poly-proline, loading poly-Pro site, GAB domain, structural protein; HET: HIC ATP; 1.50A {Homo sapiens} SCOP: d.110.1.1 PDB: 1fik_A 1cjf_A 1pfl_A 1fil_A* 2pav_P* 3chw_P* 1awi_A 1cf0_A* 1pne_A 1hlu_P 2btf_P* 3u4l_P* 3ub5_P*
Probab=23.96 E-value=1.2e+02 Score=22.98 Aligned_cols=36 Identities=11% Similarity=0.028 Sum_probs=25.7
Q ss_pred EEEeCCCceEEeecC----CHHHHHHHHHHHHHHHHHcCC
Q psy9199 91 ASIWSSGKITCTGAT----SEDQSKIAARRYARCLQRLGF 126 (204)
Q Consensus 91 vlIF~SGKivitGak----S~e~a~~a~~k~~~~L~~lG~ 126 (204)
+.|.++++.++.|-- ...++..++.++++.|++.||
T Consensus 100 v~i~KT~~alvI~~y~e~~~~g~~~~~ve~ladYL~~~Gy 139 (139)
T 2pbd_P 100 VTVTKTDKTLVLLMGKEGVHGGLINKKCYEMASHLRRSQY 139 (139)
T ss_dssp EEEEECSSEEEEEEECTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred EEEEEcCCEEEEEEcCCCCCHHHHHHHHHHHHHHHHHcCC
Confidence 445555555554433 456999999999999999886
No 120
>2b5x_A YKUV protein, TRXY; thioredoxin-like, oxidoreductase; NMR {Bacillus subtilis} SCOP: c.47.1.10 PDB: 2b5y_A
Probab=23.76 E-value=94 Score=21.48 Aligned_cols=29 Identities=10% Similarity=0.237 Sum_probs=21.5
Q ss_pred EEEEe-CCCceEE--eecCCHHHHHHHHHHHH
Q psy9199 90 TASIW-SSGKITC--TGATSEDQSKIAARRYA 118 (204)
Q Consensus 90 tvlIF-~SGKivi--tGakS~e~a~~a~~k~~ 118 (204)
++.++ ++|+++- .|..+.++.+..+++++
T Consensus 113 ~~~lid~~G~i~~~~~g~~~~~~l~~~l~~~l 144 (148)
T 2b5x_A 113 AYYVFDKTGQLRHFQAGGSGMKMLEKRVNRVL 144 (148)
T ss_dssp EEEEECTTCBEEEEEESCSTTHHHHHHHHHHH
T ss_pred EEEEECCCCcEEEEecCCCCHHHHHHHHHHHH
Confidence 55555 8999876 47778888888777654
No 121
>2fp3_A Caspase NC; apoptosis, initiator caspase activation, dimerization, active site conformation, hydrolysis/apoptosis complex; 2.50A {Drosophila melanogaster}
Probab=23.58 E-value=32 Score=29.78 Aligned_cols=47 Identities=9% Similarity=0.020 Sum_probs=32.2
Q ss_pred EEecC--CcEEEEEeCCCceEEeecCCHHHHHHHHHHHHHHHHHcCCccc
Q psy9199 82 MKLRK--PYTTASIWSSGKITCTGATSEDQSKIAARRYARCLQRLGFKAR 129 (204)
Q Consensus 82 ~Rl~~--P~~tvlIF~SGKivitGakS~e~a~~a~~k~~~~L~~lG~~v~ 129 (204)
|+|.. |+..+||+.+.+.--++ +....+..=++.+.+.|+++||+|.
T Consensus 53 Y~m~~~~~rg~aLIInN~~F~~~~-~~R~Gt~~D~~~L~~~f~~LGF~V~ 101 (316)
T 2fp3_A 53 YKMQSRFNRGVLLMVNIMDYPDQN-RRRIGAEKDSKSLIHLFQELNFTIF 101 (316)
T ss_dssp CCCCCSSCSEEEEEEECCCCSSTT-SCCTTHHHHHHHHHHHHHHTTEEEE
T ss_pred ccCCCCCCCcEEEEEeCcccCCCC-CCCCCcHHHHHHHHHHHHHCCCEEE
Confidence 66653 67888999888765334 4555566666677777888877654
No 122
>3ia1_A THIO-disulfide isomerase/thioredoxin; oxidoreductase, PSI-2, NYSGXRC, structu genomics, protein structure initiative; 1.76A {Thermus thermophilus}
Probab=23.55 E-value=1e+02 Score=21.80 Aligned_cols=29 Identities=17% Similarity=0.035 Sum_probs=21.2
Q ss_pred EEEEEeCCCceE--EeecCCHHHHHHHHHHH
Q psy9199 89 TTASIWSSGKIT--CTGATSEDQSKIAARRY 117 (204)
Q Consensus 89 ~tvlIF~SGKiv--itGakS~e~a~~a~~k~ 117 (204)
.+++|.++|+++ ..|..+.++++..+++.
T Consensus 112 ~~~lid~~G~i~~~~~g~~~~~~l~~~l~~~ 142 (154)
T 3ia1_A 112 WTFVVDREGKVVALFAGRAGREALLDALLLA 142 (154)
T ss_dssp EEEEECTTSEEEEEEESBCCHHHHHHHHHHT
T ss_pred EEEEECCCCCEEEEEcCCCCHHHHHHHHHhc
Confidence 567788999987 56777877777666543
No 123
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=23.45 E-value=82 Score=24.63 Aligned_cols=30 Identities=23% Similarity=0.232 Sum_probs=23.4
Q ss_pred EEEEEeCCCceE--EeecCCHHHHHHHHHHHH
Q psy9199 89 TTASIWSSGKIT--CTGATSEDQSKIAARRYA 118 (204)
Q Consensus 89 ~tvlIF~SGKiv--itGakS~e~a~~a~~k~~ 118 (204)
.|+++|.+|+++ ..|..+.++....+++++
T Consensus 86 Pt~~~~~~G~~~~~~~G~~~~~~l~~~l~~~l 117 (222)
T 3dxb_A 86 PTLLLFKNGEVAATKVGALSKGQLKEFLDANL 117 (222)
T ss_dssp SEEEEEETTEEEEEEESCCCHHHHHHHHHHHS
T ss_pred CEEEEEECCeEEEEeccccChHHHHHHHHhhc
Confidence 478899999986 689888888877766543
No 124
>3lor_A Thiol-disulfide isomerase and thioredoxins; PSI, MCSG, structural genomics, midwest CE structural genomics; HET: MSE; 2.20A {Corynebacterium glutamicum}
Probab=23.18 E-value=1.1e+02 Score=21.75 Aligned_cols=30 Identities=10% Similarity=0.014 Sum_probs=23.1
Q ss_pred EEEEEeCCCceEEe--ecCCHHHHHHHHHHHH
Q psy9199 89 TTASIWSSGKITCT--GATSEDQSKIAARRYA 118 (204)
Q Consensus 89 ~tvlIF~SGKivit--GakS~e~a~~a~~k~~ 118 (204)
.+++|-++|+++-. |..+.++++..+++++
T Consensus 123 ~~~lid~~G~i~~~~~g~~~~~~l~~~i~~ll 154 (160)
T 3lor_A 123 SIILADRKGRIRQVQFGQVDDFVLGLLLGSLL 154 (160)
T ss_dssp EEEEECTTSBEEEEEESCCCHHHHHHHHHHHH
T ss_pred eEEEECCCCcEEEEecCcCCHHHHHHHHHHHH
Confidence 45666689999876 8888888888777654
No 125
>2ctf_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=22.85 E-value=1.1e+02 Score=21.84 Aligned_cols=28 Identities=21% Similarity=0.357 Sum_probs=22.9
Q ss_pred CCCceEEeecCCHHHHHHHHHHHHHHHHHc
Q psy9199 95 SSGKITCTGATSEDQSKIAARRYARCLQRL 124 (204)
Q Consensus 95 ~SGKivitGakS~e~a~~a~~k~~~~L~~l 124 (204)
.++.|.++|. .+++..|...+..+++++
T Consensus 66 ~~~~ItI~G~--~~~V~~a~~~I~~~v~el 93 (102)
T 2ctf_A 66 GEDKITLEGP--TEDVSVAQEQIEGMVKDL 93 (102)
T ss_dssp SSCEEEEEEC--HHHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECC--HHHHHHHHHHHHHHHHHH
Confidence 5889999996 778888888888877765
No 126
>1pyo_A Caspase-2; apoptosis, caspase, alpha-beta, thiol protease, hydrolase-HY inhibitor complex; 1.65A {Homo sapiens} SCOP: c.17.1.1 PDB: 3rjm_A* 2p2c_A 3r5j_A 3r6g_A 3r6l_A 3r7b_A 3r7n_A 3r7s_A
Probab=22.81 E-value=44 Score=26.27 Aligned_cols=49 Identities=14% Similarity=0.226 Sum_probs=35.2
Q ss_pred EEec-CCcEEEEEeCCCceEE-eecCCHHHHHHHHHHHHHHHHHcCCcccc
Q psy9199 82 MKLR-KPYTTASIWSSGKITC-TGATSEDQSKIAARRYARCLQRLGFKARF 130 (204)
Q Consensus 82 ~Rl~-~P~~tvlIF~SGKivi-tGakS~e~a~~a~~k~~~~L~~lG~~v~~ 130 (204)
|++. .|+..+||+.+.+.-- ++-+....+..=++.+.+.++++||+|..
T Consensus 26 Y~m~~~~rG~aLIinn~~F~~~~~l~~R~Gt~~D~~~L~~~f~~LgF~V~~ 76 (167)
T 1pyo_A 26 YRLQSRPRGLALVLSNVHFTGEKELEFRSGGDVDHSTLVTLFKLLGYDVHV 76 (167)
T ss_dssp CCCCCSSSEEEEEEECCCCCSSSCSCCCTTHHHHHHHHHHHHHHTTEEEEE
T ss_pred ccCCCCCceEEEEEeCcccCCCCCCccCCCcHHHHHHHHHHHHHCCCEEEE
Confidence 5555 4678899998887642 24445566677777888999999997654
No 127
>1xhk_A Putative protease LA homolog; LON protease, ATP dependent, catalytic DYAD, hydrolase; HET: MES; 1.90A {Methanocaldococcus jannaschii} SCOP: d.14.1.10
Probab=22.80 E-value=71 Score=25.23 Aligned_cols=23 Identities=13% Similarity=0.125 Sum_probs=19.1
Q ss_pred CceEEeecCCHHHHHHHHHHHHHHHHH
Q psy9199 97 GKITCTGATSEDQSKIAARRYARCLQR 123 (204)
Q Consensus 97 GKivitGakS~e~a~~a~~k~~~~L~~ 123 (204)
|+..+|| +..+++.+++...|++
T Consensus 39 g~~~~tG----~~~res~~~~~a~l~~ 61 (187)
T 1xhk_A 39 HLLNISG----DIAKHSITLASALSKK 61 (187)
T ss_dssp EEESSCH----HHHHHHHHHHHHHHHH
T ss_pred CceEEec----HHHHHHHHHHHHHHhh
Confidence 7877888 7788888888888888
No 128
>2cte_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=22.70 E-value=1e+02 Score=21.43 Aligned_cols=27 Identities=19% Similarity=0.134 Sum_probs=22.2
Q ss_pred CCceEEeecCCHHHHHHHHHHHHHHHHHc
Q psy9199 96 SGKITCTGATSEDQSKIAARRYARCLQRL 124 (204)
Q Consensus 96 SGKivitGakS~e~a~~a~~k~~~~L~~l 124 (204)
+|.+.++|. .+.+..|...+..++++.
T Consensus 59 ~~~V~I~G~--~e~v~~A~~~I~~i~~~~ 85 (94)
T 2cte_A 59 SNQIKITGT--KEGIEKARHEVLLISAEQ 85 (94)
T ss_dssp CCEEEEEEC--HHHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEEC--HHHHHHHHHHHHHHhhcc
Confidence 689999996 888888888888877653
No 129
>1vra_B Arginine biosynthesis bifunctional protein ARGJ; 10175521, S genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 2.00A {Bacillus halodurans}
Probab=22.52 E-value=55 Score=27.23 Aligned_cols=21 Identities=19% Similarity=0.460 Sum_probs=18.8
Q ss_pred eEEeecCCHHHHHHHHHHHHH
Q psy9199 99 ITCTGATSEDQSKIAARRYAR 119 (204)
Q Consensus 99 ivitGakS~e~a~~a~~k~~~ 119 (204)
|.++||+|+++|+.+++.++.
T Consensus 95 v~V~GA~s~~~A~~iA~sIa~ 115 (215)
T 1vra_B 95 VEVTGAANDQEAGMVAKQIVG 115 (215)
T ss_dssp EEEEEESSHHHHHHHHHHHHT
T ss_pred EEEECCCCHHHHHHHHHHHcC
Confidence 578999999999999998875
No 130
>2v1m_A Glutathione peroxidase; selenium, selenocysteine, oxidoreductase, lipid peroxidase, schistosoma detoxification pathway; 1.00A {Schistosoma mansoni} PDB: 2wgr_A
Probab=22.10 E-value=75 Score=22.87 Aligned_cols=31 Identities=6% Similarity=-0.110 Sum_probs=24.1
Q ss_pred EEEEEeCCCceEEe--ecCCHHHHHHHHHHHHH
Q psy9199 89 TTASIWSSGKITCT--GATSEDQSKIAARRYAR 119 (204)
Q Consensus 89 ~tvlIF~SGKivit--GakS~e~a~~a~~k~~~ 119 (204)
.+++|.++|+++-. |..+.+++...++++++
T Consensus 135 ~~~lid~~G~i~~~~~g~~~~~~l~~~i~~ll~ 167 (169)
T 2v1m_A 135 SKFLVDRQGQPVKRYSPTTAPYDIEGDIMELLE 167 (169)
T ss_dssp CEEEECTTSCEEEEECTTSCGGGGHHHHHHHHH
T ss_pred eEEEECCCCCEEEEcCCCCCHHHHHHHHHHHhc
Confidence 68899999999854 77788887777776643
No 131
>2jkg_A Profilin; proline-rich ligand, protein-binding, malaria, cytoskeleton; 1.89A {Plasmodium falciparum} PDB: 2jkf_A
Probab=22.10 E-value=1.2e+02 Score=24.49 Aligned_cols=46 Identities=22% Similarity=0.077 Sum_probs=32.3
Q ss_pred EEecCCcEEEEEeCC-CceEEeecCCHH------HHHHHHHHHHHHHHHcCCc
Q psy9199 82 MKLRKPYTTASIWSS-GKITCTGATSED------QSKIAARRYARCLQRLGFK 127 (204)
Q Consensus 82 ~Rl~~P~~tvlIF~S-GKivitGakS~e------~a~~a~~k~~~~L~~lG~~ 127 (204)
++-+..+.=+.|..+ |..++.|.-+++ .++.++.+|++.|.+.|+.
T Consensus 120 i~gkKgkgGv~ivKT~~qaiVIg~YdE~k~~~~g~c~~~ve~LadYL~~~Gy~ 172 (179)
T 2jkg_A 120 ATCAKLKGGLHLVKVPGGNILVVLYDEEKEQDRGNSKIAALTFAKELAESSQL 172 (179)
T ss_dssp EEEEETTEEEEEEEETTTEEEEEEEEGGGTCCHHHHHHHHHHHHHHHHHC---
T ss_pred EEEecCCCcEEEEEECCCeEEEEEecCCCCcChHHHHHHHHHHHHHHHHcCch
Confidence 455555555666666 666666666655 9999999999999999985
No 132
>3r8n_K 30S ribosomal protein S11; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2ykr_K 3fih_K* 3iy8_K 3j18_K* 2wwl_K 3oar_K 3oaq_K 3ofb_K 3ofa_K 3ofp_K 3ofx_K 3ofy_K 3ofo_K 3r8o_K 4a2i_K 4gd1_K 4gd2_K 3i1m_K 1vs7_K* 3e1a_C ...
Probab=22.09 E-value=30 Score=25.99 Aligned_cols=46 Identities=22% Similarity=0.377 Sum_probs=31.9
Q ss_pred EEecCCcEEEEEe-CCCceEEeecC--CHHHHHHHHHHHHHHHHHcCCc
Q psy9199 82 MKLRKPYTTASIW-SSGKITCTGAT--SEDQSKIAARRYARCLQRLGFK 127 (204)
Q Consensus 82 ~Rl~~P~~tvlIF-~SGKivitGak--S~e~a~~a~~k~~~~L~~lG~~ 127 (204)
+-+.++.-.++.| ++|.+-.-|++ +...|..|++++.+.++++|++
T Consensus 20 vtiTD~~G~~i~~~S~G~~gfKg~rk~tp~AA~~aa~~~~~~~~~~Gi~ 68 (117)
T 3r8n_K 20 VTITDRQGNALGWATAGGSGFRGSRKSTPFAAQVAAERCADAVKEYGIK 68 (117)
T ss_dssp EEEECTTSCCSEEEETGGGSCCGGGGSSHHHHHHHHHHHHHHHTTSCCC
T ss_pred EEEEcCCCCEEEEEcCCccccCCCccCCHHHHHHHHHHHHHHHHHhCCc
Confidence 4555665444444 44666566654 6778888999999999999975
No 133
>2v4i_B Glutamate N-acetyltransferase 2 beta chain; cytoplasm, acyl enzyme, NTN hydrolase, acyltransferase, ornithine acetyl transferase; 2.2A {Streptomyces clavuligerus} PDB: 2vzk_D* 2yep_B* 2vzk_B* 2w4n_B* 2yep_F*
Probab=22.08 E-value=57 Score=27.12 Aligned_cols=21 Identities=24% Similarity=0.387 Sum_probs=18.7
Q ss_pred eEEeecCCHHHHHHHHHHHHH
Q psy9199 99 ITCTGATSEDQSKIAARRYAR 119 (204)
Q Consensus 99 ivitGakS~e~a~~a~~k~~~ 119 (204)
+.++||+|+++|+.+++.++.
T Consensus 88 V~V~GA~s~~~A~~vA~sIa~ 108 (213)
T 2v4i_B 88 VQVTGARDDAQAKRVGKTVVN 108 (213)
T ss_dssp EEEEEESSHHHHHHHHHHHHT
T ss_pred EEEECCCCHHHHHHHHHHHcc
Confidence 578999999999999998875
No 134
>2nn3_C Caspase-1; cysteine protease, hydrolase; 3.00A {Spodoptera frugiperda}
Probab=22.08 E-value=36 Score=29.51 Aligned_cols=49 Identities=18% Similarity=0.312 Sum_probs=33.8
Q ss_pred EEEec-CCcEEEEEeCCCceEEeecCCHHHHHHHHHHHHHHHHHcCCccc
Q psy9199 81 TMKLR-KPYTTASIWSSGKITCTGATSEDQSKIAARRYARCLQRLGFKAR 129 (204)
Q Consensus 81 i~Rl~-~P~~tvlIF~SGKivitGakS~e~a~~a~~k~~~~L~~lG~~v~ 129 (204)
.|++. .|+..+||+.+.+.--.+.+....+..=++.+.+.|+++||+|.
T Consensus 52 ~Y~m~~~~rg~aLIInN~~F~~~~l~~R~Gt~~Da~~L~~~f~~LGF~V~ 101 (310)
T 2nn3_C 52 YYNMNHKHRGMAIIFNHEHFDIHSLKSRTGTNVDSDNLSKVLKTLGFKVT 101 (310)
T ss_dssp BCCCCSSBCCEEEEEECCCCSSTTCCCCTTHHHHHHHHHHHHHHTTCEEE
T ss_pred cccCCCCCcCEEEEEechhcCCCCcccCCCCHHHHHHHHHHHHHCCCEEE
Confidence 36665 45678899998877532334455556666778888889998764
No 135
>3f9u_A Putative exported cytochrome C biogenesis-related; exported cytochrome C biogenesis-related protein, bacteroide fragilis; 2.20A {Bacteroides fragilis nctc 9343}
Probab=22.06 E-value=84 Score=23.12 Aligned_cols=34 Identities=3% Similarity=-0.165 Sum_probs=26.7
Q ss_pred EEEEe-CCCceEE--eecCC-HHHHHHHHHHHHHHHHH
Q psy9199 90 TASIW-SSGKITC--TGATS-EDQSKIAARRYARCLQR 123 (204)
Q Consensus 90 tvlIF-~SGKivi--tGakS-~e~a~~a~~k~~~~L~~ 123 (204)
|..+| ++|+++- .|..+ .++....+++.++..++
T Consensus 133 t~~lid~~G~~~~~~~G~~~~~~~l~~~l~~~l~~~~~ 170 (172)
T 3f9u_A 133 FYVLIDNEGNPLNKSYAYDEDISKYINFLQTGLENYRK 170 (172)
T ss_dssp EEEEECTTSCBSSCCBCSCCCHHHHHHHHHHHHHHHHH
T ss_pred eEEEECCCCCEEeeccCCCCCHHHHHHHHHHHHHHhhc
Confidence 66666 8999974 69988 99998888887776654
No 136
>2opa_A Probable tautomerase YWHB; homohexamer, 4-oxalocrotonate tautomerase, inhibitor, 2-FLUO hydroxycinnamate, isomerase; HET: FHC; 2.40A {Bacillus subtilis} PDB: 2op8_A*
Probab=22.03 E-value=1.4e+02 Score=18.10 Aligned_cols=34 Identities=6% Similarity=0.106 Sum_probs=25.8
Q ss_pred EEeecCCHHHHHHHHHHHHHHHHH-cCCcccccee
Q psy9199 100 TCTGATSEDQSKIAARRYARCLQR-LGFKARFTNF 133 (204)
Q Consensus 100 vitGakS~e~a~~a~~k~~~~L~~-lG~~v~~~~f 133 (204)
.+.+.+|.++-+.-++.+.+.|.+ +|.+......
T Consensus 6 ~~~~grs~eqk~~l~~~i~~~l~~~lg~~~~~v~V 40 (61)
T 2opa_A 6 KMLEGRTDEQKRNLVEKVTEAVKETTGASEEKIVV 40 (61)
T ss_dssp EEESCCCHHHHHHHHHHHHHHHHHHHCCCGGGCEE
T ss_pred EEcCCCCHHHHHHHHHHHHHHHHHHhCcCcCeEEE
Confidence 344557999999999999999987 6887544333
No 137
>3fsi_A RT, reverse transcriptase domain; transferase/DNA MMLV RT, protein-DNA complex, drug-DNA complex; HET: OWL; 1.75A {Moloney murine leukemia virus} SCOP: e.8.1.2 PDB: 1d1u_A 1n4l_A* 1ztt_A 2fjv_A* 2fjw_A 2fjx_A* 2fvp_A 2fvq_A 2fvr_A 2fvs_A 2r2r_A* 2r2s_A* 2r2t_A* 2r2u_A* 1ztw_A* 1i6j_A 1qaj_A* 1d0e_A* 1nnd_A 1mml_A ...
Probab=21.94 E-value=95 Score=25.14 Aligned_cols=43 Identities=23% Similarity=0.281 Sum_probs=32.8
Q ss_pred CcEEEEEeCCCceEEeecCCHHHHHHHHHHHHHHHHHcCCccccc
Q psy9199 87 PYTTASIWSSGKITCTGATSEDQSKIAARRYARCLQRLGFKARFT 131 (204)
Q Consensus 87 P~~tvlIF~SGKivitGakS~e~a~~a~~k~~~~L~~lG~~v~~~ 131 (204)
|.+.+.+|-.- |++. +++.++....++.+.+.|++.|+.+...
T Consensus 192 ~~~~v~~Y~DD-ili~-s~~~eeh~~~l~~v~~~L~~~gl~l~~~ 234 (255)
T 3fsi_A 192 PDLILLQYVDD-LLLA-ATSELDCQQGTRALLQTLGNLGYRASAK 234 (255)
T ss_dssp TTCEEEEETTE-EEEE-ESSHHHHHHHHHHHHHHHHHHTCCBCTT
T ss_pred cCcEEEEEcCC-eEEE-eCCHHHHHHHHHHHHHHHHHCCeEECHH
Confidence 45567777665 4444 4699999999999999999999876554
No 138
>1mek_A Protein disulfide isomerase; electron transport, redox-active center, endoplasmic reticulum; NMR {Homo sapiens} SCOP: c.47.1.2
Probab=21.82 E-value=54 Score=21.94 Aligned_cols=27 Identities=15% Similarity=0.172 Sum_probs=19.5
Q ss_pred EEEEEeCCCce----EEeecCCHHHHHHHHH
Q psy9199 89 TTASIWSSGKI----TCTGATSEDQSKIAAR 115 (204)
Q Consensus 89 ~tvlIF~SGKi----vitGakS~e~a~~a~~ 115 (204)
.++.+|.+|+. ...|..+.++....++
T Consensus 83 Pt~~~~~~g~~~~~~~~~g~~~~~~l~~~l~ 113 (120)
T 1mek_A 83 PTIKFFRNGDTASPKEYTAGREADDIVNWLK 113 (120)
T ss_dssp SEEEEEESSCSSSCEECCCCSSHHHHHHHHH
T ss_pred cEEEEEeCCCcCCcccccCccCHHHHHHHHH
Confidence 47788899984 4678878777665554
No 139
>3ul3_B Thioredoxin, thioredoxin-2; PTEX, oxidoreductase; 2.90A {Plasmodium falciparum}
Probab=21.82 E-value=65 Score=22.56 Aligned_cols=27 Identities=7% Similarity=0.019 Sum_probs=20.4
Q ss_pred EEEEEeCCCceEE--eecCCHHHHHHHHH
Q psy9199 89 TTASIWSSGKITC--TGATSEDQSKIAAR 115 (204)
Q Consensus 89 ~tvlIF~SGKivi--tGakS~e~a~~a~~ 115 (204)
.++.+|.+|+++. .|..+.+++...++
T Consensus 98 Pt~~~~~~G~~~~~~~G~~~~~~l~~~l~ 126 (128)
T 3ul3_B 98 PTIILLKNKTMLARKDHFVSSNDLIALIK 126 (128)
T ss_dssp SEEEEEETTEEEEEESSCCCHHHHHHHHT
T ss_pred CEEEEEECCEEEEEecCCCCHHHHHHHHH
Confidence 4677789999875 58888888776654
No 140
>3m21_A Probable tautomerase HP_0924; 4-oxalocrotonate tautomerase, catalytic proline, hexamer, BE beta, isomerase; 1.90A {Helicobacter pylori} PDB: 2orm_A
Probab=21.80 E-value=1.6e+02 Score=18.64 Aligned_cols=29 Identities=7% Similarity=0.037 Sum_probs=23.7
Q ss_pred cCCHHHHHHHHHHHHHHHHH-cCCccccce
Q psy9199 104 ATSEDQSKIAARRYARCLQR-LGFKARFTN 132 (204)
Q Consensus 104 akS~e~a~~a~~k~~~~L~~-lG~~v~~~~ 132 (204)
.+|.|+-+.-++.+.+.+.+ +|.+.....
T Consensus 13 grs~eqK~~l~~~lt~~l~~~lg~p~~~v~ 42 (67)
T 3m21_A 13 GPTNEQKQQLIEGVSDLMVKVLNKNKASIV 42 (67)
T ss_dssp BSCHHHHHHHHHHHHHHHHHHHCCCGGGCE
T ss_pred CCCHHHHHHHHHHHHHHHHHHHCcCcccEE
Confidence 68999999999999999976 788754433
No 141
>1qgv_A Spliceosomal protein U5-15KD; snRNP, thioredoxin, transcription; 1.40A {Homo sapiens} SCOP: c.47.1.8 PDB: 1syx_A 1pqn_A
Probab=21.69 E-value=81 Score=22.97 Aligned_cols=33 Identities=12% Similarity=-0.051 Sum_probs=23.0
Q ss_pred EEEEEeCCCceEE-----------eecC-CHHHHHHHHHHHHHHH
Q psy9199 89 TTASIWSSGKITC-----------TGAT-SEDQSKIAARRYARCL 121 (204)
Q Consensus 89 ~tvlIF~SGKivi-----------tGak-S~e~a~~a~~k~~~~L 121 (204)
.|+++|.+|+.+- .|+- +.++....++++.+-.
T Consensus 79 Pt~~~~~~G~~v~~~~g~~~~~~~~g~~~~~~~l~~~i~~~~~~~ 123 (142)
T 1qgv_A 79 CTVMFFFRNKHIMIDLGTGNNNKINWAMEDKQEMVDIIETVYRGA 123 (142)
T ss_dssp CEEEEEETTEEEEEECC------CCSCCSCHHHHHHHHHHHHHHH
T ss_pred CEEEEEECCcEEEEecCCCCcceeeeecCcHHHHHHHHHHHHHHH
Confidence 4778889999873 4554 4777777777766543
No 142
>1a8l_A Protein disulfide oxidoreductase; PDI, thioredoxin fold; 1.90A {Pyrococcus furiosus} SCOP: c.47.1.2 c.47.1.2 PDB: 1j08_A
Probab=21.67 E-value=81 Score=24.20 Aligned_cols=29 Identities=17% Similarity=-0.005 Sum_probs=22.5
Q ss_pred EEEEEeCCCceE--EeecCCHHHHHHHHHHH
Q psy9199 89 TTASIWSSGKIT--CTGATSEDQSKIAARRY 117 (204)
Q Consensus 89 ~tvlIF~SGKiv--itGakS~e~a~~a~~k~ 117 (204)
.|+.+|.+|+.+ ..|..+.++....+++.
T Consensus 194 Pt~~~~~~G~~~~~~~G~~~~~~l~~~l~~~ 224 (226)
T 1a8l_A 194 PKIVIQVNGEDRVEFEGAYPEKMFLEKLLSA 224 (226)
T ss_dssp CEEEEEETTEEEEEEESCCCHHHHHHHHHHH
T ss_pred CeEEEEeCCceeEEEcCCCCHHHHHHHHHHh
Confidence 468899999875 67998988877766654
No 143
>2hh2_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=21.51 E-value=58 Score=23.39 Aligned_cols=26 Identities=15% Similarity=0.050 Sum_probs=20.7
Q ss_pred CceEEeecCCHHHHHHHHHHHHHHHHHc
Q psy9199 97 GKITCTGATSEDQSKIAARRYARCLQRL 124 (204)
Q Consensus 97 GKivitGakS~e~a~~a~~k~~~~L~~l 124 (204)
+.+.++| +.+.++.|.+.+..++++.
T Consensus 55 r~V~I~G--~~e~v~~A~~~I~~~i~e~ 80 (107)
T 2hh2_A 55 KLFIIRG--SPQQIDHAKQLIEEKIEGP 80 (107)
T ss_dssp EEEEEES--CHHHHHHHHHHHHHHSCSC
T ss_pred eEEEEEC--CHHHHHHHHHHHHHHHhcc
Confidence 6788998 7889999988888776553
No 144
>3cmi_A Peroxiredoxin HYR1; thioredoxin-like fold, oxidoreductase, peroxidase, redox-ACT center; 2.02A {Saccharomyces cerevisiae}
Probab=21.34 E-value=66 Score=23.70 Aligned_cols=30 Identities=10% Similarity=-0.017 Sum_probs=24.0
Q ss_pred EEEEEeCCCceEEe--ecCCHHHHHHHHHHHH
Q psy9199 89 TTASIWSSGKITCT--GATSEDQSKIAARRYA 118 (204)
Q Consensus 89 ~tvlIF~SGKivit--GakS~e~a~~a~~k~~ 118 (204)
.+++|.++|+++-. |..+.++++..+++++
T Consensus 136 ~~~lid~~G~i~~~~~g~~~~~~l~~~i~~ll 167 (171)
T 3cmi_A 136 EKFLVDKKGKVYERYSSLTKPSSLSETIEELL 167 (171)
T ss_dssp CEEEECSSSCEEEEECTTSCGGGGHHHHHHHH
T ss_pred eEEEECCCCCEEEEeCCCCCHHHHHHHHHHHH
Confidence 68999999999876 6668888877777654
No 145
>2h54_A Caspase-1; allosteric site, dimer interface, hydrolase; HET: PHQ; 1.80A {Homo sapiens} PDB: 1rwm_A* 1rwk_A* 1rwo_A* 1rwp_A* 1rwv_A* 1rww_A* 1rwn_A* 2h48_A* 2h4w_A* 1rwx_A* 2hbq_A* 2hby_A* 1ibc_A 3d6m_A* 2h4y_A* 2h51_A* 3d6f_A* 3d6h_A* 2hbz_A* 2hbr_A* ...
Probab=21.32 E-value=71 Score=25.30 Aligned_cols=47 Identities=13% Similarity=0.167 Sum_probs=34.5
Q ss_pred EEecC---CcEEEEEeCCCceEEeecCCHHHHHHHHHHHHHHHHHcCCcccc
Q psy9199 82 MKLRK---PYTTASIWSSGKITCTGATSEDQSKIAARRYARCLQRLGFKARF 130 (204)
Q Consensus 82 ~Rl~~---P~~tvlIF~SGKivitGakS~e~a~~a~~k~~~~L~~lG~~v~~ 130 (204)
|++.. ++-.+||+.+.+.- +......+..=++.+.+.|+++||+|..
T Consensus 34 Y~m~~~~~~~g~ALIInn~~f~--~~~~R~G~~~Da~~L~~~f~~LgF~V~~ 83 (178)
T 2h54_A 34 YPIMDKSSRTRLALIICNEEFD--SIPRRTGAEVDITGMTMLLQNLGYSVDV 83 (178)
T ss_dssp CCCCCTTTCCCEEEEEECCCCS--SSCCCTTHHHHHHHHHHHHHHTTCEEEE
T ss_pred cCCCCCCCcCCEEEEEehhhcC--CCccCCCCHHHHHHHHHHHHHCCCEEEE
Confidence 66653 25688999998873 4455666677778899999999998654
No 146
>1nw9_B Caspase 9, apoptosis-related cysteine protease; XIAP, caspase inhibition, caspase activation, dimerization; 2.40A {Homo sapiens} SCOP: c.17.1.1 PDB: 1jxq_A* 2ar9_A
Probab=20.80 E-value=44 Score=28.07 Aligned_cols=49 Identities=18% Similarity=0.244 Sum_probs=32.9
Q ss_pred EEec-CCcEEEEEeCCCceEEe-ecCCHHHHHHHHHHHHHHHHHcCCcccc
Q psy9199 82 MKLR-KPYTTASIWSSGKITCT-GATSEDQSKIAARRYARCLQRLGFKARF 130 (204)
Q Consensus 82 ~Rl~-~P~~tvlIF~SGKivit-GakS~e~a~~a~~k~~~~L~~lG~~v~~ 130 (204)
|++. .|+..+||+.+.+.--. +-+....+..=++.+.+.|+++||+|..
T Consensus 14 Y~m~~~~rg~aLIInn~~f~~~~~l~~R~Gt~~D~~~L~~~f~~LgF~V~~ 64 (277)
T 1nw9_B 14 YILSMEPCGHCLIINNVNFCRESGLRTRTGSNIDCEKLRRRFSSLHFMVEV 64 (277)
T ss_dssp CCCCCSSCEEEEEEECCCCCGGGTCCCCTTHHHHHHHHHHHHHHTTEEEEE
T ss_pred eeCCCCcccEEEEEeCcccCCCCCCCCCCCcHHHHHHHHHHHHHCCCEEEE
Confidence 6665 47789999999877421 3334455555666777888888887543
No 147
>3d9y_A Profilin; yeast, actin-binding, cytoskeleton, protein; 1.65A {Schizosaccharomyces pombe} SCOP: d.110.1.0 PDB: 3dav_A
Probab=20.76 E-value=1.9e+02 Score=21.31 Aligned_cols=38 Identities=8% Similarity=0.006 Sum_probs=27.8
Q ss_pred EEEEEeCCCceEEeecC----CHHHHHHHHHHHHHHHHHcCC
Q psy9199 89 TTASIWSSGKITCTGAT----SEDQSKIAARRYARCLQRLGF 126 (204)
Q Consensus 89 ~tvlIF~SGKivitGak----S~e~a~~a~~k~~~~L~~lG~ 126 (204)
.-+.|.++++.++.|-- ...++..++.++++.|++.||
T Consensus 86 ~Gv~i~kT~~aivi~~y~e~~~~g~~~~~ve~ladYL~~~Gy 127 (127)
T 3d9y_A 86 EGIICVATKLCILVSHYPETTLPGEAAKITEALADYLVGVGY 127 (127)
T ss_dssp EEEEEEECSSEEEEEEECTTSCHHHHHHHHHHHHHHHHHHTC
T ss_pred ceEEEEECCCEEEEEEcCCCCCHHHHHHHHHHHHHHHHHcCC
Confidence 34555666666665543 456899999999999999886
No 148
>3ha9_A Uncharacterized thioredoxin-like protein; PSI, MCSG, structural G midwest center for structural genomics, protein structure initiative; 1.70A {Aeropyrum pernix}
Probab=20.68 E-value=1.1e+02 Score=21.93 Aligned_cols=30 Identities=13% Similarity=0.082 Sum_probs=23.2
Q ss_pred EEEEEeCCCceEEeecC-CHHHHHHHHHHHH
Q psy9199 89 TTASIWSSGKITCTGAT-SEDQSKIAARRYA 118 (204)
Q Consensus 89 ~tvlIF~SGKivitGak-S~e~a~~a~~k~~ 118 (204)
.+++|-.+|+++-.|.. +.++++..++++.
T Consensus 133 ~~~lid~~G~i~~~g~~~~~~~l~~~l~~l~ 163 (165)
T 3ha9_A 133 YIVIMDKSSNVLYAGTTPSLGELESVIKSVQ 163 (165)
T ss_dssp EEEEEETTCCEEEEEESCCHHHHHHHHHHC-
T ss_pred EEEEEcCCCcEEEeCCCCCHHHHHHHHHHHh
Confidence 45555699999999998 8888888777653
No 149
>1sen_A Thioredoxin-like protein P19; endoplasmic reticulum, RP19, structural genomics, PSI, protein structure initiative; 1.20A {Homo sapiens} SCOP: c.47.1.1 PDB: 2k8v_A
Probab=20.44 E-value=86 Score=23.40 Aligned_cols=35 Identities=17% Similarity=0.154 Sum_probs=26.0
Q ss_pred EEEEEe-CCCceE--Eeec----------CCHHHHHHHHHHHHHHHHH
Q psy9199 89 TTASIW-SSGKIT--CTGA----------TSEDQSKIAARRYARCLQR 123 (204)
Q Consensus 89 ~tvlIF-~SGKiv--itGa----------kS~e~a~~a~~k~~~~L~~ 123 (204)
.|+.+| .+|+++ ..|. .+.+++...+++++..++.
T Consensus 105 Pt~~~~d~~G~~~~~~~G~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~ 152 (164)
T 1sen_A 105 PRILFLDPSGKVHPEIINENGNPSYKYFYVSAEQVVQGMKEAQERLTG 152 (164)
T ss_dssp SEEEEECTTSCBCTTCCCTTSCTTSTTCCCSHHHHHHHHHHHHHHHGG
T ss_pred CeEEEECCCCCEEEEEeCCCCccchhcccCCHHHHHHHHHHHHHhccH
Confidence 478888 899998 6785 5777888877777665544
No 150
>3kjj_A NMB1025 protein; YJGF protein family, OPPF, structural genomics, oxford protein production facility, UN function; 1.90A {Neisseria meningitidis serogroup B} PDB: 3kjk_A
Probab=20.33 E-value=65 Score=23.99 Aligned_cols=38 Identities=24% Similarity=0.290 Sum_probs=28.6
Q ss_pred EEeCCCceEEeecCCHHHHHHHHHHHHHHHHHcCCccc
Q psy9199 92 SIWSSGKITCTGATSEDQSKIAARRYARCLQRLGFKAR 129 (204)
Q Consensus 92 lIF~SGKivitGakS~e~a~~a~~k~~~~L~~lG~~v~ 129 (204)
++|-||-+-..+..=+++++.+++.+..+|+..|....
T Consensus 29 ~lfvSGq~~~d~~d~~~Q~~~~l~nl~~~L~~aG~~l~ 66 (128)
T 3kjj_A 29 LIFLSGMVPENGETAAEQTADVLAQIDRWLAECGSDKA 66 (128)
T ss_dssp EEEECCBCCSSCSSHHHHHHHHHHHHHHHHHHTTCCGG
T ss_pred EEEEeecCCCCCCCHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 57777765443334578999999999999999997543
No 151
>2l5o_A Putative thioredoxin; structural genomics, unknown function, PSI-2, protein struct initiative; NMR {Neisseria meningitidis serogroup B}
Probab=20.24 E-value=1.2e+02 Score=21.29 Aligned_cols=30 Identities=17% Similarity=0.070 Sum_probs=21.8
Q ss_pred EEEEeCCCceE--EeecCCHHHHHHHHHHHHH
Q psy9199 90 TASIWSSGKIT--CTGATSEDQSKIAARRYAR 119 (204)
Q Consensus 90 tvlIF~SGKiv--itGakS~e~a~~a~~k~~~ 119 (204)
.++|-.+|+++ ..|..+.++....+++++.
T Consensus 110 ~~lid~~G~i~~~~~g~~~~~~l~~~l~~ll~ 141 (153)
T 2l5o_A 110 SVLIGKKGEILKTYVGEPDFGKLYQEIDTAWR 141 (153)
T ss_dssp EEEECSSSCCCEEEESSCCHHHHHHHHHHHHH
T ss_pred EEEECCCCcEEEEEcCCCCHHHHHHHHHHHHH
Confidence 44444899996 7788888888877775543
No 152
>2dj0_A Thioredoxin-related transmembrane protein 2; AVLA237, CGI-31 protein, TXNDC14, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.23 E-value=77 Score=22.44 Aligned_cols=23 Identities=17% Similarity=0.231 Sum_probs=17.6
Q ss_pred EEEEeccCcEE--EEecCCCCcccc
Q psy9199 180 TLKIFSTGGIT--VTACNDSNKIPV 202 (204)
Q Consensus 180 t~lIF~sGkiv--itGak~~~~~~~ 202 (204)
|+++|..|+++ ..|..+.+++..
T Consensus 90 t~~~~~~G~~~~~~~G~~~~~~l~~ 114 (137)
T 2dj0_A 90 TLILFQGGKEAMRRPQIDKKGRAVS 114 (137)
T ss_dssp EEEEESSSSEEEEESCBCSSSCBCC
T ss_pred EEEEEECCEEEEEecCcCchHHHHH
Confidence 56778899987 778888777654
No 153
>3evi_A Phosducin-like protein 2; alpha beta, 3-layer(ABA) sandwich, unknown function; 2.70A {Homo sapiens}
Probab=20.07 E-value=30 Score=25.16 Aligned_cols=38 Identities=16% Similarity=0.232 Sum_probs=22.6
Q ss_pred EEEEEeCCCceE--EeecCCHHHHHHHHHHHHHHHHHcCC
Q psy9199 89 TTASIWSSGKIT--CTGATSEDQSKIAARRYARCLQRLGF 126 (204)
Q Consensus 89 ~tvlIF~SGKiv--itGakS~e~a~~a~~k~~~~L~~lG~ 126 (204)
.|+++|++|+.+ +.|+.+.-..+...+.+-..|.+.|+
T Consensus 75 PT~~~fk~G~~v~~~~G~~~~gg~~~~~~~le~~L~~~g~ 114 (118)
T 3evi_A 75 PTIFVYKNGQIEAKFIGIIECGGINLKLEELEWKLAEVGA 114 (118)
T ss_dssp SEEEEEETTEEEEEEESTTTTTCSSCCHHHHHHHHHTTTS
T ss_pred CEEEEEECCEEEEEEeChhhhCCCCCCHHHHHHHHHHcCC
Confidence 589999999986 45765432212233344455556653
No 154
>2ju5_A Thioredoxin disulfide isomerase; protein, oxidoreductase; NMR {Chlamydophila pneumoniae}
Probab=20.05 E-value=1.3e+02 Score=21.84 Aligned_cols=30 Identities=10% Similarity=0.024 Sum_probs=21.0
Q ss_pred EEEEEe-CCCceEEe-ecC--CHHHHHHHHHHHH
Q psy9199 89 TTASIW-SSGKITCT-GAT--SEDQSKIAARRYA 118 (204)
Q Consensus 89 ~tvlIF-~SGKivit-Gak--S~e~a~~a~~k~~ 118 (204)
.++.+| .+|+++-. |.. +.++....+++++
T Consensus 118 Pt~~~~d~~G~~~~~~G~~~~~~~~l~~~l~~~l 151 (154)
T 2ju5_A 118 PELVFIDAEGKQLARMGFEPGGGAAYVSKVKSAL 151 (154)
T ss_dssp SEEEEECTTCCEEEEECCCTTCHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCEEEEecCCCCCHHHHHHHHHHHH
Confidence 366677 89998765 777 7777776666543
Done!