RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy9199
(204 letters)
>gnl|CDD|239953 cd04517, TLF, TBP-like factors (TLF; also called TLP, TRF, TRP),
which are found in most metazoans. TLFs and TBPs have
well-conserved core domains; however, they only share
about 60% similarity. TLFs, like TBPs, interact with
TFIIA and TFIIB, which are part of the basal
transcription machinery. Yet, in contrast to TBPs, TLFs
seem not to interact with the TATA-box and even have a
negative effect on the transcription of TATA-containing
promoters. Recent results indicate that TLFs are
involved in the transcription via TATA-less promoters.
Length = 174
Score = 239 bits (611), Expect = 3e-81
Identities = 102/154 (66%), Positives = 124/154 (80%), Gaps = 2/154 (1%)
Query: 42 VDIIINNVVCSFSVRCHLNLRQIALNGVNVEYRRENGMVTMKLRKPYTTASIWSSGKITC 101
+DI+I NVVC FS+RCH++LR++AL G NVEY VTM+LR+P TAS+WSSGKIT
Sbjct: 1 LDILIVNVVCQFSLRCHIDLRKLALAGRNVEYNPRYPKVTMRLREPRATASVWSSGKITI 60
Query: 102 TGATSEDQSKIAARRYARCLQRLGFK-ARFTNFRVVNVLGTCSMPFAIRILQFSEKHRA- 159
TGATSE+++K AARR AR LQ+LGFK RF+NFRVVNVL TCSMPF IR+ + + K+R+
Sbjct: 61 TGATSEEEAKQAARRAARLLQKLGFKVVRFSNFRVVNVLATCSMPFPIRLDELAAKNRSS 120
Query: 160 AEYEPELHPGVTYRITRPKATLKIFSTGGITVTA 193
A YEPELHPGV YRIT P+ATL IFSTG +TVT
Sbjct: 121 ASYEPELHPGVVYRITGPRATLSIFSTGSVTVTG 154
Score = 44.2 bits (105), Expect = 8e-06
Identities = 21/66 (31%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
Query: 131 TNFRVVNVLGTCSMPFAIRILQFSEKHRAAEYEPELHPGVTYRITRPKATLKIFSTGGIT 190
+ +VNV+ S+ I + + + R EY P +P VT R+ P+AT ++S+G IT
Sbjct: 1 LDILIVNVVCQFSLRCHIDLRKLALAGRNVEYNPR-YPKVTMRLREPRATASVWSSGKIT 59
Query: 191 VTACND 196
+T
Sbjct: 60 ITGATS 65
Score = 31.9 bits (73), Expect = 0.11
Identities = 21/66 (31%), Positives = 35/66 (53%), Gaps = 4/66 (6%)
Query: 46 INNVVCSFSVRCHLNLRQIAL-NGVNVEYRRE--NGMVTMKLRKPYTTASIWSSGKITCT 102
+ NV+ + S+ + L ++A N + Y E G V ++ P T SI+S+G +T T
Sbjct: 95 VVNVLATCSMPFPIRLDELAAKNRSSASYEPELHPG-VVYRITGPRATLSIFSTGSVTVT 153
Query: 103 GATSED 108
GA S +
Sbjct: 154 GARSME 159
>gnl|CDD|238352 cd00652, TBP_TLF, TATA box binding protein (TBP): Present in
archaea and eukaryotes, TBPs are transcription factors
that recognize promoters and initiate transcription. TBP
has been shown to be an essential component of three
different transcription initiation complexes: SL1, TFIID
and TFIIIB, directing transcription by RNA polymerases
I, II and III, respectively. TBP binds directly to the
TATA box promoter element, where it nucleates polymerase
assembly, thus defining the transcription start site.
TBP's binding in the minor groove induces a dramatic DNA
bending while its own structure barely changes. The
conserved core domain of TBP, which binds to the TATA
box, has a bipartite structure, with intramolecular
symmetry generating a saddle-shaped structure that sits
astride the DNA. New members of the TBP family, called
TBP-like proteins (TBLP, TLF, TLP) or TBP-related
factors (TRF1, TRF2,TRP), are similar to the core domain
of TBPs, with identical or chemically similar amino
acids at many equivalent positions, suggesting similar
structure. However, TLFs contain distinct, conserved
amino acids at several positions that distinguish them
from TBP.
Length = 174
Score = 223 bits (572), Expect = 3e-75
Identities = 72/161 (44%), Positives = 101/161 (62%), Gaps = 3/161 (1%)
Query: 43 DIIINNVVCSFSVRCHLNLRQIALNGVNVEY-RRENGMVTMKLRKPYTTASIWSSGKITC 101
I N+V + ++ C L+LR+IAL N EY + V M+LR+P TTA I+SSGK+
Sbjct: 1 SPKIQNIVATVNLGCELDLRKIALAARNAEYNPKRFPGVIMRLREPKTTALIFSSGKMVI 60
Query: 102 TGATSEDQSKIAARRYARCLQRLGFKA-RFTNFRVVNVLGTCSMPFAIRILQFSEKHRA- 159
TGA SE+ +K+AAR+YAR LQ+LGF +F F+V N++ +C + F IR+ + + KH
Sbjct: 61 TGAKSEEDAKLAARKYARILQKLGFPVEKFPEFKVQNIVASCDLGFPIRLEELALKHPEN 120
Query: 160 AEYEPELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
A YEPEL PG+ YR+ PK L IF +G I +T I
Sbjct: 121 ASYEPELFPGLIYRMDEPKVVLLIFVSGKIVITGAKSREDI 161
>gnl|CDD|239952 cd04516, TBP_eukaryotes, eukaryotic TATA box binding protein (TBP):
Present in archaea and eukaryotes, TBPs are
transcription factors that recognize promoters and
initiate transcription. TBP has been shown to be an
essential component of three different transcription
initiation complexes: SL1, TFIID and TFIIIB, directing
transcription by RNA polymerases I, II and III,
respectively. TBP binds directly to the TATA box
promoter element, where it nucleates polymerase
assembly, thus defining the transcription start site.
TBP's binding in the minor groove induces a dramatic DNA
bending while its own structure barely changes. The
conserved core domain of TBP, which binds to the TATA
box, has a bipartite structure, with intramolecular
symmetry generating a saddle-shaped structure that sits
astride the DNA.
Length = 174
Score = 171 bits (436), Expect = 1e-54
Identities = 73/159 (45%), Positives = 108/159 (67%), Gaps = 4/159 (2%)
Query: 45 IINNVVCSFSVRCHLNLRQIALNGVNVEY--RRENGMVTMKLRKPYTTASIWSSGKITCT 102
I N+V + ++ C L+L++IAL N EY +R V M++R+P TTA I+SSGK+ CT
Sbjct: 3 KIQNIVATVNLGCKLDLKKIALRARNAEYNPKRFAA-VIMRIREPKTTALIFSSGKMVCT 61
Query: 103 GATSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKHRA-AE 161
GA SED SK+AAR+YAR +Q+LGF A+FT+F++ N++G+C + F IR+ + H+ +
Sbjct: 62 GAKSEDDSKLAARKYARIIQKLGFPAKFTDFKIQNIVGSCDVKFPIRLEGLAHAHKQFSS 121
Query: 162 YEPELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
YEPEL PG+ YR+ +PK L IF +G I +T +I
Sbjct: 122 YEPELFPGLIYRMVKPKIVLLIFVSGKIVLTGAKSREEI 160
>gnl|CDD|177693 PLN00062, PLN00062, TATA-box-binding protein; Provisional.
Length = 179
Score = 161 bits (408), Expect = 2e-50
Identities = 68/151 (45%), Positives = 103/151 (68%), Gaps = 2/151 (1%)
Query: 44 IIINNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCT 102
+ N+V + ++ C L+L++IAL N EY + V M++R+P TTA I++SGK+ CT
Sbjct: 2 PTLQNIVSTVNLDCKLDLKKIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVCT 61
Query: 103 GATSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKHRA-AE 161
GA SE SK+AAR+YAR +Q+LGF A+F +F++ N++G+C + F IR+ + H A +
Sbjct: 62 GAKSEHDSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYAHGAFSS 121
Query: 162 YEPELHPGVTYRITRPKATLKIFSTGGITVT 192
YEPEL PG+ YR+ +PK L IF +G I +T
Sbjct: 122 YEPELFPGLIYRMKQPKIVLLIFVSGKIVIT 152
Score = 28.5 bits (64), Expect = 1.9
Identities = 21/70 (30%), Positives = 35/70 (50%), Gaps = 4/70 (5%)
Query: 43 DIIINNVVCSFSVRCHLNLRQIAL-NGVNVEYRRE--NGMVTMKLRKPYTTASIWSSGKI 99
D I N+V S V+ + L +A +G Y E G++ ++++P I+ SGKI
Sbjct: 91 DFKIQNIVGSCDVKFPIRLEGLAYAHGAFSSYEPELFPGLI-YRMKQPKIVLLIFVSGKI 149
Query: 100 TCTGATSEDQ 109
TGA ++
Sbjct: 150 VITGAKVREE 159
>gnl|CDD|225012 COG2101, SPT15, TATA-box binding protein (TBP), component of TFIID
and TFIIIB [Transcription].
Length = 185
Score = 117 bits (296), Expect = 1e-33
Identities = 49/159 (30%), Positives = 80/159 (50%), Gaps = 6/159 (3%)
Query: 39 DPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYRREN--GMVTMKLRKPYTTASIWSS 96
E I I N+V S + L+L ++AL+ EY E G+V +L +P T A I+ S
Sbjct: 3 TSEPTITIENIVASVDLGQELDLEEVALDLPGAEYNPEQFPGLV-YRLEEPKTAALIFRS 61
Query: 97 GKITCTGATSEDQSKIAARRYARCLQRLGFKARFT-NFRVVNVLGTCSMPFAIRI--LQF 153
GK+ CTGA S + A ++ A+ L+ G F +V N++ + + + + +
Sbjct: 62 GKVVCTGAKSVEDVHRAVKKLAKKLKDGGIDIDFEPEIKVQNIVASADLGVELNLNAIAI 121
Query: 154 SEKHRAAEYEPELHPGVTYRITRPKATLKIFSTGGITVT 192
EYEPE PG+ YR+ P+ L +F +G + +T
Sbjct: 122 GLGLENIEYEPEQFPGLVYRLDEPRVVLLLFGSGKLVIT 160
Score = 57.8 bits (140), Expect = 1e-10
Identities = 32/91 (35%), Positives = 48/91 (52%), Gaps = 5/91 (5%)
Query: 39 DPEVDIIINNVVCSFSVRCHLNLRQIA--LNGVNVEYRREN--GMVTMKLRKPYTTASIW 94
D E +I + N+V S + LNL IA L N+EY E G+V +L +P ++
Sbjct: 94 DFEPEIKVQNIVASADLGVELNLNAIAIGLGLENIEYEPEQFPGLV-YRLDEPRVVLLLF 152
Query: 95 SSGKITCTGATSEDQSKIAARRYARCLQRLG 125
SGK+ TGA SE+ ++ A + L+ LG
Sbjct: 153 GSGKLVITGAKSEEDAEQAVEKIQSRLEELG 183
Score = 45.1 bits (107), Expect = 4e-06
Identities = 15/35 (42%), Positives = 19/35 (54%)
Query: 160 AEYEPELHPGVTYRITRPKATLKIFSTGGITVTAC 194
AEY PE PG+ YR+ PK IF +G + T
Sbjct: 35 AEYNPEQFPGLVYRLEEPKTAALIFRSGKVVCTGA 69
>gnl|CDD|201174 pfam00352, TBP, Transcription factor TFIID (or TATA-binding
protein, TBP).
Length = 86
Score = 107 bits (270), Expect = 1e-30
Identities = 38/87 (43%), Positives = 53/87 (60%), Gaps = 3/87 (3%)
Query: 41 EVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYRRE--NGMVTMKLRKPYTTASIWSSGK 98
DI I N+V S + ++L +IAL N EY E G+V +LR+P TA I+SSGK
Sbjct: 1 FPDIKIQNIVASADLGFPIDLEKIALKLRNAEYEPEQFPGLV-YRLREPKATALIFSSGK 59
Query: 99 ITCTGATSEDQSKIAARRYARCLQRLG 125
+ TGA SE+ +K A R+ A L++LG
Sbjct: 60 VVITGAKSEEDAKKAVRKIAPILKKLG 86
Score = 95.2 bits (238), Expect = 5e-26
Identities = 25/65 (38%), Positives = 40/65 (61%)
Query: 130 FTNFRVVNVLGTCSMPFAIRILQFSEKHRAAEYEPELHPGVTYRITRPKATLKIFSTGGI 189
F + ++ N++ + + F I + + + K R AEYEPE PG+ YR+ PKAT IFS+G +
Sbjct: 1 FPDIKIQNIVASADLGFPIDLEKIALKLRNAEYEPEQFPGLVYRLREPKATALIFSSGKV 60
Query: 190 TVTAC 194
+T
Sbjct: 61 VITGA 65
>gnl|CDD|234746 PRK00394, PRK00394, transcription factor; Reviewed.
Length = 179
Score = 91.1 bits (227), Expect = 4e-23
Identities = 52/159 (32%), Positives = 77/159 (48%), Gaps = 16/159 (10%)
Query: 44 IIINNVVCSFSVRCHLNLRQIALNGVNVEYRREN--GMVTMKLRKPYTTASIWSSGKITC 101
I I N+V S + L+L ++A + N EY E G+V +L P A I+ SGK+ C
Sbjct: 1 IKIENIVASTDLGQELDLEKVAEDLPNAEYNPEQFPGLV-YRLEDPKIAALIFRSGKVVC 59
Query: 102 TGATSEDQSKIAARRYARCLQRLGFK-ARFTNFRVVNVLGTCS----MPF---AIRILQF 153
TGA S + A + + L+ LG K +V N++ S + AI I
Sbjct: 60 TGAKSVEDLHEAVKIIIKKLKELGIKVIDEPEIKVQNIV--ASADLGVELNLNAIAIGLG 117
Query: 154 SEKHRAAEYEPELHPGVTYRITRPKATLKIFSTGGITVT 192
E EYEPE PG+ YR+ PK + +F +G + +T
Sbjct: 118 LEN---IEYEPEQFPGLVYRLDDPKVVVLLFGSGKLVIT 153
Score = 54.5 bits (132), Expect = 1e-09
Identities = 31/92 (33%), Positives = 47/92 (51%), Gaps = 7/92 (7%)
Query: 38 HDPEVDIIINNVVCSFSVRCHLNLRQIA--LNGVNVEYRREN--GMVTMKLRKPYTTASI 93
+PE+ + N+V S + LNL IA L N+EY E G+V +L P +
Sbjct: 88 DEPEIKV--QNIVASADLGVELNLNAIAIGLGLENIEYEPEQFPGLV-YRLDDPKVVVLL 144
Query: 94 WSSGKITCTGATSEDQSKIAARRYARCLQRLG 125
+ SGK+ TGA SE+ ++ A + L+ LG
Sbjct: 145 FGSGKLVITGAKSEEDAEKAVEKILEKLEELG 176
Score = 47.2 bits (113), Expect = 7e-07
Identities = 17/61 (27%), Positives = 31/61 (50%)
Query: 134 RVVNVLGTCSMPFAIRILQFSEKHRAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTA 193
++ N++ + + + + + +E AEY PE PG+ YR+ PK IF +G + T
Sbjct: 2 KIENIVASTDLGQELDLEKVAEDLPNAEYNPEQFPGLVYRLEDPKIAALIFRSGKVVCTG 61
Query: 194 C 194
Sbjct: 62 A 62
>gnl|CDD|239954 cd04518, TBP_archaea, archaeal TATA box binding protein (TBP): TBPs
are transcription factors present in archaea and
eukaryotes, that recognize promoters and initiate
transcription. TBP has been shown to be an essential
component of three different transcription initiation
complexes: SL1, TFIID and TFIIIB, directing
transcription by RNA polymerases I, II and III,
respectively. TBP binds directly to the TATA box
promoter element, where it nucleates polymerase
assembly, thus defining the transcription start site.
TBP's binding in the minor groove induces a dramatic DNA
bending while its own structure barely changes. The
conserved core domain of TBP, which binds to the TATA
box, has a bipartite structure, with intramolecular
symmetry generating a saddle-shaped structure that sits
astride the DNA.
Length = 174
Score = 86.5 bits (215), Expect = 1e-21
Identities = 47/150 (31%), Positives = 75/150 (50%), Gaps = 4/150 (2%)
Query: 46 INNVVCSFSVRCHLNLRQIALNGVNVEYRREN--GMVTMKLRKPYTTASIWSSGKITCTG 103
I N+V S + L+L ++A N EY + G+V +L P A I+ SGK+ CTG
Sbjct: 4 IENIVASVDLGQELDLEKVAAELPNAEYNPDQFPGLV-YRLEDPKIAALIFRSGKMVCTG 62
Query: 104 ATSEDQSKIAARRYARCLQRLGFKARF-TNFRVVNVLGTCSMPFAIRILQFSEKHRAAEY 162
A S + A + + L+ G K +V N++ + + + + + AEY
Sbjct: 63 AKSVEDLHRAVKEIIKKLKDYGIKVIEKPEIKVQNIVASADLGREVNLDAIAIGLPNAEY 122
Query: 163 EPELHPGVTYRITRPKATLKIFSTGGITVT 192
EPE PG+ YR+ PK L +FS+G + +T
Sbjct: 123 EPEQFPGLVYRLDEPKVVLLLFSSGKMVIT 152
Score = 51.1 bits (123), Expect = 3e-08
Identities = 31/88 (35%), Positives = 46/88 (52%), Gaps = 5/88 (5%)
Query: 39 DPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYRREN--GMVTMKLRKPYTTASIWSS 96
PE I + N+V S + +NL IA+ N EY E G+V +L +P ++SS
Sbjct: 90 KPE--IKVQNIVASADLGREVNLDAIAIGLPNAEYEPEQFPGLV-YRLDEPKVVLLLFSS 146
Query: 97 GKITCTGATSEDQSKIAARRYARCLQRL 124
GK+ TGA SE+ +K A + L+ L
Sbjct: 147 GKMVITGAKSEEDAKRAVEKLLSRLKEL 174
Score = 43.0 bits (102), Expect = 2e-05
Identities = 15/61 (24%), Positives = 31/61 (50%)
Query: 134 RVVNVLGTCSMPFAIRILQFSEKHRAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTA 193
++ N++ + + + + + + + AEY P+ PG+ YR+ PK IF +G + T
Sbjct: 3 KIENIVASVDLGQELDLEKVAAELPNAEYNPDQFPGLVYRLEDPKIAALIFRSGKMVCTG 62
Query: 194 C 194
Sbjct: 63 A 63
>gnl|CDD|222745 pfam14428, SCP1201-deam, SCP1.201-like deaminase. A member of the
nucleic acid/nucleotide deaminase superfamily prototyped
by Streptomyces SCP1.201. Members of this family are
predicted to function as toxins in bacterial polymorphic
toxin systems.
Length = 134
Score = 30.5 bits (69), Expect = 0.27
Identities = 6/24 (25%), Positives = 9/24 (37%)
Query: 41 EVDIIINNVVCSFSVRCHLNLRQI 64
++INN C C + I
Sbjct: 85 HAVLVINNGPCGDPDGCDQLVPAI 108
>gnl|CDD|221818 pfam12868, DUF3824, Domain of unknwon function (DUF3824). This is
a repeating domain found in fungal proteins. It is
proline-rich, and the function is not known.
Length = 135
Score = 28.7 bits (64), Expect = 1.1
Identities = 11/33 (33%), Positives = 13/33 (39%)
Query: 8 TTHSSHSEQEPPPTQTVVPIQNHAPPQPPAHDP 40
+ PPP V P QN+ P P DP
Sbjct: 91 PQPGYNPADYPPPPGAVPPPQNYPYPPGPGQDP 123
>gnl|CDD|177646 PHA03418, PHA03418, hypothetical E4 protein; Provisional.
Length = 230
Score = 29.3 bits (65), Expect = 1.1
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 15 EQEPPPTQTVVPIQNHAPPQPPAHDPE 41
E +PP + ++ H PP PPA +P+
Sbjct: 157 ESQPPLGEGEGAVEGHPPPLPPAPEPK 183
>gnl|CDD|237464 PRK13670, PRK13670, hypothetical protein; Provisional.
Length = 388
Score = 29.0 bits (66), Expect = 1.7
Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 5/52 (9%)
Query: 110 SKIAARRY--ARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKHRA 159
+ +RY R +QRL N +V T S+P IR+L F+EK +
Sbjct: 288 ELVKTKRYTYTR-IQRLLTYI-LLNATKEDVEKT-SLPPYIRVLGFTEKGQQ 336
>gnl|CDD|234764 PRK00442, tatA, twin arginine translocase protein A; Provisional.
Length = 92
Score = 27.1 bits (60), Expect = 2.3
Identities = 12/23 (52%), Positives = 14/23 (60%)
Query: 14 SEQEPPPTQTVVPIQNHAPPQPP 36
+EQ PP Q V P+QN AP P
Sbjct: 53 AEQPAPPAQPVPPVQNTAPLNQP 75
>gnl|CDD|143171 cd04970, Ig6_Contactin_like, Sixth Ig domain of contactin.
Ig6_Contactin_like: Sixth Ig domain of contactins.
Contactins are neural cell adhesion molecules and are
comprised of six Ig domains followed by four fibronectin
type III(FnIII) domains anchored to the membrane by
glycosylphosphatidylinositol. The first four Ig domains
form the intermolecular binding fragment, which arranges
as a compact U-shaped module via contacts between Ig
domains 1 and 4, and between Ig domains 2 and 3.
Contactin-2 (TAG-1, axonin-1) may play a part in the
neuronal processes of neurite outgrowth, axon guidance
and fasciculation, and neuronal migration. This group
also includes contactin-1 and contactin-5. The different
contactins show different expression patterns in the
central nervous system. During development and in
adulthood, contactin-2 is transiently expressed in
subsets of central and peripheral neurons. Contactin-5
is expressed specifically in the rat postnatal nervous
system, peaking at about 3 weeks postnatal, and a lack
of contactin-5 (NB-2) results in an impairment of neur
onal act ivity in the rat auditory system. Contactin-5
is highly expressed in the adult human brain in the
occipital lobe and in the amygdala. Contactin-1 is
differentially expressed in tumor tissues and may,
through a RhoA mechanism, facilitate invasion and
metastasis of human lung adenocarcinoma.
Length = 85
Score = 26.7 bits (59), Expect = 3.7
Identities = 21/81 (25%), Positives = 33/81 (40%), Gaps = 16/81 (19%)
Query: 37 AHDPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYRRENGMVT---MKLRKPYTTASI 93
+HDP +D+ +F+ N I + YRR G + + +R A +
Sbjct: 10 SHDPTLDL-------TFT--WSFNGVPIDFDKDGGHYRRVGGKDSNGDLMIR----NAQL 56
Query: 94 WSSGKITCTGATSEDQSKIAA 114
+GK TCT T D +A
Sbjct: 57 KHAGKYTCTAQTVVDSLSASA 77
>gnl|CDD|234606 PRK00061, ribH, 6,7-dimethyl-8-ribityllumazine synthase;
Provisional.
Length = 154
Score = 27.4 bits (62), Expect = 4.0
Identities = 14/41 (34%), Positives = 18/41 (43%), Gaps = 2/41 (4%)
Query: 119 RCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKHRA 159
L+R G N VV V G +P A + L S K+ A
Sbjct: 36 DALKRHGVSE--ENIDVVRVPGAFEIPLAAKKLAESGKYDA 74
>gnl|CDD|240406 PTZ00411, PTZ00411, transaldolase-like protein; Provisional.
Length = 333
Score = 27.4 bits (61), Expect = 5.3
Identities = 10/27 (37%), Positives = 13/27 (48%), Gaps = 1/27 (3%)
Query: 145 PFAIRILQ-FSEKHRAAEYEPELHPGV 170
PF RIL + + +A Y PGV
Sbjct: 187 PFVGRILDWYKKPEKAESYVGAQDPGV 213
>gnl|CDD|211550 TIGR00114, lumazine-synth, 6,7-dimethyl-8-ribityllumazine synthase.
This enzyme catalyzes the cyclo-ligation of
3,4-dihydroxy-2-butanone-4-P and
5-amino-6-ribitylamino-2,4(1H,3H)-pyrimidinedione to
form 6,7-dimethyl-8-ribityllumazine, the immediate
precursor of riboflavin. Sometimes referred to as
riboflavin synthase, beta subunit, this should not be
confused with the alpha subunit which carries out the
subsequent reaction. Archaeal members of this family are
considered putative, although included in the seed and
scoring above the trusted cutoff [Biosynthesis of
cofactors, prosthetic groups, and carriers, Riboflavin,
FMN, and FAD].
Length = 138
Score = 26.9 bits (60), Expect = 5.5
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Query: 120 CLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKHRA 159
L+RLG A N V+ V G +P A++ L S K+ A
Sbjct: 25 ALKRLG--AEVDNIDVIWVPGAFELPLAVKKLAESGKYDA 62
>gnl|CDD|219897 pfam08549, SWI-SNF_Ssr4, Fungal domain of unknown function
(DUF1750). This is a fungal domain of unknown function.
Length = 669
Score = 27.3 bits (60), Expect = 6.5
Identities = 13/38 (34%), Positives = 14/38 (36%), Gaps = 3/38 (7%)
Query: 1 MTTAGMTTTHSSHSEQEP-PPTQTVVPIQNHAPPQPPA 37
T G TT + S P Q A PQPPA
Sbjct: 509 FNTGG--TTFQTASTPAPNASGQATPTATGVASPQPPA 544
>gnl|CDD|219321 pfam07174, FAP, Fibronectin-attachment protein (FAP). This
family contains bacterial fibronectin-attachment
proteins (FAP). Family members are rich in alanine and
proline, are approximately 300 long, and seem to be
restricted to mycobacteria. These proteins contain a
fibronectin-binding motif that allows mycobacteria to
bind to fibronectin in the extracellular matrix.
Length = 297
Score = 26.8 bits (59), Expect = 8.5
Identities = 8/40 (20%), Positives = 15/40 (37%)
Query: 1 MTTAGMTTTHSSHSEQEPPPTQTVVPIQNHAPPQPPAHDP 40
+ + +++++ PPP AP PP P
Sbjct: 26 ASAVAIALPATANADPAPPPPPPSTAAAAPAPAAPPPPPP 65
>gnl|CDD|185335 PRK15438, PRK15438, erythronate-4-phosphate dehydrogenase PdxB;
Provisional.
Length = 378
Score = 26.8 bits (59), Expect = 9.0
Identities = 16/46 (34%), Positives = 20/46 (43%), Gaps = 11/46 (23%)
Query: 83 KLRKPYTTASIWSSGKITCTGATSEDQSKIAARRYARCLQRLGFKA 128
KLRK Y WSS + C A++ A L +LGF A
Sbjct: 338 KLRKNYLERREWSSLYVICDDASA-----------ASLLCKLGFNA 372
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.132 0.397
Gapped
Lambda K H
0.267 0.0681 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 10,215,713
Number of extensions: 917777
Number of successful extensions: 1045
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1018
Number of HSP's successfully gapped: 42
Length of query: 204
Length of database: 10,937,602
Length adjustment: 92
Effective length of query: 112
Effective length of database: 6,857,034
Effective search space: 767987808
Effective search space used: 767987808
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (25.8 bits)