RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy9199
(204 letters)
>1ais_A TBP, protein (tata-binding protein); hyperthermophIle, ribosome
binding, complex (ribosome binding/ DNA); HET: DNA 5IU;
2.10A {Pyrococcus woesei} SCOP: d.129.1.1 d.129.1.1 PDB:
1d3u_A* 1pcz_A
Length = 182
Score = 177 bits (451), Expect = 3e-57
Identities = 45/164 (27%), Positives = 73/164 (44%), Gaps = 2/164 (1%)
Query: 39 DPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYRREN-GMVTMKLRKPYTTASIWSSG 97
+V + I N+V S + L+L ++ N +Y E + L P I+SSG
Sbjct: 4 MSKVKLRIENIVASVDLFAQLDLEKVLDLCPNSKYNPEEFPGIICHLDDPKVALLIFSSG 63
Query: 98 KITCTGATSEDQSKIAARRYARCLQRLGFKA-RFTNFRVVNVLGTCSMPFAIRILQFSEK 156
K+ TGA S + A + A+ L+ +G K R V N++ + + + +
Sbjct: 64 KLVVTGAKSVQDIERAVAKLAQKLKSIGVKFKRAPQIDVQNMVFSGDIGREFNLDVVALT 123
Query: 157 HRAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
EYEPE PGV YR+ PK+ + +FS+G I +
Sbjct: 124 LPNCEYEPEQFPGVIYRVKEPKSVILLFSSGKIVCSGAKSEADA 167
Score = 67.3 bits (164), Expect = 2e-14
Identities = 28/86 (32%), Positives = 43/86 (50%), Gaps = 1/86 (1%)
Query: 39 DPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYRRENGM-VTMKLRKPYTTASIWSSG 97
I + N+V S + NL +AL N EY E V ++++P + ++SSG
Sbjct: 95 KRAPQIDVQNMVFSGDIGREFNLDVVALTLPNCEYEPEQFPGVIYRVKEPKSVILLFSSG 154
Query: 98 KITCTGATSEDQSKIAARRYARCLQR 123
KI C+GA SE + A R+ R L +
Sbjct: 155 KIVCSGAKSEADAWEAVRKLLRELDK 180
>3eik_A Tata-box-binding protein; DNA-binding, initiation factor, nucleus,
transcription; 1.90A {Encephalitozoon cuniculi} PDB:
3oci_A 3oc3_C
Length = 218
Score = 178 bits (453), Expect = 4e-57
Identities = 70/201 (34%), Positives = 110/201 (54%), Gaps = 5/201 (2%)
Query: 5 GMTTTHSSHSEQEPPPTQTVVP---IQNHAPPQPPAHDPEVDIIINNVVCSFSVRCHLNL 61
G + H HS P ++ I + + + NVV + ++ C L+L
Sbjct: 1 GSSHHHHHHSSGLVPRGSHMMDAPDISYEHQETSVPNRSGIIPTLQNVVATVNLSCKLDL 60
Query: 62 RQIALNGVNVEYRRE-NGMVTMKLRKPYTTASIWSSGKITCTGATSEDQSKIAARRYARC 120
+ IAL N EY + V M++R+P TTA I++SGK+ TGA SE S++AA+RYA+
Sbjct: 61 KNIALRARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVITGAKSEKSSRMAAQRYAKI 120
Query: 121 LQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKH-RAAEYEPELHPGVTYRITRPKA 179
+ +LGF A F +F++ N++ +C + F+IR+ + H YEPEL PG+ YR+ +PK
Sbjct: 121 IHKLGFNATFDDFKIQNIVSSCDIKFSIRLEGLAYAHSNYCSYEPELFPGLIYRMVKPKI 180
Query: 180 TLKIFSTGGITVTACNDSNKI 200
L IF +G I +T + I
Sbjct: 181 VLLIFVSGKIVLTGAKVRDDI 201
Score = 64.7 bits (157), Expect = 4e-13
Identities = 22/110 (20%), Positives = 39/110 (35%), Gaps = 1/110 (0%)
Query: 96 SGKITCTGATSEDQSKIAARRYARCLQRLGFKAR-FTNFRVVNVLGTCSMPFAIRILQFS 154
+G + A + Q R + NV+ T ++ + + +
Sbjct: 5 HHHHHSSGLVPRGSHMMDAPDISYEHQETSVPNRSGIIPTLQNVVATVNLSCKLDLKNIA 64
Query: 155 EKHRAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKIPVQI 204
+ R AEY P+ V RI PK T IF++G + +T +
Sbjct: 65 LRARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVITGAKSEKSSRMAA 114
Score = 59.0 bits (142), Expect = 4e-11
Identities = 21/78 (26%), Positives = 32/78 (41%), Gaps = 2/78 (2%)
Query: 38 HDPEVDIIINNVVCSFSVRCHLNLRQIAL-NGVNVEYRRENGM-VTMKLRKPYTTASIWS 95
+ D I N+V S ++ + L +A + Y E + ++ KP I+
Sbjct: 127 NATFDDFKIQNIVSSCDIKFSIRLEGLAYAHSNYCSYEPELFPGLIYRMVKPKIVLLIFV 186
Query: 96 SGKITCTGATSEDQSKIA 113
SGKI TGA D A
Sbjct: 187 SGKIVLTGAKVRDDIYQA 204
>1mp9_A Tata-binding protein; transcription regulation, DNA-binding
protein, transcription factor, DNA binding protein;
2.00A {Sulfolobus acidocaldarius} SCOP: d.129.1.1
d.129.1.1
Length = 198
Score = 177 bits (449), Expect = 1e-56
Identities = 42/168 (25%), Positives = 83/168 (49%), Gaps = 2/168 (1%)
Query: 35 PPAHDPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYRREN-GMVTMKLRKPYTTASI 93
P + + I N+V + ++ L+L + + NVEY + + +L P T+ I
Sbjct: 4 PDEIPYKAVVNIENIVATVTLDQTLDLYAMERSVPNVEYDPDQFPGLIFRLESPKITSLI 63
Query: 94 WSSGKITCTGATSEDQSKIAARRYARCLQRLGFKA-RFTNFRVVNVLGTCSMPFAIRILQ 152
+ SGK+ TGA S D+ A +R + L++ G + ++ N++ + ++ + + +
Sbjct: 64 FKSGKMVVTGAKSTDELIKAVKRIIKTLKKYGMQLTGKPKIQIQNIVASANLHVIVNLDK 123
Query: 153 FSEKHRAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
+ YEPE PG+ YR+ P+ L IFS+G + +T +++
Sbjct: 124 AAFLLENNMYEPEQFPGLIYRMDEPRVVLLIFSSGKMVITGAKREDEV 171
Score = 66.6 bits (162), Expect = 5e-14
Identities = 25/88 (28%), Positives = 40/88 (45%), Gaps = 1/88 (1%)
Query: 39 DPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYRRENGM-VTMKLRKPYTTASIWSSG 97
+ I I N+V S ++ +NL + A N Y E + ++ +P I+SSG
Sbjct: 99 TGKPKIQIQNIVASANLHVIVNLDKAAFLLENNMYEPEQFPGLIYRMDEPRVVLLIFSSG 158
Query: 98 KITCTGATSEDQSKIAARRYARCLQRLG 125
K+ TGA ED+ A ++ L L
Sbjct: 159 KMVITGAKREDEVHKAVKKIFDKLVELD 186
Score = 62.7 bits (152), Expect = 2e-12
Identities = 16/72 (22%), Positives = 35/72 (48%)
Query: 133 FRVVNVLGTCSMPFAIRILQFSEKHRAAEYEPELHPGVTYRITRPKATLKIFSTGGITVT 192
+ N++ T ++ + + EY+P+ PG+ +R+ PK T IF +G + VT
Sbjct: 13 VNIENIVATVTLDQTLDLYAMERSVPNVEYDPDQFPGLIFRLESPKITSLIFKSGKMVVT 72
Query: 193 ACNDSNKIPVQI 204
++++ +
Sbjct: 73 GAKSTDELIKAV 84
>2z8u_A Tata-box-binding protein; transcription, DNA-binding protein,
transcription factor, transcription regulation; 1.90A
{Methanococcus jannaschii}
Length = 188
Score = 171 bits (435), Expect = 9e-55
Identities = 46/165 (27%), Positives = 80/165 (48%), Gaps = 2/165 (1%)
Query: 38 HDPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYRREN-GMVTMKLRKPYTTASIWSS 96
H E +I I NVV S + +++L ++A+ N EY E + +L P I+ S
Sbjct: 7 HPMEPEIKIVNVVVSTKIGDNIDLEEVAMILENAEYEPEQFPGLVCRLSVPKVALLIFRS 66
Query: 97 GKITCTGATSEDQSKIAARRYARCLQRLGFK-ARFTNFRVVNVLGTCSMPFAIRILQFSE 155
GK+ CTGA S+++++IA ++ + L+ G ++ N++ T + + +
Sbjct: 67 GKVNCTGAKSKEEAEIAIKKIIKELKDAGIDVIENPEIKIQNMVATADLGIEPNLDDIAL 126
Query: 156 KHRAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
EYEPE PG+ YR+ PK + IF +G + +T
Sbjct: 127 MVEGTEYEPEQFPGLVYRLDDPKVVVLIFGSGKVVITGLKSEEDA 171
Score = 67.0 bits (163), Expect = 3e-14
Identities = 24/88 (27%), Positives = 39/88 (44%), Gaps = 1/88 (1%)
Query: 38 HDPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYRRENGM-VTMKLRKPYTTASIWSS 96
+I I N+V + + NL IAL EY E + +L P I+ S
Sbjct: 98 VIENPEIKIQNMVATADLGIEPNLDDIALMVEGTEYEPEQFPGLVYRLDDPKVVVLIFGS 157
Query: 97 GKITCTGATSEDQSKIAARRYARCLQRL 124
GK+ TG SE+ +K A ++ ++ +
Sbjct: 158 GKVVITGLKSEEDAKRALKKILDTIKEV 185
>1rm1_A Tata-box binding protein; yeast TFIIA, TBP protein, ATA-box DNA,
transcription/DNA complex; 2.50A {Saccharomyces
cerevisiae} SCOP: d.129.1.1 d.129.1.1
Length = 240
Score = 170 bits (431), Expect = 2e-53
Identities = 66/185 (35%), Positives = 111/185 (60%), Gaps = 2/185 (1%)
Query: 18 PPPTQTVVPIQNHAPPQPPAHDPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYR-RE 76
++ + + + + + N+V + ++ C L+L+ +AL+ N EY +
Sbjct: 39 TFQSEEDIKRAAPESEKDTSATSGIVPTLQNIVATVTLGCRLDLKTVALHARNAEYNPKR 98
Query: 77 NGMVTMKLRKPYTTASIWSSGKITCTGATSEDQSKIAARRYARCLQRLGFKARFTNFRVV 136
V M++R+P TTA I++SGK+ TGA SED SK+A+R+YAR +Q++GF A+FT+F++
Sbjct: 99 FAAVIMRIREPKTTALIFASGKMVVTGAKSEDDSKLASRKYARIIQKIGFAAKFTDFKIQ 158
Query: 137 NVLGTCSMPFAIRILQFSEKHRA-AEYEPELHPGVTYRITRPKATLKIFSTGGITVTACN 195
N++G+C + F IR+ + H + YEPEL PG+ YR+ +PK L IF +G I +T
Sbjct: 159 NIVGSCDVKFPIRLEGLAFSHGTFSSYEPELFPGLIYRMVKPKIVLLIFVSGKIVLTGAK 218
Query: 196 DSNKI 200
+I
Sbjct: 219 QREEI 223
Score = 80.5 bits (198), Expect = 7e-19
Identities = 26/129 (20%), Positives = 44/129 (34%), Gaps = 4/129 (3%)
Query: 76 ENGMVTMKLRKPYTTASIWSSGKITCTGATSEDQSKIAARRYARCLQRLGFKARFTNFRV 135
E + + G T SE+ K AA + +
Sbjct: 12 EANKIVFDPNTRQVWENQNRDGTKPATTFQSEEDIKRAAPESEKDTS----ATSGIVPTL 67
Query: 136 VNVLGTCSMPFAIRILQFSEKHRAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTACN 195
N++ T ++ + + + R AEY P+ V RI PK T IF++G + VT
Sbjct: 68 QNIVATVTLGCRLDLKTVALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGAK 127
Query: 196 DSNKIPVQI 204
+ +
Sbjct: 128 SEDDSKLAS 136
Score = 60.5 bits (146), Expect = 2e-11
Identities = 23/84 (27%), Positives = 34/84 (40%), Gaps = 2/84 (2%)
Query: 43 DIIINNVVCSFSVRCHLNLRQIAL-NGVNVEYRRENGM-VTMKLRKPYTTASIWSSGKIT 100
D I N+V S V+ + L +A +G Y E + ++ KP I+ SGKI
Sbjct: 154 DFKIQNIVGSCDVKFPIRLEGLAFSHGTFSSYEPELFPGLIYRMVKPKIVLLIFVSGKIV 213
Query: 101 CTGATSEDQSKIAARRYARCLQRL 124
TGA ++ A L
Sbjct: 214 LTGAKQREEIYQAFEAIYPVLSEF 237
>1ytb_A Protein (tata binding protein (TBP)); protein-DNA complex,
transcription/DNA complex; HET: DNA; 1.80A
{Saccharomyces cerevisiae} SCOP: d.129.1.1 d.129.1.1
PDB: 1ngm_A* 1tba_B 1nh2_A* 1ytf_A* 1tbp_A 1qna_A*
1qn3_A* 1qn5_A* 1qn6_A* 1qn7_A* 1qn8_A* 1qn9_A* 1qn4_A*
1qnb_A* 1qnc_A* 1qne_A* 1vok_A 1vol_B* 1vto_A* 1vtl_E*
...
Length = 180
Score = 162 bits (412), Expect = 2e-51
Identities = 66/161 (40%), Positives = 106/161 (65%), Gaps = 2/161 (1%)
Query: 42 VDIIINNVVCSFSVRCHLNLRQIALNGVNVEYRRE-NGMVTMKLRKPYTTASIWSSGKIT 100
+ + N+V + ++ C L+L+ +AL+ N EY + V M++R+P TTA I++SGK+
Sbjct: 3 IVPTLQNIVATVTLGCRLDLKTVALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMV 62
Query: 101 CTGATSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKHRA- 159
TGA SED SK+A+R+YAR +Q++GF A+FT+F++ N++G+C + F IR+ + H
Sbjct: 63 VTGAKSEDDSKLASRKYARIIQKIGFAAKFTDFKIQNIVGSCDVKFPIRLEGLAFSHGTF 122
Query: 160 AEYEPELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
+ YEPEL PG+ YR+ +PK L IF +G I +T +I
Sbjct: 123 SSYEPELFPGLIYRMVKPKIVLLIFVSGKIVLTGAKQREEI 163
Score = 62.7 bits (152), Expect = 9e-13
Identities = 18/71 (25%), Positives = 32/71 (45%)
Query: 134 RVVNVLGTCSMPFAIRILQFSEKHRAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTA 193
+ N++ T ++ + + + R AEY P+ V RI PK T IF++G + VT
Sbjct: 6 TLQNIVATVTLGCRLDLKTVALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTG 65
Query: 194 CNDSNKIPVQI 204
+ +
Sbjct: 66 AKSEDDSKLAS 76
Score = 59.6 bits (144), Expect = 2e-11
Identities = 23/87 (26%), Positives = 34/87 (39%), Gaps = 2/87 (2%)
Query: 40 PEVDIIINNVVCSFSVRCHLNLRQIAL-NGVNVEYRRENGM-VTMKLRKPYTTASIWSSG 97
D I N+V S V+ + L +A +G Y E + ++ KP I+ SG
Sbjct: 91 KFTDFKIQNIVGSCDVKFPIRLEGLAFSHGTFSSYEPELFPGLIYRMVKPKIVLLIFVSG 150
Query: 98 KITCTGATSEDQSKIAARRYARCLQRL 124
KI TGA ++ A L
Sbjct: 151 KIVLTGAKQREEIYQAFEAIYPVLSEF 177
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 34.3 bits (78), Expect = 0.029
Identities = 31/174 (17%), Positives = 57/174 (32%), Gaps = 48/174 (27%)
Query: 55 VRCHLNLRQIALNGVNVEYRRENG------MVTMK-LRKPYTTASIWSSGKITCTGATSE 107
VRC+ +L +E EN M+++ L + + T + +
Sbjct: 308 VRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYV----NKTNSHLPAG 363
Query: 108 DQSKIA---ARR------YARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKHR 158
Q +I+ + + L L R + + L +PF+ R L+FS +R
Sbjct: 364 KQVEISLVNGAKNLVVSGPPQSLYGLNLTLR--KAKAPSGLDQSRIPFSERKLKFS--NR 419
Query: 159 AAEYEPELHPGVTYRITRP-------KATLKI---FSTGGITVTACNDSNKIPV 202
+ P + P A+ I ++ A +IPV
Sbjct: 420 ---FLP---------VASPFHSHLLVPASDLINKDLVKNNVSFNA--KDIQIPV 459
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 33.3 bits (75), Expect = 0.055
Identities = 28/254 (11%), Positives = 67/254 (26%), Gaps = 92/254 (36%)
Query: 13 HSEQEPPPTQTVV------PIQNHAPPQPPAH-----------------DPEVDIII--- 46
+EQ P T + + N + P +++I
Sbjct: 99 KTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGV 158
Query: 47 ---------NNVVCSFSVRCHLNLRQIALNGV---NV-EYRRENGMVTM------KLRKP 87
+V S+ V+C ++ + N+ ++ M ++
Sbjct: 159 LGSGKTWVALDVCLSYKVQCKMD------FKIFWLNLKNCNSPETVLEMLQKLLYQIDPN 212
Query: 88 YTT-ASIWSSGKITCTGATSEDQSKIAARRYARCL------------QRLGFKAR--FT- 131
+T+ + S+ K+ +E + + ++ Y CL + T
Sbjct: 213 WTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTT 272
Query: 132 -NFRVVNVLGTCSMPFAIRILQFSEKHRAAEYEPELHPGVTYRITRPKATLKIFSTGGIT 190
+V + L + H + + +T P +
Sbjct: 273 RFKQVTDFLSA-----------ATTTHISLD---HHSMTLT-----PDEVKSLLL----K 309
Query: 191 VTACNDSNKIPVQI 204
C +P ++
Sbjct: 310 YLDC-RPQDLPREV 322
Score = 30.6 bits (68), Expect = 0.40
Identities = 25/172 (14%), Positives = 55/172 (31%), Gaps = 55/172 (31%)
Query: 44 IIINNV-----VCSFSVRCHLNL---RQIAL-NGVNVEYRRENGMVTMKLRKPYT---TA 91
+++ NV +F++ C + L R + + ++ + T
Sbjct: 248 LVLLNVQNAKAWNAFNLSCKI-LLTTRFKQVTDFLSAATTTHISLD--HHSMTLTPDEVK 304
Query: 92 SIWSSGKITCTGATSED---Q---------SKIAARRYARCLQRLGFKARFTNFRVVNV- 138
S+ +D + S IA ++ A + N++ VN
Sbjct: 305 SLLLK----YLDCRPQDLPREVLTTNPRRLSIIAES-----IRD--GLATWDNWKHVNCD 353
Query: 139 -LGTCSMPFAIRILQFSEKHRAAEYE-----PELHPGVTYRITRPKATLKIF 184
L T + ++ +L+ +E +R ++ P I P L +
Sbjct: 354 KLTT-IIESSLNVLEPAE-YRKM-FDRLSVFPP---SA--HI--PTILLSLI 395
Score = 29.8 bits (66), Expect = 0.69
Identities = 8/38 (21%), Positives = 19/38 (50%), Gaps = 9/38 (23%)
Query: 38 HDPEVDIIINNVVCSFSVRC--------HLNLRQIALN 67
+DP+ + ++N ++ F + + +L +IAL
Sbjct: 537 NDPKYERLVNAIL-DFLPKIEENLICSKYTDLLRIALM 573
>3vln_A GSTO-1, glutathione S-transferase omega-1; GST fold, reductase;
HET: ASC; 1.70A {Homo sapiens} PDB: 1eem_A* 3lfl_A*
Length = 241
Score = 30.0 bits (68), Expect = 0.44
Identities = 9/53 (16%), Positives = 17/53 (32%), Gaps = 8/53 (15%)
Query: 27 IQNHAPPQPPAHDPEVDIIINNVVCSFSVRCHLNLRQIALN--GVNVEYRREN 77
+ + P P + + I + F+ R + L G+ E N
Sbjct: 9 LGKGSAPPGPVPEGSI-RIYSMRFSPFAERTR-----LVLKAKGIRHEVININ 55
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 26.5 bits (57), Expect = 4.3
Identities = 12/36 (33%), Positives = 17/36 (47%), Gaps = 9/36 (25%)
Query: 147 AIRILQFSEKHRAAEYEPELHPGVTYRITRPKATLK 182
A++ LQ S K A + P L I KAT++
Sbjct: 21 ALKKLQASLKLYADDSAPAL------AI---KATME 47
Score = 26.5 bits (57), Expect = 4.5
Identities = 6/33 (18%), Positives = 11/33 (33%), Gaps = 10/33 (30%)
Query: 22 QTVVPIQN----HAPPQPPAHDPEVDIIINNVV 50
Q + +Q +A PA + I +
Sbjct: 20 QALKKLQASLKLYADDSAPA------LAIKATM 46
>2qv5_A AGR_C_5032P, uncharacterized protein ATU2773; structural
genomics, unknown function, PSI-2, protein struct
initiative; 1.90A {Agrobacterium tumefaciens str}
Length = 261
Score = 26.5 bits (58), Expect = 6.7
Identities = 6/28 (21%), Positives = 12/28 (42%)
Query: 19 PPTQTVVPIQNHAPPQPPAHDPEVDIII 46
+ P++ +A P A V I++
Sbjct: 9 VGADGLRPMEQYARPWSGARGTRVAIVV 36
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.132 0.397
Gapped
Lambda K H
0.267 0.0538 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,158,532
Number of extensions: 181858
Number of successful extensions: 479
Number of sequences better than 10.0: 1
Number of HSP's gapped: 457
Number of HSP's successfully gapped: 25
Length of query: 204
Length of database: 6,701,793
Length adjustment: 89
Effective length of query: 115
Effective length of database: 4,216,824
Effective search space: 484934760
Effective search space used: 484934760
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.4 bits)