RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy9199
(204 letters)
>d1qnaa1 d.129.1.1 (A:17-115) TATA-box binding protein (TBP),
C-terminal domain {Thale cress (Arabidopsis thaliana)
[TaxId: 3702]}
Length = 99
Score = 119 bits (301), Expect = 6e-36
Identities = 45/99 (45%), Positives = 68/99 (68%), Gaps = 1/99 (1%)
Query: 38 HDPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYRRE-NGMVTMKLRKPYTTASIWSS 96
H + + N+V + ++ C L+L+ IAL N EY + V M++R+P TTA I++S
Sbjct: 1 HPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIREPKTTALIFAS 60
Query: 97 GKITCTGATSEDQSKIAARRYARCLQRLGFKARFTNFRV 135
GK+ CTGA SED SK+AAR+YAR +Q+LGF A+F +F++
Sbjct: 61 GKMVCTGAKSEDFSKMAARKYARIVQKLGFPAKFKDFKI 99
Score = 72.9 bits (179), Expect = 9e-18
Identities = 17/66 (25%), Positives = 31/66 (46%)
Query: 135 VVNVLGTCSMPFAIRILQFSEKHRAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTAC 194
+ N++ T ++ + + + + R AEY P+ V RI PK T IF++G + T
Sbjct: 9 LQNIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVCTGA 68
Query: 195 NDSNKI 200
+
Sbjct: 69 KSEDFS 74
>d1aisa1 d.129.1.1 (A:1-92) TATA-box binding protein (TBP),
C-terminal domain {Archaeon Pyrococcus woesei [TaxId:
2262]}
Length = 92
Score = 105 bits (264), Expect = 2e-30
Identities = 25/87 (28%), Positives = 41/87 (47%), Gaps = 1/87 (1%)
Query: 40 PEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYRRE-NGMVTMKLRKPYTTASIWSSGK 98
+V + I N+V S + L+L ++ N +Y E + L P I+SSGK
Sbjct: 5 SKVKLRIENIVASVDLFAQLDLEKVLDLCPNSKYNPEEFPGIICHLDDPKVALLIFSSGK 64
Query: 99 ITCTGATSEDQSKIAARRYARCLQRLG 125
+ TGA S + A + A+ L+ +G
Sbjct: 65 LVVTGAKSVQDIERAVAKLAQKLKSIG 91
Score = 79.7 bits (197), Expect = 2e-20
Identities = 16/63 (25%), Positives = 31/63 (49%)
Query: 132 NFRVVNVLGTCSMPFAIRILQFSEKHRAAEYEPELHPGVTYRITRPKATLKIFSTGGITV 191
R+ N++ + + + + + + ++Y PE PG+ + PK L IFS+G + V
Sbjct: 8 KLRIENIVASVDLFAQLDLEKVLDLCPNSKYNPEEFPGIICHLDDPKVALLIFSSGKLVV 67
Query: 192 TAC 194
T
Sbjct: 68 TGA 70
>d1mp9a1 d.129.1.1 (A:5-96) TATA-box binding protein (TBP),
C-terminal domain {Archaeon Sulfolobus acidocaldarius
[TaxId: 2285]}
Length = 92
Score = 104 bits (260), Expect = 7e-30
Identities = 25/88 (28%), Positives = 45/88 (51%), Gaps = 1/88 (1%)
Query: 39 DPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYRREN-GMVTMKLRKPYTTASIWSSG 97
+ + I N+V + ++ L+L + + NVEY + + +L P T+ I+ SG
Sbjct: 4 PYKAVVNIENIVATVTLDQTLDLYAMERSVPNVEYDPDQFPGLIFRLESPKITSLIFKSG 63
Query: 98 KITCTGATSEDQSKIAARRYARCLQRLG 125
K+ TGA S D+ A +R + L++ G
Sbjct: 64 KMVVTGAKSTDELIKAVKRIIKTLKKYG 91
Score = 78.6 bits (194), Expect = 4e-20
Identities = 16/69 (23%), Positives = 34/69 (49%)
Query: 132 NFRVVNVLGTCSMPFAIRILQFSEKHRAAEYEPELHPGVTYRITRPKATLKIFSTGGITV 191
+ N++ T ++ + + EY+P+ PG+ +R+ PK T IF +G + V
Sbjct: 8 VVNIENIVATVTLDQTLDLYAMERSVPNVEYDPDQFPGLIFRLESPKITSLIFKSGKMVV 67
Query: 192 TACNDSNKI 200
T ++++
Sbjct: 68 TGAKSTDEL 76
>d1mp9a2 d.129.1.1 (A:97-197) TATA-box binding protein (TBP),
C-terminal domain {Archaeon Sulfolobus acidocaldarius
[TaxId: 2285]}
Length = 101
Score = 100 bits (251), Expect = 2e-28
Identities = 25/86 (29%), Positives = 40/86 (46%), Gaps = 1/86 (1%)
Query: 41 EVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYRRE-NGMVTMKLRKPYTTASIWSSGKI 99
+ I I N+V S ++ +NL + A N Y E + ++ +P I+SSGK+
Sbjct: 5 KPKIQIQNIVASANLHVIVNLDKAAFLLENNMYEPEQFPGLIYRMDEPRVVLLIFSSGKM 64
Query: 100 TCTGATSEDQSKIAARRYARCLQRLG 125
TGA ED+ A ++ L L
Sbjct: 65 VITGAKREDEVHKAVKKIFDKLVELD 90
Score = 77.1 bits (190), Expect = 2e-19
Identities = 16/68 (23%), Positives = 36/68 (52%)
Query: 133 FRVVNVLGTCSMPFAIRILQFSEKHRAAEYEPELHPGVTYRITRPKATLKIFSTGGITVT 192
++ N++ + ++ + + + + YEPE PG+ YR+ P+ L IFS+G + +T
Sbjct: 8 IQIQNIVASANLHVIVNLDKAAFLLENNMYEPEQFPGLIYRMDEPRVVLLIFSSGKMVIT 67
Query: 193 ACNDSNKI 200
+++
Sbjct: 68 GAKREDEV 75
>d1aisa2 d.129.1.1 (A:93-181) TATA-box binding protein (TBP),
C-terminal domain {Archaeon Pyrococcus woesei [TaxId:
2262]}
Length = 89
Score = 99.0 bits (247), Expect = 6e-28
Identities = 28/85 (32%), Positives = 43/85 (50%), Gaps = 1/85 (1%)
Query: 40 PEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYRREN-GMVTMKLRKPYTTASIWSSGK 98
I + N+V S + NL +AL N EY E V ++++P + ++SSGK
Sbjct: 4 RAPQIDVQNMVFSGDIGREFNLDVVALTLPNCEYEPEQFPGVIYRVKEPKSVILLFSSGK 63
Query: 99 ITCTGATSEDQSKIAARRYARCLQR 123
I C+GA SE + A R+ R L +
Sbjct: 64 IVCSGAKSEADAWEAVRKLLRELDK 88
Score = 75.9 bits (187), Expect = 4e-19
Identities = 18/68 (26%), Positives = 30/68 (44%)
Query: 133 FRVVNVLGTCSMPFAIRILQFSEKHRAAEYEPELHPGVTYRITRPKATLKIFSTGGITVT 192
V N++ + + + + EYEPE PGV YR+ PK+ + +FS+G I +
Sbjct: 8 IDVQNMVFSGDIGREFNLDVVALTLPNCEYEPEQFPGVIYRVKEPKSVILLFSSGKIVCS 67
Query: 193 ACNDSNKI 200
Sbjct: 68 GAKSEADA 75
>d1qnaa2 d.129.1.1 (A:116-198) TATA-box binding protein (TBP),
C-terminal domain {Thale cress (Arabidopsis thaliana)
[TaxId: 3702]}
Length = 83
Score = 79.0 bits (195), Expect = 3e-20
Identities = 20/79 (25%), Positives = 32/79 (40%), Gaps = 2/79 (2%)
Query: 48 NVVCSFSVRCHLNLRQIAL-NGVNVEYRRENGM-VTMKLRKPYTTASIWSSGKITCTGAT 105
N+V S V+ + L +A + Y E + +++ P I+ SGKI TGA
Sbjct: 2 NIVGSCDVKFPIRLEGLAYSHAAFSSYEPELFPGLIYRMKVPKIVLLIFVSGKIVITGAK 61
Query: 106 SEDQSKIAARRYARCLQRL 124
D++ A L
Sbjct: 62 MRDETYKAFENIYPVLSEF 80
Score = 67.4 bits (165), Expect = 8e-16
Identities = 25/65 (38%), Positives = 38/65 (58%), Gaps = 1/65 (1%)
Query: 137 NVLGTCSMPFAIRILQFSEKHRA-AEYEPELHPGVTYRITRPKATLKIFSTGGITVTACN 195
N++G+C + F IR+ + H A + YEPEL PG+ YR+ PK L IF +G I +T
Sbjct: 2 NIVGSCDVKFPIRLEGLAYSHAAFSSYEPELFPGLIYRMKVPKIVLLIFVSGKIVITGAK 61
Query: 196 DSNKI 200
++
Sbjct: 62 MRDET 66
>d1m8ta_ a.133.1.2 (A:) Snake phospholipase A2 {King cobra
(Ophiophagus hannah), an acidic isoform [TaxId: 8665]}
Length = 119
Score = 24.5 bits (53), Expect = 6.6
Identities = 10/51 (19%), Positives = 16/51 (31%), Gaps = 4/51 (7%)
Query: 87 PYTTASIWS--SGKITCTGATSEDQSKIAA--RRYARCLQRLGFKARFTNF 133
PY+ + G +TC E + + R A C + N
Sbjct: 63 PYSKRYSYDCSEGTLTCKADNDECAAFVCDCDRVAAICFAGAPYNKENINI 113
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.132 0.397
Gapped
Lambda K H
0.267 0.0663 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 770,463
Number of extensions: 35308
Number of successful extensions: 78
Number of sequences better than 10.0: 1
Number of HSP's gapped: 71
Number of HSP's successfully gapped: 15
Length of query: 204
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 123
Effective length of database: 1,295,466
Effective search space: 159342318
Effective search space used: 159342318
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (23.6 bits)