Query psy92
Match_columns 638
No_of_seqs 226 out of 633
Neff 7.1
Searched_HMMs 46136
Date Fri Aug 16 21:26:12 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy92.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/92hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1896|consensus 100.0 2E-107 3E-112 917.4 48.5 573 15-638 778-1366(1366)
2 KOG1897|consensus 100.0 3.6E-80 7.9E-85 687.0 50.5 512 11-634 577-1095(1096)
3 COG5161 SFT1 Pre-mRNA cleavage 100.0 1.8E-73 3.9E-78 621.3 43.7 556 14-632 752-1313(1319)
4 KOG1898|consensus 100.0 1.7E-64 3.6E-69 563.9 39.9 539 12-635 630-1204(1205)
5 PF03178 CPSF_A: CPSF A subuni 100.0 1.6E-56 3.5E-61 474.9 35.6 317 231-604 1-321 (321)
6 KOG0318|consensus 97.6 0.052 1.1E-06 59.7 27.2 124 275-419 454-582 (603)
7 cd00200 WD40 WD40 domain, foun 97.2 0.24 5.3E-06 48.7 29.8 98 276-395 147-249 (289)
8 PF03178 CPSF_A: CPSF A subuni 97.2 0.082 1.8E-06 56.2 22.6 157 325-546 21-202 (321)
9 PRK11028 6-phosphogluconolacto 97.1 0.48 1E-05 50.3 33.2 128 337-511 186-327 (330)
10 cd00200 WD40 WD40 domain, foun 97.0 0.38 8.2E-06 47.3 29.2 98 276-395 105-207 (289)
11 KOG1539|consensus 96.9 1.4 3.1E-05 51.2 29.7 187 99-360 87-281 (910)
12 KOG1036|consensus 96.5 0.44 9.5E-06 49.6 20.0 96 276-395 65-163 (323)
13 KOG0291|consensus 96.4 2.7 5.9E-05 48.6 34.4 248 141-419 64-359 (893)
14 KOG1539|consensus 96.3 0.41 8.9E-06 55.5 20.7 78 316-396 64-143 (910)
15 PLN00181 protein SPA1-RELATED; 96.2 1.5 3.3E-05 52.6 26.4 130 233-394 599-737 (793)
16 KOG1273|consensus 96.1 0.34 7.3E-06 50.6 16.9 154 276-504 35-195 (405)
17 KOG1274|consensus 96.1 0.58 1.3E-05 54.8 20.3 122 127-304 138-263 (933)
18 KOG2110|consensus 95.6 1.1 2.4E-05 47.7 18.7 220 233-508 107-352 (391)
19 KOG0650|consensus 95.6 0.51 1.1E-05 53.0 16.7 210 150-395 420-637 (733)
20 KOG1446|consensus 95.2 4.9 0.00011 42.1 23.4 179 143-358 113-307 (311)
21 PTZ00420 coronin; Provisional 94.0 6.2 0.00014 45.5 21.0 158 293-513 146-316 (568)
22 KOG0318|consensus 94.0 4 8.6E-05 45.5 18.2 21 275-304 498-518 (603)
23 PRK11028 6-phosphogluconolacto 93.9 10 0.00022 40.1 32.0 49 145-196 3-53 (330)
24 KOG0283|consensus 93.9 1.6 3.4E-05 50.8 15.6 138 232-396 432-577 (712)
25 KOG0278|consensus 93.4 2.6 5.7E-05 42.9 14.5 92 230-354 203-297 (334)
26 KOG1897|consensus 93.4 6.7 0.00015 46.9 19.7 163 316-544 758-940 (1096)
27 KOG0306|consensus 93.4 20 0.00043 41.9 26.5 149 232-418 394-558 (888)
28 KOG0296|consensus 93.3 5.4 0.00012 42.6 17.1 100 254-381 282-384 (399)
29 PF08596 Lgl_C: Lethal giant l 93.2 2.4 5.2E-05 46.7 15.4 116 232-363 107-252 (395)
30 KOG0646|consensus 92.9 1.5 3.3E-05 47.9 12.8 70 294-377 60-133 (476)
31 PLN00181 protein SPA1-RELATED; 92.7 28 0.00061 41.9 33.5 131 232-395 555-690 (793)
32 PF14727 PHTB1_N: PTHB1 N-term 92.6 20 0.00043 39.8 24.0 190 259-515 23-250 (418)
33 KOG0263|consensus 92.6 4.1 8.8E-05 47.2 16.3 175 106-354 462-649 (707)
34 KOG2106|consensus 92.6 21 0.00045 40.0 25.6 182 172-419 402-605 (626)
35 KOG3881|consensus 92.3 2.3 4.9E-05 45.7 13.0 133 326-509 104-252 (412)
36 KOG2111|consensus 92.3 17 0.00037 38.4 25.4 205 146-419 20-235 (346)
37 KOG0283|consensus 91.9 5 0.00011 46.8 16.0 94 233-360 391-487 (712)
38 KOG0647|consensus 91.7 10 0.00022 39.8 16.5 92 293-399 92-188 (347)
39 KOG0289|consensus 91.5 19 0.00042 39.5 18.8 99 232-362 369-470 (506)
40 KOG0282|consensus 91.0 6.2 0.00013 43.6 14.8 187 140-396 268-463 (503)
41 KOG0646|consensus 90.9 18 0.0004 39.8 18.1 106 276-394 135-246 (476)
42 KOG1273|consensus 90.6 14 0.00031 38.9 16.3 171 168-360 97-286 (405)
43 KOG0266|consensus 90.6 33 0.00072 38.4 21.9 113 293-418 223-342 (456)
44 KOG2321|consensus 90.5 5.4 0.00012 45.0 13.9 56 338-393 147-203 (703)
45 KOG2096|consensus 90.2 9.7 0.00021 40.2 14.7 65 129-197 88-152 (420)
46 KOG0276|consensus 89.9 15 0.00033 42.0 16.9 151 232-419 35-192 (794)
47 PF14783 BBS2_Mid: Ciliary BBS 89.8 3.7 8.1E-05 36.8 10.0 67 258-353 2-70 (111)
48 KOG1034|consensus 89.7 5.7 0.00012 42.0 12.6 100 275-395 104-211 (385)
49 KOG0305|consensus 89.7 27 0.00058 39.4 18.9 98 276-396 313-420 (484)
50 PTZ00420 coronin; Provisional 89.0 29 0.00062 40.2 19.1 148 150-361 146-300 (568)
51 PTZ00421 coronin; Provisional 88.7 49 0.0011 37.6 20.9 62 276-358 138-202 (493)
52 COG2706 3-carboxymuconate cycl 88.1 41 0.00089 36.1 29.2 102 295-407 167-286 (346)
53 KOG4378|consensus 88.1 21 0.00045 39.9 16.0 92 293-395 185-280 (673)
54 KOG2111|consensus 88.1 22 0.00048 37.6 15.5 50 294-356 74-123 (346)
55 KOG0282|consensus 87.9 3 6.6E-05 45.9 9.7 91 232-356 280-374 (503)
56 KOG0299|consensus 87.6 4.2 9.1E-05 44.6 10.4 92 276-383 338-443 (479)
57 PF10282 Lactonase: Lactonase, 87.3 45 0.00098 35.7 33.7 104 294-406 165-286 (345)
58 KOG3881|consensus 87.3 1.7 3.7E-05 46.6 7.2 102 232-364 226-330 (412)
59 KOG0315|consensus 87.2 38 0.00083 34.8 26.4 123 275-419 135-267 (311)
60 KOG0647|consensus 87.0 16 0.00035 38.3 13.8 113 293-419 48-165 (347)
61 KOG0315|consensus 86.7 21 0.00045 36.7 14.0 40 328-367 41-82 (311)
62 KOG1517|consensus 86.4 91 0.002 38.3 22.7 190 255-513 1109-1314(1387)
63 KOG0306|consensus 85.9 80 0.0017 37.2 21.1 118 296-419 477-601 (888)
64 KOG2919|consensus 85.6 49 0.0011 35.2 16.5 137 233-392 134-287 (406)
65 PF10282 Lactonase: Lactonase, 84.8 60 0.0013 34.8 26.2 117 293-418 212-345 (345)
66 KOG0290|consensus 84.3 15 0.00033 38.3 12.1 128 275-419 58-205 (364)
67 KOG0649|consensus 84.2 2.3 5E-05 43.1 6.0 70 274-354 20-89 (325)
68 KOG2110|consensus 84.1 67 0.0014 34.7 17.6 77 321-397 81-161 (391)
69 KOG0275|consensus 83.8 9.6 0.00021 40.1 10.4 84 249-357 207-296 (508)
70 KOG0772|consensus 83.1 73 0.0016 35.9 17.3 91 293-394 289-393 (641)
71 PF14761 HPS3_N: Hermansky-Pud 82.9 5.7 0.00012 39.8 8.2 62 325-386 132-206 (215)
72 PF15390 DUF4613: Domain of un 82.6 8.2 0.00018 43.9 10.1 60 324-383 152-219 (671)
73 KOG0278|consensus 82.5 22 0.00047 36.5 12.0 133 293-486 163-301 (334)
74 KOG0285|consensus 82.2 65 0.0014 34.8 15.9 61 276-355 371-440 (460)
75 KOG2106|consensus 81.7 39 0.00084 37.9 14.5 99 318-419 398-500 (626)
76 KOG1898|consensus 81.3 98 0.0021 37.9 18.5 92 296-397 955-1050(1205)
77 KOG0277|consensus 81.1 4.3 9.3E-05 41.5 6.6 67 276-354 21-91 (311)
78 KOG4378|consensus 81.0 74 0.0016 35.7 16.3 54 141-198 131-185 (673)
79 KOG0288|consensus 80.7 23 0.0005 38.6 12.2 90 234-351 365-458 (459)
80 KOG1274|consensus 80.7 1.2E+02 0.0025 36.6 18.7 135 293-483 33-169 (933)
81 PF04053 Coatomer_WDAD: Coatom 80.2 1.1E+02 0.0023 34.4 20.7 223 86-395 35-262 (443)
82 KOG1036|consensus 79.5 88 0.0019 33.0 15.7 142 149-344 152-293 (323)
83 PHA02713 hypothetical protein; 79.0 47 0.001 38.3 15.3 72 347-418 368-461 (557)
84 PF08450 SGL: SMP-30/Gluconola 78.5 77 0.0017 31.8 17.8 83 325-408 38-133 (246)
85 KOG2055|consensus 78.2 93 0.002 34.6 15.9 88 293-393 323-415 (514)
86 KOG2445|consensus 77.1 64 0.0014 34.2 13.7 69 275-354 238-318 (361)
87 KOG2321|consensus 76.8 86 0.0019 35.9 15.4 174 99-304 64-259 (703)
88 KOG0289|consensus 76.1 1.3E+02 0.0029 33.2 24.0 91 293-398 367-463 (506)
89 PHA03098 kelch-like protein; P 76.0 47 0.001 37.8 14.2 83 333-415 385-482 (534)
90 PHA02713 hypothetical protein; 74.8 42 0.00091 38.7 13.4 73 347-419 433-511 (557)
91 PF00780 CNH: CNH domain; Int 74.8 1E+02 0.0022 31.4 26.0 49 144-196 106-155 (275)
92 PF00780 CNH: CNH domain; Int 74.8 1E+02 0.0022 31.4 20.2 66 275-359 104-170 (275)
93 PF08662 eIF2A: Eukaryotic tra 74.8 89 0.0019 30.6 15.3 126 169-360 49-185 (194)
94 PF14783 BBS2_Mid: Ciliary BBS 74.7 24 0.00051 31.8 8.8 54 465-544 16-69 (111)
95 PF14779 BBS1: Ciliary BBSome 74.3 14 0.0003 38.2 8.3 75 252-350 173-254 (257)
96 PF08596 Lgl_C: Lethal giant l 74.1 25 0.00055 38.7 10.8 135 11-162 134-292 (395)
97 KOG4441|consensus 73.3 69 0.0015 37.1 14.6 103 316-418 406-520 (571)
98 KOG2055|consensus 73.0 1.6E+02 0.0035 32.8 22.1 142 22-197 218-364 (514)
99 KOG1587|consensus 72.9 30 0.00065 39.9 11.3 119 256-395 345-472 (555)
100 KOG0771|consensus 72.3 36 0.00079 37.1 11.0 48 370-419 284-333 (398)
101 KOG0274|consensus 71.3 72 0.0016 36.7 14.0 92 276-392 341-438 (537)
102 KOG2445|consensus 71.3 58 0.0013 34.5 11.8 67 275-354 183-256 (361)
103 KOG1407|consensus 71.2 1.4E+02 0.0029 31.2 16.8 165 142-346 77-251 (313)
104 KOG0299|consensus 70.4 60 0.0013 35.9 12.2 137 276-483 214-357 (479)
105 KOG0316|consensus 70.3 1.3E+02 0.0028 30.9 13.6 139 344-549 121-260 (307)
106 KOG2048|consensus 70.0 1.7E+02 0.0038 34.0 16.1 81 317-398 374-460 (691)
107 KOG0269|consensus 69.8 22 0.00048 41.6 9.2 71 293-374 197-270 (839)
108 KOG0310|consensus 69.7 1.9E+02 0.0042 32.3 19.5 89 293-394 174-267 (487)
109 KOG3914|consensus 67.8 18 0.00039 39.2 7.5 92 377-483 74-182 (390)
110 KOG0270|consensus 67.6 1E+02 0.0022 34.1 13.1 90 256-357 174-277 (463)
111 KOG0268|consensus 67.6 1.7E+02 0.0037 31.8 14.4 92 293-397 208-304 (433)
112 PHA03098 kelch-like protein; P 66.2 53 0.0012 37.4 11.7 84 332-415 337-432 (534)
113 COG2706 3-carboxymuconate cycl 65.4 2E+02 0.0044 31.0 28.1 192 116-362 110-331 (346)
114 TIGR03866 PQQ_ABC_repeats PQQ- 65.4 1.5E+02 0.0033 29.6 33.2 45 145-195 44-90 (300)
115 KOG0296|consensus 65.3 1.5E+02 0.0032 32.1 13.5 95 321-419 100-199 (399)
116 PF14727 PHTB1_N: PTHB1 N-term 65.3 2.3E+02 0.005 31.6 17.7 77 80-158 235-316 (418)
117 KOG3621|consensus 65.3 20 0.00043 41.6 7.6 147 232-409 55-209 (726)
118 KOG1896|consensus 65.1 49 0.0011 40.9 11.0 92 296-397 1117-1215(1366)
119 PF13360 PQQ_2: PQQ-like domai 64.0 1.5E+02 0.0033 29.0 17.8 134 232-401 3-144 (238)
120 COG4257 Vgb Streptogramin lyas 63.4 2E+02 0.0044 30.3 18.5 82 97-193 36-119 (353)
121 KOG0294|consensus 61.9 2.2E+02 0.0049 30.3 16.8 52 293-357 105-160 (362)
122 KOG0279|consensus 61.7 2.1E+02 0.0046 30.0 15.6 110 255-394 148-261 (315)
123 KOG2079|consensus 61.3 17 0.00036 44.2 6.3 100 276-396 99-206 (1206)
124 KOG0319|consensus 60.7 3.4E+02 0.0075 32.1 25.7 374 100-549 206-622 (775)
125 KOG4441|consensus 60.4 1.7E+02 0.0037 34.0 14.4 92 325-419 378-474 (571)
126 KOG0268|consensus 59.5 62 0.0014 34.9 9.6 17 466-482 243-259 (433)
127 KOG1188|consensus 58.9 2E+02 0.0044 30.9 13.1 144 275-484 39-198 (376)
128 KOG1408|consensus 57.2 3.1E+02 0.0067 32.5 15.0 215 293-544 479-711 (1080)
129 KOG0273|consensus 56.7 2.1E+02 0.0045 32.1 13.2 170 330-570 238-413 (524)
130 PF14655 RAB3GAP2_N: Rab3 GTPa 56.7 27 0.00058 38.8 6.7 45 249-302 50-96 (415)
131 KOG0294|consensus 56.6 2.8E+02 0.006 29.7 21.4 197 231-511 106-305 (362)
132 PF04053 Coatomer_WDAD: Coatom 56.0 2E+02 0.0043 32.3 13.5 63 329-397 110-175 (443)
133 KOG0280|consensus 55.7 2.2E+02 0.0047 30.2 12.5 69 346-414 46-122 (339)
134 KOG0303|consensus 55.7 2.2E+02 0.0047 31.3 12.8 33 326-358 80-116 (472)
135 KOG0291|consensus 55.2 4.3E+02 0.0094 31.5 25.8 113 293-419 75-198 (893)
136 KOG0316|consensus 54.0 2E+02 0.0044 29.5 11.7 54 466-543 157-210 (307)
137 KOG0292|consensus 53.3 1.1E+02 0.0025 36.8 11.1 117 275-419 20-144 (1202)
138 KOG1446|consensus 52.1 3.2E+02 0.0069 29.0 27.5 38 150-193 34-72 (311)
139 TIGR02276 beta_rpt_yvtn 40-res 51.6 45 0.00097 23.3 5.2 37 144-186 4-42 (42)
140 PF08662 eIF2A: Eukaryotic tra 50.9 2.5E+02 0.0054 27.4 16.1 124 277-419 18-152 (194)
141 PF00325 Crp: Bacterial regula 49.8 27 0.00058 24.2 3.4 26 609-634 4-29 (32)
142 KOG0303|consensus 48.5 2.6E+02 0.0057 30.7 12.1 37 326-362 172-211 (472)
143 KOG0640|consensus 46.7 1E+02 0.0022 32.8 8.5 201 150-416 192-405 (430)
144 PF13404 HTH_AsnC-type: AsnC-t 46.2 25 0.00054 25.8 3.0 39 594-632 4-42 (42)
145 KOG1332|consensus 45.1 1.4E+02 0.003 30.8 9.0 95 293-397 31-136 (299)
146 KOG0279|consensus 45.1 3.9E+02 0.0085 28.1 19.9 52 293-357 212-265 (315)
147 KOG1517|consensus 44.8 7.2E+02 0.016 31.1 16.4 61 293-360 1277-1339(1387)
148 KOG0771|consensus 44.8 4.1E+02 0.0089 29.2 13.0 60 275-354 292-354 (398)
149 PF14779 BBS1: Ciliary BBSome 44.0 64 0.0014 33.4 6.7 59 466-544 197-256 (257)
150 KOG4649|consensus 43.2 3.5E+02 0.0077 28.3 11.6 106 183-354 16-121 (354)
151 PF12341 DUF3639: Protein of u 43.1 43 0.00093 22.3 3.4 16 276-300 11-26 (27)
152 KOG4547|consensus 42.4 3.6E+02 0.0078 30.9 12.6 100 274-394 68-171 (541)
153 KOG1538|consensus 42.3 6.5E+02 0.014 29.8 18.7 67 260-354 14-83 (1081)
154 PHA02790 Kelch-like protein; P 42.2 1.5E+02 0.0032 33.5 10.0 69 346-419 376-445 (480)
155 PF14781 BBS2_N: Ciliary BBSom 41.9 1E+02 0.0022 28.8 6.9 74 254-354 46-123 (136)
156 KOG0285|consensus 41.7 2.3E+02 0.0049 30.8 10.3 140 293-487 297-444 (460)
157 KOG0305|consensus 40.9 1.8E+02 0.0039 33.0 10.1 102 337-457 188-295 (484)
158 KOG3914|consensus 40.4 3.7E+02 0.0081 29.4 11.9 102 274-395 72-181 (390)
159 KOG0266|consensus 39.5 5.8E+02 0.013 28.5 22.4 126 232-385 310-442 (456)
160 PRK01742 tolB translocation pr 39.2 4.2E+02 0.0091 29.2 12.9 78 327-404 203-287 (429)
161 cd00216 PQQ_DH Dehydrogenases 37.5 6.5E+02 0.014 28.4 17.0 63 229-304 253-320 (488)
162 KOG2114|consensus 36.8 2.5E+02 0.0054 33.8 10.6 82 251-357 120-204 (933)
163 PF14761 HPS3_N: Hermansky-Pud 36.7 74 0.0016 32.0 5.6 54 329-382 19-76 (215)
164 KOG1445|consensus 36.4 2.2E+02 0.0049 33.1 9.8 125 279-406 27-168 (1012)
165 KOG0263|consensus 35.7 1.9E+02 0.004 34.2 9.3 91 293-395 555-649 (707)
166 KOG2394|consensus 35.5 3.9E+02 0.0084 30.6 11.3 78 337-418 301-382 (636)
167 PF13412 HTH_24: Winged helix- 35.3 54 0.0012 24.1 3.5 38 596-633 6-43 (48)
168 PTZ00421 coronin; Provisional 35.1 7.2E+02 0.016 28.2 29.9 130 233-396 149-291 (493)
169 KOG0271|consensus 34.5 4.8E+02 0.01 28.7 11.4 98 231-358 178-280 (480)
170 KOG0645|consensus 32.4 6.2E+02 0.013 26.6 25.4 174 150-393 35-223 (312)
171 PF13936 HTH_38: Helix-turn-he 32.2 78 0.0017 23.2 3.8 32 597-629 11-42 (44)
172 PF08279 HTH_11: HTH domain; 31.4 54 0.0012 24.8 3.0 27 608-634 16-42 (55)
173 PLN02153 epithiospecifier prot 31.2 6.5E+02 0.014 26.6 18.7 72 347-418 160-249 (341)
174 PF08728 CRT10: CRT10; InterP 30.4 2.1E+02 0.0046 34.0 8.8 69 377-481 177-245 (717)
175 COG3823 Glutamine cyclotransfe 30.2 2.8E+02 0.006 28.1 8.3 72 333-407 51-127 (262)
176 KOG1645|consensus 29.6 1.3E+02 0.0028 33.1 6.3 88 333-422 201-293 (463)
177 KOG2919|consensus 29.4 4.6E+02 0.01 28.2 10.2 77 317-396 242-328 (406)
178 PF08220 HTH_DeoR: DeoR-like h 29.4 66 0.0014 25.0 3.2 25 609-633 16-40 (57)
179 KOG1240|consensus 29.3 1.3E+03 0.028 29.4 17.0 58 104-161 1058-1129(1431)
180 TIGR03866 PQQ_ABC_repeats PQQ- 29.2 5.7E+02 0.012 25.3 31.9 40 150-195 9-48 (300)
181 COG1654 BirA Biotin operon rep 28.5 78 0.0017 26.7 3.6 26 608-633 20-45 (79)
182 TIGR03300 assembly_YfgL outer 28.1 7.5E+02 0.016 26.3 21.1 53 337-392 241-294 (377)
183 KOG0274|consensus 28.1 9.8E+02 0.021 27.6 19.4 148 232-413 351-500 (537)
184 KOG1188|consensus 27.9 3.6E+02 0.0078 29.1 9.1 125 231-385 49-186 (376)
185 PF12894 Apc4_WD40: Anaphase-p 27.4 1E+02 0.0022 23.2 3.7 20 275-303 22-41 (47)
186 smart00550 Zalpha Z-DNA-bindin 27.4 91 0.002 25.1 3.8 37 597-633 10-48 (68)
187 KOG2096|consensus 27.3 8.1E+02 0.018 26.4 14.1 61 293-357 298-363 (420)
188 KOG3621|consensus 27.2 2.3E+02 0.0051 33.3 8.2 103 331-447 39-147 (726)
189 KOG0302|consensus 26.9 8.6E+02 0.019 26.7 11.8 151 132-353 218-377 (440)
190 PF11239 DUF3040: Protein of u 26.9 39 0.00084 28.4 1.6 24 545-568 2-25 (82)
191 PLN02153 epithiospecifier prot 26.9 6.9E+02 0.015 26.4 11.7 60 346-405 217-292 (341)
192 KOG0280|consensus 26.8 5.2E+02 0.011 27.5 9.9 111 276-394 24-150 (339)
193 PF05920 Homeobox_KN: Homeobox 26.7 1.2E+02 0.0026 21.9 3.9 28 606-633 12-39 (40)
194 PRK04922 tolB translocation pr 26.6 8.5E+02 0.018 26.8 12.7 80 327-406 203-289 (433)
195 KOG0649|consensus 26.4 2.4E+02 0.0053 29.1 7.3 65 328-394 209-273 (325)
196 KOG0643|consensus 26.2 7.8E+02 0.017 25.9 18.0 207 276-577 64-296 (327)
197 KOG2114|consensus 26.2 1.2E+03 0.025 28.5 13.6 97 276-395 35-155 (933)
198 PHA02762 hypothetical protein; 25.8 1.2E+02 0.0026 23.5 3.8 43 440-486 4-50 (62)
199 KOG1407|consensus 25.6 7.9E+02 0.017 25.7 10.9 65 328-393 65-134 (313)
200 PF02978 SRP_SPB: Signal pepti 25.3 1.1E+02 0.0024 27.0 4.3 28 607-634 73-100 (104)
201 TIGR02658 TTQ_MADH_Hv methylam 25.3 9E+02 0.02 26.3 14.2 102 232-359 27-141 (352)
202 KOG0307|consensus 25.1 1.5E+02 0.0033 36.4 6.5 120 277-413 81-233 (1049)
203 TIGR03547 muta_rot_YjhT mutatr 25.0 7.2E+02 0.016 26.2 11.4 15 232-246 168-184 (346)
204 KOG0308|consensus 24.6 1.2E+03 0.026 27.5 14.5 80 325-404 115-210 (735)
205 PRK11138 outer membrane biogen 24.3 4.5E+02 0.0098 28.4 9.9 57 336-392 334-391 (394)
206 PF08954 DUF1900: Domain of un 24.2 2.1E+02 0.0045 26.7 6.1 49 461-515 20-68 (136)
207 PF02954 HTH_8: Bacterial regu 24.2 74 0.0016 23.0 2.5 36 595-630 6-41 (42)
208 PHA02790 Kelch-like protein; P 24.0 4E+02 0.0086 30.0 9.6 81 336-416 270-358 (480)
209 PF02239 Cytochrom_D1: Cytochr 23.9 9.5E+02 0.021 26.1 20.8 197 94-361 3-209 (369)
210 PF07433 DUF1513: Protein of u 23.7 8.5E+02 0.018 26.0 11.1 148 178-362 99-255 (305)
211 KOG0321|consensus 23.6 1.9E+02 0.0041 33.6 6.5 72 275-361 63-137 (720)
212 PF02042 RWP-RK: RWP-RK domain 23.4 1.8E+02 0.0039 22.5 4.5 36 593-631 4-39 (52)
213 COG4823 AbiF Abortive infectio 23.3 1.1E+02 0.0023 31.7 4.1 46 592-637 163-212 (299)
214 TIGR03300 assembly_YfgL outer 23.1 4.1E+02 0.0089 28.4 9.2 51 336-386 319-370 (377)
215 PF11768 DUF3312: Protein of u 23.1 1.2E+03 0.026 26.9 24.3 125 275-415 218-349 (545)
216 COG1522 Lrp Transcriptional re 22.9 73 0.0016 29.5 2.9 41 594-634 9-49 (154)
217 PRK02889 tolB translocation pr 22.8 8.3E+02 0.018 26.9 11.7 59 346-404 220-279 (427)
218 smart00419 HTH_CRP helix_turn_ 22.6 1.2E+02 0.0026 21.7 3.5 26 609-634 10-35 (48)
219 PF06971 Put_DNA-bind_N: Putat 22.5 91 0.002 23.9 2.7 19 611-629 32-50 (50)
220 PRK03629 tolB translocation pr 21.5 1.1E+03 0.024 25.9 13.0 60 346-405 223-283 (429)
221 KOG0271|consensus 21.4 1.1E+03 0.024 26.0 14.4 88 327-418 115-208 (480)
222 cd00086 homeodomain Homeodomai 21.2 2.4E+02 0.0053 21.1 5.1 37 597-633 13-53 (59)
223 KOG4283|consensus 21.1 8.5E+02 0.018 26.0 10.1 93 232-355 124-220 (397)
224 KOG1063|consensus 21.1 1.4E+03 0.031 27.1 13.7 187 233-488 35-230 (764)
225 PRK11138 outer membrane biogen 20.7 1.1E+03 0.023 25.5 14.2 63 335-400 292-356 (394)
226 KOG0319|consensus 20.6 1.3E+03 0.028 27.6 12.4 77 327-403 21-98 (775)
227 KOG0284|consensus 20.5 1.2E+03 0.026 25.9 12.4 209 107-391 149-376 (464)
228 KOG1900|consensus 20.5 5.1E+02 0.011 32.9 9.7 22 337-358 90-112 (1311)
229 PF13545 HTH_Crp_2: Crp-like h 20.5 1.3E+02 0.0028 24.1 3.6 24 610-633 31-54 (76)
230 PRK05137 tolB translocation pr 20.4 1.2E+03 0.025 25.7 13.0 79 327-405 201-286 (435)
231 PF13730 HTH_36: Helix-turn-he 20.0 1.4E+02 0.003 22.5 3.4 25 610-634 28-52 (55)
232 KOG0974|consensus 20.0 1.4E+03 0.03 28.3 12.9 85 251-360 124-211 (967)
No 1
>KOG1896|consensus
Probab=100.00 E-value=1.6e-107 Score=917.36 Aligned_cols=573 Identities=45% Similarity=0.782 Sum_probs=524.0
Q ss_pred cceEEEeeecccCC--CCceEEEEEEC-CcEEEEEEEe-cCCCCceeeEEEeccccccc--cC-----Cc--cCCCCCCC
Q psy92 15 TIVQELLTVSLGLH--GNRPLLLVRTQ-HELLIYQAFR-HPKGALKLRFKKLKVLFVSD--RS-----KR--ANEQPGLP 81 (638)
Q Consensus 15 ~~~~eil~~~lg~~--~~~p~L~~~~~-~~l~~Y~~~~-~~~~~~~~rf~kv~~~~~~~--~~-----~~--~~~~~~~~ 81 (638)
+.+++++...||.. ..+|||++.+. +++++|++|+ .+.+++.++||||++..... +| +. +..+++..
T Consensus 778 ~~l~q~~~~~L~~e~~~~e~~L~lv~~~~eil~Ykaf~~~~~~~~~~~f~kvp~~~~~~~~~p~~~~~~~~~~~~e~~~~ 857 (1366)
T KOG1896|consen 778 LELKQLFVNPLGSEIVFKEPHLFLVVSDNEILIYKAFPQLSQGNLKVFFKKVPHNLNIRTDKPHFLCKKREGGGAEEGAS 857 (1366)
T ss_pred hHHHHhhccccchhhhccCCceEEEEeCceEEEEeeccccCccchhhhhhhCCHhhcccccCCcccchhhcccccccccc
Confidence 57888999999988 67888887775 5999999994 56778999999999754331 22 11 23444466
Q ss_pred CcceeeeEEEeeecCCceeEEecCCCCeEEEEecCCceEEEecCCCCCccEEecccCCCCCCcEEEEEcCCeEEEEEeCC
Q psy92 82 RGVRISQMRYFSNIAGYQGVFLCGPHPAWLFLTSRGELRAHPMTIDGPVSTLAPFHNVNCPRGFLYFNAKSELRISVLPT 161 (638)
Q Consensus 82 ~~~~~~~l~~f~~~~g~~~Vf~~g~~P~~i~~~~~~~l~~~pl~~~~~v~~~a~F~~~~~~~gfl~~~~~~~L~I~~l~~ 161 (638)
.+....+|++|++++|+++||+||++|+||+.+.+|.+++||+-.+++|.++||||+++||+||+|++.++.|+||.++.
T Consensus 858 ~~~~~~~m~~f~~i~ghsgvfv~Gs~P~~il~t~rg~lr~h~~~gngpv~sfapfhnvn~p~gfiyvd~~~~l~i~~lp~ 937 (1366)
T KOG1896|consen 858 VSVIVQRMTYFEDIGGHSGVFVTGSKPYLILLTFRGVLRFHPVFGNGPVGSFAPFHNVNCPRGFIYVDRQGELVICVLPE 937 (1366)
T ss_pred ccceeeeEEeeccccCeeEEEEecCCceEEEEEcccccceeeeecCCcceeeeeeeccCCCcceEEECCCceEEEEEcch
Confidence 66778899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCceeEEEeCCCcccEEEEecCCCEEEEEEeeecCCCcccccCCccccccCCCCCCCCCCCcccccEEEEEeCCC
Q psy92 162 HLSYDAPWPVRKVPLKCTPHFLAYHLETKTYCIVTSTAEPSTDYYKFNGEDKELVTDPRDSRFIPPLVSQFHVSLFSPFS 241 (638)
Q Consensus 162 ~~~~~~~~~~r~ipL~~tp~ri~y~~~~~~~~V~~s~~~~~~~~~~~~~e~~e~~~~~~~~~~~~p~~~~~~i~lid~~t 241 (638)
...||++||+|+|||++|||+++||++.+.|+|+++.+.++ +.+ ++|++.+....+++...|..++++|+|++|.+
T Consensus 938 ~~~Ydn~wPvkkIpl~~T~~~vvYh~e~~vy~v~t~~~~~~---~~~-~~d~~e~~~~~de~~~~p~~~~f~i~LisP~s 1013 (1366)
T KOG1896|consen 938 ALSYDNKWPVKKIPLRKTPHQVVYHYEKKVYAVITSTPVPY---ERL-GEDGEEEVISRDENVIHPEGEQFSIQLISPES 1013 (1366)
T ss_pred hcccCCCCcccccccccchhheeeeccceEEEEEEecccee---eec-ccccccccccccccccccccccceeEEecCCc
Confidence 99999999999999999999999999999999999876443 344 34444455677889999999999999999999
Q ss_pred ceeecceeecCCCceeEeEEEEEEeeccCccCCcccEEEEeecccCCCCcccceeEEEEEEEEeecCCCCccccCceEEE
Q psy92 242 WEEIPQTNFPLHEWEHVLCLKNVSMEYEGTLSGLRGYIALGTNYNYSEDVTCRGRILLFDIIEVVPEPGQPLTKNKIKMI 321 (638)
Q Consensus 242 ~~~i~~~~~~l~~~E~v~si~~v~l~~~~~~~~~~~~ivVGT~~~~~ed~~~~GrI~vf~i~~vvpe~g~~~t~~kLkl~ 321 (638)
|++++ .++|++||+|++|+.+.|..+++++++++||+|||++..|||.++|||+++|+|++||||||+|.|++|||.+
T Consensus 1014 w~vi~--~iefq~~E~v~~~k~v~L~~~~t~~~~k~ylavGT~~~~gEDv~~RGr~hi~diIeVVPepgkP~t~~KlKel 1091 (1366)
T KOG1896|consen 1014 WEVID--KIEFQENEHVLHMKYVILDDEETTKGKKPYLAVGTAFIQGEDVPARGRIHIFDIIEVVPEPGKPFTKNKLKEL 1091 (1366)
T ss_pred ccccc--ccccCccceeeEEEEEEEEecccccCCcceEEEEEeecccccccCcccEEEEEEEEecCCCCCCcccceeeee
Confidence 99999 6999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeeCCceEEEccccCeeEEEecCEEEEEEe-eCCceeeeEEeecceeEEEEeeecCEEEEeeccCcEEEEEEeccCCe
Q psy92 322 YAKEQKGPVTAICHVAGFLVTAVGQKIYIWQL-KDNDLTGIAFIDTEVYIASMVSVKNLILVGDYARSIALLRYQPEYRT 400 (638)
Q Consensus 322 ~~~~~~G~V~al~~~~g~Ll~avg~~l~v~~l-~~~~L~~~a~~d~~~~i~~i~~~~~~IlvgD~~~Sv~ll~~~~~~~~ 400 (638)
+++|+||+|.++|+++|+|+.++||||++|+| ++..|.++||+|++.|+++++++||+|++||+|||++|++|++++++
T Consensus 1092 ~~eE~KGtVsavceV~G~l~~~~GqKI~v~~l~r~~~ligVaFiD~~~yv~s~~~vknlIl~gDV~ksisfl~fqeep~r 1171 (1366)
T KOG1896|consen 1092 YIEEQKGTVSAVCEVRGHLLSSQGQKIIVRKLDRDSELIGVAFIDLPLYVHSMKVVKNLILAGDVMKSISFLGFQEEPYR 1171 (1366)
T ss_pred ehhhcccceEEEEEeccEEEEccCcEEEEEEeccCCcceeeEEeccceeEEehhhhhhheehhhhhhceEEEEEccCceE
Confidence 99999999999999999999999999999999 57889999999999999999999999999999999999999999999
Q ss_pred EEEEeccCCCcceeeeecccCCCCCcccccccceeeeeeccccccccccccCCcccccccCCCceeEEEEeCCCcEEEEE
Q psy92 401 LSLVARDYKPTQPNSKGYYAGNPSRGIIDGSLVWKFLQLSLGERLEICKKIGSKHNDILDEFSSMGFMISDKDKNVVLFM 480 (638)
Q Consensus 401 l~~~arD~~~~~v~~~~~l~~~~~~~~vd~~~~~~~~~~~~gd~~~~~~r~~~~~~~~~~~~~~l~~l~aD~~~nl~v~~ 480 (638)
|++++||..++++++++|| +| +.+|+|+++|+++||++|.
T Consensus 1172 lsL~srd~~~l~v~s~EFL--------Vd--------------------------------g~~L~flvsDa~rNi~vy~ 1211 (1366)
T KOG1896|consen 1172 LSLLSRDFEPLNVYSTEFL--------VD--------------------------------GSNLSFLVSDADRNIHVYM 1211 (1366)
T ss_pred EEEeecCCchhhceeeeeE--------Ec--------------------------------CCeeEEEEEcCCCcEEEEE
Confidence 9999999999999999999 99 8889999999999999999
Q ss_pred eCCCCcCCCCCceEEEEeeeecCcceeeEEEEeccCCCCCCCCCCCCceEE--EEEeCCCcEEEEEeCChhhHHHHHHHH
Q psy92 481 YQPEARESNGGHRLIKKTDFHLGQHVNTFFKIRCKPSSISDAPGARSRFLT--WYASLDGALGFFLPLPEKNYRRLLMLQ 558 (638)
Q Consensus 481 ~~~~~~~s~~~~~L~~~~~f~lg~~v~~~~~~~~~~~~~~~~~~~~~~~~i--l~~t~~GsIg~l~pl~~~~~~~L~~Lq 558 (638)
|+|++++|++|+||.++++||+|..|++|.+.++++...-- ..++.. +++|+||++|+++||+|+.||||..||
T Consensus 1212 Y~Pe~~eS~~G~RLv~radfhvg~~vs~m~~lp~~~~~e~~----~~~~~~~~v~gtlDG~l~~~~Pl~e~~YRRL~~lQ 1287 (1366)
T KOG1896|consen 1212 YAPENIESLSGQRLVRRADFHVGAHVSTMFRLPCHQNAEFG----SNSPMFYEVFGTLDGGLGHLVPLDEKTYRRLLMLQ 1287 (1366)
T ss_pred eCCCCccccCcceeeeeeeeEeccceeeeEeccccccchhc----cCCchhhhhhcccCCceeEEecCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999865322100 012334 489999999999999999999999999
Q ss_pred HHHHhccCCCCCCCccccccccCCCcccCCCCcceeehHHHHHHHcCCHHHHHHHHHHhCCCHHHHHHHHHHhhhccCCC
Q psy92 559 NVMVTHTSHTGGLNPRAFRTYKGKGYYAGNPSRGIIDGSLVWKFLQLSLGERLEICKKIGSKHNDILDELYDIEALSSHF 638 (638)
Q Consensus 559 ~~l~~~~~~~~gl~p~~~R~~~~~~~~~~~p~~~~IDGdlle~fl~L~~~~q~~ia~~lg~~~~~i~~~l~~l~~~~~~~ 638 (638)
++|.++++|+|||||++||..+... +..+|.|.+|||+||.+|..|+.++|.++|+++|+++.+|+++|.+|.+++++|
T Consensus 1288 n~L~~~~~hv~GLNPr~yR~~~s~~-~~~n~~r~ilDg~ll~~f~yl~~~er~elA~kiGt~~~eIl~DLvel~~~~s~~ 1366 (1366)
T KOG1896|consen 1288 NALMDRLPHVGGLNPRAYRLLDSSL-QLSNSLRSILDGELLNRFSYLSMSEREELAHKIGTTRKEILDDLVELDRLTSSL 1366 (1366)
T ss_pred HHHHHhhhhhcCCCHHHhhhccchh-hhcCCCcccchHhHHHHhhccchhhHHHHHHhcCCCHHHHHHHHHHHHHHhhcC
Confidence 9999999999999999999988776 447899999999999999999999999999999999999999999999999986
No 2
>KOG1897|consensus
Probab=100.00 E-value=3.6e-80 Score=686.98 Aligned_cols=512 Identities=22% Similarity=0.358 Sum_probs=458.2
Q ss_pred CCCccceEEEeeecccCCCCceEEEEEECCcEEEEEEEecCCCCceeeEEEeccccccccCCccCCCCCCCCcceeeeEE
Q psy92 11 AMDETIVQELLTVSLGLHGNRPLLLVRTQHELLIYQAFRHPKGALKLRFKKLKVLFVSDRSKRANEQPGLPRGVRISQMR 90 (638)
Q Consensus 11 ~~~~~~~~eil~~~lg~~~~~p~L~~~~~~~l~~Y~~~~~~~~~~~~rf~kv~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 90 (638)
.+.+.+|++|+++.++ ++.-||+|.++|+.+.|..+....+.++.+ ||++ +|++|..||
T Consensus 577 l~~~~iPRSIl~~~~e--~d~~yLlvalgdG~l~~fv~d~~tg~lsd~-Kk~~------------------lGt~P~~Lr 635 (1096)
T KOG1897|consen 577 LSGEIIPRSILLTTFE--GDIHYLLVALGDGALLYFVLDINTGQLSDR-KKVT------------------LGTQPISLR 635 (1096)
T ss_pred cCCCccchheeeEEee--ccceEEEEEcCCceEEEEEEEcccceEccc-cccc------------------cCCCCcEEE
Confidence 6778899999999996 359999999999999999998877877777 7754 789999999
Q ss_pred EeeecCCceeEEecCCCCeEEEEecCCceEEEecCCCCCccEEecccCCCCCCcEEEEEcCCeEEEEEeCCCCCCCCCce
Q psy92 91 YFSNIAGYQGVFLCGPHPAWLFLTSRGELRAHPMTIDGPVSTLAPFHNVNCPRGFLYFNAKSELRISVLPTHLSYDAPWP 170 (638)
Q Consensus 91 ~f~~~~g~~~Vf~~g~~P~~i~~~~~~~l~~~pl~~~~~v~~~a~F~~~~~~~gfl~~~~~~~L~I~~l~~~~~~~~~~~ 170 (638)
.|++. +.+.|||||+||++||+. ++++.++|++. ..+..+|||++.+||+++++. +++.|+|++|++++ ++|
T Consensus 636 ~f~sk-~~t~vfa~sdrP~viY~~-n~kLv~spls~-kev~~~c~f~s~a~~d~l~~~-~~~~l~i~tid~iq----kl~ 707 (1096)
T KOG1897|consen 636 TFSSK-SRTAVFALSDRPTVIYSS-NGKLVYSPLSL-KEVNHMCPFNSDAYPDSLASA-NGGALTIGTIDEIQ----KLH 707 (1096)
T ss_pred EEeeC-CceEEEEeCCCCEEEEec-CCcEEEeccch-HHhhhhcccccccCCceEEEe-cCCceEEEEecchh----hcc
Confidence 99986 558999999999666665 69999999986 579999999999999997775 79999999999988 599
Q ss_pred eEEEeCCCcccEEEEecCCCEEEEEEeeecCCCcccccCCccccccCCCCCCCCCCCcccccEEEEEeCCCceeecceee
Q psy92 171 VRKVPLKCTPHFLAYHLETKTYCIVTSTAEPSTDYYKFNGEDKELVTDPRDSRFIPPLVSQFHVSLFSPFSWEEIPQTNF 250 (638)
Q Consensus 171 ~r~ipL~~tp~ri~y~~~~~~~~V~~s~~~~~~~~~~~~~e~~e~~~~~~~~~~~~p~~~~~~i~lid~~t~~~i~~~~~ 250 (638)
+|+||++++||||+|++.+.+|+|.|.+.+.+. +. ..+....++++++|++|+++++ .+
T Consensus 708 irtvpl~~~prrI~~q~~sl~~~v~s~r~e~~~-------~~------------~~ee~~~s~l~vlD~nTf~vl~--~h 766 (1096)
T KOG1897|consen 708 IRTVPLGESPRRICYQESSLTFGVLSNRIESSA-------EY------------YGEEYEVSFLRVLDQNTFEVLS--SH 766 (1096)
T ss_pred eeeecCCCChhheEecccceEEEEEecccccch-------hh------------cCCcceEEEEEEecCCceeEEe--ec
Confidence 999999999999999999999999987765431 10 0112456899999999999998 78
Q ss_pred cCCCceeEeEEEEEEeeccCccCCcccEEEEeecccCCCC-cccceeEEEEEEEEeecCCCCccccCceEEEEEEeeCCc
Q psy92 251 PLHEWEHVLCLKNVSMEYEGTLSGLRGYIALGTNYNYSED-VTCRGRILLFDIIEVVPEPGQPLTKNKIKMIYAKEQKGP 329 (638)
Q Consensus 251 ~l~~~E~v~si~~v~l~~~~~~~~~~~~ivVGT~~~~~ed-~~~~GrI~vf~i~~vvpe~g~~~t~~kLkl~~~~~~~G~ 329 (638)
+|++||.+.|+.+++|.++ ...|++|||+++++|+ +|..|||++|++.+ ..||+++++++++|+
T Consensus 767 ef~~~E~~~Si~s~~~~~d-----~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e----------~~~L~~v~e~~v~Ga 831 (1096)
T KOG1897|consen 767 EFERNETALSIISCKFTDD-----PNTYYVVGTGLVYPDENEPVNGRIIVFEFEE----------LNSLELVAETVVKGA 831 (1096)
T ss_pred cccccceeeeeeeeeecCC-----CceEEEEEEEeeccCCCCcccceEEEEEEec----------CCceeeeeeeeeccc
Confidence 9999999999999999764 3699999999999876 59999999999986 369999999999999
Q ss_pred eEEEccccCeeEEEecCEEEEEEeeCC-ceeeeEEeecceeEEEEeeecCEEEEeeccCcEEEEEEeccCCeEEEEeccC
Q psy92 330 VTAICHVAGFLVTAVGQKIYIWQLKDN-DLTGIAFIDTEVYIASMVSVKNLILVGDYARSIALLRYQPEYRTLSLVARDY 408 (638)
Q Consensus 330 V~al~~~~g~Ll~avg~~l~v~~l~~~-~L~~~a~~d~~~~i~~i~~~~~~IlvgD~~~Sv~ll~~~~~~~~l~~~arD~ 408 (638)
|++|+.|+|+|+||+|++|++|+|..+ .|...+.+..++++.++++.+|+|+|||+|+|+++++|+.+++.|+++|||+
T Consensus 832 v~aL~~fngkllA~In~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~~~eg~f~evArD~ 911 (1096)
T KOG1897|consen 832 VYALVEFNGKLLAGINQSVRLYEWTTERELRIECNISNPIIALDLQVKGDEIAVGDLMRSITLLQYKGDEGNFEEVARDY 911 (1096)
T ss_pred eeehhhhCCeEEEecCcEEEEEEccccceehhhhcccCCeEEEEEEecCcEEEEeeccceEEEEEEeccCCceEEeehhh
Confidence 999999999999999999999999966 6888788889999999999999999999999999999999999999999999
Q ss_pred CCcceeeeecccCCCCCcccccccceeeeeeccccccccccccCCcccccccCCCceeEEEEeCCCcEEEEEeCCCCcCC
Q psy92 409 KPTQPNSKGYYAGNPSRGIIDGSLVWKFLQLSLGERLEICKKIGSKHNDILDEFSSMGFMISDKDKNVVLFMYQPEARES 488 (638)
Q Consensus 409 ~~~~v~~~~~l~~~~~~~~vd~~~~~~~~~~~~gd~~~~~~r~~~~~~~~~~~~~~l~~l~aD~~~nl~v~~~~~~~~~s 488 (638)
.|+|++++++| | ++ .++++|++||+++++++..+++.
T Consensus 912 ~p~Wmtaveil---------~-------------------------------~d---~ylgae~~gNlf~v~~d~~~~td 948 (1096)
T KOG1897|consen 912 NPNWMTAVEIL---------D-------------------------------DD---TYLGAENSGNLFTVRKDSDATTD 948 (1096)
T ss_pred CccceeeEEEe---------c-------------------------------Cc---eEEeecccccEEEEEecCCCCch
Confidence 99999999997 5 24 58999999999999999999999
Q ss_pred CCCceEEEEeeeecCcceeeEEEEeccCCCCCCCCCCCCceEEEEEeCCCcEEEEEeCChhhHHHHHHHHHHHHhccCCC
Q psy92 489 NGGHRLIKKTDFHLGQHVNTFFKIRCKPSSISDAPGARSRFLTWYASLDGALGFFLPLPEKNYRRLLMLQNVMVTHTSHT 568 (638)
Q Consensus 489 ~~~~~L~~~~~f~lg~~v~~~~~~~~~~~~~~~~~~~~~~~~il~~t~~GsIg~l~pl~~~~~~~L~~Lq~~l~~~~~~~ 568 (638)
.++++|+..+.||+|+.|++|+.+++.....+ +... ..+.++|||.+|+||++..++.+.|.+|..||++|++.+++.
T Consensus 949 ~eR~~l~~~~~~hlGelvn~f~hg~lv~~~~~-s~~~-~~~~vlfgTv~GsIG~i~sl~~d~~~fL~~Lq~~irk~i~s~ 1026 (1096)
T KOG1897|consen 949 EERQILEEVGKFHLGELVNKFRHGSLVMQLGD-SMIP-LEPKVLFGTVNGSIGIIVSLPQDWYDFLEELQRRIRKVIKSV 1026 (1096)
T ss_pred hhhhcccceeeEEeccceeeeeecceEeeccc-cccC-CCCcEEEEEccceEEEEEecCcchhHHHHHHHHHHHHhhccc
Confidence 99999999999999999999999987633222 1112 234599999999999999999999999999999999999999
Q ss_pred CCCCccccccccCCCcccCCCCcceeehHHHHHHHcCCHHHHHHHHHHhCCC-----HHHHHHHHHHhhhc
Q psy92 569 GGLNPRAFRTYKGKGYYAGNPSRGIIDGSLVWKFLQLSLGERLEICKKIGSK-----HNDILDELYDIEAL 634 (638)
Q Consensus 569 ~gl~p~~~R~~~~~~~~~~~p~~~~IDGdlle~fl~L~~~~q~~ia~~lg~~-----~~~i~~~l~~l~~~ 634 (638)
||++|..||++..+.+ ..|++|||||||||+|++|++.++++|++++..+ ++|+.+.+||++++
T Consensus 1027 gglsH~~yrsf~~e~~--~~P~~gfIDGDLiEsfl~l~~~~~~~i~~~~~~~~~~~s~~el~k~vEel~rl 1095 (1096)
T KOG1897|consen 1027 GGLSHMDYRSFEFEKR--TSPVKGFIDGDLIESFLDLSRSKMREIVRGLEHTESLASVQELLKIVEELTRL 1095 (1096)
T ss_pred CCcchhhHhhhhcccc--cCCCcCcccchHHHhhhccCHHHHHHHHhhcccccccCCHHHHHHHHHHHHhc
Confidence 9999999999988776 6799999999999999999999999999999866 99999999999985
No 3
>COG5161 SFT1 Pre-mRNA cleavage and polyadenylation specificity factor [RNA processing and modification]
Probab=100.00 E-value=1.8e-73 Score=621.30 Aligned_cols=556 Identities=24% Similarity=0.371 Sum_probs=480.5
Q ss_pred ccceEEEeeecccCCCCceEEEEEEC-CcEEEEEEEecCCCCceeeEEEe-c--cccccccCCccCCCCCCCCcceeeeE
Q psy92 14 ETIVQELLTVSLGLHGNRPLLLVRTQ-HELLIYQAFRHPKGALKLRFKKL-K--VLFVSDRSKRANEQPGLPRGVRISQM 89 (638)
Q Consensus 14 ~~~~~eil~~~lg~~~~~p~L~~~~~-~~l~~Y~~~~~~~~~~~~rf~kv-~--~~~~~~~~~~~~~~~~~~~~~~~~~l 89 (638)
.|.+.+++++.+|++-+.|||+.+.- +++++|+++++. ..+|.|- . ..++.+.|.. .+....... ....
T Consensus 752 lpsi~~~mVa~lg~D~keeyLf~~s~~~EI~~yk~~l~r----~~~f~~nvTRndlAitGaPdn--a~~Ka~sSV-~ri~ 824 (1319)
T COG5161 752 LPSIGNYMVAYLGLDLKEEYLFDNSLSSEIVFYKTHLPR----HVSFNLNVTRNDLAITGAPDN--ADIKAFSSV-GRID 824 (1319)
T ss_pred ChhhhhhhhHhhcccccchheehhhcCceEEEEeecccc----cchhhhhcchhhhhccCCCcc--hhhhhcccc-ccee
Confidence 45789999999999999999999986 599999999753 2344332 1 1122223311 111111111 1235
Q ss_pred EEeeecCCceeEEecCCCCeEEEEecCCceEEEecCCCCCccEEecccCCCCCCcEEEEEcCCeEEEEEeCCCCCCC-CC
Q psy92 90 RYFSNIAGYQGVFLCGPHPAWLFLTSRGELRAHPMTIDGPVSTLAPFHNVNCPRGFLYFNAKSELRISVLPTHLSYD-AP 168 (638)
Q Consensus 90 ~~f~~~~g~~~Vf~~g~~P~~i~~~~~~~l~~~pl~~~~~v~~~a~F~~~~~~~gfl~~~~~~~L~I~~l~~~~~~~-~~ 168 (638)
..|....|++.+|++|..|.++.++..+...+.|.. +.|+.+++||+. +|+++++....+|+|+......|. ++
T Consensus 825 m~f~~~vghs~~fvTg~~pfl~~s~~~s~~k~f~~g-NIPlvsv~p~s~----rgy~~Vd~~~~vr~~~~~~dn~y~gnK 899 (1319)
T COG5161 825 MVFIKAVGHSFMFVTGKGPFLCRSRYTSSSKAFHRG-NIPLVSVIPLSK----RGYLMVDNVLGVRASQYVFDNGYVGNK 899 (1319)
T ss_pred EEEeeccCeEEEEEcCCccEEEEEeccCCcceeecC-CCceeeeeeccc----ccEEEEecccceeEEEEEeccceeccc
Confidence 566666789999999999999999888888888885 679999999985 789999988999999998876664 99
Q ss_pred ceeEEEeCCCcccEEEEecCCCEEEEEEeeecCCCcccccCCccccccCCCCCCCCCCCcccccEEEEEeCCCceeecce
Q psy92 169 WPVRKVPLKCTPHFLAYHLETKTYCIVTSTAEPSTDYYKFNGEDKELVTDPRDSRFIPPLVSQFHVSLFSPFSWEEIPQT 248 (638)
Q Consensus 169 ~~~r~ipL~~tp~ri~y~~~~~~~~V~~s~~~~~~~~~~~~~e~~e~~~~~~~~~~~~p~~~~~~i~lid~~t~~~i~~~ 248 (638)
||++++|++.|..+++||+..+.|+|+...+.+| +..+||+|. -..-+++.+.|...++.+.|++|++|++||
T Consensus 900 ~p~k~~~~~Ktlqklvyh~~~~~~~Vgsc~~~~f----~~~gEdgE~-~i~~D~Nvphaeg~~~~vdL~spksw~vID-- 972 (1319)
T COG5161 900 NPVKRTPKHKTLQKLVYHCAGRYMVVGSCEEAGF----SPKGEDGES-GIPVDTNVPHAEGYRFYVDLYSPKSWEVID-- 972 (1319)
T ss_pred CceeeccccccccceeeeccceEEEEEeeeecCc----cccCCCCCc-cCccCCCCcccccceeeEEEecCcceeEee--
Confidence 9999999999999999999999999988877766 334676642 234456677888899999999999999999
Q ss_pred eecCCCceeEeEEEEEEeeccCccCCcccEEEEeecccCCCCcccceeEEEEEEEEeecCCCCccccCceEEEEEEeeCC
Q psy92 249 NFPLHEWEHVLCLKNVSMEYEGTLSGLRGYIALGTNYNYSEDVTCRGRILLFDIIEVVPEPGQPLTKNKIKMIYAKEQKG 328 (638)
Q Consensus 249 ~~~l~~~E~v~si~~v~l~~~~~~~~~~~~ivVGT~~~~~ed~~~~GrI~vf~i~~vvpe~g~~~t~~kLkl~~~~~~~G 328 (638)
+|+|+++|++..|+.+.++..++++++++||+|||++..|||.|.+||+++|+|++|||+||+|.|++|||++..+|++|
T Consensus 973 ~yef~~ne~v~~i~~~~l~~~~~tk~k~pyi~vgtt~~~gED~p~rG~~hv~eII~VVP~pg~P~t~~KLK~~~~Ee~kG 1052 (1319)
T COG5161 973 TYEFDENEYVFHIKYLILDDMQGTKGKSPYILVGTTFIEGEDRPARGRLHVLEIISVVPSPGSPFTDCKLKVLGIEETKG 1052 (1319)
T ss_pred eeecccceeeeeeeeeeeeccccccCCCceEEEEeeecccCccCCcCceEEEEEEEecCCCCCCcccceeeEEehhhccc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEccccCeeEEEecCEEEEEEee-CCceeeeEEeecceeEEEEeeecCEEEEeeccCcEEEEEEeccCCeEEEEecc
Q psy92 329 PVTAICHVAGFLVTAVGQKIYIWQLK-DNDLTGIAFIDTEVYIASMVSVKNLILVGDYARSIALLRYQPEYRTLSLVARD 407 (638)
Q Consensus 329 ~V~al~~~~g~Ll~avg~~l~v~~l~-~~~L~~~a~~d~~~~i~~i~~~~~~IlvgD~~~Sv~ll~~~~~~~~l~~~arD 407 (638)
.|.-+|++.|+++.|+||||+|++++ ++.+.+++|+|+++|++++++.+|++++||+|++++|+.|++++++|+++++.
T Consensus 1053 TV~~vcEV~G~~~~~qgqKV~Vr~i~~~~~iipV~F~Dl~~ft~s~k~~~Nlll~gD~~qg~~F~gF~~ePyRm~l~s~s 1132 (1319)
T COG5161 1053 TVVRVCEVRGKIALCQGQKVMVRKIDRSSGIIPVGFYDLHIFTSSIKVVKNLLLAGDIYQGLSFFGFQSEPYRMHLISSS 1132 (1319)
T ss_pred EEEEEEEEccEEEeccCcEEEEEEecccCCcceeEEEeeeeeeehhhhhhheeehhhhhcCcEEEEecCCcEEEEEecCC
Confidence 99999999999999999999999999 55799999999999999999999999999999999999999999999999999
Q ss_pred CCCcceeeeecccCCCCCcccccccceeeeeeccccccccccccCCcccccccCCCceeEEEEeCCCcEEEEEeCCCCcC
Q psy92 408 YKPTQPNSKGYYAGNPSRGIIDGSLVWKFLQLSLGERLEICKKIGSKHNDILDEFSSMGFMISDKDKNVVLFMYQPEARE 487 (638)
Q Consensus 408 ~~~~~v~~~~~l~~~~~~~~vd~~~~~~~~~~~~gd~~~~~~r~~~~~~~~~~~~~~l~~l~aD~~~nl~v~~~~~~~~~ 487 (638)
...+++++.+|| +. +++|+|+++|++||++++.|+|++|+
T Consensus 1133 ~~~~n~~s~efL--------v~--------------------------------G~~lyf~~~Da~gnih~l~Y~P~np~ 1172 (1319)
T COG5161 1133 EPLRNATSTEFL--------VT--------------------------------GNELYFLCCDAKGNIHGLTYSPNNPI 1172 (1319)
T ss_pred chhhcchhhHhh--------cc--------------------------------CCeeEEEEEcCCCCEEEEecCCCCcc
Confidence 999999999999 87 78899999999999999999999999
Q ss_pred CCCCceEEEEeeeecCcceeeEEEEeccCCCCCCCCCCCCceEEEEEeCCCcEEEEEeCChhhHHHHHHHHHHHHhccCC
Q psy92 488 SNGGHRLIKKTDFHLGQHVNTFFKIRCKPSSISDAPGARSRFLTWYASLDGALGFFLPLPEKNYRRLLMLQNVMVTHTSH 567 (638)
Q Consensus 488 s~~~~~L~~~~~f~lg~~v~~~~~~~~~~~~~~~~~~~~~~~~il~~t~~GsIg~l~pl~~~~~~~L~~Lq~~l~~~~~~ 567 (638)
|..|+||..++.||+|...++|..++.....+. ...+..+.+|+-+||++.+++||+++.||+|.-+|+++.+.+.+
T Consensus 1173 S~sG~RLV~rssFtlhs~~~~m~llPrn~efG~---~~~~~f~~v~~~sdG~l~~vvpisd~~YrrL~~IQ~~i~~r~~~ 1249 (1319)
T COG5161 1173 SMSGARLVKRSSFTLHSAEIKMNLLPRNSEFGA---GFKKNFIMVYSRSDGMLIHVVPISDAHYRRLLGIQTAIMARLKS 1249 (1319)
T ss_pred ccCcceeEeeccccccchhhhhhhccchhhhCC---CCCCceeEEEEccCCcEEEEeccCHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999988763222222 23456789999999999999999999999999999999999999
Q ss_pred CCCCCccccccccCCCcccCCCCcceeehHHHHHHHcCCHHHHHHHHHHhCCCHHHHHHHHHHhh
Q psy92 568 TGGLNPRAFRTYKGKGYYAGNPSRGIIDGSLVWKFLQLSLGERLEICKKIGSKHNDILDELYDIE 632 (638)
Q Consensus 568 ~~gl~p~~~R~~~~~~~~~~~p~~~~IDGdlle~fl~L~~~~q~~ia~~lg~~~~~i~~~l~~l~ 632 (638)
++||||++||-..... ....|.|.++|+.++..|-.|+.+.|+++|.+.|+...-++.+|.++.
T Consensus 1250 vgGLNpr~yRL~~d~~-~~~~s~r~~ld~~ii~~F~y~~~~~r~sva~kaGr~~~~e~~D~i~~~ 1313 (1319)
T COG5161 1250 VGGLNPRDYRLNSDIH-LHSLSLRSPLDLHIINLFSYFDMSTRESVASKAGRIDRKEISDMIASL 1313 (1319)
T ss_pred hcCCChhhhhhccCHH-HhcCCcccchhhhhhhhhhhcchhhhhHHHhhcCCchHHHHHHHHHHH
Confidence 9999999999753322 225788999999999999999999999999999986654444444443
No 4
>KOG1898|consensus
Probab=100.00 E-value=1.7e-64 Score=563.92 Aligned_cols=539 Identities=21% Similarity=0.299 Sum_probs=443.9
Q ss_pred CCccceEEEeeecccCCCC----ceEEEEEECCcEEEEEE-EecCCCCceeeEEEeccccccccCCccCCCCCCCCccee
Q psy92 12 MDETIVQELLTVSLGLHGN----RPLLLVRTQHELLIYQA-FRHPKGALKLRFKKLKVLFVSDRSKRANEQPGLPRGVRI 86 (638)
Q Consensus 12 ~~~~~~~eil~~~lg~~~~----~p~L~~~~~~~l~~Y~~-~~~~~~~~~~rf~kv~~~~~~~~~~~~~~~~~~~~~~~~ 86 (638)
+-...+.++.++.+...++ .-||.+.+.+++ .|+. ...-.|.+... +.. -+|.+|
T Consensus 630 ~l~~~~~s~~iv~~~~~~~~~~~~L~l~~GL~NGv-llR~~id~v~G~l~d~-rtR------------------~lG~~p 689 (1205)
T KOG1898|consen 630 GLSSPPESLCIVEMEATGGTDVAQLYLLIGLRNGV-LLRFVIDTVTGQLLDI-RTR------------------FLGLRP 689 (1205)
T ss_pred ccCCCccceEEEEecccCCccceeEEEEecccccE-EEEEEecccccceeee-hee------------------eecccc
Confidence 3345567788888866543 445555555544 3333 22223443222 111 157889
Q ss_pred eeEEEeeecCCceeEEecCCCCeEEEEecCCceEEEecCCCCCccEEecccCCCCCCcEEEEEcCCeEEEEEeCCCCCCC
Q psy92 87 SQMRYFSNIAGYQGVFLCGPHPAWLFLTSRGELRAHPMTIDGPVSTLAPFHNVNCPRGFLYFNAKSELRISVLPTHLSYD 166 (638)
Q Consensus 87 ~~l~~f~~~~g~~~Vf~~g~~P~~i~~~~~~~l~~~pl~~~~~v~~~a~F~~~~~~~gfl~~~~~~~L~I~~l~~~~~~~ 166 (638)
..|.+|.- .|.+.|++.++|| |+.++.+..+.+.|++. .+++.++||.+.+||.|++++ +++.|+|..+... +
T Consensus 690 vkLf~~~~-~~~s~vL~lSsr~-wl~y~~~~~~h~t~Isy-~~l~~as~~~S~qcpeGiv~i-~~n~l~i~~~~~~---g 762 (1205)
T KOG1898|consen 690 VKLFPISM-RGQSDVLALSSRP-WLLYTYQQEFHLTPISY-STLEHASPFCSEQCPEGIVAI-SKNTLRIIALDKL---G 762 (1205)
T ss_pred ceEEEEee-cCcceeEEecCCh-hhhhhhcceeeeecccc-cchhccccccccCCCcchhhh-hhhhhheeeehhh---c
Confidence 99999964 6889999999999 99999999999999975 589999999999999998887 7999999999974 4
Q ss_pred CCceeEEEeCCCcccEEEEecCCCEEEEEEeeecCCCc-cccc----------CCccccc--c---------CCCCCCCC
Q psy92 167 APWPVRKVPLKCTPHFLAYHLETKTYCIVTSTAEPSTD-YYKF----------NGEDKEL--V---------TDPRDSRF 224 (638)
Q Consensus 167 ~~~~~r~ipL~~tp~ri~y~~~~~~~~V~~s~~~~~~~-~~~~----------~~e~~e~--~---------~~~~~~~~ 224 (638)
..++.+.+|+++|||++++||++++++|+++++.++.. .... .++++|. . ...++...
T Consensus 763 ~~~n~~~~~l~~tprkvv~h~es~lLii~~td~~~~~~~~a~~~~~~~g~v~~s~~~~e~e~g~em~~~~~~~~~~~~v~ 842 (1205)
T KOG1898|consen 763 KVLNVDGFPLAYTPRKVVIHPESGLLIIGRTDHNATLTKDARKNQMEAGGVLESGEEKEDEMGGEMEIIGREEVLPENVY 842 (1205)
T ss_pred ccccccccccccCcceEEEecCCCeEEEEEecccchhhHHHhhhhhhcccccccccccchhhccchhhhccccccccccc
Confidence 57999999999999999999999999999998776631 0000 0111111 0 01112223
Q ss_pred CCCcc---cccEEEEEeCCCceeecceeecCCCceeEeEEEEEEeeccCccCCcccEEEEeecccCCCCc--ccceeEEE
Q psy92 225 IPPLV---SQFHVSLFSPFSWEEIPQTNFPLHEWEHVLCLKNVSMEYEGTLSGLRGYIALGTNYNYSEDV--TCRGRILL 299 (638)
Q Consensus 225 ~~p~~---~~~~i~lid~~t~~~i~~~~~~l~~~E~v~si~~v~l~~~~~~~~~~~~ivVGT~~~~~ed~--~~~GrI~v 299 (638)
..|.+ -.++++++|+.+...+. .+++..||...|++.+.|++.+ ...+++||++.....+. -+.|++|+
T Consensus 843 ~~p~a~~~w~s~I~~~d~~s~~~~~--~~~l~~ne~a~~v~~~~fs~~~----~~~~~~v~~~~~~~l~~~~~~~g~~yt 916 (1205)
T KOG1898|consen 843 GSPRAGNGWVSSIRVFDPKSGKIIC--LVELGQNEAAFSVCAVDFSSSE----YQPFVAVGVATTEQLDSKSISSGFVYT 916 (1205)
T ss_pred cCcccccCccceEEEEcCCCCceEE--EEeecCCcchhheeeeeeccCC----CceEEEEEeeccccccccccCCCceEE
Confidence 33432 23689999999999987 8999999999999999998755 34799999988876653 47999999
Q ss_pred EEEEEeecCCCCccccCceEEEEEEeeCCceEEEccccCeeEEEecCEEEEEEeeCCceeeeEEeec-ceeEEEEeeecC
Q psy92 300 FDIIEVVPEPGQPLTKNKIKMIYAKEQKGPVTAICHVAGFLVTAVGQKIYIWQLKDNDLTGIAFIDT-EVYIASMVSVKN 378 (638)
Q Consensus 300 f~i~~vvpe~g~~~t~~kLkl~~~~~~~G~V~al~~~~g~Ll~avg~~l~v~~l~~~~L~~~a~~d~-~~~i~~i~~~~~ 378 (638)
|++.+. +.||+++|++++.|+|.|||.|+|++++|+|..+++|++++|+|++++.... +.+|+++.+.+.
T Consensus 917 yk~~~~---------g~~lellh~T~~~~~v~Ai~~f~~~~LagvG~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt~~~ 987 (1205)
T KOG1898|consen 917 YKFVRN---------GDKLELLHKTEIPGPVGAICPFQGRVLAGVGRFLRLYDLGKKKLLRKCELKFIPNRISSIQTYGA 987 (1205)
T ss_pred EEEEec---------CceeeeeeccCCCccceEEeccCCEEEEecccEEEEeeCChHHHHhhhhhccCceEEEEEeecce
Confidence 999872 3589999999999999999999999999999999999999999988887655 999999999999
Q ss_pred EEEEeeccCcEEEEEEeccCCeEEEEeccCCCcceeeeecccCCCCCcccccccceeeeeecccccccc--ccccCCccc
Q psy92 379 LILVGDYARSIALLRYQPEYRTLSLVARDYKPTQPNSKGYYAGNPSRGIIDGSLVWKFLQLSLGERLEI--CKKIGSKHN 456 (638)
Q Consensus 379 ~IlvgD~~~Sv~ll~~~~~~~~l~~~arD~~~~~v~~~~~l~~~~~~~~vd~~~~~~~~~~~~gd~~~~--~~r~~~~~~ 456 (638)
+|+|||..+||.+++|+++.++|..+|+|..||||+++.+| | +.|||+|||||| +.|+|.+.+
T Consensus 988 RI~VgD~qeSV~~~~y~~~~n~l~~fadD~~pR~Vt~~~~l---------D------~~tvagaDrfGNi~~vR~P~d~~ 1052 (1205)
T KOG1898|consen 988 RIVVGDIQESVHFVRYRREDNQLIVFADDPVPRHVTALELL---------D------YDTVAGADRFGNIAVVRIPPDVS 1052 (1205)
T ss_pred EEEEeeccceEEEEEEecCCCeEEEEeCCCccceeeEEEEe---------c------CCceeeccccCcEEEEECCCcch
Confidence 99999999999999999999999999999999999999886 9 899999999999 999999998
Q ss_pred ccccCCCceeEEEEeCCCcEEEEEeCCCCcCCCCCceEEEEeeeecCcceeeEEEEeccCCCCCCCCCCCCceEEEEEeC
Q psy92 457 DILDEFSSMGFMISDKDKNVVLFMYQPEARESNGGHRLIKKTDFHLGQHVNTFFKIRCKPSSISDAPGARSRFLTWYASL 536 (638)
Q Consensus 457 ~~~~~~~~l~~l~aD~~~nl~v~~~~~~~~~s~~~~~L~~~~~f~lg~~v~~~~~~~~~~~~~~~~~~~~~~~~il~~t~ 536 (638)
+.++|++.- .+ +.++.+. .+ ...+|.+...+|++|+.++++++... ....++.++|+|+
T Consensus 1053 e~~~edpt~--------~k--~~~~~g~-lN-~~~~K~~~i~~f~v~Dvits~q~~~~---------i~~a~e~~iy~tl 1111 (1205)
T KOG1898|consen 1053 EEASEDPTE--------LK--IAWEQGF-LN-DAPQKVQLISQFFVGDVITSLQKVSS---------IPGARESLIYTTL 1111 (1205)
T ss_pred hhhccCCcc--------cc--ceecccc-cc-cccHhhhhhhhccccCeeeeceeeee---------ccCCcceeeeeec
Confidence 888876531 22 2233332 11 23588999999999999999998764 3456789999999
Q ss_pred CCcEEEEEeCChh-hHHHHHHHHHHHHhccCCCCCCCccccccccCCCcccCCCCcceeehHHHHHHHcCCHHHHHHHHH
Q psy92 537 DGALGFFLPLPEK-NYRRLLMLQNVMVTHTSHTGGLNPRAFRTYKGKGYYAGNPSRGIIDGSLVWKFLQLSLGERLEICK 615 (638)
Q Consensus 537 ~GsIg~l~pl~~~-~~~~L~~Lq~~l~~~~~~~~gl~p~~~R~~~~~~~~~~~p~~~~IDGdlle~fl~L~~~~q~~ia~ 615 (638)
.|+||+|+|+..+ .+.+|+.+|.+|++..++++|+||.+||+| |.|+|.+|||||||+|+.|+..+|++||+
T Consensus 1112 ~GtiG~f~p~~s~~d~~Ff~~~e~~~r~e~ppl~GrDH~~yRsy-------y~Pvk~VIDGDlceqF~~L~~~~Qe~va~ 1184 (1205)
T KOG1898|consen 1112 LGTIGVFAPFLSREDVDFFQHLEMHMRKEYPPLLGRDHLEYRSY-------YAPVKKVIDGDLCEQFLRLEENQQEEVAE 1184 (1205)
T ss_pred cccceEEeecccccchHHHHHHHHhccccCCcccCcchhhhhhh-------ccchhhcccHHHHHHHhhCCHHHHHHHHh
Confidence 9999999999987 677999999999999999999999999999 89999999999999999999999999999
Q ss_pred HhCCCHHHHHHHHHHhhhcc
Q psy92 616 KIGSKHNDILDELYDIEALS 635 (638)
Q Consensus 616 ~lg~~~~~i~~~l~~l~~~~ 635 (638)
.++++++||.++|+++|...
T Consensus 1185 el~~ti~eI~kkledir~~~ 1204 (1205)
T KOG1898|consen 1185 ELDRTIEEISKKLEDIRTRY 1204 (1205)
T ss_pred cccCCHHHHHHHHHHHHhhc
Confidence 99999999999999999863
No 5
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=100.00 E-value=1.6e-56 Score=474.86 Aligned_cols=317 Identities=41% Similarity=0.688 Sum_probs=260.7
Q ss_pred ccEEEEEeCCCceeecceeecCCCceeEeEEEEEEeeccCccCCcccEEEEeecccCCCCcccc-eeEEEEEEEEeecCC
Q psy92 231 QFHVSLFSPFSWEEIPQTNFPLHEWEHVLCLKNVSMEYEGTLSGLRGYIALGTNYNYSEDVTCR-GRILLFDIIEVVPEP 309 (638)
Q Consensus 231 ~~~i~lid~~t~~~i~~~~~~l~~~E~v~si~~v~l~~~~~~~~~~~~ivVGT~~~~~ed~~~~-GrI~vf~i~~vvpe~ 309 (638)
+++|+|+|+.+|++++ +++|+++|+++|++.++|..+++ +.++||||||++..+|+.+++ |||++|++.+.
T Consensus 1 ~s~i~l~d~~~~~~~~--~~~l~~~E~~~s~~~~~l~~~~~--~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~---- 72 (321)
T PF03178_consen 1 ASSIRLVDPTTFEVLD--SFELEPNEHVTSLCSVKLKGDST--GKKEYIVVGTAFNYGEDPEPSSGRILVFEISES---- 72 (321)
T ss_dssp --EEEEEETTTSSEEE--EEEEETTEEEEEEEEEEETTS-----SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS----
T ss_pred CcEEEEEeCCCCeEEE--EEECCCCceEEEEEEEEEcCccc--cccCEEEEEecccccccccccCcEEEEEEEEcc----
Confidence 4789999999999997 89999999999999999986543 468999999999999998777 99999999863
Q ss_pred CCccccCceEEEEEEeeCCceEEEccccCeeEEEecCEEEEEEeeCCc-eeeeEEeecceeEEEEeeecCEEEEeeccCc
Q psy92 310 GQPLTKNKIKMIYAKEQKGPVTAICHVAGFLVTAVGQKIYIWQLKDND-LTGIAFIDTEVYIASMVSVKNLILVGDYARS 388 (638)
Q Consensus 310 g~~~t~~kLkl~~~~~~~G~V~al~~~~g~Ll~avg~~l~v~~l~~~~-L~~~a~~d~~~~i~~i~~~~~~IlvgD~~~S 388 (638)
+.+++||+++++++++|||+||+.++|+|++|+|++|++|+|++++ |.++|+++.+++++++.+.+|+|+|||+++|
T Consensus 73 --~~~~~~l~~i~~~~~~g~V~ai~~~~~~lv~~~g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~~~~I~vgD~~~s 150 (321)
T PF03178_consen 73 --PENNFKLKLIHSTEVKGPVTAICSFNGRLVVAVGNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVFKNYILVGDAMKS 150 (321)
T ss_dssp -------EEEEEEEEEESS-EEEEEEETTEEEEEETTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEETTEEEEEESSSS
T ss_pred --cccceEEEEEEEEeecCcceEhhhhCCEEEEeecCEEEEEEccCcccchhhheecceEEEEEEeccccEEEEEEcccC
Confidence 3345799999999999999999999999999999999999999887 9999999999999999999999999999999
Q ss_pred EEEEEEeccCCeEEEEeccCCCcceeeeecccCCCCCcccccccceeeeeeccccccccccccCCcccccccCCCceeEE
Q psy92 389 IALLRYQPEYRTLSLVARDYKPTQPNSKGYYAGNPSRGIIDGSLVWKFLQLSLGERLEICKKIGSKHNDILDEFSSMGFM 468 (638)
Q Consensus 389 v~ll~~~~~~~~l~~~arD~~~~~v~~~~~l~~~~~~~~vd~~~~~~~~~~~~gd~~~~~~r~~~~~~~~~~~~~~l~~l 468 (638)
+++++|+++.++|.++|||+.++|+++++|| .| + + .++
T Consensus 151 v~~~~~~~~~~~l~~va~d~~~~~v~~~~~l--------~d--------------------------------~-~-~~i 188 (321)
T PF03178_consen 151 VSLLRYDEENNKLILVARDYQPRWVTAAEFL--------VD--------------------------------E-D-TII 188 (321)
T ss_dssp EEEEEEETTTE-EEEEEEESS-BEEEEEEEE---------S--------------------------------S-S-EEE
T ss_pred EEEEEEEccCCEEEEEEecCCCccEEEEEEe--------cC--------------------------------C-c-EEE
Confidence 9999999988899999999999999999997 57 4 3 699
Q ss_pred EEeCCCcEEEEEeCCCCcCCCCCc-eEEEEeeeecCcceeeEEEEeccCCCCCCCCCCCCceEEEEEeCCCcEEEEEe-C
Q psy92 469 ISDKDKNVVLFMYQPEARESNGGH-RLIKKTDFHLGQHVNTFFKIRCKPSSISDAPGARSRFLTWYASLDGALGFFLP-L 546 (638)
Q Consensus 469 ~aD~~~nl~v~~~~~~~~~s~~~~-~L~~~~~f~lg~~v~~~~~~~~~~~~~~~~~~~~~~~~il~~t~~GsIg~l~p-l 546 (638)
++|++||+++|+++|+..++.+++ +|+..++||+|+.|+++++++..+...+. .....+.++|+|.+|+||++.| +
T Consensus 189 ~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~~l~~~~~~~--~~~~~~~i~~~T~~G~Ig~l~p~l 266 (321)
T PF03178_consen 189 VGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFHLGDIVNSFRRGSLIPRSGSS--ESPNRPQILYGTVDGSIGVLIPFL 266 (321)
T ss_dssp EEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEEEE--SS--SSSS---TTEEEEEEEEETTS-EEEEEE-E
T ss_pred EEcCCCeEEEEEECCCCcccccccccceeEEEEECCCccceEEEEEeeecCCCC--cccccceEEEEecCCEEEEEEecC
Confidence 999999999999999988888888 99999999999999999998876531111 1113578999999999999999 9
Q ss_pred ChhhHHHHHHHHHHHHhccCCCCCCCccccccccCCCcccCCCCcceeehHHHHHHHc
Q psy92 547 PEKNYRRLLMLQNVMVTHTSHTGGLNPRAFRTYKGKGYYAGNPSRGIIDGSLVWKFLQ 604 (638)
Q Consensus 547 ~~~~~~~L~~Lq~~l~~~~~~~~gl~p~~~R~~~~~~~~~~~p~~~~IDGdlle~fl~ 604 (638)
+++.|++|..||+.|++.+++++|+||++||+++++ + ....++|||||||++|++
T Consensus 267 ~~~~~~~L~~lQ~~l~~~~~~~~gl~~~~~R~~~~~-~--~~~~~~~iDgdll~~fl~ 321 (321)
T PF03178_consen 267 SEEEYRFLQALQNNLRKHIPSLGGLNPRSFRSYKNP-R--MKRSKGFIDGDLLEQFLE 321 (321)
T ss_dssp -HHHHHHHHHHHHHHHHHS--TTS--HHHHTSEEES-E--EE--BSEEEHHHHHGGGG
T ss_pred CHHHHHHHHHHHHHHHhhCCCCccCChHHhccccCc-c--ccCCCccCcHHHHHHhhC
Confidence 999999999999999999999999999999999765 2 112799999999999986
No 6
>KOG0318|consensus
Probab=97.61 E-value=0.052 Score=59.73 Aligned_cols=124 Identities=11% Similarity=0.233 Sum_probs=84.2
Q ss_pred cccEEEEeecccCCCCcccceeEEEEEEEEeecCCCCccccCceEEEEEEeeCCceEEEcc-ccC-eeEEE-ecCEEEEE
Q psy92 275 LRGYIALGTNYNYSEDVTCRGRILLFDIIEVVPEPGQPLTKNKIKMIYAKEQKGPVTAICH-VAG-FLVTA-VGQKIYIW 351 (638)
Q Consensus 275 ~~~~ivVGT~~~~~ed~~~~GrI~vf~i~~vvpe~g~~~t~~kLkl~~~~~~~G~V~al~~-~~g-~Ll~a-vg~~l~v~ 351 (638)
.+.+++||- ..|.+++|.+... ...+..-.++.+|+|+++.- -+| +|++| ...|+.+|
T Consensus 454 ~~~~vaVGG---------~Dgkvhvysl~g~----------~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~y 514 (603)
T KOG0318|consen 454 DGSEVAVGG---------QDGKVHVYSLSGD----------ELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLY 514 (603)
T ss_pred CCCEEEEec---------ccceEEEEEecCC----------cccceeeeecccCCceEEEECCCCcEEEEeccCCcEEEE
Confidence 368999997 6788999998631 11223345578999999973 334 55555 67799999
Q ss_pred EeeCCc--eeeeEEeecceeEEEEeeecCEEEEeeccCcEEEEEEeccCCeEEEEeccCCCcceeeeecc
Q psy92 352 QLKDND--LTGIAFIDTEVYIASMVSVKNLILVGDYARSIALLRYQPEYRTLSLVARDYKPTQPNSKGYY 419 (638)
Q Consensus 352 ~l~~~~--L~~~a~~d~~~~i~~i~~~~~~IlvgD~~~Sv~ll~~~~~~~~l~~~arD~~~~~v~~~~~l 419 (638)
+..+++ +...+|+...+...+=.-...++.-|-+-.+|.++..+. |.+- ..+++.++..|+.+.++
T Consensus 515 d~~s~~~~~~~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiysv~k-P~~~-i~iknAH~~gVn~v~wl 582 (603)
T KOG0318|consen 515 DVASREVKTNRWAFHTAKINCVAWSPNNKLVATGSLDTNVIIYSVKK-PAKH-IIIKNAHLGGVNSVAWL 582 (603)
T ss_pred EcccCceecceeeeeeeeEEEEEeCCCceEEEeccccceEEEEEccC-hhhh-eEeccccccCceeEEEe
Confidence 998665 455556554433333333445777777777888877643 2233 67788888889999997
No 7
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=97.24 E-value=0.24 Score=48.68 Aligned_cols=98 Identities=18% Similarity=0.306 Sum_probs=57.9
Q ss_pred ccEEEEeecccCCCCcccceeEEEEEEEEeecCCCCccccCceEEEEEEeeCCceEEEccccC--eeEEEe-cCEEEEEE
Q psy92 276 RGYIALGTNYNYSEDVTCRGRILLFDIIEVVPEPGQPLTKNKIKMIYAKEQKGPVTAICHVAG--FLVTAV-GQKIYIWQ 352 (638)
Q Consensus 276 ~~~ivVGT~~~~~ed~~~~GrI~vf~i~~vvpe~g~~~t~~kLkl~~~~~~~G~V~al~~~~g--~Ll~av-g~~l~v~~ 352 (638)
..++++|+ ..|.|.+|++.. ++ .+..+. ..++++++++-..+ .|+++. ...+.+|+
T Consensus 147 ~~~l~~~~---------~~~~i~i~d~~~-----~~-----~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d 205 (289)
T cd00200 147 GTFVASSS---------QDGTIKLWDLRT-----GK-----CVATLT--GHTGEVNSVAFSPDGEKLLSSSSDGTIKLWD 205 (289)
T ss_pred CCEEEEEc---------CCCcEEEEEccc-----cc-----cceeEe--cCccccceEEECCCcCEEEEecCCCcEEEEE
Confidence 46777775 468899998753 11 111111 33568888875443 565554 56899999
Q ss_pred eeCCceeeeEEeecceeEEEEeee--cCEEEEeeccCcEEEEEEe
Q psy92 353 LKDNDLTGIAFIDTEVYIASMVSV--KNLILVGDYARSIALLRYQ 395 (638)
Q Consensus 353 l~~~~L~~~a~~d~~~~i~~i~~~--~~~IlvgD~~~Sv~ll~~~ 395 (638)
+...+....- -.....+.++... +.++++++.-..+.++...
T Consensus 206 ~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~ 249 (289)
T cd00200 206 LSTGKCLGTL-RGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLR 249 (289)
T ss_pred CCCCceecch-hhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcC
Confidence 9865433211 0222345555544 4677777767777777664
No 8
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.18 E-value=0.082 Score=56.18 Aligned_cols=157 Identities=18% Similarity=0.186 Sum_probs=112.2
Q ss_pred eeCCceEEEcccc---------CeeEEEec-----------CEEEEEEeeCC-----ceeeeEEeecceeEEEEeeecCE
Q psy92 325 EQKGPVTAICHVA---------GFLVTAVG-----------QKIYIWQLKDN-----DLTGIAFIDTEVYIASMVSVKNL 379 (638)
Q Consensus 325 ~~~G~V~al~~~~---------g~Ll~avg-----------~~l~v~~l~~~-----~L~~~a~~d~~~~i~~i~~~~~~ 379 (638)
+....|++++.+. .+|++|.+ ..|++|++.+. +|..++..+.+-.+++|...+++
T Consensus 21 ~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~~~~ 100 (321)
T PF03178_consen 21 EPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHSTEVKGPVTAICSFNGR 100 (321)
T ss_dssp ETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEETTE
T ss_pred CCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEEeecCcceEhhhhCCE
Confidence 3456777776543 46777776 56999999873 78888888889999999999999
Q ss_pred EEEeeccCcEEEEEEeccCCeEEEEeccCCCcceeeeecccCCCCCcccccccceeeeeeccccccccccccCCcccccc
Q psy92 380 ILVGDYARSIALLRYQPEYRTLSLVARDYKPTQPNSKGYYAGNPSRGIIDGSLVWKFLQLSLGERLEICKKIGSKHNDIL 459 (638)
Q Consensus 380 IlvgD~~~Sv~ll~~~~~~~~l~~~arD~~~~~v~~~~~l~~~~~~~~vd~~~~~~~~~~~~gd~~~~~~r~~~~~~~~~ 459 (638)
+++| +-..+.+++++... +|...|.=..+..++++... +
T Consensus 101 lv~~-~g~~l~v~~l~~~~-~l~~~~~~~~~~~i~sl~~~---------~------------------------------ 139 (321)
T PF03178_consen 101 LVVA-VGNKLYVYDLDNSK-TLLKKAFYDSPFYITSLSVF---------K------------------------------ 139 (321)
T ss_dssp EEEE-ETTEEEEEEEETTS-SEEEEEEE-BSSSEEEEEEE---------T------------------------------
T ss_pred EEEe-ecCEEEEEEccCcc-cchhhheecceEEEEEEecc---------c------------------------------
Confidence 6665 56889999998754 58777776666677776553 2
Q ss_pred cCCCceeEEEEeCCCcEEEEEeCCCCcCCCCCceEEEEeeeecCcceeeEEEEeccCCCCCCCCCCCCceEEEEEeCCCc
Q psy92 460 DEFSSMGFMISDKDKNVVLFMYQPEARESNGGHRLIKKTDFHLGQHVNTFFKIRCKPSSISDAPGARSRFLTWYASLDGA 539 (638)
Q Consensus 460 ~~~~~l~~l~aD~~~nl~v~~~~~~~~~s~~~~~L~~~~~f~lg~~v~~~~~~~~~~~~~~~~~~~~~~~~il~~t~~Gs 539 (638)
+ .++++|....+++++|+++ +++|...+.=.-.-.+++..-.. .. ..++.+..+|.
T Consensus 140 --~---~I~vgD~~~sv~~~~~~~~------~~~l~~va~d~~~~~v~~~~~l~------------d~-~~~i~~D~~gn 195 (321)
T PF03178_consen 140 --N---YILVGDAMKSVSLLRYDEE------NNKLILVARDYQPRWVTAAEFLV------------DE-DTIIVGDKDGN 195 (321)
T ss_dssp --T---EEEEEESSSSEEEEEEETT------TE-EEEEEEESS-BEEEEEEEE-------------SS-SEEEEEETTSE
T ss_pred --c---EEEEEEcccCEEEEEEEcc------CCEEEEEEecCCCccEEEEEEec------------CC-cEEEEEcCCCe
Confidence 3 5899999999999999873 35677776544455555553331 12 37888999999
Q ss_pred EEEEEeC
Q psy92 540 LGFFLPL 546 (638)
Q Consensus 540 Ig~l~pl 546 (638)
|..+..-
T Consensus 196 l~~l~~~ 202 (321)
T PF03178_consen 196 LFVLRYN 202 (321)
T ss_dssp EEEEEE-
T ss_pred EEEEEEC
Confidence 9888764
No 9
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=97.14 E-value=0.48 Score=50.27 Aligned_cols=128 Identities=16% Similarity=0.195 Sum_probs=74.0
Q ss_pred cCeeEEEe--cCEEEEEEeeC--CceeeeEEeec-------ceeEEEEe--eecCEEEEeec-cCcEEEEEEeccCCeEE
Q psy92 337 AGFLVTAV--GQKIYIWQLKD--NDLTGIAFIDT-------EVYIASMV--SVKNLILVGDY-ARSIALLRYQPEYRTLS 402 (638)
Q Consensus 337 ~g~Ll~av--g~~l~v~~l~~--~~L~~~a~~d~-------~~~i~~i~--~~~~~IlvgD~-~~Sv~ll~~~~~~~~l~ 402 (638)
+.+|+++. .++|.+|++.+ +++..+..+.. +.+...+. -.+.++++++. ..+|.++.++++...+.
T Consensus 186 g~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~ 265 (330)
T PRK11028 186 QQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLS 265 (330)
T ss_pred CCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEE
Confidence 33555553 57999999984 34543332221 11222333 44679999986 57899998877665665
Q ss_pred EEeccCCCcceeeeecccCCCCCcccccccceeeeeeccccccccccccCCcccccccCCCceeEEEEeCCCcEEEEEeC
Q psy92 403 LVARDYKPTQPNSKGYYAGNPSRGIIDGSLVWKFLQLSLGERLEICKKIGSKHNDILDEFSSMGFMISDKDKNVVLFMYQ 482 (638)
Q Consensus 403 ~~arD~~~~~v~~~~~l~~~~~~~~vd~~~~~~~~~~~~gd~~~~~~r~~~~~~~~~~~~~~l~~l~aD~~~nl~v~~~~ 482 (638)
.++.-....+..++.+- .| +..| +++...++.+.+|+.+
T Consensus 266 ~~~~~~~~~~p~~~~~~--------~d--------------------------------g~~l-~va~~~~~~v~v~~~~ 304 (330)
T PRK11028 266 FEGHQPTETQPRGFNID--------HS--------------------------------GKYL-IAAGQKSHHISVYEID 304 (330)
T ss_pred EeEEEeccccCCceEEC--------CC--------------------------------CCEE-EEEEccCCcEEEEEEc
Confidence 55543222222233332 22 4322 3334348889999887
Q ss_pred CCCcCCCCCceEEEEeeeecCcceeeEEE
Q psy92 483 PEARESNGGHRLIKKTDFHLGQHVNTFFK 511 (638)
Q Consensus 483 ~~~~~s~~~~~L~~~~~f~lg~~v~~~~~ 511 (638)
++. ..|.....+.+|...+++.-
T Consensus 305 ~~~------g~l~~~~~~~~g~~P~~~~~ 327 (330)
T PRK11028 305 GET------GLLTELGRYAVGQGPMWVSV 327 (330)
T ss_pred CCC------CcEEEccccccCCCceEEEE
Confidence 531 24666677778888777654
No 10
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=97.04 E-value=0.38 Score=47.33 Aligned_cols=98 Identities=12% Similarity=0.170 Sum_probs=57.5
Q ss_pred ccEEEEeecccCCCCcccceeEEEEEEEEeecCCCCccccCceEEEEEEeeCCceEEEcccc-Cee-EEEe-cCEEEEEE
Q psy92 276 RGYIALGTNYNYSEDVTCRGRILLFDIIEVVPEPGQPLTKNKIKMIYAKEQKGPVTAICHVA-GFL-VTAV-GQKIYIWQ 352 (638)
Q Consensus 276 ~~~ivVGT~~~~~ed~~~~GrI~vf~i~~vvpe~g~~~t~~kLkl~~~~~~~G~V~al~~~~-g~L-l~av-g~~l~v~~ 352 (638)
..++++|+ ..|.|.+|++.. .+...... ...++|++++-.. +.+ +++. ...|++|+
T Consensus 105 ~~~~~~~~---------~~~~i~~~~~~~-----------~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d 163 (289)
T cd00200 105 GRILSSSS---------RDKTIKVWDVET-----------GKCLTTLR-GHTDWVNSVAFSPDGTFVASSSQDGTIKLWD 163 (289)
T ss_pred CCEEEEec---------CCCeEEEEECCC-----------cEEEEEec-cCCCcEEEEEEcCcCCEEEEEcCCCcEEEEE
Confidence 35666665 478999998752 12211111 3467788887544 444 4444 67899999
Q ss_pred eeCCceeeeEEeecceeEEEEeeec--CEEEEeeccCcEEEEEEe
Q psy92 353 LKDNDLTGIAFIDTEVYIASMVSVK--NLILVGDYARSIALLRYQ 395 (638)
Q Consensus 353 l~~~~L~~~a~~d~~~~i~~i~~~~--~~IlvgD~~~Sv~ll~~~ 395 (638)
+...+....- ......+.++.... +.+++|..-..+.++..+
T Consensus 164 ~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~ 207 (289)
T cd00200 164 LRTGKCVATL-TGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLS 207 (289)
T ss_pred ccccccceeE-ecCccccceEEECCCcCEEEEecCCCcEEEEECC
Confidence 9855433211 12223555665544 478888776677766553
No 11
>KOG1539|consensus
Probab=96.87 E-value=1.4 Score=51.25 Aligned_cols=187 Identities=18% Similarity=0.275 Sum_probs=107.1
Q ss_pred eeEEecCCCCeEEEEecCCceEEEecCCCC-CccEEecccCCCCCCcEEEEEcCCeEEEEEeCCCCCCCCCceeEEEeCC
Q psy92 99 QGVFLCGPHPAWLFLTSRGELRAHPMTIDG-PVSTLAPFHNVNCPRGFLYFNAKSELRISVLPTHLSYDAPWPVRKVPLK 177 (638)
Q Consensus 99 ~~Vf~~g~~P~~i~~~~~~~l~~~pl~~~~-~v~~~a~F~~~~~~~gfl~~~~~~~L~I~~l~~~~~~~~~~~~r~ipL~ 177 (638)
..||+...+-..++ .+|+..-+-....+ .|+.+++|- +-.|+++.++.|.|...-..+ ++ .+.+
T Consensus 87 ~~vy~A~g~~i~~~--~rgk~i~~~~~~~~a~v~~l~~fG-----e~lia~d~~~~l~vw~~s~~~-~e--~~l~----- 151 (910)
T KOG1539|consen 87 DYVYVASGNKIYAY--ARGKHIRHTTLLHGAKVHLLLPFG-----EHLIAVDISNILFVWKTSSIQ-EE--LYLQ----- 151 (910)
T ss_pred ceEEEecCcEEEEE--EccceEEEEeccccceEEEEeeec-----ceEEEEEccCcEEEEEecccc-cc--cccc-----
Confidence 45777776664443 35766555554333 678888884 345777778888777665531 11 1111
Q ss_pred CcccEEEEecCCCEEEEEEeeecCCCcccccCCccccccCCCCCCCCCCCcccccEEEEEeCCCceeecceeecCCCce-
Q psy92 178 CTPHFLAYHLETKTYCIVTSTAEPSTDYYKFNGEDKELVTDPRDSRFIPPLVSQFHVSLFSPFSWEEIPQTNFPLHEWE- 256 (638)
Q Consensus 178 ~tp~ri~y~~~~~~~~V~~s~~~~~~~~~~~~~e~~e~~~~~~~~~~~~p~~~~~~i~lid~~t~~~i~~~~~~l~~~E- 256 (638)
+.+.+....++.+. ..|.+=+.++ .--..++.++|++-.+-+.+. +|.+++
T Consensus 152 -----~~~~~~~~~~Ital--~HP~TYLNKI-----------------vvGs~~G~lql~Nvrt~K~v~----~f~~~~s 203 (910)
T KOG1539|consen 152 -----STFLKVEGDFITAL--LHPSTYLNKI-----------------VVGSSQGRLQLWNVRTGKVVY----TFQEFFS 203 (910)
T ss_pred -----ceeeeccCCceeeE--ecchhheeeE-----------------EEeecCCcEEEEEeccCcEEE----Eeccccc
Confidence 12222222221111 1111100000 000245679999988888764 555543
Q ss_pred eEeEEEEEEeeccCccCCcccEEEEeecccCCCCcccceeEEEEEEEEeecCCCCccccCceEEEEEEeeC-CceEEEcc
Q psy92 257 HVLCLKNVSMEYEGTLSGLRGYIALGTNYNYSEDVTCRGRILLFDIIEVVPEPGQPLTKNKIKMIYAKEQK-GPVTAICH 335 (638)
Q Consensus 257 ~v~si~~v~l~~~~~~~~~~~~ivVGT~~~~~ed~~~~GrI~vf~i~~vvpe~g~~~t~~kLkl~~~~~~~-G~V~al~~ 335 (638)
.++|++ .. .--..++||+ ..|+|++|.+.- =|.+.+.+++ |+|++|.
T Consensus 204 ~IT~ie-----qs----PaLDVVaiG~---------~~G~ViifNlK~-------------dkil~sFk~d~g~VtslS- 251 (910)
T KOG1539|consen 204 RITAIE-----QS----PALDVVAIGL---------ENGTVIIFNLKF-------------DKILMSFKQDWGRVTSLS- 251 (910)
T ss_pred ceeEec-----cC----CcceEEEEec---------cCceEEEEEccc-------------CcEEEEEEccccceeEEE-
Confidence 344442 11 1358999999 899999998853 3456666775 9999986
Q ss_pred cc--CeeEEEecC---EEEEEEeeCCceee
Q psy92 336 VA--GFLVTAVGQ---KIYIWQLKDNDLTG 360 (638)
Q Consensus 336 ~~--g~Ll~avg~---~l~v~~l~~~~L~~ 360 (638)
|. |.=+.|+|. .+.+|+|++++|..
T Consensus 252 FrtDG~p~las~~~~G~m~~wDLe~kkl~~ 281 (910)
T KOG1539|consen 252 FRTDGNPLLASGRSNGDMAFWDLEKKKLIN 281 (910)
T ss_pred eccCCCeeEEeccCCceEEEEEcCCCeeee
Confidence 43 654444444 48899999888754
No 12
>KOG1036|consensus
Probab=96.48 E-value=0.44 Score=49.56 Aligned_cols=96 Identities=17% Similarity=0.270 Sum_probs=69.2
Q ss_pred ccEEEEeecccCCCCcccceeEEEEEEEEeecCCCCccccCceEEEEEEeeCCceEEEccc--cCeeEEE-ecCEEEEEE
Q psy92 276 RGYIALGTNYNYSEDVTCRGRILLFDIIEVVPEPGQPLTKNKIKMIYAKEQKGPVTAICHV--AGFLVTA-VGQKIYIWQ 352 (638)
Q Consensus 276 ~~~ivVGT~~~~~ed~~~~GrI~vf~i~~vvpe~g~~~t~~kLkl~~~~~~~G~V~al~~~--~g~Ll~a-vg~~l~v~~ 352 (638)
..-+++|+ ..|.|..+|+.-. ...+ +. ...++|.||+.. .|.+++| =+++|.+|+
T Consensus 65 ~~~~~~G~---------~dg~vr~~Dln~~----------~~~~-ig--th~~~i~ci~~~~~~~~vIsgsWD~~ik~wD 122 (323)
T KOG1036|consen 65 ESTIVTGG---------LDGQVRRYDLNTG----------NEDQ-IG--THDEGIRCIEYSYEVGCVISGSWDKTIKFWD 122 (323)
T ss_pred CceEEEec---------cCceEEEEEecCC----------ccee-ec--cCCCceEEEEeeccCCeEEEcccCccEEEEe
Confidence 35677887 8899999998641 1111 11 346789999876 6777776 588999999
Q ss_pred eeCCceeeeEEeecceeEEEEeeecCEEEEeeccCcEEEEEEe
Q psy92 353 LKDNDLTGIAFIDTEVYIASMVSVKNLILVGDYARSIALLRYQ 395 (638)
Q Consensus 353 l~~~~L~~~a~~d~~~~i~~i~~~~~~IlvgD~~~Sv~ll~~~ 395 (638)
...+... ..+|.+--|-++.+.+|+++||..-+.|.++..+
T Consensus 123 ~R~~~~~--~~~d~~kkVy~~~v~g~~LvVg~~~r~v~iyDLR 163 (323)
T KOG1036|consen 123 PRNKVVV--GTFDQGKKVYCMDVSGNRLVVGTSDRKVLIYDLR 163 (323)
T ss_pred ccccccc--cccccCceEEEEeccCCEEEEeecCceEEEEEcc
Confidence 8854322 2345555777888999999999999999887654
No 13
>KOG0291|consensus
Probab=96.41 E-value=2.7 Score=48.63 Aligned_cols=248 Identities=17% Similarity=0.159 Sum_probs=125.1
Q ss_pred CCCcE--EEEEcCCeEEEEEeCCCCCCCCCceeEEEeCCCcccEEEEecCCCEEEEEEeeecCCCcccccCCccc-ccc-
Q psy92 141 CPRGF--LYFNAKSELRISVLPTHLSYDAPWPVRKVPLKCTPHFLAYHLETKTYCIVTSTAEPSTDYYKFNGEDK-ELV- 216 (638)
Q Consensus 141 ~~~gf--l~~~~~~~L~I~~l~~~~~~~~~~~~r~ipL~~tp~ri~y~~~~~~~~V~~s~~~~~~~~~~~~~e~~-e~~- 216 (638)
.|.|. |.++.+|...++.+.. .....++.+..-...|.++|..+.++|++...- .++..+++-+ +..
T Consensus 64 Sp~g~lllavdE~g~~~lvs~~~------r~Vlh~f~fk~~v~~i~fSPng~~fav~~gn~l---qiw~~P~~~~~~~~p 134 (893)
T KOG0291|consen 64 SPDGTLLLAVDERGRALLVSLLS------RSVLHRFNFKRGVGAIKFSPNGKFFAVGCGNLL---QIWHAPGEIKNEFNP 134 (893)
T ss_pred CCCceEEEEEcCCCcEEEEeccc------ceeeEEEeecCccceEEECCCCcEEEEEeccee---EEEecCcchhcccCc
Confidence 35653 4444455555555554 467777888888999999999999998875311 1112222211 111
Q ss_pred -----------------CCCCCCCCCCCcccccEEEEEeCCCceeecceeecCCCceeEeEEEEEEeeccCccCCcccEE
Q psy92 217 -----------------TDPRDSRFIPPLVSQFHVSLFSPFSWEEIPQTNFPLHEWEHVLCLKNVSMEYEGTLSGLRGYI 279 (638)
Q Consensus 217 -----------------~~~~~~~~~~p~~~~~~i~lid~~t~~~i~~~~~~l~~~E~v~si~~v~l~~~~~~~~~~~~i 279 (638)
+|..+.++..-.....+.+|++-..|+-.. .+.|.-+ =..+..+-|..+ ..+.+
T Consensus 135 Fvl~r~~~g~fddi~si~Ws~DSr~l~~gsrD~s~rl~~v~~~k~~~--~~~l~gH--kd~VvacfF~~~-----~~~l~ 205 (893)
T KOG0291|consen 135 FVLHRTYLGHFDDITSIDWSDDSRLLVTGSRDLSARLFGVDGNKNLF--TYALNGH--KDYVVACFFGAN-----SLDLY 205 (893)
T ss_pred ceEeeeecCCccceeEEEeccCCceEEeccccceEEEEEeccccccc--eEeccCC--CcceEEEEeccC-----cceEE
Confidence 122222222111122344555444444321 2222211 111112223221 12333
Q ss_pred EEeecccCCCCcccceeEEEEEEEEeecCCCCc---------------ccc--Cce--EEEEEEeeC---CceEEEcccc
Q psy92 280 ALGTNYNYSEDVTCRGRILLFDIIEVVPEPGQP---------------LTK--NKI--KMIYAKEQK---GPVTAICHVA 337 (638)
Q Consensus 280 vVGT~~~~~ed~~~~GrI~vf~i~~vvpe~g~~---------------~t~--~kL--kl~~~~~~~---G~V~al~~~~ 337 (638)
.|+ ..|.|.+|.+..--|++.+. +.+ +|. +...+.-.. .-|+|..--.
T Consensus 206 tvs----------kdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~ 275 (893)
T KOG0291|consen 206 TVS----------KDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHK 275 (893)
T ss_pred EEe----------cCceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEeeeecccccceeeeeccC
Confidence 333 68999999998432222110 111 111 111122222 5677765434
Q ss_pred C--eeEEEecCEE-EEEEeeCCceeeeEEe-ecceeEEEEeeecCEEEEeeccCc-EEEEEEeccCCeEEEEeccCCCcc
Q psy92 338 G--FLVTAVGQKI-YIWQLKDNDLTGIAFI-DTEVYIASMVSVKNLILVGDYARS-IALLRYQPEYRTLSLVARDYKPTQ 412 (638)
Q Consensus 338 g--~Ll~avg~~l-~v~~l~~~~L~~~a~~-d~~~~i~~i~~~~~~IlvgD~~~S-v~ll~~~~~~~~l~~~arD~~~~~ 412 (638)
+ .|++|-.+-+ ++|++.+-.|+--..+ +.++...++..-||.|.+|-..-+ +.++.||.+.+-|..-+ +...
T Consensus 276 ~t~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQg---H~~~ 352 (893)
T KOG0291|consen 276 GTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQG---HSDR 352 (893)
T ss_pred CceEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeeccc---cccc
Confidence 4 3555544544 4899887665533333 455555566667999999977643 44557788777766643 2334
Q ss_pred eeeeecc
Q psy92 413 PNSKGYY 419 (638)
Q Consensus 413 v~~~~~l 419 (638)
++++++=
T Consensus 353 i~~l~YS 359 (893)
T KOG0291|consen 353 ITSLAYS 359 (893)
T ss_pred eeeEEEC
Confidence 6676664
No 14
>KOG1539|consensus
Probab=96.33 E-value=0.41 Score=55.53 Aligned_cols=78 Identities=13% Similarity=0.224 Sum_probs=63.3
Q ss_pred CceEEEEEE-eeCCceEEEccccCeeEEEecCEEEEEEeeCCceeeeEEeecc-eeEEEEeeecCEEEEeeccCcEEEEE
Q psy92 316 NKIKMIYAK-EQKGPVTAICHVAGFLVTAVGQKIYIWQLKDNDLTGIAFIDTE-VYIASMVSVKNLILVGDYARSIALLR 393 (638)
Q Consensus 316 ~kLkl~~~~-~~~G~V~al~~~~g~Ll~avg~~l~v~~l~~~~L~~~a~~d~~-~~i~~i~~~~~~IlvgD~~~Sv~ll~ 393 (638)
+||.+++-- ....-|+||+....+.++|.|++|++|..++. -+++++.+ .-+..+...|+.++.+|...++.+..
T Consensus 64 ~kl~ll~vs~~lp~~I~alas~~~~vy~A~g~~i~~~~rgk~---i~~~~~~~~a~v~~l~~fGe~lia~d~~~~l~vw~ 140 (910)
T KOG1539|consen 64 NKLNLLFVSKPLPDKITALASDKDYVYVASGNKIYAYARGKH---IRHTTLLHGAKVHLLLPFGEHLIAVDISNILFVWK 140 (910)
T ss_pred cceEEEEecCCCCCceEEEEecCceEEEecCcEEEEEEccce---EEEEeccccceEEEEeeecceEEEEEccCcEEEEE
Confidence 489988854 78999999999999999999999999987742 22334333 35677888999999999999999998
Q ss_pred Eec
Q psy92 394 YQP 396 (638)
Q Consensus 394 ~~~ 396 (638)
...
T Consensus 141 ~s~ 143 (910)
T KOG1539|consen 141 TSS 143 (910)
T ss_pred ecc
Confidence 754
No 15
>PLN00181 protein SPA1-RELATED; Provisional
Probab=96.22 E-value=1.5 Score=52.64 Aligned_cols=130 Identities=15% Similarity=0.204 Sum_probs=71.8
Q ss_pred EEEEEeCCCceeecceeecCCCceeEeEEEEEEeeccCccCCcccEEEEeecccCCCCcccceeEEEEEEEEeecCCCCc
Q psy92 233 HVSLFSPFSWEEIPQTNFPLHEWEHVLCLKNVSMEYEGTLSGLRGYIALGTNYNYSEDVTCRGRILLFDIIEVVPEPGQP 312 (638)
Q Consensus 233 ~i~lid~~t~~~i~~~~~~l~~~E~v~si~~v~l~~~~~~~~~~~~ivVGT~~~~~ed~~~~GrI~vf~i~~vvpe~g~~ 312 (638)
.+++.|..+.+.+. .+.. ...+.|+ .+... ...++++|+ ..|.|++|++..
T Consensus 599 ~v~iWd~~~~~~~~--~~~~--~~~v~~v---~~~~~-----~g~~latgs---------~dg~I~iwD~~~-------- 649 (793)
T PLN00181 599 SVKLWSINQGVSIG--TIKT--KANICCV---QFPSE-----SGRSLAFGS---------ADHKVYYYDLRN-------- 649 (793)
T ss_pred EEEEEECCCCcEEE--EEec--CCCeEEE---EEeCC-----CCCEEEEEe---------CCCeEEEEECCC--------
Confidence 47777766555443 3332 2234443 33221 247888887 678999999753
Q ss_pred cccCceEEEEEEeeCCceEEEccccCe-eEEEe-cCEEEEEEeeCCc----eeeeEEee---cceeEEEEeeecCEEEEe
Q psy92 313 LTKNKIKMIYAKEQKGPVTAICHVAGF-LVTAV-GQKIYIWQLKDND----LTGIAFID---TEVYIASMVSVKNLILVG 383 (638)
Q Consensus 313 ~t~~kLkl~~~~~~~G~V~al~~~~g~-Ll~av-g~~l~v~~l~~~~----L~~~a~~d---~~~~i~~i~~~~~~Ilvg 383 (638)
.+..+.......++|+++.-.++. |+++. ..+|.+|++.... ...+..+. ......+....+++|++|
T Consensus 650 ---~~~~~~~~~~h~~~V~~v~f~~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasg 726 (793)
T PLN00181 650 ---PKLPLCTMIGHSKTVSYVRFVDSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATG 726 (793)
T ss_pred ---CCccceEecCCCCCEEEEEEeCCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEE
Confidence 111111112456788888755554 44443 3589999986321 11111221 122233344457899999
Q ss_pred eccCcEEEEEE
Q psy92 384 DYARSIALLRY 394 (638)
Q Consensus 384 D~~~Sv~ll~~ 394 (638)
..-..|.++..
T Consensus 727 s~D~~v~iw~~ 737 (793)
T PLN00181 727 SETNEVFVYHK 737 (793)
T ss_pred eCCCEEEEEEC
Confidence 88788777653
No 16
>KOG1273|consensus
Probab=96.11 E-value=0.34 Score=50.60 Aligned_cols=154 Identities=19% Similarity=0.351 Sum_probs=92.4
Q ss_pred ccEEEEeecccCCCCcccceeEEEEEEEEeecCCCCccccCce-EEEEEEeeCCceEEEcc-ccCe-eEEE-ecCEEEEE
Q psy92 276 RGYIALGTNYNYSEDVTCRGRILLFDIIEVVPEPGQPLTKNKI-KMIYAKEQKGPVTAICH-VAGF-LVTA-VGQKIYIW 351 (638)
Q Consensus 276 ~~~ivVGT~~~~~ed~~~~GrI~vf~i~~vvpe~g~~~t~~kL-kl~~~~~~~G~V~al~~-~~g~-Ll~a-vg~~l~v~ 351 (638)
..|++||+ ..||+.+|++..- ++ +++. ..--||++||- -.|+ ||.+ -..++.+|
T Consensus 35 G~~lAvGc---------~nG~vvI~D~~T~-----------~iar~ls--aH~~pi~sl~WS~dgr~LltsS~D~si~lw 92 (405)
T KOG1273|consen 35 GDYLAVGC---------ANGRVVIYDFDTF-----------RIARMLS--AHVRPITSLCWSRDGRKLLTSSRDWSIKLW 92 (405)
T ss_pred cceeeeec---------cCCcEEEEEcccc-----------chhhhhh--ccccceeEEEecCCCCEeeeecCCceeEEE
Confidence 48999998 8999999998741 11 1111 12348888884 3454 5554 34589999
Q ss_pred EeeCCceeeeEEeecceeEEEEeee-cCEEEEeeccCcEEEEEEeccCCeEEEEeccCC-Ccc-eeeeecccCCCCCccc
Q psy92 352 QLKDNDLTGIAFIDTEVYIASMVSV-KNLILVGDYARSIALLRYQPEYRTLSLVARDYK-PTQ-PNSKGYYAGNPSRGII 428 (638)
Q Consensus 352 ~l~~~~L~~~a~~d~~~~i~~i~~~-~~~IlvgD~~~Sv~ll~~~~~~~~l~~~arD~~-~~~-v~~~~~l~~~~~~~~v 428 (638)
++-+..+...-.++.++.-.+..-. .|..++.=+.+|-.+..|.. .+-..++.|.. ... +-++.+.
T Consensus 93 Dl~~gs~l~rirf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~--~~h~~Lp~d~d~dln~sas~~~f--------- 161 (405)
T KOG1273|consen 93 DLLKGSPLKRIRFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSD--PKHSVLPKDDDGDLNSSASHGVF--------- 161 (405)
T ss_pred eccCCCceeEEEccCccceeeeccccCCeEEEEEecCCcEEEEecC--CceeeccCCCccccccccccccc---------
Confidence 9998875543334444433333333 47777777777888888865 23333333322 222 2222232
Q ss_pred ccccceeeeeeccccccccccccCCcccccccCCCceeEEEEeCCCcEEEEEeCCCCcCCCCCceEEEEeeeecCc
Q psy92 429 DGSLVWKFLQLSLGERLEICKKIGSKHNDILDEFSSMGFMISDKDKNVVLFMYQPEARESNGGHRLIKKTDFHLGQ 504 (638)
Q Consensus 429 d~~~~~~~~~~~~gd~~~~~~r~~~~~~~~~~~~~~l~~l~aD~~~nl~v~~~~~~~~~s~~~~~L~~~~~f~lg~ 504 (638)
| | .++ ++++....|-|.+|... .|++++.|.+-.
T Consensus 162 d--------------r----------------~g~--yIitGtsKGkllv~~a~----------t~e~vas~rits 195 (405)
T KOG1273|consen 162 D--------------R----------------RGK--YIITGTSKGKLLVYDAE----------TLECVASFRITS 195 (405)
T ss_pred c--------------C----------------CCC--EEEEecCcceEEEEecc----------hheeeeeeeech
Confidence 4 0 122 68888888988888643 457788887765
No 17
>KOG1274|consensus
Probab=96.05 E-value=0.58 Score=54.83 Aligned_cols=122 Identities=21% Similarity=0.232 Sum_probs=78.5
Q ss_pred CCCccEEecccCCCCCCcEEEEE-cCCeEEEEEeCCCCC---CCCCceeEEEeCCCcccEEEEecCCCEEEEEEeeecCC
Q psy92 127 DGPVSTLAPFHNVNCPRGFLYFN-AKSELRISVLPTHLS---YDAPWPVRKVPLKCTPHFLAYHLETKTYCIVTSTAEPS 202 (638)
Q Consensus 127 ~~~v~~~a~F~~~~~~~gfl~~~-~~~~L~I~~l~~~~~---~~~~~~~r~ipL~~tp~ri~y~~~~~~~~V~~s~~~~~ 202 (638)
+.+|.++.=+.+ +-||++. .+|.++|-.+++..- +..-.+.-..-+..-..++++||.+.++++.+.+
T Consensus 138 ~apVl~l~~~p~----~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d---- 209 (933)
T KOG1274|consen 138 DAPVLQLSYDPK----GNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVD---- 209 (933)
T ss_pred CCceeeeeEcCC----CCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccC----
Confidence 356766643322 2255554 478999988886310 1111111112223446788999999999876532
Q ss_pred CcccccCCccccccCCCCCCCCCCCcccccEEEEEeCCCceeecceeecCCCceeEeEEEEEEeeccCccCCcccEEEEe
Q psy92 203 TDYYKFNGEDKELVTDPRDSRFIPPLVSQFHVSLFSPFSWEEIPQTNFPLHEWEHVLCLKNVSMEYEGTLSGLRGYIALG 282 (638)
Q Consensus 203 ~~~~~~~~e~~e~~~~~~~~~~~~p~~~~~~i~lid~~t~~~i~~~~~~l~~~E~v~si~~v~l~~~~~~~~~~~~ivVG 282 (638)
.+|++++..+|+. .|.|..++.-.-+..+.+.. .-.|||-|
T Consensus 210 -----------------------------~~Vkvy~r~~we~----~f~Lr~~~~ss~~~~~~wsP------nG~YiAAs 250 (933)
T KOG1274|consen 210 -----------------------------NTVKVYSRKGWEL----QFKLRDKLSSSKFSDLQWSP------NGKYIAAS 250 (933)
T ss_pred -----------------------------CeEEEEccCCcee----heeecccccccceEEEEEcC------CCcEEeee
Confidence 3589999999997 45666555544456666654 35999999
Q ss_pred ecccCCCCcccceeEEEEEEEE
Q psy92 283 TNYNYSEDVTCRGRILLFDIIE 304 (638)
Q Consensus 283 T~~~~~ed~~~~GrI~vf~i~~ 304 (638)
| ..|.|+||++..
T Consensus 251 ~---------~~g~I~vWnv~t 263 (933)
T KOG1274|consen 251 T---------LDGQILVWNVDT 263 (933)
T ss_pred c---------cCCcEEEEeccc
Confidence 9 899999999874
No 18
>KOG2110|consensus
Probab=95.62 E-value=1.1 Score=47.67 Aligned_cols=220 Identities=18% Similarity=0.271 Sum_probs=125.1
Q ss_pred EEEEEeCCCceeecceeecCC-CceeEeEEEEEEeeccCccCCcccEEEEeecccCCCCcccceeEEEEEEEEeecCCCC
Q psy92 233 HVSLFSPFSWEEIPQTNFPLH-EWEHVLCLKNVSMEYEGTLSGLRGYIALGTNYNYSEDVTCRGRILLFDIIEVVPEPGQ 311 (638)
Q Consensus 233 ~i~lid~~t~~~i~~~~~~l~-~~E~v~si~~v~l~~~~~~~~~~~~ivVGT~~~~~ed~~~~GrI~vf~i~~vvpe~g~ 311 (638)
+|-++|-.+++.++ +++.- +|...+|.- ++.. ...|++.= +....|-+++|+...
T Consensus 107 ~IyIydI~~MklLh--TI~t~~~n~~gl~Al--S~n~------~n~ylAyp-------~s~t~GdV~l~d~~n------- 162 (391)
T KOG2110|consen 107 SIYIYDIKDMKLLH--TIETTPPNPKGLCAL--SPNN------ANCYLAYP-------GSTTSGDVVLFDTIN------- 162 (391)
T ss_pred cEEEEecccceeeh--hhhccCCCccceEee--ccCC------CCceEEec-------CCCCCceEEEEEccc-------
Confidence 47778888888876 55544 666655542 2221 23566653 344699999999874
Q ss_pred ccccCceEEEEEE-eeCCceEEEc-cccCeeEEEe---cCEEEEEEeeCCceee---eEEeecceeEEEEee--ecCEEE
Q psy92 312 PLTKNKIKMIYAK-EQKGPVTAIC-HVAGFLVTAV---GQKIYIWQLKDNDLTG---IAFIDTEVYIASMVS--VKNLIL 381 (638)
Q Consensus 312 ~~t~~kLkl~~~~-~~~G~V~al~-~~~g~Ll~av---g~~l~v~~l~~~~L~~---~a~~d~~~~i~~i~~--~~~~Il 381 (638)
|+-+... ..+|++.||+ ..+|.++|.. |.-|+||...++++.- .... ++-|.+|.. ...++.
T Consensus 163 ------l~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~--~~~IySL~Fs~ds~~L~ 234 (391)
T KOG2110|consen 163 ------LQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTY--PVSIYSLSFSPDSQFLA 234 (391)
T ss_pred ------ceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCce--eeEEEEEEECCCCCeEE
Confidence 3433333 4589999997 6778887764 6678999998776431 1112 344555554 356888
Q ss_pred EeeccCcEEEEEEeccCC-----------eEEEE---eccCCCcceeeeecccCCCCCcccccccceeeeeecc-ccccc
Q psy92 382 VGDYARSIALLRYQPEYR-----------TLSLV---ARDYKPTQPNSKGYYAGNPSRGIIDGSLVWKFLQLSL-GERLE 446 (638)
Q Consensus 382 vgD~~~Sv~ll~~~~~~~-----------~l~~~---arD~~~~~v~~~~~l~~~~~~~~vd~~~~~~~~~~~~-gd~~~ 446 (638)
+.---+.|++++...... .+..+ +-.+.|.+|... + | ..-++.|+-+ +..+-
T Consensus 235 ~sS~TeTVHiFKL~~~~~~~~~~p~~~~~~~~~~sk~~~sylps~V~~~--~---------~--~~R~FAt~~l~~s~~~ 301 (391)
T KOG2110|consen 235 ASSNTETVHIFKLEKVSNNPPESPTAGTSWFGKVSKAATSYLPSQVSSV--L---------D--QSRKFATAKLPESGRK 301 (391)
T ss_pred EecCCCeEEEEEecccccCCCCCCCCCCcccchhhhhhhhhcchhhhhh--h---------h--hccceeEEEccCCCcc
Confidence 888889999999864311 01111 111333333322 1 2 2233444433 33333
Q ss_pred cccccCCcccccccCCCceeEEEEeCCCcEEEEEeCCCCcCCCCCceEEEEeeeecCcceee
Q psy92 447 ICKKIGSKHNDILDEFSSMGFMISDKDKNVVLFMYQPEARESNGGHRLIKKTDFHLGQHVNT 508 (638)
Q Consensus 447 ~~~r~~~~~~~~~~~~~~l~~l~aD~~~nl~v~~~~~~~~~s~~~~~L~~~~~f~lg~~v~~ 508 (638)
+...+.+.- ..+ .++++..+|+++.|..+|+ .+|.-.....++..|..-+.
T Consensus 302 ~~~~l~~~~-----~~~--~v~vas~dG~~y~y~l~~~----~gGec~lik~h~~~~~~~t~ 352 (391)
T KOG2110|consen 302 NICSLSSIQ-----KIP--RVLVASYDGHLYSYRLPPK----EGGECALIKRHFLDGSIDTS 352 (391)
T ss_pred ceEEeeccC-----CCC--EEEEEEcCCeEEEEEcCCC----CCceeEEEEeeccCCccccc
Confidence 322222110 122 4778889999999999985 23444444445555655443
No 19
>KOG0650|consensus
Probab=95.58 E-value=0.51 Score=52.97 Aligned_cols=210 Identities=17% Similarity=0.227 Sum_probs=116.3
Q ss_pred cCCeEEEEEeCCCCCCCCCceeEEEeCCCcccEEEEecCCCEEEEEEeeecCCCcc-cccCCccccccCCCCCCCCC-CC
Q psy92 150 AKSELRISVLPTHLSYDAPWPVRKVPLKCTPHFLAYHLETKTYCIVTSTAEPSTDY-YKFNGEDKELVTDPRDSRFI-PP 227 (638)
Q Consensus 150 ~~~~L~I~~l~~~~~~~~~~~~r~ipL~~tp~ri~y~~~~~~~~V~~s~~~~~~~~-~~~~~e~~e~~~~~~~~~~~-~p 227 (638)
.+|++||-.+-+ .--+|++++....++|++.|..+.-+++....+...-. +.+ ++.-+.. .-.+.+. .|
T Consensus 420 dDGtvriWEi~T------gRcvr~~~~d~~I~~vaw~P~~~~~vLAvA~~~~~~ivnp~~-G~~~e~~--~t~ell~~~~ 490 (733)
T KOG0650|consen 420 DDGTVRIWEIAT------GRCVRTVQFDSEIRSVAWNPLSDLCVLAVAVGECVLIVNPIF-GDRLEVG--PTKELLASAP 490 (733)
T ss_pred CCCcEEEEEeec------ceEEEEEeecceeEEEEecCCCCceeEEEEecCceEEeCccc-cchhhhc--chhhhhhcCC
Confidence 578899999887 46789999999999999999888777666543321000 011 2110100 0000000 01
Q ss_pred cccccEEEEEeCCCceeecceeecCCCceeEeEEEEEEeeccC--ccCCcccEEEEeecccCCCCcccceeEEEEEEEEe
Q psy92 228 LVSQFHVSLFSPFSWEEIPQTNFPLHEWEHVLCLKNVSMEYEG--TLSGLRGYIALGTNYNYSEDVTCRGRILLFDIIEV 305 (638)
Q Consensus 228 ~~~~~~i~lid~~t~~~i~~~~~~l~~~E~v~si~~v~l~~~~--~~~~~~~~ivVGT~~~~~ed~~~~GrI~vf~i~~v 305 (638)
....--. ...+|.. =.+++.|.-.|+.+..++.-. +-+++..||++-.+-. ..-+++|.++.+-
T Consensus 491 ~~~~p~~---~~~~W~~-----~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~------~~~~VliHQLSK~ 556 (733)
T KOG0650|consen 491 NESEPDA---AVVTWSR-----ASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDS------GNKSVLIHQLSKR 556 (733)
T ss_pred CccCCcc---cceeech-----hhhhhhccceEEEEecCCccceeeeecCCceEEEeccCC------CcceEEEEecccc
Confidence 0000000 1236653 233444444555554443221 1134567887644211 2347888887641
Q ss_pred ecCCCCccccCceEEEEEEeeCCceEEEc--cccCeeEEEecCEEEEEEeeCCceeeeEEeecceeEEEEee--ecCEEE
Q psy92 306 VPEPGQPLTKNKIKMIYAKEQKGPVTAIC--HVAGFLVTAVGQKIYIWQLKDNDLTGIAFIDTEVYIASMVS--VKNLIL 381 (638)
Q Consensus 306 vpe~g~~~t~~kLkl~~~~~~~G~V~al~--~~~g~Ll~avg~~l~v~~l~~~~L~~~a~~d~~~~i~~i~~--~~~~Il 381 (638)
..+.--..-+|-|.++. +..-+|++|....|+||+|-...|+++.. ...-.+.++.+ .|+-++
T Consensus 557 ------------~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq~~vRiYdL~kqelvKkL~-tg~kwiS~msihp~GDnli 623 (733)
T KOG0650|consen 557 ------------KSQSPFRKSKGLVQRVKFHPSKPYLFVATQRSVRIYDLSKQELVKKLL-TGSKWISSMSIHPNGDNLI 623 (733)
T ss_pred ------------cccCchhhcCCceeEEEecCCCceEEEEeccceEEEehhHHHHHHHHh-cCCeeeeeeeecCCCCeEE
Confidence 11222224467777764 66779999999999999998765544331 12223444444 468888
Q ss_pred EeeccCcEEEEEEe
Q psy92 382 VGDYARSIALLRYQ 395 (638)
Q Consensus 382 vgD~~~Sv~ll~~~ 395 (638)
+|-.-+-+..+-.+
T Consensus 624 ~gs~d~k~~WfDld 637 (733)
T KOG0650|consen 624 LGSYDKKMCWFDLD 637 (733)
T ss_pred EecCCCeeEEEEcc
Confidence 88887777666554
No 20
>KOG1446|consensus
Probab=95.17 E-value=4.9 Score=42.07 Aligned_cols=179 Identities=15% Similarity=0.187 Sum_probs=93.8
Q ss_pred CcEEEEEcCCeEEEEEeCCCCCCCCCceeEEEeCCCcccEEEEecCCCEEEEEEeeecC--C-------Cccc--ccCCc
Q psy92 143 RGFLYFNAKSELRISVLPTHLSYDAPWPVRKVPLKCTPHFLAYHLETKTYCIVTSTAEP--S-------TDYY--KFNGE 211 (638)
Q Consensus 143 ~gfl~~~~~~~L~I~~l~~~~~~~~~~~~r~ipL~~tp~ri~y~~~~~~~~V~~s~~~~--~-------~~~~--~~~~e 211 (638)
+.||..+-++++|+=.+-. +=+.--+++...| -.||.|+.=.|++++..... | .|+. .++.+
T Consensus 113 d~FlS~S~D~tvrLWDlR~------~~cqg~l~~~~~p-i~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~ 185 (311)
T KOG1446|consen 113 DTFLSSSLDKTVRLWDLRV------KKCQGLLNLSGRP-IAAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDN 185 (311)
T ss_pred CeEEecccCCeEEeeEecC------CCCceEEecCCCc-ceeECCCCcEEEEecCCCeEEEEEecccCCCCceeEccCCC
Confidence 5577765567777654442 1122233444433 47899987777777644211 0 0111 11111
Q ss_pred -ccccc--CCCCCCCCCCCcccccEEEEEeCCCceeecceeecCCCceeEeEEEEEEeeccCccCCcccEEEEeecccCC
Q psy92 212 -DKELV--TDPRDSRFIPPLVSQFHVSLFSPFSWEEIPQTNFPLHEWEHVLCLKNVSMEYEGTLSGLRGYIALGTNYNYS 288 (638)
Q Consensus 212 -~~e~~--~~~~~~~~~~p~~~~~~i~lid~~t~~~i~~~~~~l~~~E~v~si~~v~l~~~~~~~~~~~~ivVGT~~~~~ 288 (638)
+.|-. ...++-.+..-....+.+.++|.-+.+.+. +|+..+++--..+ .+.|.. ..+||+.|.
T Consensus 186 ~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~--tfs~~~~~~~~~~-~a~ftP------ds~Fvl~gs----- 251 (311)
T KOG1446|consen 186 DEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKS--TFSGYPNAGNLPL-SATFTP------DSKFVLSGS----- 251 (311)
T ss_pred CccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEee--eEeeccCCCCcce-eEEECC------CCcEEEEec-----
Confidence 11100 001111111222344678888888888776 6666665542222 122322 247777775
Q ss_pred CCcccceeEEEEEEEEeecCCCCccccCceEEEEEEeeCCceEEEccccCe--eEEEecCEEEEEEeeCCce
Q psy92 289 EDVTCRGRILLFDIIEVVPEPGQPLTKNKIKMIYAKEQKGPVTAICHVAGF--LVTAVGQKIYIWQLKDNDL 358 (638)
Q Consensus 289 ed~~~~GrI~vf~i~~vvpe~g~~~t~~kLkl~~~~~~~G~V~al~~~~g~--Ll~avg~~l~v~~l~~~~L 358 (638)
..|+|++|.+.. | +........--|+++++. |+-+ .+++..++|..|-....++
T Consensus 252 ----~dg~i~vw~~~t-----g------~~v~~~~~~~~~~~~~~~-fnP~~~mf~sa~s~l~fw~p~~~~~ 307 (311)
T KOG1446|consen 252 ----DDGTIHVWNLET-----G------KKVAVLRGPNGGPVSCVR-FNPRYAMFVSASSNLVFWLPDEDAL 307 (311)
T ss_pred ----CCCcEEEEEcCC-----C------cEeeEecCCCCCCccccc-cCCceeeeeecCceEEEEecccccc
Confidence 689999999842 2 222222222356777766 6653 5677788888887765544
No 21
>PTZ00420 coronin; Provisional
Probab=94.00 E-value=6.2 Score=45.52 Aligned_cols=158 Identities=14% Similarity=0.203 Sum_probs=84.0
Q ss_pred cceeEEEEEEEEeecCCCCccccCceEEEEEEeeCCceEEEc-cccCeeEEEe--cCEEEEEEeeCCceeee-EEeecce
Q psy92 293 CRGRILLFDIIEVVPEPGQPLTKNKIKMIYAKEQKGPVTAIC-HVAGFLVTAV--GQKIYIWQLKDNDLTGI-AFIDTEV 368 (638)
Q Consensus 293 ~~GrI~vf~i~~vvpe~g~~~t~~kLkl~~~~~~~G~V~al~-~~~g~Ll~av--g~~l~v~~l~~~~L~~~-a~~d~~~ 368 (638)
..|.|.+|++.. + + .++.....+.|++++ ..+|.++++. +.+|++|++...+.... ..+....
T Consensus 146 ~DgtIrIWDl~t-----g------~--~~~~i~~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~ 212 (568)
T PTZ00420 146 FDSFVNIWDIEN-----E------K--RAFQINMPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIHDGGK 212 (568)
T ss_pred CCCeEEEEECCC-----C------c--EEEEEecCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEecccCCc
Confidence 468999999853 1 1 112223457788886 3457766654 56899999987654321 1111111
Q ss_pred eEEEE-----eeecCEEEEeecc----CcEEEEEEeccCCeEEEEeccCCCcceeeeecccCCCCCcccccccceeeeee
Q psy92 369 YIASM-----VSVKNLILVGDYA----RSIALLRYQPEYRTLSLVARDYKPTQPNSKGYYAGNPSRGIIDGSLVWKFLQL 439 (638)
Q Consensus 369 ~i~~i-----~~~~~~IlvgD~~----~Sv~ll~~~~~~~~l~~~arD~~~~~v~~~~~l~~~~~~~~vd~~~~~~~~~~ 439 (638)
....+ ...+++|+.+-.- +.|.|...+....-+..+.-|..+-.++. + .|
T Consensus 213 ~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p--~---------~D---------- 271 (568)
T PTZ00420 213 NTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIP--H---------YD---------- 271 (568)
T ss_pred eeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEE--e---------ee----------
Confidence 11111 1234666654333 34666554432222322222322211111 1 12
Q ss_pred ccccccccccccCCcccccccCCCceeEEEEeCCCcEEEEEeCCCCcCCCCCceEEEEeeeecCcceeeEEEEe
Q psy92 440 SLGERLEICKKIGSKHNDILDEFSSMGFMISDKDKNVVLFMYQPEARESNGGHRLIKKTDFHLGQHVNTFFKIR 513 (638)
Q Consensus 440 ~~gd~~~~~~r~~~~~~~~~~~~~~l~~l~aD~~~nl~v~~~~~~~~~s~~~~~L~~~~~f~lg~~v~~~~~~~ 513 (638)
+++.+.++++-.++++++|++..+ .+....+|+.++.+..+.-.+
T Consensus 272 ---------------------~~tg~l~lsGkGD~tIr~~e~~~~--------~~~~l~~~~s~~p~~g~~f~P 316 (568)
T PTZ00420 272 ---------------------ESTGLIYLIGKGDGNCRYYQHSLG--------SIRKVNEYKSCSPFRSFGFLP 316 (568)
T ss_pred ---------------------CCCCCEEEEEECCCeEEEEEccCC--------cEEeecccccCCCccceEEcc
Confidence 133345888889999999998653 355566777767666665544
No 22
>KOG0318|consensus
Probab=93.98 E-value=4 Score=45.50 Aligned_cols=21 Identities=24% Similarity=0.589 Sum_probs=17.0
Q ss_pred cccEEEEeecccCCCCcccceeEEEEEEEE
Q psy92 275 LRGYIALGTNYNYSEDVTCRGRILLFDIIE 304 (638)
Q Consensus 275 ~~~~ivVGT~~~~~ed~~~~GrI~vf~i~~ 304 (638)
...|||+|- ..+.+.+|++.+
T Consensus 498 d~~yla~~D---------a~rkvv~yd~~s 518 (603)
T KOG0318|consen 498 DGAYLAAGD---------ASRKVVLYDVAS 518 (603)
T ss_pred CCcEEEEec---------cCCcEEEEEccc
Confidence 358999987 678899999864
No 23
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=93.90 E-value=10 Score=40.12 Aligned_cols=49 Identities=8% Similarity=0.106 Sum_probs=34.4
Q ss_pred EEEEE--cCCeEEEEEeCCCCCCCCCceeEEEeCCCcccEEEEecCCCEEEEEE
Q psy92 145 FLYFN--AKSELRISVLPTHLSYDAPWPVRKVPLKCTPHFLAYHLETKTYCIVT 196 (638)
Q Consensus 145 fl~~~--~~~~L~I~~l~~~~~~~~~~~~r~ipL~~tp~ri~y~~~~~~~~V~~ 196 (638)
++|++ .++.+++..+.+. +..-.+++++.+..|+.++++|..+.+.+++
T Consensus 3 ~~y~~~~~~~~I~~~~~~~~---g~l~~~~~~~~~~~~~~l~~spd~~~lyv~~ 53 (330)
T PRK11028 3 IVYIASPESQQIHVWNLNHE---GALTLLQVVDVPGQVQPMVISPDKRHLYVGV 53 (330)
T ss_pred EEEEEcCCCCCEEEEEECCC---CceeeeeEEecCCCCccEEECCCCCEEEEEE
Confidence 45665 3577788777532 2224567788888999999999988776654
No 24
>KOG0283|consensus
Probab=93.87 E-value=1.6 Score=50.78 Aligned_cols=138 Identities=17% Similarity=0.166 Sum_probs=85.1
Q ss_pred cEEEEEeCCCceeecceeecCCCceeEeEEEEEEeeccCccCCcccEEEEeecccCCCCcccceeEEEEEEEEeecCCCC
Q psy92 232 FHVSLFSPFSWEEIPQTNFPLHEWEHVLCLKNVSMEYEGTLSGLRGYIALGTNYNYSEDVTCRGRILLFDIIEVVPEPGQ 311 (638)
Q Consensus 232 ~~i~lid~~t~~~i~~~~~~l~~~E~v~si~~v~l~~~~~~~~~~~~ivVGT~~~~~ed~~~~GrI~vf~i~~vvpe~g~ 311 (638)
..+||-+-...++++ -.++. |.|++++.. . .-++.+||| -.|..++|+... -+
T Consensus 432 ~KvRiWsI~d~~Vv~--W~Dl~--~lITAvcy~---P------dGk~avIGt---------~~G~C~fY~t~~-----lk 484 (712)
T KOG0283|consen 432 GKVRLWSISDKKVVD--WNDLR--DLITAVCYS---P------DGKGAVIGT---------FNGYCRFYDTEG-----LK 484 (712)
T ss_pred cceEEeecCcCeeEe--ehhhh--hhheeEEec---c------CCceEEEEE---------eccEEEEEEccC-----Ce
Confidence 457777766666665 44555 678887642 2 248999999 889999998753 11
Q ss_pred ccccCceEEEEEEeeCC-ceEEEccccC---eeEEE-ecCEEEEEEeeCCcee--eeEEeecceeEE-EEeeecCEEEEe
Q psy92 312 PLTKNKIKMIYAKEQKG-PVTAICHVAG---FLVTA-VGQKIYIWQLKDNDLT--GIAFIDTEVYIA-SMVSVKNLILVG 383 (638)
Q Consensus 312 ~~t~~kLkl~~~~~~~G-~V~al~~~~g---~Ll~a-vg~~l~v~~l~~~~L~--~~a~~d~~~~i~-~i~~~~~~Ilvg 383 (638)
..+...+.+--.+..++ -||++.-+-| ++|+. .-++|+||+..+++|+ -+.|-.+.+.+. +....|.+|+.|
T Consensus 485 ~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~ 564 (712)
T KOG0283|consen 485 LVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSA 564 (712)
T ss_pred EEEeeeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEe
Confidence 11111122222233333 4888876533 45555 6679999999887753 334555555433 355678899999
Q ss_pred eccCcEEEEEEec
Q psy92 384 DYARSIALLRYQP 396 (638)
Q Consensus 384 D~~~Sv~ll~~~~ 396 (638)
-=-..|.+.+++.
T Consensus 565 seDs~VYiW~~~~ 577 (712)
T KOG0283|consen 565 SEDSWVYIWKNDS 577 (712)
T ss_pred ecCceEEEEeCCC
Confidence 8555666666644
No 25
>KOG0278|consensus
Probab=93.42 E-value=2.6 Score=42.90 Aligned_cols=92 Identities=18% Similarity=0.272 Sum_probs=65.7
Q ss_pred cccEEEEEeCCCceeecceeecCCCceeEeEEEEEEeeccCccCCcccEEEEeecccCCCCcccceeEEEEEEEEeecCC
Q psy92 230 SQFHVSLFSPFSWEEIPQTNFPLHEWEHVLCLKNVSMEYEGTLSGLRGYIALGTNYNYSEDVTCRGRILLFDIIEVVPEP 309 (638)
Q Consensus 230 ~~~~i~lid~~t~~~i~~~~~~l~~~E~v~si~~v~l~~~~~~~~~~~~ivVGT~~~~~ed~~~~GrI~vf~i~~vvpe~ 309 (638)
+.++|.+.|+++++.+- ++++.-+ +...+|.. +++++|-|- -.+.++.|+++.
T Consensus 203 ~gssV~Fwdaksf~~lK--s~k~P~n-----V~SASL~P------~k~~fVaGg---------ed~~~~kfDy~T----- 255 (334)
T KOG0278|consen 203 YGSSVKFWDAKSFGLLK--SYKMPCN-----VESASLHP------KKEFFVAGG---------EDFKVYKFDYNT----- 255 (334)
T ss_pred cCceeEEecccccccee--eccCccc-----cccccccC------CCceEEecC---------cceEEEEEeccC-----
Confidence 44689999999999886 6666643 44455643 457777775 467888888864
Q ss_pred CCccccCceEEEEEEeeCCceEEEccccCeeEEEecC---EEEEEEee
Q psy92 310 GQPLTKNKIKMIYAKEQKGPVTAICHVAGFLVTAVGQ---KIYIWQLK 354 (638)
Q Consensus 310 g~~~t~~kLkl~~~~~~~G~V~al~~~~g~Ll~avg~---~l~v~~l~ 354 (638)
...+.. |.+..-|||+|+.---+-.+.|+|+ +|++|+..
T Consensus 256 -----geEi~~-~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~ 297 (334)
T KOG0278|consen 256 -----GEEIGS-YNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTT 297 (334)
T ss_pred -----Cceeee-cccCCCCceEEEEECCCCceeeccCCCceEEEEEec
Confidence 122222 4456679999998666777888887 89999987
No 26
>KOG1897|consensus
Probab=93.38 E-value=6.7 Score=46.93 Aligned_cols=163 Identities=15% Similarity=0.178 Sum_probs=111.0
Q ss_pred CceEEEEEEeeC--CceEEEccc------cCeeEEEec-----------CEEEEEEeeC-CceeeeEEeecceeEEEEee
Q psy92 316 NKIKMIYAKEQK--GPVTAICHV------AGFLVTAVG-----------QKIYIWQLKD-NDLTGIAFIDTEVYIASMVS 375 (638)
Q Consensus 316 ~kLkl~~~~~~~--G~V~al~~~------~g~Ll~avg-----------~~l~v~~l~~-~~L~~~a~~d~~~~i~~i~~ 375 (638)
+.++.+|..+.. ..+.+++.. +-++++|.| .+|+||++.+ ++|..++.....--+.++..
T Consensus 758 nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Gav~aL~~ 837 (1096)
T KOG1897|consen 758 NTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGAVYALVE 837 (1096)
T ss_pred CceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeeccceeehhh
Confidence 567888877764 566666532 236777654 3678999997 88999998888888888889
Q ss_pred ecCEEEEeeccCcEEEEEEeccCCeEEEEeccCCCcceeeeecccCCCCCcccccccceeeeeeccccccccccccCCcc
Q psy92 376 VKNLILVGDYARSIALLRYQPEYRTLSLVARDYKPTQPNSKGYYAGNPSRGIIDGSLVWKFLQLSLGERLEICKKIGSKH 455 (638)
Q Consensus 376 ~~~~IlvgD~~~Sv~ll~~~~~~~~l~~~arD~~~~~v~~~~~l~~~~~~~~vd~~~~~~~~~~~~gd~~~~~~r~~~~~ 455 (638)
.++++++| +-.+|.++.|..+ +.|..-++-..+ ++++..- +.
T Consensus 838 fngkllA~-In~~vrLye~t~~-~eLr~e~~~~~~--~~aL~l~--------v~-------------------------- 879 (1096)
T KOG1897|consen 838 FNGKLLAG-INQSVRLYEWTTE-RELRIECNISNP--IIALDLQ--------VK-------------------------- 879 (1096)
T ss_pred hCCeEEEe-cCcEEEEEEcccc-ceehhhhcccCC--eEEEEEE--------ec--------------------------
Confidence 99998777 8999999999764 344443333333 3343221 22
Q ss_pred cccccCCCceeEEEEeCCCcEEEEEeCCCCcCCCCCceEEEEeeeecCcceeeEEEEeccCCCCCCCCCCCCceEEEEEe
Q psy92 456 NDILDEFSSMGFMISDKDKNVVLFMYQPEARESNGGHRLIKKTDFHLGQHVNTFFKIRCKPSSISDAPGARSRFLTWYAS 535 (638)
Q Consensus 456 ~~~~~~~~~l~~l~aD~~~nl~v~~~~~~~~~s~~~~~L~~~~~f~lg~~v~~~~~~~~~~~~~~~~~~~~~~~~il~~t 535 (638)
.| .++++|--+.+.+++|..+. ..++.++....+.-.++..... ....+.+.
T Consensus 880 -----gd---eI~VgDlm~Sitll~y~~~e------g~f~evArD~~p~Wmtaveil~--------------~d~ylgae 931 (1096)
T KOG1897|consen 880 -----GD---EIAVGDLMRSITLLQYKGDE------GNFEEVARDYNPNWMTAVEILD--------------DDTYLGAE 931 (1096)
T ss_pred -----Cc---EEEEeeccceEEEEEEeccC------CceEEeehhhCccceeeEEEec--------------CceEEeec
Confidence 13 59999999999999998741 2477777766666655543332 23466677
Q ss_pred CCCcEEEEE
Q psy92 536 LDGALGFFL 544 (638)
Q Consensus 536 ~~GsIg~l~ 544 (638)
..|-+..+.
T Consensus 932 ~~gNlf~v~ 940 (1096)
T KOG1897|consen 932 NSGNLFTVR 940 (1096)
T ss_pred ccccEEEEE
Confidence 777776654
No 27
>KOG0306|consensus
Probab=93.37 E-value=20 Score=41.89 Aligned_cols=149 Identities=18% Similarity=0.248 Sum_probs=91.3
Q ss_pred cEEEEEeCCCceeecceeecCCCceeEeEEEEEEeeccCccCCcccEEEEeecccCCCCcccceeEEEEEEEEeecCCCC
Q psy92 232 FHVSLFSPFSWEEIPQTNFPLHEWEHVLCLKNVSMEYEGTLSGLRGYIALGTNYNYSEDVTCRGRILLFDIIEVVPEPGQ 311 (638)
Q Consensus 232 ~~i~lid~~t~~~i~~~~~~l~~~E~v~si~~v~l~~~~~~~~~~~~ivVGT~~~~~ed~~~~GrI~vf~i~~vvpe~g~ 311 (638)
.++++-+-.+.+.|- +++ .++++|.+.| . ...||++|| ..|.|.+|++...
T Consensus 394 ~SikiWn~~t~kciR--Ti~---~~y~l~~~Fv--p-------gd~~Iv~G~---------k~Gel~vfdlaS~------ 444 (888)
T KOG0306|consen 394 ESIKIWNRDTLKCIR--TIT---CGYILASKFV--P-------GDRYIVLGT---------KNGELQVFDLASA------ 444 (888)
T ss_pred CcEEEEEccCcceeE--Eec---cccEEEEEec--C-------CCceEEEec---------cCCceEEEEeehh------
Confidence 467777776666553 232 2267776654 1 258999999 8999999999752
Q ss_pred ccccCceEEEEEEeeCCceEEEccc--c-CeeEEEecCEEEEEEee---C-----Cc---eeeeEEeecceeEEEEeee-
Q psy92 312 PLTKNKIKMIYAKEQKGPVTAICHV--A-GFLVTAVGQKIYIWQLK---D-----ND---LTGIAFIDTEVYIASMVSV- 376 (638)
Q Consensus 312 ~~t~~kLkl~~~~~~~G~V~al~~~--~-g~Ll~avg~~l~v~~l~---~-----~~---L~~~a~~d~~~~i~~i~~~- 376 (638)
.-++.+- ...|++-+|... + |.+.++.-++|.+|+++ + ++ |.....+++.--|.++.+-
T Consensus 445 ----~l~Eti~--AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Sp 518 (888)
T KOG0306|consen 445 ----SLVETIR--AHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSP 518 (888)
T ss_pred ----hhhhhhh--ccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcC
Confidence 1122221 346777777533 3 44555566788899886 2 12 2222345555555555544
Q ss_pred -cCEEEEeeccCcEEEEEEeccCCeEEEEeccCCCcceeeeec
Q psy92 377 -KNLILVGDYARSIALLRYQPEYRTLSLVARDYKPTQPNSKGY 418 (638)
Q Consensus 377 -~~~IlvgD~~~Sv~ll~~~~~~~~l~~~arD~~~~~v~~~~~ 418 (638)
+-+++||=+-.-|.++..+.-.-.+.+-+ +...|++++.
T Consensus 519 dgk~LaVsLLdnTVkVyflDtlKFflsLYG---HkLPV~smDI 558 (888)
T KOG0306|consen 519 DGKLLAVSLLDNTVKVYFLDTLKFFLSLYG---HKLPVLSMDI 558 (888)
T ss_pred CCcEEEEEeccCeEEEEEecceeeeeeecc---cccceeEEec
Confidence 77999998888888887665333444433 3566777655
No 28
>KOG0296|consensus
Probab=93.28 E-value=5.4 Score=42.63 Aligned_cols=100 Identities=17% Similarity=0.219 Sum_probs=66.7
Q ss_pred CceeEeEEEEEEeeccCccCCcccEEEEeecccCCCCcccceeEEEEEEEEeecCCCCccccCceEEEEEEeeCCceEEE
Q psy92 254 EWEHVLCLKNVSMEYEGTLSGLRGYIALGTNYNYSEDVTCRGRILLFDIIEVVPEPGQPLTKNKIKMIYAKEQKGPVTAI 333 (638)
Q Consensus 254 ~~E~v~si~~v~l~~~~~~~~~~~~ivVGT~~~~~ed~~~~GrI~vf~i~~vvpe~g~~~t~~kLkl~~~~~~~G~V~al 333 (638)
..+...|++...+.. .-+..++|. .-|+|.+|+.. +.++.|..+...+|+.|
T Consensus 282 ~e~~~esve~~~~ss------~lpL~A~G~---------vdG~i~iyD~a-------------~~~~R~~c~he~~V~~l 333 (399)
T KOG0296|consen 282 QEELDESVESIPSSS------KLPLAACGS---------VDGTIAIYDLA-------------ASTLRHICEHEDGVTKL 333 (399)
T ss_pred chhhhhhhhhccccc------ccchhhccc---------ccceEEEEecc-------------cchhheeccCCCceEEE
Confidence 344556666554432 457788886 78999999986 45556666777789999
Q ss_pred cccc-CeeEEE-ecCEEEEEEeeCCceeeeEE-eecceeEEEEeeecCEEE
Q psy92 334 CHVA-GFLVTA-VGQKIYIWQLKDNDLTGIAF-IDTEVYIASMVSVKNLIL 381 (638)
Q Consensus 334 ~~~~-g~Ll~a-vg~~l~v~~l~~~~L~~~a~-~d~~~~i~~i~~~~~~Il 381 (638)
.-.+ .+|++| .+.+|+.|+-+.++|.-... +..+++--.++..+++++
T Consensus 334 ~w~~t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~~~~~vv 384 (399)
T KOG0296|consen 334 KWLNTDYLLTACANGKVRQWDARTGQLKFTYTGHQMGILDFALSPQKRLVV 384 (399)
T ss_pred EEcCcchheeeccCceEEeeeccccceEEEEecCchheeEEEEcCCCcEEE
Confidence 8777 677666 67799999988888765443 233444444444555554
No 29
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=93.18 E-value=2.4 Score=46.69 Aligned_cols=116 Identities=15% Similarity=0.175 Sum_probs=63.8
Q ss_pred cEEEEEeCCCceeecce-----eecCCCceeEeEEEEEEeeccCccCCcccEEEEeecccCCCCcccceeEEEEEEEEee
Q psy92 232 FHVSLFSPFSWEEIPQT-----NFPLHEWEHVLCLKNVSMEYEGTLSGLRGYIALGTNYNYSEDVTCRGRILLFDIIEVV 306 (638)
Q Consensus 232 ~~i~lid~~t~~~i~~~-----~~~l~~~E~v~si~~v~l~~~~~~~~~~~~ivVGT~~~~~ed~~~~GrI~vf~i~~vv 306 (638)
+++-++|-..=.+|... ...-...++++|++..-+..+++. --..++.||| ..|.+++|.|..
T Consensus 107 G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~-ySSi~L~vGT---------n~G~v~~fkIlp-- 174 (395)
T PF08596_consen 107 GSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDG-YSSICLLVGT---------NSGNVLTFKILP-- 174 (395)
T ss_dssp SEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSS-SEEEEEEEEE---------TTSEEEEEEEEE--
T ss_pred CcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCc-ccceEEEEEe---------CCCCEEEEEEec--
Confidence 34566664433333311 122345678889887666554421 1458999999 779999999963
Q ss_pred cCCCCccccCceEEEEEE-eeCCceEEEcccc------------------------CeeEEEecCEEEEEEeeCCceeee
Q psy92 307 PEPGQPLTKNKIKMIYAK-EQKGPVTAICHVA------------------------GFLVTAVGQKIYIWQLKDNDLTGI 361 (638)
Q Consensus 307 pe~g~~~t~~kLkl~~~~-~~~G~V~al~~~~------------------------g~Ll~avg~~l~v~~l~~~~L~~~ 361 (638)
++++ .+..+..... ..+++|.+|+.++ |+++++.-+.++++.+.+.+...+
T Consensus 175 -~~~g---~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~~~~~~k~~~K 250 (395)
T PF08596_consen 175 -SSNG---RFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRVFKPPKSKGAHK 250 (395)
T ss_dssp --GGG----EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE-TT---EEEE
T ss_pred -CCCC---ceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEEEeCCCCcccce
Confidence 2222 3556666666 5678998888773 478888888999999987776666
Q ss_pred EE
Q psy92 362 AF 363 (638)
Q Consensus 362 a~ 363 (638)
.|
T Consensus 251 ~~ 252 (395)
T PF08596_consen 251 SF 252 (395)
T ss_dssp E-
T ss_pred ee
Confidence 65
No 30
>KOG0646|consensus
Probab=92.92 E-value=1.5 Score=47.94 Aligned_cols=70 Identities=20% Similarity=0.402 Sum_probs=46.9
Q ss_pred ceeEEEEEEEEeecCCCCccccCceEEEEEEeeCCceEEEccccC--eeEEE-ecCEEEEEEeeCCceeeeEEeecce-e
Q psy92 294 RGRILLFDIIEVVPEPGQPLTKNKIKMIYAKEQKGPVTAICHVAG--FLVTA-VGQKIYIWQLKDNDLTGIAFIDTEV-Y 369 (638)
Q Consensus 294 ~GrI~vf~i~~vvpe~g~~~t~~kLkl~~~~~~~G~V~al~~~~g--~Ll~a-vg~~l~v~~l~~~~L~~~a~~d~~~-~ 369 (638)
|=+|.+|++.+ +.......-..|+|+||...+. +|+++ +-.+||+|.+..+.|+.+- +.+. .
T Consensus 60 rp~l~vw~i~k------------~~~~~q~~v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~--~aHYQ~ 125 (476)
T KOG0646|consen 60 RPLLHVWEILK------------KDQVVQYIVLPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVL--SAHYQS 125 (476)
T ss_pred CccccccccCc------------hhhhhhhcccccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHH--Hhhccc
Confidence 33888888753 4444444556899999987764 56666 7789999999988876432 2222 3
Q ss_pred EEEEeeec
Q psy92 370 IASMVSVK 377 (638)
Q Consensus 370 i~~i~~~~ 377 (638)
|++|+..+
T Consensus 126 ITcL~fs~ 133 (476)
T KOG0646|consen 126 ITCLKFSD 133 (476)
T ss_pred eeEEEEeC
Confidence 56666543
No 31
>PLN00181 protein SPA1-RELATED; Provisional
Probab=92.74 E-value=28 Score=41.88 Aligned_cols=131 Identities=15% Similarity=0.203 Sum_probs=70.9
Q ss_pred cEEEEEeCCCceeecceeecCCCceeEeEEEEEEeeccCccCCcccEEEEeecccCCCCcccceeEEEEEEEEeecCCCC
Q psy92 232 FHVSLFSPFSWEEIPQTNFPLHEWEHVLCLKNVSMEYEGTLSGLRGYIALGTNYNYSEDVTCRGRILLFDIIEVVPEPGQ 311 (638)
Q Consensus 232 ~~i~lid~~t~~~i~~~~~~l~~~E~v~si~~v~l~~~~~~~~~~~~ivVGT~~~~~ed~~~~GrI~vf~i~~vvpe~g~ 311 (638)
+.+++.|-.+.+.+. .+.-.. ..|.|+ .+... ...+|+.|. ..|.|.+|++.. +
T Consensus 555 g~v~lWd~~~~~~~~--~~~~H~-~~V~~l---~~~p~-----~~~~L~Sgs---------~Dg~v~iWd~~~-----~- 608 (793)
T PLN00181 555 GVVQVWDVARSQLVT--EMKEHE-KRVWSI---DYSSA-----DPTLLASGS---------DDGSVKLWSINQ-----G- 608 (793)
T ss_pred CeEEEEECCCCeEEE--EecCCC-CCEEEE---EEcCC-----CCCEEEEEc---------CCCEEEEEECCC-----C-
Confidence 457888776666543 232222 234444 34321 236788776 678999999753 1
Q ss_pred ccccCceEEEEEEeeCCceEEEcc--ccCee-EEE-ecCEEEEEEeeCCceeeeEEeecceeEEEEee-ecCEEEEeecc
Q psy92 312 PLTKNKIKMIYAKEQKGPVTAICH--VAGFL-VTA-VGQKIYIWQLKDNDLTGIAFIDTEVYIASMVS-VKNLILVGDYA 386 (638)
Q Consensus 312 ~~t~~kLkl~~~~~~~G~V~al~~--~~g~L-l~a-vg~~l~v~~l~~~~L~~~a~~d~~~~i~~i~~-~~~~IlvgD~~ 386 (638)
..+. ....++.|.++.- -+|.+ ++| ....|++|++.+.+.....+..-...|.++.. .+++|+.|..-
T Consensus 609 ----~~~~---~~~~~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~~~~~lvs~s~D 681 (793)
T PLN00181 609 ----VSIG---TIKTKANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFVDSSTLVSSSTD 681 (793)
T ss_pred ----cEEE---EEecCCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEeCCCEEEEEECC
Confidence 1222 2234567777753 23544 444 34489999997543211111111223445544 35778888777
Q ss_pred CcEEEEEEe
Q psy92 387 RSIALLRYQ 395 (638)
Q Consensus 387 ~Sv~ll~~~ 395 (638)
..|.++...
T Consensus 682 ~~ikiWd~~ 690 (793)
T PLN00181 682 NTLKLWDLS 690 (793)
T ss_pred CEEEEEeCC
Confidence 777776554
No 32
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=92.62 E-value=20 Score=39.84 Aligned_cols=190 Identities=16% Similarity=0.199 Sum_probs=110.7
Q ss_pred eEEEEEEeeccCccCCcccEEEEeecccCCCCcccceeEEEEEEEEeecCCCCccccCc-eEEEEEEeeCCceEEEcc--
Q psy92 259 LCLKNVSMEYEGTLSGLRGYIALGTNYNYSEDVTCRGRILLFDIIEVVPEPGQPLTKNK-IKMIYAKEQKGPVTAICH-- 335 (638)
Q Consensus 259 ~si~~v~l~~~~~~~~~~~~ivVGT~~~~~ed~~~~GrI~vf~i~~vvpe~g~~~t~~k-Lkl~~~~~~~G~V~al~~-- 335 (638)
-|+++..+.... ..+..|+||. -.|+|.+|+-.. + ..+ --++.+++.+.||-.|..
T Consensus 23 ~~l~v~~~~~~~---~~~d~IivGS---------~~G~LrIy~P~~-----~----~~~~~~lllE~~l~~PILqv~~G~ 81 (418)
T PF14727_consen 23 GSLCVGNLDNSP---SGSDKIIVGS---------YSGILRIYDPSG-----N----EFQPEDLLLETQLKDPILQVECGK 81 (418)
T ss_pred ceEEEEcccCCC---CCccEEEEec---------cccEEEEEccCC-----C----CCCCccEEEEEecCCcEEEEEecc
Confidence 466666665432 2579999998 899999997421 1 112 257889999999999962
Q ss_pred c----cCeeEEE-ecCEEEEEEee--CC--------ceeeeEEeecceeEEEEee------e-cCEEEEeeccCcEEEEE
Q psy92 336 V----AGFLVTA-VGQKIYIWQLK--DN--------DLTGIAFIDTEVYIASMVS------V-KNLILVGDYARSIALLR 393 (638)
Q Consensus 336 ~----~g~Ll~a-vg~~l~v~~l~--~~--------~L~~~a~~d~~~~i~~i~~------~-~~~IlvgD~~~Sv~ll~ 393 (638)
| +...||- -=.||.||.+. ++ +|...-.+.++-.+.++.. . .++|.|=.+--.++|+.
T Consensus 82 F~s~~~~~~LaVLhP~kl~vY~v~~~~g~~~~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~fe 161 (418)
T PF14727_consen 82 FVSGSEDLQLAVLHPRKLSVYSVSLVDGTVEHGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFE 161 (418)
T ss_pred ccCCCCcceEEEecCCEEEEEEEEecCCCcccCcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEe
Confidence 3 1223333 34589999884 11 2444333444444444432 1 36666655544555543
Q ss_pred EeccCCeEEEEeccCCCcceeeeecccCCCCCcccccccceeeeeeccccccccccccCCcccccccCCCceeEEEEeCC
Q psy92 394 YQPEYRTLSLVARDYKPTQPNSKGYYAGNPSRGIIDGSLVWKFLQLSLGERLEICKKIGSKHNDILDEFSSMGFMISDKD 473 (638)
Q Consensus 394 ~~~~~~~l~~~arD~~~~~v~~~~~l~~~~~~~~vd~~~~~~~~~~~~gd~~~~~~r~~~~~~~~~~~~~~l~~l~aD~~ 473 (638)
. +.-.+...=-| || .||-+-| ++.. | +|+++...
T Consensus 162 q--e~~~f~~~lp~----------~l----lPgPl~Y--------------------~~~t-------D---sfvt~sss 195 (418)
T PF14727_consen 162 Q--ESFAFSRFLPD----------FL----LPGPLCY--------------------CPRT-------D---SFVTASSS 195 (418)
T ss_pred C--CcEEEEEEcCC----------CC----CCcCeEE--------------------eecC-------C---EEEEecCc
Confidence 2 11111111111 11 1222222 1111 3 68999888
Q ss_pred CcEEEEEeCCCCcCCC-------------CCceEEEEeeeecCcceeeEEEEecc
Q psy92 474 KNVVLFMYQPEARESN-------------GGHRLIKKTDFHLGQHVNTFFKIRCK 515 (638)
Q Consensus 474 ~nl~v~~~~~~~~~s~-------------~~~~L~~~~~f~lg~~v~~~~~~~~~ 515 (638)
..|..|+|+.-+..+. .+.++...=.|++||.|..+.-.+..
T Consensus 196 ~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~nlGE~~l~i~v~~~~ 250 (418)
T PF14727_consen 196 WTLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFNLGEQALDIQVVRFS 250 (418)
T ss_pred eeEEEecHHHhhhccccccccccccccccccccccceeEEECCceeEEEEEEEcC
Confidence 9999999865322222 46788889999999999998877653
No 33
>KOG0263|consensus
Probab=92.60 E-value=4.1 Score=47.23 Aligned_cols=175 Identities=18% Similarity=0.301 Sum_probs=93.0
Q ss_pred CCCeEEEEecCCceEEEecCCCCCccEEecccC--------CCCCCcEEEEEcCCeEEEEEeCCCCCCCCCceeEEEeCC
Q psy92 106 PHPAWLFLTSRGELRAHPMTIDGPVSTLAPFHN--------VNCPRGFLYFNAKSELRISVLPTHLSYDAPWPVRKVPLK 177 (638)
Q Consensus 106 ~~P~~i~~~~~~~l~~~pl~~~~~v~~~a~F~~--------~~~~~gfl~~~~~~~L~I~~l~~~~~~~~~~~~r~ipL~ 177 (638)
++..+|.++.++..|++.+... .++.-+.. .-+|.|+ ||++.+.=+.+++... |..-|.| |-.+
T Consensus 462 d~rfLlScSED~svRLWsl~t~---s~~V~y~GH~~PVwdV~F~P~Gy-YFatas~D~tArLWs~---d~~~PlR-ifag 533 (707)
T KOG0263|consen 462 DRRFLLSCSEDSSVRLWSLDTW---SCLVIYKGHLAPVWDVQFAPRGY-YFATASHDQTARLWST---DHNKPLR-IFAG 533 (707)
T ss_pred cccceeeccCCcceeeeecccc---eeEEEecCCCcceeeEEecCCce-EEEecCCCceeeeeec---ccCCchh-hhcc
Confidence 4556666666688888887532 22222211 1247774 5555444344555542 2223333 3333
Q ss_pred C--cccEEEEecCCCEEEEEEeeecCCCcccccCCccccccCCCCCCCCCCCcccccEEEEEeCCCceeecceeecCCCc
Q psy92 178 C--TPHFLAYHLETKTYCIVTSTAEPSTDYYKFNGEDKELVTDPRDSRFIPPLVSQFHVSLFSPFSWEEIPQTNFPLHEW 255 (638)
Q Consensus 178 ~--tp~ri~y~~~~~~~~V~~s~~~~~~~~~~~~~e~~e~~~~~~~~~~~~p~~~~~~i~lid~~t~~~i~~~~~~l~~~ 255 (638)
. ..+.+.|||.++-.+-+.++.. - ++ |. .....++|++...+-
T Consensus 534 hlsDV~cv~FHPNs~Y~aTGSsD~t--V---Rl---------WD--------v~~G~~VRiF~GH~~------------- 578 (707)
T KOG0263|consen 534 HLSDVDCVSFHPNSNYVATGSSDRT--V---RL---------WD--------VSTGNSVRIFTGHKG------------- 578 (707)
T ss_pred cccccceEEECCcccccccCCCCce--E---EE---------EE--------cCCCcEEEEecCCCC-------------
Confidence 2 5788999997655442211110 0 00 00 011234666644221
Q ss_pred eeEeEEEEEEeeccCccCCcccEEEEeecccCCCCcccceeEEEEEEEEeecCCCCccccCceEEEEEEeeCCceEEEc-
Q psy92 256 EHVLCLKNVSMEYEGTLSGLRGYIALGTNYNYSEDVTCRGRILLFDIIEVVPEPGQPLTKNKIKMIYAKEQKGPVTAIC- 334 (638)
Q Consensus 256 E~v~si~~v~l~~~~~~~~~~~~ivVGT~~~~~ed~~~~GrI~vf~i~~vvpe~g~~~t~~kLkl~~~~~~~G~V~al~- 334 (638)
.|+|+ .+.. ...|++-|- ..|+|.+|++.. | ..++.+- ..+|.|++|.
T Consensus 579 -~V~al---~~Sp------~Gr~LaSg~---------ed~~I~iWDl~~-----~-----~~v~~l~--~Ht~ti~SlsF 627 (707)
T KOG0263|consen 579 -PVTAL---AFSP------CGRYLASGD---------EDGLIKIWDLAN-----G-----SLVKQLK--GHTGTIYSLSF 627 (707)
T ss_pred -ceEEE---EEcC------CCceEeecc---------cCCcEEEEEcCC-----C-----cchhhhh--cccCceeEEEE
Confidence 13333 3322 257888886 789999999863 1 1222222 2289999997
Q ss_pred cccCeeEEE--ecCEEEEEEee
Q psy92 335 HVAGFLVTA--VGQKIYIWQLK 354 (638)
Q Consensus 335 ~~~g~Ll~a--vg~~l~v~~l~ 354 (638)
+..|.++|. .+++|.+|++.
T Consensus 628 S~dg~vLasgg~DnsV~lWD~~ 649 (707)
T KOG0263|consen 628 SRDGNVLASGGADNSVRLWDLT 649 (707)
T ss_pred ecCCCEEEecCCCCeEEEEEch
Confidence 566766555 55699999987
No 34
>KOG2106|consensus
Probab=92.58 E-value=21 Score=39.96 Aligned_cols=182 Identities=10% Similarity=0.151 Sum_probs=104.4
Q ss_pred EEEeCCCcccEEEEecCCCEEEEEEeeecCCCcccccCCccccccCCCCCCCCCCCcccccEEEEEeCCCceeecceeec
Q psy92 172 RKVPLKCTPHFLAYHLETKTYCIVTSTAEPSTDYYKFNGEDKELVTDPRDSRFIPPLVSQFHVSLFSPFSWEEIPQTNFP 251 (638)
Q Consensus 172 r~ipL~~tp~ri~y~~~~~~~~V~~s~~~~~~~~~~~~~e~~e~~~~~~~~~~~~p~~~~~~i~lid~~t~~~i~~~~~~ 251 (638)
-+.-+++..+.+.+||.. +.++++.. +..-++|-.+-+.+. +.
T Consensus 402 wt~~~~d~~~~~~fhpsg-~va~Gt~~---------------------------------G~w~V~d~e~~~lv~---~~ 444 (626)
T KOG2106|consen 402 WTKIIEDPAECADFHPSG-VVAVGTAT---------------------------------GRWFVLDTETQDLVT---IH 444 (626)
T ss_pred EEEEecCceeEeeccCcc-eEEEeecc---------------------------------ceEEEEecccceeEE---EE
Confidence 344477888899999976 66665532 123444544434332 23
Q ss_pred CCCceeEeEEEEEEeeccCccCCcccEEEEeecccCCCCcccceeEEEEEEEEeecCCCCccccCceEEEEEEeeCCceE
Q psy92 252 LHEWEHVLCLKNVSMEYEGTLSGLRGYIALGTNYNYSEDVTCRGRILLFDIIEVVPEPGQPLTKNKIKMIYAKEQKGPVT 331 (638)
Q Consensus 252 l~~~E~v~si~~v~l~~~~~~~~~~~~ivVGT~~~~~ed~~~~GrI~vf~i~~vvpe~g~~~t~~kLkl~~~~~~~G~V~ 331 (638)
-+ +|.+++|+ +.. .-.++|||+ -.+.||+|.+.+. .+|++.+-+... .|++
T Consensus 445 ~d-~~~ls~v~---ysp------~G~~lAvgs---------~d~~iyiy~Vs~~---------g~~y~r~~k~~g-s~it 495 (626)
T KOG2106|consen 445 TD-NEQLSVVR---YSP------DGAFLAVGS---------HDNHIYIYRVSAN---------GRKYSRVGKCSG-SPIT 495 (626)
T ss_pred ec-CCceEEEE---EcC------CCCEEEEec---------CCCeEEEEEECCC---------CcEEEEeeeecC-ceeE
Confidence 33 77776654 432 258999999 7789999999752 357776666666 8999
Q ss_pred EEc-cccCeeEEEec--CEEEEEEeeC-CceeeeEEeeccee------------------EEEEeeecCEEEEeeccCcE
Q psy92 332 AIC-HVAGFLVTAVG--QKIYIWQLKD-NDLTGIAFIDTEVY------------------IASMVSVKNLILVGDYARSI 389 (638)
Q Consensus 332 al~-~~~g~Ll~avg--~~l~v~~l~~-~~L~~~a~~d~~~~------------------i~~i~~~~~~IlvgD~~~Sv 389 (638)
+|. +.++..+.+.- -.|..|.-.. ++...+.-.+-.++ +++-.-.++++.+||..--|
T Consensus 496 hLDwS~Ds~~~~~~S~d~eiLyW~~~~~~~~ts~kDvkW~t~~c~lGF~v~g~s~~t~i~a~~rs~~~~~lA~gdd~g~v 575 (626)
T KOG2106|consen 496 HLDWSSDSQFLVSNSGDYEILYWKPSECKQITSVKDVKWATYTCTLGFEVFGGSDGTDINAVARSHCEKLLASGDDFGKV 575 (626)
T ss_pred EeeecCCCceEEeccCceEEEEEccccCcccceecceeeeeeEEEEEEEEecccCCchHHHhhhhhhhhhhhccccCceE
Confidence 996 44555555532 2455553321 11111111111111 11111246899999999999
Q ss_pred EEEEEeccCCeEEEEeccCCCcceeeeecc
Q psy92 390 ALLRYQPEYRTLSLVARDYKPTQPNSKGYY 419 (638)
Q Consensus 390 ~ll~~~~~~~~l~~~arD~~~~~v~~~~~l 419 (638)
.+++|-=...+-...---...+.++++.|+
T Consensus 576 ~lf~yPc~s~rA~~he~~ghs~~vt~V~Fl 605 (626)
T KOG2106|consen 576 HLFSYPCSSPRAPSHEYGGHSSHVTNVAFL 605 (626)
T ss_pred EEEccccCCCcccceeeccccceeEEEEEe
Confidence 999983221111111112345678999997
No 35
>KOG3881|consensus
Probab=92.34 E-value=2.3 Score=45.73 Aligned_cols=133 Identities=14% Similarity=0.138 Sum_probs=76.7
Q ss_pred eCCceEEEccccCeeEEEecC-EEEEEEee-----CCceeeeEEeecceeEE-EEeeecCEEEEeeccCcEEEE-EEecc
Q psy92 326 QKGPVTAICHVAGFLVTAVGQ-KIYIWQLK-----DNDLTGIAFIDTEVYIA-SMVSVKNLILVGDYARSIALL-RYQPE 397 (638)
Q Consensus 326 ~~G~V~al~~~~g~Ll~avg~-~l~v~~l~-----~~~L~~~a~~d~~~~i~-~i~~~~~~IlvgD~~~Sv~ll-~~~~~ 397 (638)
-.++|-.+...+|.|+.|+++ .+.+|..+ +..|...|... +.+.. .....+++++.|--.+ +-.+ -|+-+
T Consensus 104 ~~~~I~gl~~~dg~Litc~~sG~l~~~~~k~~d~hss~l~~la~g~-g~~~~r~~~~~p~Iva~GGke~-~n~lkiwdle 181 (412)
T KOG3881|consen 104 GTKSIKGLKLADGTLITCVSSGNLQVRHDKSGDLHSSKLIKLATGP-GLYDVRQTDTDPYIVATGGKEN-INELKIWDLE 181 (412)
T ss_pred ccccccchhhcCCEEEEEecCCcEEEEeccCCccccccceeeecCC-ceeeeccCCCCCceEecCchhc-ccceeeeecc
Confidence 457888899999999999877 78899888 44566655432 12211 1112234444443332 1111 23333
Q ss_pred CCeEEEEeccC--------CCcceeeeecccCCCCCcccccccceeeeeeccccccccccccCCcccccccCCCceeEEE
Q psy92 398 YRTLSLVARDY--------KPTQPNSKGYYAGNPSRGIIDGSLVWKFLQLSLGERLEICKKIGSKHNDILDEFSSMGFMI 469 (638)
Q Consensus 398 ~~~l~~~arD~--------~~~~v~~~~~l~~~~~~~~vd~~~~~~~~~~~~gd~~~~~~r~~~~~~~~~~~~~~l~~l~ 469 (638)
..+=+.-|+.. .|.|.+++.|| + .+..-.|+.
T Consensus 182 ~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl---------~-------------------------------g~~~~~fat 221 (412)
T KOG3881|consen 182 QSKQIWSAKNVPNDRLGLRVPVWITDIRFL---------E-------------------------------GSPNYKFAT 221 (412)
T ss_pred cceeeeeccCCCCccccceeeeeeccceec---------C-------------------------------CCCCceEEE
Confidence 33333334432 37899999998 3 011225888
Q ss_pred EeCCCcEEEEEeCCCCcCCCCCceEEEEeeeecCcceeeE
Q psy92 470 SDKDKNVVLFMYQPEARESNGGHRLIKKTDFHLGQHVNTF 509 (638)
Q Consensus 470 aD~~~nl~v~~~~~~~~~s~~~~~L~~~~~f~lg~~v~~~ 509 (638)
+-..+.+++|.-.++- .++++|-..+.+.+.
T Consensus 222 ~T~~hqvR~YDt~~qR---------RPV~~fd~~E~~is~ 252 (412)
T KOG3881|consen 222 ITRYHQVRLYDTRHQR---------RPVAQFDFLENPISS 252 (412)
T ss_pred EecceeEEEecCcccC---------cceeEeccccCccee
Confidence 8899999988654421 255666666655443
No 36
>KOG2111|consensus
Probab=92.32 E-value=17 Score=38.38 Aligned_cols=205 Identities=13% Similarity=0.190 Sum_probs=110.4
Q ss_pred EEEEcCCeEEEEEeCCCCCCCCCceeEEEeCCCcccEEEEecCCCEEEEEEeeecCCCcccccCCccccccCCCCCCCCC
Q psy92 146 LYFNAKSELRISVLPTHLSYDAPWPVRKVPLKCTPHFLAYHLETKTYCIVTSTAEPSTDYYKFNGEDKELVTDPRDSRFI 225 (638)
Q Consensus 146 l~~~~~~~L~I~~l~~~~~~~~~~~~r~ipL~~tp~ri~y~~~~~~~~V~~s~~~~~~~~~~~~~e~~e~~~~~~~~~~~ 225 (638)
.+++.+...||.++++. .....-+..+-|...-.++|- ++.++++..-.+
T Consensus 20 Fava~~~Gfriyn~~P~---ke~~~r~~~~~G~~~veMLfR--~N~laLVGGg~~------------------------- 69 (346)
T KOG2111|consen 20 FAVATDTGFRIYNCDPF---KESASRQFIDGGFKIVEMLFR--SNYLALVGGGSR------------------------- 69 (346)
T ss_pred EEEEecCceEEEecCch---hhhhhhccccCchhhhhHhhh--hceEEEecCCCC-------------------------
Confidence 44567889999999984 333444444444433344442 455554432111
Q ss_pred CCcccccEEEEEeCCCceeecceeecCCCceeEeEEEEEEeeccCccCCcccEEEEeecccCCCCcccceeEEEEEEEEe
Q psy92 226 PPLVSQFHVSLFSPFSWEEIPQTNFPLHEWEHVLCLKNVSMEYEGTLSGLRGYIALGTNYNYSEDVTCRGRILLFDIIEV 305 (638)
Q Consensus 226 ~p~~~~~~i~lid~~t~~~i~~~~~~l~~~E~v~si~~v~l~~~~~~~~~~~~ivVGT~~~~~ed~~~~GrI~vf~i~~v 305 (638)
|.-....+-+-|......+- +++|.. .++.|.|. +..|||=+ ..+|+||...+
T Consensus 70 -pky~pNkviIWDD~k~~~i~--el~f~~-----~I~~V~l~--------r~riVvvl----------~~~I~VytF~~- 122 (346)
T KOG2111|consen 70 -PKYPPNKVIIWDDLKERCII--ELSFNS-----EIKAVKLR--------RDRIVVVL----------ENKIYVYTFPD- 122 (346)
T ss_pred -CCCCCceEEEEecccCcEEE--EEEecc-----ceeeEEEc--------CCeEEEEe----------cCeEEEEEcCC-
Confidence 22223456666644333332 444443 23444553 45666654 67999999853
Q ss_pred ecCCCCccccCceEEEEEEee----CCceEEEcccc-CeeEEEecC---EEEEEEeeCCceeeeEEeec-ceeEEEEe-e
Q psy92 306 VPEPGQPLTKNKIKMIYAKEQ----KGPVTAICHVA-GFLVTAVGQ---KIYIWQLKDNDLTGIAFIDT-EVYIASMV-S 375 (638)
Q Consensus 306 vpe~g~~~t~~kLkl~~~~~~----~G~V~al~~~~-g~Ll~avg~---~l~v~~l~~~~L~~~a~~d~-~~~i~~i~-~ 375 (638)
.+|+++..+. || .-++|+.. ..++|.=|. .|.|-+|...+..+-.++.+ .+-|.++. .
T Consensus 123 -----------n~k~l~~~et~~NPkG-lC~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln 190 (346)
T KOG2111|consen 123 -----------NPKLLHVIETRSNPKG-LCSLCPTSNKSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALN 190 (346)
T ss_pred -----------ChhheeeeecccCCCc-eEeecCCCCceEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEc
Confidence 4666666654 34 44445444 457777666 46676666443321112211 12233322 1
Q ss_pred ecCEEEEeeccCcEEEEEEecc-CCeEEEEeccCCCcceeeeecc
Q psy92 376 VKNLILVGDYARSIALLRYQPE-YRTLSLVARDYKPTQPNSKGYY 419 (638)
Q Consensus 376 ~~~~IlvgD~~~Sv~ll~~~~~-~~~l~~~arD~~~~~v~~~~~l 419 (638)
..+..++.-.-+|--+=-|+.+ ...+.++-|-..+-.+.++.|=
T Consensus 191 ~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFS 235 (346)
T KOG2111|consen 191 LQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFS 235 (346)
T ss_pred CCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeC
Confidence 2233344445566655567765 4567888888888889998884
No 37
>KOG0283|consensus
Probab=91.87 E-value=5 Score=46.75 Aligned_cols=94 Identities=18% Similarity=0.260 Sum_probs=66.6
Q ss_pred EEEEEeCCCceeecceeecCCCceeEeEEEEEEeeccCccCCcccEEEEeecccCCCCcccceeEEEEEEEEeecCCCCc
Q psy92 233 HVSLFSPFSWEEIPQTNFPLHEWEHVLCLKNVSMEYEGTLSGLRGYIALGTNYNYSEDVTCRGRILLFDIIEVVPEPGQP 312 (638)
Q Consensus 233 ~i~lid~~t~~~i~~~~~~l~~~E~v~si~~v~l~~~~~~~~~~~~ivVGT~~~~~ed~~~~GrI~vf~i~~vvpe~g~~ 312 (638)
.++|-.+..-+.+. -|..++.|||++.--. ...|++=|. --|++.+|.|.+
T Consensus 391 TVRLWh~~~~~CL~----~F~HndfVTcVaFnPv--------DDryFiSGS---------LD~KvRiWsI~d-------- 441 (712)
T KOG0283|consen 391 TVRLWHPGRKECLK----VFSHNDFVTCVAFNPV--------DDRYFISGS---------LDGKVRLWSISD-------- 441 (712)
T ss_pred cEEeecCCCcceee----EEecCCeeEEEEeccc--------CCCcEeecc---------cccceEEeecCc--------
Confidence 47776666555443 3456678998764322 368999997 789999999864
Q ss_pred cccCceEEEEEEeeCCceEEEccc--cCeeEEE-ecCEEEEEEeeCCceee
Q psy92 313 LTKNKIKMIYAKEQKGPVTAICHV--AGFLVTA-VGQKIYIWQLKDNDLTG 360 (638)
Q Consensus 313 ~t~~kLkl~~~~~~~G~V~al~~~--~g~Ll~a-vg~~l~v~~l~~~~L~~ 360 (638)
-++++-.+++.-|||+|-. +.+.|+| ....+++|.-.+.+|..
T Consensus 442 -----~~Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~ 487 (712)
T KOG0283|consen 442 -----KKVVDWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVS 487 (712)
T ss_pred -----CeeEeehhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEE
Confidence 3567778899999999843 2344444 67789999988777654
No 38
>KOG0647|consensus
Probab=91.74 E-value=10 Score=39.75 Aligned_cols=92 Identities=15% Similarity=0.310 Sum_probs=69.9
Q ss_pred cceeEEEEEEEEeecCCCCccccCceEEEEEEeeCCceEEEccccCee--EEEecC---EEEEEEeeCCceeeeEEeecc
Q psy92 293 CRGRILLFDIIEVVPEPGQPLTKNKIKMIYAKEQKGPVTAICHVAGFL--VTAVGQ---KIYIWQLKDNDLTGIAFIDTE 367 (638)
Q Consensus 293 ~~GrI~vf~i~~vvpe~g~~~t~~kLkl~~~~~~~G~V~al~~~~g~L--l~avg~---~l~v~~l~~~~L~~~a~~d~~ 367 (638)
+.|.+.+|++.. .....+. ...+||.++.-++|++ +.+.|+ +|..|+.+.. .+++.+++|
T Consensus 92 ~Dk~~k~wDL~S-----------~Q~~~v~--~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~--~pv~t~~LP 156 (347)
T KOG0647|consen 92 CDKQAKLWDLAS-----------GQVSQVA--AHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSS--NPVATLQLP 156 (347)
T ss_pred cCCceEEEEccC-----------CCeeeee--ecccceeEEEEecCCCcceeEecccccceeecccCCC--Ceeeeeecc
Confidence 788999999865 2233333 4579999999888887 666666 7889988733 456667787
Q ss_pred eeEEEEeeecCEEEEeeccCcEEEEEEeccCC
Q psy92 368 VYIASMVSVKNLILVGDYARSIALLRYQPEYR 399 (638)
Q Consensus 368 ~~i~~i~~~~~~IlvgD~~~Sv~ll~~~~~~~ 399 (638)
--+-.+.+...+.+|+.+-++|.++..+..+.
T Consensus 157 eRvYa~Dv~~pm~vVata~r~i~vynL~n~~t 188 (347)
T KOG0647|consen 157 ERVYAADVLYPMAVVATAERHIAVYNLENPPT 188 (347)
T ss_pred ceeeehhccCceeEEEecCCcEEEEEcCCCcc
Confidence 77777888899999999999999988855433
No 39
>KOG0289|consensus
Probab=91.47 E-value=19 Score=39.45 Aligned_cols=99 Identities=21% Similarity=0.303 Sum_probs=57.2
Q ss_pred cEEEEEeCCCceeecceeecCCCceeEeEEEEEEeeccCccCCcccEEEEeecccCCCCcccceeEEEEEEEEeecCCCC
Q psy92 232 FHVSLFSPFSWEEIPQTNFPLHEWEHVLCLKNVSMEYEGTLSGLRGYIALGTNYNYSEDVTCRGRILLFDIIEVVPEPGQ 311 (638)
Q Consensus 232 ~~i~lid~~t~~~i~~~~~~l~~~E~v~si~~v~l~~~~~~~~~~~~ivVGT~~~~~ed~~~~GrI~vf~i~~vvpe~g~ 311 (638)
+.+++.|-.+-..+. .|.-+.. -++.+.|.. +.-|+|+++ -.|.+.+||+.+.
T Consensus 369 ~~vkiwdlks~~~~a--~Fpght~----~vk~i~FsE------NGY~Lat~a---------dd~~V~lwDLRKl------ 421 (506)
T KOG0289|consen 369 GVVKIWDLKSQTNVA--KFPGHTG----PVKAISFSE------NGYWLATAA---------DDGSVKLWDLRKL------ 421 (506)
T ss_pred ceEEEEEcCCccccc--cCCCCCC----ceeEEEecc------CceEEEEEe---------cCCeEEEEEehhh------
Confidence 456777655544333 3333222 356677753 236777776 5677999998752
Q ss_pred ccccCceEEEEEEeeCCceEEEc-cccCeeEEEecCEEEEEEeeC--CceeeeE
Q psy92 312 PLTKNKIKMIYAKEQKGPVTAIC-HVAGFLVTAVGQKIYIWQLKD--NDLTGIA 362 (638)
Q Consensus 312 ~~t~~kLkl~~~~~~~G~V~al~-~~~g~Ll~avg~~l~v~~l~~--~~L~~~a 362 (638)
..++.+.-.+.+ +|-+++ ...|.+++..|++|+||...+ +++..+.
T Consensus 422 ----~n~kt~~l~~~~-~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~ 470 (506)
T KOG0289|consen 422 ----KNFKTIQLDEKK-EVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIK 470 (506)
T ss_pred ----cccceeeccccc-cceeEEEcCCCCeEEeecceeEEEEEecccccceeee
Confidence 233333333333 455554 455666666699999998873 3454443
No 40
>KOG0282|consensus
Probab=90.98 E-value=6.2 Score=43.56 Aligned_cols=187 Identities=13% Similarity=0.169 Sum_probs=114.3
Q ss_pred CCCCcEEEEEcCCeEEEEEeCCCCCCCCCceeEEEeCCCcccEEEEecCC-CEEEEEEeeecCCCcccccCCccccccCC
Q psy92 140 NCPRGFLYFNAKSELRISVLPTHLSYDAPWPVRKVPLKCTPHFLAYHLET-KTYCIVTSTAEPSTDYYKFNGEDKELVTD 218 (638)
Q Consensus 140 ~~~~gfl~~~~~~~L~I~~l~~~~~~~~~~~~r~ipL~~tp~ri~y~~~~-~~~~V~~s~~~~~~~~~~~~~e~~e~~~~ 218 (638)
+|...|+...=+..|++--. +.+-...+..+++.|..+-+||.. +.|+++++..
T Consensus 268 ~~g~~fLS~sfD~~lKlwDt------ETG~~~~~f~~~~~~~cvkf~pd~~n~fl~G~sd~------------------- 322 (503)
T KOG0282|consen 268 NCGTSFLSASFDRFLKLWDT------ETGQVLSRFHLDKVPTCVKFHPDNQNIFLVGGSDK------------------- 322 (503)
T ss_pred ccCCeeeeeecceeeeeecc------ccceEEEEEecCCCceeeecCCCCCcEEEEecCCC-------------------
Confidence 35556666544566655443 346778889999999999999988 6777665432
Q ss_pred CCCCCCCCCcccccEEEEEeCCCceeecceeecCCCceeEeEEEEEEeeccCccCCcccEEEEeecccCCCCcccceeEE
Q psy92 219 PRDSRFIPPLVSQFHVSLFSPFSWEEIPQTNFPLHEWEHVLCLKNVSMEYEGTLSGLRGYIALGTNYNYSEDVTCRGRIL 298 (638)
Q Consensus 219 ~~~~~~~~p~~~~~~i~lid~~t~~~i~~~~~~l~~~E~v~si~~v~l~~~~~~~~~~~~ivVGT~~~~~ed~~~~GrI~ 298 (638)
.|+..|-.+-+++. +| .++.-|+..+.|-..+ .+++-.+ --+.++
T Consensus 323 --------------ki~~wDiRs~kvvq--eY----d~hLg~i~~i~F~~~g------~rFissS---------Ddks~r 367 (503)
T KOG0282|consen 323 --------------KIRQWDIRSGKVVQ--EY----DRHLGAILDITFVDEG------RRFISSS---------DDKSVR 367 (503)
T ss_pred --------------cEEEEeccchHHHH--HH----HhhhhheeeeEEccCC------ceEeeec---------cCccEE
Confidence 25555555555443 22 2344455555665422 3333222 344888
Q ss_pred EEEEEEeecCCCCccccCceEEEEEEee-CCceEEEccccCeeEEE-ecCEEEEEEeeCC-ceeeeE-E--eecceeEEE
Q psy92 299 LFDIIEVVPEPGQPLTKNKIKMIYAKEQ-KGPVTAICHVAGFLVTA-VGQKIYIWQLKDN-DLTGIA-F--IDTEVYIAS 372 (638)
Q Consensus 299 vf~i~~vvpe~g~~~t~~kLkl~~~~~~-~G~V~al~~~~g~Ll~a-vg~~l~v~~l~~~-~L~~~a-~--~d~~~~i~~ 372 (638)
+|+...- -.++++...++ .-|.-++.+..+.+++= +++.+.+|+.... ++.++. | +...-|.++
T Consensus 368 iWe~~~~----------v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~ 437 (503)
T KOG0282|consen 368 IWENRIP----------VPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQ 437 (503)
T ss_pred EEEcCCC----------ccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceee
Confidence 9987652 24555554443 45555555555544332 6889999886522 333222 2 345667777
Q ss_pred Eee--ecCEEEEeeccCcEEEEEEec
Q psy92 373 MVS--VKNLILVGDYARSIALLRYQP 396 (638)
Q Consensus 373 i~~--~~~~IlvgD~~~Sv~ll~~~~ 396 (638)
+.. .+.+++-||.--.+.++.|+.
T Consensus 438 v~fSpDG~~l~SGdsdG~v~~wdwkt 463 (503)
T KOG0282|consen 438 VDFSPDGRTLCSGDSDGKVNFWDWKT 463 (503)
T ss_pred EEEcCCCCeEEeecCCccEEEeechh
Confidence 665 478999999999999998875
No 41
>KOG0646|consensus
Probab=90.89 E-value=18 Score=39.83 Aligned_cols=106 Identities=15% Similarity=0.202 Sum_probs=69.0
Q ss_pred ccEEEEeecccCCCCcccceeEEEEEEEEeecCCCCccccCceEEEEEE-eeCCceEEEc-c---ccCeeEEE-ecCEEE
Q psy92 276 RGYIALGTNYNYSEDVTCRGRILLFDIIEVVPEPGQPLTKNKIKMIYAK-EQKGPVTAIC-H---VAGFLVTA-VGQKIY 349 (638)
Q Consensus 276 ~~~ivVGT~~~~~ed~~~~GrI~vf~i~~vvpe~g~~~t~~kLkl~~~~-~~~G~V~al~-~---~~g~Ll~a-vg~~l~ 349 (638)
..+|+=|. ..|++++|.+...|..... +..+-+|.- +..=+|+.+. + .+++|+.+ .-++++
T Consensus 135 gs~iiTgs---------kDg~V~vW~l~~lv~a~~~----~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k 201 (476)
T KOG0646|consen 135 GSHIITGS---------KDGAVLVWLLTDLVSADND----HSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIK 201 (476)
T ss_pred CcEEEecC---------CCccEEEEEEEeecccccC----CCccceeeeccCcceeEEEEecCCCccceEEEecCCceEE
Confidence 47777776 7899999999987654322 122323322 2345666663 2 44577766 567899
Q ss_pred EEEeeCCceeeeEEeecceeEEEEeeecCEEEEeeccCcEEEEEE
Q psy92 350 IWQLKDNDLTGIAFIDTEVYIASMVSVKNLILVGDYARSIALLRY 394 (638)
Q Consensus 350 v~~l~~~~L~~~a~~d~~~~i~~i~~~~~~IlvgD~~~Sv~ll~~ 394 (638)
+|++....|+....++.......+.-.+-.++||..--.+++.-|
T Consensus 202 ~wdlS~g~LLlti~fp~si~av~lDpae~~~yiGt~~G~I~~~~~ 246 (476)
T KOG0646|consen 202 LWDLSLGVLLLTITFPSSIKAVALDPAERVVYIGTEEGKIFQNLL 246 (476)
T ss_pred EEEeccceeeEEEecCCcceeEEEcccccEEEecCCcceEEeeeh
Confidence 999998877665555544444444445678888888877777665
No 42
>KOG1273|consensus
Probab=90.59 E-value=14 Score=38.91 Aligned_cols=171 Identities=14% Similarity=0.270 Sum_probs=93.8
Q ss_pred CceeEEEeCCCcccEEEEecCCCEEEEEEeeecCCC------ccc-ccC-CccccccCCCC------CCCCCCCcccccE
Q psy92 168 PWPVRKVPLKCTPHFLAYHLETKTYCIVTSTAEPST------DYY-KFN-GEDKELVTDPR------DSRFIPPLVSQFH 233 (638)
Q Consensus 168 ~~~~r~ipL~~tp~ri~y~~~~~~~~V~~s~~~~~~------~~~-~~~-~e~~e~~~~~~------~~~~~~p~~~~~~ 233 (638)
+-+.++|.+..-.-...|||....-+|++.-.+.-. +.. -++ ++++..+..+. --.+++.-..++-
T Consensus 97 gs~l~rirf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGk 176 (405)
T KOG1273|consen 97 GSPLKRIRFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGK 176 (405)
T ss_pred CCceeEEEccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcce
Confidence 458888999998899999998888888775433210 000 111 22222211111 0011111123467
Q ss_pred EEEEeCCCceeecceeecCCCceeEeEEEEEEeeccCccCCcccEEEEeecccCCCCcccceeEEEEEEEEeecCC--CC
Q psy92 234 VSLFSPFSWEEIPQTNFPLHEWEHVLCLKNVSMEYEGTLSGLRGYIALGTNYNYSEDVTCRGRILLFDIIEVVPEP--GQ 311 (638)
Q Consensus 234 i~lid~~t~~~i~~~~~~l~~~E~v~si~~v~l~~~~~~~~~~~~ivVGT~~~~~ed~~~~GrI~vf~i~~vvpe~--g~ 311 (638)
+.+++..|.+.+. ++.... +++++.+.+.. +..++++-| +.--|.+|++.+...+. +.
T Consensus 177 llv~~a~t~e~va--s~rits---~~~IK~I~~s~------~g~~liiNt---------sDRvIR~ye~~di~~~~r~~e 236 (405)
T KOG1273|consen 177 LLVYDAETLECVA--SFRITS---VQAIKQIIVSR------KGRFLIINT---------SDRVIRTYEISDIDDEGRDGE 236 (405)
T ss_pred EEEEecchheeee--eeeech---heeeeEEEEec------cCcEEEEec---------CCceEEEEehhhhcccCccCC
Confidence 8899998888876 444433 56677777753 468888888 44467788887542221 11
Q ss_pred ccccCceE-EEEEEeeCCceEEEccccCeeEEEec--CEEEEEEeeCCceee
Q psy92 312 PLTKNKIK-MIYAKEQKGPVTAICHVAGFLVTAVG--QKIYIWQLKDNDLTG 360 (638)
Q Consensus 312 ~~t~~kLk-l~~~~~~~G~V~al~~~~g~Ll~avg--~~l~v~~l~~~~L~~ 360 (638)
++..+|++ ++.+...+-.+++ +-+.|++++.- ..||||+-.-+.|++
T Consensus 237 ~e~~~K~qDvVNk~~Wk~ccfs--~dgeYv~a~s~~aHaLYIWE~~~GsLVK 286 (405)
T KOG1273|consen 237 VEPEHKLQDVVNKLQWKKCCFS--GDGEYVCAGSARAHALYIWEKSIGSLVK 286 (405)
T ss_pred cChhHHHHHHHhhhhhhheeec--CCccEEEeccccceeEEEEecCCcceee
Confidence 22234444 3444444443333 32335666542 268888766555544
No 43
>KOG0266|consensus
Probab=90.56 E-value=33 Score=38.40 Aligned_cols=113 Identities=16% Similarity=0.285 Sum_probs=64.1
Q ss_pred cceeEEEEEEEEeecCCCCccccCceEEEEEEeeCCceEEEc-cccCeeEEEec--CEEEEEEeeCCcee-eeEEeecce
Q psy92 293 CRGRILLFDIIEVVPEPGQPLTKNKIKMIYAKEQKGPVTAIC-HVAGFLVTAVG--QKIYIWQLKDNDLT-GIAFIDTEV 368 (638)
Q Consensus 293 ~~GrI~vf~i~~vvpe~g~~~t~~kLkl~~~~~~~G~V~al~-~~~g~Ll~avg--~~l~v~~l~~~~L~-~~a~~d~~~ 368 (638)
..+.|.+|++.+ ++ .-++.+ +....+|++++ .-.|.+++..+ .+|++|+++..++. ..+..+-++
T Consensus 223 ~D~tiriwd~~~----~~-----~~~~~l--~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~i 291 (456)
T KOG0266|consen 223 DDKTLRIWDLKD----DG-----RNLKTL--KGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGI 291 (456)
T ss_pred CCceEEEeeccC----CC-----eEEEEe--cCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCce
Confidence 678999999832 11 122222 25678889987 33455555443 38999999975543 333333333
Q ss_pred eEEEEeeecCEEEEeeccCcEEEEEEeccCCe---EEEEeccCCCcceeeeec
Q psy92 369 YIASMVSVKNLILVGDYARSIALLRYQPEYRT---LSLVARDYKPTQPNSKGY 418 (638)
Q Consensus 369 ~i~~i~~~~~~IlvgD~~~Sv~ll~~~~~~~~---l~~~arD~~~~~v~~~~~ 418 (638)
-..+....+++|+.|+...-+.+ |+..... +.++..+..+..++++.|
T Consensus 292 s~~~f~~d~~~l~s~s~d~~i~v--wd~~~~~~~~~~~~~~~~~~~~~~~~~f 342 (456)
T KOG0266|consen 292 SGLAFSPDGNLLVSASYDGTIRV--WDLETGSKLCLKLLSGAENSAPVTSVQF 342 (456)
T ss_pred EEEEECCCCCEEEEcCCCccEEE--EECCCCceeeeecccCCCCCCceeEEEE
Confidence 33444456789999966444444 4444444 234444444336677766
No 44
>KOG2321|consensus
Probab=90.46 E-value=5.4 Score=45.01 Aligned_cols=56 Identities=14% Similarity=0.262 Sum_probs=43.9
Q ss_pred CeeEEEecCEEEEEEeeCCc-eeeeEEeecceeEEEEeeecCEEEEeeccCcEEEEE
Q psy92 338 GFLVTAVGQKIYIWQLKDND-LTGIAFIDTEVYIASMVSVKNLILVGDYARSIALLR 393 (638)
Q Consensus 338 g~Ll~avg~~l~v~~l~~~~-L~~~a~~d~~~~i~~i~~~~~~IlvgD~~~Sv~ll~ 393 (638)
+.+++|.|..||=+.|+.++ |.+.+.--....+++|.....+|.+|.---.|-++-
T Consensus 147 Dly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwD 203 (703)
T KOG2321|consen 147 DLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWD 203 (703)
T ss_pred cEEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEec
Confidence 57888999999989998777 556554335667788888899999999888887753
No 45
>KOG2096|consensus
Probab=90.23 E-value=9.7 Score=40.20 Aligned_cols=65 Identities=11% Similarity=0.181 Sum_probs=45.2
Q ss_pred CccEEecccCCCCCCcEEEEEcCCeEEEEEeCCCCCCCCCceeEEEeCCCcccEEEEecCCCEEEEEEe
Q psy92 129 PVSTLAPFHNVNCPRGFLYFNAKSELRISVLPTHLSYDAPWPVRKVPLKCTPHFLAYHLETKTYCIVTS 197 (638)
Q Consensus 129 ~v~~~a~F~~~~~~~gfl~~~~~~~L~I~~l~~~~~~~~~~~~r~ipL~~tp~ri~y~~~~~~~~V~~s 197 (638)
.|+.++ |.+.. ..+.-.+.+..+||-.+.++..-+.+.--..+|++ +|.+++|.|+-+.++|.+-
T Consensus 88 ~vt~~~-FsSdG--K~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~d-hpT~V~FapDc~s~vv~~~ 152 (420)
T KOG2096|consen 88 EVTDVA-FSSDG--KKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYD-HPTRVVFAPDCKSVVVSVK 152 (420)
T ss_pred ceeeeE-EcCCC--ceeEEEeCCceEEEEecchhhhhhhhHhhccccCC-CceEEEECCCcceEEEEEc
Confidence 455553 54432 23455556888999998885433444555567777 8999999999999998885
No 46
>KOG0276|consensus
Probab=89.88 E-value=15 Score=41.96 Aligned_cols=151 Identities=15% Similarity=0.214 Sum_probs=96.4
Q ss_pred cEEEEEeCCCceeecceeecCCCceeEeEEEEEEeeccCccCCcccEEEEeecccCCCCcccceeEEEEEEEEeecCCCC
Q psy92 232 FHVSLFSPFSWEEIPQTNFPLHEWEHVLCLKNVSMEYEGTLSGLRGYIALGTNYNYSEDVTCRGRILLFDIIEVVPEPGQ 311 (638)
Q Consensus 232 ~~i~lid~~t~~~i~~~~~~l~~~E~v~si~~v~l~~~~~~~~~~~~ivVGT~~~~~ed~~~~GrI~vf~i~~vvpe~g~ 311 (638)
+.+++-+-.|...+- +|+..+ +-|-+ +.|- ++++-+++|. ..++|.||.+.
T Consensus 35 G~V~IWnyetqtmVk--sfeV~~-~PvRa---~kfi------aRknWiv~Gs---------DD~~IrVfnyn-------- 85 (794)
T KOG0276|consen 35 GDVQIWNYETQTMVK--SFEVSE-VPVRA---AKFI------ARKNWIVTGS---------DDMQIRVFNYN-------- 85 (794)
T ss_pred CeeEEEecccceeee--eeeecc-cchhh---heee------eccceEEEec---------CCceEEEEecc--------
Confidence 456666655544443 444332 12222 2231 3689999998 67899999885
Q ss_pred ccccCceEEEEEEee-CCceEEEc--cccCeeEEEecC-EEEEEEeeCCceeeeEEeecceeEEEEeee---cCEEEEee
Q psy92 312 PLTKNKIKMIYAKEQ-KGPVTAIC--HVAGFLVTAVGQ-KIYIWQLKDNDLTGIAFIDTEVYIASMVSV---KNLILVGD 384 (638)
Q Consensus 312 ~~t~~kLkl~~~~~~-~G~V~al~--~~~g~Ll~avg~-~l~v~~l~~~~L~~~a~~d~~~~i~~i~~~---~~~IlvgD 384 (638)
+++.++..+. ..-+.||+ +-.-+++.+.-. .|.+|+|+++-.....|---.-|+.++... .|..+-+-
T Consensus 86 -----t~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~s 160 (794)
T KOG0276|consen 86 -----TGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASAS 160 (794)
T ss_pred -----cceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeee
Confidence 3455555553 56677765 456678877665 788999986544444443445678777754 46778888
Q ss_pred ccCcEEEEEEeccCCeEEEEeccCCCcceeeeecc
Q psy92 385 YARSIALLRYQPEYRTLSLVARDYKPTQPNSKGYY 419 (638)
Q Consensus 385 ~~~Sv~ll~~~~~~~~l~~~arD~~~~~v~~~~~l 419 (638)
+-+.|-+..+-.....+++-| +.+.|.+++|+
T Consensus 161 LDrTVKVWslgs~~~nfTl~g---HekGVN~Vdyy 192 (794)
T KOG0276|consen 161 LDRTVKVWSLGSPHPNFTLEG---HEKGVNCVDYY 192 (794)
T ss_pred ccccEEEEEcCCCCCceeeec---cccCcceEEec
Confidence 888888888854444555544 45668888887
No 47
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=89.81 E-value=3.7 Score=36.83 Aligned_cols=67 Identities=15% Similarity=0.210 Sum_probs=47.7
Q ss_pred EeEEEEEEeeccCccCCcccEEEEeecccCCCCcccceeEEEEEEEEeecCCCCccccCceEEEEEEeeCCceEEEcccc
Q psy92 258 VLCLKNVSMEYEGTLSGLRGYIALGTNYNYSEDVTCRGRILLFDIIEVVPEPGQPLTKNKIKMIYAKEQKGPVTAICHVA 337 (638)
Q Consensus 258 v~si~~v~l~~~~~~~~~~~~ivVGT~~~~~ed~~~~GrI~vf~i~~vvpe~g~~~t~~kLkl~~~~~~~G~V~al~~~~ 337 (638)
|+||+.+.+... .+.-|+||| ....|.+|+=. .++++....+.|++|+.+.
T Consensus 2 V~al~~~d~d~d-----g~~eLlvGs---------~D~~IRvf~~~---------------e~~~Ei~e~~~v~~L~~~~ 52 (111)
T PF14783_consen 2 VTALCLFDFDGD-----GENELLVGS---------DDFEIRVFKGD---------------EIVAEITETDKVTSLCSLG 52 (111)
T ss_pred eeEEEEEecCCC-----CcceEEEec---------CCcEEEEEeCC---------------cEEEEEecccceEEEEEcC
Confidence 678888877653 368899999 55577788622 4677777789999999875
Q ss_pred C-eeEEE-ecCEEEEEEe
Q psy92 338 G-FLVTA-VGQKIYIWQL 353 (638)
Q Consensus 338 g-~Ll~a-vg~~l~v~~l 353 (638)
+ ++..| .+.+|-+|+-
T Consensus 53 ~~~F~Y~l~NGTVGvY~~ 70 (111)
T PF14783_consen 53 GGRFAYALANGTVGVYDR 70 (111)
T ss_pred CCEEEEEecCCEEEEEeC
Confidence 4 56666 4557777654
No 48
>KOG1034|consensus
Probab=89.66 E-value=5.7 Score=42.00 Aligned_cols=100 Identities=15% Similarity=0.227 Sum_probs=62.2
Q ss_pred cccEEEEeecccCCCCcccceeEEEEEEEEeecCCCCccccCceEEEEEEeeCCceEEEccccCe--eEEEe--cCEEEE
Q psy92 275 LRGYIALGTNYNYSEDVTCRGRILLFDIIEVVPEPGQPLTKNKIKMIYAKEQKGPVTAICHVAGF--LVTAV--GQKIYI 350 (638)
Q Consensus 275 ~~~~ivVGT~~~~~ed~~~~GrI~vf~i~~vvpe~g~~~t~~kLkl~~~~~~~G~V~al~~~~g~--Ll~av--g~~l~v 350 (638)
..+|+|+|- .+|-|+|+++.+. ++.- +-...-++|..|.....+ |+.+. -+.|++
T Consensus 104 ~~p~la~~G---------~~GvIrVid~~~~-----------~~~~-~~~ghG~sINeik~~p~~~qlvls~SkD~svRl 162 (385)
T KOG1034|consen 104 GNPFLAAGG---------YLGVIRVIDVVSG-----------QCSK-NYRGHGGSINEIKFHPDRPQLVLSASKDHSVRL 162 (385)
T ss_pred CCeeEEeec---------ceeEEEEEecchh-----------hhcc-ceeccCccchhhhcCCCCCcEEEEecCCceEEE
Confidence 479999987 8999999988751 1110 011234566666544443 54443 458999
Q ss_pred EEeeCCceeee-EEeec-ceeEEEE--eeecCEEEEeeccCcEEEEEEe
Q psy92 351 WQLKDNDLTGI-AFIDT-EVYIASM--VSVKNLILVGDYARSIALLRYQ 395 (638)
Q Consensus 351 ~~l~~~~L~~~-a~~d~-~~~i~~i--~~~~~~IlvgD~~~Sv~ll~~~ 395 (638)
|.++....+-+ +-... .--|.|+ ...+++|+-+-+-+|+.+.+..
T Consensus 163 wnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~ 211 (385)
T KOG1034|consen 163 WNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLN 211 (385)
T ss_pred EeccCCeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecC
Confidence 99986653311 11111 1223444 4568999999999999999886
No 49
>KOG0305|consensus
Probab=89.65 E-value=27 Score=39.40 Aligned_cols=98 Identities=21% Similarity=0.314 Sum_probs=64.4
Q ss_pred ccEEEEeecccCCCCcccceeEEEEEEEEeecCCCCccccCceEEEEEEeeCCceEEE--ccccCeeEEE-ecC---EEE
Q psy92 276 RGYIALGTNYNYSEDVTCRGRILLFDIIEVVPEPGQPLTKNKIKMIYAKEQKGPVTAI--CHVAGFLVTA-VGQ---KIY 349 (638)
Q Consensus 276 ~~~ivVGT~~~~~ed~~~~GrI~vf~i~~vvpe~g~~~t~~kLkl~~~~~~~G~V~al--~~~~g~Ll~a-vg~---~l~ 349 (638)
..+++-|- -..++.||+... .--+++-.+.+++|.|+ |+++.-|||. -|. .|+
T Consensus 313 ~~~lASGg---------nDN~~~Iwd~~~------------~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~ 371 (484)
T KOG0305|consen 313 GNQLASGG---------NDNVVFIWDGLS------------PEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIK 371 (484)
T ss_pred CCeeccCC---------CccceEeccCCC------------ccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEE
Confidence 46777665 456888888732 11134456788999998 6777666655 444 566
Q ss_pred EEEeeCCceeeeEEeecceeEEEEeeecC---EEE-EeeccCcEEEEEEec
Q psy92 350 IWQLKDNDLTGIAFIDTEVYIASMVSVKN---LIL-VGDYARSIALLRYQP 396 (638)
Q Consensus 350 v~~l~~~~L~~~a~~d~~~~i~~i~~~~~---~Il-vgD~~~Sv~ll~~~~ 396 (638)
+|+...++. +-..|+...|.+|.-.+. ++. .|....-|.+++|-.
T Consensus 372 fwn~~~g~~--i~~vdtgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps 420 (484)
T KOG0305|consen 372 FWNTNTGAR--IDSVDTGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPS 420 (484)
T ss_pred EEEcCCCcE--ecccccCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccc
Confidence 777664443 234688999999886553 333 677777888888843
No 50
>PTZ00420 coronin; Provisional
Probab=89.01 E-value=29 Score=40.19 Aligned_cols=148 Identities=10% Similarity=0.095 Sum_probs=76.8
Q ss_pred cCCeEEEEEeCCCCCCCCCceeEEEeCCCcccEEEEecCCCEEEEEEeeecCCCcccccCCccccccCCCCCCCCCCCcc
Q psy92 150 AKSELRISVLPTHLSYDAPWPVRKVPLKCTPHFLAYHLETKTYCIVTSTAEPSTDYYKFNGEDKELVTDPRDSRFIPPLV 229 (638)
Q Consensus 150 ~~~~L~I~~l~~~~~~~~~~~~r~ipL~~tp~ri~y~~~~~~~~V~~s~~~~~~~~~~~~~e~~e~~~~~~~~~~~~p~~ 229 (638)
.++.++|-.+... -.+..+.....+..+++++..+.++.++.
T Consensus 146 ~DgtIrIWDl~tg------~~~~~i~~~~~V~SlswspdG~lLat~s~-------------------------------- 187 (568)
T PTZ00420 146 FDSFVNIWDIENE------KRAFQINMPKKLSSLKWNIKGNLLSGTCV-------------------------------- 187 (568)
T ss_pred CCCeEEEEECCCC------cEEEEEecCCcEEEEEECCCCCEEEEEec--------------------------------
Confidence 4678887776652 23344555566888889888776654321
Q ss_pred cccEEEEEeCCCceeecceeecCCCcee-EeEEEEEEeeccCccCCcccEEEEeecccCCCCcccceeEEEEEEEEeecC
Q psy92 230 SQFHVSLFSPFSWEEIPQTNFPLHEWEH-VLCLKNVSMEYEGTLSGLRGYIALGTNYNYSEDVTCRGRILLFDIIEVVPE 308 (638)
Q Consensus 230 ~~~~i~lid~~t~~~i~~~~~~l~~~E~-v~si~~v~l~~~~~~~~~~~~ivVGT~~~~~ed~~~~GrI~vf~i~~vvpe 308 (638)
...++++|+.+.+.+. ++.-..+-. ..++....|.. ...+|+.+. +.. ...+.|.+|++...
T Consensus 188 -D~~IrIwD~Rsg~~i~--tl~gH~g~~~s~~v~~~~fs~------d~~~IlTtG-~d~----~~~R~VkLWDlr~~--- 250 (568)
T PTZ00420 188 -GKHMHIIDPRKQEIAS--SFHIHDGGKNTKNIWIDGLGG------DDNYILSTG-FSK----NNMREMKLWDLKNT--- 250 (568)
T ss_pred -CCEEEEEECCCCcEEE--EEecccCCceeEEEEeeeEcC------CCCEEEEEE-cCC----CCccEEEEEECCCC---
Confidence 1248899988887764 444333211 11111122211 234444332 211 13357999997631
Q ss_pred CCCccccCceEEEEEEeeCCceEEEcc----ccCe-eEEEec-CEEEEEEeeCCceeee
Q psy92 309 PGQPLTKNKIKMIYAKEQKGPVTAICH----VAGF-LVTAVG-QKIYIWQLKDNDLTGI 361 (638)
Q Consensus 309 ~g~~~t~~kLkl~~~~~~~G~V~al~~----~~g~-Ll~avg-~~l~v~~l~~~~L~~~ 361 (638)
++ .++....+.....|.. -.|. +++|-| ..|++|++..+.+...
T Consensus 251 -~~--------pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~~~~l 300 (568)
T PTZ00420 251 -TS--------ALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLGSIRKV 300 (568)
T ss_pred -CC--------ceEEEEecCCccceEEeeeCCCCCEEEEEECCCeEEEEEccCCcEEee
Confidence 11 2233344433333332 2354 445544 4899999986654433
No 51
>PTZ00421 coronin; Provisional
Probab=88.68 E-value=49 Score=37.64 Aligned_cols=62 Identities=18% Similarity=0.327 Sum_probs=39.1
Q ss_pred ccEEEEeecccCCCCcccceeEEEEEEEEeecCCCCccccCceEEEEEEeeCCceEEEc-cccCeeEEEe--cCEEEEEE
Q psy92 276 RGYIALGTNYNYSEDVTCRGRILLFDIIEVVPEPGQPLTKNKIKMIYAKEQKGPVTAIC-HVAGFLVTAV--GQKIYIWQ 352 (638)
Q Consensus 276 ~~~ivVGT~~~~~ed~~~~GrI~vf~i~~vvpe~g~~~t~~kLkl~~~~~~~G~V~al~-~~~g~Ll~av--g~~l~v~~ 352 (638)
..+++.|. ..|.|.+|++.. + ..+..+ ....++|++++ .-+|.++++. ..+|++|+
T Consensus 138 ~~iLaSgs---------~DgtVrIWDl~t-----g-----~~~~~l--~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD 196 (493)
T PTZ00421 138 MNVLASAG---------ADMVVNVWDVER-----G-----KAVEVI--KCHSDQITSLEWNLDGSLLCTTSKDKKLNIID 196 (493)
T ss_pred CCEEEEEe---------CCCEEEEEECCC-----C-----eEEEEE--cCCCCceEEEEEECCCCEEEEecCCCEEEEEE
Confidence 35777776 678999999753 1 111111 12457888886 3356665554 35899999
Q ss_pred eeCCce
Q psy92 353 LKDNDL 358 (638)
Q Consensus 353 l~~~~L 358 (638)
+.+.+.
T Consensus 197 ~rsg~~ 202 (493)
T PTZ00421 197 PRDGTI 202 (493)
T ss_pred CCCCcE
Confidence 987654
No 52
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=88.10 E-value=41 Score=36.07 Aligned_cols=102 Identities=19% Similarity=0.286 Sum_probs=64.5
Q ss_pred eeEEEEEEEEeecCCCCccccCceEEEEEEee---CCceEEEccccCeeEEE---ecCEEEEEEeeC--CceeeeEEee-
Q psy92 295 GRILLFDIIEVVPEPGQPLTKNKIKMIYAKEQ---KGPVTAICHVAGFLVTA---VGQKIYIWQLKD--NDLTGIAFID- 365 (638)
Q Consensus 295 GrI~vf~i~~vvpe~g~~~t~~kLkl~~~~~~---~G~V~al~~~~g~Ll~a---vg~~l~v~~l~~--~~L~~~a~~d- 365 (638)
=||.+|++.+ .+|+-...-.+ .||=+=+=+=+|+++.. .+++|.+|+... .++..+..++
T Consensus 167 Dri~~y~~~d-----------g~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~t 235 (346)
T COG2706 167 DRIFLYDLDD-----------GKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDT 235 (346)
T ss_pred ceEEEEEccc-----------CccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeecc
Confidence 3888998874 23433322222 34444444566765444 567999999885 3443322221
Q ss_pred ------c--ceeEEEEeeecCEEEEeeccC-cEEEEEEeccCCeEEEEecc
Q psy92 366 ------T--EVYIASMVSVKNLILVGDYAR-SIALLRYQPEYRTLSLVARD 407 (638)
Q Consensus 366 ------~--~~~i~~i~~~~~~IlvgD~~~-Sv~ll~~~~~~~~l~~~arD 407 (638)
- ..-...|+..|.|+++.+-.. ||++++.++...+|..++.-
T Consensus 236 lP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~ 286 (346)
T COG2706 236 LPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGIT 286 (346)
T ss_pred CccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEe
Confidence 1 223445566789999999765 99999999998999988763
No 53
>KOG4378|consensus
Probab=88.09 E-value=21 Score=39.89 Aligned_cols=92 Identities=13% Similarity=0.225 Sum_probs=58.6
Q ss_pred cceeEEEEEEEEeecCCCCccccCceEEEEEEeeCCceEE--EccccCeeEEEecC--EEEEEEeeCCceeeeEEeecce
Q psy92 293 CRGRILLFDIIEVVPEPGQPLTKNKIKMIYAKEQKGPVTA--ICHVAGFLVTAVGQ--KIYIWQLKDNDLTGIAFIDTEV 368 (638)
Q Consensus 293 ~~GrI~vf~i~~vvpe~g~~~t~~kLkl~~~~~~~G~V~a--l~~~~g~Ll~avg~--~l~v~~l~~~~L~~~a~~d~~~ 368 (638)
.+|-+.+||+.-. .-+.-+.+..+.|... +++.+..|++.+|- ||++|+.+.+++...-.++.|.
T Consensus 185 d~G~VtlwDv~g~-----------sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y~~Pl 253 (673)
T KOG4378|consen 185 DKGAVTLWDVQGM-----------SPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTYSHPL 253 (673)
T ss_pred cCCeEEEEeccCC-----------CcccchhhhccCCcCcceecCCccceEEEecccceEEEeecccccccceeeecCCc
Confidence 6899999998632 1222222233444444 45788999999885 8899999876655544456666
Q ss_pred eEEEEeeecCEEEEeeccCcEEEEEEe
Q psy92 369 YIASMVSVKNLILVGDYARSIALLRYQ 395 (638)
Q Consensus 369 ~i~~i~~~~~~IlvgD~~~Sv~ll~~~ 395 (638)
-.+...-.|-++++|...--|.++-.+
T Consensus 254 stvaf~~~G~~L~aG~s~G~~i~YD~R 280 (673)
T KOG4378|consen 254 STVAFSECGTYLCAGNSKGELIAYDMR 280 (673)
T ss_pred ceeeecCCceEEEeecCCceEEEEecc
Confidence 665555566666777666665555443
No 54
>KOG2111|consensus
Probab=88.06 E-value=22 Score=37.58 Aligned_cols=50 Identities=20% Similarity=0.395 Sum_probs=42.4
Q ss_pred ceeEEEEEEEEeecCCCCccccCceEEEEEEeeCCceEEEccccCeeEEEecCEEEEEEeeCC
Q psy92 294 RGRILLFDIIEVVPEPGQPLTKNKIKMIYAKEQKGPVTAICHVAGFLVTAVGQKIYIWQLKDN 356 (638)
Q Consensus 294 ~GrI~vf~i~~vvpe~g~~~t~~kLkl~~~~~~~G~V~al~~~~g~Ll~avg~~l~v~~l~~~ 356 (638)
.-.++||| + .|=+.+.+-+++++|.+++--.++|++..-++|+||.+.++
T Consensus 74 pNkviIWD--D-----------~k~~~i~el~f~~~I~~V~l~r~riVvvl~~~I~VytF~~n 123 (346)
T KOG2111|consen 74 PNKVIIWD--D-----------LKERCIIELSFNSEIKAVKLRRDRIVVVLENKIYVYTFPDN 123 (346)
T ss_pred CceEEEEe--c-----------ccCcEEEEEEeccceeeEEEcCCeEEEEecCeEEEEEcCCC
Confidence 45788887 2 35567778889999999999999999999999999999844
No 55
>KOG0282|consensus
Probab=87.94 E-value=3 Score=45.87 Aligned_cols=91 Identities=15% Similarity=0.281 Sum_probs=60.1
Q ss_pred cEEEEEeCCCceeecceeecCCCceeEeEEEEEEeeccCccCCcccEEEEeecccCCCCcccceeEEEEEEEEeecCCCC
Q psy92 232 FHVSLFSPFSWEEIPQTNFPLHEWEHVLCLKNVSMEYEGTLSGLRGYIALGTNYNYSEDVTCRGRILLFDIIEVVPEPGQ 311 (638)
Q Consensus 232 ~~i~lid~~t~~~i~~~~~~l~~~E~v~si~~v~l~~~~~~~~~~~~ivVGT~~~~~ed~~~~GrI~vf~i~~vvpe~g~ 311 (638)
..++|-|-.|.+++. .|..++.+.|++ |.-. ....++||+ +.|+|+-||+..
T Consensus 280 ~~lKlwDtETG~~~~----~f~~~~~~~cvk---f~pd-----~~n~fl~G~---------sd~ki~~wDiRs------- 331 (503)
T KOG0282|consen 280 RFLKLWDTETGQVLS----RFHLDKVPTCVK---FHPD-----NQNIFLVGG---------SDKKIRQWDIRS------- 331 (503)
T ss_pred eeeeeeccccceEEE----EEecCCCceeee---cCCC-----CCcEEEEec---------CCCcEEEEeccc-------
Confidence 468999988888764 455566777764 4432 257888999 899999999864
Q ss_pred ccccCceEEEEEEee-CCceEEEccc--cCeeEEEe-cCEEEEEEeeCC
Q psy92 312 PLTKNKIKMIYAKEQ-KGPVTAICHV--AGFLVTAV-GQKIYIWQLKDN 356 (638)
Q Consensus 312 ~~t~~kLkl~~~~~~-~G~V~al~~~--~g~Ll~av-g~~l~v~~l~~~ 356 (638)
.| ++.+... =|+|..|.=+ +-+++.+. -+.++||+++..
T Consensus 332 ----~k--vvqeYd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~ 374 (503)
T KOG0282|consen 332 ----GK--VVQEYDRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIP 374 (503)
T ss_pred ----hH--HHHHHHhhhhheeeeEEccCCceEeeeccCccEEEEEcCCC
Confidence 12 2332222 3677777644 33555554 458999999843
No 56
>KOG0299|consensus
Probab=87.58 E-value=4.2 Score=44.56 Aligned_cols=92 Identities=16% Similarity=0.287 Sum_probs=61.3
Q ss_pred ccEEEEeecccCCCCcccceeEEEEEEEEeecCCCCccccCceEEEEE-----EeeC--CceEEEccccCeeEEEecC--
Q psy92 276 RGYIALGTNYNYSEDVTCRGRILLFDIIEVVPEPGQPLTKNKIKMIYA-----KEQK--GPVTAICHVAGFLVTAVGQ-- 346 (638)
Q Consensus 276 ~~~ivVGT~~~~~ed~~~~GrI~vf~i~~vvpe~g~~~t~~kLkl~~~-----~~~~--G~V~al~~~~g~Ll~avg~-- 346 (638)
.+.+|.|. ..|.|.+|.+.+.-| . +--++-|- ..++ --|++|..+.|-=++|.|+
T Consensus 338 ~~HfvsGS---------dnG~IaLWs~~KKkp-----l--f~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~ 401 (479)
T KOG0299|consen 338 DEHFVSGS---------DNGSIALWSLLKKKP-----L--FTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWS 401 (479)
T ss_pred ccceeecc---------CCceEEEeeecccCc-----e--eEeeccccccCCccccccccceeeeEecccCceEEecCCC
Confidence 47888887 789999999875311 0 00001110 1122 2678887776655555555
Q ss_pred -EEEEEEeeCC--ceeeeEEeecceeEEEEeee--cCEEEEe
Q psy92 347 -KIYIWQLKDN--DLTGIAFIDTEVYIASMVSV--KNLILVG 383 (638)
Q Consensus 347 -~l~v~~l~~~--~L~~~a~~d~~~~i~~i~~~--~~~Ilvg 383 (638)
.|++|...++ ++.+...+.+.-+|++|... +.+|++|
T Consensus 402 G~vrLW~i~~g~r~i~~l~~ls~~GfVNsl~f~~sgk~ivag 443 (479)
T KOG0299|consen 402 GCVRLWKIEDGLRAINLLYSLSLVGFVNSLAFSNSGKRIVAG 443 (479)
T ss_pred CceEEEEecCCccccceeeecccccEEEEEEEccCCCEEEEe
Confidence 8999999977 68888878888899998843 5678887
No 57
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=87.33 E-value=45 Score=35.71 Aligned_cols=104 Identities=20% Similarity=0.277 Sum_probs=60.9
Q ss_pred ceeEEEEEEEEeecCCCCccccCceEEEEEEee--CCceEEEc-cccCeeEEEe---cCEEEEEEee--CCceeeeEEee
Q psy92 294 RGRILLFDIIEVVPEPGQPLTKNKIKMIYAKEQ--KGPVTAIC-HVAGFLVTAV---GQKIYIWQLK--DNDLTGIAFID 365 (638)
Q Consensus 294 ~GrI~vf~i~~vvpe~g~~~t~~kLkl~~~~~~--~G~V~al~-~~~g~Ll~av---g~~l~v~~l~--~~~L~~~a~~d 365 (638)
..+|++|++... ..+|+......+ -..+..+. .-+|+.+..+ .++|.+|++. +.+|..+....
T Consensus 165 ~D~v~~~~~~~~---------~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~ 235 (345)
T PF10282_consen 165 ADRVYVYDIDDD---------TGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTIS 235 (345)
T ss_dssp TTEEEEEEE-TT---------S-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEE
T ss_pred CCEEEEEEEeCC---------CceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEee
Confidence 458999998641 124655443333 22343333 3355444333 6689999998 44565555443
Q ss_pred cc-------eeEEEEeee--cCEEEEeeccC-cEEEEEEeccCCeEEEEec
Q psy92 366 TE-------VYIASMVSV--KNLILVGDYAR-SIALLRYQPEYRTLSLVAR 406 (638)
Q Consensus 366 ~~-------~~i~~i~~~--~~~IlvgD~~~-Sv~ll~~~~~~~~l~~~ar 406 (638)
+- .....|... +.+++|+.--. +|+++..+++..+|..+..
T Consensus 236 ~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~ 286 (345)
T PF10282_consen 236 TLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQT 286 (345)
T ss_dssp SCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEE
T ss_pred eccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEE
Confidence 21 144555544 78999988554 7999998777677776544
No 58
>KOG3881|consensus
Probab=87.25 E-value=1.7 Score=46.61 Aligned_cols=102 Identities=18% Similarity=0.284 Sum_probs=70.0
Q ss_pred cEEEEEeCCCceeecceeecCCCceeEeEEEEEEeeccCccCCcccEEEEeecccCCCCcccceeEEEEEEEEeecCCCC
Q psy92 232 FHVSLFSPFSWEEIPQTNFPLHEWEHVLCLKNVSMEYEGTLSGLRGYIALGTNYNYSEDVTCRGRILLFDIIEVVPEPGQ 311 (638)
Q Consensus 232 ~~i~lid~~t~~~i~~~~~~l~~~E~v~si~~v~l~~~~~~~~~~~~ivVGT~~~~~ed~~~~GrI~vf~i~~vvpe~g~ 311 (638)
+.++++|+.... -|..+|++.| .+++ .+.+.. ...+|.+|+ ++|.|-.||+..
T Consensus 226 hqvR~YDt~~qR-RPV~~fd~~E--~~is--~~~l~p------~gn~Iy~gn---------~~g~l~~FD~r~------- 278 (412)
T KOG3881|consen 226 HQVRLYDTRHQR-RPVAQFDFLE--NPIS--STGLTP------SGNFIYTGN---------TKGQLAKFDLRG------- 278 (412)
T ss_pred eeEEEecCcccC-cceeEecccc--Ccce--eeeecC------CCcEEEEec---------ccchhheecccC-------
Confidence 679999998543 2433666664 3433 333432 247799998 889999999863
Q ss_pred ccccCceEEEEEEeeCCceEEEccc-cCeeEEEecC--EEEEEEeeCCceeeeEEe
Q psy92 312 PLTKNKIKMIYAKEQKGPVTAICHV-AGFLVTAVGQ--KIYIWQLKDNDLTGIAFI 364 (638)
Q Consensus 312 ~~t~~kLkl~~~~~~~G~V~al~~~-~g~Ll~avg~--~l~v~~l~~~~L~~~a~~ 364 (638)
.|+-.+.-+.+.|++++|.-. ++.+++.+|= -|+||+.+.++|+-.++.
T Consensus 279 ----~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kvYv 330 (412)
T KOG3881|consen 279 ----GKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVYV 330 (412)
T ss_pred ----ceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEeecccchhhhhhhh
Confidence 355555567789999999644 4577777765 688999998787765543
No 59
>KOG0315|consensus
Probab=87.23 E-value=38 Score=34.79 Aligned_cols=123 Identities=11% Similarity=0.133 Sum_probs=79.6
Q ss_pred cccEEEEeecccCCCCcccceeEEEEEEEEeecCCCCccccCceEEEEEEeeCCceEEEc-cccCeeEEEecC--EEEEE
Q psy92 275 LRGYIALGTNYNYSEDVTCRGRILLFDIIEVVPEPGQPLTKNKIKMIYAKEQKGPVTAIC-HVAGFLVTAVGQ--KIYIW 351 (638)
Q Consensus 275 ~~~~ivVGT~~~~~ed~~~~GrI~vf~i~~vvpe~g~~~t~~kLkl~~~~~~~G~V~al~-~~~g~Ll~avg~--~l~v~ 351 (638)
...-+++|+ -.|+|.+||+.+.. ..-+++- |..-+|++++ .-.|..++|+++ ++|+|
T Consensus 135 nQteLis~d---------qsg~irvWDl~~~~---------c~~~liP--e~~~~i~sl~v~~dgsml~a~nnkG~cyvW 194 (311)
T KOG0315|consen 135 NQTELISGD---------QSGNIRVWDLGENS---------CTHELIP--EDDTSIQSLTVMPDGSMLAAANNKGNCYVW 194 (311)
T ss_pred CcceEEeec---------CCCcEEEEEccCCc---------cccccCC--CCCcceeeEEEcCCCcEEEEecCCccEEEE
Confidence 357788898 78999999997620 1111111 2235677775 456778888777 58889
Q ss_pred EeeCC----ceeeeEEeec-ceeEEEEee--ecCEEEEeeccCcEEEEEEeccCCeEEEEeccCCCcceeeeecc
Q psy92 352 QLKDN----DLTGIAFIDT-EVYIASMVS--VKNLILVGDYARSIALLRYQPEYRTLSLVARDYKPTQPNSKGYY 419 (638)
Q Consensus 352 ~l~~~----~L~~~a~~d~-~~~i~~i~~--~~~~IlvgD~~~Sv~ll~~~~~~~~l~~~arD~~~~~v~~~~~l 419 (638)
++-.. .|.++--+.+ ..|+.+... .+.+|+.+-.-+-+-+..-+ .--+.+..-+...||+-.+.|-
T Consensus 195 ~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~--~~~kle~~l~gh~rWvWdc~FS 267 (311)
T KOG0315|consen 195 RLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTD--DFFKLELVLTGHQRWVWDCAFS 267 (311)
T ss_pred EccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecC--CceeeEEEeecCCceEEeeeec
Confidence 87633 3666665554 456776543 35677777777887776543 3323334446667999999995
No 60
>KOG0647|consensus
Probab=86.97 E-value=16 Score=38.30 Aligned_cols=113 Identities=16% Similarity=0.313 Sum_probs=70.0
Q ss_pred cceeEEEEEEEEeecCCCCccccCceEEEEEEeeCCceEEEccccC--ee-EEEecCEEEEEEeeCCceeeeEEeeccee
Q psy92 293 CRGRILLFDIIEVVPEPGQPLTKNKIKMIYAKEQKGPVTAICHVAG--FL-VTAVGQKIYIWQLKDNDLTGIAFIDTEVY 369 (638)
Q Consensus 293 ~~GrI~vf~i~~vvpe~g~~~t~~kLkl~~~~~~~G~V~al~~~~g--~L-l~avg~~l~v~~l~~~~L~~~a~~d~~~~ 369 (638)
=.|.+.+|++... |. +.--...+..|||.++|--++ ++ ..+.-..+.+|+|..+++..++-+|.++-
T Consensus 48 WD~tVR~wevq~~----g~------~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q~~~v~~Hd~pvk 117 (347)
T KOG0647|consen 48 WDGTVRIWEVQNS----GQ------LVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQVSQVAAHDAPVK 117 (347)
T ss_pred cCCceEEEEEecC----Cc------ccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCCCeeeeeeccccee
Confidence 5788999998651 22 222234467899999985543 33 33366689999999999999998888765
Q ss_pred EEEEeeecC--EEEEeeccCcEEEEEEeccCCeEEEEeccCCCcceeeeecc
Q psy92 370 IASMVSVKN--LILVGDYARSIALLRYQPEYRTLSLVARDYKPTQPNSKGYY 419 (638)
Q Consensus 370 i~~i~~~~~--~IlvgD~~~Sv~ll~~~~~~~~l~~~arD~~~~~v~~~~~l 419 (638)
.....--.+ .++-|---|.+-|.--+ .=.++++=.-|--|.+++.+
T Consensus 118 t~~wv~~~~~~cl~TGSWDKTlKfWD~R----~~~pv~t~~LPeRvYa~Dv~ 165 (347)
T KOG0647|consen 118 TCHWVPGMNYQCLVTGSWDKTLKFWDTR----SSNPVATLQLPERVYAADVL 165 (347)
T ss_pred EEEEecCCCcceeEecccccceeecccC----CCCeeeeeeccceeeehhcc
Confidence 544332223 45667667777664322 22233333344456666554
No 61
>KOG0315|consensus
Probab=86.74 E-value=21 Score=36.66 Aligned_cols=40 Identities=18% Similarity=0.223 Sum_probs=30.4
Q ss_pred CceEEE--ccccCeeEEEecCEEEEEEeeCCceeeeEEeecc
Q psy92 328 GPVTAI--CHVAGFLVTAVGQKIYIWQLKDNDLTGIAFIDTE 367 (638)
Q Consensus 328 G~V~al--~~~~g~Ll~avg~~l~v~~l~~~~L~~~a~~d~~ 367 (638)
+-|.+| ++-+++|.+|..++|++|++..++=.+++.++.+
T Consensus 41 sqVNrLeiTpdk~~LAaa~~qhvRlyD~~S~np~Pv~t~e~h 82 (311)
T KOG0315|consen 41 SQVNRLEITPDKKDLAAAGNQHVRLYDLNSNNPNPVATFEGH 82 (311)
T ss_pred cceeeEEEcCCcchhhhccCCeeEEEEccCCCCCceeEEecc
Confidence 444444 4566778899999999999997666688888765
No 62
>KOG1517|consensus
Probab=86.39 E-value=91 Score=38.27 Aligned_cols=190 Identities=13% Similarity=0.120 Sum_probs=116.0
Q ss_pred ceeEeEEEEEEeeccCccCCcccEEEEeecccCCCCcccceeEEEEEEEEeecCCCCccccCceEEEEEEe---------
Q psy92 255 WEHVLCLKNVSMEYEGTLSGLRGYIALGTNYNYSEDVTCRGRILLFDIIEVVPEPGQPLTKNKIKMIYAKE--------- 325 (638)
Q Consensus 255 ~E~v~si~~v~l~~~~~~~~~~~~ivVGT~~~~~ed~~~~GrI~vf~i~~vvpe~g~~~t~~kLkl~~~~~--------- 325 (638)
.-.|+.|+.++=. ...++++|+ +.|-|.+|+=-.. + ..|.+++..-.
T Consensus 1109 ~t~Vs~l~liNe~-------D~aLlLtas---------~dGvIRIwk~y~~-----~---~~~~eLVTaw~~Ls~~~~~~ 1164 (1387)
T KOG1517|consen 1109 DTRVSDLELINEQ-------DDALLLTAS---------SDGVIRIWKDYAD-----K---WKKPELVTAWSSLSDQLPGA 1164 (1387)
T ss_pred CCccceeeeeccc-------chhheeeec---------cCceEEEeccccc-----c---cCCceeEEeeccccccCccC
Confidence 3456666654321 357888888 8899999863221 0 13444443211
Q ss_pred -eCCceEEEccccCeeEEEecC-EEEEEEeeCCceeeeEEeecceeEEEEee---ecCEEEEeeccCcEEEEEEec-cCC
Q psy92 326 -QKGPVTAICHVAGFLVTAVGQ-KIYIWQLKDNDLTGIAFIDTEVYIASMVS---VKNLILVGDYARSIALLRYQP-EYR 399 (638)
Q Consensus 326 -~~G~V~al~~~~g~Ll~avg~-~l~v~~l~~~~L~~~a~~d~~~~i~~i~~---~~~~IlvgD~~~Sv~ll~~~~-~~~ 399 (638)
-.|.|+.=.+..|+|+++-+. .|+||+...+++..---+...+.+++++. .+|.|++|=.--||-++--+- .+.
T Consensus 1165 r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~d 1244 (1387)
T KOG1517|consen 1165 RGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPD 1244 (1387)
T ss_pred CCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCcc
Confidence 124666666778999887654 57899998766544222345677887773 479999998888888875442 244
Q ss_pred eEEEEeccCCCcc-eeeeecccCCCCCcccccccceeeeeeccccccccccccCCcccccccCCCceeEEEEeCCCcEEE
Q psy92 400 TLSLVARDYKPTQ-PNSKGYYAGNPSRGIIDGSLVWKFLQLSLGERLEICKKIGSKHNDILDEFSSMGFMISDKDKNVVL 478 (638)
Q Consensus 400 ~l~~~arD~~~~~-v~~~~~l~~~~~~~~vd~~~~~~~~~~~~gd~~~~~~r~~~~~~~~~~~~~~l~~l~aD~~~nl~v 478 (638)
.++.+-|-+.... +..+.+= -. + .+ .++.+-.+|.+.+
T Consensus 1245 s~v~~~R~h~~~~~Iv~~slq--------~~----------------------G--------~~---elvSgs~~G~I~~ 1283 (1387)
T KOG1517|consen 1245 SLVCVYREHNDVEPIVHLSLQ--------RQ----------------------G--------LG---ELVSGSQDGDIQL 1283 (1387)
T ss_pred ccceeecccCCcccceeEEee--------cC----------------------C--------Cc---ceeeeccCCeEEE
Confidence 5666666555432 4454441 00 0 01 3677778999988
Q ss_pred EEeCCCCcCCCCCceEEEEeeeecCcceeeEEEEe
Q psy92 479 FMYQPEARESNGGHRLIKKTDFHLGQHVNTFFKIR 513 (638)
Q Consensus 479 ~~~~~~~~~s~~~~~L~~~~~f~lg~~v~~~~~~~ 513 (638)
++..-. ....-+....+..-|.-.|.+...+
T Consensus 1284 ~DlR~~----~~e~~~~iv~~~~yGs~lTal~VH~ 1314 (1387)
T KOG1517|consen 1284 LDLRMS----SKETFLTIVAHWEYGSALTALTVHE 1314 (1387)
T ss_pred EecccC----cccccceeeeccccCccceeeeecc
Confidence 876542 1113455666777788778776654
No 63
>KOG0306|consensus
Probab=85.89 E-value=80 Score=37.18 Aligned_cols=118 Identities=16% Similarity=0.219 Sum_probs=73.1
Q ss_pred eEEEEEEEEeecCCCCccccCc-eEEEEEEe--eCCceEEEc-cccCeeEEE--ecCEEEEEEeeCCce-eeeEEeecce
Q psy92 296 RILLFDIIEVVPEPGQPLTKNK-IKMIYAKE--QKGPVTAIC-HVAGFLVTA--VGQKIYIWQLKDNDL-TGIAFIDTEV 368 (638)
Q Consensus 296 rI~vf~i~~vvpe~g~~~t~~k-Lkl~~~~~--~~G~V~al~-~~~g~Ll~a--vg~~l~v~~l~~~~L-~~~a~~d~~~ 368 (638)
.+..|+..-++.+|| |.+| |++.|.+. +..-|.|+. +-+|+++|. .++++.||-+++=++ +..--+.+|+
T Consensus 477 tVkfWdf~l~~~~~g---t~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV 553 (888)
T KOG0306|consen 477 TVKFWDFKLVVSVPG---TQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPV 553 (888)
T ss_pred EEEEEeEEEEeccCc---ccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeecccccce
Confidence 456666665555444 3334 77777654 567788875 334665544 689999998875432 1111123344
Q ss_pred eEEEEeeecCEEEEeeccCcEEEEEEeccCCeEEEEeccCCCcceeeeecc
Q psy92 369 YIASMVSVKNLILVGDYARSIALLRYQPEYRTLSLVARDYKPTQPNSKGYY 419 (638)
Q Consensus 369 ~i~~i~~~~~~IlvgD~~~Sv~ll~~~~~~~~l~~~arD~~~~~v~~~~~l 419 (638)
.-..|....++|+-|-+-|+|-+...+-..=.-+.+|.|- .|++++|+
T Consensus 554 ~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAHdD---Svm~V~F~ 601 (888)
T KOG0306|consen 554 LSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDD---SVMSVQFL 601 (888)
T ss_pred eEEeccCCcCeEEeccCCCceEEeccccchhhhhhhcccC---ceeEEEEc
Confidence 4444556678999999999999887664433445555443 37888897
No 64
>KOG2919|consensus
Probab=85.60 E-value=49 Score=35.23 Aligned_cols=137 Identities=13% Similarity=0.124 Sum_probs=72.0
Q ss_pred EEEEEeCCCceeecceeec-CCCceeEeEEEEEEeeccCccCCcccEEEEeecccCCCCcccceeEEEEEEEEeecCCCC
Q psy92 233 HVSLFSPFSWEEIPQTNFP-LHEWEHVLCLKNVSMEYEGTLSGLRGYIALGTNYNYSEDVTCRGRILLFDIIEVVPEPGQ 311 (638)
Q Consensus 233 ~i~lid~~t~~~i~~~~~~-l~~~E~v~si~~v~l~~~~~~~~~~~~ivVGT~~~~~ed~~~~GrI~vf~i~~vvpe~g~ 311 (638)
.|.+.|..+.+... +|. .+.-+.+++..++.|..+ -++|..| .+-.|.+|++.. ||+
T Consensus 134 PIh~wdaftG~lra--Sy~~ydh~de~taAhsL~Fs~D------GeqlfaG----------ykrcirvFdt~R----pGr 191 (406)
T KOG2919|consen 134 PIHLWDAFTGKLRA--SYRAYDHQDEYTAAHSLQFSPD------GEQLFAG----------YKRCIRVFDTSR----PGR 191 (406)
T ss_pred ceeeeecccccccc--chhhhhhHHhhhhheeEEecCC------CCeEeec----------ccceEEEeeccC----CCC
Confidence 47777776666543 332 223344566666677543 3666666 456899999854 343
Q ss_pred ccccCceEEEEEEeeCCceEEEc--cccCeeEE-E-ecCEEEEEEeeCCceeeeEEeecceeEEEEee------------
Q psy92 312 PLTKNKIKMIYAKEQKGPVTAIC--HVAGFLVT-A-VGQKIYIWQLKDNDLTGIAFIDTEVYIASMVS------------ 375 (638)
Q Consensus 312 ~~t~~kLkl~~~~~~~G~V~al~--~~~g~Ll~-a-vg~~l~v~~l~~~~L~~~a~~d~~~~i~~i~~------------ 375 (638)
-.....-+.-.+.-++|.+.+++ +.+-++++ + -|+.+-||...+......-+ .-.--|+.+..
T Consensus 192 ~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llg-gh~gGvThL~~~edGn~lfsGaR 270 (406)
T KOG2919|consen 192 DCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLG-GHGGGVTHLQWCEDGNKLFSGAR 270 (406)
T ss_pred CCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeec-ccCCCeeeEEeccCcCeeccccc
Confidence 11011111111334567666664 44544433 2 67888899887665322221 11223444442
Q ss_pred ecCEEEEeeccCcEEEE
Q psy92 376 VKNLILVGDYARSIALL 392 (638)
Q Consensus 376 ~~~~IlvgD~~~Sv~ll 392 (638)
..+.|++=|+++|...+
T Consensus 271 k~dkIl~WDiR~~~~pv 287 (406)
T KOG2919|consen 271 KDDKILCWDIRYSRDPV 287 (406)
T ss_pred CCCeEEEEeehhccchh
Confidence 23566777777665544
No 65
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=84.83 E-value=60 Score=34.77 Aligned_cols=117 Identities=15% Similarity=0.243 Sum_probs=75.3
Q ss_pred cceeEEEEEEEEeecCCCCccccCceEEEEEEee-----CC--ceEEEc-cccC-eeEEEe--cCEEEEEEee--CCcee
Q psy92 293 CRGRILLFDIIEVVPEPGQPLTKNKIKMIYAKEQ-----KG--PVTAIC-HVAG-FLVTAV--GQKIYIWQLK--DNDLT 359 (638)
Q Consensus 293 ~~GrI~vf~i~~vvpe~g~~~t~~kLkl~~~~~~-----~G--~V~al~-~~~g-~Ll~av--g~~l~v~~l~--~~~L~ 359 (638)
..+.|.+|++.. + +.+++.+..... .+ ...+|. .-+| +|.++. .+.|.+|++. +++|.
T Consensus 212 ~s~~v~v~~~~~---~------~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~ 282 (345)
T PF10282_consen 212 LSNTVSVFDYDP---S------DGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLT 282 (345)
T ss_dssp TTTEEEEEEEET---T------TTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEE
T ss_pred CCCcEEEEeecc---c------CCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceE
Confidence 577888888762 1 124554443332 22 244443 2234 555553 3489999995 45788
Q ss_pred eeEEeec-ceeEEEEee--ecCEEEEeeccC-cEEEEEEeccCCeEEEEeccCCCcceeeeec
Q psy92 360 GIAFIDT-EVYIASMVS--VKNLILVGDYAR-SIALLRYQPEYRTLSLVARDYKPTQPNSKGY 418 (638)
Q Consensus 360 ~~a~~d~-~~~i~~i~~--~~~~IlvgD~~~-Sv~ll~~~~~~~~l~~~arD~~~~~v~~~~~ 418 (638)
.+..+.+ ...+..+.. .+++++|+.... .|.+++.+++...|..+++...--..+|+.|
T Consensus 283 ~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l~~~~~~~~~~~p~ci~f 345 (345)
T PF10282_consen 283 LVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTGKLTPVGSSVPIPSPVCIVF 345 (345)
T ss_dssp EEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEEESSSEEEEEE
T ss_pred EEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCCcEEEecccccCCCCEEEeC
Confidence 8777766 445666665 689999998554 8999999988899999887655445555543
No 66
>KOG0290|consensus
Probab=84.33 E-value=15 Score=38.33 Aligned_cols=128 Identities=12% Similarity=0.147 Sum_probs=81.0
Q ss_pred cccEEEEeecccCCCCcccceeEEEEEEEEeecCCCCccccCceEEEEEEeeCCceEEEccc------cCeeEEEecCEE
Q psy92 275 LRGYIALGTNYNYSEDVTCRGRILLFDIIEVVPEPGQPLTKNKIKMIYAKEQKGPVTAICHV------AGFLVTAVGQKI 348 (638)
Q Consensus 275 ~~~~ivVGT~~~~~ed~~~~GrI~vf~i~~vvpe~g~~~t~~kLkl~~~~~~~G~V~al~~~------~g~Ll~avg~~l 348 (638)
.+.+|+||+-.. ..+-+|.+..+++. ...+......+..-|++.+--. .-.|||..|..|
T Consensus 58 ~~~rla~gS~~E-----e~~Nkvqiv~ld~~---------s~e~~~~a~fd~~YP~tK~~wiPd~~g~~pdlLATs~D~L 123 (364)
T KOG0290|consen 58 KKFRLAVGSFIE-----EYNNKVQIVQLDED---------SGELVEDANFDHPYPVTKLMWIPDSKGVYPDLLATSSDFL 123 (364)
T ss_pred cceeEEEeeecc-----ccCCeeEEEEEccC---------CCceeccCCCCCCCCccceEecCCccccCcchhhcccCeE
Confidence 578999998432 24567777777642 1233333335667788887533 236899999999
Q ss_pred EEEEee--CCceeeeEEe------ecceeEEEEe---eecCEEEEeeccCcEEEEEEecc-C--CeEEEEeccCCCccee
Q psy92 349 YIWQLK--DNDLTGIAFI------DTEVYIASMV---SVKNLILVGDYARSIALLRYQPE-Y--RTLSLVARDYKPTQPN 414 (638)
Q Consensus 349 ~v~~l~--~~~L~~~a~~------d~~~~i~~i~---~~~~~IlvgD~~~Sv~ll~~~~~-~--~~l~~~arD~~~~~v~ 414 (638)
++|..+ +.++...+.+ +.+..+||-. +..++|.+.-+-...++...... . -+-.++|.|- .|.
T Consensus 124 RlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDK---EV~ 200 (364)
T KOG0290|consen 124 RLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDK---EVY 200 (364)
T ss_pred EEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCc---cee
Confidence 999998 4455444432 2233445543 33578888777777777665443 1 2556778775 488
Q ss_pred eeecc
Q psy92 415 SKGYY 419 (638)
Q Consensus 415 ~~~~l 419 (638)
.+.|+
T Consensus 201 DIaf~ 205 (364)
T KOG0290|consen 201 DIAFL 205 (364)
T ss_pred EEEec
Confidence 88886
No 67
>KOG0649|consensus
Probab=84.17 E-value=2.3 Score=43.14 Aligned_cols=70 Identities=19% Similarity=0.431 Sum_probs=57.4
Q ss_pred CcccEEEEeecccCCCCcccceeEEEEEEEEeecCCCCccccCceEEEEEEeeCCceEEEccccCeeEEEecCEEEEEEe
Q psy92 274 GLRGYIALGTNYNYSEDVTCRGRILLFDIIEVVPEPGQPLTKNKIKMIYAKEQKGPVTAICHVAGFLVTAVGQKIYIWQL 353 (638)
Q Consensus 274 ~~~~~ivVGT~~~~~ed~~~~GrI~vf~i~~vvpe~g~~~t~~kLkl~~~~~~~G~V~al~~~~g~Ll~avg~~l~v~~l 353 (638)
+.+.|+++|. .-|.|-++.+.+.+.....| ..|++++.+...+||+|.+.-...+|+.|--..|+=|.|
T Consensus 20 p~~~~l~agn---------~~G~iav~sl~sl~s~sa~~--~gk~~iv~eqahdgpiy~~~f~d~~Lls~gdG~V~gw~W 88 (325)
T KOG0649|consen 20 PSKQYLFAGN---------LFGDIAVLSLKSLDSGSAEP--PGKLKIVPEQAHDGPIYYLAFHDDFLLSGGDGLVYGWEW 88 (325)
T ss_pred CcceEEEEec---------CCCeEEEEEehhhhccccCC--CCCcceeeccccCCCeeeeeeehhheeeccCceEEEeee
Confidence 4578999998 67899999998765544433 468889988888999999999999998887788888888
Q ss_pred e
Q psy92 354 K 354 (638)
Q Consensus 354 ~ 354 (638)
.
T Consensus 89 ~ 89 (325)
T KOG0649|consen 89 N 89 (325)
T ss_pred h
Confidence 7
No 68
>KOG2110|consensus
Probab=84.07 E-value=67 Score=34.71 Aligned_cols=77 Identities=17% Similarity=0.131 Sum_probs=51.3
Q ss_pred EEEEeeCCceEEEccccCeeEEEecCEEEEEEeeCCce-eeeEEee---cceeEEEEeeecCEEEEeeccCcEEEEEEec
Q psy92 321 IYAKEQKGPVTAICHVAGFLVTAVGQKIYIWQLKDNDL-TGIAFID---TEVYIASMVSVKNLILVGDYARSIALLRYQP 396 (638)
Q Consensus 321 ~~~~~~~G~V~al~~~~g~Ll~avg~~l~v~~l~~~~L-~~~a~~d---~~~~i~~i~~~~~~IlvgD~~~Sv~ll~~~~ 396 (638)
+++.-+..+|.++.--..+|+++.-.+||||++++=+| ..+..+. ....+.+...-+.++..=|...+=.++-|+.
T Consensus 81 ICe~~fpt~IL~VrmNr~RLvV~Lee~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~ 160 (391)
T KOG2110|consen 81 ICEIFFPTSILAVRMNRKRLVVCLEESIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDT 160 (391)
T ss_pred EEEEecCCceEEEEEccceEEEEEcccEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEc
Confidence 44445678888888888999999999999999987553 2332221 1133444444556777777777666666765
Q ss_pred c
Q psy92 397 E 397 (638)
Q Consensus 397 ~ 397 (638)
.
T Consensus 161 ~ 161 (391)
T KOG2110|consen 161 I 161 (391)
T ss_pred c
Confidence 4
No 69
>KOG0275|consensus
Probab=83.77 E-value=9.6 Score=40.14 Aligned_cols=84 Identities=18% Similarity=0.338 Sum_probs=53.6
Q ss_pred eecCCCceeEeEEEEEEeeccCccCCcccEEEEeecccCCCCcccceeEEEEEEEEeecCCCCccccCceEEEEEEe---
Q psy92 249 NFPLHEWEHVLCLKNVSMEYEGTLSGLRGYIALGTNYNYSEDVTCRGRILLFDIIEVVPEPGQPLTKNKIKMIYAKE--- 325 (638)
Q Consensus 249 ~~~l~~~E~v~si~~v~l~~~~~~~~~~~~ivVGT~~~~~ed~~~~GrI~vf~i~~vvpe~g~~~t~~kLkl~~~~~--- 325 (638)
.+.|..-.++.|. .|.. ..+|++-|. ..|.|-||++.. |+- +..||.-....
T Consensus 207 ~IKFg~KSh~EcA---~FSP------DgqyLvsgS---------vDGFiEVWny~~-----GKl--rKDLkYQAqd~fMM 261 (508)
T KOG0275|consen 207 SIKFGQKSHVECA---RFSP------DGQYLVSGS---------VDGFIEVWNYTT-----GKL--RKDLKYQAQDNFMM 261 (508)
T ss_pred heecccccchhhe---eeCC------CCceEeecc---------ccceeeeehhcc-----chh--hhhhhhhhhcceee
Confidence 3455555566654 4432 358999887 889999999875 332 22344444333
Q ss_pred eCCceEEEccccCe--eEEE-ecCEEEEEEeeCCc
Q psy92 326 QKGPVTAICHVAGF--LVTA-VGQKIYIWQLKDND 357 (638)
Q Consensus 326 ~~G~V~al~~~~g~--Ll~a-vg~~l~v~~l~~~~ 357 (638)
.+.||.||+--.+- |..+ +..||.||.+..++
T Consensus 262 md~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~ 296 (508)
T KOG0275|consen 262 MDDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQ 296 (508)
T ss_pred cccceEEEeecccHHHhhccCcCCcEEEEEEecch
Confidence 47899999855553 3332 44589999987554
No 70
>KOG0772|consensus
Probab=83.12 E-value=73 Score=35.92 Aligned_cols=91 Identities=21% Similarity=0.293 Sum_probs=46.3
Q ss_pred cceeEEEEEEEEeecCCCCccccCceEEEEEEeeC---CceEEEccc--cCeeEEE--ecCEEEEEEeeCCc-----eee
Q psy92 293 CRGRILLFDIIEVVPEPGQPLTKNKIKMIYAKEQK---GPVTAICHV--AGFLVTA--VGQKIYIWQLKDND-----LTG 360 (638)
Q Consensus 293 ~~GrI~vf~i~~vvpe~g~~~t~~kLkl~~~~~~~---G~V~al~~~--~g~Ll~a--vg~~l~v~~l~~~~-----L~~ 360 (638)
..|.+.+|++..- +..++++-.+... -+|+.+ .| .|.++|| ....|.+|+.+... .++
T Consensus 289 ~DgtlRiWdv~~~---------k~q~qVik~k~~~g~Rv~~tsC-~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk 358 (641)
T KOG0772|consen 289 YDGTLRIWDVNNT---------KSQLQVIKTKPAGGKRVPVTSC-AWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVK 358 (641)
T ss_pred CCCcEEEEecCCc---------hhheeEEeeccCCCcccCceee-ecCCCcchhhhcccCCceeeeecCCcccccceEee
Confidence 4688999998641 2234443333332 356654 34 3566544 45589999986332 233
Q ss_pred eEEeecceeEEEEee--ecCEEEEeeccCcEEEEEE
Q psy92 361 IAFIDTEVYIASMVS--VKNLILVGDYARSIALLRY 394 (638)
Q Consensus 361 ~a~~d~~~~i~~i~~--~~~~IlvgD~~~Sv~ll~~ 394 (638)
.|. .-+.-|++|.. .+++++-----.++-+.-.
T Consensus 359 ~AH-~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDL 393 (641)
T KOG0772|consen 359 DAH-LPGQDITSISFSYDGNYLLSRGFDDTLKVWDL 393 (641)
T ss_pred ecc-CCCCceeEEEeccccchhhhccCCCceeeeec
Confidence 332 22334666653 3555543333334444433
No 71
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=82.90 E-value=5.7 Score=39.79 Aligned_cols=62 Identities=23% Similarity=0.378 Sum_probs=42.1
Q ss_pred eeCCceEEE--ccccCeeEEEecCEEEEEEeeCCce--eeeEEee---------cceeEEEEeeecCEEEEeecc
Q psy92 325 EQKGPVTAI--CHVAGFLVTAVGQKIYIWQLKDNDL--TGIAFID---------TEVYIASMVSVKNLILVGDYA 386 (638)
Q Consensus 325 ~~~G~V~al--~~~~g~Ll~avg~~l~v~~l~~~~L--~~~a~~d---------~~~~i~~i~~~~~~IlvgD~~ 386 (638)
..+.++.+| |++.|.|++|.++++.+|.+..+.. ....|+| ....++.+...+++|++-+-.
T Consensus 132 Pl~~~p~ciaCC~~tG~LlVg~~~~l~lf~l~~~~~~~~~~~~lDFe~~l~~~~~~~~p~~v~ic~~yiA~~s~~ 206 (215)
T PF14761_consen 132 PLSEPPLCIACCPVTGNLLVGCGNKLVLFTLKYQTIQSEKFSFLDFERSLIDHIDNFKPTQVAICEGYIAVMSDL 206 (215)
T ss_pred cCCCCCCEEEecCCCCCEEEEcCCEEEEEEEEEEEEecccccEEechhhhhheecCceEEEEEEEeeEEEEecCC
Confidence 344455555 7999999999999999999983322 2233333 234567778888988775543
No 72
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=82.65 E-value=8.2 Score=43.95 Aligned_cols=60 Identities=23% Similarity=0.378 Sum_probs=45.4
Q ss_pred EeeCCceEEEcccc--CeeEEEecCEEEEEEee--CCceeeeEE---eecceeEEEEeee-cCEEEEe
Q psy92 324 KEQKGPVTAICHVA--GFLVTAVGQKIYIWQLK--DNDLTGIAF---IDTEVYIASMVSV-KNLILVG 383 (638)
Q Consensus 324 ~~~~G~V~al~~~~--g~Ll~avg~~l~v~~l~--~~~L~~~a~---~d~~~~i~~i~~~-~~~Ilvg 383 (638)
-...|-|+|-|--+ .+|++|+|+.++-|-|+ ++.|.+.+| +|...||.+|... +..|+|+
T Consensus 152 i~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~qKtL~~CsfcPVFdv~~~Icsi~AT~dsqVAva 219 (671)
T PF15390_consen 152 IKTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSAQKTLHRCSFCPVFDVGGYICSIEATVDSQVAVA 219 (671)
T ss_pred ccCCceEEEEEecCcCCEEEEEeCCeEEEEEecCchhhhhhCCcceeecCCCceEEEEEeccceEEEE
Confidence 36678999988654 38999999999888887 455887777 6888899988754 3455554
No 73
>KOG0278|consensus
Probab=82.51 E-value=22 Score=36.54 Aligned_cols=133 Identities=14% Similarity=0.186 Sum_probs=86.5
Q ss_pred cceeEEEEEEEEeecCCCCccccCceEEEEEEeeCCceEEEccc--cCeeEEEecCEEEEEEeeCCceeeeEEeecceeE
Q psy92 293 CRGRILLFDIIEVVPEPGQPLTKNKIKMIYAKEQKGPVTAICHV--AGFLVTAVGQKIYIWQLKDNDLTGIAFIDTEVYI 370 (638)
Q Consensus 293 ~~GrI~vf~i~~vvpe~g~~~t~~kLkl~~~~~~~G~V~al~~~--~g~Ll~avg~~l~v~~l~~~~L~~~a~~d~~~~i 370 (638)
..|-+.+|+... -+.+..-+++.+|+++.-. +..|.+|-|+.|..|+.+. |-.+..+++|+-|
T Consensus 163 dd~tVRLWD~rT-------------gt~v~sL~~~s~VtSlEvs~dG~ilTia~gssV~Fwdaks--f~~lKs~k~P~nV 227 (334)
T KOG0278|consen 163 DDKTVRLWDHRT-------------GTEVQSLEFNSPVTSLEVSQDGRILTIAYGSSVKFWDAKS--FGLLKSYKMPCNV 227 (334)
T ss_pred cCCceEEEEecc-------------CcEEEEEecCCCCcceeeccCCCEEEEecCceeEEecccc--ccceeeccCcccc
Confidence 345677887653 3467777899999999643 3467788999999998753 4444567888877
Q ss_pred EEEe--eecCEEEEeeccCcEEEEEEeccCC-eEEEE-eccCCCcceeeeecccCCCCCcccccccceeeeeeccccccc
Q psy92 371 ASMV--SVKNLILVGDYARSIALLRYQPEYR-TLSLV-ARDYKPTQPNSKGYYAGNPSRGIIDGSLVWKFLQLSLGERLE 446 (638)
Q Consensus 371 ~~i~--~~~~~IlvgD~~~Sv~ll~~~~~~~-~l~~~-arD~~~~~v~~~~~l~~~~~~~~vd~~~~~~~~~~~~gd~~~ 446 (638)
.+.+ -.+++.++|--+ .++++|+-... .+... .-.+. .|-|+.|- .|
T Consensus 228 ~SASL~P~k~~fVaGged--~~~~kfDy~TgeEi~~~nkgh~g--pVhcVrFS--------Pd----------------- 278 (334)
T KOG0278|consen 228 ESASLHPKKEFFVAGGED--FKVYKFDYNTGEEIGSYNKGHFG--PVHCVRFS--------PD----------------- 278 (334)
T ss_pred ccccccCCCceEEecCcc--eEEEEEeccCCceeeecccCCCC--ceEEEEEC--------CC-----------------
Confidence 7654 456777777543 45556654322 22221 22333 36667675 55
Q ss_pred cccccCCcccccccCCCceeEEEEeCCCcEEEEEeCCCCc
Q psy92 447 ICKKIGSKHNDILDEFSSMGFMISDKDKNVVLFMYQPEAR 486 (638)
Q Consensus 447 ~~~r~~~~~~~~~~~~~~l~~l~aD~~~nl~v~~~~~~~~ 486 (638)
+ . .+.....+|.|+++|..|..+
T Consensus 279 ---------------G-E-~yAsGSEDGTirlWQt~~~~~ 301 (334)
T KOG0278|consen 279 ---------------G-E-LYASGSEDGTIRLWQTTPGKT 301 (334)
T ss_pred ---------------C-c-eeeccCCCceEEEEEecCCCc
Confidence 2 2 355566899999999998654
No 74
>KOG0285|consensus
Probab=82.25 E-value=65 Score=34.75 Aligned_cols=61 Identities=20% Similarity=0.327 Sum_probs=41.3
Q ss_pred ccEEEEeecccCCCCcccceeEEEEEEEEeecCCCCccccCceEEEEEEeeCCce------EEEcc--ccCeeEEE-ecC
Q psy92 276 RGYIALGTNYNYSEDVTCRGRILLFDIIEVVPEPGQPLTKNKIKMIYAKEQKGPV------TAICH--VAGFLVTA-VGQ 346 (638)
Q Consensus 276 ~~~ivVGT~~~~~ed~~~~GrI~vf~i~~vvpe~g~~~t~~kLkl~~~~~~~G~V------~al~~--~~g~Ll~a-vg~ 346 (638)
..++++|. .+|-|..|+... .++++......+.|.+ +|.|- -+-+|+.| .+.
T Consensus 371 D~v~~~G~---------dng~~~fwdwks----------g~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rlit~eadK 431 (460)
T KOG0285|consen 371 DGVLVSGG---------DNGSIMFWDWKS----------GHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLITGEADK 431 (460)
T ss_pred CceEEEcC---------CceEEEEEecCc----------CcccccccccccCCccccccceeEEeecccCceEEeccCCc
Confidence 57888997 789999999865 3556655555555544 44432 23478877 677
Q ss_pred EEEEEEeeC
Q psy92 347 KIYIWQLKD 355 (638)
Q Consensus 347 ~l~v~~l~~ 355 (638)
+|.+|+-++
T Consensus 432 tIk~~keDe 440 (460)
T KOG0285|consen 432 TIKMYKEDE 440 (460)
T ss_pred ceEEEeccc
Confidence 899997653
No 75
>KOG2106|consensus
Probab=81.73 E-value=39 Score=37.91 Aligned_cols=99 Identities=19% Similarity=0.256 Sum_probs=70.1
Q ss_pred eEEEEEEeeCCceEEEc-cccCeeEEEecC---EEEEEEeeCCceeeeEEeecceeEEEEeeecCEEEEeeccCcEEEEE
Q psy92 318 IKMIYAKEQKGPVTAIC-HVAGFLVTAVGQ---KIYIWQLKDNDLTGIAFIDTEVYIASMVSVKNLILVGDYARSIALLR 393 (638)
Q Consensus 318 Lkl~~~~~~~G~V~al~-~~~g~Ll~avg~---~l~v~~l~~~~L~~~a~~d~~~~i~~i~~~~~~IlvgD~~~Sv~ll~ 393 (638)
=|++..+.+..|+.|+. +..| ++|+|. ...+.+.+..+|+.+-.-..+..++.-.-.|++++||.--.++.+++
T Consensus 398 ~k~~wt~~~~d~~~~~~fhpsg--~va~Gt~~G~w~V~d~e~~~lv~~~~d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~ 475 (626)
T KOG2106|consen 398 HKLEWTKIIEDPAECADFHPSG--VVAVGTATGRWFVLDTETQDLVTIHTDNEQLSVVRYSPDGAFLAVGSHDNHIYIYR 475 (626)
T ss_pred CceeEEEEecCceeEeeccCcc--eEEEeeccceEEEEecccceeEEEEecCCceEEEEEcCCCCEEEEecCCCeEEEEE
Confidence 35677777888888875 3345 455554 45666666666665443334444555556799999999999999999
Q ss_pred EeccCCeEEEEeccCCCcceeeeecc
Q psy92 394 YQPEYRTLSLVARDYKPTQPNSKGYY 419 (638)
Q Consensus 394 ~~~~~~~l~~~arD~~~~~v~~~~~l 419 (638)
.+...+++..+.+-.. -.++++++-
T Consensus 476 Vs~~g~~y~r~~k~~g-s~ithLDwS 500 (626)
T KOG2106|consen 476 VSANGRKYSRVGKCSG-SPITHLDWS 500 (626)
T ss_pred ECCCCcEEEEeeeecC-ceeEEeeec
Confidence 9998889988887666 667777664
No 76
>KOG1898|consensus
Probab=81.29 E-value=98 Score=37.90 Aligned_cols=92 Identities=17% Similarity=0.236 Sum_probs=63.7
Q ss_pred eEEEEEEEEeecCCCCccccCceEEEEEEeeCCceEEEccccCeeEEE-ecCEEEEEEee--CCceeeeEEeecceeEEE
Q psy92 296 RILLFDIIEVVPEPGQPLTKNKIKMIYAKEQKGPVTAICHVAGFLVTA-VGQKIYIWQLK--DNDLTGIAFIDTEVYIAS 372 (638)
Q Consensus 296 rI~vf~i~~vvpe~g~~~t~~kLkl~~~~~~~G~V~al~~~~g~Ll~a-vg~~l~v~~l~--~~~L~~~a~~d~~~~i~~ 372 (638)
++++|++-+ .+++.+.++|. +.--|+.++....+++++ +--.+.++.++ +++|...|-=-.+=+++.
T Consensus 955 ~l~~YdlG~-----K~lLRk~e~k~-----~p~~Is~iqt~~~RI~VgD~qeSV~~~~y~~~~n~l~~fadD~~pR~Vt~ 1024 (1205)
T KOG1898|consen 955 FLRLYDLGK-----KKLLRKCELKF-----IPNRISSIQTYGARIVVGDIQESVHFVRYRREDNQLIVFADDPVPRHVTA 1024 (1205)
T ss_pred EEEEeeCCh-----HHHHhhhhhcc-----CceEEEEEeecceEEEEeeccceEEEEEEecCCCeEEEEeCCCccceeeE
Confidence 788898854 22222223333 567889999999999999 44466665554 788887663334556777
Q ss_pred Eeee-cCEEEEeeccCcEEEEEEecc
Q psy92 373 MVSV-KNLILVGDYARSIALLRYQPE 397 (638)
Q Consensus 373 i~~~-~~~IlvgD~~~Sv~ll~~~~~ 397 (638)
+..+ .+-+++||-+--++++|.-++
T Consensus 1025 ~~~lD~~tvagaDrfGNi~~vR~P~d 1050 (1205)
T KOG1898|consen 1025 LELLDYDTVAGADRFGNIAVVRIPPD 1050 (1205)
T ss_pred EEEecCCceeeccccCcEEEEECCCc
Confidence 6655 588999999999999997543
No 77
>KOG0277|consensus
Probab=81.05 E-value=4.3 Score=41.54 Aligned_cols=67 Identities=13% Similarity=0.359 Sum_probs=53.7
Q ss_pred ccEEEEeecccCCCCcccceeEEEEEEEEeecCCCCccccCceEEEEEEeeCCceEEEcc---ccCeeEEEecC-EEEEE
Q psy92 276 RGYIALGTNYNYSEDVTCRGRILLFDIIEVVPEPGQPLTKNKIKMIYAKEQKGPVTAICH---VAGFLVTAVGQ-KIYIW 351 (638)
Q Consensus 276 ~~~ivVGT~~~~~ed~~~~GrI~vf~i~~vvpe~g~~~t~~kLkl~~~~~~~G~V~al~~---~~g~Ll~avg~-~l~v~ 351 (638)
..+|+|.|+.++| ..-.|||+++++.+ ...+..+...+....++.++- ..+-+++|+|. .|++|
T Consensus 21 ~nrLavAt~q~yG--l~G~G~L~ile~~~----------~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~ 88 (311)
T KOG0277|consen 21 ENRLAVATAQHYG--LAGNGRLFILEVTD----------PKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLF 88 (311)
T ss_pred cchhheeehhhcc--cccCceEEEEecCC----------CCCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEe
Confidence 5788999988876 45689999999863 246888999999999999873 33568888886 89999
Q ss_pred Eee
Q psy92 352 QLK 354 (638)
Q Consensus 352 ~l~ 354 (638)
++.
T Consensus 89 d~~ 91 (311)
T KOG0277|consen 89 DLT 91 (311)
T ss_pred ccC
Confidence 976
No 78
>KOG4378|consensus
Probab=81.00 E-value=74 Score=35.71 Aligned_cols=54 Identities=9% Similarity=0.065 Sum_probs=36.1
Q ss_pred CCCcEEE-EEcCCeEEEEEeCCCCCCCCCceeEEEeCCCcccEEEEecCCCEEEEEEee
Q psy92 141 CPRGFLY-FNAKSELRISVLPTHLSYDAPWPVRKVPLKCTPHFLAYHLETKTYCIVTST 198 (638)
Q Consensus 141 ~~~gfl~-~~~~~~L~I~~l~~~~~~~~~~~~r~ipL~~tp~ri~y~~~~~~~~V~~s~ 198 (638)
|.+.+|+ +..+|.|.|-.+-+.+ +...-+++-+...|.+-||+..+.+.+..+.
T Consensus 131 ~~DeyiAsvs~gGdiiih~~~t~~----~tt~f~~~sgqsvRll~ys~skr~lL~~asd 185 (673)
T KOG4378|consen 131 NTDEYIASVSDGGDIIIHGTKTKQ----KTTTFTIDSGQSVRLLRYSPSKRFLLSIASD 185 (673)
T ss_pred CCcceeEEeccCCcEEEEecccCc----cccceecCCCCeEEEeecccccceeeEeecc
Confidence 4444443 3346778777776644 3555667778888999999987777665543
No 79
>KOG0288|consensus
Probab=80.73 E-value=23 Score=38.60 Aligned_cols=90 Identities=14% Similarity=0.284 Sum_probs=52.1
Q ss_pred EEEEeCCCceeecceeecCCCceeEeEEEEEEeeccCccCCcccEEEEeecccCCCCcccceeEEEEEEEEeecCCCCcc
Q psy92 234 VSLFSPFSWEEIPQTNFPLHEWEHVLCLKNVSMEYEGTLSGLRGYIALGTNYNYSEDVTCRGRILLFDIIEVVPEPGQPL 313 (638)
Q Consensus 234 i~lid~~t~~~i~~~~~~l~~~E~v~si~~v~l~~~~~~~~~~~~ivVGT~~~~~ed~~~~GrI~vf~i~~vvpe~g~~~ 313 (638)
+.++|-.+.++.. .|.-+-+--.....-+.|.. ...|++-|. +.|++++|++..
T Consensus 365 l~viDlRt~eI~~--~~sA~g~k~asDwtrvvfSp------d~~YvaAGS---------~dgsv~iW~v~t--------- 418 (459)
T KOG0288|consen 365 LKVIDLRTKEIRQ--TFSAEGFKCASDWTRVVFSP------DGSYVAAGS---------ADGSVYIWSVFT--------- 418 (459)
T ss_pred eeeeecccccEEE--EeeccccccccccceeEECC------CCceeeecc---------CCCcEEEEEccC---------
Confidence 5566666666553 33222111111122344533 369999998 899999999864
Q ss_pred ccCceEEEEEEeeCC-ceEEEc--cccCeeEEEecC-EEEEE
Q psy92 314 TKNKIKMIYAKEQKG-PVTAIC--HVAGFLVTAVGQ-KIYIW 351 (638)
Q Consensus 314 t~~kLkl~~~~~~~G-~V~al~--~~~g~Ll~avg~-~l~v~ 351 (638)
.|++.+.+..... +|+++. +-+.+|++|-.+ .+.+|
T Consensus 419 --gKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW 458 (459)
T KOG0288|consen 419 --GKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLW 458 (459)
T ss_pred --ceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEec
Confidence 4777666655543 788875 334456666443 45555
No 80
>KOG1274|consensus
Probab=80.71 E-value=1.2e+02 Score=36.61 Aligned_cols=135 Identities=15% Similarity=0.140 Sum_probs=87.7
Q ss_pred cceeEEEEEEEEeecCCCCccccCceEEEEEEeeCCceEEEccccCeeEEE-ecCEEEEEEeeCCcee-eeEEeecceeE
Q psy92 293 CRGRILLFDIIEVVPEPGQPLTKNKIKMIYAKEQKGPVTAICHVAGFLVTA-VGQKIYIWQLKDNDLT-GIAFIDTEVYI 370 (638)
Q Consensus 293 ~~GrI~vf~i~~vvpe~g~~~t~~kLkl~~~~~~~G~V~al~~~~g~Ll~a-vg~~l~v~~l~~~~L~-~~a~~d~~~~i 370 (638)
+.|-|.+|+.... + +.|.+- .. ....|+++....++|++| ..++|.+|.+...+-. -.+-+-+|.-.
T Consensus 33 sdg~ir~~~~~sd--~-e~P~ti---~~-----~g~~v~~ia~~s~~f~~~s~~~tv~~y~fps~~~~~iL~Rftlp~r~ 101 (933)
T KOG1274|consen 33 SDGDIRKWKTNSD--E-EEPETI---DI-----SGELVSSIACYSNHFLTGSEQNTVLRYKFPSGEEDTILARFTLPIRD 101 (933)
T ss_pred CCCceEEeecCCc--c-cCCchh---hc-----cCceeEEEeecccceEEeeccceEEEeeCCCCCccceeeeeeccceE
Confidence 6788999986542 1 334221 11 456788998888888887 5668889998844311 12223344444
Q ss_pred EEEeeecCEEEEeeccCcEEEEEEeccCCeEEEEeccCCCcceeeeecccCCCCCcccccccceeeeeeccccccccccc
Q psy92 371 ASMVSVKNLILVGDYARSIALLRYQPEYRTLSLVARDYKPTQPNSKGYYAGNPSRGIIDGSLVWKFLQLSLGERLEICKK 450 (638)
Q Consensus 371 ~~i~~~~~~IlvgD~~~Sv~ll~~~~~~~~l~~~arD~~~~~v~~~~~l~~~~~~~~vd~~~~~~~~~~~~gd~~~~~~r 450 (638)
+.+...|++|++|---..|-++.-+.....+.+.+-|. .|+++.|- ..
T Consensus 102 ~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~a---pVl~l~~~--------p~--------------------- 149 (933)
T KOG1274|consen 102 LAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDA---PVLQLSYD--------PK--------------------- 149 (933)
T ss_pred EEEecCCcEEEeecCceeEEEEeccccchheeecccCC---ceeeeeEc--------CC---------------------
Confidence 44445567999998888899998877666666655543 36676662 11
Q ss_pred cCCcccccccCCCceeEEEEeCCCcEEEEEeCC
Q psy92 451 IGSKHNDILDEFSSMGFMISDKDKNVVLFMYQP 483 (638)
Q Consensus 451 ~~~~~~~~~~~~~~l~~l~aD~~~nl~v~~~~~ 483 (638)
++ .+.+++-+|++.+++.+.
T Consensus 150 -----------~~--fLAvss~dG~v~iw~~~~ 169 (933)
T KOG1274|consen 150 -----------GN--FLAVSSCDGKVQIWDLQD 169 (933)
T ss_pred -----------CC--EEEEEecCceEEEEEccc
Confidence 22 356677899999999875
No 81
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=80.17 E-value=1.1e+02 Score=34.42 Aligned_cols=223 Identities=14% Similarity=0.194 Sum_probs=106.2
Q ss_pred eeeEEEeeecCCceeEEecCCCCeEEEEecCCceEEEecCCCCCccEEecccCCCCCCcEEEEEcCCeEEEEE-eCCCCC
Q psy92 86 ISQMRYFSNIAGYQGVFLCGPHPAWLFLTSRGELRAHPMTIDGPVSTLAPFHNVNCPRGFLYFNAKSELRISV-LPTHLS 164 (638)
Q Consensus 86 ~~~l~~f~~~~g~~~Vf~~g~~P~~i~~~~~~~l~~~pl~~~~~v~~~a~F~~~~~~~gfl~~~~~~~L~I~~-l~~~~~ 164 (638)
|..|..=+ +| ..|.+||+..+.|+.+. .++-... +.-.. +.|.+ .+.|....+.+.+.|.+ +.
T Consensus 35 p~~ls~np--ng-r~v~V~g~geY~iyt~~--~~r~k~~---G~g~~-~vw~~---~n~yAv~~~~~~I~I~kn~~---- 98 (443)
T PF04053_consen 35 PQSLSHNP--NG-RFVLVCGDGEYEIYTAL--AWRNKAF---GSGLS-FVWSS---RNRYAVLESSSTIKIYKNFK---- 98 (443)
T ss_dssp -SEEEE-T--TS-SEEEEEETTEEEEEETT--TTEEEEE---EE-SE-EEE-T---SSEEEEE-TTS-EEEEETTE----
T ss_pred CeeEEECC--CC-CEEEEEcCCEEEEEEcc--CCccccc---CceeE-EEEec---CccEEEEECCCeEEEEEcCc----
Confidence 55555544 34 56888999997776532 1111111 11111 12332 34577766677787742 22
Q ss_pred CCCCceeEEEeCCCcccEEEEecCCCEEEEEEeeecCCCcccccCCccccccCCCCCCCCCCCcccccEEEEEeCCCcee
Q psy92 165 YDAPWPVRKVPLKCTPHFLAYHLETKTYCIVTSTAEPSTDYYKFNGEDKELVTDPRDSRFIPPLVSQFHVSLFSPFSWEE 244 (638)
Q Consensus 165 ~~~~~~~r~ipL~~tp~ri~y~~~~~~~~V~~s~~~~~~~~~~~~~e~~e~~~~~~~~~~~~p~~~~~~i~lid~~t~~~ 244 (638)
.-.++++++..++.+|-+ ...+++.. ...|.++|-.+.+.
T Consensus 99 ---~~~~k~i~~~~~~~~If~---G~LL~~~~----------------------------------~~~i~~yDw~~~~~ 138 (443)
T PF04053_consen 99 ---NEVVKSIKLPFSVEKIFG---GNLLGVKS----------------------------------SDFICFYDWETGKL 138 (443)
T ss_dssp ---E-TT-----SS-EEEEE----SSSEEEEE----------------------------------TTEEEEE-TTT--E
T ss_pred ---cccceEEcCCcccceEEc---CcEEEEEC----------------------------------CCCEEEEEhhHcce
Confidence 134567888888888887 33333221 12488888777777
Q ss_pred ecceeecCCCceeEeEEEEEEeeccCccCCcccEEEEeecccCCCCcccceeEEEEEEEEe----ecCCCCccccCceEE
Q psy92 245 IPQTNFPLHEWEHVLCLKNVSMEYEGTLSGLRGYIALGTNYNYSEDVTCRGRILLFDIIEV----VPEPGQPLTKNKIKM 320 (638)
Q Consensus 245 i~~~~~~l~~~E~v~si~~v~l~~~~~~~~~~~~ivVGT~~~~~ed~~~~GrI~vf~i~~v----vpe~g~~~t~~kLkl 320 (638)
+. +++.. .++.|.... ..+++++-| +-.+++++.... .++.|- ...+.+
T Consensus 139 i~--~i~v~------~vk~V~Ws~------~g~~val~t----------~~~i~il~~~~~~~~~~~~~g~---e~~f~~ 191 (443)
T PF04053_consen 139 IR--RIDVS------AVKYVIWSD------DGELVALVT----------KDSIYILKYNLEAVAAIPEEGV---EDAFEL 191 (443)
T ss_dssp EE--EESS-------E-EEEEE-T------TSSEEEEE-----------S-SEEEEEE-HHHHHHBTTTB----GGGEEE
T ss_pred ee--EEecC------CCcEEEEEC------CCCEEEEEe----------CCeEEEEEecchhcccccccCc---hhceEE
Confidence 76 55544 234444432 257888776 335677766543 233222 246777
Q ss_pred EEEEeeCCceEEEccccCeeEEEecCEEEEEEeeCCceeeeEEeecceeEEEEeeecCEEEEeeccCcEEEEEEe
Q psy92 321 IYAKEQKGPVTAICHVAGFLVTAVGQKIYIWQLKDNDLTGIAFIDTEVYIASMVSVKNLILVGDYARSIALLRYQ 395 (638)
Q Consensus 321 ~~~~~~~G~V~al~~~~g~Ll~avg~~l~v~~l~~~~L~~~a~~d~~~~i~~i~~~~~~IlvgD~~~Sv~ll~~~ 395 (638)
++ |+...|.+.+-.++-++....+.|.. +-.++--.++.+|-+.|+....-..|++++-|-..++.-+..+
T Consensus 192 ~~--E~~~~IkSg~W~~d~fiYtT~~~lkY--l~~Ge~~~i~~ld~~~yllgy~~~~~~ly~~Dr~~~v~~~~ld 262 (443)
T PF04053_consen 192 IH--EISERIKSGCWVEDCFIYTTSNHLKY--LVNGETGIIAHLDKPLYLLGYLPKENRLYLIDRDGNVISYELD 262 (443)
T ss_dssp EE--EE-S--SEEEEETTEEEEE-TTEEEE--EETTEEEEEEE-SS--EEEEEETTTTEEEEE-TT--EEEEE--
T ss_pred EE--EecceeEEEEEEcCEEEEEcCCeEEE--EEcCCcceEEEcCCceEEEEEEccCCEEEEEECCCCEEEEEEC
Confidence 77 45667777777777667776665544 5556666666677777776665555677776655555554443
No 82
>KOG1036|consensus
Probab=79.45 E-value=88 Score=33.03 Aligned_cols=142 Identities=15% Similarity=0.291 Sum_probs=84.2
Q ss_pred EcCCeEEEEEeCCCCCCCCCceeEEEeCCCcccEEEEecCCCEEEEEEeeecCCCcccccCCccccccCCCCCCCCCCCc
Q psy92 149 NAKSELRISVLPTHLSYDAPWPVRKVPLKCTPHFLAYHLETKTYCIVTSTAEPSTDYYKFNGEDKELVTDPRDSRFIPPL 228 (638)
Q Consensus 149 ~~~~~L~I~~l~~~~~~~~~~~~r~ipL~~tp~ri~y~~~~~~~~V~~s~~~~~~~~~~~~~e~~e~~~~~~~~~~~~p~ 228 (638)
+++..+.|..|.. ++..+..|.=+|++..|.|+..|+..-|++.+.+-+..-.+ +++. +|. +
T Consensus 152 ~~~r~v~iyDLRn---~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~--~d~s-~~~------------~ 213 (323)
T KOG1036|consen 152 TSDRKVLIYDLRN---LDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEY--FDDS-EEA------------Q 213 (323)
T ss_pred ecCceEEEEEccc---ccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEc--cCCc-hHH------------h
Confidence 4555666666655 46678888899999999999999888898776543321100 1110 000 0
Q ss_pred ccccEEEEEeCCCceeecceeecCCCceeEeEEEEEEeeccCccCCcccEEEEeecccCCCCcccceeEEEEEEEEeecC
Q psy92 229 VSQFHVSLFSPFSWEEIPQTNFPLHEWEHVLCLKNVSMEYEGTLSGLRGYIALGTNYNYSEDVTCRGRILLFDIIEVVPE 308 (638)
Q Consensus 229 ~~~~~i~lid~~t~~~i~~~~~~l~~~E~v~si~~v~l~~~~~~~~~~~~ivVGT~~~~~ed~~~~GrI~vf~i~~vvpe 308 (638)
..++. |+. |......-|.+.++-.+.|.. ....++-|- +.|-+.+|+...
T Consensus 214 skkya--------FkC---Hr~~~~~~~~~yPVNai~Fhp------~~~tfaTgG---------sDG~V~~Wd~~~---- 263 (323)
T KOG1036|consen 214 SKKYA--------FKC---HRLSEKDTEIIYPVNAIAFHP------IHGTFATGG---------SDGIVNIWDLFN---- 263 (323)
T ss_pred hhcee--------EEe---eecccCCceEEEEeceeEecc------ccceEEecC---------CCceEEEccCcc----
Confidence 11122 222 122335557777777777743 345566554 789999998753
Q ss_pred CCCccccCceEEEEEEeeCCceEEEccccCeeEEEe
Q psy92 309 PGQPLTKNKIKMIYAKEQKGPVTAICHVAGFLVTAV 344 (638)
Q Consensus 309 ~g~~~t~~kLkl~~~~~~~G~V~al~~~~g~Ll~av 344 (638)
+++|+.+++.+..=+..+.+.-...|.+|.
T Consensus 264 ------rKrl~q~~~~~~SI~slsfs~dG~~LAia~ 293 (323)
T KOG1036|consen 264 ------RKRLKQLAKYETSISSLSFSMDGSLLAIAS 293 (323)
T ss_pred ------hhhhhhccCCCCceEEEEeccCCCeEEEEe
Confidence 678999997744334444444444554443
No 83
>PHA02713 hypothetical protein; Provisional
Probab=79.01 E-value=47 Score=38.32 Aligned_cols=72 Identities=13% Similarity=0.135 Sum_probs=44.1
Q ss_pred EEEEEEeeCCceeeeEEeecceeEEEEeeecCEEEE-eecc---------------------CcEEEEEEeccCCeEEEE
Q psy92 347 KIYIWQLKDNDLTGIAFIDTEVYIASMVSVKNLILV-GDYA---------------------RSIALLRYQPEYRTLSLV 404 (638)
Q Consensus 347 ~l~v~~l~~~~L~~~a~~d~~~~i~~i~~~~~~Ilv-gD~~---------------------~Sv~ll~~~~~~~~l~~~ 404 (638)
.+..|+...+++..++-+..+-.-.++.+.++.|+| |-.. ..=.+..|+++.++-..+
T Consensus 368 sve~Ydp~~~~W~~~~~mp~~r~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v 447 (557)
T PHA02713 368 TIECYTMGDDKWKMLPDMPIALSSYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETL 447 (557)
T ss_pred eEEEEECCCCeEEECCCCCcccccccEEEECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeec
Confidence 578899888877766654443333445567777765 4321 123477899988888877
Q ss_pred eccCCCcceeeeec
Q psy92 405 ARDYKPTQPNSKGY 418 (638)
Q Consensus 405 arD~~~~~v~~~~~ 418 (638)
+.=..+|.-.++..
T Consensus 448 ~~m~~~r~~~~~~~ 461 (557)
T PHA02713 448 PNFWTGTIRPGVVS 461 (557)
T ss_pred CCCCcccccCcEEE
Confidence 76555554433333
No 84
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=78.47 E-value=77 Score=31.80 Aligned_cols=83 Identities=17% Similarity=0.140 Sum_probs=57.5
Q ss_pred eeCCceEEEcc-ccCeeEEEecCEEEEEEeeCCceeeeEEee----cceeEEEEeee-cCEEEEeeccCcE-------EE
Q psy92 325 EQKGPVTAICH-VAGFLVTAVGQKIYIWQLKDNDLTGIAFID----TEVYIASMVSV-KNLILVGDYARSI-------AL 391 (638)
Q Consensus 325 ~~~G~V~al~~-~~g~Ll~avg~~l~v~~l~~~~L~~~a~~d----~~~~i~~i~~~-~~~IlvgD~~~Sv-------~l 391 (638)
...+|+.+... -+|.|++|....+.++++..+++...+... .......+.+. .+.++++|..... .+
T Consensus 38 ~~~~~~G~~~~~~~g~l~v~~~~~~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v 117 (246)
T PF08450_consen 38 DLPGPNGMAFDRPDGRLYVADSGGIAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSV 117 (246)
T ss_dssp ESSSEEEEEEECTTSEEEEEETTCEEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEE
T ss_pred ecCCCceEEEEccCCEEEEEEcCceEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccce
Confidence 44556666666 579999999999999988877776666552 34566677665 3569999987653 57
Q ss_pred EEEeccCCeEEEEeccC
Q psy92 392 LRYQPEYRTLSLVARDY 408 (638)
Q Consensus 392 l~~~~~~~~l~~~arD~ 408 (638)
++++.+ .+...+..+.
T Consensus 118 ~~~~~~-~~~~~~~~~~ 133 (246)
T PF08450_consen 118 YRIDPD-GKVTVVADGL 133 (246)
T ss_dssp EEEETT-SEEEEEEEEE
T ss_pred EEECCC-CeEEEEecCc
Confidence 788777 6666665553
No 85
>KOG2055|consensus
Probab=78.18 E-value=93 Score=34.63 Aligned_cols=88 Identities=18% Similarity=0.251 Sum_probs=56.2
Q ss_pred cceeEEEEEEEEeecCCCCccccCceEEEEEEeeCCceEEEcccc-CeeEEEecC--EEEEEEeeCCceeeeEEeeccee
Q psy92 293 CRGRILLFDIIEVVPEPGQPLTKNKIKMIYAKEQKGPVTAICHVA-GFLVTAVGQ--KIYIWQLKDNDLTGIAFIDTEVY 369 (638)
Q Consensus 293 ~~GrI~vf~i~~vvpe~g~~~t~~kLkl~~~~~~~G~V~al~~~~-g~Ll~avg~--~l~v~~l~~~~L~~~a~~d~~~~ 369 (638)
-.|.|+++... .-++++...+.|.|.+++-.. |+.|.++|. .|++|+++.+..+..-.=+..++
T Consensus 323 ~~G~I~lLhak-------------T~eli~s~KieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~ 389 (514)
T KOG2055|consen 323 NNGHIHLLHAK-------------TKELITSFKIEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVH 389 (514)
T ss_pred cCceEEeehhh-------------hhhhhheeeeccEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEeecCccc
Confidence 57889888754 235788889999999998543 444444432 78889988765433222355667
Q ss_pred EEEEe--eecCEEEEeeccCcEEEEE
Q psy92 370 IASMV--SVKNLILVGDYARSIALLR 393 (638)
Q Consensus 370 i~~i~--~~~~~IlvgD~~~Sv~ll~ 393 (638)
.+++. -.+.++.+|--.-=|-++.
T Consensus 390 gts~~~S~ng~ylA~GS~~GiVNIYd 415 (514)
T KOG2055|consen 390 GTSLCISLNGSYLATGSDSGIVNIYD 415 (514)
T ss_pred eeeeeecCCCceEEeccCcceEEEec
Confidence 77766 3467777775444444443
No 86
>KOG2445|consensus
Probab=77.13 E-value=64 Score=34.16 Aligned_cols=69 Identities=17% Similarity=0.388 Sum_probs=48.4
Q ss_pred cccEEEEeecccCCCCcccceeEEEEEEEEe--------ecCCCCccccCceEEEEEE-eeCCceEEEc-cccCeeEEEe
Q psy92 275 LRGYIALGTNYNYSEDVTCRGRILLFDIIEV--------VPEPGQPLTKNKIKMIYAK-EQKGPVTAIC-HVAGFLVTAV 344 (638)
Q Consensus 275 ~~~~ivVGT~~~~~ed~~~~GrI~vf~i~~v--------vpe~g~~~t~~kLkl~~~~-~~~G~V~al~-~~~g~Ll~av 344 (638)
....|+|+| ..| |+||.+... +-.|+. .++.+++++.+. +.+|.|-.++ .+-|.+|+..
T Consensus 238 ~y~~lAvA~---------kDg-v~I~~v~~~~s~i~~ee~~~~~~-~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsSt 306 (361)
T KOG2445|consen 238 SYHLLAVAT---------KDG-VRIFKVKVARSAIEEEEVLAPDL-MTDLPVEKVSELDDHNGEVWRVRWNMTGTILSST 306 (361)
T ss_pred ceeeEEEee---------cCc-EEEEEEeeccchhhhhcccCCCC-ccccceEEeeeccCCCCceEEEEEeeeeeEEeec
Confidence 456777777 678 999999742 122222 245667777754 4689999987 5779999998
Q ss_pred cC--EEEEEEee
Q psy92 345 GQ--KIYIWQLK 354 (638)
Q Consensus 345 g~--~l~v~~l~ 354 (638)
|. +|++|+-.
T Consensus 307 GdDG~VRLWkan 318 (361)
T KOG2445|consen 307 GDDGCVRLWKAN 318 (361)
T ss_pred CCCceeeehhhh
Confidence 87 78888655
No 87
>KOG2321|consensus
Probab=76.76 E-value=86 Score=35.87 Aligned_cols=174 Identities=15% Similarity=0.177 Sum_probs=84.5
Q ss_pred eeEEecCCCCeEEEEe--cCCceEEEecCCCCCccEEecccCCCCCCcEEEEEcCCeEEEEEeCCCCCCCCCceeEEEeC
Q psy92 99 QGVFLCGPHPAWLFLT--SRGELRAHPMTIDGPVSTLAPFHNVNCPRGFLYFNAKSELRISVLPTHLSYDAPWPVRKVPL 176 (638)
Q Consensus 99 ~~Vf~~g~~P~~i~~~--~~~~l~~~pl~~~~~v~~~a~F~~~~~~~gfl~~~~~~~L~I~~l~~~~~~~~~~~~r~ipL 176 (638)
.-++++|..+.||-+- ++=.|.+-.. .+..+..|-+..-.-..-.||. .+-.+- +.. ++ +.|.+ +.+
T Consensus 64 qY~lAtG~YKP~ikvydlanLSLKFERh-lDae~V~feiLsDD~SK~v~L~--~DR~Ie---fHa--k~--G~hy~-~RI 132 (703)
T KOG2321|consen 64 QYLLATGTYKPQIKVYDLANLSLKFERH-LDAEVVDFEILSDDYSKSVFLQ--NDRTIE---FHA--KY--GRHYR-TRI 132 (703)
T ss_pred cEEEEecccCCceEEEEcccceeeeeec-ccccceeEEEeccchhhheEee--cCceee---ehh--hc--Ceeee-eec
Confidence 4488899887777442 1222333332 2344555555543222222221 222221 111 12 23332 345
Q ss_pred CCcccEEEEecCCCEEEEEEeeecCCCcccccCCccc-----------cccCCC--CCCCCCCCcccccEEEEEeCCCce
Q psy92 177 KCTPHFLAYHLETKTYCIVTSTAEPSTDYYKFNGEDK-----------ELVTDP--RDSRFIPPLVSQFHVSLFSPFSWE 243 (638)
Q Consensus 177 ~~tp~ri~y~~~~~~~~V~~s~~~~~~~~~~~~~e~~-----------e~~~~~--~~~~~~~p~~~~~~i~lid~~t~~ 243 (638)
..-.|-++||..+--+.++.+..+.| ++|-|-+ +.+... ..-....--.+.+.+++.||.+-+
T Consensus 133 P~~GRDm~y~~~scDly~~gsg~evY----RlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ks 208 (703)
T KOG2321|consen 133 PKFGRDMKYHKPSCDLYLVGSGSEVY----RLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKS 208 (703)
T ss_pred CcCCccccccCCCccEEEeecCcceE----EEEccccccccccccccccceeeeecCccceEEecccCceEEEecchhhh
Confidence 55568899997665555555544555 2221111 111000 000000111234678999987655
Q ss_pred eecceeecCCCc-------eeEeEEEEEEeeccCccCCcccEEEEeecccCCCCcccceeEEEEEEEE
Q psy92 244 EIPQTNFPLHEW-------EHVLCLKNVSMEYEGTLSGLRGYIALGTNYNYSEDVTCRGRILLFDIIE 304 (638)
Q Consensus 244 ~i~~~~~~l~~~-------E~v~si~~v~l~~~~~~~~~~~~ivVGT~~~~~ed~~~~GrI~vf~i~~ 304 (638)
.+. .++...+ -..-++..+.|.++ --.++||| +.|.+|+|++..
T Consensus 209 rv~--~l~~~~~v~s~pg~~~~~svTal~F~d~------gL~~aVGt---------s~G~v~iyDLRa 259 (703)
T KOG2321|consen 209 RVG--TLDAASSVNSHPGGDAAPSVTALKFRDD------GLHVAVGT---------STGSVLIYDLRA 259 (703)
T ss_pred hhe--eeecccccCCCccccccCcceEEEecCC------ceeEEeec---------cCCcEEEEEccc
Confidence 443 2332221 11224566677642 36799999 899999999975
No 88
>KOG0289|consensus
Probab=76.05 E-value=1.3e+02 Score=33.25 Aligned_cols=91 Identities=16% Similarity=0.278 Sum_probs=56.4
Q ss_pred cceeEEEEEEEEeecCCCCccccCceEEEEEEe-eCCceEEEc-cccCe-eEEEecCE-EEEEEeeCCceeeeEEeecce
Q psy92 293 CRGRILLFDIIEVVPEPGQPLTKNKIKMIYAKE-QKGPVTAIC-HVAGF-LVTAVGQK-IYIWQLKDNDLTGIAFIDTEV 368 (638)
Q Consensus 293 ~~GrI~vf~i~~vvpe~g~~~t~~kLkl~~~~~-~~G~V~al~-~~~g~-Ll~avg~~-l~v~~l~~~~L~~~a~~d~~~ 368 (638)
..|-+.+|++.+. . -+.+.. ..|||.+|. +-||| |+++.... |++|+|++-+..+.--++...
T Consensus 367 ~d~~vkiwdlks~----~---------~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~ 433 (506)
T KOG0289|consen 367 PDGVVKIWDLKSQ----T---------NVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKK 433 (506)
T ss_pred CCceEEEEEcCCc----c---------ccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccc
Confidence 7889999998752 1 112222 368999997 45775 66667766 999999854422221122222
Q ss_pred eEEEE--eeecCEEEEeeccCcEEEEEEeccC
Q psy92 369 YIASM--VSVKNLILVGDYARSIALLRYQPEY 398 (638)
Q Consensus 369 ~i~~i--~~~~~~IlvgD~~~Sv~ll~~~~~~ 398 (638)
-+.++ .--|.++.++ -.++.++.|+...
T Consensus 434 ~v~s~~fD~SGt~L~~~--g~~l~Vy~~~k~~ 463 (506)
T KOG0289|consen 434 EVNSLSFDQSGTYLGIA--GSDLQVYICKKKT 463 (506)
T ss_pred cceeEEEcCCCCeEEee--cceeEEEEEeccc
Confidence 23333 3446777777 7788888887543
No 89
>PHA03098 kelch-like protein; Provisional
Probab=76.04 E-value=47 Score=37.77 Aligned_cols=83 Identities=14% Similarity=0.156 Sum_probs=47.9
Q ss_pred EccccCeeEEEec--------CEEEEEEeeCCceeeeEEeecceeEEEEeeecCEEEE-eeccC------cEEEEEEecc
Q psy92 333 ICHVAGFLVTAVG--------QKIYIWQLKDNDLTGIAFIDTEVYIASMVSVKNLILV-GDYAR------SIALLRYQPE 397 (638)
Q Consensus 333 l~~~~g~Ll~avg--------~~l~v~~l~~~~L~~~a~~d~~~~i~~i~~~~~~Ilv-gD~~~------Sv~ll~~~~~ 397 (638)
.+.++|+|.+.-| +.+..|+...+++..++.+..+-...++.+.++.|++ |=... .-.+..|+++
T Consensus 385 ~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~ 464 (534)
T PHA03098 385 VVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCAIYHDGKIYVIGGISYIDNIKVYNIVESYNPV 464 (534)
T ss_pred EEEECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCceEEEECCEEEEECCccCCCCCcccceEEEecCC
Confidence 3456777766655 3577888887777665533333334455566776654 32110 1126788888
Q ss_pred CCeEEEEeccCCCcceee
Q psy92 398 YRTLSLVARDYKPTQPNS 415 (638)
Q Consensus 398 ~~~l~~~arD~~~~~v~~ 415 (638)
.++-..++.-..+++-.+
T Consensus 465 ~~~W~~~~~~~~~r~~~~ 482 (534)
T PHA03098 465 TNKWTELSSLNFPRINAS 482 (534)
T ss_pred CCceeeCCCCCcccccce
Confidence 777777665444554433
No 90
>PHA02713 hypothetical protein; Provisional
Probab=74.83 E-value=42 Score=38.72 Aligned_cols=73 Identities=16% Similarity=0.108 Sum_probs=47.1
Q ss_pred EEEEEEeeCCceeeeEEeecceeEEEEeeecCEEE-Eeecc---CcE-EEEEEeccC-CeEEEEeccCCCcceeeeecc
Q psy92 347 KIYIWQLKDNDLTGIAFIDTEVYIASMVSVKNLIL-VGDYA---RSI-ALLRYQPEY-RTLSLVARDYKPTQPNSKGYY 419 (638)
Q Consensus 347 ~l~v~~l~~~~L~~~a~~d~~~~i~~i~~~~~~Il-vgD~~---~Sv-~ll~~~~~~-~~l~~~arD~~~~~v~~~~~l 419 (638)
++..|+...+++..++-+..+-.-.++.+.++.|+ +|... ... .+.+|+++. ++-..++.=..+|....+..+
T Consensus 433 ~ve~YDP~td~W~~v~~m~~~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~~ 511 (557)
T PHA02713 433 KVIRYDTVNNIWETLPNFWTGTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTILH 511 (557)
T ss_pred eEEEECCCCCeEeecCCCCcccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEEE
Confidence 47778888888777665444433445667788775 45332 112 367899987 788888876667766555554
No 91
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=74.82 E-value=1e+02 Score=31.36 Aligned_cols=49 Identities=16% Similarity=0.197 Sum_probs=37.1
Q ss_pred cEEEEEcCCeEEEEEeCCCCCCCCC-ceeEEEeCCCcccEEEEecCCCEEEEEE
Q psy92 144 GFLYFNAKSELRISVLPTHLSYDAP-WPVRKVPLKCTPHFLAYHLETKTYCIVT 196 (638)
Q Consensus 144 gfl~~~~~~~L~I~~l~~~~~~~~~-~~~r~ipL~~tp~ri~y~~~~~~~~V~~ 196 (638)
-+++++.+..|.|.++.... ... -..+.+.+..+|+.|++. .+.++|++
T Consensus 106 ~~L~va~kk~i~i~~~~~~~--~~f~~~~ke~~lp~~~~~i~~~--~~~i~v~~ 155 (275)
T PF00780_consen 106 RRLCVAVKKKILIYEWNDPR--NSFSKLLKEISLPDPPSSIAFL--GNKICVGT 155 (275)
T ss_pred eEEEEEECCEEEEEEEECCc--ccccceeEEEEcCCCcEEEEEe--CCEEEEEe
Confidence 35666778899999988731 112 488999999999999999 56776665
No 92
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=74.78 E-value=1e+02 Score=31.35 Aligned_cols=66 Identities=12% Similarity=0.294 Sum_probs=51.2
Q ss_pred cccEEEEeecccCCCCcccceeEEEEEEEEeecCCCCccccCce-EEEEEEeeCCceEEEccccCeeEEEecCEEEEEEe
Q psy92 275 LRGYIALGTNYNYSEDVTCRGRILLFDIIEVVPEPGQPLTKNKI-KMIYAKEQKGPVTAICHVAGFLVTAVGQKIYIWQL 353 (638)
Q Consensus 275 ~~~~ivVGT~~~~~ed~~~~GrI~vf~i~~vvpe~g~~~t~~kL-kl~~~~~~~G~V~al~~~~g~Ll~avg~~l~v~~l 353 (638)
...+++|.. .+ +|++|++... ..+. +.+.+-.+.+++++++-++++|++|......++++
T Consensus 104 ~~~~L~va~---------kk-~i~i~~~~~~---------~~~f~~~~ke~~lp~~~~~i~~~~~~i~v~~~~~f~~idl 164 (275)
T PF00780_consen 104 GSRRLCVAV---------KK-KILIYEWNDP---------RNSFSKLLKEISLPDPPSSIAFLGNKICVGTSKGFYLIDL 164 (275)
T ss_pred cceEEEEEE---------CC-EEEEEEEECC---------cccccceeEEEEcCCCcEEEEEeCCEEEEEeCCceEEEec
Confidence 456777776 22 9999998751 1344 67777778999999999999999999999999999
Q ss_pred eCCcee
Q psy92 354 KDNDLT 359 (638)
Q Consensus 354 ~~~~L~ 359 (638)
.+....
T Consensus 165 ~~~~~~ 170 (275)
T PF00780_consen 165 NTGSPS 170 (275)
T ss_pred CCCCce
Confidence 865543
No 93
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=74.78 E-value=89 Score=30.62 Aligned_cols=126 Identities=22% Similarity=0.284 Sum_probs=72.8
Q ss_pred ceeEEEeCCC--cccEEEEecCCCEEEEEEeeecCCCcccccCCccccccCCCCCCCCCCCcccccEEEEEeCCCceeec
Q psy92 169 WPVRKVPLKC--TPHFLAYHLETKTYCIVTSTAEPSTDYYKFNGEDKELVTDPRDSRFIPPLVSQFHVSLFSPFSWEEIP 246 (638)
Q Consensus 169 ~~~r~ipL~~--tp~ri~y~~~~~~~~V~~s~~~~~~~~~~~~~e~~e~~~~~~~~~~~~p~~~~~~i~lid~~t~~~i~ 246 (638)
-++..+++.. ..+.++++|..+.++|+.... | ..+.|+|.. .+.+
T Consensus 49 ~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~---------------------------~----~~v~lyd~~-~~~i- 95 (194)
T PF08662_consen 49 IPVESIELKKEGPIHDVAWSPNGNEFAVIYGSM---------------------------P----AKVTLYDVK-GKKI- 95 (194)
T ss_pred CccceeeccCCCceEEEEECcCCCEEEEEEccC---------------------------C----cccEEEcCc-ccEe-
Confidence 5677777754 589999999999999875311 0 146666664 3332
Q ss_pred ceeecCCCceeEeEEEEEEeeccCccCCcccEEEEeecccCCCCcccceeEEEEEEEEeecCCCCccccCceEEEEEEee
Q psy92 247 QTNFPLHEWEHVLCLKNVSMEYEGTLSGLRGYIALGTNYNYSEDVTCRGRILLFDIIEVVPEPGQPLTKNKIKMIYAKEQ 326 (638)
Q Consensus 247 ~~~~~l~~~E~v~si~~v~l~~~~~~~~~~~~ivVGT~~~~~ed~~~~GrI~vf~i~~vvpe~g~~~t~~kLkl~~~~~~ 326 (638)
+.+... .+.+ +.+.. ...|+|+|..-+ ..|.|.+|++. +.+.+.+.+.
T Consensus 96 ---~~~~~~-~~n~---i~wsP------~G~~l~~~g~~n------~~G~l~~wd~~-------------~~~~i~~~~~ 143 (194)
T PF08662_consen 96 ---FSFGTQ-PRNT---ISWSP------DGRFLVLAGFGN------LNGDLEFWDVR-------------KKKKISTFEH 143 (194)
T ss_pred ---EeecCC-CceE---EEECC------CCCEEEEEEccC------CCcEEEEEECC-------------CCEEeecccc
Confidence 333332 2332 33432 347888876322 46899999875 3455655554
Q ss_pred CCceEEEc-cccCe-eEEEe-------cCEEEEEEeeCCceee
Q psy92 327 KGPVTAIC-HVAGF-LVTAV-------GQKIYIWQLKDNDLTG 360 (638)
Q Consensus 327 ~G~V~al~-~~~g~-Ll~av-------g~~l~v~~l~~~~L~~ 360 (638)
.. ++.++ .-+|+ |+++. .+.+.||.+..+.|..
T Consensus 144 ~~-~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~G~~l~~ 185 (194)
T PF08662_consen 144 SD-ATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQGRLLYK 185 (194)
T ss_pred Cc-EEEEEEcCCCCEEEEEEeccceeccccEEEEEecCeEeEe
Confidence 44 34443 33454 44443 3456788887554443
No 94
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=74.73 E-value=24 Score=31.76 Aligned_cols=54 Identities=13% Similarity=0.196 Sum_probs=43.1
Q ss_pred eeEEEEeCCCcEEEEEeCCCCcCCCCCceEEEEeeeecCcceeeEEEEeccCCCCCCCCCCCCceEEEEEeCCCcEEEEE
Q psy92 465 MGFMISDKDKNVVLFMYQPEARESNGGHRLIKKTDFHLGQHVNTFFKIRCKPSSISDAPGARSRFLTWYASLDGALGFFL 544 (638)
Q Consensus 465 l~~l~aD~~~nl~v~~~~~~~~~s~~~~~L~~~~~f~lg~~v~~~~~~~~~~~~~~~~~~~~~~~~il~~t~~GsIg~l~ 544 (638)
..++++-.+..|++|+-+. ...++...+.|+.+.... .....|+..+|+||+.-
T Consensus 16 ~eLlvGs~D~~IRvf~~~e------------~~~Ei~e~~~v~~L~~~~--------------~~~F~Y~l~NGTVGvY~ 69 (111)
T PF14783_consen 16 NELLVGSDDFEIRVFKGDE------------IVAEITETDKVTSLCSLG--------------GGRFAYALANGTVGVYD 69 (111)
T ss_pred ceEEEecCCcEEEEEeCCc------------EEEEEecccceEEEEEcC--------------CCEEEEEecCCEEEEEe
Confidence 4678888899999997543 778888899999887653 24589999999999973
No 95
>PF14779 BBS1: Ciliary BBSome complex subunit 1
Probab=74.30 E-value=14 Score=38.16 Aligned_cols=75 Identities=17% Similarity=0.247 Sum_probs=51.9
Q ss_pred CCCceeEeEEEEEEeeccCccCCcccEEEEeecccCCCCcccceeEEEEEEEEeecCCCCccccCceEEEEEEeeCCceE
Q psy92 252 LHEWEHVLCLKNVSMEYEGTLSGLRGYIALGTNYNYSEDVTCRGRILLFDIIEVVPEPGQPLTKNKIKMIYAKEQKGPVT 331 (638)
Q Consensus 252 l~~~E~v~si~~v~l~~~~~~~~~~~~ivVGT~~~~~ed~~~~GrI~vf~i~~vvpe~g~~~t~~kLkl~~~~~~~G~V~ 331 (638)
+..--.++||..+.-...+. +....+|||| -.|.||+++- .-+.++++..+.+++.
T Consensus 173 l~~~t~ITcm~tikk~~~d~--~a~scLViGT---------E~~~i~iLd~-------------~af~il~~~~lpsvPv 228 (257)
T PF14779_consen 173 LKRQTVITCMATIKKSSADE--DAVSCLVIGT---------ESGEIYILDP-------------QAFTILKQVQLPSVPV 228 (257)
T ss_pred cccCceeEEeeeecccccCC--CCcceEEEEe---------cCCeEEEECc-------------hhheeEEEEecCCCce
Confidence 34444688998877665442 3579999999 8899999972 3567888888888877
Q ss_pred EEccc------cCeeEEEe-cCEEEE
Q psy92 332 AICHV------AGFLVTAV-GQKIYI 350 (638)
Q Consensus 332 al~~~------~g~Ll~av-g~~l~v 350 (638)
.|+.. +.+|+++. +.+|++
T Consensus 229 ~i~~~G~~devdyRI~Va~Rdg~iy~ 254 (257)
T PF14779_consen 229 FISVSGQYDEVDYRIVVACRDGKIYT 254 (257)
T ss_pred EEEEEeeeeccceEEEEEeCCCEEEE
Confidence 77632 33555554 445554
No 96
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=74.11 E-value=25 Score=38.74 Aligned_cols=135 Identities=16% Similarity=0.188 Sum_probs=65.9
Q ss_pred CCCccceEEEeeecccCCC-CceEEEEEECC-cEEEEEEEecCCCCceeeEEEeccccccccCCccCCCCCCCCcceeee
Q psy92 11 AMDETIVQELLTVSLGLHG-NRPLLLVRTQH-ELLIYQAFRHPKGALKLRFKKLKVLFVSDRSKRANEQPGLPRGVRISQ 88 (638)
Q Consensus 11 ~~~~~~~~eil~~~lg~~~-~~p~L~~~~~~-~l~~Y~~~~~~~~~~~~rf~kv~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (638)
..+..+.-|-.+..+|+++ +.|.|+|.+.. .+++|...+.+.+.....|...... ...+...
T Consensus 134 ~~~~vt~ieF~vm~~~~D~ySSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~----------------~~~~i~~ 197 (395)
T PF08596_consen 134 SSSYVTSIEFSVMTLGGDGYSSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTN----------------HDSPILS 197 (395)
T ss_dssp ----EEEEEEEEEE-TTSSSEEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE------------------SS----E
T ss_pred cccCeeEEEEEEEecCCCcccceEEEEEeCCCCEEEEEEecCCCCceEEEEeecccc----------------CCCceEE
Confidence 3344444556667777654 78999999985 8999998765555566666554300 1112223
Q ss_pred EEEeeecCC-------------------ceeEEecCCCCeEEEEecCCceEEEecCCCCCccEEecc---cCCCCCCcEE
Q psy92 89 MRYFSNIAG-------------------YQGVFLCGPHPAWLFLTSRGELRAHPMTIDGPVSTLAPF---HNVNCPRGFL 146 (638)
Q Consensus 89 l~~f~~~~g-------------------~~~Vf~~g~~P~~i~~~~~~~l~~~pl~~~~~v~~~a~F---~~~~~~~gfl 146 (638)
+.+|..-.| ...+++++++-.-++.--+++....-.+ +......+.| .+..-..+++
T Consensus 198 I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~~~~~~k~~~K~~~-~~~~~~~~~vv~~~~~~~~~~Lv 276 (395)
T PF08596_consen 198 IIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRVFKPPKSKGAHKSFD-DPFLCSSASVVPTISRNGGYCLV 276 (395)
T ss_dssp EEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE-TT---EEEEE-S-S-EEEEEEEEEEEE-EEEEEEEE
T ss_pred EEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEEEeCCCCcccceeec-cccccceEEEEeecccCCceEEE
Confidence 444421111 1246667777766665444444322221 1122222233 2211123467
Q ss_pred EEEcCCeEEEEEeCCC
Q psy92 147 YFNAKSELRISVLPTH 162 (638)
Q Consensus 147 ~~~~~~~L~I~~l~~~ 162 (638)
++.+++.+++..||..
T Consensus 277 ~l~~~G~i~i~SLP~L 292 (395)
T PF08596_consen 277 CLFNNGSIRIYSLPSL 292 (395)
T ss_dssp EEETTSEEEEEETTT-
T ss_pred EEECCCcEEEEECCCc
Confidence 7788999999999984
No 97
>KOG4441|consensus
Probab=73.27 E-value=69 Score=37.15 Aligned_cols=103 Identities=19% Similarity=0.191 Sum_probs=68.1
Q ss_pred CceEEEEEEeeCCceEEEccccCeeEEEec--------CEEEEEEeeCCceeeeEEeecceeEEEEeeecCEEE-Eeecc
Q psy92 316 NKIKMIYAKEQKGPVTAICHVAGFLVTAVG--------QKIYIWQLKDNDLTGIAFIDTEVYIASMVSVKNLIL-VGDYA 386 (638)
Q Consensus 316 ~kLkl~~~~~~~G~V~al~~~~g~Ll~avg--------~~l~v~~l~~~~L~~~a~~d~~~~i~~i~~~~~~Il-vgD~~ 386 (638)
.+...+......-.-.+++.++|+|.+.-| .++..|+...+++..++.+...=.-..+.+.+++|+ +|...
T Consensus 406 ~~W~~va~m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~~~~~iYvvGG~~ 485 (571)
T KOG4441|consen 406 NKWTPVAPMLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVAVLNGKIYVVGGFD 485 (571)
T ss_pred CcccccCCCCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccccceEEEECCEEEEECCcc
Confidence 456666655555555667788999988887 577889988888777765544333334667777665 55533
Q ss_pred C---cEEEEEEeccCCeEEEEeccCCCcceeeeec
Q psy92 387 R---SIALLRYQPEYRTLSLVARDYKPTQPNSKGY 418 (638)
Q Consensus 387 ~---Sv~ll~~~~~~~~l~~~arD~~~~~v~~~~~ 418 (638)
. --++-+|+++.++-..++.-..++....+..
T Consensus 486 ~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g~~~ 520 (571)
T KOG4441|consen 486 GTSALSSVERYDPETNQWTMVAPMTSPRSAVGVVV 520 (571)
T ss_pred CCCccceEEEEcCCCCceeEcccCccccccccEEE
Confidence 2 1115678999998888876666666555444
No 98
>KOG2055|consensus
Probab=73.03 E-value=1.6e+02 Score=32.83 Aligned_cols=142 Identities=15% Similarity=0.152 Sum_probs=78.7
Q ss_pred eecccCCCCceEEEEEEC-CcEEEEEEEecCCC-CceeeEEEeccccccccCCccCCCCCCCCcceeeeEEEeeecCCce
Q psy92 22 TVSLGLHGNRPLLLVRTQ-HELLIYQAFRHPKG-ALKLRFKKLKVLFVSDRSKRANEQPGLPRGVRISQMRYFSNIAGYQ 99 (638)
Q Consensus 22 ~~~lg~~~~~p~L~~~~~-~~l~~Y~~~~~~~~-~~~~rf~kv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~f~~~~g~~ 99 (638)
.+.| +...|.|++.-- +.+-||+.-.--.. --+++|+|-+ .+=-.|.. +|.+
T Consensus 218 sv~F--Hp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fP-----------------------i~~a~f~p-~G~~ 271 (514)
T KOG2055|consen 218 SVQF--HPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFP-----------------------IQKAEFAP-NGHS 271 (514)
T ss_pred EEEe--cCCCceEEEecCCCcEEEEEecCccChhheeeeeccCc-----------------------cceeeecC-CCce
Confidence 3455 346787776654 48888877521110 1134444432 22222322 5777
Q ss_pred eEEecCCCCeEEEEec--CCceEEEecCCCCCccEEecccCCCCCCcEEEEE-cCCeEEEEEeCCCCCCCCCceeEEEeC
Q psy92 100 GVFLCGPHPAWLFLTS--RGELRAHPMTIDGPVSTLAPFHNVNCPRGFLYFN-AKSELRISVLPTHLSYDAPWPVRKVPL 176 (638)
Q Consensus 100 ~Vf~~g~~P~~i~~~~--~~~l~~~pl~~~~~v~~~a~F~~~~~~~gfl~~~-~~~~L~I~~l~~~~~~~~~~~~r~ipL 176 (638)
-||..|.++++..|.- ..--.++|+.. .+-.++-.|--..|.+ ||+++ ..+-|.+...-+ +-.+.++.+
T Consensus 272 ~i~~s~rrky~ysyDle~ak~~k~~~~~g-~e~~~~e~FeVShd~~-fia~~G~~G~I~lLhakT------~eli~s~Ki 343 (514)
T KOG2055|consen 272 VIFTSGRRKYLYSYDLETAKVTKLKPPYG-VEEKSMERFEVSHDSN-FIAIAGNNGHIHLLHAKT------KELITSFKI 343 (514)
T ss_pred EEEecccceEEEEeeccccccccccCCCC-cccchhheeEecCCCC-eEEEcccCceEEeehhhh------hhhhheeee
Confidence 8999998886555542 23344455532 1222444453333333 67764 234444443333 466778888
Q ss_pred CCcccEEEEecCCCEEEEEEe
Q psy92 177 KCTPHFLAYHLETKTYCIVTS 197 (638)
Q Consensus 177 ~~tp~ri~y~~~~~~~~V~~s 197 (638)
....+-++++..++.+++++.
T Consensus 344 eG~v~~~~fsSdsk~l~~~~~ 364 (514)
T KOG2055|consen 344 EGVVSDFTFSSDSKELLASGG 364 (514)
T ss_pred ccEEeeEEEecCCcEEEEEcC
Confidence 999999999988887776653
No 99
>KOG1587|consensus
Probab=72.89 E-value=30 Score=39.85 Aligned_cols=119 Identities=14% Similarity=0.161 Sum_probs=64.0
Q ss_pred eeEeEEEEEEeeccCccCCcccEEEEeecccCCCCcccceeEEEEEEEEeecCCCCccccCceEEE-EEEeeCCceEEEc
Q psy92 256 EHVLCLKNVSMEYEGTLSGLRGYIALGTNYNYSEDVTCRGRILLFDIIEVVPEPGQPLTKNKIKMI-YAKEQKGPVTAIC 334 (638)
Q Consensus 256 E~v~si~~v~l~~~~~~~~~~~~ivVGT~~~~~ed~~~~GrI~vf~i~~vvpe~g~~~t~~kLkl~-~~~~~~G~V~al~ 334 (638)
+...+...+.|.... -..++||| -.|.|+.-.-...-+.+ ....|.+ +-.-..|+|+++.
T Consensus 345 ~~~~~~t~~~F~~~~-----p~~FiVGT---------e~G~v~~~~r~g~~~~~-----~~~~~~~~~~~~h~g~v~~v~ 405 (555)
T KOG1587|consen 345 SKAVGATSLKFEPTD-----PNHFIVGT---------EEGKVYKGCRKGYTPAP-----EVSYKGHSTFITHIGPVYAVS 405 (555)
T ss_pred ccccceeeEeeccCC-----CceEEEEc---------CCcEEEEEeccCCcccc-----cccccccccccccCcceEeee
Confidence 344555666665433 46688999 66776652211111111 0111212 1122479999995
Q ss_pred --cccCeeEEEecC-EEEEEEee-CCceeeeEEe-ecceeEEEEe---eecCEEEEeeccCcEEEEEEe
Q psy92 335 --HVAGFLVTAVGQ-KIYIWQLK-DNDLTGIAFI-DTEVYIASMV---SVKNLILVGDYARSIALLRYQ 395 (638)
Q Consensus 335 --~~~g~Ll~avg~-~l~v~~l~-~~~L~~~a~~-d~~~~i~~i~---~~~~~IlvgD~~~Sv~ll~~~ 395 (638)
.|.-+++.++|. .+++|.-+ +.. +.-.+ +.+.+++++. +.--.++++|.+--+-+.-+.
T Consensus 406 ~nPF~~k~fls~gDW~vriWs~~~~~~--Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl 472 (555)
T KOG1587|consen 406 RNPFYPKNFLSVGDWTVRIWSEDVIAS--PLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLL 472 (555)
T ss_pred cCCCccceeeeeccceeEeccccCCCC--cchhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhh
Confidence 677777666665 88889776 332 11112 2233455544 234566788877777776553
No 100
>KOG0771|consensus
Probab=72.32 E-value=36 Score=37.06 Aligned_cols=48 Identities=10% Similarity=0.083 Sum_probs=35.2
Q ss_pred EEEEee--ecCEEEEeeccCcEEEEEEeccCCeEEEEeccCCCcceeeeecc
Q psy92 370 IASMVS--VKNLILVGDYARSIALLRYQPEYRTLSLVARDYKPTQPNSKGYY 419 (638)
Q Consensus 370 i~~i~~--~~~~IlvgD~~~Sv~ll~~~~~~~~l~~~arD~~~~~v~~~~~l 419 (638)
|+++.+ .|.|+.+|..--||.++.- ..-++..+.+-.+..-||.++|+
T Consensus 284 iSsl~VS~dGkf~AlGT~dGsVai~~~--~~lq~~~~vk~aH~~~VT~ltF~ 333 (398)
T KOG0771|consen 284 ISSLAVSDDGKFLALGTMDGSVAIYDA--KSLQRLQYVKEAHLGFVTGLTFS 333 (398)
T ss_pred ceeEEEcCCCcEEEEeccCCcEEEEEe--ceeeeeEeehhhheeeeeeEEEc
Confidence 444443 4789999999888888753 33456666677777789999998
No 101
>KOG0274|consensus
Probab=71.32 E-value=72 Score=36.72 Aligned_cols=92 Identities=18% Similarity=0.309 Sum_probs=55.3
Q ss_pred ccEEEEeecccCCCCcccceeEEEEEEEEeecCCCCccccCceEEEEEEe-eCCceEEEcccc-CeeEEE-ecCEEEEEE
Q psy92 276 RGYIALGTNYNYSEDVTCRGRILLFDIIEVVPEPGQPLTKNKIKMIYAKE-QKGPVTAICHVA-GFLVTA-VGQKIYIWQ 352 (638)
Q Consensus 276 ~~~ivVGT~~~~~ed~~~~GrI~vf~i~~vvpe~g~~~t~~kLkl~~~~~-~~G~V~al~~~~-g~Ll~a-vg~~l~v~~ 352 (638)
..+++.|+ ..|.|.||++.. .+.++.-. ..+.|+++.--+ .+++-| .-..|++|+
T Consensus 341 ~~~lvsgs---------~d~~v~VW~~~~-------------~~cl~sl~gH~~~V~sl~~~~~~~~~Sgs~D~~IkvWd 398 (537)
T KOG0274|consen 341 EPLLVSGS---------YDGTVKVWDPRT-------------GKCLKSLSGHTGRVYSLIVDSENRLLSGSLDTTIKVWD 398 (537)
T ss_pred CCEEEEEe---------cCceEEEEEhhh-------------ceeeeeecCCcceEEEEEecCcceEEeeeeccceEeec
Confidence 57888888 788999999852 33343322 679999985333 456555 445699999
Q ss_pred eeCC-ceeeeEEeec-ceeEEEEeeecCEEEEeeccCc-EEEE
Q psy92 353 LKDN-DLTGIAFIDT-EVYIASMVSVKNLILVGDYARS-IALL 392 (638)
Q Consensus 353 l~~~-~L~~~a~~d~-~~~i~~i~~~~~~IlvgD~~~S-v~ll 392 (638)
+... +.. ..+.. ...+.++...+++ +++..+++ |.+.
T Consensus 399 l~~~~~c~--~tl~~h~~~v~~l~~~~~~-Lvs~~aD~~Ik~W 438 (537)
T KOG0274|consen 399 LRTKRKCI--HTLQGHTSLVSSLLLRDNF-LVSSSADGTIKLW 438 (537)
T ss_pred CCchhhhh--hhhcCCcccccccccccce-eEeccccccEEEe
Confidence 9976 321 12222 2333445455555 45555555 5554
No 102
>KOG2445|consensus
Probab=71.30 E-value=58 Score=34.47 Aligned_cols=67 Identities=21% Similarity=0.353 Sum_probs=47.5
Q ss_pred cccEEEEeecccCCCCcccceeEEEEEEEEeecCCCCccccCceEEEEEE-eeCCceEEEc--cccC----eeEEEecCE
Q psy92 275 LRGYIALGTNYNYSEDVTCRGRILLFDIIEVVPEPGQPLTKNKIKMIYAK-EQKGPVTAIC--HVAG----FLVTAVGQK 347 (638)
Q Consensus 275 ~~~~ivVGT~~~~~ed~~~~GrI~vf~i~~vvpe~g~~~t~~kLkl~~~~-~~~G~V~al~--~~~g----~Ll~avg~~ 347 (638)
..++||||. .|+.+..++.++|+.++. .+|...+.+- ....||++|+ +--| .|.+|.+.-
T Consensus 183 ~~p~iAvgs----~e~a~~~~~~~Iye~~e~---------~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg 249 (361)
T KOG2445|consen 183 HEPLIAVGS----DEDAPHLNKVKIYEYNEN---------GRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG 249 (361)
T ss_pred cCceEEEEc----ccCCccccceEEEEecCC---------cceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc
Confidence 579999998 446678999999998862 2466655543 4678999997 3333 244455555
Q ss_pred EEEEEee
Q psy92 348 IYIWQLK 354 (638)
Q Consensus 348 l~v~~l~ 354 (638)
|+||.++
T Consensus 250 v~I~~v~ 256 (361)
T KOG2445|consen 250 VRIFKVK 256 (361)
T ss_pred EEEEEEe
Confidence 9999987
No 103
>KOG1407|consensus
Probab=71.20 E-value=1.4e+02 Score=31.16 Aligned_cols=165 Identities=15% Similarity=0.166 Sum_probs=89.4
Q ss_pred CCcEEEEEcCCeEEEEEeCCCCCCCCCceeEEEeCCCcccEEEEecCCCEEEEEEeeecCC----Cccc-----ccCCcc
Q psy92 142 PRGFLYFNAKSELRISVLPTHLSYDAPWPVRKVPLKCTPHFLAYHLETKTYCIVTSTAEPS----TDYY-----KFNGED 212 (638)
Q Consensus 142 ~~gfl~~~~~~~L~I~~l~~~~~~~~~~~~r~ipL~~tp~ri~y~~~~~~~~V~~s~~~~~----~~~~-----~~~~e~ 212 (638)
|+-|.....+..+++--+-. .-++..|...+---.|+|+|..+.++++--+.... +.+. ++.-|.
T Consensus 77 ~d~~atas~dk~ir~wd~r~------~k~~~~i~~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ 150 (313)
T KOG1407|consen 77 PDLFATASGDKTIRIWDIRS------GKCTARIETKGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKFEV 150 (313)
T ss_pred CcceEEecCCceEEEEEecc------CcEEEEeeccCcceEEEEcCCCCEEEEecCcccEEEEEecccceeehhccccee
Confidence 34444443455554433322 35666777777677899999888777654322111 0000 111122
Q ss_pred ccccCCCCCCCCCCCcccccEEEEEeCCCceeecceeecCCCceeEeEEEEEEeeccCccCCcccEEEEeecccCCCCcc
Q psy92 213 KELVTDPRDSRFIPPLVSQFHVSLFSPFSWEEIPQTNFPLHEWEHVLCLKNVSMEYEGTLSGLRGYIALGTNYNYSEDVT 292 (638)
Q Consensus 213 ~e~~~~~~~~~~~~p~~~~~~i~lid~~t~~~i~~~~~~l~~~E~v~si~~v~l~~~~~~~~~~~~ivVGT~~~~~ed~~ 292 (638)
.|.... .+..++.-+..-+++++++--+.+.+. ++.-.+ ..|+| ++|.. ...|+++|.+
T Consensus 151 ne~~w~-~~nd~Fflt~GlG~v~ILsypsLkpv~--si~AH~---snCic-I~f~p------~GryfA~GsA-------- 209 (313)
T KOG1407|consen 151 NEISWN-NSNDLFFLTNGLGCVEILSYPSLKPVQ--SIKAHP---SNCIC-IEFDP------DGRYFATGSA-------- 209 (313)
T ss_pred eeeeec-CCCCEEEEecCCceEEEEecccccccc--ccccCC---cceEE-EEECC------CCceEeeccc--------
Confidence 222111 223333444556899999854555543 343333 44444 45643 3589999984
Q ss_pred cceeEEEEEEEEeecCCCCccccCceEEEEEEeeCCceEEEc-cccCeeEEEecC
Q psy92 293 CRGRILLFDIIEVVPEPGQPLTKNKIKMIYAKEQKGPVTAIC-HVAGFLVTAVGQ 346 (638)
Q Consensus 293 ~~GrI~vf~i~~vvpe~g~~~t~~kLkl~~~~~~~G~V~al~-~~~g~Ll~avg~ 346 (638)
..-+-+|++.+. +=+..-...+-||..|. ..+|++||....
T Consensus 210 -DAlvSLWD~~EL------------iC~R~isRldwpVRTlSFS~dg~~lASaSE 251 (313)
T KOG1407|consen 210 -DALVSLWDVDEL------------ICERCISRLDWPVRTLSFSHDGRMLASASE 251 (313)
T ss_pred -cceeeccChhHh------------hhheeeccccCceEEEEeccCcceeeccCc
Confidence 345567777652 11222334678999987 678888876654
No 104
>KOG0299|consensus
Probab=70.36 E-value=60 Score=35.93 Aligned_cols=137 Identities=15% Similarity=0.332 Sum_probs=90.0
Q ss_pred ccEEEEeecccCCCCccccee-EEEEEEEEeecCCCCccccCceEEEEE-EeeCCceEEEccccC---eeEEEecCEEEE
Q psy92 276 RGYIALGTNYNYSEDVTCRGR-ILLFDIIEVVPEPGQPLTKNKIKMIYA-KEQKGPVTAICHVAG---FLVTAVGQKIYI 350 (638)
Q Consensus 276 ~~~ivVGT~~~~~ed~~~~Gr-I~vf~i~~vvpe~g~~~t~~kLkl~~~-~~~~G~V~al~~~~g---~Ll~avg~~l~v 350 (638)
..||+-|- +|+ |+||+... ++.++. +..+|+|.++|--.| ...++.-.++.+
T Consensus 214 gkylatgg----------~d~~v~Iw~~~t-------------~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkv 270 (479)
T KOG0299|consen 214 GKYLATGG----------RDRHVQIWDCDT-------------LEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKV 270 (479)
T ss_pred CcEEEecC----------CCceEEEecCcc-------------cchhhcccccccceeeeeeecCccceeeeecCCceEE
Confidence 47777663 344 45887653 344443 456899999986554 455667779999
Q ss_pred EEeeCCceeeeEEeecceeEEEEeee--cCEEEEeeccCcEEEEEEeccCCeEEEEeccCCCcceeeeecccCCCCCccc
Q psy92 351 WQLKDNDLTGIAFIDTEVYIASMVSV--KNLILVGDYARSIALLRYQPEYRTLSLVARDYKPTQPNSKGYYAGNPSRGII 428 (638)
Q Consensus 351 ~~l~~~~L~~~a~~d~~~~i~~i~~~--~~~IlvgD~~~Sv~ll~~~~~~~~l~~~arD~~~~~v~~~~~l~~~~~~~~v 428 (638)
|.++....+.. ++--+.-|.+|... .-.+-||-.-+++-+++. ++..+|+..+- .-.+-|+.|+
T Consensus 271 w~~~~~s~vet-lyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi-~eesqlifrg~---~~sidcv~~I--------- 336 (479)
T KOG0299|consen 271 WSIDQLSYVET-LYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKI-PEESQLIFRGG---EGSIDCVAFI--------- 336 (479)
T ss_pred EehhHhHHHHH-HhCCccceeeechhcccceEEeccccceeEEEec-cccceeeeeCC---CCCeeeEEEe---------
Confidence 99986554432 23345556666644 456668888889999887 66677777665 2234466675
Q ss_pred ccccceeeeeeccccccccccccCCcccccccCCCceeEEEEeCCCcEEEEEeCC
Q psy92 429 DGSLVWKFLQLSLGERLEICKKIGSKHNDILDEFSSMGFMISDKDKNVVLFMYQP 483 (638)
Q Consensus 429 d~~~~~~~~~~~~gd~~~~~~r~~~~~~~~~~~~~~l~~l~aD~~~nl~v~~~~~ 483 (638)
+ +. +|+..-.+|+|.++....
T Consensus 337 n--------------------------------~~--HfvsGSdnG~IaLWs~~K 357 (479)
T KOG0299|consen 337 N--------------------------------DE--HFVSGSDNGSIALWSLLK 357 (479)
T ss_pred c--------------------------------cc--ceeeccCCceEEEeeecc
Confidence 6 32 588888899998876654
No 105
>KOG0316|consensus
Probab=70.31 E-value=1.3e+02 Score=30.86 Aligned_cols=139 Identities=18% Similarity=0.265 Sum_probs=87.2
Q ss_pred ecCEEEEEEeeCCceeeeEEeec-ceeEEEEeeecCEEEEeeccCcEEEEEEeccCCeEEEEeccCCCcceeeeecccCC
Q psy92 344 VGQKIYIWQLKDNDLTGIAFIDT-EVYIASMVSVKNLILVGDYARSIALLRYQPEYRTLSLVARDYKPTQPNSKGYYAGN 422 (638)
Q Consensus 344 vg~~l~v~~l~~~~L~~~a~~d~-~~~i~~i~~~~~~IlvgD~~~Sv~ll~~~~~~~~l~~~arD~~~~~v~~~~~l~~~ 422 (638)
.-.++++|+-......|+..++. .--+.+|.+-+..|+.|-+---+-.+..+ ..+ +..||....++++.|-
T Consensus 121 fD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~~heIvaGS~DGtvRtydiR--~G~---l~sDy~g~pit~vs~s--- 192 (307)
T KOG0316|consen 121 FDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVAEHEIVAGSVDGTVRTYDIR--KGT---LSSDYFGHPITSVSFS--- 192 (307)
T ss_pred ccceeEEEEcccCCCCccchhhhhcCceeEEEecccEEEeeccCCcEEEEEee--cce---eehhhcCCcceeEEec---
Confidence 44589999999888888887754 34577888889999998766655443332 233 4568888889998885
Q ss_pred CCCcccccccceeeeeeccccccccccccCCcccccccCCCceeEEEEeCCCcEEEEEeCCCCcCCCCCceEEEEeeeec
Q psy92 423 PSRGIIDGSLVWKFLQLSLGERLEICKKIGSKHNDILDEFSSMGFMISDKDKNVVLFMYQPEARESNGGHRLIKKTDFHL 502 (638)
Q Consensus 423 ~~~~~vd~~~~~~~~~~~~gd~~~~~~r~~~~~~~~~~~~~~l~~l~aD~~~nl~v~~~~~~~~~s~~~~~L~~~~~f~l 502 (638)
-| .+ ..|++-.++.|+++.+... +|... +.
T Consensus 193 -----~d--------------------------------~n--c~La~~l~stlrLlDk~tG--------klL~s---Yk 222 (307)
T KOG0316|consen 193 -----KD--------------------------------GN--CSLASSLDSTLRLLDKETG--------KLLKS---YK 222 (307)
T ss_pred -----CC--------------------------------CC--EEEEeeccceeeecccchh--------HHHHH---hc
Confidence 33 33 4778888899998877542 11110 11
Q ss_pred CcceeeEEEEeccCCCCCCCCCCCCceEEEEEeCCCcEEEEEeCChh
Q psy92 503 GQHVNTFFKIRCKPSSISDAPGARSRFLTWYASLDGALGFFLPLPEK 549 (638)
Q Consensus 503 g~~v~~~~~~~~~~~~~~~~~~~~~~~~il~~t~~GsIg~l~pl~~~ 549 (638)
|..-+.+ +..+.- ......++.|+.||-++..-.+++.
T Consensus 223 Ghkn~ey-kldc~l--------~qsdthV~sgSEDG~Vy~wdLvd~~ 260 (307)
T KOG0316|consen 223 GHKNMEY-KLDCCL--------NQSDTHVFSGSEDGKVYFWDLVDET 260 (307)
T ss_pred cccccee-eeeeee--------cccceeEEeccCCceEEEEEeccce
Confidence 2111112 222210 0112357778888888887776655
No 106
>KOG2048|consensus
Probab=69.98 E-value=1.7e+02 Score=33.99 Aligned_cols=81 Identities=14% Similarity=0.193 Sum_probs=49.7
Q ss_pred ceEEEEEEeeCCceEEEccccCeeEEEecCEEEEEEeeCCceeeeEEe-ec-----ceeEEEEeeecCEEEEeeccCcEE
Q psy92 317 KIKMIYAKEQKGPVTAICHVAGFLVTAVGQKIYIWQLKDNDLTGIAFI-DT-----EVYIASMVSVKNLILVGDYARSIA 390 (638)
Q Consensus 317 kLkl~~~~~~~G~V~al~~~~g~Ll~avg~~l~v~~l~~~~L~~~a~~-d~-----~~~i~~i~~~~~~IlvgD~~~Sv~ 390 (638)
=+++..+++.+=.+.|+++....|.++.=..+.+|.++-..++++.-. +. .....+....+|.+++.- .....
T Consensus 374 Llkl~~k~~~nIs~~aiSPdg~~Ia~st~~~~~iy~L~~~~~vk~~~v~~~~~~~~~a~~i~ftid~~k~~~~s-~~~~~ 452 (691)
T KOG2048|consen 374 LLKLFTKEKENISCAAISPDGNLIAISTVSRTKIYRLQPDPNVKVINVDDVPLALLDASAISFTIDKNKLFLVS-KNIFS 452 (691)
T ss_pred heeeecCCccceeeeccCCCCCEEEEeeccceEEEEeccCcceeEEEeccchhhhccceeeEEEecCceEEEEe-cccce
Confidence 355555666677888999999999888888999999984333333322 22 222333445677666554 34444
Q ss_pred EEEEeccC
Q psy92 391 LLRYQPEY 398 (638)
Q Consensus 391 ll~~~~~~ 398 (638)
+..++.+.
T Consensus 453 le~~el~~ 460 (691)
T KOG2048|consen 453 LEEFELET 460 (691)
T ss_pred eEEEEecC
Confidence 55554443
No 107
>KOG0269|consensus
Probab=69.81 E-value=22 Score=41.62 Aligned_cols=71 Identities=20% Similarity=0.323 Sum_probs=45.3
Q ss_pred cceeEEEEEEEEeecCCCCccccCceEEEEEEeeCCceEEEccc-cCeeEEEecC--EEEEEEeeCCceeeeEEeeccee
Q psy92 293 CRGRILLFDIIEVVPEPGQPLTKNKIKMIYAKEQKGPVTAICHV-AGFLVTAVGQ--KIYIWQLKDNDLTGIAFIDTEVY 369 (638)
Q Consensus 293 ~~GrI~vf~i~~vvpe~g~~~t~~kLkl~~~~~~~G~V~al~~~-~g~Ll~avg~--~l~v~~l~~~~L~~~a~~d~~~~ 369 (638)
-.|.+..||+.. |.+. .++ ....+|||.|+.-- ++-+||.-|. ++.||++.+.+..++-.+.+-..
T Consensus 197 dsG~lqlWDlRq----p~r~----~~k---~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tInTiap 265 (839)
T KOG0269|consen 197 DSGYLQLWDLRQ----PDRC----EKK---LTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTINTIAP 265 (839)
T ss_pred CCceEEEeeccC----chhH----HHH---hhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCccceeEEeecce
Confidence 689999999975 3332 111 23468999999633 4445555443 79999999776655555555444
Q ss_pred EEEEe
Q psy92 370 IASMV 374 (638)
Q Consensus 370 i~~i~ 374 (638)
+..++
T Consensus 266 v~rVk 270 (839)
T KOG0269|consen 266 VGRVK 270 (839)
T ss_pred eeeee
Confidence 44444
No 108
>KOG0310|consensus
Probab=69.67 E-value=1.9e+02 Score=32.33 Aligned_cols=89 Identities=16% Similarity=0.354 Sum_probs=61.9
Q ss_pred cceeEEEEEEEEeecCCCCccccCceEEEEEEeeCCceEEEccccC--eeEEEecCEEEEEEee-CCceeeeEEeeccee
Q psy92 293 CRGRILLFDIIEVVPEPGQPLTKNKIKMIYAKEQKGPVTAICHVAG--FLVTAVGQKIYIWQLK-DNDLTGIAFIDTEVY 369 (638)
Q Consensus 293 ~~GrI~vf~i~~vvpe~g~~~t~~kLkl~~~~~~~G~V~al~~~~g--~Ll~avg~~l~v~~l~-~~~L~~~a~~d~~~~ 369 (638)
..|.|.+|++.. +-.-+.+-...-||-.++.+.+ .++.|-|+.+.||++- .+++...-+ .-+--
T Consensus 174 YDg~vrl~DtR~------------~~~~v~elnhg~pVe~vl~lpsgs~iasAgGn~vkVWDl~~G~qll~~~~-~H~Kt 240 (487)
T KOG0310|consen 174 YDGKVRLWDTRS------------LTSRVVELNHGCPVESVLALPSGSLIASAGGNSVKVWDLTTGGQLLTSMF-NHNKT 240 (487)
T ss_pred CCceEEEEEecc------------CCceeEEecCCCceeeEEEcCCCCEEEEcCCCeEEEEEecCCceehhhhh-cccce
Confidence 679999999864 1134666677789999988765 5667788999999998 455543222 23345
Q ss_pred EEEEeee--cCEEEEeeccCcEEEEEE
Q psy92 370 IASMVSV--KNLILVGDYARSIALLRY 394 (638)
Q Consensus 370 i~~i~~~--~~~IlvgD~~~Sv~ll~~ 394 (638)
||++... +.+++-|-+-+-|-++.+
T Consensus 241 VTcL~l~s~~~rLlS~sLD~~VKVfd~ 267 (487)
T KOG0310|consen 241 VTCLRLASDSTRLLSGSLDRHVKVFDT 267 (487)
T ss_pred EEEEEeecCCceEeecccccceEEEEc
Confidence 6776654 368888877777877764
No 109
>KOG3914|consensus
Probab=67.81 E-value=18 Score=39.18 Aligned_cols=92 Identities=11% Similarity=0.174 Sum_probs=57.1
Q ss_pred cCEEEEeeccCcEEEEEEeccCCeEEEEeccCCCcceeeeecccCCCCCcccccccceeeeeecccccccc-----cccc
Q psy92 377 KNLILVGDYARSIALLRYQPEYRTLSLVARDYKPTQPNSKGYYAGNPSRGIIDGSLVWKFLQLSLGERLEI-----CKKI 451 (638)
Q Consensus 377 ~~~IlvgD~~~Sv~ll~~~~~~~~l~~~arD~~~~~v~~~~~l~~~~~~~~vd~~~~~~~~~~~~gd~~~~-----~~r~ 451 (638)
+.+++++|.-+...++-|...+....++-.-..++..+++.|+ -+ ..++.++||+|. ++..
T Consensus 74 ~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~--------~~------~~sv~v~dkagD~~~~di~s~ 139 (390)
T KOG3914|consen 74 GRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFI--------RE------DTSVLVADKAGDVYSFDILSA 139 (390)
T ss_pred ceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeee--------ec------cceEEEEeecCCceeeeeecc
Confidence 4577888888888888887665444444444444445555564 23 567777888887 2221
Q ss_pred C------------CcccccccCCCceeEEEEeCCCcEEEEEeCC
Q psy92 452 G------------SKHNDILDEFSSMGFMISDKDKNVVLFMYQP 483 (638)
Q Consensus 452 ~------------~~~~~~~~~~~~l~~l~aD~~~nl~v~~~~~ 483 (638)
+ .-.+-.+..|.+ .++.||++..|++.+|+.
T Consensus 140 ~~~~~~~~lGhvSml~dVavS~D~~-~IitaDRDEkIRvs~ypa 182 (390)
T KOG3914|consen 140 DSGRCEPILGHVSMLLDVAVSPDDQ-FIITADRDEKIRVSRYPA 182 (390)
T ss_pred cccCcchhhhhhhhhheeeecCCCC-EEEEecCCceEEEEecCc
Confidence 1 111111222333 699999999999999964
No 110
>KOG0270|consensus
Probab=67.58 E-value=1e+02 Score=34.08 Aligned_cols=90 Identities=19% Similarity=0.330 Sum_probs=47.8
Q ss_pred eeEeEEEEEEeeccCccCCcccEEEEeecccCCCCcccceeEEEEEEEEeec-CC----CCccccCceEEEEEE-----e
Q psy92 256 EHVLCLKNVSMEYEGTLSGLRGYIALGTNYNYSEDVTCRGRILLFDIIEVVP-EP----GQPLTKNKIKMIYAK-----E 325 (638)
Q Consensus 256 E~v~si~~v~l~~~~~~~~~~~~ivVGT~~~~~ed~~~~GrI~vf~i~~vvp-e~----g~~~t~~kLkl~~~~-----~ 325 (638)
+..+|++-+.... ...+.-+|+|||| -.--|-||++.-+-+ .| |..+ .++.+..-++ .
T Consensus 174 afPLC~ewld~~~--~~~~~gNyvAiGt---------mdp~IeIWDLDI~d~v~P~~~LGs~~-sk~~~k~~k~~~~~~g 241 (463)
T KOG0270|consen 174 AFPLCIEWLDHGS--KSGGAGNYVAIGT---------MDPEIEIWDLDIVDAVLPCVTLGSKA-SKKKKKKGKRSNSASG 241 (463)
T ss_pred CcchhhhhhhcCC--CCCCCcceEEEec---------cCceeEEeccccccccccceeechhh-hhhhhhhccccccccc
Confidence 4567777665532 2234668999999 333788888764311 12 2111 1111111111 2
Q ss_pred eCCceEEEccccC--eeEEE--ecCEEEEEEeeCCc
Q psy92 326 QKGPVTAICHVAG--FLVTA--VGQKIYIWQLKDND 357 (638)
Q Consensus 326 ~~G~V~al~~~~g--~Ll~a--vg~~l~v~~l~~~~ 357 (638)
...+|-+|..-.. .+||. .-++|.+|++...+
T Consensus 242 HTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~ 277 (463)
T KOG0270|consen 242 HTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGK 277 (463)
T ss_pred chHHHHHHHhccccceeEEecCCCceEEEEEcCCCC
Confidence 3456667654322 34444 34599999998554
No 111
>KOG0268|consensus
Probab=67.56 E-value=1.7e+02 Score=31.77 Aligned_cols=92 Identities=15% Similarity=0.314 Sum_probs=51.2
Q ss_pred cceeEEEEEEEEeecCCCCccccCceEEEEEEeeCCceEEEccccCeeEEEecC--EEEEEEeeCCceeee-EEeeccee
Q psy92 293 CRGRILLFDIIEVVPEPGQPLTKNKIKMIYAKEQKGPVTAICHVAGFLVTAVGQ--KIYIWQLKDNDLTGI-AFIDTEVY 369 (638)
Q Consensus 293 ~~GrI~vf~i~~vvpe~g~~~t~~kLkl~~~~~~~G~V~al~~~~g~Ll~avg~--~l~v~~l~~~~L~~~-a~~d~~~~ 369 (638)
+.+.|++||... +.|. .|+.+-. ..++. |-.+ .++.+++.+. .+|.|++..=+ .+. .+.|--+-
T Consensus 208 sDrsIvLyD~R~-----~~Pl--~KVi~~m--RTN~I--swnP-eafnF~~a~ED~nlY~~DmR~l~-~p~~v~~dhvsA 274 (433)
T KOG0268|consen 208 SDRSIVLYDLRQ-----ASPL--KKVILTM--RTNTI--CWNP-EAFNFVAANEDHNLYTYDMRNLS-RPLNVHKDHVSA 274 (433)
T ss_pred cCCceEEEeccc-----CCcc--ceeeeec--cccce--ecCc-cccceeeccccccceehhhhhhc-ccchhhccccee
Confidence 678999999976 4443 2222221 22221 1224 5555555444 67777776211 011 12233344
Q ss_pred EEEEe--eecCEEEEeeccCcEEEEEEecc
Q psy92 370 IASMV--SVKNLILVGDYARSIALLRYQPE 397 (638)
Q Consensus 370 i~~i~--~~~~~IlvgD~~~Sv~ll~~~~~ 397 (638)
+.++. ..|.-++-|-.-+||-++..++.
T Consensus 275 V~dVdfsptG~EfvsgsyDksIRIf~~~~~ 304 (433)
T KOG0268|consen 275 VMDVDFSPTGQEFVSGSYDKSIRIFPVNHG 304 (433)
T ss_pred EEEeccCCCcchhccccccceEEEeecCCC
Confidence 44444 34778889999999999988664
No 112
>PHA03098 kelch-like protein; Provisional
Probab=66.18 E-value=53 Score=37.35 Aligned_cols=84 Identities=13% Similarity=0.091 Sum_probs=46.3
Q ss_pred EEccccCeeEEEecC-------EEEEEEeeCCceeeeEEeecceeEEEEeeecCEEEE-eeccC----cEEEEEEeccCC
Q psy92 332 AICHVAGFLVTAVGQ-------KIYIWQLKDNDLTGIAFIDTEVYIASMVSVKNLILV-GDYAR----SIALLRYQPEYR 399 (638)
Q Consensus 332 al~~~~g~Ll~avg~-------~l~v~~l~~~~L~~~a~~d~~~~i~~i~~~~~~Ilv-gD~~~----Sv~ll~~~~~~~ 399 (638)
+++.++|+|++.-|. .+..|+...+++...+-+..+-+-.++.+.++.|+| |=... .=.+.+|++..+
T Consensus 337 ~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~ 416 (534)
T PHA03098 337 GVTVFNNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTN 416 (534)
T ss_pred eEEEECCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccceEEEECCEEEEECCcCCCCcccceEEEEeCCCC
Confidence 334456666555442 467788777776655543333334445566776654 33211 124567888777
Q ss_pred eEEEEeccCCCcceee
Q psy92 400 TLSLVARDYKPTQPNS 415 (638)
Q Consensus 400 ~l~~~arD~~~~~v~~ 415 (638)
+-..++.-+.++...+
T Consensus 417 ~W~~~~~~p~~r~~~~ 432 (534)
T PHA03098 417 KWSKGSPLPISHYGGC 432 (534)
T ss_pred eeeecCCCCccccCce
Confidence 7777665445554433
No 113
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=65.44 E-value=2e+02 Score=30.99 Aligned_cols=192 Identities=16% Similarity=0.296 Sum_probs=97.6
Q ss_pred CCceEEEecCCCCCccEEec-----------------ccCCCC-CCc-EEEEEc--CCeEEEEEeCCCCCCCCCceeEEE
Q psy92 116 RGELRAHPMTIDGPVSTLAP-----------------FHNVNC-PRG-FLYFNA--KSELRISVLPTHLSYDAPWPVRKV 174 (638)
Q Consensus 116 ~~~l~~~pl~~~~~v~~~a~-----------------F~~~~~-~~g-fl~~~~--~~~L~I~~l~~~~~~~~~~~~r~i 174 (638)
.|.+.+.|++.++.+..... -|..+. |++ +|++.+ .+.+.+..+++. ++. +...-.+
T Consensus 110 ~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg-~L~-~~~~~~v 187 (346)
T COG2706 110 SGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDG-KLT-PADPAEV 187 (346)
T ss_pred CceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccC-ccc-ccccccc
Confidence 37788888865544333311 111111 344 555443 355666666632 222 2333345
Q ss_pred eCCCcccEEEEecCCCEEEEEEeeecCCCcc--cccCCccccccCCCCCCCCCCCcccccEEEEEeCCCceeecceeecC
Q psy92 175 PLKCTPHFLAYHLETKTYCIVTSTAEPSTDY--YKFNGEDKELVTDPRDSRFIPPLVSQFHVSLFSPFSWEEIPQTNFPL 252 (638)
Q Consensus 175 pL~~tp~ri~y~~~~~~~~V~~s~~~~~~~~--~~~~~e~~e~~~~~~~~~~~~p~~~~~~i~lid~~t~~~i~~~~~~l 252 (638)
+=|.=||+|++||..+...+++ |..+.. ++.++. ..+-..++-++- ++. .|.=
T Consensus 188 ~~G~GPRHi~FHpn~k~aY~v~---EL~stV~v~~y~~~----------------~g~~~~lQ~i~t-----lP~-dF~g 242 (346)
T COG2706 188 KPGAGPRHIVFHPNGKYAYLVN---ELNSTVDVLEYNPA----------------VGKFEELQTIDT-----LPE-DFTG 242 (346)
T ss_pred CCCCCcceEEEcCCCcEEEEEe---ccCCEEEEEEEcCC----------------CceEEEeeeecc-----Ccc-ccCC
Confidence 7788899999999998776665 111100 011000 011123333331 111 1111
Q ss_pred CCceeEeEEEEEEeeccCccCCcccEEEEeecccCCCCcccceeEEEEEEEEeecCCCCccccCceEEEEEEeeCCc-eE
Q psy92 253 HEWEHVLCLKNVSMEYEGTLSGLRGYIALGTNYNYSEDVTCRGRILLFDIIEVVPEPGQPLTKNKIKMIYAKEQKGP-VT 331 (638)
Q Consensus 253 ~~~E~v~si~~v~l~~~~~~~~~~~~ivVGT~~~~~ed~~~~GrI~vf~i~~vvpe~g~~~t~~kLkl~~~~~~~G~-V~ 331 (638)
.. ....+.+... ..|+.+.- ++-| .|-+|.|.+. ..+|.++......|- +.
T Consensus 243 ~~-----~~aaIhis~d------GrFLYasN---Rg~d-----sI~~f~V~~~---------~g~L~~~~~~~teg~~PR 294 (346)
T COG2706 243 TN-----WAAAIHISPD------GRFLYASN---RGHD-----SIAVFSVDPD---------GGKLELVGITPTEGQFPR 294 (346)
T ss_pred CC-----ceeEEEECCC------CCEEEEec---CCCC-----eEEEEEEcCC---------CCEEEEEEEeccCCcCCc
Confidence 11 2223334332 36666653 3333 7888988752 357888888877775 55
Q ss_pred EEc-cccCeeEEEecC---EEEEEEeeCC--ceeeeE
Q psy92 332 AIC-HVAGFLVTAVGQ---KIYIWQLKDN--DLTGIA 362 (638)
Q Consensus 332 al~-~~~g~Ll~avg~---~l~v~~l~~~--~L~~~a 362 (638)
... .-.|++|+|.|| .|.+|+.+++ +|....
T Consensus 295 ~F~i~~~g~~Liaa~q~sd~i~vf~~d~~TG~L~~~~ 331 (346)
T COG2706 295 DFNINPSGRFLIAANQKSDNITVFERDKETGRLTLLG 331 (346)
T ss_pred cceeCCCCCEEEEEccCCCcEEEEEEcCCCceEEecc
Confidence 543 224555566555 6899998844 455433
No 114
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=65.38 E-value=1.5e+02 Score=29.59 Aligned_cols=45 Identities=22% Similarity=0.325 Sum_probs=28.3
Q ss_pred EEEEE--cCCeEEEEEeCCCCCCCCCceeEEEeCCCcccEEEEecCCCEEEEE
Q psy92 145 FLYFN--AKSELRISVLPTHLSYDAPWPVRKVPLKCTPHFLAYHLETKTYCIV 195 (638)
Q Consensus 145 fl~~~--~~~~L~I~~l~~~~~~~~~~~~r~ipL~~tp~ri~y~~~~~~~~V~ 195 (638)
.++++ .++.+++..+... -..+.++.+..|+.++++|..+.+++.
T Consensus 44 ~l~~~~~~~~~v~~~d~~~~------~~~~~~~~~~~~~~~~~~~~g~~l~~~ 90 (300)
T TIGR03866 44 LLYVCASDSDTIQVIDLATG------EVIGTLPSGPDPELFALHPNGKILYIA 90 (300)
T ss_pred EEEEEECCCCeEEEEECCCC------cEEEeccCCCCccEEEECCCCCEEEEE
Confidence 45443 3466777665542 234566777778889999888766544
No 115
>KOG0296|consensus
Probab=65.33 E-value=1.5e+02 Score=32.14 Aligned_cols=95 Identities=12% Similarity=0.133 Sum_probs=59.7
Q ss_pred EEEEeeCCceEEEc-cccCeeEEE--ecCEEEEEEeeCCceeeeEEeecceeEEEEe--eecCEEEEeeccCcEEEEEEe
Q psy92 321 IYAKEQKGPVTAIC-HVAGFLVTA--VGQKIYIWQLKDNDLTGIAFIDTEVYIASMV--SVKNLILVGDYARSIALLRYQ 395 (638)
Q Consensus 321 ~~~~~~~G~V~al~-~~~g~Ll~a--vg~~l~v~~l~~~~L~~~a~~d~~~~i~~i~--~~~~~IlvgD~~~Sv~ll~~~ 395 (638)
.-.+..|..|+++. .+.|-|||. +-.+|+||+...+......+..+. -+.=+. -.+..+++|+---|+|+++..
T Consensus 100 ~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~~e~~-dieWl~WHp~a~illAG~~DGsvWmw~ip 178 (399)
T KOG0296|consen 100 GELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQEVE-DIEWLKWHPRAHILLAGSTDGSVWMWQIP 178 (399)
T ss_pred eEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEEeecccC-ceEEEEecccccEEEeecCCCcEEEEECC
Confidence 33456789999986 566666665 556999999987765443321111 111112 235788899999999998875
Q ss_pred ccCCeEEEEeccCCCcceeeeecc
Q psy92 396 PEYRTLSLVARDYKPTQPNSKGYY 419 (638)
Q Consensus 396 ~~~~~l~~~arD~~~~~v~~~~~l 419 (638)
.+ .....++- ....+++-+|+
T Consensus 179 ~~-~~~kv~~G--h~~~ct~G~f~ 199 (399)
T KOG0296|consen 179 SQ-ALCKVMSG--HNSPCTCGEFI 199 (399)
T ss_pred Cc-ceeeEecC--CCCCccccccc
Confidence 43 23333333 44558888898
No 116
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=65.31 E-value=2.3e+02 Score=31.58 Aligned_cols=77 Identities=16% Similarity=0.208 Sum_probs=55.4
Q ss_pred CCCcceeeeEEEeeecCCceeEEecCCCCeEEEEecCCceEEEecCCCCCccEEecccCC--CCCC---cEEEEEcCCeE
Q psy92 80 LPRGVRISQMRYFSNIAGYQGVFLCGPHPAWLFLTSRGELRAHPMTIDGPVSTLAPFHNV--NCPR---GFLYFNAKSEL 154 (638)
Q Consensus 80 ~~~~~~~~~l~~f~~~~g~~~Vf~~g~~P~~i~~~~~~~l~~~pl~~~~~v~~~a~F~~~--~~~~---gfl~~~~~~~L 154 (638)
...|.+...+.....-+..+.|+|.|+|..+.+.. .|.+++..- .+-...++++|... +-++ .++..+..+.|
T Consensus 235 ~nlGE~~l~i~v~~~~~~~~~IvvLger~Lf~l~~-~G~l~~~kr-Ld~~p~~~~~Y~~~~~~~~~~~~~llV~t~t~~L 312 (418)
T PF14727_consen 235 FNLGEQALDIQVVRFSSSESDIVVLGERSLFCLKD-NGSLRFQKR-LDYNPSCFCPYRVPWYNEPSTRLNLLVGTHTGTL 312 (418)
T ss_pred EECCceeEEEEEEEcCCCCceEEEEecceEEEEcC-CCeEEEEEe-cCCceeeEEEEEeecccCCCCceEEEEEecCCeE
Confidence 34566666777776545678899999999777766 588888765 56678899999773 3332 25666678888
Q ss_pred EEEE
Q psy92 155 RISV 158 (638)
Q Consensus 155 ~I~~ 158 (638)
.|.+
T Consensus 313 lVy~ 316 (418)
T PF14727_consen 313 LVYE 316 (418)
T ss_pred EEEe
Confidence 8876
No 117
>KOG3621|consensus
Probab=65.30 E-value=20 Score=41.60 Aligned_cols=147 Identities=18% Similarity=0.268 Sum_probs=90.4
Q ss_pred cEEEEEeCCCceeecceeecCCCceeEeEEEEEEeeccCccCCcccEEEEeecccCCCCcccceeEEEEEEEEeecCCCC
Q psy92 232 FHVSLFSPFSWEEIPQTNFPLHEWEHVLCLKNVSMEYEGTLSGLRGYIALGTNYNYSEDVTCRGRILLFDIIEVVPEPGQ 311 (638)
Q Consensus 232 ~~i~lid~~t~~~i~~~~~~l~~~E~v~si~~v~l~~~~~~~~~~~~ivVGT~~~~~ed~~~~GrI~vf~i~~vvpe~g~ 311 (638)
+.+-+++-.+.+.. .+..+-.+.++|++.++- ...++|.|| .+||+-||.+.+ ++
T Consensus 55 G~lyl~~R~~~~~~---~~~~~~~~~~~~~~~vs~--------~e~lvAagt---------~~g~V~v~ql~~-----~~ 109 (726)
T KOG3621|consen 55 GSVYLYNRHTGEMR---KLKNEGATGITCVRSVSS--------VEYLVAAGT---------ASGRVSVFQLNK-----EL 109 (726)
T ss_pred ceEEEEecCchhhh---cccccCccceEEEEEecc--------hhHhhhhhc---------CCceEEeehhhc-----cC
Confidence 45666665543321 122222445556555533 357888888 899999999876 33
Q ss_pred ccccCceEEEEEEee--CCceEEEccccC--eeEEEe-cCEEEEEEeeCCce--eee-EEeecceeEEEEeeecCEEEEe
Q psy92 312 PLTKNKIKMIYAKEQ--KGPVTAICHVAG--FLVTAV-GQKIYIWQLKDNDL--TGI-AFIDTEVYIASMVSVKNLILVG 383 (638)
Q Consensus 312 ~~t~~kLkl~~~~~~--~G~V~al~~~~g--~Ll~av-g~~l~v~~l~~~~L--~~~-a~~d~~~~i~~i~~~~~~Ilvg 383 (638)
| ..+.++...+. +--||||+--.+ ++..|= -.+|..-.|....+ -+. -.+...+.|++|.....+++|+
T Consensus 110 p---~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~q~~LLVS 186 (726)
T KOG3621|consen 110 P---RDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYLQSYLLVS 186 (726)
T ss_pred C---CcceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeecccceehHh
Confidence 3 24555555555 789999985543 466662 23666666664221 111 1134567899999999999999
Q ss_pred eccCcEEEEEEeccCCeEEEEeccCC
Q psy92 384 DYARSIALLRYQPEYRTLSLVARDYK 409 (638)
Q Consensus 384 D~~~Sv~ll~~~~~~~~l~~~arD~~ 409 (638)
.+.+++-+- .|..++..+++-..
T Consensus 187 tl~r~~Lc~---tE~eti~QIG~k~R 209 (726)
T KOG3621|consen 187 TLTRCILCQ---TEAETITQIGKKPR 209 (726)
T ss_pred hhhhhheee---cchhHHHHhcCCCc
Confidence 999998653 34455666665433
No 118
>KOG1896|consensus
Probab=65.08 E-value=49 Score=40.92 Aligned_cols=92 Identities=18% Similarity=0.254 Sum_probs=69.9
Q ss_pred eEEEEEEEEeecCCCCccccCceEEEEEEeeCCceEEEccccCeeEEE-ecCEEEEEEeeCC--c--eeeeEEeecceeE
Q psy92 296 RILLFDIIEVVPEPGQPLTKNKIKMIYAKEQKGPVTAICHVAGFLVTA-VGQKIYIWQLKDN--D--LTGIAFIDTEVYI 370 (638)
Q Consensus 296 rI~vf~i~~vvpe~g~~~t~~kLkl~~~~~~~G~V~al~~~~g~Ll~a-vg~~l~v~~l~~~--~--L~~~a~~d~~~~i 370 (638)
.|+++++.+ +..|.=+.=.+..--|+++..++.+|++| +=+.|....|+.+ + |....|-..++|.
T Consensus 1117 KI~v~~l~r----------~~~ligVaFiD~~~yv~s~~~vknlIl~gDV~ksisfl~fqeep~rlsL~srd~~~l~v~s 1186 (1366)
T KOG1896|consen 1117 KIIVRKLDR----------DSELIGVAFIDLPLYVHSMKVVKNLILAGDVMKSISFLGFQEEPYRLSLLSRDFEPLNVYS 1186 (1366)
T ss_pred EEEEEEecc----------CCcceeeEEeccceeEEehhhhhhheehhhhhhceEEEEEccCceEEEEeecCCchhhcee
Confidence 788888854 23455455566667788888999999998 8888998888854 3 4455555667777
Q ss_pred EEEeeecC--EEEEeeccCcEEEEEEecc
Q psy92 371 ASMVSVKN--LILVGDYARSIALLRYQPE 397 (638)
Q Consensus 371 ~~i~~~~~--~IlvgD~~~Sv~ll~~~~~ 397 (638)
+..-+.|+ ..+|.|+-+.+.++.|.++
T Consensus 1187 ~EFLVdg~~L~flvsDa~rNi~vy~Y~Pe 1215 (1366)
T KOG1896|consen 1187 TEFLVDGSNLSFLVSDADRNIHVYMYAPE 1215 (1366)
T ss_pred eeeEEcCCeeEEEEEcCCCcEEEEEeCCC
Confidence 77777775 6789999999999999986
No 119
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=64.03 E-value=1.5e+02 Score=29.01 Aligned_cols=134 Identities=14% Similarity=0.174 Sum_probs=74.7
Q ss_pred cEEEEEeCCCceeecceeecCCC-ceeEeEEEEEEeeccCccCCcccEEEEeecccCCCCcccceeEEEEEEEEeecCCC
Q psy92 232 FHVSLFSPFSWEEIPQTNFPLHE-WEHVLCLKNVSMEYEGTLSGLRGYIALGTNYNYSEDVTCRGRILLFDIIEVVPEPG 310 (638)
Q Consensus 232 ~~i~lid~~t~~~i~~~~~~l~~-~E~v~si~~v~l~~~~~~~~~~~~ivVGT~~~~~ed~~~~GrI~vf~i~~vvpe~g 310 (638)
+.|..+|+.+.+.+. ++.+.+ .....+. .+. ...++++++ ..|.|+.|++.
T Consensus 3 g~l~~~d~~tG~~~W--~~~~~~~~~~~~~~---~~~-------~~~~v~~~~---------~~~~l~~~d~~------- 54 (238)
T PF13360_consen 3 GTLSALDPRTGKELW--SYDLGPGIGGPVAT---AVP-------DGGRVYVAS---------GDGNLYALDAK------- 54 (238)
T ss_dssp SEEEEEETTTTEEEE--EEECSSSCSSEEET---EEE-------ETTEEEEEE---------TTSEEEEEETT-------
T ss_pred CEEEEEECCCCCEEE--EEECCCCCCCccce---EEE-------eCCEEEEEc---------CCCEEEEEECC-------
Confidence 568889998888888 566643 1111110 111 245677775 67888888753
Q ss_pred CccccCceEEEEEEeeCCceEE-EccccCeeEEEe-cCEEEEEEeeCCceeeeE-Eee---cc-eeEEEEeeecCEEEEe
Q psy92 311 QPLTKNKIKMIYAKEQKGPVTA-ICHVAGFLVTAV-GQKIYIWQLKDNDLTGIA-FID---TE-VYIASMVSVKNLILVG 383 (638)
Q Consensus 311 ~~~t~~kLkl~~~~~~~G~V~a-l~~~~g~Ll~av-g~~l~v~~l~~~~L~~~a-~~d---~~-~~i~~i~~~~~~Ilvg 383 (638)
.-+++.+.+..+++.. ....++.++++. +..|+.++..+.++.-.. ... .. .......+.+++++++
T Consensus 55 ------tG~~~W~~~~~~~~~~~~~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (238)
T PF13360_consen 55 ------TGKVLWRFDLPGPISGAPVVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVG 128 (238)
T ss_dssp ------TSEEEEEEECSSCGGSGEEEETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEE
T ss_pred ------CCCEEEEeeccccccceeeecccccccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEE
Confidence 2345666665544333 245567777775 456777776666654331 111 11 1222344458888888
Q ss_pred eccCcEEEEEEeccCCeE
Q psy92 384 DYARSIALLRYQPEYRTL 401 (638)
Q Consensus 384 D~~~Sv~ll~~~~~~~~l 401 (638)
+.-. .++.++.+..++
T Consensus 129 ~~~g--~l~~~d~~tG~~ 144 (238)
T PF13360_consen 129 TSSG--KLVALDPKTGKL 144 (238)
T ss_dssp ETCS--EEEEEETTTTEE
T ss_pred eccC--cEEEEecCCCcE
Confidence 8733 345556555554
No 120
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=63.40 E-value=2e+02 Score=30.27 Aligned_cols=82 Identities=23% Similarity=0.361 Sum_probs=59.0
Q ss_pred CceeEEecCCCCeEEEEecCCceEEEecCCCCCccEEecccCCCCCCcEEEEEcCCeEEEEEeCCCCCCCCCceeEEEeC
Q psy92 97 GYQGVFLCGPHPAWLFLTSRGELRAHPMTIDGPVSTLAPFHNVNCPRGFLYFNAKSELRISVLPTHLSYDAPWPVRKVPL 176 (638)
Q Consensus 97 g~~~Vf~~g~~P~~i~~~~~~~l~~~pl~~~~~v~~~a~F~~~~~~~gfl~~~~~~~L~I~~l~~~~~~~~~~~~r~ipL 176 (638)
|.....+.|+.| ..+++..+.|+. ...+||.-.--++|-+.++.+++=.|++|++.. =-+.++||
T Consensus 36 G~~a~~A~gs~p-----a~~~s~~~fpvp-----~G~ap~dvapapdG~VWft~qg~gaiGhLdP~t-----Gev~~ypL 100 (353)
T COG4257 36 GEFATPAAGSSP-----APDGSSAEFPVP-----NGSAPFDVAPAPDGAVWFTAQGTGAIGHLDPAT-----GEVETYPL 100 (353)
T ss_pred ccccchhhcCCC-----CCCCccceeccC-----CCCCccccccCCCCceEEecCccccceecCCCC-----CceEEEec
Confidence 334455566666 235777788873 345688777778998888888888999999843 45778888
Q ss_pred CC--cccEEEEecCCCEEE
Q psy92 177 KC--TPHFLAYHLETKTYC 193 (638)
Q Consensus 177 ~~--tp~ri~y~~~~~~~~ 193 (638)
+. .||.|+--|+....+
T Consensus 101 g~Ga~Phgiv~gpdg~~Wi 119 (353)
T COG4257 101 GSGASPHGIVVGPDGSAWI 119 (353)
T ss_pred CCCCCCceEEECCCCCeeE
Confidence 75 688888777766654
No 121
>KOG0294|consensus
Probab=61.91 E-value=2.2e+02 Score=30.32 Aligned_cols=52 Identities=25% Similarity=0.473 Sum_probs=40.0
Q ss_pred cceeEEEEEEEEeecCCCCccccCceEEEEEE-eeCCceEEEc-cccCeeEEEecC--EEEEEEeeCCc
Q psy92 293 CRGRILLFDIIEVVPEPGQPLTKNKIKMIYAK-EQKGPVTAIC-HVAGFLVTAVGQ--KIYIWQLKDND 357 (638)
Q Consensus 293 ~~GrI~vf~i~~vvpe~g~~~t~~kLkl~~~~-~~~G~V~al~-~~~g~Ll~avg~--~l~v~~l~~~~ 357 (638)
..|.|.+|++. +.++++.- ..+|.|+-|. +-.|+|..++|. .+++|+|-..+
T Consensus 105 dDG~i~iw~~~-------------~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr 160 (362)
T KOG0294|consen 105 DDGHIIIWRVG-------------SWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGR 160 (362)
T ss_pred CCCcEEEEEcC-------------CeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCc
Confidence 68999999874 35666644 4588899994 678999999886 78889887543
No 122
>KOG0279|consensus
Probab=61.72 E-value=2.1e+02 Score=29.99 Aligned_cols=110 Identities=15% Similarity=0.291 Sum_probs=68.3
Q ss_pred ceeEeEEEEEEeeccCccCCcccEEEEeecccCCCCcccceeEEEEEEEEeecCCCCccccCceEEEEEEeeCCceEEEc
Q psy92 255 WEHVLCLKNVSMEYEGTLSGLRGYIALGTNYNYSEDVTCRGRILLFDIIEVVPEPGQPLTKNKIKMIYAKEQKGPVTAIC 334 (638)
Q Consensus 255 ~E~v~si~~v~l~~~~~~~~~~~~ivVGT~~~~~ed~~~~GrI~vf~i~~vvpe~g~~~t~~kLkl~~~~~~~G~V~al~ 334 (638)
.|-|.|++ |... ..+.++|.++ -.+-+.+|+... .+++.-|- -..|.|++++
T Consensus 148 ~~WVscvr---fsP~-----~~~p~Ivs~s--------~DktvKvWnl~~-----------~~l~~~~~-gh~~~v~t~~ 199 (315)
T KOG0279|consen 148 REWVSCVR---FSPN-----ESNPIIVSAS--------WDKTVKVWNLRN-----------CQLRTTFI-GHSGYVNTVT 199 (315)
T ss_pred cCcEEEEE---EcCC-----CCCcEEEEcc--------CCceEEEEccCC-----------cchhhccc-cccccEEEEE
Confidence 46677765 4321 1355556653 345778888752 34443332 2457888876
Q ss_pred -cccCeeEEEecC--EEEEEEeeCCceeeeEEeecceeEEEEeeecC-EEEEeeccCcEEEEEE
Q psy92 335 -HVAGFLVTAVGQ--KIYIWQLKDNDLTGIAFIDTEVYIASMVSVKN-LILVGDYARSIALLRY 394 (638)
Q Consensus 335 -~~~g~Ll~avg~--~l~v~~l~~~~L~~~a~~d~~~~i~~i~~~~~-~IlvgD~~~Sv~ll~~ 394 (638)
+-.|.|.+.-|. ++++|++.+++= .-.++....|.++.+..| +.++.=.-.||-+...
T Consensus 200 vSpDGslcasGgkdg~~~LwdL~~~k~--lysl~a~~~v~sl~fspnrywL~~at~~sIkIwdl 261 (315)
T KOG0279|consen 200 VSPDGSLCASGGKDGEAMLWDLNEGKN--LYSLEAFDIVNSLCFSPNRYWLCAATATSIKIWDL 261 (315)
T ss_pred ECCCCCEEecCCCCceEEEEEccCCce--eEeccCCCeEeeEEecCCceeEeeccCCceEEEec
Confidence 567788777554 789999986542 234566777888887765 5566666677766554
No 123
>KOG2079|consensus
Probab=61.31 E-value=17 Score=44.18 Aligned_cols=100 Identities=20% Similarity=0.310 Sum_probs=66.4
Q ss_pred ccEEEEeecccCCCCcccceeEEEEEEEEeecCCCCccccCceEEEE-EEeeCCceEEEcc-ccCeeEEE-e-cCEEEEE
Q psy92 276 RGYIALGTNYNYSEDVTCRGRILLFDIIEVVPEPGQPLTKNKIKMIY-AKEQKGPVTAICH-VAGFLVTA-V-GQKIYIW 351 (638)
Q Consensus 276 ~~~ivVGT~~~~~ed~~~~GrI~vf~i~~vvpe~g~~~t~~kLkl~~-~~~~~G~V~al~~-~~g~Ll~a-v-g~~l~v~ 351 (638)
...||+|| +.|.++.++..- .|+..| -+.+.|||++++- -+|+++++ - +.-|.+|
T Consensus 99 ~~~ivi~T---------s~ghvl~~d~~~------------nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~ 157 (1206)
T KOG2079|consen 99 VVPIVIGT---------SHGHVLLSDMTG------------NLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVW 157 (1206)
T ss_pred eeeEEEEc---------Cchhhhhhhhhc------------ccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEE
Confidence 47899999 899999998753 355444 4557999999984 45665554 3 3358899
Q ss_pred EeeCCceeeeEEe-ecc--eeEEEEeee-cCEEEEeeccCcEEEEEEec
Q psy92 352 QLKDNDLTGIAFI-DTE--VYIASMVSV-KNLILVGDYARSIALLRYQP 396 (638)
Q Consensus 352 ~l~~~~L~~~a~~-d~~--~~i~~i~~~-~~~IlvgD~~~Sv~ll~~~~ 396 (638)
+...+++.+.-+. -.+ ..++...+- +..++.+|..-|+|=+-|..
T Consensus 158 D~~~~k~l~~i~e~~ap~t~vi~v~~t~~nS~llt~D~~Gsf~~lv~nk 206 (1206)
T KOG2079|consen 158 DMHRAKILKVITEHGAPVTGVIFVGRTSQNSKLLTSDTGGSFWKLVFNK 206 (1206)
T ss_pred EccCCcceeeeeecCCccceEEEEEEeCCCcEEEEccCCCceEEEEech
Confidence 9997665443332 221 222333333 35689999999988887764
No 124
>KOG0319|consensus
Probab=60.66 E-value=3.4e+02 Score=32.06 Aligned_cols=374 Identities=11% Similarity=0.116 Sum_probs=173.8
Q ss_pred eEEecCCCCeEEEEec--CCceEEEecCCCCCccEEecccCCCCCCcEEEEEcCCeEEEEEeCCCCCCCCCceeEEEeCC
Q psy92 100 GVFLCGPHPAWLFLTS--RGELRAHPMTIDGPVSTLAPFHNVNCPRGFLYFNAKSELRISVLPTHLSYDAPWPVRKVPLK 177 (638)
Q Consensus 100 ~Vf~~g~~P~~i~~~~--~~~l~~~pl~~~~~v~~~a~F~~~~~~~gfl~~~~~~~L~I~~l~~~~~~~~~~~~r~ipL~ 177 (638)
.++..|.-...+.+.. -..++..|+. +.+.++.-.+...-..|-..++.++.=.++.++..- ..-.-.++.|-.
T Consensus 206 ~~ls~~RDkvi~vwd~~~~~~l~~lp~y--e~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es--~~~~~~~~~~~~ 281 (775)
T KOG0319|consen 206 ELLSVGRDKVIIVWDLVQYKKLKTLPLY--ESLESVVRLREELGGKGEYIITAGGSGVVQYWDSES--GKCVYKQRQSDS 281 (775)
T ss_pred eEEEeccCcEEEEeehhhhhhhheechh--hheeeEEEechhcCCcceEEEEecCCceEEEEeccc--chhhhhhccCCc
Confidence 3444554444554542 2566667763 457777766553222232333445544555555421 111222333324
Q ss_pred CcccEEEEecCCCEEEEEEeeecCCC----cc---cccCCccccccC---CCCCCCCCCCcccccEEEEEeCCCceeecc
Q psy92 178 CTPHFLAYHLETKTYCIVTSTAEPST----DY---YKFNGEDKELVT---DPRDSRFIPPLVSQFHVSLFSPFSWEEIPQ 247 (638)
Q Consensus 178 ~tp~ri~y~~~~~~~~V~~s~~~~~~----~~---~~~~~e~~e~~~---~~~~~~~~~p~~~~~~i~lid~~t~~~i~~ 247 (638)
+...++++.+..+.+++++.+++.+- .. .++-+..+|.-+ .-+++++..--....++++++-.+...
T Consensus 282 ~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c--- 358 (775)
T KOG0319|consen 282 EEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYC--- 358 (775)
T ss_pred hhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCce---
Confidence 44788889898888888888766431 00 011121111110 001111111112336788886443321
Q ss_pred eeecCCCceeEeEEEEEEeeccCccCCcccEEEEeecccCCCCcccceeEEEEEEEEeecCCCCccccCceEEEE--EEe
Q psy92 248 TNFPLHEWEHVLCLKNVSMEYEGTLSGLRGYIALGTNYNYSEDVTCRGRILLFDIIEVVPEPGQPLTKNKIKMIY--AKE 325 (638)
Q Consensus 248 ~~~~l~~~E~v~si~~v~l~~~~~~~~~~~~ivVGT~~~~~ed~~~~GrI~vf~i~~vvpe~g~~~t~~kLkl~~--~~~ 325 (638)
.+--...|.|+|+..+ . ...+|+=|. ..-.+++|++.+ + .....+. -.-
T Consensus 359 -~ii~GH~e~vlSL~~~--~-------~g~llat~s---------KD~svilWr~~~-----~-----~~~~~~~a~~~g 409 (775)
T KOG0319|consen 359 -QIIPGHTEAVLSLDVW--S-------SGDLLATGS---------KDKSVILWRLNN-----N-----CSKSLCVAQANG 409 (775)
T ss_pred -EEEeCchhheeeeeec--c-------cCcEEEEec---------CCceEEEEEecC-----C-----cchhhhhhhhcc
Confidence 2222335777776521 1 123454443 344678888843 1 1112222 223
Q ss_pred eCCceEEEccccC--eeEEEec--CEEEEEEeeCC--ceeeeEE--------eecceeEEEEeeecCEEEEeeccCcEEE
Q psy92 326 QKGPVTAICHVAG--FLVTAVG--QKIYIWQLKDN--DLTGIAF--------IDTEVYIASMVSVKNLILVGDYARSIAL 391 (638)
Q Consensus 326 ~~G~V~al~~~~g--~Ll~avg--~~l~v~~l~~~--~L~~~a~--------~d~~~~i~~i~~~~~~IlvgD~~~Sv~l 391 (638)
..+.|+|++.-.+ -+++.++ .++.+|.+.+. +=-+..+ +|-.+-.+.+...+.+|.-|-.-|-..+
T Consensus 410 H~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKi 489 (775)
T KOG0319|consen 410 HTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKI 489 (775)
T ss_pred cccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceee
Confidence 4678888875443 2444444 47889999851 1111111 1212222233333456666666666666
Q ss_pred EEEeccCCeE-EEEeccCCCcceeeeecccCCCCCcccccc----------cceeeeeecccccccc----ccccCCccc
Q psy92 392 LRYQPEYRTL-SLVARDYKPTQPNSKGYYAGNPSRGIIDGS----------LVWKFLQLSLGERLEI----CKKIGSKHN 456 (638)
Q Consensus 392 l~~~~~~~~l-~~~arD~~~~~v~~~~~l~~~~~~~~vd~~----------~~~~~~~~~~gd~~~~----~~r~~~~~~ 456 (638)
..+. ..++ -.++-. .|.+.++.|= . .|.- =-|+-++-.|=-.|++ ++|..=--
T Consensus 490 W~le--~~~l~~vLsGH--~RGvw~V~Fs-~------~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~- 557 (775)
T KOG0319|consen 490 WDLE--QLRLLGVLSGH--TRGVWCVSFS-K------NDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIR- 557 (775)
T ss_pred eccc--CceEEEEeeCC--ccceEEEEec-c------ccceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeee-
Confidence 5543 2222 222322 2333344441 1 1100 0245555444444443 44433111
Q ss_pred ccccCCCceeEEEEeCCCcEEEEEeCCCCcCCCCCceEEEEeeeecCcceeeEEEEeccCCCCCCCCCCCCceEEEEEeC
Q psy92 457 DILDEFSSMGFMISDKDKNVVLFMYQPEARESNGGHRLIKKTDFHLGQHVNTFFKIRCKPSSISDAPGARSRFLTWYASL 536 (638)
Q Consensus 457 ~~~~~~~~l~~l~aD~~~nl~v~~~~~~~~~s~~~~~L~~~~~f~lg~~v~~~~~~~~~~~~~~~~~~~~~~~~il~~t~ 536 (638)
+++ .++.++++|-+-++..... .|...+-.+-.+..-.... .....++.|+.
T Consensus 558 ----~~~--qliS~~adGliKlWnikt~------------eC~~tlD~H~DrvWaL~~~----------~~~~~~~tgg~ 609 (775)
T KOG0319|consen 558 ----NGK--QLISAGADGLIKLWNIKTN------------ECEMTLDAHNDRVWALSVS----------PLLDMFVTGGG 609 (775)
T ss_pred ----CCc--EEEeccCCCcEEEEeccch------------hhhhhhhhccceeEEEeec----------CccceeEecCC
Confidence 133 3677777887777665431 1222232233333333221 11224667789
Q ss_pred CCcEEEEEeCChh
Q psy92 537 DGALGFFLPLPEK 549 (638)
Q Consensus 537 ~GsIg~l~pl~~~ 549 (638)
||.|-.+--.+++
T Consensus 610 Dg~i~~wkD~Te~ 622 (775)
T KOG0319|consen 610 DGRIIFWKDVTEE 622 (775)
T ss_pred CeEEEEeecCcHH
Confidence 9999999988764
No 125
>KOG4441|consensus
Probab=60.38 E-value=1.7e+02 Score=33.96 Aligned_cols=92 Identities=16% Similarity=0.094 Sum_probs=62.0
Q ss_pred eeCCceEEEccccCeeEEEecCEEEEEEeeCCceeeeEEeecceeEEEEeeecCEEEE-ee-ccCc---EEEEEEeccCC
Q psy92 325 EQKGPVTAICHVAGFLVTAVGQKIYIWQLKDNDLTGIAFIDTEVYIASMVSVKNLILV-GD-YARS---IALLRYQPEYR 399 (638)
Q Consensus 325 ~~~G~V~al~~~~g~Ll~avg~~l~v~~l~~~~L~~~a~~d~~~~i~~i~~~~~~Ilv-gD-~~~S---v~ll~~~~~~~ 399 (638)
...|.+|++.+++|.= .-+++..|+...+++..+|-+..+-+-..+.+.+++|++ |= -..+ =++..|++..+
T Consensus 378 ~l~g~iYavGG~dg~~---~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~ 454 (571)
T KOG4441|consen 378 VLDGKLYAVGGFDGEK---SLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETN 454 (571)
T ss_pred EECCEEEEEecccccc---ccccEEEecCCCCcccccCCCCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCC
Confidence 4456666666555321 112578899988888888876666777777788876654 22 1111 34667999999
Q ss_pred eEEEEeccCCCcceeeeecc
Q psy92 400 TLSLVARDYKPTQPNSKGYY 419 (638)
Q Consensus 400 ~l~~~arD~~~~~v~~~~~l 419 (638)
+=..++.=..+|....+..+
T Consensus 455 ~W~~~~~M~~~R~~~g~a~~ 474 (571)
T KOG4441|consen 455 TWTLIAPMNTRRSGFGVAVL 474 (571)
T ss_pred ceeecCCcccccccceEEEE
Confidence 99988888888877776665
No 126
>KOG0268|consensus
Probab=59.54 E-value=62 Score=34.93 Aligned_cols=17 Identities=18% Similarity=0.483 Sum_probs=14.2
Q ss_pred eEEEEeCCCcEEEEEeC
Q psy92 466 GFMISDKDKNVVLFMYQ 482 (638)
Q Consensus 466 ~~l~aD~~~nl~v~~~~ 482 (638)
.|.+++.+.||++|...
T Consensus 243 nF~~a~ED~nlY~~DmR 259 (433)
T KOG0268|consen 243 NFVAANEDHNLYTYDMR 259 (433)
T ss_pred ceeeccccccceehhhh
Confidence 48999999999988654
No 127
>KOG1188|consensus
Probab=58.85 E-value=2e+02 Score=30.93 Aligned_cols=144 Identities=17% Similarity=0.274 Sum_probs=78.5
Q ss_pred cccEEEEeecccCCCCcccceeEEEEEEEEeecCCCCccccCceEEEEEEeeCCceEEEcc--------ccCeeEEEecC
Q psy92 275 LRGYIALGTNYNYSEDVTCRGRILLFDIIEVVPEPGQPLTKNKIKMIYAKEQKGPVTAICH--------VAGFLVTAVGQ 346 (638)
Q Consensus 275 ~~~~ivVGT~~~~~ed~~~~GrI~vf~i~~vvpe~g~~~t~~kLkl~~~~~~~G~V~al~~--------~~g~Ll~avg~ 346 (638)
....+|||- +.|.|.+|+-.. + .+|+ +++|+...+.. ..+-+.++.-.
T Consensus 39 ~e~~vav~l---------Sngsv~lyd~~t-----g-----~~l~-----~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG 94 (376)
T KOG1188|consen 39 FETAVAVSL---------SNGSVRLYDKGT-----G-----QLLE-----EFKGPPATTNGVRFISCDSPHGVISCSSDG 94 (376)
T ss_pred cceeEEEEe---------cCCeEEEEeccc-----h-----hhhh-----eecCCCCcccceEEecCCCCCeeEEeccCC
Confidence 457788887 788999998543 1 1222 33444433322 22334444556
Q ss_pred EEEEEEeeCC-ceeeeEEeecc-eeEEEEe--eecCEEEEeec----cCcEEEEEEeccCCeEEEEeccCCCcceeeeec
Q psy92 347 KIYIWQLKDN-DLTGIAFIDTE-VYIASMV--SVKNLILVGDY----ARSIALLRYQPEYRTLSLVARDYKPTQPNSKGY 418 (638)
Q Consensus 347 ~l~v~~l~~~-~L~~~a~~d~~-~~i~~i~--~~~~~IlvgD~----~~Sv~ll~~~~~~~~l~~~arD~~~~~v~~~~~ 418 (638)
.|++|+++.. +--+..+-.-+ ..-.++. ..++.|.+|.- +-+|.|+-++.+ .++.-.--|...-.||++.|
T Consensus 95 ~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~-qq~l~~~~eSH~DDVT~lrF 173 (376)
T KOG1188|consen 95 TVRLWDIRSQAESARISWTQQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSE-QQLLRQLNESHNDDVTQLRF 173 (376)
T ss_pred eEEEEEeecchhhhheeccCCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccc-cchhhhhhhhccCcceeEEe
Confidence 8999999832 22222221111 2223333 35778888854 334444444433 23222223444456888888
Q ss_pred ccCCCCCcccccccceeeeeeccccccccccccCCcccccccCCCceeEEEEeCCCcEEEEEeCCC
Q psy92 419 YAGNPSRGIIDGSLVWKFLQLSLGERLEICKKIGSKHNDILDEFSSMGFMISDKDKNVVLFMYQPE 484 (638)
Q Consensus 419 l~~~~~~~~vd~~~~~~~~~~~~gd~~~~~~r~~~~~~~~~~~~~~l~~l~aD~~~nl~v~~~~~~ 484 (638)
- .. +++| ++.+-.+|-+-+|....+
T Consensus 174 H--------P~--------------------------------~pnl-LlSGSvDGLvnlfD~~~d 198 (376)
T KOG1188|consen 174 H--------PS--------------------------------DPNL-LLSGSVDGLVNLFDTKKD 198 (376)
T ss_pred c--------CC--------------------------------CCCe-EEeecccceEEeeecCCC
Confidence 6 44 5655 677777888888876543
No 128
>KOG1408|consensus
Probab=57.17 E-value=3.1e+02 Score=32.50 Aligned_cols=215 Identities=15% Similarity=0.070 Sum_probs=104.7
Q ss_pred cceeEEEEEEEEeecCCCCccccCceEEEEEEe-eCCceEEEcc----ccCeeEEEecC--EEEEEEeeCCceeeeEEee
Q psy92 293 CRGRILLFDIIEVVPEPGQPLTKNKIKMIYAKE-QKGPVTAICH----VAGFLVTAVGQ--KIYIWQLKDNDLTGIAFID 365 (638)
Q Consensus 293 ~~GrI~vf~i~~vvpe~g~~~t~~kLkl~~~~~-~~G~V~al~~----~~g~Ll~avg~--~l~v~~l~~~~L~~~a~~d 365 (638)
+.|.|.||++.+ |++....| ...-|.||.- ...+|||..+. -|+||+.+.+= ..+..+|
T Consensus 479 r~GnlrVy~Lq~-------------l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny-~l~qtld 544 (1080)
T KOG1408|consen 479 RGGNLRVYDLQE-------------LEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNY-DLVQTLD 544 (1080)
T ss_pred ccCceEEEEehh-------------hhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEeccccc-chhhhhc
Confidence 678899998864 33333223 3556666652 23477777654 57888887442 2233444
Q ss_pred c-ceeEEEEeeecC----EEEEeeccCcEEEEEEeccCCeEEEEeccCCC-cceeeeecccCCCCCcccccccceeeeee
Q psy92 366 T-EVYIASMVSVKN----LILVGDYARSIALLRYQPEYRTLSLVARDYKP-TQPNSKGYYAGNPSRGIIDGSLVWKFLQL 439 (638)
Q Consensus 366 ~-~~~i~~i~~~~~----~IlvgD~~~Sv~ll~~~~~~~~l~~~arD~~~-~~v~~~~~l~~~~~~~~vd~~~~~~~~~~ 439 (638)
- .+-|++++...+ ..+-.-+-||+.|=-++.... -.++-|..+. +..|=-++= +| -.||+-.+
T Consensus 545 ~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~-g~~f~r~t~t~~ktTlYDm~--------Vd--p~~k~v~t 613 (1080)
T KOG1408|consen 545 GHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASS-GRLFPRHTQTLSKTTLYDMA--------VD--PTSKLVVT 613 (1080)
T ss_pred ccccceeEEEEeecCCceEEEeccCchhhheehhccccC-ceeccccccccccceEEEee--------eC--CCcceEEE
Confidence 4 677888886532 444455778887766664311 1111122111 111111111 23 34666667
Q ss_pred ccccccccccccCCcc-----cccccCCCceeEEEEeCCCcEEEEEeCCCCcCCCCCceEEEEeeeecCcceeeEEEEec
Q psy92 440 SLGERLEICKKIGSKH-----NDILDEFSSMGFMISDKDKNVVLFMYQPEARESNGGHRLIKKTDFHLGQHVNTFFKIRC 514 (638)
Q Consensus 440 ~~gd~~~~~~r~~~~~-----~~~~~~~~~l~~l~aD~~~nl~v~~~~~~~~~s~~~~~L~~~~~f~lg~~v~~~~~~~~ 514 (638)
+|.||-=++..+.+.- ...-+++.++--+..|..|+-..-.+. .|-....+|.-|+.|..|.-.+-
T Consensus 614 ~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScs---------dktl~~~Df~sgEcvA~m~GHsE 684 (1080)
T KOG1408|consen 614 VCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCS---------DKTLCFVDFVSGECVAQMTGHSE 684 (1080)
T ss_pred EecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeec---------CCceEEEEeccchhhhhhcCcch
Confidence 7777533322221110 000011333334444444443333332 24456677777777666533220
Q ss_pred cCCCCCCCCCCCCceEEEEEeCCCcEEEEE
Q psy92 515 KPSSISDAPGARSRFLTWYASLDGALGFFL 544 (638)
Q Consensus 515 ~~~~~~~~~~~~~~~~il~~t~~GsIg~l~ 544 (638)
.- .+- -.... -..++..+-||-|.+..
T Consensus 685 ~V-TG~-kF~nD-CkHlISvsgDgCIFvW~ 711 (1080)
T KOG1408|consen 685 AV-TGV-KFLND-CKHLISVSGDGCIFVWK 711 (1080)
T ss_pred he-eee-eeccc-chhheeecCCceEEEEE
Confidence 00 000 00111 23477888999998765
No 129
>KOG0273|consensus
Probab=56.74 E-value=2.1e+02 Score=32.07 Aligned_cols=170 Identities=16% Similarity=0.100 Sum_probs=0.0
Q ss_pred eEEEccc--cCeeEEE-ecCEEEEEEeeCCceeeeEEeecceeEEEEeeecCEEEEeeccCcEEEEEE--eccCCeEEEE
Q psy92 330 VTAICHV--AGFLVTA-VGQKIYIWQLKDNDLTGIAFIDTEVYIASMVSVKNLILVGDYARSIALLRY--QPEYRTLSLV 404 (638)
Q Consensus 330 V~al~~~--~g~Ll~a-vg~~l~v~~l~~~~L~~~a~~d~~~~i~~i~~~~~~IlvgD~~~Sv~ll~~--~~~~~~l~~~ 404 (638)
||+|.-- +..|+.| -+.-+++|......+...++...|++...=.-.|++|+-|++-+-..+..- .+...++.+-
T Consensus 238 VT~L~Wn~~G~~LatG~~~G~~riw~~~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~ 317 (524)
T KOG0273|consen 238 VTSLDWNNDGTLLATGSEDGEARIWNKDGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFH 317 (524)
T ss_pred cceEEecCCCCeEEEeecCcEEEEEecCchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeec
Q ss_pred eccCCCcce-eeeecccCCCCCcccccccceeeeeeccccccccccccCCcccccccCCCceeEEEEeCCCcEEEEEeCC
Q psy92 405 ARDYKPTQP-NSKGYYAGNPSRGIIDGSLVWKFLQLSLGERLEICKKIGSKHNDILDEFSSMGFMISDKDKNVVLFMYQP 483 (638)
Q Consensus 405 arD~~~~~v-~~~~~l~~~~~~~~vd~~~~~~~~~~~~gd~~~~~~r~~~~~~~~~~~~~~l~~l~aD~~~nl~v~~~~~ 483 (638)
.. . ..++.. + +. .|..++.++-|+|++...
T Consensus 318 s~------~~lDVdW~---------~--------------------------------~~--~F~ts~td~~i~V~kv~~ 348 (524)
T KOG0273|consen 318 SA------PALDVDWQ---------S--------------------------------ND--EFATSSTDGCIHVCKVGE 348 (524)
T ss_pred cC------CccceEEe---------c--------------------------------Cc--eEeecCCCceEEEEEecC
Q ss_pred CCcCCCCCceEEEEeeeecCcceeeEEEEeccCCCCCCCCCCCCceEEEEEeCCCcEEEEEeCChhhHHHHHHHHHHHHh
Q psy92 484 EARESNGGHRLIKKTDFHLGQHVNTFFKIRCKPSSISDAPGARSRFLTWYASLDGALGFFLPLPEKNYRRLLMLQNVMVT 563 (638)
Q Consensus 484 ~~~~s~~~~~L~~~~~f~lg~~v~~~~~~~~~~~~~~~~~~~~~~~~il~~t~~GsIg~l~pl~~~~~~~L~~Lq~~l~~ 563 (638)
+.| ...-.+....|+.+.=-+. ...+..++-||++..-.-=.......|+.-.+.+..
T Consensus 349 ~~P---------~~t~~GH~g~V~alk~n~t-------------g~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t 406 (524)
T KOG0273|consen 349 DRP---------VKTFIGHHGEVNALKWNPT-------------GSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYT 406 (524)
T ss_pred CCc---------ceeeecccCceEEEEECCC-------------CceEEEecCCCeeEeeecCCCcchhhhhhhccceee
Q ss_pred ccCCCCC
Q psy92 564 HTSHTGG 570 (638)
Q Consensus 564 ~~~~~~g 570 (638)
.-..+.|
T Consensus 407 ~~wsp~g 413 (524)
T KOG0273|consen 407 IKWSPTG 413 (524)
T ss_pred EeecCCC
No 130
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=56.72 E-value=27 Score=38.77 Aligned_cols=45 Identities=16% Similarity=0.123 Sum_probs=34.0
Q ss_pred eecCCCceeEeEEEEEEeeccC--ccCCcccEEEEeecccCCCCcccceeEEEEEE
Q psy92 249 NFPLHEWEHVLCLKNVSMEYEG--TLSGLRGYIALGTNYNYSEDVTCRGRILLFDI 302 (638)
Q Consensus 249 ~~~l~~~E~v~si~~v~l~~~~--~~~~~~~~ivVGT~~~~~ed~~~~GrI~vf~i 302 (638)
.++.+++|.++|++.+-|.... +....+.+|+||| +.|.+++|.-
T Consensus 50 ~l~~~~~e~ITsi~clpl~s~~~s~~~~dw~~I~VG~---------ssG~vrfyte 96 (415)
T PF14655_consen 50 PLDDEPGECITSILCLPLSSQKRSTGGPDWTCIAVGT---------SSGYVRFYTE 96 (415)
T ss_pred eccCCCCCEEEEEEEEEeecccccCCCCCcEEEEEEe---------cccEEEEEec
Confidence 4566677999999999885533 1122579999999 8899999974
No 131
>KOG0294|consensus
Probab=56.56 E-value=2.8e+02 Score=29.67 Aligned_cols=197 Identities=14% Similarity=0.171 Sum_probs=106.3
Q ss_pred ccEEEEEeCCCceeecceeecCCCceeEeEEEEEEeeccCccCCcccEEEEeecccCCCCcccceeEEEEEEEEeecCCC
Q psy92 231 QFHVSLFSPFSWEEIPQTNFPLHEWEHVLCLKNVSMEYEGTLSGLRGYIALGTNYNYSEDVTCRGRILLFDIIEVVPEPG 310 (638)
Q Consensus 231 ~~~i~lid~~t~~~i~~~~~~l~~~E~v~si~~v~l~~~~~~~~~~~~ivVGT~~~~~ed~~~~GrI~vf~i~~vvpe~g 310 (638)
.+.|-+.+-.+|+.+. ++.-.... |+-+. ...+ .+--|.||+ .+.|.+|.+.. |
T Consensus 106 DG~i~iw~~~~W~~~~--slK~H~~~-Vt~ls---iHPS-----~KLALsVg~----------D~~lr~WNLV~-----G 159 (362)
T KOG0294|consen 106 DGHIIIWRVGSWELLK--SLKAHKGQ-VTDLS---IHPS-----GKLALSVGG----------DQVLRTWNLVR-----G 159 (362)
T ss_pred CCcEEEEEcCCeEEee--eecccccc-cceeE---ecCC-----CceEEEEcC----------Cceeeeehhhc-----C
Confidence 3567888888898876 45444433 44332 2221 255666665 45677777764 3
Q ss_pred CccccCceEEEEEEeeCCceEEEccccCeeEEEecCEEEEEEeeCCceeeeEEeecceeEEEEeee-cCEEEEeeccCcE
Q psy92 311 QPLTKNKIKMIYAKEQKGPVTAICHVAGFLVTAVGQKIYIWQLKDNDLTGIAFIDTEVYIASMVSV-KNLILVGDYARSI 389 (638)
Q Consensus 311 ~~~t~~kLkl~~~~~~~G~V~al~~~~g~Ll~avg~~l~v~~l~~~~L~~~a~~d~~~~i~~i~~~-~~~IlvgD~~~Sv 389 (638)
+.. ..+++-+.-.. |.-. .-++++++.+-.+|-+|++++-++.+. +..+.-+.++... ++.++||=-.+-+
T Consensus 160 r~a--~v~~L~~~at~---v~w~-~~Gd~F~v~~~~~i~i~q~d~A~v~~~--i~~~~r~l~~~~l~~~~L~vG~d~~~i 231 (362)
T KOG0294|consen 160 RVA--FVLNLKNKATL---VSWS-PQGDHFVVSGRNKIDIYQLDNASVFRE--IENPKRILCATFLDGSELLVGGDNEWI 231 (362)
T ss_pred ccc--eeeccCCccee---eEEc-CCCCEEEEEeccEEEEEecccHhHhhh--hhccccceeeeecCCceEEEecCCceE
Confidence 321 22222221111 2222 345678899999999999997665432 2223334444433 4666666444444
Q ss_pred EEEEEeccCC--eEEEEeccCCCcceeeeecccCCCCCcccccccceeeeeeccccccccccccCCcccccccCCCceeE
Q psy92 390 ALLRYQPEYR--TLSLVARDYKPTQPNSKGYYAGNPSRGIIDGSLVWKFLQLSLGERLEICKKIGSKHNDILDEFSSMGF 467 (638)
Q Consensus 390 ~ll~~~~~~~--~l~~~arD~~~~~v~~~~~l~~~~~~~~vd~~~~~~~~~~~~gd~~~~~~r~~~~~~~~~~~~~~l~~ 467 (638)
.+ ++.+.. -.++.|- +.-|-++.++ -+ ++.. ++
T Consensus 232 ~~--~D~ds~~~~~~~~AH---~~RVK~i~~~--------~~-------------------------------~~~~-~l 266 (362)
T KOG0294|consen 232 SL--KDTDSDTPLTEFLAH---ENRVKDIASY--------TN-------------------------------PEHE-YL 266 (362)
T ss_pred EE--eccCCCccceeeecc---hhheeeeEEE--------ec-------------------------------CCce-EE
Confidence 33 333211 1122222 2224344333 12 1222 46
Q ss_pred EEEeCCCcEEEEEeCCCCcCCCCCceEEEEeeeecCcceeeEEE
Q psy92 468 MISDKDKNVVLFMYQPEARESNGGHRLIKKTDFHLGQHVNTFFK 511 (638)
Q Consensus 468 l~aD~~~nl~v~~~~~~~~~s~~~~~L~~~~~f~lg~~v~~~~~ 511 (638)
+.+-.+|-|.++..+-+.. .+-...+++++|..+|++.-
T Consensus 267 vTaSSDG~I~vWd~~~~~k-----~~~~~l~e~n~~~RltCl~~ 305 (362)
T KOG0294|consen 267 VTASSDGFIKVWDIDMETK-----KRPTLLAELNTNVRLTCLRV 305 (362)
T ss_pred EEeccCceEEEEEcccccc-----CCcceeEEeecCCccceeee
Confidence 6677899999988765422 24457889999999999854
No 132
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=56.00 E-value=2e+02 Score=32.35 Aligned_cols=63 Identities=22% Similarity=0.313 Sum_probs=34.4
Q ss_pred ceEEEccccCeeEEEecCE-EEEEEeeCCceeeeEEeecceeEEEEeee--cCEEEEeeccCcEEEEEEecc
Q psy92 329 PVTAICHVAGFLVTAVGQK-IYIWQLKDNDLTGIAFIDTEVYIASMVSV--KNLILVGDYARSIALLRYQPE 397 (638)
Q Consensus 329 ~V~al~~~~g~Ll~avg~~-l~v~~l~~~~L~~~a~~d~~~~i~~i~~~--~~~IlvgD~~~Sv~ll~~~~~ 397 (638)
.+..|-. |.|+...+.. |.+|+|..+++++. ++.+. +..+... ++++++. .-+++.+++|+.+
T Consensus 110 ~~~~If~--G~LL~~~~~~~i~~yDw~~~~~i~~--i~v~~-vk~V~Ws~~g~~val~-t~~~i~il~~~~~ 175 (443)
T PF04053_consen 110 SVEKIFG--GNLLGVKSSDFICFYDWETGKLIRR--IDVSA-VKYVIWSDDGELVALV-TKDSIYILKYNLE 175 (443)
T ss_dssp -EEEEE---SSSEEEEETTEEEEE-TTT--EEEE--ESS-E--EEEEE-TTSSEEEEE--S-SEEEEEE-HH
T ss_pred ccceEEc--CcEEEEECCCCEEEEEhhHcceeeE--EecCC-CcEEEEECCCCEEEEE-eCCeEEEEEecch
Confidence 3444444 8877776665 99999998776552 34332 3444433 5676665 3679999999765
No 133
>KOG0280|consensus
Probab=55.72 E-value=2.2e+02 Score=30.19 Aligned_cols=69 Identities=17% Similarity=0.195 Sum_probs=38.7
Q ss_pred CEEEEEEeeCCceeeeEEe---ecce-eE--EEEe-eecC-EEEEeeccCcEEEEEEeccCCeEEEEeccCCCccee
Q psy92 346 QKIYIWQLKDNDLTGIAFI---DTEV-YI--ASMV-SVKN-LILVGDYARSIALLRYQPEYRTLSLVARDYKPTQPN 414 (638)
Q Consensus 346 ~~l~v~~l~~~~L~~~a~~---d~~~-~i--~~i~-~~~~-~IlvgD~~~Sv~ll~~~~~~~~l~~~arD~~~~~v~ 414 (638)
.++++|++++.++.+.-.+ |+.. +. -++. +.|+ ..+..|+.-.+.+++-++......+-.=+.....++
T Consensus 46 Gkl~Lys~~d~~~~~l~~~q~~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~ 122 (339)
T KOG0280|consen 46 GKLHLYSLEDMKLSPLDTLQCTDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVV 122 (339)
T ss_pred cceEEEeecccccCccceeeeecccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhhe
Confidence 4788899998876662221 2111 11 1111 3355 456778888999998877655555533344444444
No 134
>KOG0303|consensus
Probab=55.66 E-value=2.2e+02 Score=31.34 Aligned_cols=33 Identities=27% Similarity=0.680 Sum_probs=25.1
Q ss_pred eCCceEEE--ccccCeeEEEec--CEEEEEEeeCCce
Q psy92 326 QKGPVTAI--CHVAGFLVTAVG--QKIYIWQLKDNDL 358 (638)
Q Consensus 326 ~~G~V~al--~~~~g~Ll~avg--~~l~v~~l~~~~L 358 (638)
.+|+|.-+ |+|++..+|..+ .+|+||++-++.|
T Consensus 80 Ht~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l 116 (472)
T KOG0303|consen 80 HTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGL 116 (472)
T ss_pred ccccccccccCccCCceeecCCCCceEEEEECCCccc
Confidence 45777666 789999887755 4899999987654
No 135
>KOG0291|consensus
Probab=55.21 E-value=4.3e+02 Score=31.50 Aligned_cols=113 Identities=19% Similarity=0.181 Sum_probs=69.0
Q ss_pred cceeEEEEEEEEeecCCCCccccCceEEEEEEeeCCceEEEcc-ccC-eeEEEecCEEEEEEeeCC---ceeeeE---Ee
Q psy92 293 CRGRILLFDIIEVVPEPGQPLTKNKIKMIYAKEQKGPVTAICH-VAG-FLVTAVGQKIYIWQLKDN---DLTGIA---FI 364 (638)
Q Consensus 293 ~~GrI~vf~i~~vvpe~g~~~t~~kLkl~~~~~~~G~V~al~~-~~g-~Ll~avg~~l~v~~l~~~---~L~~~a---~~ 364 (638)
-+||-+..... .=..+|...+|.+|.||+- -+| ++++|.|+-+.||...+. ++.+-. .+
T Consensus 75 E~g~~~lvs~~-------------~r~Vlh~f~fk~~v~~i~fSPng~~fav~~gn~lqiw~~P~~~~~~~~pFvl~r~~ 141 (893)
T KOG0291|consen 75 ERGRALLVSLL-------------SRSVLHRFNFKRGVGAIKFSPNGKFFAVGCGNLLQIWHAPGEIKNEFNPFVLHRTY 141 (893)
T ss_pred CCCcEEEEecc-------------cceeeEEEeecCccceEEECCCCcEEEEEecceeEEEecCcchhcccCcceEeeee
Confidence 56776665543 2236788899999999984 344 577889999999987622 232211 11
Q ss_pred ecc-eeEEEEeeec--CEEEEeeccCcEEEEEEeccCCeEEEEeccCCCcceeeeecc
Q psy92 365 DTE-VYIASMVSVK--NLILVGDYARSIALLRYQPEYRTLSLVARDYKPTQPNSKGYY 419 (638)
Q Consensus 365 d~~-~~i~~i~~~~--~~IlvgD~~~Sv~ll~~~~~~~~l~~~arD~~~~~v~~~~~l 419 (638)
-.+ --+++|.-.. ++|++|---.++.++.-+...+ +...+-....-.|.++-|-
T Consensus 142 ~g~fddi~si~Ws~DSr~l~~gsrD~s~rl~~v~~~k~-~~~~~l~gHkd~VvacfF~ 198 (893)
T KOG0291|consen 142 LGHFDDITSIDWSDDSRLLVTGSRDLSARLFGVDGNKN-LFTYALNGHKDYVVACFFG 198 (893)
T ss_pred cCCccceeEEEeccCCceEEeccccceEEEEEeccccc-cceEeccCCCcceEEEEec
Confidence 111 2366666432 5777777667888887765444 3333333444557777664
No 136
>KOG0316|consensus
Probab=54.02 E-value=2e+02 Score=29.50 Aligned_cols=54 Identities=13% Similarity=0.134 Sum_probs=36.5
Q ss_pred eEEEEeCCCcEEEEEeCCCCcCCCCCceEEEEeeeecCcceeeEEEEeccCCCCCCCCCCCCceEEEEEeCCCcEEEE
Q psy92 466 GFMISDKDKNVVLFMYQPEARESNGGHRLIKKTDFHLGQHVNTFFKIRCKPSSISDAPGARSRFLTWYASLDGALGFF 543 (638)
Q Consensus 466 ~~l~aD~~~nl~v~~~~~~~~~s~~~~~L~~~~~f~lg~~v~~~~~~~~~~~~~~~~~~~~~~~~il~~t~~GsIg~l 543 (638)
.+++.-.+|+++.|...-. ....=++|+.||+..-.+ ..+..+.++++++|-.+
T Consensus 157 eIvaGS~DGtvRtydiR~G-----------~l~sDy~g~pit~vs~s~-------------d~nc~La~~l~stlrLl 210 (307)
T KOG0316|consen 157 EIVAGSVDGTVRTYDIRKG-----------TLSSDYFGHPITSVSFSK-------------DGNCSLASSLDSTLRLL 210 (307)
T ss_pred EEEeeccCCcEEEEEeecc-----------eeehhhcCCcceeEEecC-------------CCCEEEEeeccceeeec
Confidence 4788889999999876432 344557899999874321 23467777777766543
No 137
>KOG0292|consensus
Probab=53.34 E-value=1.1e+02 Score=36.78 Aligned_cols=117 Identities=22% Similarity=0.280 Sum_probs=68.8
Q ss_pred cccEEEEeecccCCCCcccceeEEEEEEEEeecCCCCccccCceEEEEEE-eeCCceEEEcc-ccCeeEEEecC--EEEE
Q psy92 275 LRGYIALGTNYNYSEDVTCRGRILLFDIIEVVPEPGQPLTKNKIKMIYAK-EQKGPVTAICH-VAGFLVTAVGQ--KIYI 350 (638)
Q Consensus 275 ~~~~ivVGT~~~~~ed~~~~GrI~vf~i~~vvpe~g~~~t~~kLkl~~~~-~~~G~V~al~~-~~g~Ll~avg~--~l~v 350 (638)
.++.|+++- -+|.|.+||+.= -.++++. +.+|||.+++- -.+-|++.-|. ||.|
T Consensus 20 ~rPwILtsl---------HsG~IQlWDYRM-------------~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkV 77 (1202)
T KOG0292|consen 20 KRPWILTSL---------HSGVIQLWDYRM-------------GTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKV 77 (1202)
T ss_pred CCCEEEEee---------cCceeeeehhhh-------------hhHHhhhhccCCccceeeecCCCCeEEecCCccEEEE
Confidence 578888886 789999999742 2355554 57999999983 34557777665 8999
Q ss_pred EEeeCCce--eeeEEeecceeEEEEeee--cCEEEEeeccCcEEEEEEeccCCeEEEEeccCCCcceeeeecc
Q psy92 351 WQLKDNDL--TGIAFIDTEVYIASMVSV--KNLILVGDYARSIALLRYQPEYRTLSLVARDYKPTQPNSKGYY 419 (638)
Q Consensus 351 ~~l~~~~L--~~~a~~d~~~~i~~i~~~--~~~IlvgD~~~Sv~ll~~~~~~~~l~~~arD~~~~~v~~~~~l 419 (638)
|.++.++. .-.+.+| ||-.+... .-.|+-+-=-+.|-+..||. ++.+-+.+- ....|.|+.|.
T Consensus 78 WnYk~rrclftL~GHlD---YVRt~~FHheyPWIlSASDDQTIrIWNwqs--r~~iavltG-HnHYVMcAqFh 144 (1202)
T KOG0292|consen 78 WNYKTRRCLFTLLGHLD---YVRTVFFHHEYPWILSASDDQTIRIWNWQS--RKCIAVLTG-HNHYVMCAQFH 144 (1202)
T ss_pred Eecccceehhhhccccc---eeEEeeccCCCceEEEccCCCeEEEEeccC--CceEEEEec-CceEEEeeccC
Confidence 99986652 1111111 22222222 23344333334555666654 444444332 23567787786
No 138
>KOG1446|consensus
Probab=52.10 E-value=3.2e+02 Score=29.03 Aligned_cols=38 Identities=13% Similarity=0.100 Sum_probs=24.7
Q ss_pred cCCeEEEEEeCCCCCCCCCceeEEEeCCC-cccEEEEecCCCEEE
Q psy92 150 AKSELRISVLPTHLSYDAPWPVRKVPLKC-TPHFLAYHLETKTYC 193 (638)
Q Consensus 150 ~~~~L~I~~l~~~~~~~~~~~~r~ipL~~-tp~ri~y~~~~~~~~ 193 (638)
.++.|+|....+ .-.+++|+-.. -++.+.|-.+.++.+
T Consensus 34 ~dDsl~LYd~~~------g~~~~ti~skkyG~~~~~Fth~~~~~i 72 (311)
T KOG1446|consen 34 EDDSLRLYDSLS------GKQVKTINSKKYGVDLACFTHHSNTVI 72 (311)
T ss_pred CCCeEEEEEcCC------CceeeEeecccccccEEEEecCCceEE
Confidence 456888887765 46777787763 466666665555544
No 139
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=51.64 E-value=45 Score=23.32 Aligned_cols=37 Identities=16% Similarity=0.248 Sum_probs=25.4
Q ss_pred cEEEEEc--CCeEEEEEeCCCCCCCCCceeEEEeCCCcccEEEEe
Q psy92 144 GFLYFNA--KSELRISVLPTHLSYDAPWPVRKVPLKCTPHFLAYH 186 (638)
Q Consensus 144 gfl~~~~--~~~L~I~~l~~~~~~~~~~~~r~ipL~~tp~ri~y~ 186 (638)
..+|++. .+++.+ ++. .....+++++++..|+.|+++
T Consensus 4 ~~lyv~~~~~~~v~~--id~----~~~~~~~~i~vg~~P~~i~~~ 42 (42)
T TIGR02276 4 TKLYVTNSGSNTVSV--IDT----ATNKVIATIPVGGYPFGVAVS 42 (42)
T ss_pred CEEEEEeCCCCEEEE--EEC----CCCeEEEEEECCCCCceEEeC
Confidence 4567654 344444 554 235788999999999999874
No 140
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=50.87 E-value=2.5e+02 Score=27.43 Aligned_cols=124 Identities=10% Similarity=0.193 Sum_probs=63.6
Q ss_pred cEEEEeeccc-CCCCcccceeEEEEEEEEeecCCCCccccCceEEEEEEeeCCceEEEc--cccCeeEEEecC---EEEE
Q psy92 277 GYIALGTNYN-YSEDVTCRGRILLFDIIEVVPEPGQPLTKNKIKMIYAKEQKGPVTAIC--HVAGFLVTAVGQ---KIYI 350 (638)
Q Consensus 277 ~~ivVGT~~~-~~ed~~~~GrI~vf~i~~vvpe~g~~~t~~kLkl~~~~~~~G~V~al~--~~~g~Ll~avg~---~l~v 350 (638)
.+|+|=|... .......-|..-+|.+.+. +. ... ..+.+-+|+|+++. +-+.+++++.|. ++.+
T Consensus 18 ~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~----~~-----~~~-~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~l 87 (194)
T PF08662_consen 18 DYLLVKVQTRVDKSGKSYYGEFELFYLNEK----NI-----PVE-SIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTL 87 (194)
T ss_pred CEEEEEEEEeeccCcceEEeeEEEEEEecC----CC-----ccc-eeeccCCCceEEEEECcCCCEEEEEEccCCcccEE
Confidence 4555555421 1112234567778877542 11 122 22223457899985 445567666554 7999
Q ss_pred EEeeCCceeeeEEeecceeEEEEe--eecCEEEEeeccCc---EEEEEEeccCCeEEEEeccCCCcceeeeecc
Q psy92 351 WQLKDNDLTGIAFIDTEVYIASMV--SVKNLILVGDYARS---IALLRYQPEYRTLSLVARDYKPTQPNSKGYY 419 (638)
Q Consensus 351 ~~l~~~~L~~~a~~d~~~~i~~i~--~~~~~IlvgD~~~S---v~ll~~~~~~~~l~~~arD~~~~~v~~~~~l 419 (638)
|+.+.+ ++..+.. ..+..|. -.|+++++|..-.. |.| |+.+ +...++....+ .++.+++-
T Consensus 88 yd~~~~---~i~~~~~-~~~n~i~wsP~G~~l~~~g~~n~~G~l~~--wd~~--~~~~i~~~~~~-~~t~~~Ws 152 (194)
T PF08662_consen 88 YDVKGK---KIFSFGT-QPRNTISWSPDGRFLVLAGFGNLNGDLEF--WDVR--KKKKISTFEHS-DATDVEWS 152 (194)
T ss_pred EcCccc---EeEeecC-CCceEEEECCCCCEEEEEEccCCCcEEEE--EECC--CCEEeeccccC-cEEEEEEc
Confidence 998622 2233322 2233333 56889998875432 555 4443 33334443332 35666663
No 141
>PF00325 Crp: Bacterial regulatory proteins, crp family; InterPro: IPR001808 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. These proteins are very diverse, but for convenience may be grouped into subfamilies on the basis of sequence similarity. This family groups together a range of proteins, including anr, crp, clp, cysR, fixK, flp, fnr, fnrN, hlyX and ntcA [, ]. Within this family, the HTH motif is situated towards the C terminus.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 2OZ6_A 1CGP_B 2GZW_C 1O3T_B 3ROU_A 2CGP_A 3RDI_A 1I5Z_A 3IYD_H 3FWE_B ....
Probab=49.80 E-value=27 Score=24.18 Aligned_cols=26 Identities=19% Similarity=0.285 Sum_probs=21.0
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHhhhc
Q psy92 609 ERLEICKKIGSKHNDILDELYDIEAL 634 (638)
Q Consensus 609 ~q~~ia~~lg~~~~~i~~~l~~l~~~ 634 (638)
.+.+||+.+|.+++.+-+.|.++++.
T Consensus 4 tr~diA~~lG~t~ETVSR~l~~l~~~ 29 (32)
T PF00325_consen 4 TRQDIADYLGLTRETVSRILKKLERQ 29 (32)
T ss_dssp -HHHHHHHHTS-HHHHHHHHHHHHHT
T ss_pred CHHHHHHHhCCcHHHHHHHHHHHHHc
Confidence 47899999999999999988888753
No 142
>KOG0303|consensus
Probab=48.52 E-value=2.6e+02 Score=30.72 Aligned_cols=37 Identities=11% Similarity=0.190 Sum_probs=27.6
Q ss_pred eCCceEEEc-cccCeeEEEe--cCEEEEEEeeCCceeeeE
Q psy92 326 QKGPVTAIC-HVAGFLVTAV--GQKIYIWQLKDNDLTGIA 362 (638)
Q Consensus 326 ~~G~V~al~-~~~g~Ll~av--g~~l~v~~l~~~~L~~~a 362 (638)
..+-|++++ ..+|.++++. -.||+||+....+++..+
T Consensus 172 hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~ 211 (472)
T KOG0303|consen 172 HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEG 211 (472)
T ss_pred CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeec
Confidence 677888887 5677666654 458999999988776555
No 143
>KOG0640|consensus
Probab=46.67 E-value=1e+02 Score=32.78 Aligned_cols=201 Identities=11% Similarity=0.121 Sum_probs=101.2
Q ss_pred cCCeEEEEEeCCCCCCCCCceeEEEeCCCcccEEEEecCCCEEEEEEeeecCCCcccccCCccccccCCCCCCCCCCCcc
Q psy92 150 AKSELRISVLPTHLSYDAPWPVRKVPLKCTPHFLAYHLETKTYCIVTSTAEPSTDYYKFNGEDKELVTDPRDSRFIPPLV 229 (638)
Q Consensus 150 ~~~~L~I~~l~~~~~~~~~~~~r~ipL~~tp~ri~y~~~~~~~~V~~s~~~~~~~~~~~~~e~~e~~~~~~~~~~~~p~~ 229 (638)
.++++++.-+.+- ..+--.+.+.--+..|.|.+||...-++|++-+
T Consensus 192 rD~tvKlFDfsK~---saKrA~K~~qd~~~vrsiSfHPsGefllvgTdH------------------------------- 237 (430)
T KOG0640|consen 192 RDNTVKLFDFSKT---SAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDH------------------------------- 237 (430)
T ss_pred CCCeEEEEecccH---HHHHHHHHhhccceeeeEeecCCCceEEEecCC-------------------------------
Confidence 4678887766541 011111222223346778899876655555421
Q ss_pred cccEEEEEeCCCceeecceeecCCCceeEeEEEEEEeeccCccCCcccEEEEeecccCCCCcccceeEEEEEEEEeecCC
Q psy92 230 SQFHVSLFSPFSWEEIPQTNFPLHEWEHVLCLKNVSMEYEGTLSGLRGYIALGTNYNYSEDVTCRGRILLFDIIEVVPEP 309 (638)
Q Consensus 230 ~~~~i~lid~~t~~~i~~~~~~l~~~E~v~si~~v~l~~~~~~~~~~~~ivVGT~~~~~ed~~~~GrI~vf~i~~vvpe~ 309 (638)
..++|+|-.|++.--. -. .+..+--++..|.-.. ....++-|. ..|.|.+|+=+.
T Consensus 238 --p~~rlYdv~T~Qcfvs--an-Pd~qht~ai~~V~Ys~------t~~lYvTaS---------kDG~IklwDGVS----- 292 (430)
T KOG0640|consen 238 --PTLRLYDVNTYQCFVS--AN-PDDQHTGAITQVRYSS------TGSLYVTAS---------KDGAIKLWDGVS----- 292 (430)
T ss_pred --CceeEEeccceeEeee--cC-cccccccceeEEEecC------CccEEEEec---------cCCcEEeecccc-----
Confidence 1266677666664321 11 2222333444444432 235566565 789999998543
Q ss_pred CCccccCceEEEEEEeeCCc--eEEEccccCeeEEEecC--EEEEEEeeCCceeeeEEee----cceeEEEEee--ecCE
Q psy92 310 GQPLTKNKIKMIYAKEQKGP--VTAICHVAGFLVTAVGQ--KIYIWQLKDNDLTGIAFID----TEVYIASMVS--VKNL 379 (638)
Q Consensus 310 g~~~t~~kLkl~~~~~~~G~--V~al~~~~g~Ll~avg~--~l~v~~l~~~~L~~~a~~d----~~~~i~~i~~--~~~~ 379 (638)
++-++.+. ....|+ +.++-.=+|+.+...|. .+++|++..++.+..-.-. -+-.-++... -.+|
T Consensus 293 -----~rCv~t~~-~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdy 366 (430)
T KOG0640|consen 293 -----NRCVRTIG-NAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDY 366 (430)
T ss_pred -----HHHHHHHH-hhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceEEEEecCCcccchhhhhhhhhcCccce
Confidence 11122111 122222 22222346777776665 7888999877643221100 0111111111 1467
Q ss_pred EEEeeccCcEEEEEEecc---CCeEEEEeccCCCcceeee
Q psy92 380 ILVGDYARSIALLRYQPE---YRTLSLVARDYKPTQPNSK 416 (638)
Q Consensus 380 IlvgD~~~Sv~ll~~~~~---~~~l~~~arD~~~~~v~~~ 416 (638)
++.=|- +|..+..|+.. ...|..++....+||+++.
T Consensus 367 Vl~pDE-as~slcsWdaRtadr~~l~slgHn~a~R~i~HS 405 (430)
T KOG0640|consen 367 VLFPDE-ASNSLCSWDARTADRVALLSLGHNGAVRWIVHS 405 (430)
T ss_pred EEcccc-ccCceeeccccchhhhhhcccCCCCCceEEEeC
Confidence 766663 45667777653 2345556666677887764
No 144
>PF13404 HTH_AsnC-type: AsnC-type helix-turn-helix domain; PDB: 2ZNY_E 2ZNZ_G 1RI7_A 2CYY_A 2E1C_A 2VC1_B 2QZ8_A 2W29_C 2IVM_B 2VBX_B ....
Probab=46.23 E-value=25 Score=25.76 Aligned_cols=39 Identities=10% Similarity=0.225 Sum_probs=27.8
Q ss_pred eehHHHHHHHcCCHHHHHHHHHHhCCCHHHHHHHHHHhh
Q psy92 594 IDGSLVWKFLQLSLGERLEICKKIGSKHNDILDELYDIE 632 (638)
Q Consensus 594 IDGdlle~fl~L~~~~q~~ia~~lg~~~~~i~~~l~~l~ 632 (638)
+|-.+|.....=+..--.+||+++|.|...+.+.+..|+
T Consensus 4 ~D~~Il~~Lq~d~r~s~~~la~~lglS~~~v~~Ri~rL~ 42 (42)
T PF13404_consen 4 LDRKILRLLQEDGRRSYAELAEELGLSESTVRRRIRRLE 42 (42)
T ss_dssp HHHHHHHHHHH-TTS-HHHHHHHHTS-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCccHHHHHHHHCcCHHHHHHHHHHhC
Confidence 455566666555666678999999999999999888775
No 145
>KOG1332|consensus
Probab=45.13 E-value=1.4e+02 Score=30.78 Aligned_cols=95 Identities=16% Similarity=0.302 Sum_probs=63.1
Q ss_pred cceeEEEEEEEEeecCCCCccccCceEEEEEE-eeCCceEEEcc---ccCeeEEEe--cCEEEEEEeeCCceeeeEEe-e
Q psy92 293 CRGRILLFDIIEVVPEPGQPLTKNKIKMIYAK-EQKGPVTAICH---VAGFLVTAV--GQKIYIWQLKDNDLTGIAFI-D 365 (638)
Q Consensus 293 ~~GrI~vf~i~~vvpe~g~~~t~~kLkl~~~~-~~~G~V~al~~---~~g~Ll~av--g~~l~v~~l~~~~L~~~a~~-d 365 (638)
+.|-|.||++.. +...+++.+- -..|||..+.- -.|.|||.. -.||.||.-+..+..+...+ .
T Consensus 31 SD~tVkIf~v~~----------n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~k~~e~~~ 100 (299)
T KOG1332|consen 31 SDGTVKIFEVRN----------NGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWTKAYEHAA 100 (299)
T ss_pred CCccEEEEEEcC----------CCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCchhhhhhhhh
Confidence 578899999864 2234555433 36899999862 235555553 56899999887776655443 2
Q ss_pred cceeEEEEee----ecCEEEEeeccCcEEEEEEecc
Q psy92 366 TEVYIASMVS----VKNLILVGDYARSIALLRYQPE 397 (638)
Q Consensus 366 ~~~~i~~i~~----~~~~IlvgD~~~Sv~ll~~~~~ 397 (638)
....+.++.- .+-.+++|-.--.|.+|.|+.+
T Consensus 101 h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~ 136 (299)
T KOG1332|consen 101 HSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSS 136 (299)
T ss_pred hcccceeecccccccceEEEEeeCCCcEEEEEEcCC
Confidence 3344555553 3456677877789999999876
No 146
>KOG0279|consensus
Probab=45.08 E-value=3.9e+02 Score=28.09 Aligned_cols=52 Identities=29% Similarity=0.496 Sum_probs=41.3
Q ss_pred cceeEEEEEEEEeecCCCCccccCceEEEEEEeeCCceEEEccccCe--eEEEecCEEEEEEeeCCc
Q psy92 293 CRGRILLFDIIEVVPEPGQPLTKNKIKMIYAKEQKGPVTAICHVAGF--LVTAVGQKIYIWQLKDND 357 (638)
Q Consensus 293 ~~GrI~vf~i~~vvpe~g~~~t~~kLkl~~~~~~~G~V~al~~~~g~--Ll~avg~~l~v~~l~~~~ 357 (638)
..|.+++|++.+. |-++..+...+|.+||--..+ |.+|.+..|.||+++.+.
T Consensus 212 kdg~~~LwdL~~~-------------k~lysl~a~~~v~sl~fspnrywL~~at~~sIkIwdl~~~~ 265 (315)
T KOG0279|consen 212 KDGEAMLWDLNEG-------------KNLYSLEAFDIVNSLCFSPNRYWLCAATATSIKIWDLESKA 265 (315)
T ss_pred CCceEEEEEccCC-------------ceeEeccCCCeEeeEEecCCceeEeeccCCceEEEeccchh
Confidence 6799999999761 227888899999999855443 677799999999998664
No 147
>KOG1517|consensus
Probab=44.81 E-value=7.2e+02 Score=31.07 Aligned_cols=61 Identities=20% Similarity=0.222 Sum_probs=39.0
Q ss_pred cceeEEEEEEEEeecCCCCccccCceEEEEEEeeCCceEEEccccC-eeEEE-ecCEEEEEEeeCCceee
Q psy92 293 CRGRILLFDIIEVVPEPGQPLTKNKIKMIYAKEQKGPVTAICHVAG-FLVTA-VGQKIYIWQLKDNDLTG 360 (638)
Q Consensus 293 ~~GrI~vf~i~~vvpe~g~~~t~~kLkl~~~~~~~G~V~al~~~~g-~Ll~a-vg~~l~v~~l~~~~L~~ 360 (638)
..|+|.+|++.-. + ...-+..+..-+.-++.|||..-.. .++|+ .++.|.||++..++|..
T Consensus 1277 ~~G~I~~~DlR~~------~-~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~q~ikIy~~~G~~l~~ 1339 (1387)
T KOG1517|consen 1277 QDGDIQLLDLRMS------S-KETFLTIVAHWEYGSALTALTVHEHAPIIASGSAQLIKIYSLSGEQLNI 1339 (1387)
T ss_pred cCCeEEEEecccC------c-ccccceeeeccccCccceeeeeccCCCeeeecCcceEEEEecChhhhcc
Confidence 6899999998641 0 0123444554445557999975433 44444 44899999998766543
No 148
>KOG0771|consensus
Probab=44.76 E-value=4.1e+02 Score=29.21 Aligned_cols=60 Identities=18% Similarity=0.257 Sum_probs=36.6
Q ss_pred cccEEEEeecccCCCCcccceeEEEEEEEEeecCCCCccccCceEEEEEEeeCCceEEEc--cccCeeE-EEecCEEEEE
Q psy92 275 LRGYIALGTNYNYSEDVTCRGRILLFDIIEVVPEPGQPLTKNKIKMIYAKEQKGPVTAIC--HVAGFLV-TAVGQKIYIW 351 (638)
Q Consensus 275 ~~~~ivVGT~~~~~ed~~~~GrI~vf~i~~vvpe~g~~~t~~kLkl~~~~~~~G~V~al~--~~~g~Ll-~avg~~l~v~ 351 (638)
...|++||| ..|.+.+|+..+ .+.-++.++..-+.||+|+ +-..++. ++.+....|.
T Consensus 292 dGkf~AlGT---------~dGsVai~~~~~-----------lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~ 351 (398)
T KOG0771|consen 292 DGKFLALGT---------MDGSVAIYDAKS-----------LQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVT 351 (398)
T ss_pred CCcEEEEec---------cCCcEEEEEece-----------eeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEE
Confidence 469999999 789999998753 1222333445578888886 2222322 3344555555
Q ss_pred Eee
Q psy92 352 QLK 354 (638)
Q Consensus 352 ~l~ 354 (638)
.+.
T Consensus 352 ~l~ 354 (398)
T KOG0771|consen 352 KLA 354 (398)
T ss_pred EEe
Confidence 544
No 149
>PF14779 BBS1: Ciliary BBSome complex subunit 1
Probab=44.05 E-value=64 Score=33.43 Aligned_cols=59 Identities=10% Similarity=0.037 Sum_probs=39.2
Q ss_pred eEEEEeCCCcEEEEEeCCCCcCCCCCceEEEEeeeecCcceeeEEEEeccCCCCCCCCCCC-CceEEEEEeCCCcEEEEE
Q psy92 466 GFMISDKDKNVVLFMYQPEARESNGGHRLIKKTDFHLGQHVNTFFKIRCKPSSISDAPGAR-SRFLTWYASLDGALGFFL 544 (638)
Q Consensus 466 ~~l~aD~~~nl~v~~~~~~~~~s~~~~~L~~~~~f~lg~~v~~~~~~~~~~~~~~~~~~~~-~~~~il~~t~~GsIg~l~ 544 (638)
..+.+-.+|.|+++. | +-+....++.++.....+.-... .. ..+.|+-+|-+|.|+.+-
T Consensus 197 cLViGTE~~~i~iLd--~--------~af~il~~~~lpsvPv~i~~~G~----------~devdyRI~Va~Rdg~iy~ir 256 (257)
T PF14779_consen 197 CLVIGTESGEIYILD--P--------QAFTILKQVQLPSVPVFISVSGQ----------YDEVDYRIVVACRDGKIYTIR 256 (257)
T ss_pred eEEEEecCCeEEEEC--c--------hhheeEEEEecCCCceEEEEEee----------eeccceEEEEEeCCCEEEEEe
Confidence 466677788888774 3 23456667888877665533221 21 346699999999999873
No 150
>KOG4649|consensus
Probab=43.15 E-value=3.5e+02 Score=28.28 Aligned_cols=106 Identities=19% Similarity=0.209 Sum_probs=0.0
Q ss_pred EEEecCCCEEEEEEeeecCCCcccccCCccccccCCCCCCCCCCCcccccEEEEEeCCCceeecceeecCCCceeEeEEE
Q psy92 183 LAYHLETKTYCIVTSTAEPSTDYYKFNGEDKELVTDPRDSRFIPPLVSQFHVSLFSPFSWEEIPQTNFPLHEWEHVLCLK 262 (638)
Q Consensus 183 i~y~~~~~~~~V~~s~~~~~~~~~~~~~e~~e~~~~~~~~~~~~p~~~~~~i~lid~~t~~~i~~~~~~l~~~E~v~si~ 262 (638)
++..+++++++++.|+... +.-+|+.+...+. +-.+.. ++.|-.
T Consensus 16 LVV~~dskT~v~igSHs~~--------------------------------~~avd~~sG~~~W--e~ilg~--RiE~sa 59 (354)
T KOG4649|consen 16 LVVCNDSKTLVVIGSHSGI--------------------------------VIAVDPQSGNLIW--EAILGV--RIECSA 59 (354)
T ss_pred EEEecCCceEEEEecCCce--------------------------------EEEecCCCCcEEe--ehhhCc--eeeeee
Q ss_pred EEEeeccCccCCcccEEEEeecccCCCCcccceeEEEEEEEEeecCCCCccccCceEEEEEEeeCCceEEEccccCeeEE
Q psy92 263 NVSMEYEGTLSGLRGYIALGTNYNYSEDVTCRGRILLFDIIEVVPEPGQPLTKNKIKMIYAKEQKGPVTAICHVAGFLVT 342 (638)
Q Consensus 263 ~v~l~~~~~~~~~~~~ivVGT~~~~~ed~~~~GrI~vf~i~~vvpe~g~~~t~~kLkl~~~~~~~G~V~al~~~~g~Ll~ 342 (638)
+| . .+++|+|. .+|.+|++++.. ...-.-+...-.=.+.+.+.+.+.|+.
T Consensus 60 ~v-v---------gdfVV~GC---------y~g~lYfl~~~t-----------Gs~~w~f~~~~~vk~~a~~d~~~glIy 109 (354)
T KOG4649|consen 60 IV-V---------GDFVVLGC---------YSGGLYFLCVKT-----------GSQIWNFVILETVKVRAQCDFDGGLIY 109 (354)
T ss_pred EE-E---------CCEEEEEE---------ccCcEEEEEecc-----------hhheeeeeehhhhccceEEcCCCceEE
Q ss_pred EecCEEEEEEee
Q psy92 343 AVGQKIYIWQLK 354 (638)
Q Consensus 343 avg~~l~v~~l~ 354 (638)
+--..=..|.++
T Consensus 110 cgshd~~~yalD 121 (354)
T KOG4649|consen 110 CGSHDGNFYALD 121 (354)
T ss_pred EecCCCcEEEec
No 151
>PF12341 DUF3639: Protein of unknown function (DUF3639) ; InterPro: IPR022100 This domain family is found in eukaryotes, and is approximately 30 amino acids in length. The family is found in association with PF00400 from PFAM. There are two completely conserved residues (E and R) that may be functionally important.
Probab=43.09 E-value=43 Score=22.31 Aligned_cols=16 Identities=25% Similarity=0.609 Sum_probs=12.0
Q ss_pred ccEEEEeecccCCCCcccceeEEEE
Q psy92 276 RGYIALGTNYNYSEDVTCRGRILLF 300 (638)
Q Consensus 276 ~~~ivVGT~~~~~ed~~~~GrI~vf 300 (638)
..+++|+| +.+.+.+|
T Consensus 11 ~~~vavaT---------S~~~lRif 26 (27)
T PF12341_consen 11 DSWVAVAT---------SAGYLRIF 26 (27)
T ss_pred CCEEEEEe---------CCCeEEec
Confidence 58999999 55566665
No 152
>KOG4547|consensus
Probab=42.42 E-value=3.6e+02 Score=30.88 Aligned_cols=100 Identities=18% Similarity=0.208 Sum_probs=60.5
Q ss_pred CcccEEEEeecccCCCCcccceeEEEEEEEEeecCCCCccccCceEEEEE-EeeCCceEEEc-cccCeeEEEecCEEEE-
Q psy92 274 GLRGYIALGTNYNYSEDVTCRGRILLFDIIEVVPEPGQPLTKNKIKMIYA-KEQKGPVTAIC-HVAGFLVTAVGQKIYI- 350 (638)
Q Consensus 274 ~~~~~ivVGT~~~~~ed~~~~GrI~vf~i~~vvpe~g~~~t~~kLkl~~~-~~~~G~V~al~-~~~g~Ll~avg~~l~v- 350 (638)
+...++|.|| .+|.|++|++.. .+++-..+ -...|+|.++. +-+-..+..+|...++
T Consensus 68 ~~t~~lvlgt---------~~g~v~~ys~~~-----------g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~ 127 (541)
T KOG4547|consen 68 LDTSMLVLGT---------PQGSVLLYSVAG-----------GEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVV 127 (541)
T ss_pred CCceEEEeec---------CCccEEEEEecC-----------CeEEEEEecCCCCCcceeeecccccCceEecCCceeEE
Confidence 3568999999 899999999864 35554444 34679999987 3344567777776655
Q ss_pred -EEeeCCceeeeEEeecceeEEEEeeecCEEEEeeccCcEEEEEE
Q psy92 351 -WQLKDNDLTGIAFIDTEVYIASMVSVKNLILVGDYARSIALLRY 394 (638)
Q Consensus 351 -~~l~~~~L~~~a~~d~~~~i~~i~~~~~~IlvgD~~~Sv~ll~~ 394 (638)
|.++++++.++.- .-+.-+.++....+-=..+-+.+.+.++..
T Consensus 128 ~~~~~~~~~~~~~~-~~~~~~~sl~is~D~~~l~~as~~ik~~~~ 171 (541)
T KOG4547|consen 128 YILEKEKVIIRIWK-EQKPLVSSLCISPDGKILLTASRQIKVLDI 171 (541)
T ss_pred EEecccceeeeeec-cCCCccceEEEcCCCCEEEeccceEEEEEc
Confidence 4554554444332 223345555555442223335566666543
No 153
>KOG1538|consensus
Probab=42.25 E-value=6.5e+02 Score=29.76 Aligned_cols=67 Identities=22% Similarity=0.478 Sum_probs=39.0
Q ss_pred EEEEEEeeccCccCCcccEEEEeecccCCCCcccceeEEEEEEEEeecCCCCccccCceEEEEEEeeCCceEEEc-cccC
Q psy92 260 CLKNVSMEYEGTLSGLRGYIALGTNYNYSEDVTCRGRILLFDIIEVVPEPGQPLTKNKIKMIYAKEQKGPVTAIC-HVAG 338 (638)
Q Consensus 260 si~~v~l~~~~~~~~~~~~ivVGT~~~~~ed~~~~GrI~vf~i~~vvpe~g~~~t~~kLkl~~~~~~~G~V~al~-~~~g 338 (638)
|+..+-|+.++ ..-.++.| .|+++|+..+ |. -+. .-+..|..|++++ +-+|
T Consensus 14 ci~d~afkPDG----sqL~lAAg------------~rlliyD~nd-----G~-----llq--tLKgHKDtVycVAys~dG 65 (1081)
T KOG1538|consen 14 CINDIAFKPDG----TQLILAAG------------SRLLVYDTSD-----GT-----LLQ--PLKGHKDTVYCVAYAKDG 65 (1081)
T ss_pred chheeEECCCC----ceEEEecC------------CEEEEEeCCC-----cc-----ccc--ccccccceEEEEEEccCC
Confidence 77777776543 23444444 3999999764 21 111 1235677888887 4566
Q ss_pred eeEEEecC--EEEEEEee
Q psy92 339 FLVTAVGQ--KIYIWQLK 354 (638)
Q Consensus 339 ~Ll~avg~--~l~v~~l~ 354 (638)
+++|+-|. .+.+|.-+
T Consensus 66 krFASG~aDK~VI~W~~k 83 (1081)
T KOG1538|consen 66 KRFASGSADKSVIIWTSK 83 (1081)
T ss_pred ceeccCCCceeEEEeccc
Confidence 76665443 34557654
No 154
>PHA02790 Kelch-like protein; Provisional
Probab=42.21 E-value=1.5e+02 Score=33.54 Aligned_cols=69 Identities=9% Similarity=-0.033 Sum_probs=45.0
Q ss_pred CEEEEEEeeCCceeeeEEeecceeEEEEeeecCEEEE-eeccCcEEEEEEeccCCeEEEEeccCCCcceeeeecc
Q psy92 346 QKIYIWQLKDNDLTGIAFIDTEVYIASMVSVKNLILV-GDYARSIALLRYQPEYRTLSLVARDYKPTQPNSKGYY 419 (638)
Q Consensus 346 ~~l~v~~l~~~~L~~~a~~d~~~~i~~i~~~~~~Ilv-gD~~~Sv~ll~~~~~~~~l~~~arD~~~~~v~~~~~l 419 (638)
..+..|+...+++..++-+..+-.-.++.+.++.|+| |- ..-.|+++.++-..++.=..+|.-..+..+
T Consensus 376 ~~ve~ydp~~~~W~~~~~m~~~r~~~~~~~~~~~IYv~GG-----~~e~ydp~~~~W~~~~~m~~~r~~~~~~v~ 445 (480)
T PHA02790 376 TTTEYLLPNHDQWQFGPSTYYPHYKSCALVFGRRLFLVGR-----NAEFYCESSNTWTLIDDPIYPRDNPELIIV 445 (480)
T ss_pred ccEEEEeCCCCEEEeCCCCCCccccceEEEECCEEEEECC-----ceEEecCCCCcEeEcCCCCCCccccEEEEE
Confidence 4567788887777776655555555566678887765 41 234688888888877765566655555453
No 155
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=41.88 E-value=1e+02 Score=28.78 Aligned_cols=74 Identities=19% Similarity=0.231 Sum_probs=48.3
Q ss_pred CceeEeEEEEEEeeccCccCCcccEEEEeecccCCCCcccceeEEEEEEEEeecCCCCccccCceEEEEEEeeCCceEEE
Q psy92 254 EWEHVLCLKNVSMEYEGTLSGLRGYIALGTNYNYSEDVTCRGRILLFDIIEVVPEPGQPLTKNKIKMIYAKEQKGPVTAI 333 (638)
Q Consensus 254 ~~E~v~si~~v~l~~~~~~~~~~~~ivVGT~~~~~ed~~~~GrI~vf~i~~vvpe~g~~~t~~kLkl~~~~~~~G~V~al 333 (638)
=++.++|++.-.|+.+. .++.|+|||.. .|++|++.+. - -++-+++...|.||
T Consensus 46 in~~italaaG~l~~~~----~~D~LliGt~t----------~llaYDV~~N------------~-d~Fyke~~DGvn~i 98 (136)
T PF14781_consen 46 INQEITALAAGRLKPDD----GRDCLLIGTQT----------SLLAYDVENN------------S-DLFYKEVPDGVNAI 98 (136)
T ss_pred CCCceEEEEEEecCCCC----CcCEEEEeccc----------eEEEEEcccC------------c-hhhhhhCccceeEE
Confidence 34579999999997533 58999999843 6899998751 1 24445666777776
Q ss_pred c--cccC--eeEEEecCEEEEEEee
Q psy92 334 C--HVAG--FLVTAVGQKIYIWQLK 354 (638)
Q Consensus 334 ~--~~~g--~Ll~avg~~l~v~~l~ 354 (638)
. .+.+ .=++-+|...-|+.++
T Consensus 99 ~~g~~~~~~~~l~ivGGncsi~Gfd 123 (136)
T PF14781_consen 99 VIGKLGDIPSPLVIVGGNCSIQGFD 123 (136)
T ss_pred EEEecCCCCCcEEEECceEEEEEeC
Confidence 4 2333 2345556666666555
No 156
>KOG0285|consensus
Probab=41.68 E-value=2.3e+02 Score=30.81 Aligned_cols=140 Identities=16% Similarity=0.257 Sum_probs=84.3
Q ss_pred cceeEEEEEEEEeecCCCCccccCceEEEEEEeeCCceEEEccccC-eeEEEecC-EEEEEEeeCCceeeeEEeecceeE
Q psy92 293 CRGRILLFDIIEVVPEPGQPLTKNKIKMIYAKEQKGPVTAICHVAG-FLVTAVGQ-KIYIWQLKDNDLTGIAFIDTEVYI 370 (638)
Q Consensus 293 ~~GrI~vf~i~~vvpe~g~~~t~~kLkl~~~~~~~G~V~al~~~~g-~Ll~avg~-~l~v~~l~~~~L~~~a~~d~~~~i 370 (638)
..+.|.+||+.. |+ .++.-+..+-.|.|+|.--. +++|..+. .+.-|++-++.+..- +-.-...+
T Consensus 297 ~D~tvrlWDl~a-----gk-------t~~tlt~hkksvral~lhP~e~~fASas~dnik~w~~p~g~f~~n-lsgh~~ii 363 (460)
T KOG0285|consen 297 HDSTVRLWDLRA-----GK-------TMITLTHHKKSVRALCLHPKENLFASASPDNIKQWKLPEGEFLQN-LSGHNAII 363 (460)
T ss_pred CCceEEEeeecc-----Cc-------eeEeeecccceeeEEecCCchhhhhccCCccceeccCCccchhhc-ccccccee
Confidence 467888888763 21 12333455677888885433 44444443 566787776664432 11223455
Q ss_pred EEEeee-cCEEEEeeccCcEEEEEEeccCC-eEE----EEeccCCCcceeeeecccCCCCCcccccccceeeeeeccccc
Q psy92 371 ASMVSV-KNLILVGDYARSIALLRYQPEYR-TLS----LVARDYKPTQPNSKGYYAGNPSRGIIDGSLVWKFLQLSLGER 444 (638)
Q Consensus 371 ~~i~~~-~~~IlvgD~~~Sv~ll~~~~~~~-~l~----~~arD~~~~~v~~~~~l~~~~~~~~vd~~~~~~~~~~~~gd~ 444 (638)
.++.+. ++..++|-=.-+++|..|+..++ +.. .-+.=-....+++..| |
T Consensus 364 ntl~~nsD~v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~f----------D--------------- 418 (460)
T KOG0285|consen 364 NTLSVNSDGVLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCF----------D--------------- 418 (460)
T ss_pred eeeeeccCceEEEcCCceEEEEEecCcCcccccccccccCCccccccceeEEee----------c---------------
Confidence 566654 57888888888899988865422 111 1111111233566656 5
Q ss_pred cccccccCCcccccccCCCceeEEEEeCCCcEEEEEeCCCCcC
Q psy92 445 LEICKKIGSKHNDILDEFSSMGFMISDKDKNVVLFMYQPEARE 487 (638)
Q Consensus 445 ~~~~~r~~~~~~~~~~~~~~l~~l~aD~~~nl~v~~~~~~~~~ 487 (638)
.+.+.++.+..+.+|-+|..+.++.+
T Consensus 419 -----------------ktg~rlit~eadKtIk~~keDe~aT~ 444 (460)
T KOG0285|consen 419 -----------------KTGSRLITGEADKTIKMYKEDEHATE 444 (460)
T ss_pred -----------------ccCceEEeccCCcceEEEecccccCc
Confidence 45567899999999999998876554
No 157
>KOG0305|consensus
Probab=40.92 E-value=1.8e+02 Score=33.02 Aligned_cols=102 Identities=20% Similarity=0.305 Sum_probs=66.8
Q ss_pred cCeeEEEecCEEEEEEeeCCceeeeEEeecceeEEEEeee--cCEEEEeeccCcEEEEEEeccCCeEEEEeccCCCccee
Q psy92 337 AGFLVTAVGQKIYIWQLKDNDLTGIAFIDTEVYIASMVSV--KNLILVGDYARSIALLRYQPEYRTLSLVARDYKPTQPN 414 (638)
Q Consensus 337 ~g~Ll~avg~~l~v~~l~~~~L~~~a~~d~~~~i~~i~~~--~~~IlvgD~~~Sv~ll~~~~~~~~l~~~arD~~~~~v~ 414 (638)
.+.|.+|.|+.||+|+-...++...+.++ .-+++++.-. |++|.||..-.-|.++.-.+ .++..-+.-.
T Consensus 188 ~n~laValg~~vylW~~~s~~v~~l~~~~-~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~-~k~~~~~~~~------- 258 (484)
T KOG0305|consen 188 ANVLAVALGQSVYLWSASSGSVTELCSFG-EELVTSVKWSPDGSHLAVGTSDGTVQIWDVKE-QKKTRTLRGS------- 258 (484)
T ss_pred CCeEEEEecceEEEEecCCCceEEeEecC-CCceEEEEECCCCCEEEEeecCCeEEEEehhh-ccccccccCC-------
Confidence 35789999999999998888877766554 6678887755 78999998888887764322 1111111000
Q ss_pred eeecccCCCCCcccccccceeeeeecccccccc----ccccCCcccc
Q psy92 415 SKGYYAGNPSRGIIDGSLVWKFLQLSLGERLEI----CKKIGSKHND 457 (638)
Q Consensus 415 ~~~~l~~~~~~~~vd~~~~~~~~~~~~gd~~~~----~~r~~~~~~~ 457 (638)
+..- +. +|-|+...++.|.|-|. -.|.++.+..
T Consensus 259 h~~r---------vg-~laW~~~~lssGsr~~~I~~~dvR~~~~~~~ 295 (484)
T KOG0305|consen 259 HASR---------VG-SLAWNSSVLSSGSRDGKILNHDVRISQHVVS 295 (484)
T ss_pred cCce---------eE-EEeccCceEEEecCCCcEEEEEEecchhhhh
Confidence 1111 22 45688888888888887 4555555444
No 158
>KOG3914|consensus
Probab=40.35 E-value=3.7e+02 Score=29.42 Aligned_cols=102 Identities=19% Similarity=0.226 Sum_probs=57.6
Q ss_pred CcccEEEEeecccCCCCcccceeEEEEEEEEeecCCCCccccCceEEEEEEeeCCceEEEcc--ccCeeEEEecC-EEEE
Q psy92 274 GLRGYIALGTNYNYSEDVTCRGRILLFDIIEVVPEPGQPLTKNKIKMIYAKEQKGPVTAICH--VAGFLVTAVGQ-KIYI 350 (638)
Q Consensus 274 ~~~~~ivVGT~~~~~ed~~~~GrI~vf~i~~vvpe~g~~~t~~kLkl~~~~~~~G~V~al~~--~~g~Ll~avg~-~l~v 350 (638)
+...+++|+| ..-+.++|++.+. + ...|++-...+.-..+|+.. ..-+.+++.+. .++-
T Consensus 72 ~~~~llAv~~---------~~K~~~~f~~~~~------~---~~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~ 133 (390)
T KOG3914|consen 72 DSGRLVAVAT---------SSKQRAVFDYREN------P---KGAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDVYS 133 (390)
T ss_pred CCceEEEEEe---------CCCceEEEEEecC------C---CcceeeeEeecccCcceeeeeeccceEEEEeecCCcee
Confidence 3579999999 5557778888752 1 13566666666655666543 33344444332 3333
Q ss_pred EE-ee--CCceeeeEEeecceeEEEEe--eecCEEEEeeccCcEEEEEEe
Q psy92 351 WQ-LK--DNDLTGIAFIDTEVYIASMV--SVKNLILVGDYARSIALLRYQ 395 (638)
Q Consensus 351 ~~-l~--~~~L~~~a~~d~~~~i~~i~--~~~~~IlvgD~~~Sv~ll~~~ 395 (638)
++ |. +....+.. -.-+.++.+. ..+.+|+.+|--.=|.+.+|-
T Consensus 134 ~di~s~~~~~~~~~l--GhvSml~dVavS~D~~~IitaDRDEkIRvs~yp 181 (390)
T KOG3914|consen 134 FDILSADSGRCEPIL--GHVSMLLDVAVSPDDQFIITADRDEKIRVSRYP 181 (390)
T ss_pred eeeecccccCcchhh--hhhhhhheeeecCCCCEEEEecCCceEEEEecC
Confidence 22 22 22222211 1122333433 345799999999999999984
No 159
>KOG0266|consensus
Probab=39.53 E-value=5.8e+02 Score=28.46 Aligned_cols=126 Identities=14% Similarity=0.116 Sum_probs=62.5
Q ss_pred cEEEEEeCCCceeecceeecCCCceeEeEEEEEEeeccCccCCcccEEEEeecccCCCCcccceeEEEEEEEEeecCCCC
Q psy92 232 FHVSLFSPFSWEEIPQTNFPLHEWEHVLCLKNVSMEYEGTLSGLRGYIALGTNYNYSEDVTCRGRILLFDIIEVVPEPGQ 311 (638)
Q Consensus 232 ~~i~lid~~t~~~i~~~~~~l~~~E~v~si~~v~l~~~~~~~~~~~~ivVGT~~~~~ed~~~~GrI~vf~i~~vvpe~g~ 311 (638)
..+++.|..++.... ...+...|...++..+.|.. ...|+++++ ..+-+.+|++...
T Consensus 310 ~~i~vwd~~~~~~~~--~~~~~~~~~~~~~~~~~fsp------~~~~ll~~~---------~d~~~~~w~l~~~------ 366 (456)
T KOG0266|consen 310 GTIRVWDLETGSKLC--LKLLSGAENSAPVTSVQFSP------NGKYLLSAS---------LDRTLKLWDLRSG------ 366 (456)
T ss_pred ccEEEEECCCCceee--eecccCCCCCCceeEEEECC------CCcEEEEec---------CCCeEEEEEccCC------
Confidence 358888888877210 12333333332556666642 468999998 6667888887641
Q ss_pred ccccCceEEEEEEeeCC--ceEEEccc-cCeeEEE--ecCEEEEEEeeCCc-eeeeEEe-ecceeEEEEeeecCEEEEee
Q psy92 312 PLTKNKIKMIYAKEQKG--PVTAICHV-AGFLVTA--VGQKIYIWQLKDND-LTGIAFI-DTEVYIASMVSVKNLILVGD 384 (638)
Q Consensus 312 ~~t~~kLkl~~~~~~~G--~V~al~~~-~g~Ll~a--vg~~l~v~~l~~~~-L~~~a~~-d~~~~i~~i~~~~~~IlvgD 384 (638)
+....+.....+ +.++.+.+ .|.+++. ....|++|++..+. +....-. .......+.....++|..+.
T Consensus 367 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~~~~~~~~~s~s 441 (456)
T KOG0266|consen 367 -----KSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHSKAAVSDLSSHPTENLIASSS 441 (456)
T ss_pred -----cceeeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhhcCCCCCceeccccCCCcCeeeecC
Confidence 111111111122 22222323 3443333 34478889888433 3332222 22222333334456666655
Q ss_pred c
Q psy92 385 Y 385 (638)
Q Consensus 385 ~ 385 (638)
.
T Consensus 442 ~ 442 (456)
T KOG0266|consen 442 F 442 (456)
T ss_pred c
Confidence 3
No 160
>PRK01742 tolB translocation protein TolB; Provisional
Probab=39.18 E-value=4.2e+02 Score=29.19 Aligned_cols=78 Identities=9% Similarity=0.039 Sum_probs=37.4
Q ss_pred CCceEEEc-cccC-eeEEEe----cCEEEEEEeeCCceeeeEEeecceeEEEEeeecCEEEEe-eccCcEEEEEEeccCC
Q psy92 327 KGPVTAIC-HVAG-FLVTAV----GQKIYIWQLKDNDLTGIAFIDTEVYIASMVSVKNLILVG-DYARSIALLRYQPEYR 399 (638)
Q Consensus 327 ~G~V~al~-~~~g-~Ll~av----g~~l~v~~l~~~~L~~~a~~d~~~~i~~i~~~~~~Ilvg-D~~~Sv~ll~~~~~~~ 399 (638)
++++.+.+ .-+| +|+.+. +..|++|++..++...+..+..........-.+++|+++ +-.....++.++.+..
T Consensus 203 ~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~ 282 (429)
T PRK01742 203 SQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGHNGAPAFSPDGSRLAFASSKDGVLNIYVMGANGG 282 (429)
T ss_pred CCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCccCceeECCCCCEEEEEEecCCcEEEEEEECCCC
Confidence 44555544 2234 454432 136899998755433333222211122233446666654 3334455666665444
Q ss_pred eEEEE
Q psy92 400 TLSLV 404 (638)
Q Consensus 400 ~l~~~ 404 (638)
.+..+
T Consensus 283 ~~~~l 287 (429)
T PRK01742 283 TPSQL 287 (429)
T ss_pred CeEee
Confidence 44443
No 161
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=37.48 E-value=6.5e+02 Score=28.39 Aligned_cols=63 Identities=5% Similarity=-0.153 Sum_probs=35.0
Q ss_pred ccccEEEEEeCCCceeecceeecCCCc-----eeEeEEEEEEeeccCccCCcccEEEEeecccCCCCcccceeEEEEEEE
Q psy92 229 VSQFHVSLFSPFSWEEIPQTNFPLHEW-----EHVLCLKNVSMEYEGTLSGLRGYIALGTNYNYSEDVTCRGRILLFDII 303 (638)
Q Consensus 229 ~~~~~i~lid~~t~~~i~~~~~~l~~~-----E~v~si~~v~l~~~~~~~~~~~~ivVGT~~~~~ed~~~~GrI~vf~i~ 303 (638)
...+.+.-+|..+.+.+. .++.... ............. ...+...++++|+ ..|+++.|+..
T Consensus 253 ~~~~~l~Ald~~tG~~~W--~~~~~~~~~~~~~~~s~p~~~~~~~--~~g~~~~~V~~g~---------~~G~l~ald~~ 319 (488)
T cd00216 253 LYTDSIVALDADTGKVKW--FYQTTPHDLWDYDGPNQPSLADIKP--KDGKPVPAIVHAP---------KNGFFYVLDRT 319 (488)
T ss_pred CceeeEEEEcCCCCCEEE--EeeCCCCCCcccccCCCCeEEeccc--cCCCeeEEEEEEC---------CCceEEEEECC
Confidence 345678888998888877 4444321 1111111111110 1112356788888 67999998865
Q ss_pred E
Q psy92 304 E 304 (638)
Q Consensus 304 ~ 304 (638)
.
T Consensus 320 t 320 (488)
T cd00216 320 T 320 (488)
T ss_pred C
Confidence 3
No 162
>KOG2114|consensus
Probab=36.81 E-value=2.5e+02 Score=33.82 Aligned_cols=82 Identities=17% Similarity=0.215 Sum_probs=57.7
Q ss_pred cCCCceeEeEEEEEEeeccCccCCcccEEEEeecccCCCCcccceeEEEEEEEEeecCCCCccccCceEEEEEEeeCCce
Q psy92 251 PLHEWEHVLCLKNVSMEYEGTLSGLRGYIALGTNYNYSEDVTCRGRILLFDIIEVVPEPGQPLTKNKIKMIYAKEQKGPV 330 (638)
Q Consensus 251 ~l~~~E~v~si~~v~l~~~~~~~~~~~~ivVGT~~~~~ed~~~~GrI~vf~i~~vvpe~g~~~t~~kLkl~~~~~~~G~V 330 (638)
.+..++.+.|.-.|+- .-..+|||= ..|.|+.++ |.+..++-.|..+...-++||
T Consensus 120 ~np~~~~p~s~l~Vs~--------~l~~Iv~Gf---------~nG~V~~~~--------GDi~RDrgsr~~~~~~~~~pI 174 (933)
T KOG2114|consen 120 KNPTNPSPASSLAVSE--------DLKTIVCGF---------TNGLVICYK--------GDILRDRGSRQDYSHRGKEPI 174 (933)
T ss_pred CCCCCCCcceEEEEEc--------cccEEEEEe---------cCcEEEEEc--------CcchhccccceeeeccCCCCc
Confidence 3344556666555433 247888986 788888775 444445566788888889999
Q ss_pred EEEccccC---eeEEEecCEEEEEEeeCCc
Q psy92 331 TAICHVAG---FLVTAVGQKIYIWQLKDND 357 (638)
Q Consensus 331 ~al~~~~g---~Ll~avg~~l~v~~l~~~~ 357 (638)
|+|.-.++ .|+|+.-..|.+|.+..+.
T Consensus 175 TgL~~~~d~~s~lFv~Tt~~V~~y~l~gr~ 204 (933)
T KOG2114|consen 175 TGLALRSDGKSVLFVATTEQVMLYSLSGRT 204 (933)
T ss_pred eeeEEecCCceeEEEEecceeEEEEecCCC
Confidence 99974433 3688888899999998555
No 163
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=36.74 E-value=74 Score=32.04 Aligned_cols=54 Identities=19% Similarity=0.302 Sum_probs=33.8
Q ss_pred ceEEEcccc-CeeEE-EecCEEEEEEeeCCceeeeEEeecceeEEEEe--eecCEEEE
Q psy92 329 PVTAICHVA-GFLVT-AVGQKIYIWQLKDNDLTGIAFIDTEVYIASMV--SVKNLILV 382 (638)
Q Consensus 329 ~V~al~~~~-g~Ll~-avg~~l~v~~l~~~~L~~~a~~d~~~~i~~i~--~~~~~Ilv 382 (638)
-+.++|.-. ++|++ +.|.+|.+|++.++.-...+.+.+-..+.+|. ..||+|+.
T Consensus 19 EP~~~c~~g~d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv~~V~~l~y~~~GDYlvT 76 (215)
T PF14761_consen 19 EPTAVCCGGPDALFVAASGCKVEVYDLEQEECPLLCTFSTVGRVLQLVYSEAGDYLVT 76 (215)
T ss_pred CcceeeccCCceEEEEcCCCEEEEEEcccCCCceeEEEcchhheeEEEeccccceEEE
Confidence 344454444 78755 78889999999966555555555544555554 34666654
No 164
>KOG1445|consensus
Probab=36.36 E-value=2.2e+02 Score=33.09 Aligned_cols=125 Identities=18% Similarity=0.231 Sum_probs=67.8
Q ss_pred EEEeecccCCCCcccceeEEEEEEEE------eecCCCCccccCceEEEEEEeeCCceEEE--ccccCeeEEEecC--EE
Q psy92 279 IALGTNYNYSEDVTCRGRILLFDIIE------VVPEPGQPLTKNKIKMIYAKEQKGPVTAI--CHVAGFLVTAVGQ--KI 348 (638)
Q Consensus 279 ivVGT~~~~~ed~~~~GrI~vf~i~~------vvpe~g~~~t~~kLkl~~~~~~~G~V~al--~~~~g~Ll~avg~--~l 348 (638)
|.||+.-.++.....+|.++.|.+.. |+|-.++....+.+-+++. ...-|+.+ ..|.+.|+|...+ .+
T Consensus 27 i~vG~~~~~~n~I~aS~~flAFn~e~~G~~lgvlPl~~~Gr~~r~i~~l~~--H~d~VtDl~FspF~D~LLAT~S~D~~V 104 (1012)
T KOG1445|consen 27 IPVGNLSCTNNGIHASADFLAFNIEGEGGKLGVLPLTAKGRRTRDIGILAA--HGDQVTDLGFSPFADELLATCSRDEPV 104 (1012)
T ss_pred cccccccccCCCcccccceEEEeecCCCceEEEEeccccCccccccceeec--ccceeeccCccccchhhhhcccCCCee
Confidence 55777666666677778888887653 2232233222233444442 23445555 4788888877655 67
Q ss_pred EEEEeeCC---ce-eeeEEe-ecceeEEEEeee--cCEEEEeeccCcEEEEEEeccCCeEEEEec
Q psy92 349 YIWQLKDN---DL-TGIAFI-DTEVYIASMVSV--KNLILVGDYARSIALLRYQPEYRTLSLVAR 406 (638)
Q Consensus 349 ~v~~l~~~---~L-~~~a~~-d~~~~i~~i~~~--~~~IlvgD~~~Sv~ll~~~~~~~~l~~~ar 406 (638)
.||.+-.+ +| .+.+-+ .-+..+-.+... -+=|++..+.-++.+..... ...+.+++-
T Consensus 105 KiW~lp~g~~q~LSape~~~g~~~~~vE~l~fHpTaDgil~s~a~g~v~i~D~st-qk~~~el~~ 168 (1012)
T KOG1445|consen 105 KIWKLPRGHSQKLSAPEIDVGGGNVIVECLRFHPTADGILASGAHGSVYITDIST-QKTAVELSG 168 (1012)
T ss_pred EEEecCCCcccccCCcceeecCCceEEEEeecccCcCceEEeccCceEEEEEccc-CceeecccC
Confidence 88998732 34 122211 223333334332 35567777777887765533 234444443
No 165
>KOG0263|consensus
Probab=35.68 E-value=1.9e+02 Score=34.18 Aligned_cols=91 Identities=24% Similarity=0.387 Sum_probs=55.5
Q ss_pred cceeEEEEEEEEeecCCCCccccCceEEEEEEeeCCceEEEc-cccCeeEEEec--CEEEEEEeeCCceeeeEEee-cce
Q psy92 293 CRGRILLFDIIEVVPEPGQPLTKNKIKMIYAKEQKGPVTAIC-HVAGFLVTAVG--QKIYIWQLKDNDLTGIAFID-TEV 368 (638)
Q Consensus 293 ~~GrI~vf~i~~vvpe~g~~~t~~kLkl~~~~~~~G~V~al~-~~~g~Ll~avg--~~l~v~~l~~~~L~~~a~~d-~~~ 368 (638)
+.-.+.+|++.. | ...++. .-.+++|+||+ +-.|+-++.-+ ..|.+|++...+++..-.-+ ...
T Consensus 555 sD~tVRlWDv~~-----G-----~~VRiF--~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~ti 622 (707)
T KOG0263|consen 555 SDRTVRLWDVST-----G-----NSVRIF--TGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQLKGHTGTI 622 (707)
T ss_pred CCceEEEEEcCC-----C-----cEEEEe--cCCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhhhcccCce
Confidence 445677888754 2 233333 34789999997 34565555433 47899999976654322112 223
Q ss_pred eEEEEeeecCEEEEeeccCcEEEEEEe
Q psy92 369 YIASMVSVKNLILVGDYARSIALLRYQ 395 (638)
Q Consensus 369 ~i~~i~~~~~~IlvgD~~~Sv~ll~~~ 395 (638)
+-.+....|+.+++|-.-.||.+.-+.
T Consensus 623 ~SlsFS~dg~vLasgg~DnsV~lWD~~ 649 (707)
T KOG0263|consen 623 YSLSFSRDGNVLASGGADNSVRLWDLT 649 (707)
T ss_pred eEEEEecCCCEEEecCCCCeEEEEEch
Confidence 333444567888888888888887553
No 166
>KOG2394|consensus
Probab=35.49 E-value=3.9e+02 Score=30.63 Aligned_cols=78 Identities=15% Similarity=0.235 Sum_probs=52.6
Q ss_pred cCeeEEEecC--EEEEEEeeCCceeeeEE-eecceeEEEEeeecCEEEEeeccCcEEEEEEeccCCeEEEEec-cCCCcc
Q psy92 337 AGFLVTAVGQ--KIYIWQLKDNDLTGIAF-IDTEVYIASMVSVKNLILVGDYARSIALLRYQPEYRTLSLVAR-DYKPTQ 412 (638)
Q Consensus 337 ~g~Ll~avg~--~l~v~~l~~~~L~~~a~-~d~~~~i~~i~~~~~~IlvgD~~~Sv~ll~~~~~~~~l~~~ar-D~~~~~ 412 (638)
.|+.+|+|++ .|+||++...+|+.+.- +=....-++-.-.+.||++|---+=|+++.|-+ ++ .||| .-..-|
T Consensus 301 DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~e--rR--VVARGqGHkSW 376 (636)
T KOG2394|consen 301 DGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEE--RR--VVARGQGHKSW 376 (636)
T ss_pred CCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEecc--ce--EEEeccccccc
Confidence 5788899888 68999998777765331 111222233334588999998888888888743 33 3566 345679
Q ss_pred eeeeec
Q psy92 413 PNSKGY 418 (638)
Q Consensus 413 v~~~~~ 418 (638)
|+.+.|
T Consensus 377 Vs~VaF 382 (636)
T KOG2394|consen 377 VSVVAF 382 (636)
T ss_pred eeeEee
Confidence 998888
No 167
>PF13412 HTH_24: Winged helix-turn-helix DNA-binding; PDB: 1I1G_B 2IA0_B 3I4P_A 2GQQ_A 2L4A_A 2CFX_B 2DBB_B 2EFO_A 2EFQ_A 2PN6_A ....
Probab=35.34 E-value=54 Score=24.11 Aligned_cols=38 Identities=13% Similarity=0.142 Sum_probs=28.4
Q ss_pred hHHHHHHHcCCHHHHHHHHHHhCCCHHHHHHHHHHhhh
Q psy92 596 GSLVWKFLQLSLGERLEICKKIGSKHNDILDELYDIEA 633 (638)
Q Consensus 596 Gdlle~fl~L~~~~q~~ia~~lg~~~~~i~~~l~~l~~ 633 (638)
-.++....+=+.-.+.+||+++|.+...+...|.+|..
T Consensus 6 ~~Il~~l~~~~~~t~~ela~~~~is~~tv~~~l~~L~~ 43 (48)
T PF13412_consen 6 RKILNYLRENPRITQKELAEKLGISRSTVNRYLKKLEE 43 (48)
T ss_dssp HHHHHHHHHCTTS-HHHHHHHHTS-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 45566666667788999999999999988888887754
No 168
>PTZ00421 coronin; Provisional
Probab=35.06 E-value=7.2e+02 Score=28.25 Aligned_cols=130 Identities=12% Similarity=0.198 Sum_probs=61.1
Q ss_pred EEEEEeCCCceeecceeecCCCceeEeEEEEEEeeccCccCCcccEEEEeecccCCCCcccceeEEEEEEEEeecCCCCc
Q psy92 233 HVSLFSPFSWEEIPQTNFPLHEWEHVLCLKNVSMEYEGTLSGLRGYIALGTNYNYSEDVTCRGRILLFDIIEVVPEPGQP 312 (638)
Q Consensus 233 ~i~lid~~t~~~i~~~~~~l~~~E~v~si~~v~l~~~~~~~~~~~~ivVGT~~~~~ed~~~~GrI~vf~i~~vvpe~g~~ 312 (638)
.|++.|..+.+.+. .+.-.. ..+.|+ .+.. ...+++.|. ..|.|.+|++.. +
T Consensus 149 tVrIWDl~tg~~~~--~l~~h~-~~V~sl---a~sp------dG~lLatgs---------~Dg~IrIwD~rs-----g-- 200 (493)
T PTZ00421 149 VVNVWDVERGKAVE--VIKCHS-DQITSL---EWNL------DGSLLCTTS---------KDKKLNIIDPRD-----G-- 200 (493)
T ss_pred EEEEEECCCCeEEE--EEcCCC-CceEEE---EEEC------CCCEEEEec---------CCCEEEEEECCC-----C--
Confidence 46777766555432 222211 234444 3432 135777776 678999999753 1
Q ss_pred cccCceEEEEEEe-eCCceE--EEccccCeeEEEec------CEEEEEEeeCCc-eeeeEEeecceeEEE--EeeecCEE
Q psy92 313 LTKNKIKMIYAKE-QKGPVT--AICHVAGFLVTAVG------QKIYIWQLKDND-LTGIAFIDTEVYIAS--MVSVKNLI 380 (638)
Q Consensus 313 ~t~~kLkl~~~~~-~~G~V~--al~~~~g~Ll~avg------~~l~v~~l~~~~-L~~~a~~d~~~~i~~--i~~~~~~I 380 (638)
+ .+.... ..+++. ++..-.+..++++| ..|.+|++.+.+ .......+....+.. ....++++
T Consensus 201 ----~--~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L 274 (493)
T PTZ00421 201 ----T--IVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLL 274 (493)
T ss_pred ----c--EEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEE
Confidence 1 122211 223322 22222334444444 479999997432 111111222222221 22345777
Q ss_pred EEeec-cCcEEEEEEec
Q psy92 381 LVGDY-ARSIALLRYQP 396 (638)
Q Consensus 381 lvgD~-~~Sv~ll~~~~ 396 (638)
++|-. -..|.++.+..
T Consensus 275 ~lggkgDg~Iriwdl~~ 291 (493)
T PTZ00421 275 YIGSKGEGNIRCFELMN 291 (493)
T ss_pred EEEEeCCCeEEEEEeeC
Confidence 77653 44566666643
No 169
>KOG0271|consensus
Probab=34.48 E-value=4.8e+02 Score=28.69 Aligned_cols=98 Identities=15% Similarity=0.258 Sum_probs=57.3
Q ss_pred ccEEEEEeCCCceeecceeec-CCCceeEeEEEE--EEeeccCccCCcccEEEEeecccCCCCcccceeEEEEEEEEeec
Q psy92 231 QFHVSLFSPFSWEEIPQTNFP-LHEWEHVLCLKN--VSMEYEGTLSGLRGYIALGTNYNYSEDVTCRGRILLFDIIEVVP 307 (638)
Q Consensus 231 ~~~i~lid~~t~~~i~~~~~~-l~~~E~v~si~~--v~l~~~~~~~~~~~~ivVGT~~~~~ed~~~~GrI~vf~i~~vvp 307 (638)
.++|++.||++.+.+.. .+. -..| +++++- +.+.. .-.+++-+. ..|.+.||++.-
T Consensus 178 dg~I~lwdpktg~~~g~-~l~gH~K~--It~Lawep~hl~p------~~r~las~s---------kDg~vrIWd~~~--- 236 (480)
T KOG0271|consen 178 DGSIRLWDPKTGQQIGR-ALRGHKKW--ITALAWEPLHLVP------PCRRLASSS---------KDGSVRIWDTKL--- 236 (480)
T ss_pred CCeEEEecCCCCCcccc-cccCcccc--eeEEeecccccCC------Cccceeccc---------CCCCEEEEEccC---
Confidence 47899999998876642 121 1233 334332 22221 112444333 578999998753
Q ss_pred CCCCccccCceEEEEEEeeCCceEEEccc-cCeeEEE-ecCEEEEEEeeCCce
Q psy92 308 EPGQPLTKNKIKMIYAKEQKGPVTAICHV-AGFLVTA-VGQKIYIWQLKDNDL 358 (638)
Q Consensus 308 e~g~~~t~~kLkl~~~~~~~G~V~al~~~-~g~Ll~a-vg~~l~v~~l~~~~L 358 (638)
+-.++...-...+|||++-= +|.|..+ .-.+|.+|+-.+++|
T Consensus 237 ---------~~~~~~lsgHT~~VTCvrwGG~gliySgS~DrtIkvw~a~dG~~ 280 (480)
T KOG0271|consen 237 ---------GTCVRTLSGHTASVTCVRWGGEGLIYSGSQDRTIKVWRALDGKL 280 (480)
T ss_pred ---------ceEEEEeccCccceEEEEEcCCceEEecCCCceEEEEEccchhH
Confidence 22334444567899999965 4455444 334899998887654
No 170
>KOG0645|consensus
Probab=32.36 E-value=6.2e+02 Score=26.63 Aligned_cols=174 Identities=15% Similarity=0.230 Sum_probs=95.9
Q ss_pred cCCeEEEEEeCCCCCCCCCceeEEEeC---CCcccEEEEecCCCEEEEEEeeecCCCcccccCCccccccCCCCCCCCCC
Q psy92 150 AKSELRISVLPTHLSYDAPWPVRKVPL---KCTPHFLAYHLETKTYCIVTSTAEPSTDYYKFNGEDKELVTDPRDSRFIP 226 (638)
Q Consensus 150 ~~~~L~I~~l~~~~~~~~~~~~r~ipL---~~tp~ri~y~~~~~~~~V~~s~~~~~~~~~~~~~e~~e~~~~~~~~~~~~ 226 (638)
++..+||-.... .+.|..|++-- ..+.|+||++|..+.++.+.-+.
T Consensus 35 ~Dk~vriw~~~~----~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~--------------------------- 83 (312)
T KOG0645|consen 35 TDKAVRIWSTSS----GDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDA--------------------------- 83 (312)
T ss_pred CCceEEEEecCC----CCcEEEEEeccccchheeeeeeecCCCcEEEEeeccc---------------------------
Confidence 355666665553 23477776642 35899999999999554332110
Q ss_pred CcccccEEEEEe--CCCceeecceeecCCCceeEeEEEEEEeeccCccCCcccEEEEeecccCCCCcccceeEEEEEEEE
Q psy92 227 PLVSQFHVSLFS--PFSWEEIPQTNFPLHEWEHVLCLKNVSMEYEGTLSGLRGYIALGTNYNYSEDVTCRGRILLFDIIE 304 (638)
Q Consensus 227 p~~~~~~i~lid--~~t~~~i~~~~~~l~~~E~v~si~~v~l~~~~~~~~~~~~ivVGT~~~~~ed~~~~GrI~vf~i~~ 304 (638)
.+-+.. ..+|+.+. .+|=.|+|. +.|.+..+ ..|||-++ ..-.+.++++.+
T Consensus 84 ------t~~Iw~k~~~efecv~--~lEGHEnEV----K~Vaws~s------G~~LATCS---------RDKSVWiWe~de 136 (312)
T KOG0645|consen 84 ------TVVIWKKEDGEFECVA--TLEGHENEV----KCVAWSAS------GNYLATCS---------RDKSVWIWEIDE 136 (312)
T ss_pred ------eEEEeecCCCceeEEe--eeeccccce----eEEEEcCC------CCEEEEee---------CCCeEEEEEecC
Confidence 011111 22566665 677777763 55666543 47888776 344678888874
Q ss_pred eecCCCCccccCceEE---E--EEEeeCCceEEEccccCeeEEE-ecCEEEEEEee-CCceeeeEEeecce-eEEEEe--
Q psy92 305 VVPEPGQPLTKNKIKM---I--YAKEQKGPVTAICHVAGFLVTA-VGQKIYIWQLK-DNDLTGIAFIDTEV-YIASMV-- 374 (638)
Q Consensus 305 vvpe~g~~~t~~kLkl---~--~~~~~~G~V~al~~~~g~Ll~a-vg~~l~v~~l~-~~~L~~~a~~d~~~-~i~~i~-- 374 (638)
+..+.. + |..++|+.+- .+-.+.|+.+ --++|.+|.-. ++...-++.++... -+-++.
T Consensus 137 ----------ddEfec~aVL~~HtqDVK~V~W--HPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~ 204 (312)
T KOG0645|consen 137 ----------DDEFECIAVLQEHTQDVKHVIW--HPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFD 204 (312)
T ss_pred ----------CCcEEEEeeeccccccccEEEE--cCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEec
Confidence 122332 1 2223333221 2334555544 45799999877 66777777776543 222332
Q ss_pred eecCEEEEeeccCcEEEEE
Q psy92 375 SVKNLILVGDYARSIALLR 393 (638)
Q Consensus 375 ~~~~~IlvgD~~~Sv~ll~ 393 (638)
..|++++.++--.-+.+.+
T Consensus 205 ~~G~rl~s~sdD~tv~Iw~ 223 (312)
T KOG0645|consen 205 NIGSRLVSCSDDGTVSIWR 223 (312)
T ss_pred CCCceEEEecCCcceEeee
Confidence 2345666655555555554
No 171
>PF13936 HTH_38: Helix-turn-helix domain; PDB: 2W48_A.
Probab=32.18 E-value=78 Score=23.22 Aligned_cols=32 Identities=22% Similarity=0.286 Sum_probs=20.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHhCCCHHHHHHHHH
Q psy92 597 SLVWKFLQLSLGERLEICKKIGSKHNDILDELY 629 (638)
Q Consensus 597 dlle~fl~L~~~~q~~ia~~lg~~~~~i~~~l~ 629 (638)
..|+.+++.. ..+.+||+.+|.++..|.+.|.
T Consensus 11 ~~I~~l~~~G-~s~~~IA~~lg~s~sTV~relk 42 (44)
T PF13936_consen 11 NQIEALLEQG-MSIREIAKRLGRSRSTVSRELK 42 (44)
T ss_dssp -HHHHHHCS----HHHHHHHTT--HHHHHHHHH
T ss_pred HHHHHHHHcC-CCHHHHHHHHCcCcHHHHHHHh
Confidence 3466777766 4567799999999999988764
No 172
>PF08279 HTH_11: HTH domain; InterPro: IPR013196 Winged helix DNA-binding proteins share a related winged helix-turn-helix DNA-binding motif, where the "wings", or loops, are small beta-sheets. The winged helix motif consists of two wings (W1, W2), three alpha helices (H1, H2, H3) and three beta-sheets (S1, S2, S3) arranged in the order H1-S1-H2-H3-S2-W1-S3-W2 []. The DNA-recognition helix makes sequence-specific DNA contacts with the major groove of DNA, while the wings make different DNA contacts, often with the minor groove or the backbone of DNA. Several winged-helix proteins display an exposed patch of hydrophobic residues thought to mediate protein-protein interactions. This entry represents a subset of the winged helix domain superfamily which is predominantly found in bacterial proteins, though there are also some archaeal and eukaryotic examples. This domain is commonly found in the biotin (vitamin H) repressor protein BirA which regulates transcription of the biotin operon []. It is also found in other proteins including regulators of amino acid biosynthsis such as LysM [], and regulators of carbohydrate metabolisms such as LicR and FrvR [, ].; PDB: 1HXD_B 2EWN_B 1BIA_A 1BIB_A 1J5Y_A 3V7S_A 3V7C_A 3RKW_A 3RIR_A 3RKX_A ....
Probab=31.45 E-value=54 Score=24.81 Aligned_cols=27 Identities=11% Similarity=0.267 Sum_probs=22.5
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHhhhc
Q psy92 608 GERLEICKKIGSKHNDILDELYDIEAL 634 (638)
Q Consensus 608 ~~q~~ia~~lg~~~~~i~~~l~~l~~~ 634 (638)
-...++|+++|+|...|.++|.+|+..
T Consensus 16 it~~eLa~~l~vS~rTi~~~i~~L~~~ 42 (55)
T PF08279_consen 16 ITAKELAEELGVSRRTIRRDIKELREW 42 (55)
T ss_dssp BEHHHHHHHCTS-HHHHHHHHHHHHHT
T ss_pred cCHHHHHHHhCCCHHHHHHHHHHHHHC
Confidence 356799999999999999999999764
No 173
>PLN02153 epithiospecifier protein
Probab=31.23 E-value=6.5e+02 Score=26.58 Aligned_cols=72 Identities=15% Similarity=0.095 Sum_probs=35.1
Q ss_pred EEEEEEeeCCceeeeEEee---cceeEEEEeeecCEEEE-eecc-----------CcEEEEEEeccCCeEEEEecc---C
Q psy92 347 KIYIWQLKDNDLTGIAFID---TEVYIASMVSVKNLILV-GDYA-----------RSIALLRYQPEYRTLSLVARD---Y 408 (638)
Q Consensus 347 ~l~v~~l~~~~L~~~a~~d---~~~~i~~i~~~~~~Ilv-gD~~-----------~Sv~ll~~~~~~~~l~~~arD---~ 408 (638)
.+.+|+.+.++...+.... .+-.-.++.+.++.|+| |-.- ..=.+..|+.+.++-..+... +
T Consensus 160 ~v~~yd~~~~~W~~l~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~~g~~P 239 (341)
T PLN02153 160 TIEAYNIADGKWVQLPDPGENFEKRGGAGFAVVQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWTEVETTGAKP 239 (341)
T ss_pred eEEEEECCCCeEeeCCCCCCCCCCCCcceEEEECCeEEEEeccccccccCCccceecCceEEEEcCCCcEEeccccCCCC
Confidence 4667777766655433221 11112234456665544 3211 112356677777777766532 3
Q ss_pred CCcceeeeec
Q psy92 409 KPTQPNSKGY 418 (638)
Q Consensus 409 ~~~~v~~~~~ 418 (638)
.+|...++..
T Consensus 240 ~~r~~~~~~~ 249 (341)
T PLN02153 240 SARSVFAHAV 249 (341)
T ss_pred CCcceeeeEE
Confidence 3454444333
No 174
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=30.41 E-value=2.1e+02 Score=34.01 Aligned_cols=69 Identities=14% Similarity=0.183 Sum_probs=46.8
Q ss_pred cCEEEEeeccCcEEEEEEeccCCeEEEEeccCCCcceeeeecccCCCCCcccccccceeeeeeccccccccccccCCccc
Q psy92 377 KNLILVGDYARSIALLRYQPEYRTLSLVARDYKPTQPNSKGYYAGNPSRGIIDGSLVWKFLQLSLGERLEICKKIGSKHN 456 (638)
Q Consensus 377 ~~~IlvgD~~~Sv~ll~~~~~~~~l~~~arD~~~~~v~~~~~l~~~~~~~~vd~~~~~~~~~~~~gd~~~~~~r~~~~~~ 456 (638)
-.+|+|++=..+|+++.|.....+............+-++.|+ |.
T Consensus 177 ~rlIAVSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl---------~~-------------------------- 221 (717)
T PF08728_consen 177 SRLIAVSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFL---------DD-------------------------- 221 (717)
T ss_pred ceEEEEecCCceEEEEEEeccccccccccccccccCCCeeEee---------cC--------------------------
Confidence 4789999999999999997754444443333345567777786 40
Q ss_pred ccccCCCceeEEEEeCCCcEEEEEe
Q psy92 457 DILDEFSSMGFMISDKDKNVVLFMY 481 (638)
Q Consensus 457 ~~~~~~~~l~~l~aD~~~nl~v~~~ 481 (638)
..+.+....++++|-.|++++++.
T Consensus 222 -~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 222 -DLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred -CCCCccceEEEEEeccCcEEEEEE
Confidence 111121135778999999999887
No 175
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=30.20 E-value=2.8e+02 Score=28.12 Aligned_cols=72 Identities=15% Similarity=0.214 Sum_probs=48.4
Q ss_pred EccccCeeEEEecC----EEEEEEeeCCceeeeEEeec-ceeEEEEeeecCEEEEeeccCcEEEEEEeccCCeEEEEecc
Q psy92 333 ICHVAGFLVTAVGQ----KIYIWQLKDNDLTGIAFIDT-EVYIASMVSVKNLILVGDYARSIALLRYQPEYRTLSLVARD 407 (638)
Q Consensus 333 l~~~~g~Ll~avg~----~l~v~~l~~~~L~~~a~~d~-~~~i~~i~~~~~~IlvgD~~~Sv~ll~~~~~~~~l~~~arD 407 (638)
|...+|+|+.+.|+ +|++|++...+...-..++. ..+.-.|...+|++..-.-.+++.|. | +.+++.++++-
T Consensus 51 L~~~~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~-~--d~~t~~~lg~~ 127 (262)
T COG3823 51 LEYLDGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFK-Y--DADTLEELGRF 127 (262)
T ss_pred eeeeCCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEE-E--ChHHhhhhccc
Confidence 44456788888765 89999998666443333442 46666777888888887777777664 3 33556666553
No 176
>KOG1645|consensus
Probab=29.57 E-value=1.3e+02 Score=33.11 Aligned_cols=88 Identities=13% Similarity=0.041 Sum_probs=52.7
Q ss_pred EccccC-e-eEEEecCEEEEEEeeCCceeeeEEeecceeEEEEeee---cCEEEEeeccCcEEEEEEeccCCeEEEEecc
Q psy92 333 ICHVAG-F-LVTAVGQKIYIWQLKDNDLTGIAFIDTEVYIASMVSV---KNLILVGDYARSIALLRYQPEYRTLSLVARD 407 (638)
Q Consensus 333 l~~~~g-~-Ll~avg~~l~v~~l~~~~L~~~a~~d~~~~i~~i~~~---~~~IlvgD~~~Sv~ll~~~~~~~~l~~~arD 407 (638)
+.+++. . .++..|++|.|.++...-.+ ..++....+-|..-. .++|++||..-+|.++..+...+-+.++...
T Consensus 201 fSp~~~GLl~~asl~nkiki~dlet~~~v--ssy~a~~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~~~~~~~e~~a~ 278 (463)
T KOG1645|consen 201 FSPFNEGLLGLASLGNKIKIMDLETSCVV--SSYIAYNQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQPEGPLMELVAN 278 (463)
T ss_pred cCccccceeeeeccCceEEEEecccceee--eheeccCCceeeeeccCCcceeEEeccCceEEEEEccCCCchHhhhhhh
Confidence 445654 3 45669999999999854322 233444444444422 5899999999999998775444444433333
Q ss_pred CCCcceeeeecccCC
Q psy92 408 YKPTQPNSKGYYAGN 422 (638)
Q Consensus 408 ~~~~~v~~~~~l~~~ 422 (638)
.....|.++..+.+|
T Consensus 279 ~t~~pv~~i~~~~~n 293 (463)
T KOG1645|consen 279 VTINPVHKIAPVQPN 293 (463)
T ss_pred hccCcceeecccCcc
Confidence 333345555555444
No 177
>KOG2919|consensus
Probab=29.45 E-value=4.6e+02 Score=28.20 Aligned_cols=77 Identities=19% Similarity=0.336 Sum_probs=50.7
Q ss_pred ceEEEEEEeeCCceEEE--ccccCeeEEEecC--EEEEEEeeCCc-----eeeeEEeecceeEE-EEeeecCEEEEeecc
Q psy92 317 KIKMIYAKEQKGPVTAI--CHVAGFLVTAVGQ--KIYIWQLKDND-----LTGIAFIDTEVYIA-SMVSVKNLILVGDYA 386 (638)
Q Consensus 317 kLkl~~~~~~~G~V~al--~~~~g~Ll~avg~--~l~v~~l~~~~-----L~~~a~~d~~~~i~-~i~~~~~~IlvgD~~ 386 (638)
-|.+++ ..+|.||.| |++..+|+.+.-. +|..|+++.-+ |.+ ..-|++--|. .+...++++.-||-.
T Consensus 242 pl~llg--gh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~r-hv~~TNQRI~FDld~~~~~LasG~td 318 (406)
T KOG2919|consen 242 PLQLLG--GHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYALER-HVGDTNQRILFDLDPKGEILASGDTD 318 (406)
T ss_pred ceeeec--ccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccchhhhhhh-hccCccceEEEecCCCCceeeccCCC
Confidence 355666 788999998 4778899988654 88889887432 221 1112221111 244567888889999
Q ss_pred CcEEEEEEec
Q psy92 387 RSIALLRYQP 396 (638)
Q Consensus 387 ~Sv~ll~~~~ 396 (638)
-+|.+...+.
T Consensus 319 G~V~vwdlk~ 328 (406)
T KOG2919|consen 319 GSVRVWDLKD 328 (406)
T ss_pred ccEEEEecCC
Confidence 9999887654
No 178
>PF08220 HTH_DeoR: DeoR-like helix-turn-helix domain; InterPro: IPR001034 The deoR-type HTH domain is a DNA-binding, helix-turn-helix (HTH) domain of about 50-60 amino acids present in transcription regulators of the deoR family, involved in sugar catabolism. This family of prokaryotic regulators is named after the Escherichia coli protein DeoR, a repressor of the deo operon, which encodes nucleotide and deoxyribonucleotide catabolic enzymes. DeoR also negatively regulates the expression of nupG and tsx, a nucleoside-specific transport protein and a channel-forming protein, respectively. DeoR-like transcription repressors occur in diverse bacteria as regulators of sugar and nucleoside metabolic systems. The effector molecules for deoR-like regulators are generally phosphorylated intermediates of the relevant metabolic pathway. The DNA-binding deoR-type HTH domain occurs usually in the N-terminal part. The C-terminal part can contain an effector-binding domain and/or an oligomerisation domain. DeoR occurs as an octamer, whilst glpR and agaR are tetramers. Several operators may be bound simultaneously, which could facilitate DNA looping [, ].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular
Probab=29.41 E-value=66 Score=24.97 Aligned_cols=25 Identities=20% Similarity=0.316 Sum_probs=21.9
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHhhh
Q psy92 609 ERLEICKKIGSKHNDILDELYDIEA 633 (638)
Q Consensus 609 ~q~~ia~~lg~~~~~i~~~l~~l~~ 633 (638)
.-.++|+.+|+|...|.++|.+|+.
T Consensus 16 s~~ela~~~~VS~~TiRRDl~~L~~ 40 (57)
T PF08220_consen 16 SVKELAEEFGVSEMTIRRDLNKLEK 40 (57)
T ss_pred EHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 3468999999999999999999875
No 179
>KOG1240|consensus
Probab=29.31 E-value=1.3e+03 Score=29.43 Aligned_cols=58 Identities=10% Similarity=0.249 Sum_probs=32.8
Q ss_pred cCCCCeEEEEecCCceEEEecCC-CC---CccEEecccC--------CCCCCc--EEEEEcCCeEEEEEeCC
Q psy92 104 CGPHPAWLFLTSRGELRAHPMTI-DG---PVSTLAPFHN--------VNCPRG--FLYFNAKSELRISVLPT 161 (638)
Q Consensus 104 ~g~~P~~i~~~~~~~l~~~pl~~-~~---~v~~~a~F~~--------~~~~~g--fl~~~~~~~L~I~~l~~ 161 (638)
.++.+.++..+.+|..+++.+.. .+ ...+-..++- ..|++| |.+-+.+|.+++.+++.
T Consensus 1058 ~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG~v~~~~id~ 1129 (1431)
T KOG1240|consen 1058 SEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTKDGSVRVLRIDH 1129 (1431)
T ss_pred CCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEcCCCeEEEEEccc
Confidence 33447777777778888877641 11 1112222221 135543 54446789999999886
No 180
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=29.21 E-value=5.7e+02 Score=25.30 Aligned_cols=40 Identities=13% Similarity=0.134 Sum_probs=26.6
Q ss_pred cCCeEEEEEeCCCCCCCCCceeEEEeCCCcccEEEEecCCCEEEEE
Q psy92 150 AKSELRISVLPTHLSYDAPWPVRKVPLKCTPHFLAYHLETKTYCIV 195 (638)
Q Consensus 150 ~~~~L~I~~l~~~~~~~~~~~~r~ipL~~tp~ri~y~~~~~~~~V~ 195 (638)
.++.+++..+.+ .-..++++.+..|+.++++|..+.++++
T Consensus 9 ~d~~v~~~d~~t------~~~~~~~~~~~~~~~l~~~~dg~~l~~~ 48 (300)
T TIGR03866 9 KDNTISVIDTAT------LEVTRTFPVGQRPRGITLSKDGKLLYVC 48 (300)
T ss_pred CCCEEEEEECCC------CceEEEEECCCCCCceEECCCCCEEEEE
Confidence 356666665543 2356777777778899999887754433
No 181
>COG1654 BirA Biotin operon repressor [Transcription]
Probab=28.47 E-value=78 Score=26.69 Aligned_cols=26 Identities=4% Similarity=0.220 Sum_probs=23.1
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHhhh
Q psy92 608 GERLEICKKIGSKHNDILDELYDIEA 633 (638)
Q Consensus 608 ~~q~~ia~~lg~~~~~i~~~l~~l~~ 633 (638)
.-..+||++||.|...|++.|+.||.
T Consensus 20 ~SGe~La~~LgiSRtaVwK~Iq~Lr~ 45 (79)
T COG1654 20 VSGEKLAEELGISRTAVWKHIQQLRE 45 (79)
T ss_pred ccHHHHHHHHCccHHHHHHHHHHHHH
Confidence 45678999999999999999999885
No 182
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=28.14 E-value=7.5e+02 Score=26.31 Aligned_cols=53 Identities=13% Similarity=0.116 Sum_probs=28.6
Q ss_pred cCeeEEE-ecCEEEEEEeeCCceeeeEEeecceeEEEEeeecCEEEEeeccCcEEEE
Q psy92 337 AGFLVTA-VGQKIYIWQLKDNDLTGIAFIDTEVYIASMVSVKNLILVGDYARSIALL 392 (638)
Q Consensus 337 ~g~Ll~a-vg~~l~v~~l~~~~L~~~a~~d~~~~i~~i~~~~~~IlvgD~~~Sv~ll 392 (638)
+++++++ .+..++.|+..+.++.=.. +... .......++.|++++....+..+
T Consensus 241 ~~~vy~~~~~g~l~a~d~~tG~~~W~~--~~~~-~~~p~~~~~~vyv~~~~G~l~~~ 294 (377)
T TIGR03300 241 GGQVYAVSYQGRVAALDLRSGRVLWKR--DASS-YQGPAVDDNRLYVTDADGVVVAL 294 (377)
T ss_pred CCEEEEEEcCCEEEEEECCCCcEEEee--ccCC-ccCceEeCCEEEEECCCCeEEEE
Confidence 4566554 4568888888755533111 1111 12233568888888754444444
No 183
>KOG0274|consensus
Probab=28.12 E-value=9.8e+02 Score=27.61 Aligned_cols=148 Identities=16% Similarity=0.181 Sum_probs=81.1
Q ss_pred cEEEEEeCCCceeecceeecCCCceeEeEEEEEEeeccCccCCcccEEEEeecccCCCCcccceeEEEEEEEEeecCCCC
Q psy92 232 FHVSLFSPFSWEEIPQTNFPLHEWEHVLCLKNVSMEYEGTLSGLRGYIALGTNYNYSEDVTCRGRILLFDIIEVVPEPGQ 311 (638)
Q Consensus 232 ~~i~lid~~t~~~i~~~~~~l~~~E~v~si~~v~l~~~~~~~~~~~~ivVGT~~~~~ed~~~~GrI~vf~i~~vvpe~g~ 311 (638)
+.|++.++.+++.+. .+.-. ...|.|+ .+.. ..+++=|. ..+.|.+|++..
T Consensus 351 ~~v~VW~~~~~~cl~--sl~gH-~~~V~sl---~~~~-------~~~~~Sgs---------~D~~IkvWdl~~------- 401 (537)
T KOG0274|consen 351 GTVKVWDPRTGKCLK--SLSGH-TGRVYSL---IVDS-------ENRLLSGS---------LDTTIKVWDLRT------- 401 (537)
T ss_pred ceEEEEEhhhceeee--eecCC-cceEEEE---EecC-------cceEEeee---------eccceEeecCCc-------
Confidence 468888888777664 33332 1233333 3321 14444444 457888998753
Q ss_pred ccccCceEEEEEEeeC-CceEEEccccCeeEEE-ecCEEEEEEeeCCceeeeEEeecceeEEEEeeecCEEEEeeccCcE
Q psy92 312 PLTKNKIKMIYAKEQK-GPVTAICHVAGFLVTA-VGQKIYIWQLKDNDLTGIAFIDTEVYIASMVSVKNLILVGDYARSI 389 (638)
Q Consensus 312 ~~t~~kLkl~~~~~~~-G~V~al~~~~g~Ll~a-vg~~l~v~~l~~~~L~~~a~~d~~~~i~~i~~~~~~IlvgD~~~Sv 389 (638)
.+ +.++..... +-|+.+.-...+|+-+ .-.+|++|+..+++.+.+..-.-...++.+...+..|+++--..++
T Consensus 402 ----~~-~c~~tl~~h~~~v~~l~~~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~~~~il~s~~~~~~ 476 (537)
T KOG0274|consen 402 ----KR-KCIHTLQGHTSLVSSLLLRDNFLVSSSADGTIKLWDAEEGECLRTLEGRHVGGVSALALGKEEILCSSDDGSV 476 (537)
T ss_pred ----hh-hhhhhhcCCcccccccccccceeEeccccccEEEeecccCceeeeeccCCcccEEEeecCcceEEEEecCCee
Confidence 11 333333333 3334443333344443 4458999998877766544332113444555446888888888888
Q ss_pred EEEEEeccCCeEEEEeccCCCcce
Q psy92 390 ALLRYQPEYRTLSLVARDYKPTQP 413 (638)
Q Consensus 390 ~ll~~~~~~~~l~~~arD~~~~~v 413 (638)
.+...........+++.|....|-
T Consensus 477 ~l~dl~~~~~~~~l~~~~~~~~~~ 500 (537)
T KOG0274|consen 477 KLWDLRSGTLIRTLLSTDLGATWG 500 (537)
T ss_pred EEEecccCchhhhhhhcccccccc
Confidence 887665433333335666555443
No 184
>KOG1188|consensus
Probab=27.89 E-value=3.6e+02 Score=29.10 Aligned_cols=125 Identities=14% Similarity=0.150 Sum_probs=61.2
Q ss_pred ccEEEEEeCCCceeecceeecCCCceeEeEEEEEEeeccCccCCcccEEEEeecccCCCCcccceeEEEEEEEEeecCCC
Q psy92 231 QFHVSLFSPFSWEEIPQTNFPLHEWEHVLCLKNVSMEYEGTLSGLRGYIALGTNYNYSEDVTCRGRILLFDIIEVVPEPG 310 (638)
Q Consensus 231 ~~~i~lid~~t~~~i~~~~~~l~~~E~v~si~~v~l~~~~~~~~~~~~ivVGT~~~~~ed~~~~GrI~vf~i~~vvpe~g 310 (638)
.++++++|+.|.+.+- .|.-.+. ++. -+.|-+.+ .-..+..++ +.|.|.+|++..-
T Consensus 49 ngsv~lyd~~tg~~l~--~fk~~~~-~~N---~vrf~~~d----s~h~v~s~s---------sDG~Vr~wD~Rs~----- 104 (376)
T KOG1188|consen 49 NGSVRLYDKGTGQLLE--EFKGPPA-TTN---GVRFISCD----SPHGVISCS---------SDGTVRLWDIRSQ----- 104 (376)
T ss_pred CCeEEEEeccchhhhh--eecCCCC-ccc---ceEEecCC----CCCeeEEec---------cCCeEEEEEeecc-----
Confidence 3679999988866553 3332221 122 23443322 123444555 7899999999752
Q ss_pred CccccCceEEEEEEeeC-CceEEEcc-ccCeeEEE------ecCEEEEEEeeCC-ceeeeEEeec-ceeEEEEeee---c
Q psy92 311 QPLTKNKIKMIYAKEQK-GPVTAICH-VAGFLVTA------VGQKIYIWQLKDN-DLTGIAFIDT-EVYIASMVSV---K 377 (638)
Q Consensus 311 ~~~t~~kLkl~~~~~~~-G~V~al~~-~~g~Ll~a------vg~~l~v~~l~~~-~L~~~a~~d~-~~~i~~i~~~---~ 377 (638)
.+.-.+--+... -|-.++.. .++.+++| ....|++|+++.. ++++ +..+. .--||++... .
T Consensus 105 -----~e~a~~~~~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~-~~~eSH~DDVT~lrFHP~~p 178 (376)
T KOG1188|consen 105 -----AESARISWTQQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLR-QLNESHNDDVTQLRFHPSDP 178 (376)
T ss_pred -----hhhhheeccCCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhh-hhhhhccCcceeEEecCCCC
Confidence 111111111222 34455543 35566554 2336788999844 4332 11222 2235555543 3
Q ss_pred CEEEEeec
Q psy92 378 NLILVGDY 385 (638)
Q Consensus 378 ~~IlvgD~ 385 (638)
|+++-|-.
T Consensus 179 nlLlSGSv 186 (376)
T KOG1188|consen 179 NLLLSGSV 186 (376)
T ss_pred CeEEeecc
Confidence 45554433
No 185
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=27.45 E-value=1e+02 Score=23.19 Aligned_cols=20 Identities=35% Similarity=0.567 Sum_probs=17.5
Q ss_pred cccEEEEeecccCCCCcccceeEEEEEEE
Q psy92 275 LRGYIALGTNYNYSEDVTCRGRILLFDII 303 (638)
Q Consensus 275 ~~~~ivVGT~~~~~ed~~~~GrI~vf~i~ 303 (638)
..++||+|| .+|.|++|++.
T Consensus 22 ~mdLiA~~t---------~~g~v~v~Rl~ 41 (47)
T PF12894_consen 22 TMDLIALGT---------EDGEVLVYRLN 41 (47)
T ss_pred CCCEEEEEE---------CCCeEEEEECC
Confidence 468999999 89999999973
No 186
>smart00550 Zalpha Z-DNA-binding domain in adenosine deaminases. Helix-turn-helix-containing domain. Also known as Zab.
Probab=27.36 E-value=91 Score=25.14 Aligned_cols=37 Identities=16% Similarity=0.281 Sum_probs=29.0
Q ss_pred HHHHHHHcCCH--HHHHHHHHHhCCCHHHHHHHHHHhhh
Q psy92 597 SLVWKFLQLSL--GERLEICKKIGSKHNDILDELYDIEA 633 (638)
Q Consensus 597 dlle~fl~L~~--~~q~~ia~~lg~~~~~i~~~l~~l~~ 633 (638)
.+|+.+..-+. -...+||+++|.+...+.+.|..|+.
T Consensus 10 ~IL~~L~~~g~~~~ta~eLa~~lgl~~~~v~r~L~~L~~ 48 (68)
T smart00550 10 KILEFLENSGDETSTALQLAKNLGLPKKEVNRVLYSLEK 48 (68)
T ss_pred HHHHHHHHCCCCCcCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 45555555555 67899999999999999999888865
No 187
>KOG2096|consensus
Probab=27.29 E-value=8.1e+02 Score=26.40 Aligned_cols=61 Identities=20% Similarity=0.270 Sum_probs=34.6
Q ss_pred cceeEEEEEEEEeecCCCC-ccccCceEEE--EEEeeCC-ce-EEEccccCeeEEEecCEEEEEEeeCCc
Q psy92 293 CRGRILLFDIIEVVPEPGQ-PLTKNKIKMI--YAKEQKG-PV-TAICHVAGFLVTAVGQKIYIWQLKDND 357 (638)
Q Consensus 293 ~~GrI~vf~i~~vvpe~g~-~~t~~kLkl~--~~~~~~G-~V-~al~~~~g~Ll~avg~~l~v~~l~~~~ 357 (638)
..|.+.+|+++-- =+.++ | .-||.- .....-+ || .+||+-..-|.++-|+.|.+|.-++.+
T Consensus 298 kDG~wriwdtdVr-Y~~~qDp---k~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~gs~l~~~~se~g~ 363 (420)
T KOG2096|consen 298 KDGKWRIWDTDVR-YEAGQDP---KILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFGSDLKVFASEDGK 363 (420)
T ss_pred cCCcEEEeeccce-EecCCCc---hHhhcCCcchhhcCCCceEEEeCCCCcEEEeecCCceEEEEcccCc
Confidence 5799999987531 11121 1 112211 1112222 22 356666667888899999999887554
No 188
>KOG3621|consensus
Probab=27.24 E-value=2.3e+02 Score=33.26 Aligned_cols=103 Identities=15% Similarity=0.226 Sum_probs=63.1
Q ss_pred EEEccccCeeEEEecC-EEEEEEeeCCceeeeEE--eecceeEEEEeeecCEEEEeeccCcEEEEEEecc-CCeEEEEec
Q psy92 331 TAICHVAGFLVTAVGQ-KIYIWQLKDNDLTGIAF--IDTEVYIASMVSVKNLILVGDYARSIALLRYQPE-YRTLSLVAR 406 (638)
Q Consensus 331 ~al~~~~g~Ll~avg~-~l~v~~l~~~~L~~~a~--~d~~~~i~~i~~~~~~IlvgD~~~Sv~ll~~~~~-~~~l~~~ar 406 (638)
||+..-..+|.+|... .||+|.-..++++...+ -+..+.+.++.....++++|...-=|.++..+.+ +..+..++.
T Consensus 39 Tc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~~t~ 118 (726)
T KOG3621|consen 39 TCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLDYVTP 118 (726)
T ss_pred EEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcceeecc
Confidence 4455555677666544 57788766555443332 2333444455566678888887777777777654 455666555
Q ss_pred cCC--CcceeeeecccCCCCCcccccccceeeeeecccccccc
Q psy92 407 DYK--PTQPNSKGYYAGNPSRGIIDGSLVWKFLQLSLGERLEI 447 (638)
Q Consensus 407 D~~--~~~v~~~~~l~~~~~~~~vd~~~~~~~~~~~~gd~~~~ 447 (638)
-.. ++.|||+..= -| .-++--||.-|.
T Consensus 119 ~d~~~~~rVTal~Ws--------~~------~~k~ysGD~~Gk 147 (726)
T KOG3621|consen 119 CDKSHKCRVTALEWS--------KN------GMKLYSGDSQGK 147 (726)
T ss_pred ccccCCceEEEEEec--------cc------ccEEeecCCCce
Confidence 444 7889998763 24 445556777777
No 189
>KOG0302|consensus
Probab=26.94 E-value=8.6e+02 Score=26.74 Aligned_cols=151 Identities=17% Similarity=0.217 Sum_probs=0.0
Q ss_pred EEecccCCCCCCcEEEEEcCCeEEEEEeCCCCCCCCCceeEEEeCCC---cccEEEEecCCCEEEEEEeeecCCCccccc
Q psy92 132 TLAPFHNVNCPRGFLYFNAKSELRISVLPTHLSYDAPWPVRKVPLKC---TPHFLAYHLETKTYCIVTSTAEPSTDYYKF 208 (638)
Q Consensus 132 ~~a~F~~~~~~~gfl~~~~~~~L~I~~l~~~~~~~~~~~~r~ipL~~---tp~ri~y~~~~~~~~V~~s~~~~~~~~~~~ 208 (638)
..+|+..-....| +-.+.+++.+..+.. |.+-..|+-. +..-+.++|..+..+..||-.
T Consensus 218 dWSp~~~g~LlsG----Dc~~~I~lw~~~~g~-----W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~D--------- 279 (440)
T KOG0302|consen 218 DWSPIKTGRLLSG----DCVKGIHLWEPSTGS-----WKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCD--------- 279 (440)
T ss_pred ecccccccccccC----ccccceEeeeeccCc-----eeecCccccccccchhhhccCCccCceEEeeecC---------
Q ss_pred CCccccccCCCCCCCCCCCcccccEEEEEeCCCceeecceeecCCCceeEeEEEEEEeeccCccCCcccEEEEeecccCC
Q psy92 209 NGEDKELVTDPRDSRFIPPLVSQFHVSLFSPFSWEEIPQTNFPLHEWEHVLCLKNVSMEYEGTLSGLRGYIALGTNYNYS 288 (638)
Q Consensus 209 ~~e~~e~~~~~~~~~~~~p~~~~~~i~lid~~t~~~i~~~~~~l~~~E~v~si~~v~l~~~~~~~~~~~~ivVGT~~~~~ 288 (638)
.+|++-|-.+-.-.. .+-...... .+-+++... +.++|+-|-
T Consensus 280 -----------------------gsIrIWDiRs~~~~~--~~~~kAh~s--DVNVISWnr------~~~lLasG~----- 321 (440)
T KOG0302|consen 280 -----------------------GSIRIWDIRSGPKKA--AVSTKAHNS--DVNVISWNR------REPLLASGG----- 321 (440)
T ss_pred -----------------------ceEEEEEecCCCccc--eeEeeccCC--ceeeEEccC------CcceeeecC-----
Q ss_pred CCcccceeEEEEEEEEeecCCCCccccCceE--EEEEEeeCCceEEEc--cccCeeEEEecC--EEEEEEe
Q psy92 289 EDVTCRGRILLFDIIEVVPEPGQPLTKNKIK--MIYAKEQKGPVTAIC--HVAGFLVTAVGQ--KIYIWQL 353 (638)
Q Consensus 289 ed~~~~GrI~vf~i~~vvpe~g~~~t~~kLk--l~~~~~~~G~V~al~--~~~g~Ll~avg~--~l~v~~l 353 (638)
-.|.+.+|++.. +|.. +-.-+-.++|||+|. +-..-.+++.|. +|-+|+|
T Consensus 322 ----DdGt~~iwDLR~-----------~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDl 377 (440)
T KOG0302|consen 322 ----DDGTLSIWDLRQ-----------FKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDL 377 (440)
T ss_pred ----CCceEEEEEhhh-----------ccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEe
No 190
>PF11239 DUF3040: Protein of unknown function (DUF3040); InterPro: IPR021401 Some members in this family of proteins with unknown function are annotated as membrane proteins however this cannot be confirmed.
Probab=26.91 E-value=39 Score=28.45 Aligned_cols=24 Identities=25% Similarity=0.389 Sum_probs=20.9
Q ss_pred eCChhhHHHHHHHHHHHHhccCCC
Q psy92 545 PLPEKNYRRLLMLQNVMVTHTSHT 568 (638)
Q Consensus 545 pl~~~~~~~L~~Lq~~l~~~~~~~ 568 (638)
|++|++.+.|..||++|....|.+
T Consensus 2 ~LSe~E~r~L~eiEr~L~~~DP~f 25 (82)
T PF11239_consen 2 PLSEHEQRRLEEIERQLRADDPRF 25 (82)
T ss_pred CCCHHHHHHHHHHHHHHHhcCcHH
Confidence 789999999999999998887654
No 191
>PLN02153 epithiospecifier protein
Probab=26.91 E-value=6.9e+02 Score=26.40 Aligned_cols=60 Identities=10% Similarity=0.051 Sum_probs=32.2
Q ss_pred CEEEEEEeeCCceeeeEEe-ecc--eeEEEEeeecCEE-EEeecc------------CcEEEEEEeccCCeEEEEe
Q psy92 346 QKIYIWQLKDNDLTGIAFI-DTE--VYIASMVSVKNLI-LVGDYA------------RSIALLRYQPEYRTLSLVA 405 (638)
Q Consensus 346 ~~l~v~~l~~~~L~~~a~~-d~~--~~i~~i~~~~~~I-lvgD~~------------~Sv~ll~~~~~~~~l~~~a 405 (638)
+.+.+|++..+++..++.. +.+ -..+++.+.+++| ++|-.. .+-.++.|+.+..+-..+.
T Consensus 217 ~~v~~yd~~~~~W~~~~~~g~~P~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~~W~~~~ 292 (341)
T PLN02153 217 NAVQFFDPASGKWTEVETTGAKPSARSVFAHAVVGKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTETLVWEKLG 292 (341)
T ss_pred CceEEEEcCCCcEEeccccCCCCCCcceeeeEEECCEEEEECcccCCccccccccccccccEEEEEcCccEEEecc
Confidence 4678888888777765532 122 2334455666644 344421 0124566666666555554
No 192
>KOG0280|consensus
Probab=26.76 E-value=5.2e+02 Score=27.45 Aligned_cols=111 Identities=18% Similarity=0.236 Sum_probs=58.4
Q ss_pred ccEEEEeecccCCCCcc---cceeEEEEEEEEeecCCCCccccCceEEEEEEeeCCce---EEEccccCe---eEEEecC
Q psy92 276 RGYIALGTNYNYSEDVT---CRGRILLFDIIEVVPEPGQPLTKNKIKMIYAKEQKGPV---TAICHVAGF---LVTAVGQ 346 (638)
Q Consensus 276 ~~~ivVGT~~~~~ed~~---~~GrI~vf~i~~vvpe~g~~~t~~kLkl~~~~~~~G~V---~al~~~~g~---Ll~avg~ 346 (638)
++.|++||-.....|.| ..|++++|++.++..-| +..+..++..+.- -++-+..|. +.+-.-.
T Consensus 24 ~~vLa~GTY~Lde~d~~smvR~Gkl~Lys~~d~~~~~--------l~~~q~~dts~~~dm~w~~~~~~g~~~l~~a~a~G 95 (339)
T KOG0280|consen 24 RNVLAAGTYLLDEGDYPSMVRSGKLHLYSLEDMKLSP--------LDTLQCTDTSTEFDMLWRIRETDGDFNLLDAHARG 95 (339)
T ss_pred cceEEEeeEEecCCCCchheeccceEEEeecccccCc--------cceeeeecccccceeeeeeccCCccceeeeccccc
Confidence 56999999554433544 47999999998753322 2222222221111 111122222 2222333
Q ss_pred EEEEEEeeCC----ceeeeEEeeccee---EEEEeeecCEEEEeeccCcEEEEEE
Q psy92 347 KIYIWQLKDN----DLTGIAFIDTEVY---IASMVSVKNLILVGDYARSIALLRY 394 (638)
Q Consensus 347 ~l~v~~l~~~----~L~~~a~~d~~~~---i~~i~~~~~~IlvgD~~~Sv~ll~~ 394 (638)
.|.+|+.... .|.++...+..+. -..+...+.-|+++|..-++..+..
T Consensus 96 ~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~v~~ 150 (339)
T KOG0280|consen 96 QIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSISGVYE 150 (339)
T ss_pred eEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCceEEEEcCCCcEEEEec
Confidence 5666665521 2444444333322 2234456778999999999996544
No 193
>PF05920 Homeobox_KN: Homeobox KN domain; InterPro: IPR008422 This entry represents a homeobox transcription factor KN domain conserved from fungi to human and plants [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 3K2A_B 2LK2_A 1X2N_A 2DMN_A.
Probab=26.68 E-value=1.2e+02 Score=21.95 Aligned_cols=28 Identities=21% Similarity=0.276 Sum_probs=23.0
Q ss_pred CHHHHHHHHHHhCCCHHHHHHHHHHhhh
Q psy92 606 SLGERLEICKKIGSKHNDILDELYDIEA 633 (638)
Q Consensus 606 ~~~~q~~ia~~lg~~~~~i~~~l~~l~~ 633 (638)
+.+++.++|++.|.+..+|..-+.+-|+
T Consensus 12 s~~ek~~L~~~tgls~~Qi~~WF~NaRr 39 (40)
T PF05920_consen 12 SKEEKEELAKQTGLSRKQISNWFINARR 39 (40)
T ss_dssp -HHHHHHHHHHHTS-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCCHHHHHHHHHHhHc
Confidence 5678899999999999999998887765
No 194
>PRK04922 tolB translocation protein TolB; Provisional
Probab=26.59 E-value=8.5e+02 Score=26.76 Aligned_cols=80 Identities=13% Similarity=0.062 Sum_probs=38.2
Q ss_pred CCceEEEcc-ccC-eeEEEe----cCEEEEEEeeCCceeeeEEeecceeEEEEeeecCEEEEe-eccCcEEEEEEeccCC
Q psy92 327 KGPVTAICH-VAG-FLVTAV----GQKIYIWQLKDNDLTGIAFIDTEVYIASMVSVKNLILVG-DYARSIALLRYQPEYR 399 (638)
Q Consensus 327 ~G~V~al~~-~~g-~Ll~av----g~~l~v~~l~~~~L~~~a~~d~~~~i~~i~~~~~~Ilvg-D~~~Sv~ll~~~~~~~ 399 (638)
++++.+..- -+| +|+.+. ...|++|++..++...++.++.........-.++.|++. +.-..-.++.++.+..
T Consensus 203 ~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g 282 (433)
T PRK04922 203 AEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVASFRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSR 282 (433)
T ss_pred CCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEeccCCCCccCceECCCCCEEEEEEeCCCCceEEEEECCCC
Confidence 344544431 234 455443 236888998766544444333222122333446666543 3333334555555545
Q ss_pred eEEEEec
Q psy92 400 TLSLVAR 406 (638)
Q Consensus 400 ~l~~~ar 406 (638)
.+..+..
T Consensus 283 ~~~~lt~ 289 (433)
T PRK04922 283 QLTRLTN 289 (433)
T ss_pred CeEECcc
Confidence 5544443
No 195
>KOG0649|consensus
Probab=26.44 E-value=2.4e+02 Score=29.08 Aligned_cols=65 Identities=15% Similarity=0.303 Sum_probs=47.8
Q ss_pred CceEEEccccCeeEEEecCEEEEEEeeCCceeeeEEeecceeEEEEeeecCEEEEeeccCcEEEEEE
Q psy92 328 GPVTAICHVAGFLVTAVGQKIYIWQLKDNDLTGIAFIDTEVYIASMVSVKNLILVGDYARSIALLRY 394 (638)
Q Consensus 328 G~V~al~~~~g~Ll~avg~~l~v~~l~~~~L~~~a~~d~~~~i~~i~~~~~~IlvgD~~~Sv~ll~~ 394 (638)
--+-|++.-.+.|+++.|.++-+|.|...+ ..+.+..+..+..+....+.|++|---+-|.-+.|
T Consensus 209 ~wigala~~edWlvCGgGp~lslwhLrsse--~t~vfpipa~v~~v~F~~d~vl~~G~g~~v~~~~l 273 (325)
T KOG0649|consen 209 KWIGALAVNEDWLVCGGGPKLSLWHLRSSE--STCVFPIPARVHLVDFVDDCVLIGGEGNHVQSYTL 273 (325)
T ss_pred ceeEEEeccCceEEecCCCceeEEeccCCC--ceEEEecccceeEeeeecceEEEeccccceeeeee
Confidence 357888888899999999999999997433 44556667777778888888887765444444333
No 196
>KOG0643|consensus
Probab=26.24 E-value=7.8e+02 Score=25.88 Aligned_cols=207 Identities=19% Similarity=0.240 Sum_probs=120.7
Q ss_pred ccEEEEeecccCCCCcccceeEEEEEEEEeecCCCCccccCceEEEEEEeeCCceEEEc-cccCeeEEEe-----cC--E
Q psy92 276 RGYIALGTNYNYSEDVTCRGRILLFDIIEVVPEPGQPLTKNKIKMIYAKEQKGPVTAIC-HVAGFLVTAV-----GQ--K 347 (638)
Q Consensus 276 ~~~ivVGT~~~~~ed~~~~GrI~vf~i~~vvpe~g~~~t~~kLkl~~~~~~~G~V~al~-~~~g~Ll~av-----g~--~ 347 (638)
..+++-|.|-+ .+.+|++.. =|.++.-+++.||..+. .+.|.+++++ |+ .
T Consensus 64 s~~liTGSAD~---------t~kLWDv~t-------------Gk~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~ 121 (327)
T KOG0643|consen 64 SKHLITGSADQ---------TAKLWDVET-------------GKQLATWKTNSPVKRVDFSFGGNLILASTDKQMGYTCF 121 (327)
T ss_pred cceeeeccccc---------eeEEEEcCC-------------CcEEEEeecCCeeEEEeeccCCcEEEEEehhhcCcceE
Confidence 46777777433 567888742 24566677888888875 5667665553 44 3
Q ss_pred EEEEEeeCC--ceeeeE-Eeeccee---EEEEe--eecCEEEEeeccCcEEEEEEeccCC-eEEEEeccCCCcceeeeec
Q psy92 348 IYIWQLKDN--DLTGIA-FIDTEVY---IASMV--SVKNLILVGDYARSIALLRYQPEYR-TLSLVARDYKPTQPNSKGY 418 (638)
Q Consensus 348 l~v~~l~~~--~L~~~a-~~d~~~~---i~~i~--~~~~~IlvgD~~~Sv~ll~~~~~~~-~l~~~arD~~~~~v~~~~~ 418 (638)
|.+|++.+. ++.... ++..++. ++++. ..+.+|+.|+---+|.. |+...+ .++..++++. ..++.+.+
T Consensus 122 v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~--~da~~g~~~v~s~~~h~-~~Ind~q~ 198 (327)
T KOG0643|consen 122 VSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGHEDGSISI--YDARTGKELVDSDEEHS-SKINDLQF 198 (327)
T ss_pred EEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEEEecCCCcEEE--EEcccCceeeechhhhc-cccccccc
Confidence 556787732 222111 3333332 33322 46899999998888776 455443 5555555444 36777666
Q ss_pred ccCCCCCcccccccceeeeeeccccccccccccCCcccccccCCCceeEEEEeCCCcEEEEEeCCCCcCCCCCceEEEEe
Q psy92 419 YAGNPSRGIIDGSLVWKFLQLSLGERLEICKKIGSKHNDILDEFSSMGFMISDKDKNVVLFMYQPEARESNGGHRLIKKT 498 (638)
Q Consensus 419 l~~~~~~~~vd~~~~~~~~~~~~gd~~~~~~r~~~~~~~~~~~~~~l~~l~aD~~~nl~v~~~~~~~~~s~~~~~L~~~~ 498 (638)
- .| .+ +|+.+-++.+-.++.. ..|+..-
T Consensus 199 s--------~d--------------------------------~T--~FiT~s~Dttakl~D~----------~tl~v~K 226 (327)
T KOG0643|consen 199 S--------RD--------------------------------RT--YFITGSKDTTAKLVDV----------RTLEVLK 226 (327)
T ss_pred c--------CC--------------------------------cc--eEEecccCccceeeec----------cceeeEE
Confidence 4 33 33 5888877777666544 3566777
Q ss_pred eeecCcceeeEEEEeccCCCCCCCCCCCCceEEEEEe--------CCCcEEEEEeCChhhHHHH-HHHHHHHHhccCCCC
Q psy92 499 DFHLGQHVNTFFKIRCKPSSISDAPGARSRFLTWYAS--------LDGALGFFLPLPEKNYRRL-LMLQNVMVTHTSHTG 569 (638)
Q Consensus 499 ~f~lg~~v~~~~~~~~~~~~~~~~~~~~~~~~il~~t--------~~GsIg~l~pl~~~~~~~L-~~Lq~~l~~~~~~~~ 569 (638)
.|..-..||+....+. ..+.|+.|+ ..+..|-| +-|++ ..+|..+.+.--|.|
T Consensus 227 ty~te~PvN~aaisP~------------~d~VilgGGqeA~dVTTT~~r~GKF------EArFyh~i~eEEigrvkGHFG 288 (327)
T KOG0643|consen 227 TYTTERPVNTAAISPL------------LDHVILGGGQEAMDVTTTSTRAGKF------EARFYHLIFEEEIGRVKGHFG 288 (327)
T ss_pred Eeeecccccceecccc------------cceEEecCCceeeeeeeecccccch------hhhHHHHHHHHHhcccccccc
Confidence 7777777776544332 223343332 23333321 22333 345777777778888
Q ss_pred CCCccccc
Q psy92 570 GLNPRAFR 577 (638)
Q Consensus 570 gl~p~~~R 577 (638)
-+|-.+|-
T Consensus 289 PINsvAfh 296 (327)
T KOG0643|consen 289 PINSVAFH 296 (327)
T ss_pred CcceeEEC
Confidence 88877664
No 197
>KOG2114|consensus
Probab=26.17 E-value=1.2e+03 Score=28.53 Aligned_cols=97 Identities=18% Similarity=0.296 Sum_probs=56.7
Q ss_pred ccEEEEeecccCCCCcccceeEEEEEEEEeecCCCCccccCceEEEEEEee--CCceEEEccccC-eeEEEecC------
Q psy92 276 RGYIALGTNYNYSEDVTCRGRILLFDIIEVVPEPGQPLTKNKIKMIYAKEQ--KGPVTAICHVAG-FLVTAVGQ------ 346 (638)
Q Consensus 276 ~~~ivVGT~~~~~ed~~~~GrI~vf~i~~vvpe~g~~~t~~kLkl~~~~~~--~G~V~al~~~~g-~Ll~avg~------ 346 (638)
..-+|+|| ..|++..+. ..+++++.... .+.|+.|-..++ .+++++|-
T Consensus 35 ~~~vvigt---------~~G~V~~Ln--------------~s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np 91 (933)
T KOG2114|consen 35 TGSVVIGT---------ADGRVVILN--------------SSFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNP 91 (933)
T ss_pred CceEEEee---------ccccEEEec--------------ccceeeehheecchhhhhHhhcccCceEEEEEeecCCCCc
Confidence 57899999 567776663 45666554332 235888888888 56676642
Q ss_pred -EEEEEEeeCC---c---ee---eeEEeec---ceeEEEEeee--cCEEEEeeccCcEEEEEEe
Q psy92 347 -KIYIWQLKDN---D---LT---GIAFIDT---EVYIASMVSV--KNLILVGDYARSIALLRYQ 395 (638)
Q Consensus 347 -~l~v~~l~~~---~---L~---~~a~~d~---~~~i~~i~~~--~~~IlvgD~~~Sv~ll~~~ 395 (638)
.|.||++++- . +. ++-.+.. +++++++.+. -..|+||=.--.|.+++=+
T Consensus 92 ~llkiw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GD 155 (933)
T KOG2114|consen 92 VLLKIWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGD 155 (933)
T ss_pred eEEEEecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCc
Confidence 5788999722 1 22 2222111 2344444444 3577888666666665543
No 198
>PHA02762 hypothetical protein; Provisional
Probab=25.81 E-value=1.2e+02 Score=23.48 Aligned_cols=43 Identities=12% Similarity=0.071 Sum_probs=30.2
Q ss_pred cccccccc----ccccCCcccccccCCCceeEEEEeCCCcEEEEEeCCCCc
Q psy92 440 SLGERLEI----CKKIGSKHNDILDEFSSMGFMISDKDKNVVLFMYQPEAR 486 (638)
Q Consensus 440 ~~gd~~~~----~~r~~~~~~~~~~~~~~l~~l~aD~~~nl~v~~~~~~~~ 486 (638)
-+..+||| +.|.+.+. .++.....++-|.+|++--.+..|.+.
T Consensus 4 ~idn~fgnlii~~~rs~~ks----~eg~afvtigide~g~iayisiep~dk 50 (62)
T PHA02762 4 LIDNDFGNLIIEFKRNVEKS----FEGEAFVTIGIDENDKISYISIEPLDK 50 (62)
T ss_pred EecCCCccEEEEEecCcccc----ccccEEEEEeECCCCcEEEEEecccch
Confidence 35678999 66777553 235545567889999998888888643
No 199
>KOG1407|consensus
Probab=25.63 E-value=7.9e+02 Score=25.75 Aligned_cols=65 Identities=20% Similarity=0.338 Sum_probs=37.2
Q ss_pred CceEEEcc---ccCeeEEE-ecCEEEEEEeeCCce-eeeEEeecceeEEEEeeecCEEEEeeccCcEEEEE
Q psy92 328 GPVTAICH---VAGFLVTA-VGQKIYIWQLKDNDL-TGIAFIDTEVYIASMVSVKNLILVGDYARSIALLR 393 (638)
Q Consensus 328 G~V~al~~---~~g~Ll~a-vg~~l~v~~l~~~~L-~~~a~~d~~~~i~~i~~~~~~IlvgD~~~Sv~ll~ 393 (638)
+.|-.+|- -.+.+.+| .|.++++|+....+- ..+.. ...-....-...++++++|+--.=|+++-
T Consensus 65 ~svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~~~~i~~-~~eni~i~wsp~g~~~~~~~kdD~it~id 134 (313)
T KOG1407|consen 65 DSVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKCTARIET-KGENINITWSPDGEYIAVGNKDDRITFID 134 (313)
T ss_pred cchhhheeCCCCCcceEEecCCceEEEEEeccCcEEEEeec-cCcceEEEEcCCCCEEEEecCcccEEEEE
Confidence 34555542 23445544 566899999985542 22221 11222223345688999998888887774
No 200
>PF02978 SRP_SPB: Signal peptide binding domain; InterPro: IPR004125 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the M domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0008312 7S RNA binding, 0006614 SRP-dependent cotranslational protein targeting to membrane, 0048500 signal recognition particle; PDB: 2FFH_B 3NDB_B 2V3C_C 1QZW_G 1QZX_B 3KL4_A 2JQE_A 1HQ1_A 1RY1_W 1MFQ_C ....
Probab=25.34 E-value=1.1e+02 Score=27.04 Aligned_cols=28 Identities=14% Similarity=0.268 Sum_probs=22.8
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhhhc
Q psy92 607 LGERLEICKKIGSKHNDILDELYDIEAL 634 (638)
Q Consensus 607 ~~~q~~ia~~lg~~~~~i~~~l~~l~~~ 634 (638)
.+++.+||++.|++++|+.+.|...+..
T Consensus 73 ~sR~~RIA~GSG~~~~eV~~ll~~f~~~ 100 (104)
T PF02978_consen 73 ESRRRRIARGSGTTVQEVNELLKQFKQM 100 (104)
T ss_dssp HHHHHHHHHHTTS-HHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 3888999999999999999988876543
No 201
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=25.31 E-value=9e+02 Score=26.27 Aligned_cols=102 Identities=9% Similarity=-0.084 Sum_probs=54.7
Q ss_pred cEEEEEeCCCceeecceeecCCCceeEeEEEEEEeeccCccCCcccEEEEeecccCCCCcccceeEEEEEEEEeecCCCC
Q psy92 232 FHVSLFSPFSWEEIPQTNFPLHEWEHVLCLKNVSMEYEGTLSGLRGYIALGTNYNYSEDVTCRGRILLFDIIEVVPEPGQ 311 (638)
Q Consensus 232 ~~i~lid~~t~~~i~~~~~~l~~~E~v~si~~v~l~~~~~~~~~~~~ivVGT~~~~~ed~~~~GrI~vf~i~~vvpe~g~ 311 (638)
+.+-+||..+++++. .+.....=+. + +..+ .+..++..|.+.++-.-...+.|-+|+..
T Consensus 27 ~~v~ViD~~~~~v~g--~i~~G~~P~~--~----~spD-----g~~lyva~~~~~R~~~G~~~d~V~v~D~~-------- 85 (352)
T TIGR02658 27 TQVYTIDGEAGRVLG--MTDGGFLPNP--V----VASD-----GSFFAHASTVYSRIARGKRTDYVEVIDPQ-------- 85 (352)
T ss_pred ceEEEEECCCCEEEE--EEEccCCCce--e----ECCC-----CCEEEEEeccccccccCCCCCEEEEEECc--------
Confidence 679999999999876 4544332221 1 2221 34555555545554444455788888864
Q ss_pred ccccCceEEEEEEeeCCc----------eEEEccccCeeEEEe---cCEEEEEEeeCCcee
Q psy92 312 PLTKNKIKMIYAKEQKGP----------VTAICHVAGFLVTAV---GQKIYIWQLKDNDLT 359 (638)
Q Consensus 312 ~~t~~kLkl~~~~~~~G~----------V~al~~~~g~Ll~av---g~~l~v~~l~~~~L~ 359 (638)
.++.+.+.++.+- -.++..-+.+|+++. -+.|-+.++..++++
T Consensus 86 -----t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv 141 (352)
T TIGR02658 86 -----THLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFV 141 (352)
T ss_pred -----cCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEE
Confidence 3555555554333 233333333444443 346666666655543
No 202
>KOG0307|consensus
Probab=25.08 E-value=1.5e+02 Score=36.43 Aligned_cols=120 Identities=23% Similarity=0.344 Sum_probs=71.9
Q ss_pred cEEEEeecccCCCCcccceeEEEEEEEEeecCCCCccccCceEEEE-EEeeCCceEEEc--cccCeeEEEecC--EEEEE
Q psy92 277 GYIALGTNYNYSEDVTCRGRILLFDIIEVVPEPGQPLTKNKIKMIY-AKEQKGPVTAIC--HVAGFLVTAVGQ--KIYIW 351 (638)
Q Consensus 277 ~~ivVGT~~~~~ed~~~~GrI~vf~i~~vvpe~g~~~t~~kLkl~~-~~~~~G~V~al~--~~~g~Ll~avg~--~l~v~ 351 (638)
.+||=|+ ..|.|.+|+..+. ..+.++.++. ..+.+|+|..|. .+++.|+|+-++ .|.||
T Consensus 81 GlIaGG~---------edG~I~ly~p~~~-------~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iW 144 (1049)
T KOG0307|consen 81 GLIAGGL---------EDGNIVLYDPASI-------IANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIW 144 (1049)
T ss_pred ceeeccc---------cCCceEEecchhh-------ccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEe
Confidence 4566565 7899999987652 1134555554 445689999984 677878877554 79999
Q ss_pred EeeCCc--eeeeEEeecceeEEEEe------------eecCEEEEeeccCc--------------EEEEEEeccCCeEEE
Q psy92 352 QLKDND--LTGIAFIDTEVYIASMV------------SVKNLILVGDYARS--------------IALLRYQPEYRTLSL 403 (638)
Q Consensus 352 ~l~~~~--L~~~a~~d~~~~i~~i~------------~~~~~IlvgD~~~S--------------v~ll~~~~~~~~l~~ 403 (638)
++.+-+ ...- ....+.-|.++. .-.++++|=|+++. ++.+.|.++..+-..
T Consensus 145 Dlnn~~tP~~~~-~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~ 223 (1049)
T KOG0307|consen 145 DLNKPETPFTPG-SQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLL 223 (1049)
T ss_pred ccCCcCCCCCCC-CCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeee
Confidence 997422 2110 000111122211 11346666666666 677888887777777
Q ss_pred EeccCCCcce
Q psy92 404 VARDYKPTQP 413 (638)
Q Consensus 404 ~arD~~~~~v 413 (638)
+|.|-....|
T Consensus 224 ~As~dd~~Pv 233 (1049)
T KOG0307|consen 224 VASGDDSAPV 233 (1049)
T ss_pred eecCCCCCce
Confidence 7776655444
No 203
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=25.03 E-value=7.2e+02 Score=26.20 Aligned_cols=15 Identities=20% Similarity=0.543 Sum_probs=11.9
Q ss_pred cEEEEEeCC--Cceeec
Q psy92 232 FHVSLFSPF--SWEEIP 246 (638)
Q Consensus 232 ~~i~lid~~--t~~~i~ 246 (638)
.++..+||. +|+.+.
T Consensus 168 ~~v~~YDp~t~~W~~~~ 184 (346)
T TIGR03547 168 KNVLSYDPSTNQWRNLG 184 (346)
T ss_pred ceEEEEECCCCceeECc
Confidence 578999986 698775
No 204
>KOG0308|consensus
Probab=24.63 E-value=1.2e+03 Score=27.48 Aligned_cols=80 Identities=18% Similarity=0.244 Sum_probs=43.1
Q ss_pred eeCCceEEEcc-ccCeeEEEec---CEEEEEEeeCC--ceeeeE-E---eecc----eeEEEEeee--cCEEEEeeccCc
Q psy92 325 EQKGPVTAICH-VAGFLVTAVG---QKIYIWQLKDN--DLTGIA-F---IDTE----VYIASMVSV--KNLILVGDYARS 388 (638)
Q Consensus 325 ~~~G~V~al~~-~~g~Ll~avg---~~l~v~~l~~~--~L~~~a-~---~d~~----~~i~~i~~~--~~~IlvgD~~~S 388 (638)
+.+.-|.||+. .+..-++|.| .+|++|++... +|+.-. + -++. ..+-++... +..|+-|+..+=
T Consensus 115 ~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~ 194 (735)
T KOG0308|consen 115 THKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKD 194 (735)
T ss_pred cccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCcccc
Confidence 45678888876 5555444444 49999999843 221100 0 0111 122333333 347888888888
Q ss_pred EEEEEEeccCCeEEEE
Q psy92 389 IALLRYQPEYRTLSLV 404 (638)
Q Consensus 389 v~ll~~~~~~~~l~~~ 404 (638)
+-|+--+...+.|-+.
T Consensus 195 lr~wDprt~~kimkLr 210 (735)
T KOG0308|consen 195 LRLWDPRTCKKIMKLR 210 (735)
T ss_pred eEEeccccccceeeee
Confidence 7775433333344444
No 205
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=24.33 E-value=4.5e+02 Score=28.44 Aligned_cols=57 Identities=12% Similarity=0.233 Sum_probs=33.6
Q ss_pred ccCeeEEEecC-EEEEEEeeCCceeeeEEeecceeEEEEeeecCEEEEeeccCcEEEE
Q psy92 336 VAGFLVTAVGQ-KIYIWQLKDNDLTGIAFIDTEVYIASMVSVKNLILVGDYARSIALL 392 (638)
Q Consensus 336 ~~g~Ll~avg~-~l~v~~l~~~~L~~~a~~d~~~~i~~i~~~~~~IlvgD~~~Sv~ll 392 (638)
.+|+|+++... .|++++..+.+++-........+..+-.+.++.|+|++---.|..+
T Consensus 334 ~~g~l~v~~~~G~l~~ld~~tG~~~~~~~~~~~~~~s~P~~~~~~l~v~t~~G~l~~~ 391 (394)
T PRK11138 334 YNGYLVVGDSEGYLHWINREDGRFVAQQKVDSSGFLSEPVVADDKLLIQARDGTVYAI 391 (394)
T ss_pred ECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCcceeCCEEECCEEEEEeCCceEEEE
Confidence 47888777543 6777777666654332222122333444678899999775555544
No 206
>PF08954 DUF1900: Domain of unknown function (DUF1900); InterPro: IPR015049 This domain is predominantly found in the structural protein coronin, and is duplicated in some sequences. It has no known function []. ; PDB: 2B4E_A 2AQ5_A.
Probab=24.20 E-value=2.1e+02 Score=26.67 Aligned_cols=49 Identities=12% Similarity=0.169 Sum_probs=31.8
Q ss_pred CCCceeEEEEeCCCcEEEEEeCCCCcCCCCCceEEEEeeeecCcceeeEEEEecc
Q psy92 461 EFSSMGFMISDKDKNVVLFMYQPEARESNGGHRLIKKTDFHLGQHVNTFFKIRCK 515 (638)
Q Consensus 461 ~~~~l~~l~aD~~~nl~v~~~~~~~~~s~~~~~L~~~~~f~lg~~v~~~~~~~~~ 515 (638)
+|+.+-++++--++|++.|+..++++ .|....+|..++....+...+.+
T Consensus 20 ~dt~llyl~gKGD~~ir~yEv~~~~p------~l~~l~~~~s~~~~~G~~~lPK~ 68 (136)
T PF08954_consen 20 EDTNLLYLAGKGDGNIRYYEVSDESP------YLHYLSEYRSPEPQKGFAFLPKR 68 (136)
T ss_dssp TTT-EEEEEETT-S-EEEEEE-SSTT------SEEEEEEE--SS--SEEEE--GG
T ss_pred CCCCEEEEEeccCcEEEEEEEcCCCC------ceEEccccccCCCeEeeEecCcc
Confidence 58888899998899999999987533 68888999999888888776643
No 207
>PF02954 HTH_8: Bacterial regulatory protein, Fis family; InterPro: IPR002197 The Factor for Inversion Stimulation (FIS) protein is a regulator of bacterial functions, and binds specifically to weakly related DNA sequences [,]. It activates ribosomal RNA transcription, and is involved in upstream activation of rRNA promoters. The protein has been shown to play a role in the regulation of virulence factors in both Salmonella typhimurium and Escherichia coli []. Some of its functions include inhibition of the initiation of DNA replication from the OriC site, and promotion of Hin-mediated DNA inversion. In its C-terminal extremity, FIS encodes a helix-turn-helix (HTH) DNA- binding motif, which shares a high degree of similarity with other HTH motifs of more primitive bacterial transcriptional regulators, such as the nitrogen assimilation regulatory proteins (NtrC) from species like Azobacter, Rhodobacter and Rhizobium. This has led to speculation that both evolved from a single common ancestor []. The 3-dimensional structure of the E. coli FIS DNA-binding protein has been determined by means of X-ray diffraction to 2.0A resolution [,]. FIS is composed of four alpha-helices tightly intertwined to form a globular dimer with two protruding HTH motifs. The 24 N-terminal amino acids are poorly defined, indicating that they might act as `feelers' suitable for DNA or protein (invertase) recognition []. Other proteins belonging to this subfamily include: E. coli: atoC, hydG, ntrC, fhlA, tyrR, Rhizobium spp.: ntrC, nifA, dctD ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NTC_A 3JRH_A 3JRB_A 3IV5_A 3JRI_A 1ETQ_A 1ETW_B 1ETY_A 3JRF_A 3JRA_A ....
Probab=24.16 E-value=74 Score=23.01 Aligned_cols=36 Identities=14% Similarity=0.236 Sum_probs=27.6
Q ss_pred ehHHHHHHHcCCHHHHHHHHHHhCCCHHHHHHHHHH
Q psy92 595 DGSLVWKFLQLSLGERLEICKKIGSKHNDILDELYD 630 (638)
Q Consensus 595 DGdlle~fl~L~~~~q~~ia~~lg~~~~~i~~~l~~ 630 (638)
.-++|+.-|.-....+.+.|+.||++...+..+|..
T Consensus 6 E~~~i~~aL~~~~gn~~~aA~~Lgisr~tL~~klkk 41 (42)
T PF02954_consen 6 EKQLIRQALERCGGNVSKAARLLGISRRTLYRKLKK 41 (42)
T ss_dssp HHHHHHHHHHHTTT-HHHHHHHHTS-HHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHCCCHHHHHHHHHh
Confidence 446677777777777899999999999999988864
No 208
>PHA02790 Kelch-like protein; Provisional
Probab=24.05 E-value=4e+02 Score=30.05 Aligned_cols=81 Identities=16% Similarity=0.127 Sum_probs=43.9
Q ss_pred ccCeeEEEec-------CEEEEEEeeCCceeeeEEeecceeEEEEeeecCEE-EEeeccCcEEEEEEeccCCeEEEEecc
Q psy92 336 VAGFLVTAVG-------QKIYIWQLKDNDLTGIAFIDTEVYIASMVSVKNLI-LVGDYARSIALLRYQPEYRTLSLVARD 407 (638)
Q Consensus 336 ~~g~Ll~avg-------~~l~v~~l~~~~L~~~a~~d~~~~i~~i~~~~~~I-lvgD~~~Sv~ll~~~~~~~~l~~~arD 407 (638)
.++.|++.-| +++..|+...+++..++.+..+-.-.++.+.++.| ++|-....-.+-+|++..++-..++.=
T Consensus 270 ~~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l 349 (480)
T PHA02790 270 VGEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVPANNKLYVVGGLPNPTSVERWFHGDAAWVNMPSL 349 (480)
T ss_pred ECCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEEECCEEEEECCcCCCCceEEEECCCCeEEECCCC
Confidence 4455544444 25667887777766655443222222344566666 455432222356788877777777665
Q ss_pred CCCcceeee
Q psy92 408 YKPTQPNSK 416 (638)
Q Consensus 408 ~~~~~v~~~ 416 (638)
..+|.-.++
T Consensus 350 ~~~r~~~~~ 358 (480)
T PHA02790 350 LKPRCNPAV 358 (480)
T ss_pred CCCCcccEE
Confidence 555543333
No 209
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=23.89 E-value=9.5e+02 Score=26.05 Aligned_cols=197 Identities=13% Similarity=0.082 Sum_probs=0.0
Q ss_pred ecCCceeEEecCCCCeEEEEecCCceEEEecCCCCCccEEecccCCCCCCcEEEEEcCCeEEEEEeCCCCCCCCCceeEE
Q psy92 94 NIAGYQGVFLCGPHPAWLFLTSRGELRAHPMTIDGPVSTLAPFHNVNCPRGFLYFNAKSELRISVLPTHLSYDAPWPVRK 173 (638)
Q Consensus 94 ~~~g~~~Vf~~g~~P~~i~~~~~~~l~~~pl~~~~~v~~~a~F~~~~~~~gfl~~~~~~~L~I~~l~~~~~~~~~~~~r~ 173 (638)
+.+..-.|.-.++...+++-. ...-.+..+...+.+....-|....- ++|+++.+. .|..++. ...-.+++
T Consensus 3 ~~~~l~~V~~~~~~~v~viD~-~t~~~~~~i~~~~~~h~~~~~s~Dgr---~~yv~~rdg-~vsviD~----~~~~~v~~ 73 (369)
T PF02239_consen 3 DTGNLFYVVERGSGSVAVIDG-ATNKVVARIPTGGAPHAGLKFSPDGR---YLYVANRDG-TVSVIDL----ATGKVVAT 73 (369)
T ss_dssp -GGGEEEEEEGGGTEEEEEET-TT-SEEEEEE-STTEEEEEE-TT-SS---EEEEEETTS-EEEEEET----TSSSEEEE
T ss_pred CCccEEEEEecCCCEEEEEEC-CCCeEEEEEcCCCCceeEEEecCCCC---EEEEEcCCC-eEEEEEC----CcccEEEE
Q ss_pred EeCCCcccEEEEecCCCEEEEEEeeecCCCcccccCCccccccCCCCCCCCCCCcccccEEEEEeCCCceeecceeecCC
Q psy92 174 VPLKCTPHFLAYHLETKTYCIVTSTAEPSTDYYKFNGEDKELVTDPRDSRFIPPLVSQFHVSLFSPFSWEEIPQTNFPLH 253 (638)
Q Consensus 174 ipL~~tp~ri~y~~~~~~~~V~~s~~~~~~~~~~~~~e~~e~~~~~~~~~~~~p~~~~~~i~lid~~t~~~i~~~~~~l~ 253 (638)
|+.+..|+.++.++..+.++|++ .....+.++|..+++.+. .+...
T Consensus 74 i~~G~~~~~i~~s~DG~~~~v~n--------------------------------~~~~~v~v~D~~tle~v~--~I~~~ 119 (369)
T PF02239_consen 74 IKVGGNPRGIAVSPDGKYVYVAN--------------------------------YEPGTVSVIDAETLEPVK--TIPTG 119 (369)
T ss_dssp EE-SSEEEEEEE--TTTEEEEEE--------------------------------EETTEEEEEETTT--EEE--EEE--
T ss_pred EecCCCcceEEEcCCCCEEEEEe--------------------------------cCCCceeEecccccccee--ecccc
Q ss_pred ------CceeEeEEEEEEeeccCccCCcccEEEEeecccCCCCcccceeEEEEEEEEeecCCCCccccCceEEEEEEeeC
Q psy92 254 ------EWEHVLCLKNVSMEYEGTLSGLRGYIALGTNYNYSEDVTCRGRILLFDIIEVVPEPGQPLTKNKIKMIYAKEQK 327 (638)
Q Consensus 254 ------~~E~v~si~~v~l~~~~~~~~~~~~ivVGT~~~~~ed~~~~GrI~vf~i~~vvpe~g~~~t~~kLkl~~~~~~~ 327 (638)
..-++.++..... ...|++--- -.|+|.+.++.+ .+-..+...+..
T Consensus 120 ~~~~~~~~~Rv~aIv~s~~--------~~~fVv~lk---------d~~~I~vVdy~d-----------~~~~~~~~i~~g 171 (369)
T PF02239_consen 120 GMPVDGPESRVAAIVASPG--------RPEFVVNLK---------DTGEIWVVDYSD-----------PKNLKVTTIKVG 171 (369)
T ss_dssp EE-TTTS---EEEEEE-SS--------SSEEEEEET---------TTTEEEEEETTT-----------SSCEEEEEEE--
T ss_pred cccccccCCCceeEEecCC--------CCEEEEEEc---------cCCeEEEEEecc-----------ccccceeeeccc
Q ss_pred CceEEE--ccccCeeEEEecC--EEEEEEeeCCceeee
Q psy92 328 GPVTAI--CHVAGFLVTAVGQ--KIYIWQLKDNDLTGI 361 (638)
Q Consensus 328 G~V~al--~~~~g~Ll~avg~--~l~v~~l~~~~L~~~ 361 (638)
...+-. .+-.-++++|..+ +|.+++.+++++...
T Consensus 172 ~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~ 209 (369)
T PF02239_consen 172 RFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVAL 209 (369)
T ss_dssp TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEE
T ss_pred ccccccccCcccceeeecccccceeEEEeeccceEEEE
No 210
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=23.68 E-value=8.5e+02 Score=25.95 Aligned_cols=148 Identities=16% Similarity=0.248 Sum_probs=83.1
Q ss_pred CcccEEEEecCCCEEEEEEeeecCCCcccccCCccccccCCCCCCCCCCCcccccEEEEEeCCCceeecceeecCCCcee
Q psy92 178 CTPHFLAYHLETKTYCIVTSTAEPSTDYYKFNGEDKELVTDPRDSRFIPPLVSQFHVSLFSPFSWEEIPQTNFPLHEWEH 257 (638)
Q Consensus 178 ~tp~ri~y~~~~~~~~V~~s~~~~~~~~~~~~~e~~e~~~~~~~~~~~~p~~~~~~i~lid~~t~~~i~~~~~~l~~~E~ 257 (638)
--||-|..+|..++++|+-.-.... .|.+- ........+.++-++|..+.+.+. ..+|.+.-+
T Consensus 99 IGPHel~l~pDG~tLvVANGGI~Th-------pd~GR--------~kLNl~tM~psL~~ld~~sG~ll~--q~~Lp~~~~ 161 (305)
T PF07433_consen 99 IGPHELLLMPDGETLVVANGGIETH-------PDSGR--------AKLNLDTMQPSLVYLDARSGALLE--QVELPPDLH 161 (305)
T ss_pred cChhhEEEcCCCCEEEEEcCCCccC-------cccCc--------eecChhhcCCceEEEecCCCceee--eeecCcccc
Confidence 3599999999999999875321110 11100 001122456789999999999988 678877667
Q ss_pred EeEEEEEEeeccCccCCcccEEEEeecccCCCCcccceeEEEEEEEEeecCCCCccccCceEEEEE-----EeeCCceEE
Q psy92 258 VLCLKNVSMEYEGTLSGLRGYIALGTNYNYSEDVTCRGRILLFDIIEVVPEPGQPLTKNKIKMIYA-----KEQKGPVTA 332 (638)
Q Consensus 258 v~si~~v~l~~~~~~~~~~~~ivVGT~~~~~ed~~~~GrI~vf~i~~vvpe~g~~~t~~kLkl~~~-----~~~~G~V~a 332 (638)
=+|+.-+.+.. ...+++|--+. ++....-=-+.+++ . + ..++++.. ..+++-+-+
T Consensus 162 ~lSiRHLa~~~-------~G~V~~a~Q~q-g~~~~~~PLva~~~--~-----g-----~~~~~~~~p~~~~~~l~~Y~gS 221 (305)
T PF07433_consen 162 QLSIRHLAVDG-------DGTVAFAMQYQ-GDPGDAPPLVALHR--R-----G-----GALRLLPAPEEQWRRLNGYIGS 221 (305)
T ss_pred ccceeeEEecC-------CCcEEEEEecC-CCCCccCCeEEEEc--C-----C-----CcceeccCChHHHHhhCCceEE
Confidence 77777666643 23444444332 22111111111121 1 1 12333332 235677888
Q ss_pred Ecccc-CeeE-EE--ecCEEEEEEeeCCceeeeE
Q psy92 333 ICHVA-GFLV-TA--VGQKIYIWQLKDNDLTGIA 362 (638)
Q Consensus 333 l~~~~-g~Ll-~a--vg~~l~v~~l~~~~L~~~a 362 (638)
|+--. |.++ ++ -|..+.+|+..+.+|+...
T Consensus 222 Ia~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~ 255 (305)
T PF07433_consen 222 IAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSV 255 (305)
T ss_pred EEEeCCCCEEEEECCCCCEEEEEECCCCCEeecc
Confidence 87543 3344 33 5889999988888776533
No 211
>KOG0321|consensus
Probab=23.60 E-value=1.9e+02 Score=33.63 Aligned_cols=72 Identities=26% Similarity=0.411 Sum_probs=46.5
Q ss_pred cccEEEEeecccCCCCcccceeEEEEEEEEeecCCCCccccCceEEEEEEeeCCceEEEccccC--eeEEEec-CEEEEE
Q psy92 275 LRGYIALGTNYNYSEDVTCRGRILLFDIIEVVPEPGQPLTKNKIKMIYAKEQKGPVTAICHVAG--FLVTAVG-QKIYIW 351 (638)
Q Consensus 275 ~~~~ivVGT~~~~~ed~~~~GrI~vf~i~~vvpe~g~~~t~~kLkl~~~~~~~G~V~al~~~~g--~Ll~avg-~~l~v~ 351 (638)
++..|+|+- -.|.|.+|+....+-++. +..|+ .-...+++|..+....| .||.|.| ++++.|
T Consensus 63 ~eHiLavad---------E~G~i~l~dt~~~~fr~e----e~~lk--~~~aH~nAifDl~wapge~~lVsasGDsT~r~W 127 (720)
T KOG0321|consen 63 KEHILAVAD---------EDGGIILFDTKSIVFRLE----ERQLK--KPLAHKNAIFDLKWAPGESLLVSASGDSTIRPW 127 (720)
T ss_pred ccceEEEec---------CCCceeeecchhhhcchh----hhhhc--ccccccceeEeeccCCCceeEEEccCCceeeee
Confidence 567777775 678888888765321100 11121 11124788999987777 4666665 589999
Q ss_pred EeeCCceeee
Q psy92 352 QLKDNDLTGI 361 (638)
Q Consensus 352 ~l~~~~L~~~ 361 (638)
+++..+|.+.
T Consensus 128 dvk~s~l~G~ 137 (720)
T KOG0321|consen 128 DVKTSRLVGG 137 (720)
T ss_pred eeccceeecc
Confidence 9998887766
No 212
>PF02042 RWP-RK: RWP-RK domain; InterPro: IPR003035 This domain is named RWP-RK after a conserved motif at the C terminus of the domain. The domain is found in algal minus dominance proteins as well as plant proteins involved in nitrogen-controlled development [].
Probab=23.43 E-value=1.8e+02 Score=22.51 Aligned_cols=36 Identities=11% Similarity=0.147 Sum_probs=27.8
Q ss_pred eeehHHHHHHHcCCHHHHHHHHHHhCCCHHHHHHHHHHh
Q psy92 593 IIDGSLVWKFLQLSLGERLEICKKIGSKHNDILDELYDI 631 (638)
Q Consensus 593 ~IDGdlle~fl~L~~~~q~~ia~~lg~~~~~i~~~l~~l 631 (638)
-|.-+-|.+|++|+ +.+.|++||++...+-+...++
T Consensus 4 ~lt~~~L~~~fhlp---~~eAA~~Lgv~~T~LKr~CR~~ 39 (52)
T PF02042_consen 4 SLTLEDLSQYFHLP---IKEAAKELGVSVTTLKRRCRRL 39 (52)
T ss_pred ccCHHHHHHHhCCC---HHHHHHHhCCCHHHHHHHHHHc
Confidence 36678899999999 5688999999987776655443
No 213
>COG4823 AbiF Abortive infection bacteriophage resistance protein [Defense mechanisms]
Probab=23.30 E-value=1.1e+02 Score=31.74 Aligned_cols=46 Identities=22% Similarity=0.365 Sum_probs=38.0
Q ss_pred ceee-hHHHHHHHcCCHHHHHHHHHHhCCCHHHH---HHHHHHhhhccCC
Q psy92 592 GIID-GSLVWKFLQLSLGERLEICKKIGSKHNDI---LDELYDIEALSSH 637 (638)
Q Consensus 592 ~~ID-Gdlle~fl~L~~~~q~~ia~~lg~~~~~i---~~~l~~l~~~~~~ 637 (638)
++.| |++..-|-.|....|..||++.|.+++.+ ++.|..||..+||
T Consensus 163 evwdFg~~sklys~mk~knk~kIakkyg~~~~~f~swl~~inliRNiCAH 212 (299)
T COG4823 163 EVWDFGDISKLYSNLKIKNKKKIAKKYGYDAEYFQSWLHTINLIRNICAH 212 (299)
T ss_pred eeccchhHHHHHHHhhhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhh
Confidence 4455 78888888899999999999999998766 5677778888877
No 214
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=23.12 E-value=4.1e+02 Score=28.38 Aligned_cols=51 Identities=20% Similarity=0.167 Sum_probs=28.4
Q ss_pred ccCeeEEE-ecCEEEEEEeeCCceeeeEEeecceeEEEEeeecCEEEEeecc
Q psy92 336 VAGFLVTA-VGQKIYIWQLKDNDLTGIAFIDTEVYIASMVSVKNLILVGDYA 386 (638)
Q Consensus 336 ~~g~Ll~a-vg~~l~v~~l~~~~L~~~a~~d~~~~i~~i~~~~~~IlvgD~~ 386 (638)
.+++|+++ ....|++++..+.+++-.-......+..+..+.++.|+++...
T Consensus 319 ~g~~l~~~~~~G~l~~~d~~tG~~~~~~~~~~~~~~~sp~~~~~~l~v~~~d 370 (377)
T TIGR03300 319 VGGYLVVGDFEGYLHWLSREDGSFVARLKTDGSGIASPPVVVGDGLLVQTRD 370 (377)
T ss_pred ECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCccccCCEEECCEEEEEeCC
Confidence 45666665 3447888887766655322222222344445667777777553
No 215
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=23.10 E-value=1.2e+03 Score=26.93 Aligned_cols=125 Identities=11% Similarity=0.118 Sum_probs=79.3
Q ss_pred cccEEEEeecccCCCCcccceeEEEEEEEEeecCCCCccccCceEEEEEEe--eCCceEEEc--cccCeeEEE-ecCEEE
Q psy92 275 LRGYIALGTNYNYSEDVTCRGRILLFDIIEVVPEPGQPLTKNKIKMIYAKE--QKGPVTAIC--HVAGFLVTA-VGQKIY 349 (638)
Q Consensus 275 ~~~~ivVGT~~~~~ed~~~~GrI~vf~i~~vvpe~g~~~t~~kLkl~~~~~--~~G~V~al~--~~~g~Ll~a-vg~~l~ 349 (638)
..+...|.-......+ ..=..-+|++.+ .|++-+..+. .+..|.+.+ +-..+|++| +...|.
T Consensus 218 ~~qi~tVE~s~s~~g~--~~~d~ciYE~~r-----------~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSii 284 (545)
T PF11768_consen 218 PYQIHTVEQSISVKGE--PSADSCIYECSR-----------NKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSII 284 (545)
T ss_pred CcEEEEEEEecCCCCC--ceeEEEEEEeec-----------CceeEEEEEEEecCCcceEEecCcccceEEEEecCCeEE
Confidence 3566666665443322 222344566653 4677655444 567777765 344566555 778999
Q ss_pred EEEeeCCceeeeEEeecceeEEEEee--ecCEEEEeeccCcEEEEEEeccCCeEEEEeccCCCcceee
Q psy92 350 IWQLKDNDLTGIAFIDTEVYIASMVS--VKNLILVGDYARSIALLRYQPEYRTLSLVARDYKPTQPNS 415 (638)
Q Consensus 350 v~~l~~~~L~~~a~~d~~~~i~~i~~--~~~~IlvgD~~~Sv~ll~~~~~~~~l~~~arD~~~~~v~~ 415 (638)
+|+...+ +...+ .+.+.++.+.- .+..++||.-.-=+.++----.+-++.+++.|..|..+..
T Consensus 285 LyD~~~~-~t~~~--ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALspi~~qLlsEd~~P~~~L~ 349 (545)
T PF11768_consen 285 LYDTTRG-VTLLA--KAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALSPIKMQLLSEDATPKSTLQ 349 (545)
T ss_pred EEEcCCC-eeeee--eecccceEEEEcCCCcEEEEEcCCceEEEEEeecCccceeeccccCCCccEEe
Confidence 9998743 22212 34455666665 4569999988888888765555678888999999887754
No 216
>COG1522 Lrp Transcriptional regulators [Transcription]
Probab=22.95 E-value=73 Score=29.51 Aligned_cols=41 Identities=15% Similarity=0.243 Sum_probs=34.4
Q ss_pred eehHHHHHHHcCCHHHHHHHHHHhCCCHHHHHHHHHHhhhc
Q psy92 594 IDGSLVWKFLQLSLGERLEICKKIGSKHNDILDELYDIEAL 634 (638)
Q Consensus 594 IDGdlle~fl~L~~~~q~~ia~~lg~~~~~i~~~l~~l~~~ 634 (638)
+|-.+|.....-...-+.+||+++|.|...+.+.+..|+..
T Consensus 9 ~D~~IL~~L~~d~r~~~~eia~~lglS~~~v~~Ri~~L~~~ 49 (154)
T COG1522 9 IDRRILRLLQEDARISNAELAERVGLSPSTVLRRIKRLEEE 49 (154)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHCCCHHHHHHHHHHHHHC
Confidence 56677777777777889999999999999999988888653
No 217
>PRK02889 tolB translocation protein TolB; Provisional
Probab=22.77 E-value=8.3e+02 Score=26.85 Aligned_cols=59 Identities=8% Similarity=0.021 Sum_probs=29.8
Q ss_pred CEEEEEEeeCCceeeeEEeecceeEEEEeeecCEEEE-eeccCcEEEEEEeccCCeEEEE
Q psy92 346 QKIYIWQLKDNDLTGIAFIDTEVYIASMVSVKNLILV-GDYARSIALLRYQPEYRTLSLV 404 (638)
Q Consensus 346 ~~l~v~~l~~~~L~~~a~~d~~~~i~~i~~~~~~Ilv-gD~~~Sv~ll~~~~~~~~l~~~ 404 (638)
..|++|++..++..++.............-.++.|++ .+-.....++.++.....+..+
T Consensus 220 ~~I~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~l 279 (427)
T PRK02889 220 PVVYVHDLATGRRRVVANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSGLRRL 279 (427)
T ss_pred cEEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEEccCCCceEEEEECCCCCcEEC
Confidence 4689999986665554433221111222234566654 3444445566665544444444
No 218
>smart00419 HTH_CRP helix_turn_helix, cAMP Regulatory protein.
Probab=22.55 E-value=1.2e+02 Score=21.67 Aligned_cols=26 Identities=23% Similarity=0.316 Sum_probs=21.8
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHhhhc
Q psy92 609 ERLEICKKIGSKHNDILDELYDIEAL 634 (638)
Q Consensus 609 ~q~~ia~~lg~~~~~i~~~l~~l~~~ 634 (638)
.+.++|+.+|.+...+.+.|..|+..
T Consensus 10 s~~~la~~l~~s~~tv~~~l~~L~~~ 35 (48)
T smart00419 10 TRQEIAELLGLTRETVSRTLKRLEKE 35 (48)
T ss_pred CHHHHHHHHCCCHHHHHHHHHHHHHC
Confidence 47899999999999998888887653
No 219
>PF06971 Put_DNA-bind_N: Putative DNA-binding protein N-terminus; InterPro: IPR009718 This entry represents the C terminus (approximately 30 residues) of a number of Rex proteins. These are redox-sensing repressors that appear to be widespread among Gram-positive bacteria []. They modulate transcription in response to changes in cellular NADH/NAD(+) redox state. Rex is predicted to include a pyridine nucleotide-binding domain (Rossmann fold), and residues that might play key structural and nucleotide binding roles are highly conserved.; GO: 0045892 negative regulation of transcription, DNA-dependent, 0051775 response to redox state, 0005737 cytoplasm; PDB: 3IL2_B 3IKT_A 3IKV_B 1XCB_F 2DT5_A 2VT3_A 2VT2_A 3KEO_B 3KET_A 3KEQ_A ....
Probab=22.49 E-value=91 Score=23.87 Aligned_cols=19 Identities=16% Similarity=0.344 Sum_probs=15.9
Q ss_pred HHHHHHhCCCHHHHHHHHH
Q psy92 611 LEICKKIGSKHNDILDELY 629 (638)
Q Consensus 611 ~~ia~~lg~~~~~i~~~l~ 629 (638)
.++|+.+|.++.+|.+||.
T Consensus 32 ~~La~~~gi~~~qVRKDlS 50 (50)
T PF06971_consen 32 QELAEALGITPAQVRKDLS 50 (50)
T ss_dssp HHHHHHHTS-HHHHHHHHH
T ss_pred HHHHHHHCCCHHHhcccCC
Confidence 5799999999999999973
No 220
>PRK03629 tolB translocation protein TolB; Provisional
Probab=21.53 E-value=1.1e+03 Score=25.93 Aligned_cols=60 Identities=10% Similarity=0.058 Sum_probs=27.6
Q ss_pred CEEEEEEeeCCceeeeEEeecceeEEEEeeecCEEEEe-eccCcEEEEEEeccCCeEEEEe
Q psy92 346 QKIYIWQLKDNDLTGIAFIDTEVYIASMVSVKNLILVG-DYARSIALLRYQPEYRTLSLVA 405 (638)
Q Consensus 346 ~~l~v~~l~~~~L~~~a~~d~~~~i~~i~~~~~~Ilvg-D~~~Sv~ll~~~~~~~~l~~~a 405 (638)
..|+++++..++...+..+..........-.+.+|++. +--....++.++.+..++..+.
T Consensus 223 ~~i~i~dl~~G~~~~l~~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~lt 283 (429)
T PRK03629 223 SALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVT 283 (429)
T ss_pred cEEEEEECCCCCeEEccCCCCCcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEEcc
Confidence 47888888765544333222211112233345666643 3222233444554444444443
No 221
>KOG0271|consensus
Probab=21.37 E-value=1.1e+03 Score=25.96 Aligned_cols=88 Identities=17% Similarity=0.173 Sum_probs=48.9
Q ss_pred CCceEEEc--cccCeeEEEecC-EEEEEEeeCCc-eeeeEEeecceeEEEEe--eecCEEEEeeccCcEEEEEEeccCCe
Q psy92 327 KGPVTAIC--HVAGFLVTAVGQ-KIYIWQLKDND-LTGIAFIDTEVYIASMV--SVKNLILVGDYARSIALLRYQPEYRT 400 (638)
Q Consensus 327 ~G~V~al~--~~~g~Ll~avg~-~l~v~~l~~~~-L~~~a~~d~~~~i~~i~--~~~~~IlvgD~~~Sv~ll~~~~~~~~ 400 (638)
.++|.|+. +-..+|+.+.|. ++++|++..+. +....-+ ...+.++. -.+..|+-|-.--+|-+ |++...+
T Consensus 115 ~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH--~~WVlcvawsPDgk~iASG~~dg~I~l--wdpktg~ 190 (480)
T KOG0271|consen 115 GEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGH--KNWVLCVAWSPDGKKIASGSKDGSIRL--WDPKTGQ 190 (480)
T ss_pred CCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCC--ccEEEEEEECCCcchhhccccCCeEEE--ecCCCCC
Confidence 45676653 222378888886 79999998432 2221111 22344443 45667777766667666 4554433
Q ss_pred EEEEeccCCCcceeeeec
Q psy92 401 LSLVARDYKPTQPNSKGY 418 (638)
Q Consensus 401 l~~~arD~~~~~v~~~~~ 418 (638)
.+--+=--...|++++.+
T Consensus 191 ~~g~~l~gH~K~It~Law 208 (480)
T KOG0271|consen 191 QIGRALRGHKKWITALAW 208 (480)
T ss_pred cccccccCcccceeEEee
Confidence 322222234678888766
No 222
>cd00086 homeodomain Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
Probab=21.22 E-value=2.4e+02 Score=21.07 Aligned_cols=37 Identities=22% Similarity=0.150 Sum_probs=28.8
Q ss_pred HHHHHHHc----CCHHHHHHHHHHhCCCHHHHHHHHHHhhh
Q psy92 597 SLVWKFLQ----LSLGERLEICKKIGSKHNDILDELYDIEA 633 (638)
Q Consensus 597 dlle~fl~----L~~~~q~~ia~~lg~~~~~i~~~l~~l~~ 633 (638)
++|+.++. .+..+..+||+.+|.+..+|.....+-|.
T Consensus 13 ~~Le~~f~~~~~P~~~~~~~la~~~~l~~~qV~~WF~nrR~ 53 (59)
T cd00086 13 EELEKEFEKNPYPSREEREELAKELGLTERQVKIWFQNRRA 53 (59)
T ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 44555544 57888999999999999999888776654
No 223
>KOG4283|consensus
Probab=21.14 E-value=8.5e+02 Score=25.99 Aligned_cols=93 Identities=16% Similarity=0.275 Sum_probs=56.7
Q ss_pred cEEEEEeCCCceeecceeecCCCceeEeEEEEEEeeccCccCCcccEEEEeecccCCCCcccceeEEEEEEEEeecCCCC
Q psy92 232 FHVSLFSPFSWEEIPQTNFPLHEWEHVLCLKNVSMEYEGTLSGLRGYIALGTNYNYSEDVTCRGRILLFDIIEVVPEPGQ 311 (638)
Q Consensus 232 ~~i~lid~~t~~~i~~~~~~l~~~E~v~si~~v~l~~~~~~~~~~~~ivVGT~~~~~ed~~~~GrI~vf~i~~vvpe~g~ 311 (638)
..+++-|-.|.++.+ .|.+++--+-..|.-+.. ...+|++|| ..-.+.+.++.. |
T Consensus 124 htlKVWDtnTlQ~a~--~F~me~~VYshamSp~a~--------sHcLiA~gt---------r~~~VrLCDi~S-----G- 178 (397)
T KOG4283|consen 124 HTLKVWDTNTLQEAV--DFKMEGKVYSHAMSPMAM--------SHCLIAAGT---------RDVQVRLCDIAS-----G- 178 (397)
T ss_pred ceEEEeecccceeeE--EeecCceeehhhcChhhh--------cceEEEEec---------CCCcEEEEeccC-----C-
Confidence 468999988888766 577776433333332222 468999999 334567777754 1
Q ss_pred ccccCceEEEEEEeeCCceEEEc--cccCeeEEEec--CEEEEEEeeC
Q psy92 312 PLTKNKIKMIYAKEQKGPVTAIC--HVAGFLVTAVG--QKIYIWQLKD 355 (638)
Q Consensus 312 ~~t~~kLkl~~~~~~~G~V~al~--~~~g~Ll~avg--~~l~v~~l~~ 355 (638)
...... .-.++.|.|+. +-..++|+.-+ ..|++|++..
T Consensus 179 -----s~sH~L-sGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRr 220 (397)
T KOG4283|consen 179 -----SFSHTL-SGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRR 220 (397)
T ss_pred -----cceeee-ccccCceEEEEeccCceeEEEecCCCceEEEEEeec
Confidence 122111 12456777774 45567766643 4899999873
No 224
>KOG1063|consensus
Probab=21.12 E-value=1.4e+03 Score=27.07 Aligned_cols=187 Identities=14% Similarity=0.197 Sum_probs=0.0
Q ss_pred EEEEEeCCCceeecceeecCCCceeEeEEEEEEeeccCccCCcccEEEEeecccCCCCcccceeEEEEEEEEeecCCCCc
Q psy92 233 HVSLFSPFSWEEIPQTNFPLHEWEHVLCLKNVSMEYEGTLSGLRGYIALGTNYNYSEDVTCRGRILLFDIIEVVPEPGQP 312 (638)
Q Consensus 233 ~i~lid~~t~~~i~~~~~~l~~~E~v~si~~v~l~~~~~~~~~~~~ivVGT~~~~~ed~~~~GrI~vf~i~~vvpe~g~~ 312 (638)
.|.++||.+=.... ...=... .|+|++.+.-.. ...+++.|- +.|++.+|++.+
T Consensus 35 ~Iav~dp~k~~i~t--~l~GH~a-~VnC~~~l~~s~------~~a~~vsG~---------sD~~v~lW~l~~-------- 88 (764)
T KOG1063|consen 35 AIAVADPEKILIVT--TLDGHVA-RVNCVHWLPTSE------IVAEMVSGD---------SDGRVILWKLRD-------- 88 (764)
T ss_pred eEEEeCcccceeEE--eccCCcc-ceEEEEEccccc------ccceEEEcc---------CCCcEEEEEEee--------
Q ss_pred cccCceEEEEEEeeCCceEEEccccCeeEE-EecCEEEEEEeeCCc---eeeeEEeecceeEEEEeeecC----EEEEee
Q psy92 313 LTKNKIKMIYAKEQKGPVTAICHVAGFLVT-AVGQKIYIWQLKDND---LTGIAFIDTEVYIASMVSVKN----LILVGD 384 (638)
Q Consensus 313 ~t~~kLkl~~~~~~~G~V~al~~~~g~Ll~-avg~~l~v~~l~~~~---L~~~a~~d~~~~i~~i~~~~~----~IlvgD 384 (638)
+.-+++.+-.-....|+|+....-..-+ |.-..+++|+-++.+ +....|---..++.++...+| ...+|-
T Consensus 89 --~~~~~i~~~~g~~~~~~cv~a~~~~~~~~~ad~~v~vw~~~~~e~~~~~~~rf~~k~~ipLcL~~~~~~~~~lla~Gg 166 (764)
T KOG1063|consen 89 --EYLIKIYTIQGHCKECVCVVARSSVMTCKAADGTVSVWDKQQDEVFLLAVLRFEIKEAIPLCLAALKNNKTFLLACGG 166 (764)
T ss_pred --hheEEEEeecCcceeEEEEEeeeeEEEeeccCceEEEeecCCCceeeehheehhhhhHhhHHHhhhccCCcEEEEecC
Q ss_pred ccCcEEEEEEeccCCeEEEEec-cCCCcceeeeecccCCCCCcccccccceeeeeeccccccccccccCCcccccccCCC
Q psy92 385 YARSIALLRYQPEYRTLSLVAR-DYKPTQPNSKGYYAGNPSRGIIDGSLVWKFLQLSLGERLEICKKIGSKHNDILDEFS 463 (638)
Q Consensus 385 ~~~Sv~ll~~~~~~~~l~~~ar-D~~~~~v~~~~~l~~~~~~~~vd~~~~~~~~~~~~gd~~~~~~r~~~~~~~~~~~~~ 463 (638)
.-.=|.++... ..++..++. --..-|+-+++|= -- ..+
T Consensus 167 s~~~v~~~s~~--~d~f~~v~el~GH~DWIrsl~f~--------~~-------------------------------~~~ 205 (764)
T KOG1063|consen 167 SKFVVDLYSSS--ADSFARVAELEGHTDWIRSLAFA--------RL-------------------------------GGD 205 (764)
T ss_pred cceEEEEeccC--CcceeEEEEeeccchhhhhhhhh--------cc-------------------------------CCC
Q ss_pred ceeEEEEeCCCcEEEEEeCCCCcCC
Q psy92 464 SMGFMISDKDKNVVLFMYQPEARES 488 (638)
Q Consensus 464 ~l~~l~aD~~~nl~v~~~~~~~~~s 488 (638)
++.+..+-.|..|++.+..+...++
T Consensus 206 ~~~laS~SQD~yIRiW~i~~~~~~~ 230 (764)
T KOG1063|consen 206 DLLLASSSQDRYIRIWRIVLGDDED 230 (764)
T ss_pred cEEEEecCCceEEEEEEEEecCCcc
No 225
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=20.66 E-value=1.1e+03 Score=25.46 Aligned_cols=63 Identities=11% Similarity=0.106 Sum_probs=32.2
Q ss_pred cccCeeEEEe-cCEEEEEEeeCCcee-eeEEeecceeEEEEeeecCEEEEeeccCcEEEEEEeccCCe
Q psy92 335 HVAGFLVTAV-GQKIYIWQLKDNDLT-GIAFIDTEVYIASMVSVKNLILVGDYARSIALLRYQPEYRT 400 (638)
Q Consensus 335 ~~~g~Ll~av-g~~l~v~~l~~~~L~-~~a~~d~~~~i~~i~~~~~~IlvgD~~~Sv~ll~~~~~~~~ 400 (638)
..+|+|+++. ..+++.++..+.+.+ ...... .....+..+.+++|+++|.--.+..+ +....+
T Consensus 292 ~~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~-~~~~~sp~v~~g~l~v~~~~G~l~~l--d~~tG~ 356 (394)
T PRK11138 292 VDGGRIYLVDQNDRVYALDTRGGVELWSQSDLL-HRLLTAPVLYNGYLVVGDSEGYLHWI--NREDGR 356 (394)
T ss_pred EECCEEEEEcCCCeEEEEECCCCcEEEcccccC-CCcccCCEEECCEEEEEeCCCEEEEE--ECCCCC
Confidence 3456666553 446777776654421 100000 11223334568999999876655543 444443
No 226
>KOG0319|consensus
Probab=20.59 E-value=1.3e+03 Score=27.59 Aligned_cols=77 Identities=17% Similarity=0.109 Sum_probs=54.4
Q ss_pred CCceEEEccccCeeEEEecCEEEEEEeeCCce-eeeEEeecceeEEEEeeecCEEEEeeccCcEEEEEEeccCCeEEE
Q psy92 327 KGPVTAICHVAGFLVTAVGQKIYIWQLKDNDL-TGIAFIDTEVYIASMVSVKNLILVGDYARSIALLRYQPEYRTLSL 403 (638)
Q Consensus 327 ~G~V~al~~~~g~Ll~avg~~l~v~~l~~~~L-~~~a~~d~~~~i~~i~~~~~~IlvgD~~~Sv~ll~~~~~~~~l~~ 403 (638)
.|..-+...-+.+|+++.|+.|.+-++...+. .+....+.+-.++.+....|-.++=.+.+|..+-.|+-...+++-
T Consensus 21 tGG~~~~s~nG~~L~t~~~d~Vi~idv~t~~~~l~s~~~ed~d~ita~~l~~d~~~L~~a~rs~llrv~~L~tgk~ir 98 (775)
T KOG0319|consen 21 TGGPVAWSSNGQHLYTACGDRVIIIDVATGSIALPSGSNEDEDEITALALTPDEEVLVTASRSQLLRVWSLPTGKLIR 98 (775)
T ss_pred cCCceeECCCCCEEEEecCceEEEEEccCCceecccCCccchhhhheeeecCCccEEEEeeccceEEEEEcccchHhH
Confidence 44445666656677888899899999887664 555555566677777777777777778888888888765555443
No 227
>KOG0284|consensus
Probab=20.55 E-value=1.2e+03 Score=25.93 Aligned_cols=209 Identities=17% Similarity=0.255 Sum_probs=109.0
Q ss_pred CCeEEEEe-cCCceEEEecCCCCCccEEecccCCC------CC--CcEEEEEcCCeEEEEEeCCCCCCCCCceeEEEe-C
Q psy92 107 HPAWLFLT-SRGELRAHPMTIDGPVSTLAPFHNVN------CP--RGFLYFNAKSELRISVLPTHLSYDAPWPVRKVP-L 176 (638)
Q Consensus 107 ~P~~i~~~-~~~~l~~~pl~~~~~v~~~a~F~~~~------~~--~gfl~~~~~~~L~I~~l~~~~~~~~~~~~r~ip-L 176 (638)
.-.|+.+. ..|.++|...+.+ .|..+-.-+.++ .| .-|+....++.++|=-.-. .-..|.+. =
T Consensus 149 ~g~wmiSgD~gG~iKyWqpnmn-nVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~------~kee~vL~GH 221 (464)
T KOG0284|consen 149 NGTWMISGDKGGMIKYWQPNMN-NVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRM------PKEERVLRGH 221 (464)
T ss_pred CCCEEEEcCCCceEEecccchh-hhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccC------CchhheeccC
Confidence 33466554 4577888777643 233322222111 12 1266666678887743222 12222221 2
Q ss_pred CCcccEEEEecCCCEEEEEEeeecCCCcccccCCccccccCCCCCCCCCCCcccccEEEEEeCCCceeecceeecCCCce
Q psy92 177 KCTPHFLAYHLETKTYCIVTSTAEPSTDYYKFNGEDKELVTDPRDSRFIPPLVSQFHVSLFSPFSWEEIPQTNFPLHEWE 256 (638)
Q Consensus 177 ~~tp~ri~y~~~~~~~~V~~s~~~~~~~~~~~~~e~~e~~~~~~~~~~~~p~~~~~~i~lid~~t~~~i~~~~~~l~~~E 256 (638)
|..++.+.+||+....+.+. + + ..|+|.||.+.+.+. ++. +
T Consensus 222 gwdVksvdWHP~kgLiasgs-k-------------------------------D-nlVKlWDprSg~cl~--tlh----~ 262 (464)
T KOG0284|consen 222 GWDVKSVDWHPTKGLIASGS-K-------------------------------D-NLVKLWDPRSGSCLA--TLH----G 262 (464)
T ss_pred CCCcceeccCCccceeEEcc-C-------------------------------C-ceeEeecCCCcchhh--hhh----h
Confidence 35788899999876665331 1 0 148999999888764 222 2
Q ss_pred eEeEEEEEEeeccCccCCcccEEEEeecccCCCCcccceeEEEEEEEEeecCCCCccccCceEEEE-EEeeCCceEEE--
Q psy92 257 HVLCLKNVSMEYEGTLSGLRGYIALGTNYNYSEDVTCRGRILLFDIIEVVPEPGQPLTKNKIKMIY-AKEQKGPVTAI-- 333 (638)
Q Consensus 257 ~v~si~~v~l~~~~~~~~~~~~ivVGT~~~~~ed~~~~GrI~vf~i~~vvpe~g~~~t~~kLkl~~-~~~~~G~V~al-- 333 (638)
+-.|+..++|.. ..+|++-|. ..-.+.+|||.. +|-+. ....+--|+++
T Consensus 263 HKntVl~~~f~~------n~N~Llt~s---------kD~~~kv~DiR~-------------mkEl~~~r~Hkkdv~~~~W 314 (464)
T KOG0284|consen 263 HKNTVLAVKFNP------NGNWLLTGS---------KDQSCKVFDIRT-------------MKELFTYRGHKKDVTSLTW 314 (464)
T ss_pred ccceEEEEEEcC------CCCeeEEcc---------CCceEEEEehhH-------------hHHHHHhhcchhhheeecc
Confidence 334555666753 248887665 233677888752 12111 11233456666
Q ss_pred ccccCeeEEEecC--EEEEEEee-CCceeeeEE-eecceeEEEEe--eecCEEEEeeccCcEEE
Q psy92 334 CHVAGFLVTAVGQ--KIYIWQLK-DNDLTGIAF-IDTEVYIASMV--SVKNLILVGDYARSIAL 391 (638)
Q Consensus 334 ~~~~g~Ll~avg~--~l~v~~l~-~~~L~~~a~-~d~~~~i~~i~--~~~~~IlvgD~~~Sv~l 391 (638)
.+++.-|++..|. .|+.|.+. .+.+..+.+ .|. .|.++. -+|-.+.-|+--+++-|
T Consensus 315 hP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~AHd~--~iwsl~~hPlGhil~tgsnd~t~rf 376 (464)
T KOG0284|consen 315 HPLNESLFTSGGSDGSVVHWVVGLEEPLGEIPPAHDG--EIWSLAYHPLGHILATGSNDRTVRF 376 (464)
T ss_pred ccccccceeeccCCCceEEEeccccccccCCCccccc--ceeeeeccccceeEeecCCCcceee
Confidence 4677777777665 67778777 333332221 122 233333 23444445555555433
No 228
>KOG1900|consensus
Probab=20.52 E-value=5.1e+02 Score=32.88 Aligned_cols=22 Identities=18% Similarity=0.626 Sum_probs=18.4
Q ss_pred cCeeEEEecCEEEEEEeeC-Cce
Q psy92 337 AGFLVTAVGQKIYIWQLKD-NDL 358 (638)
Q Consensus 337 ~g~Ll~avg~~l~v~~l~~-~~L 358 (638)
=|+..+.++++|++|.+++ +++
T Consensus 90 I~RaWiTiDn~L~lWny~~~~e~ 112 (1311)
T KOG1900|consen 90 IGRAWITIDNNLFLWNYESDNEL 112 (1311)
T ss_pred hcceEEEeCCeEEEEEcCCCCcc
Confidence 3789999999999999985 444
No 229
>PF13545 HTH_Crp_2: Crp-like helix-turn-helix domain; PDB: 3LA2_A 3LA3_B 3LA7_A 3B02_A 3E97_A 2H6C_B 1OMI_A 2BGC_H 2BEO_A 2GAU_A ....
Probab=20.47 E-value=1.3e+02 Score=24.12 Aligned_cols=24 Identities=17% Similarity=0.268 Sum_probs=21.6
Q ss_pred HHHHHHHhCCCHHHHHHHHHHhhh
Q psy92 610 RLEICKKIGSKHNDILDELYDIEA 633 (638)
Q Consensus 610 q~~ia~~lg~~~~~i~~~l~~l~~ 633 (638)
|.+||+.+|++.+.+.+.|..++.
T Consensus 31 ~~~iA~~~g~sr~tv~r~l~~l~~ 54 (76)
T PF13545_consen 31 QEEIADMLGVSRETVSRILKRLKD 54 (76)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH
Confidence 789999999999999998888875
No 230
>PRK05137 tolB translocation protein TolB; Provisional
Probab=20.35 E-value=1.2e+03 Score=25.69 Aligned_cols=79 Identities=5% Similarity=0.013 Sum_probs=38.2
Q ss_pred CCceEEEc-cccC-eeEEEe----cCEEEEEEeeCCceeeeEEeecceeEEEEeeecCEEEE-eeccCcEEEEEEeccCC
Q psy92 327 KGPVTAIC-HVAG-FLVTAV----GQKIYIWQLKDNDLTGIAFIDTEVYIASMVSVKNLILV-GDYARSIALLRYQPEYR 399 (638)
Q Consensus 327 ~G~V~al~-~~~g-~Ll~av----g~~l~v~~l~~~~L~~~a~~d~~~~i~~i~~~~~~Ilv-gD~~~Sv~ll~~~~~~~ 399 (638)
.+++.+.. .-+| +|+... ...|++|++..++...+.............-.++.|++ .+.-....++.++.+..
T Consensus 201 ~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~ 280 (435)
T PRK05137 201 SSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSG 280 (435)
T ss_pred CCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEeecCCCcccCcEECCCCCEEEEEEecCCCceEEEEECCCC
Confidence 44565553 1234 455443 25789999876654444433322222223344566553 33333444555555544
Q ss_pred eEEEEe
Q psy92 400 TLSLVA 405 (638)
Q Consensus 400 ~l~~~a 405 (638)
.+..+.
T Consensus 281 ~~~~Lt 286 (435)
T PRK05137 281 TTTRLT 286 (435)
T ss_pred ceEEcc
Confidence 444443
No 231
>PF13730 HTH_36: Helix-turn-helix domain
Probab=20.05 E-value=1.4e+02 Score=22.45 Aligned_cols=25 Identities=12% Similarity=0.320 Sum_probs=21.9
Q ss_pred HHHHHHHhCCCHHHHHHHHHHhhhc
Q psy92 610 RLEICKKIGSKHNDILDELYDIEAL 634 (638)
Q Consensus 610 q~~ia~~lg~~~~~i~~~l~~l~~~ 634 (638)
+..||+.+|.+...|.+.|.+|+..
T Consensus 28 ~~~la~~~g~s~~Tv~~~i~~L~~~ 52 (55)
T PF13730_consen 28 QETLAKDLGVSRRTVQRAIKELEEK 52 (55)
T ss_pred HHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 7899999999999999988888753
No 232
>KOG0974|consensus
Probab=20.03 E-value=1.4e+03 Score=28.29 Aligned_cols=85 Identities=20% Similarity=0.376 Sum_probs=54.1
Q ss_pred cCCCceeEeEEEEEEeeccCccCCcccEEEEeecccCCCCcccceeEEEEEEEEeecCCCCccccCceEEEEEEeeCCce
Q psy92 251 PLHEWEHVLCLKNVSMEYEGTLSGLRGYIALGTNYNYSEDVTCRGRILLFDIIEVVPEPGQPLTKNKIKMIYAKEQKGPV 330 (638)
Q Consensus 251 ~l~~~E~v~si~~v~l~~~~~~~~~~~~ivVGT~~~~~ed~~~~GrI~vf~i~~vvpe~g~~~t~~kLkl~~~~~~~G~V 330 (638)
+..-+|.++....+-...+ ...-|++-|| .-|.|++|+..++ ++| . .-.-.+|.+
T Consensus 124 ~i~~~er~~l~~~~~~g~s----~~~~~i~~gs---------v~~~iivW~~~~d----n~p---~-----~l~GHeG~i 178 (967)
T KOG0974|consen 124 KIQSDERCTLYSSLIIGDS----AEELYIASGS---------VFGEIIVWKPHED----NKP---I-----RLKGHEGSI 178 (967)
T ss_pred hcCCCceEEEEeEEEEecc----CcEEEEEecc---------ccccEEEEecccc----CCc---c-----eecccCCce
Confidence 4445666655544433332 2568888888 6779999988742 222 1 334567888
Q ss_pred EEEc-cccCeeEEEec--CEEEEEEeeCCceee
Q psy92 331 TAIC-HVAGFLVTAVG--QKIYIWQLKDNDLTG 360 (638)
Q Consensus 331 ~al~-~~~g~Ll~avg--~~l~v~~l~~~~L~~ 360 (638)
.++. ..+|+.++.+- ..+++|.+++.+..+
T Consensus 179 F~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~ 211 (967)
T KOG0974|consen 179 FSIVTSLDGRYIASVSDDRSIRLWPIDSREVLG 211 (967)
T ss_pred EEEEEccCCcEEEEEecCcceeeeecccccccC
Confidence 8886 45676666654 489999999765433
Done!