Query psy92
Match_columns 638
No_of_seqs 226 out of 633
Neff 7.1
Searched_HMMs 29240
Date Fri Aug 16 21:26:42 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy92.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/92hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ei3_A DNA damage-binding prot 100.0 1.7E-83 5.8E-88 778.1 61.2 525 12-634 601-1157(1158)
2 3zwl_B Eukaryotic translation 98.3 0.0017 5.9E-08 66.0 32.9 179 145-389 89-283 (369)
3 1gxr_A ESG1, transducin-like e 98.0 0.0063 2.2E-07 61.0 29.5 261 145-544 65-334 (337)
4 1gxr_A ESG1, transducin-like e 98.0 0.019 6.6E-07 57.4 33.7 197 146-419 113-315 (337)
5 3i2n_A WD repeat-containing pr 97.7 0.035 1.2E-06 56.1 29.7 147 276-483 129-291 (357)
6 1r5m_A SIR4-interacting protei 97.6 0.084 2.9E-06 54.4 31.8 140 277-483 218-361 (425)
7 3jrp_A Fusion protein of prote 97.6 0.086 2.9E-06 53.5 29.8 192 276-545 69-285 (379)
8 3gre_A Serine/threonine-protei 97.5 0.05 1.7E-06 57.3 28.4 147 146-358 186-362 (437)
9 1yfq_A Cell cycle arrest prote 97.5 0.03 1E-06 56.4 25.5 187 149-397 30-226 (342)
10 4aez_A CDC20, WD repeat-contai 97.5 0.14 4.7E-06 53.6 32.8 266 143-549 104-382 (401)
11 1pgu_A Actin interacting prote 97.4 0.21 7.3E-06 54.5 34.5 156 323-544 442-611 (615)
12 1sq9_A Antiviral protein SKI8; 97.4 0.1 3.5E-06 53.8 28.3 107 276-394 137-265 (397)
13 3mmy_A MRNA export factor; mRN 97.4 0.069 2.4E-06 53.9 26.0 146 276-484 98-248 (368)
14 3lrv_A PRE-mRNA-splicing facto 97.4 0.072 2.5E-06 54.5 26.3 196 145-403 88-299 (343)
15 3gre_A Serine/threonine-protei 97.4 0.043 1.5E-06 57.8 25.2 198 146-394 80-290 (437)
16 2vdu_B TRNA (guanine-N(7)-)-me 97.3 0.042 1.4E-06 58.7 24.9 103 276-395 161-270 (450)
17 1ri6_A Putative isomerase YBHE 97.3 0.18 6.1E-06 50.4 33.7 256 145-513 51-332 (343)
18 4aez_A CDC20, WD repeat-contai 97.3 0.042 1.4E-06 57.6 23.5 152 232-419 113-268 (401)
19 3k26_A Polycomb protein EED; W 97.2 0.051 1.7E-06 55.0 23.0 232 149-481 92-364 (366)
20 3vl1_A 26S proteasome regulato 97.2 0.16 5.4E-06 52.8 27.4 218 233-547 120-365 (420)
21 3mkq_A Coatomer beta'-subunit; 97.2 0.18 6.2E-06 57.6 30.1 152 178-395 14-171 (814)
22 2ynn_A Coatomer subunit beta'; 97.2 0.22 7.4E-06 50.0 29.3 216 233-545 36-257 (304)
23 2ovr_B FBW7, F-BOX/WD repeat p 97.2 0.32 1.1E-05 51.4 36.2 206 232-539 219-430 (445)
24 3i2n_A WD repeat-containing pr 97.2 0.25 8.7E-06 49.6 30.4 99 276-396 180-291 (357)
25 2ovr_B FBW7, F-BOX/WD repeat p 97.1 0.29 1E-05 51.7 28.8 150 232-418 259-415 (445)
26 1k8k_C P40, ARP2/3 complex 41 97.1 0.19 6.6E-06 50.9 26.1 145 276-482 20-172 (372)
27 1yfq_A Cell cycle arrest prote 97.1 0.032 1.1E-06 56.2 19.8 144 276-484 68-226 (342)
28 1r5m_A SIR4-interacting protei 97.1 0.34 1.2E-05 49.8 29.0 131 232-396 227-361 (425)
29 3f3f_A Nucleoporin SEH1; struc 97.1 0.26 8.8E-06 48.7 26.1 153 276-483 71-249 (351)
30 3jrp_A Fusion protein of prote 97.1 0.26 9E-06 49.8 26.5 205 276-547 23-240 (379)
31 1got_B GT-beta; complex (GTP-b 97.0 0.37 1.3E-05 49.2 27.8 171 293-542 162-338 (340)
32 1vyh_C Platelet-activating fac 97.0 0.47 1.6E-05 50.0 28.6 255 149-543 127-407 (410)
33 3v7d_B Cell division control p 97.0 0.48 1.6E-05 50.1 31.1 231 146-483 136-381 (464)
34 4gqb_B Methylosome protein 50; 97.0 0.29 1E-05 50.6 26.5 203 145-419 96-308 (344)
35 1k8k_C P40, ARP2/3 complex 41 97.0 0.37 1.3E-05 48.8 26.6 99 276-394 64-171 (372)
36 1erj_A Transcriptional repress 96.9 0.5 1.7E-05 49.3 28.4 141 276-483 135-287 (393)
37 2vdu_B TRNA (guanine-N(7)-)-me 96.9 0.32 1.1E-05 51.7 26.8 123 276-418 210-362 (450)
38 1l0q_A Surface layer protein; 96.9 0.48 1.6E-05 48.7 34.2 190 151-418 11-207 (391)
39 4ery_A WD repeat-containing pr 96.9 0.41 1.4E-05 47.7 27.6 97 276-394 77-178 (312)
40 3mkq_A Coatomer beta'-subunit; 96.9 0.53 1.8E-05 53.6 29.9 196 150-419 33-237 (814)
41 4g56_B MGC81050 protein; prote 96.9 0.16 5.4E-06 52.7 23.3 181 276-544 151-340 (357)
42 1p22_A F-BOX/WD-repeat protein 96.7 0.76 2.6E-05 48.4 28.2 97 276-395 266-364 (435)
43 1p22_A F-BOX/WD-repeat protein 96.7 0.78 2.7E-05 48.3 31.1 216 233-545 194-412 (435)
44 3jro_A Fusion protein of prote 96.7 0.31 1E-05 56.2 25.8 147 276-483 67-238 (753)
45 3ow8_A WD repeat-containing pr 96.7 0.67 2.3E-05 47.0 27.7 193 150-419 100-299 (321)
46 1got_B GT-beta; complex (GTP-b 96.7 0.69 2.4E-05 47.1 26.2 214 233-545 78-299 (340)
47 3odt_A Protein DOA1; ubiquitin 96.7 0.54 1.8E-05 46.1 24.3 140 276-484 155-297 (313)
48 3vl1_A 26S proteasome regulato 96.6 0.85 2.9E-05 47.1 31.2 102 275-396 258-365 (420)
49 1l0q_A Surface layer protein; 96.6 0.83 2.8E-05 46.8 32.7 179 145-400 45-235 (391)
50 1pby_B Quinohemoprotein amine 96.6 0.6 2E-05 46.3 24.1 147 150-359 9-167 (337)
51 4ery_A WD repeat-containing pr 96.5 0.74 2.5E-05 45.8 29.9 130 233-395 88-222 (312)
52 3mmy_A MRNA export factor; mRN 96.5 0.57 1.9E-05 47.0 23.8 98 277-395 55-159 (368)
53 3sfz_A APAF-1, apoptotic pepti 96.5 2.4 8.2E-05 51.0 33.7 153 233-419 724-891 (1249)
54 4a11_B DNA excision repair pro 96.5 0.67 2.3E-05 47.3 24.5 98 276-396 112-218 (408)
55 3v7d_B Cell division control p 96.5 1.2 3.9E-05 47.1 32.9 150 232-418 290-441 (464)
56 4gqb_B Methylosome protein 50; 96.4 0.18 6.1E-06 52.2 19.8 119 276-419 139-266 (344)
57 3iz6_a 40S ribosomal protein R 96.4 0.38 1.3E-05 50.0 22.4 145 276-483 218-375 (380)
58 1ri6_A Putative isomerase YBHE 96.4 0.87 3E-05 45.2 31.1 187 144-396 5-209 (343)
59 3bws_A Protein LP49; two-domai 96.4 1.1 3.9E-05 46.5 35.1 199 151-419 190-409 (433)
60 2xyi_A Probable histone-bindin 96.3 0.16 5.3E-06 54.0 18.9 114 276-396 67-213 (430)
61 1sq9_A Antiviral protein SKI8; 96.3 1.2 4.1E-05 45.5 29.7 94 278-394 199-320 (397)
62 4h5i_A Guanine nucleotide-exch 96.3 1.1 3.9E-05 46.2 25.0 196 180-483 136-343 (365)
63 1pgu_A Actin interacting prote 96.3 1.6 5.3E-05 47.5 27.3 126 276-419 78-215 (615)
64 4g56_B MGC81050 protein; prote 96.2 0.19 6.4E-06 52.1 18.3 228 144-484 107-344 (357)
65 2xyi_A Probable histone-bindin 96.2 0.36 1.2E-05 51.1 20.9 198 277-545 195-408 (430)
66 2pm9_A Protein WEB1, protein t 96.2 0.54 1.8E-05 48.4 21.7 142 276-484 178-338 (416)
67 3vu4_A KMHSV2; beta-propeller 96.1 1.5 5E-05 45.1 25.9 84 294-395 80-167 (355)
68 3ei3_B DNA damage-binding prot 96.1 0.49 1.7E-05 48.5 21.2 185 277-544 87-279 (383)
69 3ei3_B DNA damage-binding prot 96.1 0.15 5.3E-06 52.4 17.3 173 234-483 98-282 (383)
70 3sfz_A APAF-1, apoptotic pepti 96.1 2.4 8.2E-05 51.0 30.1 259 149-544 634-910 (1249)
71 1vyh_C Platelet-activating fac 96.1 1.7 5.9E-05 45.5 28.4 244 99-419 112-389 (410)
72 3zwl_B Eukaryotic translation 96.1 1.4 4.6E-05 44.1 33.5 163 233-419 97-268 (369)
73 3fm0_A Protein CIAO1; WDR39,SG 96.1 1.5 5.2E-05 44.6 24.4 188 276-545 28-223 (345)
74 2ymu_A WD-40 repeat protein; u 96.1 2.1 7.3E-05 46.3 32.9 116 276-419 438-558 (577)
75 2ynn_A Coatomer subunit beta'; 96.0 1.4 4.7E-05 44.0 30.4 217 150-482 33-258 (304)
76 4a11_B DNA excision repair pro 96.0 0.33 1.1E-05 49.6 19.0 146 276-483 56-218 (408)
77 2aq5_A Coronin-1A; WD40 repeat 96.0 0.94 3.2E-05 47.0 22.8 179 149-395 151-341 (402)
78 3k26_A Polycomb protein EED; W 95.9 0.32 1.1E-05 48.9 18.3 144 276-483 34-192 (366)
79 3bws_A Protein LP49; two-domai 95.9 1.9 6.5E-05 44.7 27.8 183 145-394 225-430 (433)
80 3fm0_A Protein CIAO1; WDR39,SG 95.9 1.7 5.9E-05 44.2 34.7 199 276-549 117-337 (345)
81 1nr0_A Actin interacting prote 95.9 2.9 0.0001 46.4 33.8 123 276-419 460-590 (611)
82 3odt_A Protein DOA1; ubiquitin 95.8 1.6 5.4E-05 42.7 26.7 97 276-393 29-130 (313)
83 1jmx_B Amine dehydrogenase; ox 95.8 1.5 5E-05 43.7 22.3 152 150-358 19-178 (349)
84 3jro_A Fusion protein of prote 95.7 0.67 2.3E-05 53.3 22.0 147 276-483 113-285 (753)
85 2ymu_A WD-40 repeat protein; u 95.7 2.9 0.0001 45.1 39.8 174 276-542 397-575 (577)
86 3lrv_A PRE-mRNA-splicing facto 95.6 1.6 5.4E-05 44.2 22.3 131 233-393 105-241 (343)
87 2pbi_B Guanine nucleotide-bind 95.5 2.6 9E-05 43.1 30.9 153 232-419 176-335 (354)
88 4e54_B DNA damage-binding prot 95.5 0.079 2.7E-06 56.3 11.9 121 276-419 132-259 (435)
89 2oaj_A Protein SNI1; WD40 repe 95.4 1.2 4.1E-05 52.6 23.0 95 276-394 29-127 (902)
90 3dm0_A Maltose-binding peripla 95.4 4.6 0.00016 45.3 29.1 93 276-392 531-628 (694)
91 3dsm_A Uncharacterized protein 95.4 2.4 8.2E-05 43.1 22.5 161 169-401 75-256 (328)
92 3ow8_A WD repeat-containing pr 95.3 2.7 9.3E-05 42.4 29.1 210 232-543 102-317 (321)
93 1erj_A Transcriptional repress 95.3 3.2 0.00011 43.0 27.5 191 145-396 180-389 (393)
94 3vu4_A KMHSV2; beta-propeller 95.3 3 0.0001 42.7 23.5 169 233-483 82-271 (355)
95 2aq5_A Coronin-1A; WD40 repeat 95.2 2.2 7.7E-05 44.0 21.9 208 149-419 101-322 (402)
96 2pm9_A Protein WEB1, protein t 95.1 0.063 2.1E-06 55.7 9.3 110 276-395 25-144 (416)
97 3f3f_A Nucleoporin SEH1; struc 95.0 2.9 9.9E-05 40.9 24.1 103 276-396 23-143 (351)
98 3dwl_C Actin-related protein 2 95.0 0.23 8E-06 50.8 13.5 144 276-482 23-176 (377)
99 3dm0_A Maltose-binding peripla 95.0 1.4 4.7E-05 49.8 20.9 148 276-482 395-549 (694)
100 4gga_A P55CDC, cell division c 94.9 3.4 0.00012 43.1 22.7 129 232-395 125-260 (420)
101 3vgz_A Uncharacterized protein 94.9 2.7 9.2E-05 41.9 21.0 168 171-402 34-219 (353)
102 3hfq_A Uncharacterized protein 94.8 3.7 0.00013 41.2 30.5 102 293-404 106-226 (347)
103 3dw8_B Serine/threonine-protei 94.7 2 7E-05 44.5 20.2 85 252-356 25-127 (447)
104 3ei3_A DNA damage-binding prot 94.6 11 0.00038 45.7 33.1 160 320-545 819-997 (1158)
105 4e54_B DNA damage-binding prot 94.6 0.22 7.6E-06 52.8 12.3 144 276-483 177-327 (435)
106 2hes_X YDR267CP; beta-propelle 94.5 4.4 0.00015 40.8 33.6 190 276-543 119-324 (330)
107 3dsm_A Uncharacterized protein 94.2 5.3 0.00018 40.4 23.5 195 142-402 93-306 (328)
108 2oaj_A Protein SNI1; WD40 repe 94.2 3.6 0.00012 48.4 22.7 145 176-389 16-176 (902)
109 1q7f_A NHL, brain tumor CG1071 94.1 4.7 0.00016 39.2 24.2 90 329-418 165-258 (286)
110 3hfq_A Uncharacterized protein 94.1 5.5 0.00019 39.9 31.8 115 293-418 160-293 (347)
111 4gga_A P55CDC, cell division c 94.1 6.6 0.00023 40.9 27.1 144 276-483 242-395 (420)
112 3dwl_C Actin-related protein 2 94.0 0.3 1E-05 49.9 11.5 101 276-395 67-176 (377)
113 2xzm_R RACK1; ribosome, transl 94.0 5.8 0.0002 40.0 24.2 127 276-419 39-171 (343)
114 2pbi_B Guanine nucleotide-bind 94.0 6.1 0.00021 40.3 26.9 179 276-542 166-352 (354)
115 2pm7_B Protein transport prote 93.8 5.8 0.0002 39.2 25.4 148 276-483 67-238 (297)
116 3bg1_A Protein SEC13 homolog; 93.6 6.4 0.00022 39.3 20.7 101 276-396 25-136 (316)
117 3scy_A Hypothetical bacterial 93.6 6.8 0.00023 39.6 27.1 90 329-418 212-313 (361)
118 4aow_A Guanine nucleotide-bind 93.5 6.3 0.00021 38.8 23.7 126 276-419 51-180 (340)
119 3u4y_A Uncharacterized protein 93.5 6.4 0.00022 38.9 25.0 131 232-396 20-160 (331)
120 3vgz_A Uncharacterized protein 93.5 6.6 0.00023 39.0 31.1 173 168-401 79-265 (353)
121 4h5i_A Guanine nucleotide-exch 93.4 8 0.00027 39.7 23.0 201 276-560 145-361 (365)
122 2hes_X YDR267CP; beta-propelle 93.3 7.3 0.00025 39.1 24.0 198 276-545 70-278 (330)
123 4aow_A Guanine nucleotide-bind 93.3 6.8 0.00023 38.5 29.8 131 293-482 193-336 (340)
124 3frx_A Guanine nucleotide-bind 93.1 7.7 0.00026 38.7 29.3 94 277-395 167-266 (319)
125 2xzm_R RACK1; ribosome, transl 92.4 10 0.00035 38.2 25.7 129 233-394 99-242 (343)
126 3dw8_B Serine/threonine-protei 91.9 13 0.00044 38.3 24.9 104 277-395 240-372 (447)
127 3u4y_A Uncharacterized protein 91.8 11 0.00037 37.2 30.0 193 145-404 53-258 (331)
128 1nr0_A Actin interacting prote 91.7 19 0.00064 39.7 36.0 154 326-542 447-606 (611)
129 4ggc_A P55CDC, cell division c 91.6 11 0.00036 36.7 32.4 143 142-357 35-183 (318)
130 3iz6_a 40S ribosomal protein R 91.1 15 0.00051 37.6 22.3 181 233-483 89-280 (380)
131 2iwa_A Glutamine cyclotransfer 90.3 16 0.00054 36.5 23.3 163 170-400 11-183 (266)
132 1pby_B Quinohemoprotein amine 89.9 15 0.00052 35.8 26.3 49 142-196 43-100 (337)
133 3scy_A Hypothetical bacterial 89.4 19 0.00065 36.1 33.8 116 293-419 231-360 (361)
134 2pm7_B Protein transport prote 89.0 18 0.00062 35.4 26.9 147 276-483 113-285 (297)
135 3g4e_A Regucalcin; six bladed 88.5 12 0.00041 37.0 16.1 80 325-405 51-145 (297)
136 1jmx_B Amine dehydrogenase; ox 87.5 20 0.0007 35.1 17.2 47 145-197 56-111 (349)
137 2j04_B YDR362CP, TAU91; beta p 87.2 11 0.00039 41.2 16.3 109 276-394 225-340 (524)
138 2ojh_A Uncharacterized protein 87.0 5.8 0.0002 37.7 12.3 100 293-405 20-126 (297)
139 2hqs_A Protein TOLB; TOLB, PAL 86.8 32 0.0011 35.8 23.8 89 326-419 265-362 (415)
140 2vpj_A Kelch-like protein 12; 85.7 23 0.00079 34.7 16.4 87 332-418 154-251 (301)
141 2oit_A Nucleoporin 214KDA; NH2 85.5 13 0.00044 39.4 15.2 58 276-354 162-222 (434)
142 1xip_A Nucleoporin NUP159; bet 85.4 14 0.00049 39.0 15.1 60 332-395 44-112 (388)
143 1jof_A Carboxy-CIS,CIS-muconat 85.0 35 0.0012 34.5 24.3 98 294-402 166-296 (365)
144 2j04_A TAU60, YPL007P, hypothe 83.4 15 0.00051 41.1 14.7 56 293-359 200-258 (588)
145 4ggc_A P55CDC, cell division c 83.3 34 0.0011 32.9 28.3 146 276-483 162-315 (318)
146 2j04_B YDR362CP, TAU91; beta p 83.2 5.9 0.0002 43.5 11.4 120 277-419 278-406 (524)
147 2j04_A TAU60, YPL007P, hypothe 82.6 23 0.0008 39.5 15.8 124 276-418 141-273 (588)
148 1nir_A Nitrite reductase; hemo 81.8 64 0.0022 35.1 29.6 194 142-403 147-360 (543)
149 2hqs_A Protein TOLB; TOLB, PAL 80.1 25 0.00084 36.7 14.6 109 294-419 158-275 (415)
150 3mbr_X Glutamine cyclotransfer 78.0 55 0.0019 32.1 18.5 134 231-401 42-182 (243)
151 2dg1_A DRP35, lactonase; beta 77.6 36 0.0012 33.5 14.3 107 277-404 57-177 (333)
152 3bg1_A Protein SEC13 homolog; 77.1 39 0.0013 33.3 14.4 70 325-394 11-88 (316)
153 3ii7_A Kelch-like protein 7; p 77.0 45 0.0016 32.7 14.8 85 332-416 96-196 (306)
154 2oit_A Nucleoporin 214KDA; NH2 76.7 78 0.0027 33.2 18.7 92 325-419 90-201 (434)
155 2ghs_A AGR_C_1268P; regucalcin 76.3 65 0.0022 32.1 16.5 104 276-404 61-174 (326)
156 1q7f_A NHL, brain tumor CG1071 75.6 58 0.002 31.1 20.7 69 328-396 207-280 (286)
157 4a2l_A BT_4663, two-component 75.5 40 0.0014 38.4 15.7 72 330-404 133-208 (795)
158 3mbr_X Glutamine cyclotransfer 75.3 54 0.0019 32.2 14.4 83 317-400 8-96 (243)
159 3ii7_A Kelch-like protein 7; p 74.3 22 0.00074 35.1 11.6 88 332-419 195-293 (306)
160 3nol_A Glutamine cyclotransfer 74.3 72 0.0025 31.7 21.6 165 170-403 33-206 (262)
161 1zgk_A Kelch-like ECH-associat 73.6 23 0.00078 35.1 11.5 85 332-416 116-211 (308)
162 2xn4_A Kelch-like protein 2; s 72.7 62 0.0021 31.5 14.5 85 332-416 150-247 (302)
163 2vpj_A Kelch-like protein 12; 72.4 31 0.0011 33.8 12.1 85 332-416 201-296 (301)
164 1jof_A Carboxy-CIS,CIS-muconat 71.5 88 0.003 31.4 22.9 69 277-361 3-76 (365)
165 3v9f_A Two-component system se 70.6 50 0.0017 37.5 14.9 77 327-405 449-531 (781)
166 4asc_A Kelch repeat and BTB do 70.6 43 0.0015 33.1 12.8 87 332-418 93-194 (315)
167 1zgk_A Kelch-like ECH-associat 70.2 32 0.0011 34.0 11.7 85 332-416 210-305 (308)
168 2xn4_A Kelch-like protein 2; s 70.0 56 0.0019 31.9 13.4 87 332-418 103-202 (302)
169 3frx_A Guanine nucleotide-bind 68.1 95 0.0032 30.4 29.1 129 232-394 176-315 (319)
170 3nol_A Glutamine cyclotransfer 66.1 60 0.0021 32.2 12.4 68 331-399 46-117 (262)
171 2woz_A Kelch repeat and BTB do 65.4 1E+02 0.0035 30.3 14.4 85 334-418 155-251 (318)
172 3q7m_A Lipoprotein YFGL, BAMB; 65.2 1.2E+02 0.004 30.4 21.4 60 337-401 239-299 (376)
173 2uvk_A YJHT; unknown function, 64.8 85 0.0029 31.4 13.9 66 346-411 168-241 (357)
174 3nok_A Glutaminyl cyclase; bet 64.3 58 0.002 32.5 11.9 82 318-401 43-128 (268)
175 1nir_A Nitrite reductase; hemo 63.7 1.7E+02 0.0057 31.7 28.2 150 145-360 192-360 (543)
176 3nok_A Glutaminyl cyclase; bet 62.5 1.3E+02 0.0044 30.0 20.9 130 234-401 77-213 (268)
177 3v9f_A Two-component system se 60.8 1.9E+02 0.0064 32.7 17.1 76 328-405 115-199 (781)
178 2ojh_A Uncharacterized protein 59.7 1.1E+02 0.0038 28.4 20.2 45 145-196 55-103 (297)
179 4gq1_A NUP37; propeller, trans 58.5 1.6E+02 0.0055 29.8 20.8 95 345-483 110-218 (393)
180 4asc_A Kelch repeat and BTB do 57.3 1.5E+02 0.005 29.0 20.0 87 332-418 143-241 (315)
181 3no2_A Uncharacterized protein 57.0 1.5E+02 0.005 28.9 21.4 107 275-404 4-114 (276)
182 3q7m_A Lipoprotein YFGL, BAMB; 52.4 1.9E+02 0.0065 28.8 14.9 100 277-401 240-340 (376)
183 2fp8_A Strictosidine synthase; 51.8 1.7E+02 0.006 28.5 13.4 77 329-405 81-181 (322)
184 1dul_A Signal recognition part 51.7 17 0.00058 28.7 4.3 28 606-633 34-61 (69)
185 1rwi_B Serine/threonine-protei 50.0 1.6E+02 0.0055 27.3 18.5 69 329-399 151-223 (270)
186 2woz_A Kelch repeat and BTB do 49.6 96 0.0033 30.5 10.9 87 332-418 104-204 (318)
187 3sjl_D Methylamine dehydrogena 49.0 2.5E+02 0.0086 29.3 24.5 62 156-254 111-180 (386)
188 3no2_A Uncharacterized protein 48.7 2E+02 0.0067 27.9 25.5 46 142-193 4-52 (276)
189 4a2l_A BT_4663, two-component 48.2 3.4E+02 0.012 30.5 18.4 75 330-406 175-252 (795)
190 2z3z_A Dipeptidyl aminopeptida 47.8 1.8E+02 0.0063 31.9 14.0 48 295-355 101-150 (706)
191 3o4h_A Acylamino-acid-releasin 47.4 2.3E+02 0.0079 30.2 14.5 65 336-402 159-231 (582)
192 3e5z_A Putative gluconolactona 47.1 79 0.0027 30.4 9.7 92 293-401 191-289 (296)
193 3hxj_A Pyrrolo-quinoline quino 45.2 2.1E+02 0.0073 27.4 14.8 59 330-392 139-200 (330)
194 3e5z_A Putative gluconolactona 45.1 2.1E+02 0.0072 27.2 16.3 107 276-406 40-169 (296)
195 1hq1_A Signal recognition part 40.5 29 0.00099 29.7 4.4 29 606-634 68-96 (105)
196 2uvk_A YJHT; unknown function, 40.3 1.1E+02 0.0039 30.4 9.9 82 332-413 60-192 (357)
197 3hxj_A Pyrrolo-quinoline quino 39.8 2.6E+02 0.0088 26.8 15.5 70 329-403 178-249 (330)
198 4gq1_A NUP37; propeller, trans 39.0 3.1E+02 0.01 27.6 13.1 101 276-394 101-216 (393)
199 3ott_A Two-component system se 38.5 4.5E+02 0.016 29.2 20.7 74 328-404 103-180 (758)
200 3fvz_A Peptidyl-glycine alpha- 36.7 2.4E+02 0.0082 27.6 11.6 58 347-405 70-130 (329)
201 2jqe_A SRP54, signal recogniti 36.1 35 0.0012 29.8 4.3 29 606-634 77-105 (119)
202 2z2n_A Virginiamycin B lyase; 34.7 2.9E+02 0.0098 25.8 28.8 264 142-545 24-293 (299)
203 1sfu_A 34L protein; protein/Z- 34.5 33 0.0011 27.5 3.5 33 602-634 21-56 (75)
204 2oiz_A Aromatic amine dehydrog 34.2 3.7E+02 0.013 26.9 23.5 70 331-406 259-342 (361)
205 3fvz_A Peptidyl-glycine alpha- 33.1 3.5E+02 0.012 26.3 22.7 66 328-393 241-319 (329)
206 2qc5_A Streptogramin B lactona 32.7 3.1E+02 0.011 25.5 27.1 72 329-403 189-264 (300)
207 2z3z_A Dipeptidyl aminopeptida 32.6 5.1E+02 0.018 28.1 30.8 226 142-405 130-398 (706)
208 2ece_A 462AA long hypothetical 32.0 4.6E+02 0.016 28.1 13.2 154 273-483 92-289 (462)
209 1qb2_A SRP54, human signal rec 29.4 42 0.0014 28.9 3.6 29 606-634 74-102 (109)
210 1qgp_A Protein (double strande 29.1 21 0.0007 28.5 1.5 39 595-633 16-57 (77)
211 3pe7_A Oligogalacturonate lyas 29.0 4.2E+02 0.014 25.9 14.4 17 346-362 168-184 (388)
212 1z68_A Fibroblast activation p 27.9 5.9E+02 0.02 27.7 14.0 18 180-197 62-79 (719)
213 2iwa_A Glutamine cyclotransfer 27.4 4.5E+02 0.015 25.7 17.3 83 317-400 8-97 (266)
214 1qbj_A Protein (double-strande 26.6 26 0.0009 28.3 1.7 40 594-633 11-53 (81)
215 3hrp_A Uncharacterized protein 26.2 3.8E+02 0.013 27.5 11.3 61 336-397 140-202 (409)
216 1mfq_C SRP54, signal recogniti 25.8 52 0.0018 29.1 3.6 28 606-633 87-114 (129)
217 2w18_A PALB2, fancn, partner a 25.4 5.7E+02 0.02 26.3 18.3 159 261-482 159-356 (356)
218 1xn7_A Hypothetical protein YH 25.4 46 0.0016 26.6 3.0 28 606-633 15-42 (78)
219 1xmk_A Double-stranded RNA-spe 25.3 29 0.00098 28.0 1.7 37 597-633 15-52 (79)
220 1xip_A Nucleoporin NUP159; bet 25.1 5.9E+02 0.02 26.3 15.1 69 324-395 85-154 (388)
221 1qks_A Cytochrome CD1 nitrite 24.6 7E+02 0.024 27.0 23.5 198 97-361 166-379 (567)
222 3k2a_A Homeobox protein MEIS2; 24.3 1.3E+02 0.0045 22.9 5.4 37 597-633 11-54 (67)
223 2jt1_A PEFI protein; solution 22.9 66 0.0023 25.6 3.4 25 609-633 26-50 (77)
224 1mda_H Methylamine dehydrogena 21.8 2.7E+02 0.0093 28.6 9.0 68 155-252 47-114 (368)
225 2qc5_A Streptogramin B lactona 21.0 5E+02 0.017 24.0 27.9 73 328-403 146-222 (300)
226 3ott_A Two-component system se 20.9 8.7E+02 0.03 26.8 17.4 73 328-404 63-136 (758)
227 3tc9_A Hypothetical hydrolase; 20.9 7E+02 0.024 25.7 14.5 41 377-418 237-277 (430)
228 2k02_A Ferrous iron transport 20.8 59 0.002 26.7 2.8 29 606-634 15-43 (87)
229 1x2m_A LAG1 longevity assuranc 20.4 1.8E+02 0.0062 22.3 5.3 37 593-629 9-50 (64)
No 1
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=100.00 E-value=1.7e-83 Score=778.05 Aligned_cols=525 Identities=21% Similarity=0.355 Sum_probs=441.7
Q ss_pred CCccceEEEeeecccCCCCceEEEEEECCcEEEEEEEecCCCCceeeEEEeccccccccCCccCCCCCCCCcceeeeEEE
Q psy92 12 MDETIVQELLTVSLGLHGNRPLLLVRTQHELLIYQAFRHPKGALKLRFKKLKVLFVSDRSKRANEQPGLPRGVRISQMRY 91 (638)
Q Consensus 12 ~~~~~~~eil~~~lg~~~~~p~L~~~~~~~l~~Y~~~~~~~~~~~~rf~kv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 91 (638)
+++..|++|+++.++ +.|||++.++|+.++|..+....|.+..+ |+.. +|++|..|++
T Consensus 601 ~~~~~p~si~l~~~~---~~~~L~igl~dG~l~~~~~d~~tg~l~d~-r~~~------------------LG~~pv~L~~ 658 (1158)
T 3ei3_A 601 GGEIIPRSILMTTFE---SSHYLLCALGDGALFYFGLNIETGLLSDR-KKVT------------------LGTQPTVLRT 658 (1158)
T ss_dssp CSSCCEEEEEEEEET---TEEEEEEEETTSEEEEEEECTTTCCEEEE-EEEE------------------CCSSCCEEEE
T ss_pred CCCCCCcEEEEEEeC---CCcEEEEEeCCCeEEEEEEcCCCCccccc-eeEE------------------cCCCceEEEE
Confidence 345689999999994 67999999999888888886656666555 4432 6788999999
Q ss_pred eeecCCceeEEecCCCCeEEEEecCCceEEEecCCCCCccEEecccCCCCCCcEEEEEcCCeEEEEEeCCCCCCCCCcee
Q psy92 92 FSNIAGYQGVFLCGPHPAWLFLTSRGELRAHPMTIDGPVSTLAPFHNVNCPRGFLYFNAKSELRISVLPTHLSYDAPWPV 171 (638)
Q Consensus 92 f~~~~g~~~Vf~~g~~P~~i~~~~~~~l~~~pl~~~~~v~~~a~F~~~~~~~gfl~~~~~~~L~I~~l~~~~~~~~~~~~ 171 (638)
|.+. |..+||+||++|.|++++ ++++.++|++. .++.++|||++++||+|++++ ++++|+|+++++.+ +|++
T Consensus 659 ~~~~-~~~~V~a~s~rp~liy~~-~~~l~~s~l~~-~~v~~~~~F~se~~~~g~v~~-~~~~LrI~~i~~~~----~~~~ 730 (1158)
T 3ei3_A 659 FRSL-STTNVFACSDRPTVIYSS-NHKLVFSNVNL-KEVNYMCPLNSDGYPDSLALA-NNSTLTIGTIDEIQ----KLHI 730 (1158)
T ss_dssp EESS-SCEEEEEESSSCEEEEES-SSSEEEEEBSS-SCCCEEEEECCSSSTTEEEEE-CSSCEEEEEECCSS----SEEE
T ss_pred EeeC-CceeEEEECCCCEEEEEc-CCceEEeccCh-HHhceEeccCcccCCCcEEEE-cCCceEEEEecccC----CeeE
Confidence 9976 458999999999666555 69999999986 479999999999999999987 67889999999853 7999
Q ss_pred EEEeCCCcccEEEEecCCCEEEEEEeeecCCCcccccCCccc---------c--------ccCCCCCCCCCCCcccccEE
Q psy92 172 RKVPLKCTPHFLAYHLETKTYCIVTSTAEPSTDYYKFNGEDK---------E--------LVTDPRDSRFIPPLVSQFHV 234 (638)
Q Consensus 172 r~ipL~~tp~ri~y~~~~~~~~V~~s~~~~~~~~~~~~~e~~---------e--------~~~~~~~~~~~~p~~~~~~i 234 (638)
|+|||++|||||+|||++++|+|++++.+++........+.. . .....++..++ +...++++
T Consensus 731 ~~ipL~~Tprri~y~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~s~i 809 (1158)
T 3ei3_A 731 RTVPLYESPRKICYQEVSQCFGVLSSRIEVQDTSGGTTALRPSASTQALSSSVSSSKLFSSSTAPHETSFG-EEVEVHNL 809 (1158)
T ss_dssp EEEECSSEEEEEEEEGGGTEEEEEEEEEEEECSSSSEEESSCCHHHHCSEEEECCCCCC----------CC-CEEEEEEE
T ss_pred EEEeCCCCceEEEEcCCCCEEEEEEEeccccccccccchhhhhhhhhhhhhcccccccccccccCchhhcC-CceeeEEE
Confidence 999999999999999999999999998764321000000000 0 00001122232 23568999
Q ss_pred EEEeCCCceeecceeecCCCceeEeEEEEEEeeccCccCCcccEEEEeecccCC-CCcccceeEEEEEEEEeecCCCCcc
Q psy92 235 SLFSPFSWEEIPQTNFPLHEWEHVLCLKNVSMEYEGTLSGLRGYIALGTNYNYS-EDVTCRGRILLFDIIEVVPEPGQPL 313 (638)
Q Consensus 235 ~lid~~t~~~i~~~~~~l~~~E~v~si~~v~l~~~~~~~~~~~~ivVGT~~~~~-ed~~~~GrI~vf~i~~vvpe~g~~~ 313 (638)
+++||.+|++++ .++|+++|+++|++.|+|.++ +++||||||++..+ |+.+++|||++|+++
T Consensus 810 ~lidp~t~~~i~--~~~l~~nE~~~sv~~v~~~~~-----~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~---------- 872 (1158)
T 3ei3_A 810 LIIDQHTFEVLH--AHQFLQNEYALSLVSCKLGKD-----PNTYFIVGTAMVYPEEAEPKQGRIVVFQYS---------- 872 (1158)
T ss_dssp EEEETTTCCEEE--EEECCTTEEEEEEEEECCTTC-----CCCEEEEEEEECCTTCSSCCCEEEEEEEEE----------
T ss_pred EEEeCCCCeEEE--EEeCCCCcceEEEEEEEEccC-----CCEEEEEEeeecCCCCCCCCceEEEEEEEE----------
Confidence 999999999998 899999999999999999642 47999999999985 678999999999997
Q ss_pred ccCceEEEEEEeeCCceEEEccccCeeEEEecCEEEEEEeeCCceeeeEEeeccee----EEEEeeecCEEEEeeccCcE
Q psy92 314 TKNKIKMIYAKEQKGPVTAICHVAGFLVTAVGQKIYIWQLKDNDLTGIAFIDTEVY----IASMVSVKNLILVGDYARSI 389 (638)
Q Consensus 314 t~~kLkl~~~~~~~G~V~al~~~~g~Ll~avg~~l~v~~l~~~~L~~~a~~d~~~~----i~~i~~~~~~IlvgD~~~Sv 389 (638)
++||+++|+++++|+|+|||+|+|+|++|+|++|++|+|+++++++ .++..| ++++++.+|+|+|||+++||
T Consensus 873 -~~kL~lv~~~~v~g~v~al~~~~g~Lla~ig~~l~vy~l~~~~~L~---~~~~~~~~i~~~~l~~~~~~I~vgD~~~Sv 948 (1158)
T 3ei3_A 873 -DGKLQTVAEKEVKGAVYSMVEFNGKLLASINSTVRLYEWTTEKELR---TECNHYNNIMALYLKTKGDFILVGDLMRSV 948 (1158)
T ss_dssp -TTEEEEEEEEEESSCEEEEEEETTEEEEEETTEEEEEEECTTSCEE---EEEEECCCSCEEEEEEETTEEEEEESSBCE
T ss_pred -CCEEEEEEEEEcCCcCEEEeeeCCEEEEEcCCEEEEEECCCCceEE---EEeeccccEEEEEEeccCCEEEEEEhhheE
Confidence 2599999999999999999999999999999999999999776544 233333 66888999999999999999
Q ss_pred EEEEEeccCCeEEEEeccCCCcceeeeecccCCCCCcccccccceeeeeeccccccccccccCCcccccccCCCceeEEE
Q psy92 390 ALLRYQPEYRTLSLVARDYKPTQPNSKGYYAGNPSRGIIDGSLVWKFLQLSLGERLEICKKIGSKHNDILDEFSSMGFMI 469 (638)
Q Consensus 390 ~ll~~~~~~~~l~~~arD~~~~~v~~~~~l~~~~~~~~vd~~~~~~~~~~~~gd~~~~~~r~~~~~~~~~~~~~~l~~l~ 469 (638)
+|++|++++++|+++|||+.++|+++++|| | ++ .+++
T Consensus 949 ~~~~y~~~~~~L~~~a~D~~~~~vta~~~l---------d-------------------------------~~---t~l~ 985 (1158)
T 3ei3_A 949 LLLAYKPMEGNFEEIARDFNPNWMSAVEIL---------D-------------------------------DD---NFLG 985 (1158)
T ss_dssp EEEEEETTTTEEEEEEECCSCBCEEEEEEE---------E-------------------------------TT---EEEE
T ss_pred EEEEEEcCCCeEEEEEeecccccEEEEEEE---------c-------------------------------cC---cEEE
Confidence 999999999999999999999999999997 5 15 5999
Q ss_pred EeCCCcEEEEEeCCCCcCCCCCceEEEEeeeecCcceeeEEEEeccCCCCCCCCCCCCceEEEEEeCCCcEEEEEeCChh
Q psy92 470 SDKDKNVVLFMYQPEARESNGGHRLIKKTDFHLGQHVNTFFKIRCKPSSISDAPGARSRFLTWYASLDGALGFFLPLPEK 549 (638)
Q Consensus 470 aD~~~nl~v~~~~~~~~~s~~~~~L~~~~~f~lg~~v~~~~~~~~~~~~~~~~~~~~~~~~il~~t~~GsIg~l~pl~~~ 549 (638)
+|++|||++++++|+++++.+++||+.+++||+|+.||+|+++++.+....+. ....++.++|+|++|+||+++|++++
T Consensus 986 aD~~gNl~vl~~~~~~~~~~~~~~L~~~~~fhlG~~vt~~~~~sl~~~~~~~~-~~~~~~~il~~T~~GsIg~l~pl~~~ 1064 (1158)
T 3ei3_A 986 AENAFNLFVCQKDSAATTDEERQHLQEVGLFHLGEFVNVFCHGSLVMQNLGET-STPTQGSVLFGTVNGMIGLVTSLSES 1064 (1158)
T ss_dssp EETTSEEEEEEECTTCCSTTGGGBEEEEEEEECSSCEEEEEECCSCCC--------CEEEEEEEEETTSCEEEEEEECHH
T ss_pred EcCCCcEEEEecCCCCCCccccceeeeEEEEeCCCcEeeEEeeeeecCCCccc-cccccceEEEEecCCEEEEEEEcCHH
Confidence 99999999999999988888899999999999999999999987654321111 12346789999999999999999999
Q ss_pred hHHHHHHHHHHHHhccCCCCCCCccccccccCCCcccCCCCcceeehHHHHHHHcCCHHHHHHHHHHhC----------C
Q psy92 550 NYRRLLMLQNVMVTHTSHTGGLNPRAFRTYKGKGYYAGNPSRGIIDGSLVWKFLQLSLGERLEICKKIG----------S 619 (638)
Q Consensus 550 ~~~~L~~Lq~~l~~~~~~~~gl~p~~~R~~~~~~~~~~~p~~~~IDGdlle~fl~L~~~~q~~ia~~lg----------~ 619 (638)
.|++|..||++|++.++++||+||++||+++++.+ ..|+++||||||||+|++|+.++|++||+++| +
T Consensus 1065 ~~~~L~~Lq~~l~~~~~~~~gl~~~~~Rs~~~~~~--~~~~~~~iDGdLle~fl~L~~~~q~~ia~~l~~~~~~~~~~~~ 1142 (1158)
T 3ei3_A 1065 WYNLLLDMQNRLNKVIKSVGKIEHSFWRSFHTERK--TEPATGFIDGDLIESFLDISRPKMQEVVANLQYDDGSGMKREA 1142 (1158)
T ss_dssp HHHHHHHHHHHHHHHSCCTTSCCHHHHHSEECSSC--EECCBSEEEHHHHHGGGGSCHHHHHHHCCCC------------
T ss_pred HHHHHHHHHHHHHhhCCCCcCCCHHHhhCeecccc--cCCCCccCcHHHHHHHHcCCHHHHHHHHHhhCccccccccCCC
Confidence 99999999999999999999999999999988754 35789999999999999999999999999996 6
Q ss_pred CHHHHHHHHHHhhhc
Q psy92 620 KHNDILDELYDIEAL 634 (638)
Q Consensus 620 ~~~~i~~~l~~l~~~ 634 (638)
+++||.++||||+|+
T Consensus 1143 t~~ei~k~~e~l~r~ 1157 (1158)
T 3ei3_A 1143 TADDLIKVVEELTRI 1157 (1158)
T ss_dssp CCHHHHHHHHHHGGG
T ss_pred CHHHHHHHHHHHhhc
Confidence 999999999999986
No 2
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=98.31 E-value=0.0017 Score=66.01 Aligned_cols=179 Identities=9% Similarity=0.074 Sum_probs=97.9
Q ss_pred EEEEEcCCeEEEEEeCCCCCCCCCceeEEEeCCCcccEEEEecCCCEEEEEEeeecCCCcccccCCccccccCCCCCCCC
Q psy92 145 FLYFNAKSELRISVLPTHLSYDAPWPVRKVPLKCTPHFLAYHLETKTYCIVTSTAEPSTDYYKFNGEDKELVTDPRDSRF 224 (638)
Q Consensus 145 fl~~~~~~~L~I~~l~~~~~~~~~~~~r~ipL~~tp~ri~y~~~~~~~~V~~s~~~~~~~~~~~~~e~~e~~~~~~~~~~ 224 (638)
++....++.+++-.+.. .-.+++++....+..++++|..+.+++++.....
T Consensus 89 l~s~~~dg~i~iwd~~~------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~----------------------- 139 (369)
T 3zwl_B 89 CVTGSADYSIKLWDVSN------GQCVATWKSPVPVKRVEFSPCGNYFLAILDNVMK----------------------- 139 (369)
T ss_dssp EEEEETTTEEEEEETTT------CCEEEEEECSSCEEEEEECTTSSEEEEEECCBTT-----------------------
T ss_pred EEEEeCCCeEEEEECCC------CcEEEEeecCCCeEEEEEccCCCEEEEecCCccC-----------------------
Confidence 34444577888887765 3456777788889999999998877765532100
Q ss_pred CCCcccccEEEEEeCCCc-----------eeecceeec-CCCceeEeEEEEEEeeccCccCCcccEEEEeecccCCCCcc
Q psy92 225 IPPLVSQFHVSLFSPFSW-----------EEIPQTNFP-LHEWEHVLCLKNVSMEYEGTLSGLRGYIALGTNYNYSEDVT 292 (638)
Q Consensus 225 ~~p~~~~~~i~lid~~t~-----------~~i~~~~~~-l~~~E~v~si~~v~l~~~~~~~~~~~~ivVGT~~~~~ed~~ 292 (638)
..+.++++|..+. +.+. .+. ......+.++ .+.. ...++++|+
T Consensus 140 -----~~g~i~~~d~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~---~~~~------~~~~l~~~~--------- 194 (369)
T 3zwl_B 140 -----NPGSINIYEIERDSATHELTKVSEEPIH--KIITHEGLDAATVA---GWST------KGKYIIAGH--------- 194 (369)
T ss_dssp -----BCCEEEEEEEEECTTTCCEEEECSSCSE--EEECCTTCCCEEEE---EECG------GGCEEEEEE---------
T ss_pred -----CCCEEEEEEecCCccceeecccccceee--eccCCcCccceeEE---EEcC------CCCEEEEEc---------
Confidence 0011222221100 0000 111 1111234443 3332 246888887
Q ss_pred cceeEEEEEEEEeecCCCCccccCceEEEEEE-eeCCceEEEccc-cCe-eEEEe-cCEEEEEEeeCCceeeeEEeecce
Q psy92 293 CRGRILLFDIIEVVPEPGQPLTKNKIKMIYAK-EQKGPVTAICHV-AGF-LVTAV-GQKIYIWQLKDNDLTGIAFIDTEV 368 (638)
Q Consensus 293 ~~GrI~vf~i~~vvpe~g~~~t~~kLkl~~~~-~~~G~V~al~~~-~g~-Ll~av-g~~l~v~~l~~~~L~~~a~~d~~~ 368 (638)
..|.|.+|++.. ..+.+... ...++|++++-- +|. |+++. ...|++|++...++...-....+.
T Consensus 195 ~dg~i~i~d~~~------------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~ 262 (369)
T 3zwl_B 195 KDGKISKYDVSN------------NYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYETDCPL 262 (369)
T ss_dssp TTSEEEEEETTT------------TTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSCE
T ss_pred CCCEEEEEECCC------------CcEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCceeeeecCCCCc
Confidence 678999998632 12222222 357889988632 444 44443 458999999876654433223333
Q ss_pred eEEEEeeecCEEEEeeccCcE
Q psy92 369 YIASMVSVKNLILVGDYARSI 389 (638)
Q Consensus 369 ~i~~i~~~~~~IlvgD~~~Sv 389 (638)
........+.++++|....+.
T Consensus 263 ~~~~~~~~~~~l~~~~~~~~~ 283 (369)
T 3zwl_B 263 NTAVITPLKEFIILGGGQEAK 283 (369)
T ss_dssp EEEEECSSSSEEEEEECCC--
T ss_pred eeEEecCCCceEEEeecCCCc
Confidence 333334457889998877754
No 3
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=98.01 E-value=0.0063 Score=61.02 Aligned_cols=261 Identities=11% Similarity=0.014 Sum_probs=146.5
Q ss_pred EEEEEcCCeEEEEEeCCCCCCCCCceeEEEe---CCCcccEEEEecCCCEEEEEEeeecCCCcccccCCccccccCCCCC
Q psy92 145 FLYFNAKSELRISVLPTHLSYDAPWPVRKVP---LKCTPHFLAYHLETKTYCIVTSTAEPSTDYYKFNGEDKELVTDPRD 221 (638)
Q Consensus 145 fl~~~~~~~L~I~~l~~~~~~~~~~~~r~ip---L~~tp~ri~y~~~~~~~~V~~s~~~~~~~~~~~~~e~~e~~~~~~~ 221 (638)
+++...++.+++-.+..... ......++ -...+..++++|..+.++++...
T Consensus 65 ~l~~~~dg~i~iw~~~~~~~---~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----------------------- 118 (337)
T 1gxr_A 65 HVYTGGKGCVKVWDISHPGN---KSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEA----------------------- 118 (337)
T ss_dssp EEEEECBSEEEEEETTSTTC---CSCSEEEECSCTTSBEEEEEECTTSSEEEEEESS-----------------------
T ss_pred EEEEcCCCeEEEEECCCCCc---eeeeecccccCCCCcEEEEEEcCCCCEEEEEcCC-----------------------
Confidence 45555677888877765321 22333333 34567888999887766654311
Q ss_pred CCCCCCcccccEEEEEeCCCceeecceeecCCCceeEeEEEEEEeeccCccCCcccEEEEeecccCCCCcccceeEEEEE
Q psy92 222 SRFIPPLVSQFHVSLFSPFSWEEIPQTNFPLHEWEHVLCLKNVSMEYEGTLSGLRGYIALGTNYNYSEDVTCRGRILLFD 301 (638)
Q Consensus 222 ~~~~~p~~~~~~i~lid~~t~~~i~~~~~~l~~~E~v~si~~v~l~~~~~~~~~~~~ivVGT~~~~~ed~~~~GrI~vf~ 301 (638)
..++++|..+.+......+.-. ...+.++ .+.. ...++++|+ ..|.|.+|+
T Consensus 119 ----------~~i~~~d~~~~~~~~~~~~~~~-~~~i~~~---~~~~------~~~~l~~~~---------~dg~v~~~d 169 (337)
T 1gxr_A 119 ----------STLSIWDLAAPTPRIKAELTSS-APACYAL---AISP------DSKVCFSCC---------SDGNIAVWD 169 (337)
T ss_dssp ----------SEEEEEECCCC--EEEEEEECS-SSCEEEE---EECT------TSSEEEEEE---------TTSCEEEEE
T ss_pred ----------CcEEEEECCCCCcceeeecccC-CCceEEE---EECC------CCCEEEEEe---------CCCcEEEEe
Confidence 2355555544331110012211 2234443 3332 246888887 578999998
Q ss_pred EEEeecCCCCccccCceEEEEEE-eeCCceEEEccc-cC-eeEEEe-cCEEEEEEeeCCceeeeEEeecceeEEEEee--
Q psy92 302 IIEVVPEPGQPLTKNKIKMIYAK-EQKGPVTAICHV-AG-FLVTAV-GQKIYIWQLKDNDLTGIAFIDTEVYIASMVS-- 375 (638)
Q Consensus 302 i~~vvpe~g~~~t~~kLkl~~~~-~~~G~V~al~~~-~g-~Ll~av-g~~l~v~~l~~~~L~~~a~~d~~~~i~~i~~-- 375 (638)
+.. . +.+... ...++|++++-- +| +|+++. ...|++|++...+.... +.....+.++..
T Consensus 170 ~~~-----------~--~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~--~~~~~~v~~~~~s~ 234 (337)
T 1gxr_A 170 LHN-----------Q--TLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQ--HDFTSQIFSLGYCP 234 (337)
T ss_dssp TTT-----------T--EEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEE--EECSSCEEEEEECT
T ss_pred CCC-----------C--ceeeeeecccCceEEEEECCCCCEEEEEecCCcEEEEECCCCceEee--ecCCCceEEEEECC
Confidence 632 1 222222 257889888643 44 444443 45899999986654433 234445555554
Q ss_pred ecCEEEEeeccCcEEEEEEeccCCeEEEEeccCCCcceeeeecccCCCCCcccccccceeeeeeccccccccccccCCcc
Q psy92 376 VKNLILVGDYARSIALLRYQPEYRTLSLVARDYKPTQPNSKGYYAGNPSRGIIDGSLVWKFLQLSLGERLEICKKIGSKH 455 (638)
Q Consensus 376 ~~~~IlvgD~~~Sv~ll~~~~~~~~l~~~arD~~~~~v~~~~~l~~~~~~~~vd~~~~~~~~~~~~gd~~~~~~r~~~~~ 455 (638)
.++++++|..-..+.++..+. .+...+. .....++++.|- .|
T Consensus 235 ~~~~l~~~~~~~~i~~~~~~~--~~~~~~~--~~~~~v~~~~~~--------~~-------------------------- 276 (337)
T 1gxr_A 235 TGEWLAVGMESSNVEVLHVNK--PDKYQLH--LHESCVLSLKFA--------YC-------------------------- 276 (337)
T ss_dssp TSSEEEEEETTSCEEEEETTS--SCEEEEC--CCSSCEEEEEEC--------TT--------------------------
T ss_pred CCCEEEEEcCCCcEEEEECCC--CCeEEEc--CCccceeEEEEC--------CC--------------------------
Confidence 467999998888887765533 3333222 234457777674 33
Q ss_pred cccccCCCceeEEEEeCCCcEEEEEeCCCCcCCCCCceEEEEeeeecCcceeeEEEEeccCCCCCCCCCCCCceEEEEEe
Q psy92 456 NDILDEFSSMGFMISDKDKNVVLFMYQPEARESNGGHRLIKKTDFHLGQHVNTFFKIRCKPSSISDAPGARSRFLTWYAS 535 (638)
Q Consensus 456 ~~~~~~~~~l~~l~aD~~~nl~v~~~~~~~~~s~~~~~L~~~~~f~lg~~v~~~~~~~~~~~~~~~~~~~~~~~~il~~t 535 (638)
+. .++++..++.+.++..... ..+ .....+..|+.+.-.+ ....++.++
T Consensus 277 ------~~--~l~~~~~dg~i~~~~~~~~-------~~~---~~~~~~~~v~~~~~s~-------------~~~~l~~~~ 325 (337)
T 1gxr_A 277 ------GK--WFVSTGKDNLLNAWRTPYG-------ASI---FQSKESSSVLSCDISV-------------DDKYIVTGS 325 (337)
T ss_dssp ------SS--EEEEEETTSEEEEEETTTC-------CEE---EEEECSSCEEEEEECT-------------TSCEEEEEE
T ss_pred ------CC--EEEEecCCCcEEEEECCCC-------eEE---EEecCCCcEEEEEECC-------------CCCEEEEec
Confidence 33 4778888999999976542 222 2233355566553211 234678889
Q ss_pred CCCcEEEEE
Q psy92 536 LDGALGFFL 544 (638)
Q Consensus 536 ~~GsIg~l~ 544 (638)
.+|.|.+.-
T Consensus 326 ~dg~i~iw~ 334 (337)
T 1gxr_A 326 GDKKATVYE 334 (337)
T ss_dssp TTSCEEEEE
T ss_pred CCCeEEEEE
Confidence 999987653
No 4
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=97.97 E-value=0.019 Score=57.37 Aligned_cols=197 Identities=12% Similarity=0.089 Sum_probs=112.1
Q ss_pred EEEEcCCeEEEEEeCCCCCCCCCceeEEEeCC-CcccEEEEecCCCEEEEEEeeecCCCcccccCCccccccCCCCCCCC
Q psy92 146 LYFNAKSELRISVLPTHLSYDAPWPVRKVPLK-CTPHFLAYHLETKTYCIVTSTAEPSTDYYKFNGEDKELVTDPRDSRF 224 (638)
Q Consensus 146 l~~~~~~~L~I~~l~~~~~~~~~~~~r~ipL~-~tp~ri~y~~~~~~~~V~~s~~~~~~~~~~~~~e~~e~~~~~~~~~~ 224 (638)
+....++.+++-.+.... ......+.-. ..+..++++|..+.+++++.
T Consensus 113 ~~~~~d~~i~~~d~~~~~----~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~--------------------------- 161 (337)
T 1gxr_A 113 IVGGEASTLSIWDLAAPT----PRIKAELTSSAPACYALAISPDSKVCFSCCS--------------------------- 161 (337)
T ss_dssp EEEESSSEEEEEECCCC------EEEEEEECSSSCEEEEEECTTSSEEEEEET---------------------------
T ss_pred EEEcCCCcEEEEECCCCC----cceeeecccCCCceEEEEECCCCCEEEEEeC---------------------------
Confidence 333356788888776521 1233333332 34677888887666654431
Q ss_pred CCCcccccEEEEEeCCCceeecceeecCCCceeEeEEEEEEeeccCccCCcccEEEEeecccCCCCcccceeEEEEEEEE
Q psy92 225 IPPLVSQFHVSLFSPFSWEEIPQTNFPLHEWEHVLCLKNVSMEYEGTLSGLRGYIALGTNYNYSEDVTCRGRILLFDIIE 304 (638)
Q Consensus 225 ~~p~~~~~~i~lid~~t~~~i~~~~~~l~~~E~v~si~~v~l~~~~~~~~~~~~ivVGT~~~~~ed~~~~GrI~vf~i~~ 304 (638)
...++++|..+.+.+. .+.-. ...+.++ .+.. ...++++|+ ..|.|++|++..
T Consensus 162 ------dg~v~~~d~~~~~~~~--~~~~~-~~~i~~~---~~~~------~~~~l~~~~---------~dg~i~~~d~~~ 214 (337)
T 1gxr_A 162 ------DGNIAVWDLHNQTLVR--QFQGH-TDGASCI---DISN------DGTKLWTGG---------LDNTVRSWDLRE 214 (337)
T ss_dssp ------TSCEEEEETTTTEEEE--EECCC-SSCEEEE---EECT------TSSEEEEEE---------TTSEEEEEETTT
T ss_pred ------CCcEEEEeCCCCceee--eeecc-cCceEEE---EECC------CCCEEEEEe---------cCCcEEEEECCC
Confidence 1236677766666543 33322 2234444 3332 246888887 578999998632
Q ss_pred eecCCCCccccCceEEEEEEeeCCceEEEcc-ccC-eeEEEe-cCEEEEEEeeCCceeeeEEeecceeEEEEeee--cCE
Q psy92 305 VVPEPGQPLTKNKIKMIYAKEQKGPVTAICH-VAG-FLVTAV-GQKIYIWQLKDNDLTGIAFIDTEVYIASMVSV--KNL 379 (638)
Q Consensus 305 vvpe~g~~~t~~kLkl~~~~~~~G~V~al~~-~~g-~Ll~av-g~~l~v~~l~~~~L~~~a~~d~~~~i~~i~~~--~~~ 379 (638)
.+.+......+++++++- -+| .|+++. ..+|++|++...+... +......+.++... +++
T Consensus 215 -------------~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~ 279 (337)
T 1gxr_A 215 -------------GRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQ--LHLHESCVLSLKFAYCGKW 279 (337)
T ss_dssp -------------TEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEE--ECCCSSCEEEEEECTTSSE
T ss_pred -------------CceEeeecCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeEE--EcCCccceeEEEECCCCCE
Confidence 233444567888998863 234 455443 4689999998766432 22334456666654 678
Q ss_pred EEEeeccCcEEEEEEeccCCeEEEEeccCCCcceeeeecc
Q psy92 380 ILVGDYARSIALLRYQPEYRTLSLVARDYKPTQPNSKGYY 419 (638)
Q Consensus 380 IlvgD~~~Sv~ll~~~~~~~~l~~~arD~~~~~v~~~~~l 419 (638)
+++|..-..+.++... ..+..... .....++++.+-
T Consensus 280 l~~~~~dg~i~~~~~~--~~~~~~~~--~~~~~v~~~~~s 315 (337)
T 1gxr_A 280 FVSTGKDNLLNAWRTP--YGASIFQS--KESSSVLSCDIS 315 (337)
T ss_dssp EEEEETTSEEEEEETT--TCCEEEEE--ECSSCEEEEEEC
T ss_pred EEEecCCCcEEEEECC--CCeEEEEe--cCCCcEEEEEEC
Confidence 9999887777776543 33332221 124457777664
No 5
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=97.74 E-value=0.035 Score=56.09 Aligned_cols=147 Identities=10% Similarity=0.122 Sum_probs=88.2
Q ss_pred ccEEEEeecccCCCCcccceeEEEEEEEEeecCCCCccccCceEEEEE--EeeCCceEEEc-----cccCe-eEEEec-C
Q psy92 276 RGYIALGTNYNYSEDVTCRGRILLFDIIEVVPEPGQPLTKNKIKMIYA--KEQKGPVTAIC-----HVAGF-LVTAVG-Q 346 (638)
Q Consensus 276 ~~~ivVGT~~~~~ed~~~~GrI~vf~i~~vvpe~g~~~t~~kLkl~~~--~~~~G~V~al~-----~~~g~-Ll~avg-~ 346 (638)
..+++.|. ..|.|.+|++.. ++ ..+..+.. .....+|++++ .-++. |+++.. .
T Consensus 129 ~~~l~~~~---------~d~~i~vwd~~~-----~~----~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~ 190 (357)
T 3i2n_A 129 APEIVTGS---------RDGTVKVWDPRQ-----KD----DPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNG 190 (357)
T ss_dssp CCEEEEEE---------TTSCEEEECTTS-----CS----SCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTS
T ss_pred ccEEEEEe---------CCCeEEEEeCCC-----CC----CcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCC
Confidence 46788887 678999998643 11 01222111 11134788876 13444 444433 5
Q ss_pred EEEEEEeeCCceeeeEEeecceeEEEEee-----ecCEEEEeeccCcEEEEEEecc--CCeEEEEeccCCCcceeeeecc
Q psy92 347 KIYIWQLKDNDLTGIAFIDTEVYIASMVS-----VKNLILVGDYARSIALLRYQPE--YRTLSLVARDYKPTQPNSKGYY 419 (638)
Q Consensus 347 ~l~v~~l~~~~L~~~a~~d~~~~i~~i~~-----~~~~IlvgD~~~Sv~ll~~~~~--~~~l~~~arD~~~~~v~~~~~l 419 (638)
.|++|++...++... ......+.++.. .++++++|..-..|.++..+.. ...+....-......++++.|-
T Consensus 191 ~i~i~d~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 268 (357)
T 3i2n_A 191 DIKLFDLRNMALRWE--TNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHL 268 (357)
T ss_dssp EEEEEETTTTEEEEE--EECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEE
T ss_pred eEEEEECccCceeee--cCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEEC
Confidence 999999987765432 233445666664 4689999998888888776542 2233322222344567777674
Q ss_pred cCCCCCcccccccceeeeeeccccccccccccCCcccccccCCCceeEEEEeCCCcEEEEEeCC
Q psy92 420 AGNPSRGIIDGSLVWKFLQLSLGERLEICKKIGSKHNDILDEFSSMGFMISDKDKNVVLFMYQP 483 (638)
Q Consensus 420 ~~~~~~~~vd~~~~~~~~~~~~gd~~~~~~r~~~~~~~~~~~~~~l~~l~aD~~~nl~v~~~~~ 483 (638)
.+ ..-.++++..+|.+.++....
T Consensus 269 --------~~---------------------------------~~~~l~~~~~dg~i~iwd~~~ 291 (357)
T 3i2n_A 269 --------PQ---------------------------------NRELFLTAGGAGGLHLWKYEY 291 (357)
T ss_dssp --------TT---------------------------------EEEEEEEEETTSEEEEEEEEC
T ss_pred --------CC---------------------------------CCcEEEEEeCCCcEEEeecCC
Confidence 22 221377888999999999864
No 6
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=97.62 E-value=0.084 Score=54.43 Aligned_cols=140 Identities=14% Similarity=0.181 Sum_probs=83.3
Q ss_pred cEEEEeecccCCCCcccceeEEEEEEEEeecCCCCccccCceEEEEEEeeCCceEEEccc-cC-eeEEEe-cCEEEEEEe
Q psy92 277 GYIALGTNYNYSEDVTCRGRILLFDIIEVVPEPGQPLTKNKIKMIYAKEQKGPVTAICHV-AG-FLVTAV-GQKIYIWQL 353 (638)
Q Consensus 277 ~~ivVGT~~~~~ed~~~~GrI~vf~i~~vvpe~g~~~t~~kLkl~~~~~~~G~V~al~~~-~g-~Ll~av-g~~l~v~~l 353 (638)
..+++|+ ..|.|++|++.. ++ .+..+ ....++|++++-- +| +|+++. ...|++|++
T Consensus 218 ~~~~~~~---------~~g~i~~~d~~~-----~~-----~~~~~--~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~ 276 (425)
T 1r5m_A 218 DKFVIPG---------PKGAIFVYQITE-----KT-----PTGKL--IGHHGPISVLEFNDTNKLLLSASDDGTLRIWHG 276 (425)
T ss_dssp TEEEEEC---------GGGCEEEEETTC-----SS-----CSEEE--CCCSSCEEEEEEETTTTEEEEEETTSCEEEECS
T ss_pred CEEEEEc---------CCCeEEEEEcCC-----Cc-----eeeee--ccCCCceEEEEECCCCCEEEEEcCCCEEEEEEC
Confidence 4577777 678999998643 11 11111 1456888888633 34 455554 458999999
Q ss_pred eCCceeeeEEeecceeEEEEeeecC-EEEEeeccCcEEEEEEeccCCeEEEEeccCCCcceeeeecccCCCCCccccccc
Q psy92 354 KDNDLTGIAFIDTEVYIASMVSVKN-LILVGDYARSIALLRYQPEYRTLSLVARDYKPTQPNSKGYYAGNPSRGIIDGSL 432 (638)
Q Consensus 354 ~~~~L~~~a~~d~~~~i~~i~~~~~-~IlvgD~~~Sv~ll~~~~~~~~l~~~arD~~~~~v~~~~~l~~~~~~~~vd~~~ 432 (638)
...+....- ......+.++....+ ++++|..-..|.++.. ...+....-. .....++++.|- .|
T Consensus 277 ~~~~~~~~~-~~~~~~i~~~~~~~~~~l~~~~~d~~i~i~d~--~~~~~~~~~~-~~~~~i~~~~~s--------~~--- 341 (425)
T 1r5m_A 277 GNGNSQNCF-YGHSQSIVSASWVGDDKVISCSMDGSVRLWSL--KQNTLLALSI-VDGVPIFAGRIS--------QD--- 341 (425)
T ss_dssp SSBSCSEEE-CCCSSCEEEEEEETTTEEEEEETTSEEEEEET--TTTEEEEEEE-CTTCCEEEEEEC--------TT---
T ss_pred CCCccceEe-cCCCccEEEEEECCCCEEEEEeCCCcEEEEEC--CCCcEeEecc-cCCccEEEEEEc--------CC---
Confidence 865533211 123445666665533 8888888777777554 3333332222 223456676664 23
Q ss_pred ceeeeeeccccccccccccCCcccccccCCCceeEEEEeCCCcEEEEEeCC
Q psy92 433 VWKFLQLSLGERLEICKKIGSKHNDILDEFSSMGFMISDKDKNVVLFMYQP 483 (638)
Q Consensus 433 ~~~~~~~~~gd~~~~~~r~~~~~~~~~~~~~~l~~l~aD~~~nl~v~~~~~ 483 (638)
+. .++++..+|.+.++....
T Consensus 342 -----------------------------~~--~l~~~~~dg~i~i~~~~~ 361 (425)
T 1r5m_A 342 -----------------------------GQ--KYAVAFMDGQVNVYDLKK 361 (425)
T ss_dssp -----------------------------SS--EEEEEETTSCEEEEECHH
T ss_pred -----------------------------CC--EEEEEECCCeEEEEECCC
Confidence 32 477788899999998764
No 7
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=97.56 E-value=0.086 Score=53.52 Aligned_cols=192 Identities=12% Similarity=0.129 Sum_probs=112.3
Q ss_pred ccEEEEeecccCCCCcccceeEEEEEEEEeecCCCCccccCceEEEEEE-eeCCceEEEcccc---C-eeEEE-ecCEEE
Q psy92 276 RGYIALGTNYNYSEDVTCRGRILLFDIIEVVPEPGQPLTKNKIKMIYAK-EQKGPVTAICHVA---G-FLVTA-VGQKIY 349 (638)
Q Consensus 276 ~~~ivVGT~~~~~ed~~~~GrI~vf~i~~vvpe~g~~~t~~kLkl~~~~-~~~G~V~al~~~~---g-~Ll~a-vg~~l~ 349 (638)
..+++.|. ..|.|.+|++.. .+.+.+... ...++|++++-.. | .|+++ ...+|+
T Consensus 69 ~~~l~s~~---------~dg~v~iwd~~~-----------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~ 128 (379)
T 3jrp_A 69 GTILASCS---------YDGKVLIWKEEN-----------GRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVS 128 (379)
T ss_dssp CSEEEEEE---------TTSCEEEEEEET-----------TEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEE
T ss_pred CCEEEEec---------cCCEEEEEEcCC-----------CceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEE
Confidence 47888887 578999999864 233333333 3578999987432 4 34444 345899
Q ss_pred EEEeeCCcee-eeEEeecceeEEEEeee---------------cCEEEEeeccCcEEEEEEeccCCeEEEEec-cCCCcc
Q psy92 350 IWQLKDNDLT-GIAFIDTEVYIASMVSV---------------KNLILVGDYARSIALLRYQPEYRTLSLVAR-DYKPTQ 412 (638)
Q Consensus 350 v~~l~~~~L~-~~a~~d~~~~i~~i~~~---------------~~~IlvgD~~~Sv~ll~~~~~~~~l~~~ar-D~~~~~ 412 (638)
+|++...+.. ...+......+.++... ++++++|..-..|.++..+........+.. ......
T Consensus 129 v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~ 208 (379)
T 3jrp_A 129 VVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDW 208 (379)
T ss_dssp EEECCTTSCCCEEEEECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSC
T ss_pred EEecCCCCceeeEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCc
Confidence 9999865422 22222334455555543 679999999899998887654444333322 223445
Q ss_pred eeeeecccCCCCCcccccccceeeeeeccccccccccccCCcccccccCC--CceeEEEEeCCCcEEEEEeCCCCcCCCC
Q psy92 413 PNSKGYYAGNPSRGIIDGSLVWKFLQLSLGERLEICKKIGSKHNDILDEF--SSMGFMISDKDKNVVLFMYQPEARESNG 490 (638)
Q Consensus 413 v~~~~~l~~~~~~~~vd~~~~~~~~~~~~gd~~~~~~r~~~~~~~~~~~~--~~l~~l~aD~~~nl~v~~~~~~~~~s~~ 490 (638)
++++.|- .| + .. .++++..+|.+.++.......
T Consensus 209 v~~~~~s--------p~--------------------------------~~~~~-~l~s~~~dg~i~iwd~~~~~~---- 243 (379)
T 3jrp_A 209 VRDVAWS--------PT--------------------------------VLLRS-YLASVSQDRTCIIWTQDNEQG---- 243 (379)
T ss_dssp EEEEEEC--------CC--------------------------------CSSSE-EEEEEETTSCEEEEEESSTTS----
T ss_pred EeEEEEC--------CC--------------------------------CCCCC-eEEEEeCCCEEEEEeCCCCCc----
Confidence 7777663 22 1 33 488889999999998865311
Q ss_pred CceEEEEeeeecCcceeeEEEEeccCCCCCCCCCCCCceEEEEEeCCCcEEEEEe
Q psy92 491 GHRLIKKTDFHLGQHVNTFFKIRCKPSSISDAPGARSRFLTWYASLDGALGFFLP 545 (638)
Q Consensus 491 ~~~L~~~~~f~lg~~v~~~~~~~~~~~~~~~~~~~~~~~~il~~t~~GsIg~l~p 545 (638)
...............|+++.-.+ ....++.++.+|.|.+.-.
T Consensus 244 ~~~~~~~~~~~~~~~v~~~~~s~-------------~g~~l~~~~~dg~i~iw~~ 285 (379)
T 3jrp_A 244 PWKKTLLKEEKFPDVLWRASWSL-------------SGNVLALSGGDNKVTLWKE 285 (379)
T ss_dssp CCEEEESSSSCCSSCEEEEEECS-------------SSCCEEEEESSSSEEEEEE
T ss_pred cceeeeeccccCCCcEEEEEEcC-------------CCCEEEEecCCCcEEEEeC
Confidence 11111111122344455442211 1234677778888876643
No 8
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=97.54 E-value=0.05 Score=57.34 Aligned_cols=147 Identities=7% Similarity=0.033 Sum_probs=88.0
Q ss_pred EEEEcCCeEEEEEeCCCCCCCCCceeEEEeC---CCcccEEEEecCCCEEEEEEeeecCCCcccccCCccccccCCCCCC
Q psy92 146 LYFNAKSELRISVLPTHLSYDAPWPVRKVPL---KCTPHFLAYHLETKTYCIVTSTAEPSTDYYKFNGEDKELVTDPRDS 222 (638)
Q Consensus 146 l~~~~~~~L~I~~l~~~~~~~~~~~~r~ipL---~~tp~ri~y~~~~~~~~V~~s~~~~~~~~~~~~~e~~e~~~~~~~~ 222 (638)
+....++.+++-.+.. .-.++++.. ...+..++++|..+.++.++.
T Consensus 186 ~~~~~d~~i~iwd~~~------~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~------------------------- 234 (437)
T 3gre_A 186 VALTNLSRVIIFDIRT------LERLQIIENSPRHGAVSSICIDEECCVLILGTT------------------------- 234 (437)
T ss_dssp EEEETTSEEEEEETTT------CCEEEEEECCGGGCCEEEEEECTTSCEEEEEET-------------------------
T ss_pred EEEeCCCeEEEEeCCC------CeeeEEEccCCCCCceEEEEECCCCCEEEEEcC-------------------------
Confidence 3334568888877765 234555554 356788888888666554321
Q ss_pred CCCCCcccccEEEEEeCCCceeecceeecCCCceeEeEEEEE-EeeccCccCCcccEEEEeecccCCCCcccceeEEEEE
Q psy92 223 RFIPPLVSQFHVSLFSPFSWEEIPQTNFPLHEWEHVLCLKNV-SMEYEGTLSGLRGYIALGTNYNYSEDVTCRGRILLFD 301 (638)
Q Consensus 223 ~~~~p~~~~~~i~lid~~t~~~i~~~~~~l~~~E~v~si~~v-~l~~~~~~~~~~~~ivVGT~~~~~ed~~~~GrI~vf~ 301 (638)
.+.|++.|..+.+.+. .+.+.....+.+++.. .+. ....+++.|+ ..|.|.+|+
T Consensus 235 --------dg~i~iwd~~~~~~~~--~~~~~~~~~v~~~~~~~~~s------~~~~~l~s~~---------~dg~i~iwd 289 (437)
T 3gre_A 235 --------RGIIDIWDIRFNVLIR--SWSFGDHAPITHVEVCQFYG------KNSVIVVGGS---------SKTFLTIWN 289 (437)
T ss_dssp --------TSCEEEEETTTTEEEE--EEBCTTCEEEEEEEECTTTC------TTEEEEEEES---------TTEEEEEEE
T ss_pred --------CCeEEEEEcCCccEEE--EEecCCCCceEEEEeccccC------CCccEEEEEc---------CCCcEEEEE
Confidence 1247788877776654 5555555556665432 111 1356888887 678999998
Q ss_pred EEEeecCCCCccccCceEEEEE------------------------EeeCCceEEEccccCeeEEEec--CEEEEEEeeC
Q psy92 302 IIEVVPEPGQPLTKNKIKMIYA------------------------KEQKGPVTAICHVAGFLVTAVG--QKIYIWQLKD 355 (638)
Q Consensus 302 i~~vvpe~g~~~t~~kLkl~~~------------------------~~~~G~V~al~~~~g~Ll~avg--~~l~v~~l~~ 355 (638)
+.. + ..++.+.. ....++|++++--+|.++++.| .+|++|++.+
T Consensus 290 ~~~-----~-----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~~~~~l~s~~~d~~i~~wd~~~ 359 (437)
T 3gre_A 290 FVK-----G-----HCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVSNDKILLTDEATSSIVMFSLNE 359 (437)
T ss_dssp TTT-----T-----EEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEETTEEEEEEGGGTEEEEEETTC
T ss_pred cCC-----C-----cEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEECCceEEEecCCCCeEEEEECCC
Confidence 742 1 01111110 1145678888766776666654 5899999986
Q ss_pred Cce
Q psy92 356 NDL 358 (638)
Q Consensus 356 ~~L 358 (638)
.+.
T Consensus 360 ~~~ 362 (437)
T 3gre_A 360 LSS 362 (437)
T ss_dssp GGG
T ss_pred ccc
Confidence 653
No 9
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=97.53 E-value=0.03 Score=56.44 Aligned_cols=187 Identities=9% Similarity=-0.046 Sum_probs=103.4
Q ss_pred EcCCeEEEEEeCCCCCCCCCc-eeEEEeCCCcccEEEEecCCC-EEEEEEeeecCCCcccccCCccccccCCCCCCCCCC
Q psy92 149 NAKSELRISVLPTHLSYDAPW-PVRKVPLKCTPHFLAYHLETK-TYCIVTSTAEPSTDYYKFNGEDKELVTDPRDSRFIP 226 (638)
Q Consensus 149 ~~~~~L~I~~l~~~~~~~~~~-~~r~ipL~~tp~ri~y~~~~~-~~~V~~s~~~~~~~~~~~~~e~~e~~~~~~~~~~~~ 226 (638)
..++.++|-.+.... ... ..........+..++++|..+ .++.++..
T Consensus 30 ~~d~~v~iw~~~~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d---------------------------- 78 (342)
T 1yfq_A 30 SWDGSLTVYKFDIQA---KNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQ---------------------------- 78 (342)
T ss_dssp ETTSEEEEEEEETTT---TEEEEEEEEECSSCEEEEEEEESSSEEEEEEETT----------------------------
T ss_pred cCCCeEEEEEeCCCC---ccccceeeeecCCceEEEEECCCCCcEEEEEcCC----------------------------
Confidence 356788888777532 111 222334456788899998877 55443311
Q ss_pred CcccccEEEEEeC-CCceeecceeecC-CCceeEeEEEEEEeeccCccCCcccEEEEeecccCCCCcccceeEEEEEEEE
Q psy92 227 PLVSQFHVSLFSP-FSWEEIPQTNFPL-HEWEHVLCLKNVSMEYEGTLSGLRGYIALGTNYNYSEDVTCRGRILLFDIIE 304 (638)
Q Consensus 227 p~~~~~~i~lid~-~t~~~i~~~~~~l-~~~E~v~si~~v~l~~~~~~~~~~~~ivVGT~~~~~ed~~~~GrI~vf~i~~ 304 (638)
+.|++.|. .+.+.. .+.- .....+.+++ +.. ..+++.|+ ..|.|.+|++..
T Consensus 79 -----g~i~~wd~~~~~~~~---~~~~~~~~~~v~~l~---~~~-------~~~l~s~~---------~d~~i~iwd~~~ 131 (342)
T 1yfq_A 79 -----GEILKVDLIGSPSFQ---ALTNNEANLGICRIC---KYG-------DDKLIAAS---------WDGLIEVIDPRN 131 (342)
T ss_dssp -----SCEEEECSSSSSSEE---ECBSCCCCSCEEEEE---EET-------TTEEEEEE---------TTSEEEEECHHH
T ss_pred -----CeEEEEEeccCCceE---eccccCCCCceEEEE---eCC-------CCEEEEEc---------CCCeEEEEcccc
Confidence 12555554 433321 1221 0223455544 321 36777777 678999998753
Q ss_pred eecCCCCccccCceEEEEEEeeCCceEEEccccCeeEEEe-cCEEEEEEeeC-Cce-eeeEEeecceeEEEEee---ecC
Q psy92 305 VVPEPGQPLTKNKIKMIYAKEQKGPVTAICHVAGFLVTAV-GQKIYIWQLKD-NDL-TGIAFIDTEVYIASMVS---VKN 378 (638)
Q Consensus 305 vvpe~g~~~t~~kLkl~~~~~~~G~V~al~~~~g~Ll~av-g~~l~v~~l~~-~~L-~~~a~~d~~~~i~~i~~---~~~ 378 (638)
. +.+.. ..+.+.+......+.|++++-..+.|+++. ..+|++|++.. .+. ...........+.++.. .++
T Consensus 132 ~--~~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~ 207 (342)
T 1yfq_A 132 Y--GDGVI--AVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQE 207 (342)
T ss_dssp H--TTBCE--EEEESCSSSSSSCCCEEEEEECSSEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGC
T ss_pred c--ccccc--cccCCeeeEEeeCCceEEEEecCCcEEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCC
Confidence 0 00000 000011111125688999886666666664 44999999986 432 11122233445666654 468
Q ss_pred EEEEeeccCcEEEEEEecc
Q psy92 379 LILVGDYARSIALLRYQPE 397 (638)
Q Consensus 379 ~IlvgD~~~Sv~ll~~~~~ 397 (638)
++++|..-..+.+..++..
T Consensus 208 ~l~~~~~dg~i~i~~~~~~ 226 (342)
T 1yfq_A 208 GYACSSIDGRVAVEFFDDQ 226 (342)
T ss_dssp EEEEEETTSEEEEEECCTT
T ss_pred EEEEEecCCcEEEEEEcCC
Confidence 9999999888988888665
No 10
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=97.49 E-value=0.14 Score=53.60 Aligned_cols=266 Identities=13% Similarity=0.098 Sum_probs=147.0
Q ss_pred CcEEEEEcCCeEEEEEeCCCCCCCCCceeEEEeC--CCcccEEEEecCCCEEEEEEeeecCCCcccccCCccccccCCCC
Q psy92 143 RGFLYFNAKSELRISVLPTHLSYDAPWPVRKVPL--KCTPHFLAYHLETKTYCIVTSTAEPSTDYYKFNGEDKELVTDPR 220 (638)
Q Consensus 143 ~gfl~~~~~~~L~I~~l~~~~~~~~~~~~r~ipL--~~tp~ri~y~~~~~~~~V~~s~~~~~~~~~~~~~e~~e~~~~~~ 220 (638)
+.++....++.+++-.+.+. -..+.+.. ...+..++++|..+.+++++..
T Consensus 104 ~~l~~~~~d~~v~lw~~~~~------~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~d---------------------- 155 (401)
T 4aez_A 104 LNVVAVALERNVYVWNADSG------SVSALAETDESTYVASVKWSHDGSFLSVGLGN---------------------- 155 (401)
T ss_dssp TSEEEEEETTEEEEEETTTC------CEEEEEECCTTCCEEEEEECTTSSEEEEEETT----------------------
T ss_pred CCEEEEECCCeEEEeeCCCC------cEeEeeecCCCCCEEEEEECCCCCEEEEECCC----------------------
Confidence 44677777899998887762 23444554 4567889999977766654311
Q ss_pred CCCCCCCcccccEEEEEeCCCceeecceeecCCCceeEeEEEEEEeeccCccCCcccEEEEeecccCCCCcccceeEEEE
Q psy92 221 DSRFIPPLVSQFHVSLFSPFSWEEIPQTNFPLHEWEHVLCLKNVSMEYEGTLSGLRGYIALGTNYNYSEDVTCRGRILLF 300 (638)
Q Consensus 221 ~~~~~~p~~~~~~i~lid~~t~~~i~~~~~~l~~~E~v~si~~v~l~~~~~~~~~~~~ivVGT~~~~~ed~~~~GrI~vf 300 (638)
+.+++.|..+.+.+. .+.- ....+.|+. +. ..+++.|+ ..|.|.+|
T Consensus 156 -----------g~i~iwd~~~~~~~~--~~~~-~~~~v~~~~---~~--------~~~l~~~~---------~dg~i~i~ 201 (401)
T 4aez_A 156 -----------GLVDIYDVESQTKLR--TMAG-HQARVGCLS---WN--------RHVLSSGS---------RSGAIHHH 201 (401)
T ss_dssp -----------SCEEEEETTTCCEEE--EECC-CSSCEEEEE---EE--------TTEEEEEE---------TTSEEEEE
T ss_pred -----------CeEEEEECcCCeEEE--EecC-CCCceEEEE---EC--------CCEEEEEc---------CCCCEEEE
Confidence 236666665555443 3332 223455543 32 25888887 67999999
Q ss_pred EEEEeecCCCCccccCceEEEEEEeeCCceEEEccc-cCe-eEEEe-cCEEEEEEeeCCceeeeEEeecceeEEEEeee-
Q psy92 301 DIIEVVPEPGQPLTKNKIKMIYAKEQKGPVTAICHV-AGF-LVTAV-GQKIYIWQLKDNDLTGIAFIDTEVYIASMVSV- 376 (638)
Q Consensus 301 ~i~~vvpe~g~~~t~~kLkl~~~~~~~G~V~al~~~-~g~-Ll~av-g~~l~v~~l~~~~L~~~a~~d~~~~i~~i~~~- 376 (638)
++.. .+-.+..-....++|++++-- +|. |++|. ...|++|++...+.... +......+.++...
T Consensus 202 d~~~-----------~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~-~~~~~~~v~~~~~~p 269 (401)
T 4aez_A 202 DVRI-----------ANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFT-KTNHNAAVKAVAWCP 269 (401)
T ss_dssp ETTS-----------SSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEE-ECCCSSCCCEEEECT
T ss_pred eccc-----------CcceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEE-ecCCcceEEEEEECC
Confidence 8742 011122223467899988643 444 44443 36899999986553321 11233445555544
Q ss_pred -c-CEEEEee--ccCcEEEEEEeccCCeEEEEeccCCCcceeeeecccCCCCCcccccccceeeeeeccccccccccccC
Q psy92 377 -K-NLILVGD--YARSIALLRYQPEYRTLSLVARDYKPTQPNSKGYYAGNPSRGIIDGSLVWKFLQLSLGERLEICKKIG 452 (638)
Q Consensus 377 -~-~~IlvgD--~~~Sv~ll~~~~~~~~l~~~arD~~~~~v~~~~~l~~~~~~~~vd~~~~~~~~~~~~gd~~~~~~r~~ 452 (638)
+ ++++.|. .-..|.++..+. ...+..+. ....++++.+- .+
T Consensus 270 ~~~~ll~~~~gs~d~~i~i~d~~~-~~~~~~~~---~~~~v~~~~~s--------~~----------------------- 314 (401)
T 4aez_A 270 WQSNLLATGGGTMDKQIHFWNAAT-GARVNTVD---AGSQVTSLIWS--------PH----------------------- 314 (401)
T ss_dssp TSTTEEEEECCTTTCEEEEEETTT-CCEEEEEE---CSSCEEEEEEC--------SS-----------------------
T ss_pred CCCCEEEEecCCCCCEEEEEECCC-CCEEEEEe---CCCcEEEEEEC--------CC-----------------------
Confidence 3 5666654 455555544322 22233332 23457777664 33
Q ss_pred CcccccccCCCceeEEEE--eCCCcEEEEEeCCCCcCCCCCceEEEEeeee-cCcceeeEEEEeccCCCCCCCCCCCCce
Q psy92 453 SKHNDILDEFSSMGFMIS--DKDKNVVLFMYQPEARESNGGHRLIKKTDFH-LGQHVNTFFKIRCKPSSISDAPGARSRF 529 (638)
Q Consensus 453 ~~~~~~~~~~~~l~~l~a--D~~~nl~v~~~~~~~~~s~~~~~L~~~~~f~-lg~~v~~~~~~~~~~~~~~~~~~~~~~~ 529 (638)
+. .++++ ..+|.+.++..... ++.....+. ....|+.+.-. . ...
T Consensus 315 ---------~~--~l~~~~g~~dg~i~v~~~~~~--------~~~~~~~~~~h~~~v~~~~~s------------~-dg~ 362 (401)
T 4aez_A 315 ---------SK--EIMSTHGFPDNNLSIWSYSSS--------GLTKQVDIPAHDTRVLYSALS------------P-DGR 362 (401)
T ss_dssp ---------SS--EEEEEECTTTCEEEEEEEETT--------EEEEEEEEECCSSCCCEEEEC------------T-TSS
T ss_pred ---------CC--eEEEEeecCCCcEEEEecCCc--------cceeEEEecCCCCCEEEEEEC------------C-CCC
Confidence 33 34453 37899999987542 233333222 12345544221 1 234
Q ss_pred EEEEEeCCCcEEEEEeCChh
Q psy92 530 LTWYASLDGALGFFLPLPEK 549 (638)
Q Consensus 530 ~il~~t~~GsIg~l~pl~~~ 549 (638)
.++.++.+|.|...-.-..+
T Consensus 363 ~l~s~~~dg~i~iw~~~~~~ 382 (401)
T 4aez_A 363 ILSTAASDENLKFWRVYDGD 382 (401)
T ss_dssp EEEEECTTSEEEEEECCC--
T ss_pred EEEEEeCCCcEEEEECCCCc
Confidence 67888899999887665544
No 11
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=97.43 E-value=0.21 Score=54.51 Aligned_cols=156 Identities=13% Similarity=0.180 Sum_probs=96.3
Q ss_pred EEeeCCceEEEccccCeeEEEe--cCEEEEEEeeCCceeeeEEeecceeEEEEee--ecCEEEEeeccCcEEEEEEeccC
Q psy92 323 AKEQKGPVTAICHVAGFLVTAV--GQKIYIWQLKDNDLTGIAFIDTEVYIASMVS--VKNLILVGDYARSIALLRYQPEY 398 (638)
Q Consensus 323 ~~~~~G~V~al~~~~g~Ll~av--g~~l~v~~l~~~~L~~~a~~d~~~~i~~i~~--~~~~IlvgD~~~Sv~ll~~~~~~ 398 (638)
.....++|++++--+.+|+++. ..+|++|++.+.++....+......++++.. .+.++++|+.-..|.++.. +.
T Consensus 442 ~~~~~~~~~~~~~~~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~--~~ 519 (615)
T 1pgu_A 442 SVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDL--QS 519 (615)
T ss_dssp EEECSSCEEEEEECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEET--TT
T ss_pred ecccCCCceEEEEcCCEEEEeecCCCeEEEEECCCccccccccCCccCceEEEEECCCCCEEEEcCCCCeEEEeeC--CC
Confidence 3346788888875544555555 4689999998766543222233445666665 5789999998888877654 33
Q ss_pred CeEEEEeccCCCcceeeeecccCCCCCccc----------ccccceeeeeeccccccccccccCCcccccccCCCceeEE
Q psy92 399 RTLSLVARDYKPTQPNSKGYYAGNPSRGII----------DGSLVWKFLQLSLGERLEICKKIGSKHNDILDEFSSMGFM 468 (638)
Q Consensus 399 ~~l~~~arD~~~~~v~~~~~l~~~~~~~~v----------d~~~~~~~~~~~~gd~~~~~~r~~~~~~~~~~~~~~l~~l 468 (638)
.+....-.......++++.|- . | +. .++
T Consensus 520 ~~~~~~~~~~h~~~v~~~~~s--------p~~~~~~~~~~~--------------------------------~~--~l~ 557 (615)
T 1pgu_A 520 REVKTSRWAFRTSKINAISWK--------PAEKGANEEEIE--------------------------------ED--LVA 557 (615)
T ss_dssp TEEEECCSCCCSSCEEEEEEC--------CCC------CCS--------------------------------CC--EEE
T ss_pred CcceeEeecCCCCceeEEEEc--------CccccccccccC--------------------------------CC--EEE
Confidence 444333222245668887774 3 2 22 477
Q ss_pred EEeCCCcEEEEEeCCCCcCCCCCceEEEEeeeecCcceeeEEEEeccCCCCCCCCCCCCceEEEEEeCCCcEEEEE
Q psy92 469 ISDKDKNVVLFMYQPEARESNGGHRLIKKTDFHLGQHVNTFFKIRCKPSSISDAPGARSRFLTWYASLDGALGFFL 544 (638)
Q Consensus 469 ~aD~~~nl~v~~~~~~~~~s~~~~~L~~~~~f~lg~~v~~~~~~~~~~~~~~~~~~~~~~~~il~~t~~GsIg~l~ 544 (638)
+++.++.++++..... .++.....-| ...|+++.-.+ ... ++.++.+|.|.+.-
T Consensus 558 ~~~~dg~i~iw~~~~~-------~~~~~~~~~h-~~~v~~l~~s~-------------~~~-l~s~~~d~~v~iw~ 611 (615)
T 1pgu_A 558 TGSLDTNIFIYSVKRP-------MKIIKALNAH-KDGVNNLLWET-------------PST-LVSSGADACIKRWN 611 (615)
T ss_dssp EEETTSCEEEEESSCT-------TCCEEETTSS-TTCEEEEEEEE-------------TTE-EEEEETTSCEEEEE
T ss_pred EEcCCCcEEEEECCCC-------ceechhhhcC-ccceEEEEEcC-------------CCC-eEEecCCceEEEEe
Confidence 8889999999987542 1222222223 45566654332 124 88899999987653
No 12
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=97.41 E-value=0.1 Score=53.78 Aligned_cols=107 Identities=12% Similarity=0.092 Sum_probs=59.5
Q ss_pred ccE-EEEeecccCCCCcccceeEEEEEEEEeecCC-CCccccCceE-EEEE-----EeeCCceEEEccc-cCeeEEEe-c
Q psy92 276 RGY-IALGTNYNYSEDVTCRGRILLFDIIEVVPEP-GQPLTKNKIK-MIYA-----KEQKGPVTAICHV-AGFLVTAV-G 345 (638)
Q Consensus 276 ~~~-ivVGT~~~~~ed~~~~GrI~vf~i~~vvpe~-g~~~t~~kLk-l~~~-----~~~~G~V~al~~~-~g~Ll~av-g 345 (638)
..+ +++|+ ..|.|++|++....++. ++.. ..... .+.. ....++|++++-. +|.|+++. .
T Consensus 137 ~~~~l~~~~---------~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~d 206 (397)
T 1sq9_A 137 LSHRLVATD---------VKGTTYIWKFHPFADESNSLTL-NWSPTLELQGTVESPMTPSQFATSVDISERGLIATGFNN 206 (397)
T ss_dssp -CEEEEEEE---------TTSCEEEEEEESSSSHHHHTTT-CCCCEEEEEEEECCSSSSCCCCCEEEECTTSEEEEECTT
T ss_pred CceEEEEEe---------CCCcEEEEeCCcccccccccee-eccCcceeeeeeccccCCCCCceEEEECCCceEEEEeCC
Confidence 466 88887 57999999987410000 0100 00000 1111 2246788888643 34444442 3
Q ss_pred CEEEEEEeeCCceeeeEEeec-------ceeEEEEee--ecCEEEEeecc---CcEEEEEE
Q psy92 346 QKIYIWQLKDNDLTGIAFIDT-------EVYIASMVS--VKNLILVGDYA---RSIALLRY 394 (638)
Q Consensus 346 ~~l~v~~l~~~~L~~~a~~d~-------~~~i~~i~~--~~~~IlvgD~~---~Sv~ll~~ 394 (638)
..|++|++...+... .+.. ...+.++.. .++++++|..- ..|.++..
T Consensus 207 g~i~i~d~~~~~~~~--~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~ 265 (397)
T 1sq9_A 207 GTVQISELSTLRPLY--NFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYET 265 (397)
T ss_dssp SEEEEEETTTTEEEE--EEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEET
T ss_pred CcEEEEECCCCceeE--EEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEEC
Confidence 589999998655332 2333 455666665 46889988876 66666544
No 13
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=97.38 E-value=0.069 Score=53.88 Aligned_cols=146 Identities=12% Similarity=0.195 Sum_probs=93.6
Q ss_pred ccEEEEeecccCCCCcccceeEEEEEEEEeecCCCCccccCceEEEEEEeeCCceEEEc---cccCeeEEEe--cCEEEE
Q psy92 276 RGYIALGTNYNYSEDVTCRGRILLFDIIEVVPEPGQPLTKNKIKMIYAKEQKGPVTAIC---HVAGFLVTAV--GQKIYI 350 (638)
Q Consensus 276 ~~~ivVGT~~~~~ed~~~~GrI~vf~i~~vvpe~g~~~t~~kLkl~~~~~~~G~V~al~---~~~g~Ll~av--g~~l~v 350 (638)
..+|+.|+ ..|.|.+|++.. .+ .+......++|++++ .-+|.++++. ...|++
T Consensus 98 ~~~l~s~~---------~dg~v~iwd~~~-----------~~--~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~v 155 (368)
T 3mmy_A 98 GSKVFTAS---------CDKTAKMWDLSS-----------NQ--AIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKF 155 (368)
T ss_dssp SSEEEEEE---------TTSEEEEEETTT-----------TE--EEEEEECSSCEEEEEEEECSSCEEEEEEETTSEEEE
T ss_pred CCEEEEEc---------CCCcEEEEEcCC-----------CC--ceeeccccCceEEEEEEeCCCCCEEEEccCCCcEEE
Confidence 46888887 678999998642 12 233445789999998 4456544444 468999
Q ss_pred EEeeCCceeeeEEeecceeEEEEeeecCEEEEeeccCcEEEEEEeccCCeEEEEeccCCCcceeeeecccCCCCCccccc
Q psy92 351 WQLKDNDLTGIAFIDTEVYIASMVSVKNLILVGDYARSIALLRYQPEYRTLSLVARDYKPTQPNSKGYYAGNPSRGIIDG 430 (638)
Q Consensus 351 ~~l~~~~L~~~a~~d~~~~i~~i~~~~~~IlvgD~~~Sv~ll~~~~~~~~l~~~arD~~~~~v~~~~~l~~~~~~~~vd~ 430 (638)
|++...+... .+..+..+.++....+.++++..-..+.++..+.....+..+.. .......+..+. .+.
T Consensus 156 wd~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~--------~~~ 224 (368)
T 3mmy_A 156 WDTRSSNPMM--VLQLPERCYCADVIYPMAVVATAERGLIVYQLENQPSEFRRIES-PLKHQHRCVAIF--------KDK 224 (368)
T ss_dssp ECSSCSSCSE--EEECSSCEEEEEEETTEEEEEEGGGCEEEEECSSSCEEEEECCC-SCSSCEEEEEEE--------ECT
T ss_pred EECCCCcEEE--EEecCCCceEEEecCCeeEEEeCCCcEEEEEeccccchhhhccc-cccCCCceEEEc--------ccC
Confidence 9998665432 33455567777778899999999999988877654444433332 222333333332 120
Q ss_pred ccceeeeeeccccccccccccCCcccccccCCCceeEEEEeCCCcEEEEEeCCC
Q psy92 431 SLVWKFLQLSLGERLEICKKIGSKHNDILDEFSSMGFMISDKDKNVVLFMYQPE 484 (638)
Q Consensus 431 ~~~~~~~~~~~gd~~~~~~r~~~~~~~~~~~~~~l~~l~aD~~~nl~v~~~~~~ 484 (638)
....-.++++..++.+.++..+..
T Consensus 225 ------------------------------~~~~~~~~~~~~dg~i~i~~~~~~ 248 (368)
T 3mmy_A 225 ------------------------------QNKPTGFALGSIEGRVAIHYINPP 248 (368)
T ss_dssp ------------------------------TSCEEEEEEEETTSEEEEEESSCS
T ss_pred ------------------------------CCCCCeEEEecCCCcEEEEecCCC
Confidence 011113888899999999988763
No 14
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=97.37 E-value=0.072 Score=54.48 Aligned_cols=196 Identities=7% Similarity=0.065 Sum_probs=106.4
Q ss_pred EEEEEcCCeEEEEEeCCCC---CCCCCceeEEEeCCC--cccEEEEec--CCCEEEEEEeeecCCCcccccCCccccccC
Q psy92 145 FLYFNAKSELRISVLPTHL---SYDAPWPVRKVPLKC--TPHFLAYHL--ETKTYCIVTSTAEPSTDYYKFNGEDKELVT 217 (638)
Q Consensus 145 fl~~~~~~~L~I~~l~~~~---~~~~~~~~r~ipL~~--tp~ri~y~~--~~~~~~V~~s~~~~~~~~~~~~~e~~e~~~ 217 (638)
++....++.+++...+... ++...-.++.+.++. ....++++| ..+.++.+. .
T Consensus 88 ~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s-~------------------- 147 (343)
T 3lrv_A 88 IISRGPCNRLLLLYPGNQITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWAD-N------------------- 147 (343)
T ss_dssp EEEECSTTEEEEEETTTEEEEEETTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEE-T-------------------
T ss_pred eEEecCCCeEEEEEccCceEEeecCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEe-C-------------------
Confidence 5555567788887665321 112233355555553 377788887 555444322 1
Q ss_pred CCCCCCCCCCcccccEEEEEeCCCceeecceeecCCCceeEeEEEEEEeeccCccCCcccEEEEeecccCCCCcccceeE
Q psy92 218 DPRDSRFIPPLVSQFHVSLFSPFSWEEIPQTNFPLHEWEHVLCLKNVSMEYEGTLSGLRGYIALGTNYNYSEDVTCRGRI 297 (638)
Q Consensus 218 ~~~~~~~~~p~~~~~~i~lid~~t~~~i~~~~~~l~~~E~v~si~~v~l~~~~~~~~~~~~ivVGT~~~~~ed~~~~GrI 297 (638)
...+++.|..+.+.+. .+.......+.|+ .+.. ...++++|+ ..|.|
T Consensus 148 -------------dg~i~~wd~~~~~~~~--~~~~~~~~~i~~~---~~~p------dg~~lasg~---------~dg~i 194 (343)
T 3lrv_A 148 -------------RGTIGFQSYEDDSQYI--VHSAKSDVEYSSG---VLHK------DSLLLALYS---------PDGIL 194 (343)
T ss_dssp -------------TCCEEEEESSSSCEEE--EECCCSSCCCCEE---EECT------TSCEEEEEC---------TTSCE
T ss_pred -------------CCcEEEEECCCCcEEE--EEecCCCCceEEE---EECC------CCCEEEEEc---------CCCEE
Confidence 1236666655554432 2222233335554 3432 247899987 77899
Q ss_pred EEEEEEEeecCCCCccccCceEEEEEEeeCCceEEEcc-ccC-eeEEEecCEEEEEEeeCCce-eeeEE-----eeccee
Q psy92 298 LLFDIIEVVPEPGQPLTKNKIKMIYAKEQKGPVTAICH-VAG-FLVTAVGQKIYIWQLKDNDL-TGIAF-----IDTEVY 369 (638)
Q Consensus 298 ~vf~i~~vvpe~g~~~t~~kLkl~~~~~~~G~V~al~~-~~g-~Ll~avg~~l~v~~l~~~~L-~~~a~-----~d~~~~ 369 (638)
.+|++.. + ..+.........++|++|+- -+| +|+++...+|++|++...+. ..... ......
T Consensus 195 ~iwd~~~-----~-----~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~ 264 (343)
T 3lrv_A 195 DVYNLSS-----P-----DQASSRFPVDEEAKIKEVKFADNGYWMVVECDQTVVCFDLRKDVGTLAYPTYTIPEFKTGTV 264 (343)
T ss_dssp EEEESSC-----T-----TSCCEECCCCTTSCEEEEEECTTSSEEEEEESSBEEEEETTSSTTCBSSCCCBC-----CCE
T ss_pred EEEECCC-----C-----CCCccEEeccCCCCEEEEEEeCCCCEEEEEeCCeEEEEEcCCCCcceeecccccccccccce
Confidence 9999753 1 11201111124689999973 234 56666666999999985542 21111 111111
Q ss_pred EEEEeeecCEEEEeec-cCcEEEEEEeccCCeEEE
Q psy92 370 IASMVSVKNLILVGDY-ARSIALLRYQPEYRTLSL 403 (638)
Q Consensus 370 i~~i~~~~~~IlvgD~-~~Sv~ll~~~~~~~~l~~ 403 (638)
..+....+.++++|.. -..+.++.|+........
T Consensus 265 ~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~~~~~ 299 (343)
T 3lrv_A 265 TYDIDDSGKNMIAYSNESNSLTIYKFDKKTKNWTK 299 (343)
T ss_dssp EEEECTTSSEEEEEETTTTEEEEEEECTTTCSEEE
T ss_pred EEEECCCCCEEEEecCCCCcEEEEEEcccccceEe
Confidence 1233344789999777 778999888665444443
No 15
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=97.37 E-value=0.043 Score=57.82 Aligned_cols=198 Identities=15% Similarity=0.152 Sum_probs=100.9
Q ss_pred EEEEcCCeEEEEEeCCCCCCCCCceeEEEeCCCcccEEEEecCCCEEEEEEeeecCCCcccccCCccccccCCCCCCCCC
Q psy92 146 LYFNAKSELRISVLPTHLSYDAPWPVRKVPLKCTPHFLAYHLETKTYCIVTSTAEPSTDYYKFNGEDKELVTDPRDSRFI 225 (638)
Q Consensus 146 l~~~~~~~L~I~~l~~~~~~~~~~~~r~ipL~~tp~ri~y~~~~~~~~V~~s~~~~~~~~~~~~~e~~e~~~~~~~~~~~ 225 (638)
+....++.++|-.+.....-...-......-...+..++++|..+.++.++..... ....+...
T Consensus 80 ~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i--~vwd~~~~-------------- 143 (437)
T 3gre_A 80 ITGSDQGVIKIWNLKEIIVGEVYSSSLTYDCSSTVTQITMIPNFDAFAVSSKDGQI--IVLKVNHY-------------- 143 (437)
T ss_dssp EEEETTSEEEEEEHHHHHTTCCCSCSEEEECSSCEEEEEECTTSSEEEEEETTSEE--EEEEEEEE--------------
T ss_pred EEecCCceEEEeECcccccCcccceeeeccCCCCEEEEEEeCCCCEEEEEeCCCEE--EEEEeccc--------------
Confidence 33345788888877651100001123344556778899999977776654422110 00001000
Q ss_pred CCcccccEEEEEeCCCceeecceeecCC---CceeEeEEEEEEeeccCccCCcccEEEEeecccCCCCcccceeEEEEEE
Q psy92 226 PPLVSQFHVSLFSPFSWEEIPQTNFPLH---EWEHVLCLKNVSMEYEGTLSGLRGYIALGTNYNYSEDVTCRGRILLFDI 302 (638)
Q Consensus 226 ~p~~~~~~i~lid~~t~~~i~~~~~~l~---~~E~v~si~~v~l~~~~~~~~~~~~ivVGT~~~~~ed~~~~GrI~vf~i 302 (638)
.....++... ...+. .+.+. ..+.++|+... ... ...+++.|+ ..|.|.+|++
T Consensus 144 ---~~~~~~~~~~---~~~i~--~~~~~~~~~~~~~~~~~~~--~~~-----~~~~l~~~~---------~d~~i~iwd~ 199 (437)
T 3gre_A 144 ---QQESEVKFLN---CECIR--KINLKNFGKNEYAVRMRAF--VNE-----EKSLLVALT---------NLSRVIIFDI 199 (437)
T ss_dssp ---EETTEEEEEE---EEEEE--EEEGGGGSSCCCEEEEEEE--ECS-----SCEEEEEEE---------TTSEEEEEET
T ss_pred ---cCCceeeccc---cceeE--EEEccCcccccCceEEEEE--EcC-----CCCEEEEEe---------CCCeEEEEeC
Confidence 0001111111 11221 33333 34556665433 111 357888888 6789999986
Q ss_pred EEeecCCCCccccCceEEEEEE-eeCCceEEEccc-cCe-eEEEe-cCEEEEEEeeCCceeeeEEeecceeEEEEeee--
Q psy92 303 IEVVPEPGQPLTKNKIKMIYAK-EQKGPVTAICHV-AGF-LVTAV-GQKIYIWQLKDNDLTGIAFIDTEVYIASMVSV-- 376 (638)
Q Consensus 303 ~~vvpe~g~~~t~~kLkl~~~~-~~~G~V~al~~~-~g~-Ll~av-g~~l~v~~l~~~~L~~~a~~d~~~~i~~i~~~-- 376 (638)
.. .+....... ...++|++++-- +|. |++|. ...|++|++...++...-.+.....++++...
T Consensus 200 ~~-----------~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~ 268 (437)
T 3gre_A 200 RT-----------LERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQF 268 (437)
T ss_dssp TT-----------CCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTT
T ss_pred CC-----------CeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccc
Confidence 42 122222221 156899999732 344 44443 34799999987654432222334456666432
Q ss_pred ----cCEEEEeeccCcEEEEEE
Q psy92 377 ----KNLILVGDYARSIALLRY 394 (638)
Q Consensus 377 ----~~~IlvgD~~~Sv~ll~~ 394 (638)
+.+++.|..-..|.++..
T Consensus 269 ~s~~~~~l~s~~~dg~i~iwd~ 290 (437)
T 3gre_A 269 YGKNSVIVVGGSSKTFLTIWNF 290 (437)
T ss_dssp TCTTEEEEEEESTTEEEEEEET
T ss_pred cCCCccEEEEEcCCCcEEEEEc
Confidence 347777776666766554
No 16
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=97.33 E-value=0.042 Score=58.71 Aligned_cols=103 Identities=13% Similarity=0.121 Sum_probs=60.3
Q ss_pred ccEEEEeecccCCCCcccceeEEEEEEEEeecCCCCccccCceEEEEEEeeCCceEEEcccc----C-eeEEE-ecCEEE
Q psy92 276 RGYIALGTNYNYSEDVTCRGRILLFDIIEVVPEPGQPLTKNKIKMIYAKEQKGPVTAICHVA----G-FLVTA-VGQKIY 349 (638)
Q Consensus 276 ~~~ivVGT~~~~~ed~~~~GrI~vf~i~~vvpe~g~~~t~~kLkl~~~~~~~G~V~al~~~~----g-~Ll~a-vg~~l~ 349 (638)
..+|++|. ..|.+++|++.. ++... ..+..+ ....++|++++--. | +|++| ...+|+
T Consensus 161 ~~~l~~~~---------~~g~v~~~~~~~-----~~~~~-~~~~~~--~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~ 223 (450)
T 2vdu_B 161 DTTVIIAD---------KFGDVYSIDINS-----IPEEK-FTQEPI--LGHVSMLTDVHLIKDSDGHQFIITSDRDEHIK 223 (450)
T ss_dssp SSEEEEEE---------TTSEEEEEETTS-----CCCSS-CCCCCS--EECSSCEEEEEEEECTTSCEEEEEEETTSCEE
T ss_pred CCEEEEEe---------CCCcEEEEecCC-----ccccc-ccceee--ecccCceEEEEEcCCCCCCcEEEEEcCCCcEE
Confidence 47888886 578999998643 11100 000011 23468899886432 4 44444 345899
Q ss_pred EEEeeCCceeeeEEeecceeEEEEee-ecCEEEEeeccCcEEEEEEe
Q psy92 350 IWQLKDNDLTGIAFIDTEVYIASMVS-VKNLILVGDYARSIALLRYQ 395 (638)
Q Consensus 350 v~~l~~~~L~~~a~~d~~~~i~~i~~-~~~~IlvgD~~~Sv~ll~~~ 395 (638)
+|++...++...-.......+.++.. .+++++.|..-..|.++.++
T Consensus 224 vwd~~~~~~~~~~~~~h~~~v~~~~~sd~~~l~s~~~d~~v~vwd~~ 270 (450)
T 2vdu_B 224 ISHYPQCFIVDKWLFGHKHFVSSICCGKDYLLLSAGGDDKIFAWDWK 270 (450)
T ss_dssp EEEESCTTCEEEECCCCSSCEEEEEECSTTEEEEEESSSEEEEEETT
T ss_pred EEECCCCceeeeeecCCCCceEEEEECCCCEEEEEeCCCeEEEEECC
Confidence 99998766543222122344555544 57899999877777776543
No 17
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=97.29 E-value=0.18 Score=50.39 Aligned_cols=256 Identities=12% Similarity=0.087 Sum_probs=135.6
Q ss_pred EEEEEcC--CeEEEEEeCCCCCCCCCceeEEEeCCCcccEEEEecCCCEEEEEEeeecCCCcccccCCccccccCCCCCC
Q psy92 145 FLYFNAK--SELRISVLPTHLSYDAPWPVRKVPLKCTPHFLAYHLETKTYCIVTSTAEPSTDYYKFNGEDKELVTDPRDS 222 (638)
Q Consensus 145 fl~~~~~--~~L~I~~l~~~~~~~~~~~~r~ipL~~tp~ri~y~~~~~~~~V~~s~~~~~~~~~~~~~e~~e~~~~~~~~ 222 (638)
++++... +.+.+..++... +..-.+..++.+..|+.++++|..+.++++....
T Consensus 51 ~l~~~~~~~~~v~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~----------------------- 105 (343)
T 1ri6_A 51 YLYVGVRPEFRVLAYRIAPDD--GALTFAAESALPGSLTHISTDHQGQFVFVGSYNA----------------------- 105 (343)
T ss_dssp EEEEEETTTTEEEEEEECTTT--CCEEEEEEEECSSCCSEEEECTTSSEEEEEETTT-----------------------
T ss_pred EEEEeecCCCeEEEEEecCCC--CceeeccccccCCCCcEEEEcCCCCEEEEEecCC-----------------------
Confidence 4555543 788888887311 1223566788888999999999988766543210
Q ss_pred CCCCCcccccEEEEEeC---CCceeecceeecCCCceeEeEEEEEEeeccCccCCcccEEEEeecccCCCCcccceeEEE
Q psy92 223 RFIPPLVSQFHVSLFSP---FSWEEIPQTNFPLHEWEHVLCLKNVSMEYEGTLSGLRGYIALGTNYNYSEDVTCRGRILL 299 (638)
Q Consensus 223 ~~~~p~~~~~~i~lid~---~t~~~i~~~~~~l~~~E~v~si~~v~l~~~~~~~~~~~~ivVGT~~~~~ed~~~~GrI~v 299 (638)
..+.+++. .+.+.+. .+.. ...+.++ .+.. ...+++++.. ..|+|.+
T Consensus 106 ---------~~i~~~d~~~~~~~~~~~--~~~~--~~~~~~~---~~s~------dg~~l~~~~~--------~~~~v~~ 155 (343)
T 1ri6_A 106 ---------GNVSVTRLEDGLPVGVVD--VVEG--LDGCHSA---NISP------DNRTLWVPAL--------KQDRICL 155 (343)
T ss_dssp ---------TEEEEEEEETTEEEEEEE--EECC--CTTBCCC---EECT------TSSEEEEEEG--------GGTEEEE
T ss_pred ---------CeEEEEECCCCccccccc--cccC--CCCceEE---EECC------CCCEEEEecC--------CCCEEEE
Confidence 12334433 2222221 1221 1123332 2322 1245555541 3578999
Q ss_pred EEEEEeecCCCCccccCceEEEE--EEee--CCceEEEc-cccC-eeEEEe--cCEEEEEEeeC--CceeeeEEee-c--
Q psy92 300 FDIIEVVPEPGQPLTKNKIKMIY--AKEQ--KGPVTAIC-HVAG-FLVTAV--GQKIYIWQLKD--NDLTGIAFID-T-- 366 (638)
Q Consensus 300 f~i~~vvpe~g~~~t~~kLkl~~--~~~~--~G~V~al~-~~~g-~Ll~av--g~~l~v~~l~~--~~L~~~a~~d-~-- 366 (638)
|++.. +.+++.+. .... ...+.+++ .-+| +|+++. ..++.+|++.. .++....... .
T Consensus 156 ~d~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~ 225 (343)
T 1ri6_A 156 FTVSD----------DGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPE 225 (343)
T ss_dssp EEECT----------TSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCT
T ss_pred EEecC----------CCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCc
Confidence 98842 13444433 2222 23555554 2234 465554 46899999963 3443322222 1
Q ss_pred ----ceeEEEEeee--cCEEEEeecc-CcEEEEEEeccCCeEEEEeccCCCcceeeeecccCCCCCcccccccceeeeee
Q psy92 367 ----EVYIASMVSV--KNLILVGDYA-RSIALLRYQPEYRTLSLVARDYKPTQPNSKGYYAGNPSRGIIDGSLVWKFLQL 439 (638)
Q Consensus 367 ----~~~i~~i~~~--~~~IlvgD~~-~Sv~ll~~~~~~~~l~~~arD~~~~~v~~~~~l~~~~~~~~vd~~~~~~~~~~ 439 (638)
...+..+... +.++++++.. ..+.++..+.+..++..+..-.....+.++.|- .|
T Consensus 226 ~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~s--------~d---------- 287 (343)
T 1ri6_A 226 NFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVD--------HS---------- 287 (343)
T ss_dssp TCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEEC--------TT----------
T ss_pred cccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCCccceEEEC--------CC----------
Confidence 1233344443 5688877754 457776665434444444332222224444442 22
Q ss_pred ccccccccccccCCcccccccCCCceeEEEEe-CCCcEEEEEeCCCCcCCCCCceEEEEeeeecCcceeeEEEEe
Q psy92 440 SLGERLEICKKIGSKHNDILDEFSSMGFMISD-KDKNVVLFMYQPEARESNGGHRLIKKTDFHLGQHVNTFFKIR 513 (638)
Q Consensus 440 ~~gd~~~~~~r~~~~~~~~~~~~~~l~~l~aD-~~~nl~v~~~~~~~~~s~~~~~L~~~~~f~lg~~v~~~~~~~ 513 (638)
+. .+++++ .++.+.+|..+++ ..++.....+.+|..+..+.-.+
T Consensus 288 ----------------------g~--~l~~~~~~~~~v~v~~~d~~------~g~~~~~~~~~~g~~p~~i~~~~ 332 (343)
T 1ri6_A 288 ----------------------GK--YLIAAGQKSHHISVYEIVGE------QGLLHEKGRYAVGQGPMWVVVNA 332 (343)
T ss_dssp ----------------------SS--EEEEECTTTCEEEEEEEETT------TTEEEEEEEEECSSSCCEEEEEE
T ss_pred ----------------------CC--EEEEecCCCCeEEEEEEcCC------CceeeEccccccCCCCeeEEEEc
Confidence 33 245555 5788999988764 23677778888888777765443
No 18
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=97.26 E-value=0.042 Score=57.64 Aligned_cols=152 Identities=8% Similarity=0.051 Sum_probs=90.3
Q ss_pred cEEEEEeCCCceeecceeecCCCceeEeEEEEEEeeccCccCCcccEEEEeecccCCCCcccceeEEEEEEEEeecCCCC
Q psy92 232 FHVSLFSPFSWEEIPQTNFPLHEWEHVLCLKNVSMEYEGTLSGLRGYIALGTNYNYSEDVTCRGRILLFDIIEVVPEPGQ 311 (638)
Q Consensus 232 ~~i~lid~~t~~~i~~~~~~l~~~E~v~si~~v~l~~~~~~~~~~~~ivVGT~~~~~ed~~~~GrI~vf~i~~vvpe~g~ 311 (638)
..|++.+..+.+... .+.......+.|++ +.. ...++++|+ ..|.|.+|++..
T Consensus 113 ~~v~lw~~~~~~~~~--~~~~~~~~~v~~v~---~s~------~~~~l~~~~---------~dg~i~iwd~~~------- 165 (401)
T 4aez_A 113 RNVYVWNADSGSVSA--LAETDESTYVASVK---WSH------DGSFLSVGL---------GNGLVDIYDVES------- 165 (401)
T ss_dssp TEEEEEETTTCCEEE--EEECCTTCCEEEEE---ECT------TSSEEEEEE---------TTSCEEEEETTT-------
T ss_pred CeEEEeeCCCCcEeE--eeecCCCCCEEEEE---ECC------CCCEEEEEC---------CCCeEEEEECcC-------
Confidence 568888887766654 45554555666654 332 247899998 578999998632
Q ss_pred ccccCceEEEEEEeeCCceEEEccccCeeEEEe--cCEEEEEEeeCCceeeeEEeecceeEEEEee--ecCEEEEeeccC
Q psy92 312 PLTKNKIKMIYAKEQKGPVTAICHVAGFLVTAV--GQKIYIWQLKDNDLTGIAFIDTEVYIASMVS--VKNLILVGDYAR 387 (638)
Q Consensus 312 ~~t~~kLkl~~~~~~~G~V~al~~~~g~Ll~av--g~~l~v~~l~~~~L~~~a~~d~~~~i~~i~~--~~~~IlvgD~~~ 387 (638)
...+..+ ....++|++++- ++.++++. ..+|++|++....-....+......+.++.. .++++++|..-.
T Consensus 166 ---~~~~~~~--~~~~~~v~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~ 239 (401)
T 4aez_A 166 ---QTKLRTM--AGHQARVGCLSW-NRHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDN 239 (401)
T ss_dssp ---CCEEEEE--CCCSSCEEEEEE-ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTS
T ss_pred ---CeEEEEe--cCCCCceEEEEE-CCCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCC
Confidence 1122222 245789999876 55544443 3589999998433222222233445666655 467999999888
Q ss_pred cEEEEEEeccCCeEEEEeccCCCcceeeeecc
Q psy92 388 SIALLRYQPEYRTLSLVARDYKPTQPNSKGYY 419 (638)
Q Consensus 388 Sv~ll~~~~~~~~l~~~arD~~~~~v~~~~~l 419 (638)
.|.++..... ..+..+. ....++.++.+-
T Consensus 240 ~v~iwd~~~~-~~~~~~~--~~~~~v~~~~~~ 268 (401)
T 4aez_A 240 VVQIWDARSS-IPKFTKT--NHNAAVKAVAWC 268 (401)
T ss_dssp CEEEEETTCS-SEEEEEC--CCSSCCCEEEEC
T ss_pred eEEEccCCCC-CccEEec--CCcceEEEEEEC
Confidence 8887655432 2222221 234456676664
No 19
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=97.23 E-value=0.051 Score=54.96 Aligned_cols=232 Identities=12% Similarity=0.085 Sum_probs=125.4
Q ss_pred EcCCeEEEEEeCCCCCCCCCceeEEEe-CCCcccEEEEec-CCCEEEEEEeeecCCCcccccCCccccccCCCCCCCCCC
Q psy92 149 NAKSELRISVLPTHLSYDAPWPVRKVP-LKCTPHFLAYHL-ETKTYCIVTSTAEPSTDYYKFNGEDKELVTDPRDSRFIP 226 (638)
Q Consensus 149 ~~~~~L~I~~l~~~~~~~~~~~~r~ip-L~~tp~ri~y~~-~~~~~~V~~s~~~~~~~~~~~~~e~~e~~~~~~~~~~~~ 226 (638)
..++.+++-.+.+. -.++.+. -...+..++++| ..+.++.++ .
T Consensus 92 ~~dg~i~v~d~~~~------~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~-~---------------------------- 136 (366)
T 3k26_A 92 GSRGIIRIINPITM------QCIKHYVGHGNAINELKFHPRDPNLLLSVS-K---------------------------- 136 (366)
T ss_dssp ETTCEEEEECTTTC------CEEEEEESCCSCEEEEEECSSCTTEEEEEE-T----------------------------
T ss_pred cCCCEEEEEEchhc------eEeeeecCCCCcEEEEEECCCCCCEEEEEe-C----------------------------
Confidence 35677877766542 3355555 345688899998 555444332 1
Q ss_pred CcccccEEEEEeCCCceeecceeec--CCCceeEeEEEEEEeeccCccCCcccEEEEeecccCCCCcccceeEEEEEEEE
Q psy92 227 PLVSQFHVSLFSPFSWEEIPQTNFP--LHEWEHVLCLKNVSMEYEGTLSGLRGYIALGTNYNYSEDVTCRGRILLFDIIE 304 (638)
Q Consensus 227 p~~~~~~i~lid~~t~~~i~~~~~~--l~~~E~v~si~~v~l~~~~~~~~~~~~ivVGT~~~~~ed~~~~GrI~vf~i~~ 304 (638)
.+.|++.|..+.+.+. .+. ......+.++ .+.. ...+++.|. ..|.|.+|++..
T Consensus 137 ----dg~i~iwd~~~~~~~~--~~~~~~~~~~~v~~~---~~~~------~~~~l~~~~---------~dg~i~i~d~~~ 192 (366)
T 3k26_A 137 ----DHALRLWNIQTDTLVA--IFGGVEGHRDEVLSA---DYDL------LGEKIMSCG---------MDHSLKLWRINS 192 (366)
T ss_dssp ----TSCEEEEETTTTEEEE--EECSTTSCSSCEEEE---EECT------TSSEEEEEE---------TTSCEEEEESCS
T ss_pred ----CCeEEEEEeecCeEEE--EecccccccCceeEE---EECC------CCCEEEEec---------CCCCEEEEECCC
Confidence 1236667666555543 221 1222345444 3432 246788887 578999998753
Q ss_pred eec----------CCCCcc---cc--CceEEEEE-EeeCCceEEEccccCeeEEE-ecCEEEEEEeeCCce---------
Q psy92 305 VVP----------EPGQPL---TK--NKIKMIYA-KEQKGPVTAICHVAGFLVTA-VGQKIYIWQLKDNDL--------- 358 (638)
Q Consensus 305 vvp----------e~g~~~---t~--~kLkl~~~-~~~~G~V~al~~~~g~Ll~a-vg~~l~v~~l~~~~L--------- 358 (638)
... .|+... .. ........ ....++|++++-.+.+|+++ ....|++|++...+.
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~ 272 (366)
T 3k26_A 193 KRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWLGDLILSKSCENAIVCWKPGKMEDDIDKIKPSE 272 (366)
T ss_dssp HHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEETTEEEEECSSSEEEEEEESSTTCCGGGCCTTC
T ss_pred CccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEcCCEEEEEecCCEEEEEeCCCccccccccccCC
Confidence 100 000000 00 00000111 11568888887554455544 345899999875431
Q ss_pred ---eeeEEeec-ceeEEEE--eee--cCEEEEeeccCcEEEEEEeccC---CeEEEEeccCCCcceeeeecccCCCCCcc
Q psy92 359 ---TGIAFIDT-EVYIASM--VSV--KNLILVGDYARSIALLRYQPEY---RTLSLVARDYKPTQPNSKGYYAGNPSRGI 427 (638)
Q Consensus 359 ---~~~a~~d~-~~~i~~i--~~~--~~~IlvgD~~~Sv~ll~~~~~~---~~l~~~arD~~~~~v~~~~~l~~~~~~~~ 427 (638)
.....+.. ...+.++ ... ++++++|+.-..|.++..+... ..+..+........++++.|-
T Consensus 273 ~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s-------- 344 (366)
T 3k26_A 273 SNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFS-------- 344 (366)
T ss_dssp CCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEEC--------
T ss_pred cchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCccccceEEcccccCCceEEEEeC--------
Confidence 12222221 1123333 334 7899999988888888765432 133333333234567787774
Q ss_pred cccccceeeeeeccccccccccccCCcccccccCCCceeEEEEeCCCcEEEEEe
Q psy92 428 IDGSLVWKFLQLSLGERLEICKKIGSKHNDILDEFSSMGFMISDKDKNVVLFMY 481 (638)
Q Consensus 428 vd~~~~~~~~~~~~gd~~~~~~r~~~~~~~~~~~~~~l~~l~aD~~~nl~v~~~ 481 (638)
.| +. .++++..+|.++++..
T Consensus 345 ~~--------------------------------~~--~l~s~~~dg~i~iwd~ 364 (366)
T 3k26_A 345 RD--------------------------------SS--ILIAVCDDASIWRWDR 364 (366)
T ss_dssp TT--------------------------------SS--EEEEEETTSEEEEEEC
T ss_pred CC--------------------------------CC--eEEEEeCCCEEEEEEe
Confidence 33 32 4778889999998875
No 20
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=97.22 E-value=0.16 Score=52.84 Aligned_cols=218 Identities=9% Similarity=0.049 Sum_probs=121.9
Q ss_pred EEEEEeCCCceeecceeecCCCceeEeEEEEEEeeccCccCCcccEEEEeecccCCCCcccceeEEEEEEEEeecCCCCc
Q psy92 233 HVSLFSPFSWEEIPQTNFPLHEWEHVLCLKNVSMEYEGTLSGLRGYIALGTNYNYSEDVTCRGRILLFDIIEVVPEPGQP 312 (638)
Q Consensus 233 ~i~lid~~t~~~i~~~~~~l~~~E~v~si~~v~l~~~~~~~~~~~~ivVGT~~~~~ed~~~~GrI~vf~i~~vvpe~g~~ 312 (638)
.+++.|..+.+.+. .+. .....|.|++ +.. ...+|+.|+ ..|.|.+|++.. +
T Consensus 120 ~i~iwd~~~~~~~~--~~~-~h~~~v~~~~---~~~------~~~~l~s~s---------~d~~i~iwd~~~-----~-- 171 (420)
T 3vl1_A 120 DIKVLDSNFNLQRE--IDQ-AHVSEITKLK---FFP------SGEALISSS---------QDMQLKIWSVKD-----G-- 171 (420)
T ss_dssp CEEEECTTSCEEEE--ETT-SSSSCEEEEE---ECT------TSSEEEEEE---------TTSEEEEEETTT-----C--
T ss_pred CEEEEeCCCcceee--ecc-cccCccEEEE---ECC------CCCEEEEEe---------CCCeEEEEeCCC-----C--
Confidence 36677766555432 221 2223455543 432 246888887 678999998742 1
Q ss_pred cccCceEEEEEEeeCCceEEEccc-cC-eeEEEe-cCEEEEEEeeCCceeeeEEe--ecceeEEEEe-------------
Q psy92 313 LTKNKIKMIYAKEQKGPVTAICHV-AG-FLVTAV-GQKIYIWQLKDNDLTGIAFI--DTEVYIASMV------------- 374 (638)
Q Consensus 313 ~t~~kLkl~~~~~~~G~V~al~~~-~g-~Ll~av-g~~l~v~~l~~~~L~~~a~~--d~~~~i~~i~------------- 374 (638)
..+..+ ....++|++++-- +| +|+++. ..+|++|++...+....-.. .....+.++.
T Consensus 172 ---~~~~~~--~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 246 (420)
T 3vl1_A 172 ---SNPRTL--IGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEIS 246 (420)
T ss_dssp ---CCCEEE--ECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGC
T ss_pred ---cCceEE--cCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecc
Confidence 122222 3467899998743 34 455444 35799999986653321110 1112222222
Q ss_pred ----------eecCEEEEeeccCcEEEEEEeccCCeEEEEeccCCCcceeeeecccCCCCCcccccccceeeeeeccccc
Q psy92 375 ----------SVKNLILVGDYARSIALLRYQPEYRTLSLVARDYKPTQPNSKGYYAGNPSRGIIDGSLVWKFLQLSLGER 444 (638)
Q Consensus 375 ----------~~~~~IlvgD~~~Sv~ll~~~~~~~~l~~~arD~~~~~v~~~~~l~~~~~~~~vd~~~~~~~~~~~~gd~ 444 (638)
..+++|++|..-..|.++..+.. ..+..+ .......++++.|- .+
T Consensus 247 ~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~-~~~~~~~v~~~~~~--------~~--------------- 301 (420)
T 3vl1_A 247 TSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSK-EQTIQL-PSKFTCSCNSLTVD--------GN--------------- 301 (420)
T ss_dssp CCCCCTTCSSCTTEEEEEEETTSCEEEEETTTC-CEEEEE-CCTTSSCEEEEEEC--------SS---------------
T ss_pred cCcccceEEcCCCCEEEEEcCCCeEEEEECCCC-ceeEEc-ccccCCCceeEEEe--------CC---------------
Confidence 23568899988888877654332 223222 22334567777774 23
Q ss_pred cccccccCCcccccccCCCceeEEEEeCCCcEEEEEeCCCCcCCCCCceEEEEeeeecCcceeeEEEEeccCCCCCCCCC
Q psy92 445 LEICKKIGSKHNDILDEFSSMGFMISDKDKNVVLFMYQPEARESNGGHRLIKKTDFHLGQHVNTFFKIRCKPSSISDAPG 524 (638)
Q Consensus 445 ~~~~~r~~~~~~~~~~~~~~l~~l~aD~~~nl~v~~~~~~~~~s~~~~~L~~~~~f~lg~~v~~~~~~~~~~~~~~~~~~ 524 (638)
+.. .++++..+|.+.++..... .++......|-+..|+.+.- +
T Consensus 302 -----------------~~~-~l~~g~~dg~i~vwd~~~~-------~~~~~~~~~~~~~~v~~~~~-~----------- 344 (420)
T 3vl1_A 302 -----------------NAN-YIYAGYENGMLAQWDLRSP-------ECPVGEFLINEGTPINNVYF-A----------- 344 (420)
T ss_dssp -----------------CTT-EEEEEETTSEEEEEETTCT-------TSCSEEEEESTTSCEEEEEE-E-----------
T ss_pred -----------------CCC-EEEEEeCCCeEEEEEcCCC-------cCchhhhhccCCCCceEEEe-C-----------
Confidence 322 3778889999999976542 22223333445666766532 1
Q ss_pred CCCceEEEEEeCCCcEEEEEeCC
Q psy92 525 ARSRFLTWYASLDGALGFFLPLP 547 (638)
Q Consensus 525 ~~~~~~il~~t~~GsIg~l~pl~ 547 (638)
....++.++.+|.|-+.-.-.
T Consensus 345 --~~~~l~s~~~d~~v~iw~~~~ 365 (420)
T 3vl1_A 345 --AGALFVSSGFDTSIKLDIISD 365 (420)
T ss_dssp --TTEEEEEETTTEEEEEEEECC
T ss_pred --CCCEEEEecCCccEEEEeccC
Confidence 124677888899988776543
No 21
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=97.22 E-value=0.18 Score=57.59 Aligned_cols=152 Identities=12% Similarity=0.142 Sum_probs=92.3
Q ss_pred CcccEEEEecCCCEEEEEEeeecCCCcccccCCccccccCCCCCCCCCCCcccccEEEEEeCCCceeecceeecCCCcee
Q psy92 178 CTPHFLAYHLETKTYCIVTSTAEPSTDYYKFNGEDKELVTDPRDSRFIPPLVSQFHVSLFSPFSWEEIPQTNFPLHEWEH 257 (638)
Q Consensus 178 ~tp~ri~y~~~~~~~~V~~s~~~~~~~~~~~~~e~~e~~~~~~~~~~~~p~~~~~~i~lid~~t~~~i~~~~~~l~~~E~ 257 (638)
..++.+++||..+.++++.. .+.|++.|..+.+.+. .+...+ ..
T Consensus 14 ~~v~~i~~sp~~~~la~~~~---------------------------------~g~v~iwd~~~~~~~~--~~~~~~-~~ 57 (814)
T 3mkq_A 14 DRVKGIDFHPTEPWVLTTLY---------------------------------SGRVEIWNYETQVEVR--SIQVTE-TP 57 (814)
T ss_dssp SCEEEEEECSSSSEEEEEET---------------------------------TSEEEEEETTTTEEEE--EEECCS-SC
T ss_pred CceEEEEECCCCCEEEEEeC---------------------------------CCEEEEEECCCCceEE--EEecCC-Cc
Confidence 34678888887776654431 1347777776666554 344322 23
Q ss_pred EeEEEEEEeeccCccCCcccEEEEeecccCCCCcccceeEEEEEEEEeecCCCCccccCceEEEEEEeeCCceEEEccc-
Q psy92 258 VLCLKNVSMEYEGTLSGLRGYIALGTNYNYSEDVTCRGRILLFDIIEVVPEPGQPLTKNKIKMIYAKEQKGPVTAICHV- 336 (638)
Q Consensus 258 v~si~~v~l~~~~~~~~~~~~ivVGT~~~~~ed~~~~GrI~vf~i~~vvpe~g~~~t~~kLkl~~~~~~~G~V~al~~~- 336 (638)
+.|+ .+.. ...+|++|+ ..|.|.+|++.. ...+..+ ....++|++++--
T Consensus 58 v~~~---~~s~------~~~~l~~~~---------~dg~i~vw~~~~----------~~~~~~~--~~~~~~v~~~~~s~ 107 (814)
T 3mkq_A 58 VRAG---KFIA------RKNWIIVGS---------DDFRIRVFNYNT----------GEKVVDF--EAHPDYIRSIAVHP 107 (814)
T ss_dssp EEEE---EEEG------GGTEEEEEE---------TTSEEEEEETTT----------CCEEEEE--ECCSSCEEEEEECS
T ss_pred EEEE---EEeC------CCCEEEEEe---------CCCeEEEEECCC----------CcEEEEE--ecCCCCEEEEEEeC
Confidence 4444 4433 357899997 578999998642 1122222 2367899998733
Q ss_pred cC-eeEEEe-cCEEEEEEeeCCceeeeEEeecceeEEEEee---ecCEEEEeeccCcEEEEEEe
Q psy92 337 AG-FLVTAV-GQKIYIWQLKDNDLTGIAFIDTEVYIASMVS---VKNLILVGDYARSIALLRYQ 395 (638)
Q Consensus 337 ~g-~Ll~av-g~~l~v~~l~~~~L~~~a~~d~~~~i~~i~~---~~~~IlvgD~~~Sv~ll~~~ 395 (638)
+| +|+++. ...|++|++..+.-....+......+.++.. .++++++|..-..|.++...
T Consensus 108 ~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~ 171 (814)
T 3mkq_A 108 TKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLG 171 (814)
T ss_dssp SSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETT
T ss_pred CCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECC
Confidence 34 455544 3589999998653222222233455666665 45688899888888776653
No 22
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=97.22 E-value=0.22 Score=50.03 Aligned_cols=216 Identities=15% Similarity=0.190 Sum_probs=118.5
Q ss_pred EEEEEeCCCceeecceeecCCCceeEeEEEEEEeeccCccCCcccEEEEeecccCCCCcccceeEEEEEEEEeecCCCCc
Q psy92 233 HVSLFSPFSWEEIPQTNFPLHEWEHVLCLKNVSMEYEGTLSGLRGYIALGTNYNYSEDVTCRGRILLFDIIEVVPEPGQP 312 (638)
Q Consensus 233 ~i~lid~~t~~~i~~~~~~l~~~E~v~si~~v~l~~~~~~~~~~~~ivVGT~~~~~ed~~~~GrI~vf~i~~vvpe~g~~ 312 (638)
.+++.|..+.+.+. .+...+ ..+.++ .|.. ...+|+.|. ..|.|.+|++.. +
T Consensus 36 ~v~lWd~~~~~~~~--~~~~~~-~~v~~~---~~~~------~~~~l~s~s---------~d~~i~vwd~~~-----~-- 87 (304)
T 2ynn_A 36 RVELWNYETQVEVR--SIQVTE-TPVRAG---KFIA------RKNWIIVGS---------DDFRIRVFNYNT-----G-- 87 (304)
T ss_dssp EEEEEETTTTEEEE--EEECCS-SCEEEE---EEEG------GGTEEEEEE---------TTSEEEEEETTT-----C--
T ss_pred cEEEEECCCCceeE--EeeccC-CcEEEE---EEeC------CCCEEEEEC---------CCCEEEEEECCC-----C--
Confidence 47777766665543 343332 234443 3432 357888887 678999998642 1
Q ss_pred cccCceEEEEEEeeCCceEEEccc-cC-eeEEEe-cCEEEEEEeeCCceeeeEEeecceeEEEEeee---cCEEEEeecc
Q psy92 313 LTKNKIKMIYAKEQKGPVTAICHV-AG-FLVTAV-GQKIYIWQLKDNDLTGIAFIDTEVYIASMVSV---KNLILVGDYA 386 (638)
Q Consensus 313 ~t~~kLkl~~~~~~~G~V~al~~~-~g-~Ll~av-g~~l~v~~l~~~~L~~~a~~d~~~~i~~i~~~---~~~IlvgD~~ 386 (638)
..+.. -+...++|++++-- ++ +|+.|. ..+|++|++..+.-....+..-...+.++... +++++.|..-
T Consensus 88 ---~~~~~--~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D 162 (304)
T 2ynn_A 88 ---EKVVD--FEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLD 162 (304)
T ss_dssp ---CEEEE--EECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEETT
T ss_pred ---cEEEE--EeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeCC
Confidence 12221 12457889998732 34 444443 35899999986532222222233456666653 4688888888
Q ss_pred CcEEEEEEeccCCeEEEEeccCCCcceeeeecccCCCCCcccccccceeeeeeccccccccccccCCcccccccCCCcee
Q psy92 387 RSIALLRYQPEYRTLSLVARDYKPTQPNSKGYYAGNPSRGIIDGSLVWKFLQLSLGERLEICKKIGSKHNDILDEFSSMG 466 (638)
Q Consensus 387 ~Sv~ll~~~~~~~~l~~~arD~~~~~v~~~~~l~~~~~~~~vd~~~~~~~~~~~~gd~~~~~~r~~~~~~~~~~~~~~l~ 466 (638)
..|.+.........+.... .....+..+.+. .. .+.. .
T Consensus 163 ~~v~iwd~~~~~~~~~~~~--~~~~~v~~~~~~--------~~-------------------------------~~~~-~ 200 (304)
T 2ynn_A 163 RTVKVWSLGQSTPNFTLTT--GQERGVNYVDYY--------PL-------------------------------PDKP-Y 200 (304)
T ss_dssp SEEEEEETTCSSCSEEEEC--CCTTCEEEEEEC--------CS-------------------------------TTCC-E
T ss_pred CeEEEEECCCCCccceecc--CCcCcEEEEEEE--------Ec-------------------------------CCCC-E
Confidence 8888766533222233221 222334444443 11 0222 4
Q ss_pred EEEEeCCCcEEEEEeCCCCcCCCCCceEEEEeeeecCcceeeEEEEeccCCCCCCCCCCCCceEEEEEeCCCcEEEEEe
Q psy92 467 FMISDKDKNVVLFMYQPEARESNGGHRLIKKTDFHLGQHVNTFFKIRCKPSSISDAPGARSRFLTWYASLDGALGFFLP 545 (638)
Q Consensus 467 ~l~aD~~~nl~v~~~~~~~~~s~~~~~L~~~~~f~lg~~v~~~~~~~~~~~~~~~~~~~~~~~~il~~t~~GsIg~l~p 545 (638)
++.+..++.+.++..... ++...-.-|. ..|+.+.-.+ ..+.++.++.||.|-+.-.
T Consensus 201 l~s~s~D~~i~iWd~~~~--------~~~~~~~~h~-~~v~~~~~~p-------------~~~~l~s~s~Dg~i~iWd~ 257 (304)
T 2ynn_A 201 MITASDDLTIKIWDYQTK--------SCVATLEGHM-SNVSFAVFHP-------------TLPIIISGSEDGTLKIWNS 257 (304)
T ss_dssp EEEEETTSEEEEEETTTT--------EEEEEEECCS-SCEEEEEECS-------------SSSEEEEEETTSCEEEEET
T ss_pred EEEEcCCCeEEEEeCCCC--------ccceeeCCCC-CCEEEEEECC-------------CCCEEEEEcCCCeEEEEEC
Confidence 778888999999976531 2222222232 2344332111 1346888899999977653
No 23
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=97.18 E-value=0.32 Score=51.35 Aligned_cols=206 Identities=11% Similarity=0.141 Sum_probs=119.2
Q ss_pred cEEEEEeCCCceeecceeecCCCceeEeEEEEEEeeccCccCCcccEEEEeecccCCCCcccceeEEEEEEEEeecCCCC
Q psy92 232 FHVSLFSPFSWEEIPQTNFPLHEWEHVLCLKNVSMEYEGTLSGLRGYIALGTNYNYSEDVTCRGRILLFDIIEVVPEPGQ 311 (638)
Q Consensus 232 ~~i~lid~~t~~~i~~~~~~l~~~E~v~si~~v~l~~~~~~~~~~~~ivVGT~~~~~ed~~~~GrI~vf~i~~vvpe~g~ 311 (638)
+.+++.|..+.+.+. .+.-. ...+.|+. +. ..++++|+ ..|.|.+|++..
T Consensus 219 g~i~~wd~~~~~~~~--~~~~~-~~~v~~~~---~~--------~~~l~~~~---------~dg~i~iwd~~~------- 268 (445)
T 2ovr_B 219 ATLRVWDIETGQCLH--VLMGH-VAAVRCVQ---YD--------GRRVVSGA---------YDFMVKVWDPET------- 268 (445)
T ss_dssp SEEEEEESSSCCEEE--EEECC-SSCEEEEE---EC--------SSCEEEEE---------TTSCEEEEEGGG-------
T ss_pred CEEEEEECCCCcEEE--EEcCC-cccEEEEE---EC--------CCEEEEEc---------CCCEEEEEECCC-------
Confidence 357777766555443 23222 23455543 31 35788887 678999998632
Q ss_pred ccccCceEEEEEE-eeCCceEEEccccCeeEEEe-cCEEEEEEeeCCceeeeEEeecceeEEEEeeecCEEEEeeccCcE
Q psy92 312 PLTKNKIKMIYAK-EQKGPVTAICHVAGFLVTAV-GQKIYIWQLKDNDLTGIAFIDTEVYIASMVSVKNLILVGDYARSI 389 (638)
Q Consensus 312 ~~t~~kLkl~~~~-~~~G~V~al~~~~g~Ll~av-g~~l~v~~l~~~~L~~~a~~d~~~~i~~i~~~~~~IlvgD~~~Sv 389 (638)
-+.+... ...++|++++--+.+|+++. ..+|++|++...+.... +......+.++...++++++|..-..|
T Consensus 269 ------~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~~~v~~~~~~~~~l~~~~~dg~i 341 (445)
T 2ovr_B 269 ------ETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHT-LTGHQSLTSGMELKDNILVSGNADSTV 341 (445)
T ss_dssp ------TEEEEEECCCSSCEEEEEECSSEEEEEETTSCEEEEETTTCCEEEE-ECCCCSCEEEEEEETTEEEEEETTSCE
T ss_pred ------CcEeEEecCCCCceEEEEECCCEEEEEeCCCeEEEEECCCCCEEEE-EcCCcccEEEEEEeCCEEEEEeCCCeE
Confidence 1222322 35688999886333454443 45899999987664321 112234566777789999999988888
Q ss_pred EEEEEeccCCeEEEEec-cCCCcceeeeecccCCCCCcccccccceeeeeeccccccccccccCCcccccccCCCceeEE
Q psy92 390 ALLRYQPEYRTLSLVAR-DYKPTQPNSKGYYAGNPSRGIIDGSLVWKFLQLSLGERLEICKKIGSKHNDILDEFSSMGFM 468 (638)
Q Consensus 390 ~ll~~~~~~~~l~~~ar-D~~~~~v~~~~~l~~~~~~~~vd~~~~~~~~~~~~gd~~~~~~r~~~~~~~~~~~~~~l~~l 468 (638)
.++..+. ...+..+.. ......++++.+ + +. .++
T Consensus 342 ~vwd~~~-~~~~~~~~~~~~~~~~v~~~~~----------~--------------------------------~~--~l~ 376 (445)
T 2ovr_B 342 KIWDIKT-GQCLQTLQGPNKHQSAVTCLQF----------N--------------------------------KN--FVI 376 (445)
T ss_dssp EEEETTT-CCEEEEECSTTSCSSCEEEEEE----------C--------------------------------SS--EEE
T ss_pred EEEECCC-CcEEEEEccCCCCCCCEEEEEE----------C--------------------------------CC--EEE
Confidence 8865532 223333322 223445666555 3 22 478
Q ss_pred EEeCCCcEEEEEeCCCCcCCCCCceEEEEeee---ecCcceeeEEEEeccCCCCCCCCCCCCceEEEEEeCCCc
Q psy92 469 ISDKDKNVVLFMYQPEARESNGGHRLIKKTDF---HLGQHVNTFFKIRCKPSSISDAPGARSRFLTWYASLDGA 539 (638)
Q Consensus 469 ~aD~~~nl~v~~~~~~~~~s~~~~~L~~~~~f---~lg~~v~~~~~~~~~~~~~~~~~~~~~~~~il~~t~~Gs 539 (638)
++..+|.+.++.... +..+.....+ ..+..|+++.-. .....+..++.+|.
T Consensus 377 s~~~dg~v~iwd~~~-------~~~~~~~~~~~~~~~~~~v~~~~~s-------------~~~~~la~~~~dg~ 430 (445)
T 2ovr_B 377 TSSDDGTVKLWDLKT-------GEFIRNLVTLESGGSGGVVWRIRAS-------------NTKLVCAVGSRNGT 430 (445)
T ss_dssp EEETTSEEEEEETTT-------CCEEEEEEECTTGGGTCEEEEEEEC-------------SSEEEEEEECSSSS
T ss_pred EEeCCCeEEEEECCC-------CceeeeeeccccCCCCceEEEEEec-------------CCEEEEEEcccCCC
Confidence 888999999997653 2333333222 233445544221 12456777888887
No 24
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=97.15 E-value=0.25 Score=49.56 Aligned_cols=99 Identities=19% Similarity=0.244 Sum_probs=64.9
Q ss_pred ccEEEEeecccCCCCcccceeEEEEEEEEeecCCCCccccCceEEEEEEeeCCceEEEccc----cC-eeEEEe-cCEEE
Q psy92 276 RGYIALGTNYNYSEDVTCRGRILLFDIIEVVPEPGQPLTKNKIKMIYAKEQKGPVTAICHV----AG-FLVTAV-GQKIY 349 (638)
Q Consensus 276 ~~~ivVGT~~~~~ed~~~~GrI~vf~i~~vvpe~g~~~t~~kLkl~~~~~~~G~V~al~~~----~g-~Ll~av-g~~l~ 349 (638)
..++++|+ ..|.|.+|++.. .+ .+.....+++|++++-- ++ +|+++. ..+|+
T Consensus 180 ~~~l~~~~---------~d~~i~i~d~~~-----------~~--~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~ 237 (357)
T 3i2n_A 180 ERVVCAGY---------DNGDIKLFDLRN-----------MA--LRWETNIKNGVCSLEFDRKDISMNKLVATSLEGKFH 237 (357)
T ss_dssp CCEEEEEE---------TTSEEEEEETTT-----------TE--EEEEEECSSCEEEEEESCSSSSCCEEEEEESTTEEE
T ss_pred CCEEEEEc---------cCCeEEEEECcc-----------Cc--eeeecCCCCceEEEEcCCCCCCCCEEEEECCCCeEE
Confidence 57888887 678999998642 12 24446678999999744 34 454443 45899
Q ss_pred EEEeeCCcee-eeE---EeecceeEEEEeeec--C-EEEEeeccCcEEEEEEec
Q psy92 350 IWQLKDNDLT-GIA---FIDTEVYIASMVSVK--N-LILVGDYARSIALLRYQP 396 (638)
Q Consensus 350 v~~l~~~~L~-~~a---~~d~~~~i~~i~~~~--~-~IlvgD~~~Sv~ll~~~~ 396 (638)
+|++...+.. ... .-.....+.++.... . +++.|..-..|.++..+.
T Consensus 238 i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 291 (357)
T 3i2n_A 238 VFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEY 291 (357)
T ss_dssp EEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEEC
T ss_pred EEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCC
Confidence 9999854422 211 112344566666553 3 788898888898888764
No 25
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=97.14 E-value=0.29 Score=51.70 Aligned_cols=150 Identities=13% Similarity=0.164 Sum_probs=89.0
Q ss_pred cEEEEEeCCCceeecceeecCCCceeEeEEEEEEeeccCccCCcccEEEEeecccCCCCcccceeEEEEEEEEeecCCCC
Q psy92 232 FHVSLFSPFSWEEIPQTNFPLHEWEHVLCLKNVSMEYEGTLSGLRGYIALGTNYNYSEDVTCRGRILLFDIIEVVPEPGQ 311 (638)
Q Consensus 232 ~~i~lid~~t~~~i~~~~~~l~~~E~v~si~~v~l~~~~~~~~~~~~ivVGT~~~~~ed~~~~GrI~vf~i~~vvpe~g~ 311 (638)
+.+++.|..+.+.+. .+.-.. ..+.++. +. ..++++|+ ..|.|.+|++.. +
T Consensus 259 g~i~iwd~~~~~~~~--~~~~~~-~~v~~~~---~~--------~~~l~~~~---------~d~~i~i~d~~~-----~- 309 (445)
T 2ovr_B 259 FMVKVWDPETETCLH--TLQGHT-NRVYSLQ---FD--------GIHVVSGS---------LDTSIRVWDVET-----G- 309 (445)
T ss_dssp SCEEEEEGGGTEEEE--EECCCS-SCEEEEE---EC--------SSEEEEEE---------TTSCEEEEETTT-----C-
T ss_pred CEEEEEECCCCcEeE--EecCCC-CceEEEE---EC--------CCEEEEEe---------CCCeEEEEECCC-----C-
Confidence 347777776666554 343222 2355543 31 36788887 678999998642 1
Q ss_pred ccccCceEEEEE-EeeCCceEEEccccCeeEEEe-cCEEEEEEeeCCceeeeEEe--ecceeEEEEeeecCEEEEeeccC
Q psy92 312 PLTKNKIKMIYA-KEQKGPVTAICHVAGFLVTAV-GQKIYIWQLKDNDLTGIAFI--DTEVYIASMVSVKNLILVGDYAR 387 (638)
Q Consensus 312 ~~t~~kLkl~~~-~~~~G~V~al~~~~g~Ll~av-g~~l~v~~l~~~~L~~~a~~--d~~~~i~~i~~~~~~IlvgD~~~ 387 (638)
+ .+.. ....+.+.++..-+++|+++. ..+|++|++.+.+....-.. .....++++...++++++|..-.
T Consensus 310 -----~--~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg 382 (445)
T 2ovr_B 310 -----N--CIHTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDG 382 (445)
T ss_dssp -----C--EEEEECCCCSCEEEEEEETTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEECSSEEEEEETTS
T ss_pred -----C--EEEEEcCCcccEEEEEEeCCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEECCCEEEEEeCCC
Confidence 1 1222 234678888876555666554 45899999986654321111 13456778888899999999888
Q ss_pred cEEEEEEeccCCeEEEE---eccCCCcceeeeec
Q psy92 388 SIALLRYQPEYRTLSLV---ARDYKPTQPNSKGY 418 (638)
Q Consensus 388 Sv~ll~~~~~~~~l~~~---arD~~~~~v~~~~~ 418 (638)
.|.++..... ..+..+ ......-.++++.|
T Consensus 383 ~v~iwd~~~~-~~~~~~~~~~~~~~~~~v~~~~~ 415 (445)
T 2ovr_B 383 TVKLWDLKTG-EFIRNLVTLESGGSGGVVWRIRA 415 (445)
T ss_dssp EEEEEETTTC-CEEEEEEECTTGGGTCEEEEEEE
T ss_pred eEEEEECCCC-ceeeeeeccccCCCCceEEEEEe
Confidence 8888765432 223223 12233445666666
No 26
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=97.11 E-value=0.19 Score=50.88 Aligned_cols=145 Identities=16% Similarity=0.153 Sum_probs=94.8
Q ss_pred ccEEEEeecccCCCCcccceeEEEEEEEEeecCCCCccccCceEEEEEE-eeCCceEEEccc-cCe-eEEEe-cCEEEEE
Q psy92 276 RGYIALGTNYNYSEDVTCRGRILLFDIIEVVPEPGQPLTKNKIKMIYAK-EQKGPVTAICHV-AGF-LVTAV-GQKIYIW 351 (638)
Q Consensus 276 ~~~ivVGT~~~~~ed~~~~GrI~vf~i~~vvpe~g~~~t~~kLkl~~~~-~~~G~V~al~~~-~g~-Ll~av-g~~l~v~ 351 (638)
..++++|+ ..|.|.+|++.. .+++.+... ...++|++++-. +|. |+++. ..+|++|
T Consensus 20 ~~~l~~~~---------~d~~v~i~~~~~-----------~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vw 79 (372)
T 1k8k_C 20 RTQIAICP---------NNHEVHIYEKSG-----------NKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVW 79 (372)
T ss_dssp SSEEEEEC---------SSSEEEEEEEET-----------TEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEE
T ss_pred CCEEEEEe---------CCCEEEEEeCCC-----------CcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEE
Confidence 47899887 578999999863 244444433 357899998743 444 44443 3589999
Q ss_pred EeeCCceeeeEE-eecceeEEEEee--ecCEEEEeeccCcEEEEEEeccCCe-EEEEeccCCCcceeeeecccCCCCCcc
Q psy92 352 QLKDNDLTGIAF-IDTEVYIASMVS--VKNLILVGDYARSIALLRYQPEYRT-LSLVARDYKPTQPNSKGYYAGNPSRGI 427 (638)
Q Consensus 352 ~l~~~~L~~~a~-~d~~~~i~~i~~--~~~~IlvgD~~~Sv~ll~~~~~~~~-l~~~arD~~~~~v~~~~~l~~~~~~~~ 427 (638)
++...++..... ......+.++.. .++++++|+.-..+.++.++..... +...-.......++++.|-
T Consensus 80 d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~-------- 151 (372)
T 1k8k_C 80 TLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWH-------- 151 (372)
T ss_dssp EEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEEC--------
T ss_pred ECCCCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEc--------
Confidence 998776544332 233445666654 4679999999899999888765432 2222223334567777774
Q ss_pred cccccceeeeeeccccccccccccCCcccccccCCCceeEEEEeCCCcEEEEEeC
Q psy92 428 IDGSLVWKFLQLSLGERLEICKKIGSKHNDILDEFSSMGFMISDKDKNVVLFMYQ 482 (638)
Q Consensus 428 vd~~~~~~~~~~~~gd~~~~~~r~~~~~~~~~~~~~~l~~l~aD~~~nl~v~~~~ 482 (638)
.| +. .++++..++.+.++...
T Consensus 152 ~~--------------------------------~~--~l~~~~~dg~i~~~d~~ 172 (372)
T 1k8k_C 152 PN--------------------------------SV--LLAAGSCDFKCRIFSAY 172 (372)
T ss_dssp TT--------------------------------SS--EEEEEETTSCEEEEECC
T ss_pred CC--------------------------------CC--EEEEEcCCCCEEEEEcc
Confidence 23 32 47788889999999864
No 27
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=97.11 E-value=0.032 Score=56.25 Aligned_cols=144 Identities=17% Similarity=0.186 Sum_probs=89.7
Q ss_pred cc-EEEEeecccCCCCcccceeEEEEEE-EEeecCCCCccccCceEEEEEEeeCCceEEEccc-cCeeEEEe-cCEEEEE
Q psy92 276 RG-YIALGTNYNYSEDVTCRGRILLFDI-IEVVPEPGQPLTKNKIKMIYAKEQKGPVTAICHV-AGFLVTAV-GQKIYIW 351 (638)
Q Consensus 276 ~~-~ivVGT~~~~~ed~~~~GrI~vf~i-~~vvpe~g~~~t~~kLkl~~~~~~~G~V~al~~~-~g~Ll~av-g~~l~v~ 351 (638)
.. ++++|+ ..|.|++|++ .. .+...+......++|++++-. ++.|+++. ...|++|
T Consensus 68 ~~~~l~~~~---------~dg~i~~wd~~~~-----------~~~~~~~~~~~~~~v~~l~~~~~~~l~s~~~d~~i~iw 127 (342)
T 1yfq_A 68 TDLQIYVGT---------VQGEILKVDLIGS-----------PSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVI 127 (342)
T ss_dssp SSEEEEEEE---------TTSCEEEECSSSS-----------SSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEE
T ss_pred CCcEEEEEc---------CCCeEEEEEeccC-----------CceEeccccCCCCceEEEEeCCCCEEEEEcCCCeEEEE
Confidence 46 888887 6789999986 42 123222111156788888633 45555553 4589999
Q ss_pred EeeC---------CceeeeEEeecceeEEEEeeecCEEEEeeccCcEEEEEEec-cCCeEEEEeccCCCcceeeeecccC
Q psy92 352 QLKD---------NDLTGIAFIDTEVYIASMVSVKNLILVGDYARSIALLRYQP-EYRTLSLVARDYKPTQPNSKGYYAG 421 (638)
Q Consensus 352 ~l~~---------~~L~~~a~~d~~~~i~~i~~~~~~IlvgD~~~Sv~ll~~~~-~~~~l~~~arD~~~~~v~~~~~l~~ 421 (638)
++.. .+.. ..+.....+.++...++.+++|..-..|.++..+. ........ .......+.++.+.
T Consensus 128 d~~~~~~~~~~~~~~~~--~~~~~~~~v~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~-~~~~~~~i~~i~~~-- 202 (342)
T 1yfq_A 128 DPRNYGDGVIAVKNLNS--NNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIE-ESGLKYQIRDVALL-- 202 (342)
T ss_dssp CHHHHTTBCEEEEESCS--SSSSSCCCEEEEEECSSEEEEEESTTEEEEEESSCCTTCCCEEE-ECSCSSCEEEEEEC--
T ss_pred cccccccccccccCCee--eEEeeCCceEEEEecCCcEEEEeCCCeEEEEECCccccccceee-ecCCCCceeEEEEC--
Confidence 9875 3322 12234566778888888899998888888877654 22212221 12233456676664
Q ss_pred CCCCccc-ccccceeeeeeccccccccccccCCcccccccCCCceeEEEEeCCCcEEEEEeCCC
Q psy92 422 NPSRGII-DGSLVWKFLQLSLGERLEICKKIGSKHNDILDEFSSMGFMISDKDKNVVLFMYQPE 484 (638)
Q Consensus 422 ~~~~~~v-d~~~~~~~~~~~~gd~~~~~~r~~~~~~~~~~~~~~l~~l~aD~~~nl~v~~~~~~ 484 (638)
. | +. .++++..+|.+.++.++..
T Consensus 203 ------~~~--------------------------------~~--~l~~~~~dg~i~i~~~~~~ 226 (342)
T 1yfq_A 203 ------PKE--------------------------------QE--GYACSSIDGRVAVEFFDDQ 226 (342)
T ss_dssp ------SGG--------------------------------GC--EEEEEETTSEEEEEECCTT
T ss_pred ------CCC--------------------------------CC--EEEEEecCCcEEEEEEcCC
Confidence 3 3 22 4778888999999888764
No 28
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=97.09 E-value=0.34 Score=49.79 Aligned_cols=131 Identities=11% Similarity=0.105 Sum_probs=76.2
Q ss_pred cEEEEEeCCCceeecceeecCCCceeEeEEEEEEeeccCccCCcccEEEEeecccCCCCcccceeEEEEEEEEeecCCCC
Q psy92 232 FHVSLFSPFSWEEIPQTNFPLHEWEHVLCLKNVSMEYEGTLSGLRGYIALGTNYNYSEDVTCRGRILLFDIIEVVPEPGQ 311 (638)
Q Consensus 232 ~~i~lid~~t~~~i~~~~~~l~~~E~v~si~~v~l~~~~~~~~~~~~ivVGT~~~~~ed~~~~GrI~vf~i~~vvpe~g~ 311 (638)
+.+.++|..+.+.+. .+.-. ...+.++ .+.. ...++++|+ ..|.|.+|++.. +
T Consensus 227 g~i~~~d~~~~~~~~--~~~~~-~~~i~~~---~~~~------~~~~l~~~~---------~d~~i~i~d~~~-----~- 279 (425)
T 1r5m_A 227 GAIFVYQITEKTPTG--KLIGH-HGPISVL---EFND------TNKLLLSAS---------DDGTLRIWHGGN-----G- 279 (425)
T ss_dssp GCEEEEETTCSSCSE--EECCC-SSCEEEE---EEET------TTTEEEEEE---------TTSCEEEECSSS-----B-
T ss_pred CeEEEEEcCCCceee--eeccC-CCceEEE---EECC------CCCEEEEEc---------CCCEEEEEECCC-----C-
Confidence 346677766554432 22222 2334444 3332 235888887 678999998643 1
Q ss_pred ccccCceEEEEEEeeCCceEEEccc-cCeeEEE-ecCEEEEEEeeCCceeeeEEeecceeEEEEee--ecCEEEEeeccC
Q psy92 312 PLTKNKIKMIYAKEQKGPVTAICHV-AGFLVTA-VGQKIYIWQLKDNDLTGIAFIDTEVYIASMVS--VKNLILVGDYAR 387 (638)
Q Consensus 312 ~~t~~kLkl~~~~~~~G~V~al~~~-~g~Ll~a-vg~~l~v~~l~~~~L~~~a~~d~~~~i~~i~~--~~~~IlvgD~~~ 387 (638)
..+..+ ....++|++++-. +|.|+++ ....|++|++...+....-. .....+.++.. .++++++|..-.
T Consensus 280 ----~~~~~~--~~~~~~i~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~i~~~~~s~~~~~l~~~~~dg 352 (425)
T 1r5m_A 280 ----NSQNCF--YGHSQSIVSASWVGDDKVISCSMDGSVRLWSLKQNTLLALSI-VDGVPIFAGRISQDGQKYAVAFMDG 352 (425)
T ss_dssp ----SCSEEE--CCCSSCEEEEEEETTTEEEEEETTSEEEEEETTTTEEEEEEE-CTTCCEEEEEECTTSSEEEEEETTS
T ss_pred ----ccceEe--cCCCccEEEEEECCCCEEEEEeCCCcEEEEECCCCcEeEecc-cCCccEEEEEEcCCCCEEEEEECCC
Confidence 112211 2356888888754 3455544 34589999998665433221 12345555554 468999999888
Q ss_pred cEEEEEEec
Q psy92 388 SIALLRYQP 396 (638)
Q Consensus 388 Sv~ll~~~~ 396 (638)
.|.++..+.
T Consensus 353 ~i~i~~~~~ 361 (425)
T 1r5m_A 353 QVNVYDLKK 361 (425)
T ss_dssp CEEEEECHH
T ss_pred eEEEEECCC
Confidence 888887654
No 29
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=97.08 E-value=0.26 Score=48.74 Aligned_cols=153 Identities=10% Similarity=0.067 Sum_probs=86.4
Q ss_pred ccEEEEeecccCCCCcccceeEEEEEEEEeecCCCCccccCceEEEEEE-eeCCceEEEcccc---Ce-eEEEe-cCEEE
Q psy92 276 RGYIALGTNYNYSEDVTCRGRILLFDIIEVVPEPGQPLTKNKIKMIYAK-EQKGPVTAICHVA---GF-LVTAV-GQKIY 349 (638)
Q Consensus 276 ~~~ivVGT~~~~~ed~~~~GrI~vf~i~~vvpe~g~~~t~~kLkl~~~~-~~~G~V~al~~~~---g~-Ll~av-g~~l~ 349 (638)
..+|+.|+ ..|.|.+|++... .......+.+.+... ...++|++++-.. +. |+++. ..+|+
T Consensus 71 ~~~l~s~~---------~dg~v~vwd~~~~----~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~ 137 (351)
T 3f3f_A 71 GRIIASAS---------YDKTVKLWEEDPD----QEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILR 137 (351)
T ss_dssp CSEEEEEE---------TTSCEEEEEECTT----SCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEE
T ss_pred CCEEEEEc---------CCCeEEEEecCCC----cccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEE
Confidence 47888887 6789999998641 111112344555444 3578999997442 44 44443 45899
Q ss_pred EEEeeCCceeee-E---Ee--------ecceeEEEEee-----ecCEEEEeeccCcEEEEEEeccCCeEEEEec-cCCCc
Q psy92 350 IWQLKDNDLTGI-A---FI--------DTEVYIASMVS-----VKNLILVGDYARSIALLRYQPEYRTLSLVAR-DYKPT 411 (638)
Q Consensus 350 v~~l~~~~L~~~-a---~~--------d~~~~i~~i~~-----~~~~IlvgD~~~Sv~ll~~~~~~~~l~~~ar-D~~~~ 411 (638)
+|++...+.... . .. .....+.++.. .++++++|..-..+ ++... ...++..+.. .....
T Consensus 138 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~-~~~~~-~~~~~~~~~~~~~h~~ 215 (351)
T 3f3f_A 138 LYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAI-IYQRG-KDGKLHVAAKLPGHKS 215 (351)
T ss_dssp EEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEE-EEEEC-TTSCEEEEEECCCCCS
T ss_pred EecCCChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcE-EEEcc-CCCceeeeeecCCCCc
Confidence 999985542211 1 00 01112233332 26788888887776 33332 3333322222 23455
Q ss_pred ceeeeecccCCCCCcccccccceeeeeeccccccccccccCCcccccccCCCc--eeEEEEeCCCcEEEEEeCC
Q psy92 412 QPNSKGYYAGNPSRGIIDGSLVWKFLQLSLGERLEICKKIGSKHNDILDEFSS--MGFMISDKDKNVVLFMYQP 483 (638)
Q Consensus 412 ~v~~~~~l~~~~~~~~vd~~~~~~~~~~~~gd~~~~~~r~~~~~~~~~~~~~~--l~~l~aD~~~nl~v~~~~~ 483 (638)
.++++.|- .+ +.. -.++.+..+|.+.++....
T Consensus 216 ~i~~~~~~--------p~--------------------------------~~~~~~~l~s~~~dg~i~iwd~~~ 249 (351)
T 3f3f_A 216 LIRSISWA--------PS--------------------------------IGRWYQLIATGCKDGRIRIFKITE 249 (351)
T ss_dssp CEEEEEEC--------CC--------------------------------SSCSSEEEEEEETTSCEEEEEEEE
T ss_pred ceeEEEEC--------CC--------------------------------CCCcceEEEEEcCCCeEEEEeCCC
Confidence 67787774 23 210 2478888999999998764
No 30
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=97.06 E-value=0.26 Score=49.84 Aligned_cols=205 Identities=15% Similarity=0.180 Sum_probs=114.6
Q ss_pred ccEEEEeecccCCCCcccceeEEEEEEEEeecCCCCccccCceEEEEEE-eeCCceEEEccc-c--CeeEEEec--CEEE
Q psy92 276 RGYIALGTNYNYSEDVTCRGRILLFDIIEVVPEPGQPLTKNKIKMIYAK-EQKGPVTAICHV-A--GFLVTAVG--QKIY 349 (638)
Q Consensus 276 ~~~ivVGT~~~~~ed~~~~GrI~vf~i~~vvpe~g~~~t~~kLkl~~~~-~~~G~V~al~~~-~--g~Ll~avg--~~l~ 349 (638)
..+|++|+ ..|.|.+|++.. ...+.+... ...++|++++-. . +.++++.+ ..|+
T Consensus 23 ~~~l~~~~---------~dg~i~iw~~~~-----------~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~ 82 (379)
T 3jrp_A 23 GKRLATCS---------SDKTIKIFEVEG-----------ETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVL 82 (379)
T ss_dssp SSEEEEEE---------TTSCEEEEEEET-----------TEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEE
T ss_pred CCEEEEEE---------CCCcEEEEecCC-----------CcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEE
Confidence 47899887 678999999862 123333332 357899999743 2 44444433 5899
Q ss_pred EEEeeCCceeeeEEee-cceeEEEEeee----cCEEEEeeccCcEEEEEEeccCC-eEEEEeccCCCcceeeeecccCCC
Q psy92 350 IWQLKDNDLTGIAFID-TEVYIASMVSV----KNLILVGDYARSIALLRYQPEYR-TLSLVARDYKPTQPNSKGYYAGNP 423 (638)
Q Consensus 350 v~~l~~~~L~~~a~~d-~~~~i~~i~~~----~~~IlvgD~~~Sv~ll~~~~~~~-~l~~~arD~~~~~v~~~~~l~~~~ 423 (638)
+|++...+......+. ....+.++... ++++++|..-..|.++..+.... ....+ ......++++.+-
T Consensus 83 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~--~~~~~~v~~~~~~---- 156 (379)
T 3jrp_A 83 IWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIII--DAHAIGVNSASWA---- 156 (379)
T ss_dssp EEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEE--ECCTTCEEEEEEC----
T ss_pred EEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEe--cCCCCceEEEEEc----
Confidence 9999987654444433 33456666644 67999999999998887755422 11111 2334456676663
Q ss_pred CCcccccccceeeeeeccccccccccccCCcccccccCCCceeEEEEeCCCcEEEEEeCCCCcCCCCCceEEEEeeee-c
Q psy92 424 SRGIIDGSLVWKFLQLSLGERLEICKKIGSKHNDILDEFSSMGFMISDKDKNVVLFMYQPEARESNGGHRLIKKTDFH-L 502 (638)
Q Consensus 424 ~~~~vd~~~~~~~~~~~~gd~~~~~~r~~~~~~~~~~~~~~l~~l~aD~~~nl~v~~~~~~~~~s~~~~~L~~~~~f~-l 502 (638)
.+ +... .+..... .+.. .++++..++.+.++...... ........+. .
T Consensus 157 ----~~--------~~~~---~~~~~~~---------~~~~-~l~~~~~dg~i~i~d~~~~~------~~~~~~~~~~~h 205 (379)
T 3jrp_A 157 ----PA--------TIEE---DGEHNGT---------KESR-KFVTGGADNLVKIWKYNSDA------QTYVLESTLEGH 205 (379)
T ss_dssp ----CC--------C----------------------CTTC-EEEEEETTSCEEEEEEETTT------TEEEEEEEECCC
T ss_pred ----Cc--------cccc---cccccCC---------CCCC-EEEEEeCCCeEEEEEecCCC------cceeeEEEEecc
Confidence 11 0000 0000000 0122 47888899999999875421 1222222222 1
Q ss_pred CcceeeEEEEeccCCCCCCCCCCCCceEEEEEeCCCcEEEEEeCC
Q psy92 503 GQHVNTFFKIRCKPSSISDAPGARSRFLTWYASLDGALGFFLPLP 547 (638)
Q Consensus 503 g~~v~~~~~~~~~~~~~~~~~~~~~~~~il~~t~~GsIg~l~pl~ 547 (638)
...|+++.-.+. ......++.++.+|.|-+.-.-.
T Consensus 206 ~~~v~~~~~sp~----------~~~~~~l~s~~~dg~i~iwd~~~ 240 (379)
T 3jrp_A 206 SDWVRDVAWSPT----------VLLRSYLASVSQDRTCIIWTQDN 240 (379)
T ss_dssp SSCEEEEEECCC----------CSSSEEEEEEETTSCEEEEEESS
T ss_pred cCcEeEEEECCC----------CCCCCeEEEEeCCCEEEEEeCCC
Confidence 334555432210 00135688888999987775543
No 31
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=97.03 E-value=0.37 Score=49.18 Aligned_cols=171 Identities=14% Similarity=0.095 Sum_probs=97.5
Q ss_pred cceeEEEEEEEEeecCCCCccccCceEEEEE-EeeCCceEEEccc-cCeeEEEe--cCEEEEEEeeCCceeeeEEeecce
Q psy92 293 CRGRILLFDIIEVVPEPGQPLTKNKIKMIYA-KEQKGPVTAICHV-AGFLVTAV--GQKIYIWQLKDNDLTGIAFIDTEV 368 (638)
Q Consensus 293 ~~GrI~vf~i~~vvpe~g~~~t~~kLkl~~~-~~~~G~V~al~~~-~g~Ll~av--g~~l~v~~l~~~~L~~~a~~d~~~ 368 (638)
..|.|.+|++.. .+ .+.. ....++|++++-. +|.++++. ..+|++|++...+.... +.....
T Consensus 162 ~d~~i~~wd~~~-----------~~--~~~~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~-~~~h~~ 227 (340)
T 1got_B 162 GDTTCALWDIET-----------GQ--QTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQT-FTGHES 227 (340)
T ss_dssp TTSCEEEEETTT-----------TE--EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEE-ECCCSS
T ss_pred CCCcEEEEECCC-----------Cc--EEEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCeeEEE-EcCCcC
Confidence 578899998632 11 1222 2357889998643 45554443 45899999986654321 112233
Q ss_pred eEEEEee--ecCEEEEeeccCcEEEEEEeccCCeEEEEeccCCCcceeeeecccCCCCCcccccccceeeeeeccccccc
Q psy92 369 YIASMVS--VKNLILVGDYARSIALLRYQPEYRTLSLVARDYKPTQPNSKGYYAGNPSRGIIDGSLVWKFLQLSLGERLE 446 (638)
Q Consensus 369 ~i~~i~~--~~~~IlvgD~~~Sv~ll~~~~~~~~l~~~arD~~~~~v~~~~~l~~~~~~~~vd~~~~~~~~~~~~gd~~~ 446 (638)
.|.++.. .+++++.|..-..|.++..+.. ..+..+..+.....++++.|- .|
T Consensus 228 ~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~-~~~~~~~~~~~~~~v~~~~~s--------~~----------------- 281 (340)
T 1got_B 228 DINAICFFPNGNAFATGSDDATCRLFDLRAD-QELMTYSHDNIICGITSVSFS--------KS----------------- 281 (340)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEETTTT-EEEEEECCTTCCSCEEEEEEC--------TT-----------------
T ss_pred CEEEEEEcCCCCEEEEEcCCCcEEEEECCCC-cEEEEEccCCcccceEEEEEC--------CC-----------------
Confidence 4555554 4679999988888887654332 223333333333457777774 33
Q ss_pred cccccCCcccccccCCCceeEEEEeCCCcEEEEEeCCCCcCCCCCceEEEEeeeecCcceeeEEEEeccCCCCCCCCCCC
Q psy92 447 ICKKIGSKHNDILDEFSSMGFMISDKDKNVVLFMYQPEARESNGGHRLIKKTDFHLGQHVNTFFKIRCKPSSISDAPGAR 526 (638)
Q Consensus 447 ~~~r~~~~~~~~~~~~~~l~~l~aD~~~nl~v~~~~~~~~~s~~~~~L~~~~~f~lg~~v~~~~~~~~~~~~~~~~~~~~ 526 (638)
+. .++++..++++.++..... ..+... .-| ...|+++.-. .
T Consensus 282 ---------------g~--~l~~g~~d~~i~vwd~~~~-------~~~~~~-~~h-~~~v~~~~~s------------~- 322 (340)
T 1got_B 282 ---------------GR--LLLAGYDDFNCNVWDALKA-------DRAGVL-AGH-DNRVSCLGVT------------D- 322 (340)
T ss_dssp ---------------SS--EEEEEETTSEEEEEETTTC-------CEEEEE-ECC-SSCEEEEEEC------------T-
T ss_pred ---------------CC--EEEEECCCCeEEEEEcccC-------cEeeEe-ecC-CCcEEEEEEc------------C-
Confidence 32 4778889999999975431 222111 112 2345544221 1
Q ss_pred CceEEEEEeCCCcEEE
Q psy92 527 SRFLTWYASLDGALGF 542 (638)
Q Consensus 527 ~~~~il~~t~~GsIg~ 542 (638)
....++.++.||.|-+
T Consensus 323 dg~~l~s~s~D~~i~i 338 (340)
T 1got_B 323 DGMAVATGSWDSFLKI 338 (340)
T ss_dssp TSSCEEEEETTSCEEE
T ss_pred CCCEEEEEcCCccEEe
Confidence 1235778889998854
No 32
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=97.00 E-value=0.47 Score=49.98 Aligned_cols=255 Identities=11% Similarity=0.131 Sum_probs=137.9
Q ss_pred EcCCeEEEEEeCCCCCCCCCceeEEEeCC-CcccEEEEecCCCEEEEEEeeecCCCcccccCCccccccCCCCCCCCCCC
Q psy92 149 NAKSELRISVLPTHLSYDAPWPVRKVPLK-CTPHFLAYHLETKTYCIVTSTAEPSTDYYKFNGEDKELVTDPRDSRFIPP 227 (638)
Q Consensus 149 ~~~~~L~I~~l~~~~~~~~~~~~r~ipL~-~tp~ri~y~~~~~~~~V~~s~~~~~~~~~~~~~e~~e~~~~~~~~~~~~p 227 (638)
..++.++|-.+.+. -..+++.-. ..+..++++|..+.++.+..+
T Consensus 127 s~Dg~i~vwd~~~~------~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D----------------------------- 171 (410)
T 1vyh_C 127 SEDATIKVWDYETG------DFERTLKGHTDSVQDISFDHSGKLLASCSAD----------------------------- 171 (410)
T ss_dssp ESSSCEEEEETTTC------CCCEEECCCSSCEEEEEECTTSSEEEEEETT-----------------------------
T ss_pred eCCCeEEEEECCCC------cEEEEEeccCCcEEEEEEcCCCCEEEEEeCC-----------------------------
Confidence 35788888877653 233444433 356788898877655433211
Q ss_pred cccccEEEEEeCCCceeecceeecCCCceeEeEEEEEEeeccCccCCcccEEEEeecccCCCCcccceeEEEEEEEEeec
Q psy92 228 LVSQFHVSLFSPFSWEEIPQTNFPLHEWEHVLCLKNVSMEYEGTLSGLRGYIALGTNYNYSEDVTCRGRILLFDIIEVVP 307 (638)
Q Consensus 228 ~~~~~~i~lid~~t~~~i~~~~~~l~~~E~v~si~~v~l~~~~~~~~~~~~ivVGT~~~~~ed~~~~GrI~vf~i~~vvp 307 (638)
..|++.|..+++.+. .+.-.. ..|.|+ .+.. ...+++.|. ..|.|.+|++..
T Consensus 172 ----~~i~iwd~~~~~~~~--~~~~h~-~~V~~v---~~~p------~~~~l~s~s---------~D~~i~~wd~~~--- 223 (410)
T 1vyh_C 172 ----MTIKLWDFQGFECIR--TMHGHD-HNVSSV---SIMP------NGDHIVSAS---------RDKTIKMWEVQT--- 223 (410)
T ss_dssp ----SCCCEEETTSSCEEE--CCCCCS-SCEEEE---EECS------SSSEEEEEE---------TTSEEEEEETTT---
T ss_pred ----CeEEEEeCCCCceeE--EEcCCC-CCEEEE---EEeC------CCCEEEEEe---------CCCeEEEEECCC---
Confidence 124555555555443 222111 234443 4432 246788887 678999998642
Q ss_pred CCCCccccCceEEEEEEeeCCceEEEcc-ccCeeEEEe--cCEEEEEEeeCCceeeeEEeecceeEEEEeee--------
Q psy92 308 EPGQPLTKNKIKMIYAKEQKGPVTAICH-VAGFLVTAV--GQKIYIWQLKDNDLTGIAFIDTEVYIASMVSV-------- 376 (638)
Q Consensus 308 e~g~~~t~~kLkl~~~~~~~G~V~al~~-~~g~Ll~av--g~~l~v~~l~~~~L~~~a~~d~~~~i~~i~~~-------- 376 (638)
+ ..++.+ ....+.|.+++. -+|.++++. ..+|++|++...+.... +......+.++...
T Consensus 224 --~-----~~~~~~--~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~~~~-~~~h~~~v~~~~~~~~~~~~~~ 293 (410)
T 1vyh_C 224 --G-----YCVKTF--TGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAE-LREHRHVVECISWAPESSYSSI 293 (410)
T ss_dssp --C-----CEEEEE--ECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEE-ECCCSSCEEEEEECCSCGGGGG
T ss_pred --C-----cEEEEE--eCCCccEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeE-ecCCCceEEEEEEcCcccccch
Confidence 1 122221 234677888763 345555444 35899999976553221 11122233443321
Q ss_pred --------------cCEEEEeeccCcEEEEEEeccCCeEEEEeccCCCcceeeeecccCCCCCcccccccceeeeeeccc
Q psy92 377 --------------KNLILVGDYARSIALLRYQPEYRTLSLVARDYKPTQPNSKGYYAGNPSRGIIDGSLVWKFLQLSLG 442 (638)
Q Consensus 377 --------------~~~IlvgD~~~Sv~ll~~~~~~~~l~~~arD~~~~~v~~~~~l~~~~~~~~vd~~~~~~~~~~~~g 442 (638)
+.+++.|..-..|.++..+ ..+....-. ....+++++.|- .+
T Consensus 294 ~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~--~~~~~~~~~-~h~~~v~~v~~~--------~~------------- 349 (410)
T 1vyh_C 294 SEATGSETKKSGKPGPFLLSGSRDKTIKMWDVS--TGMCLMTLV-GHDNWVRGVLFH--------SG------------- 349 (410)
T ss_dssp GGCCSCC-------CCEEEEEETTSEEEEEETT--TTEEEEEEE-CCSSCEEEEEEC--------SS-------------
T ss_pred hhhccccccccCCCCCEEEEEeCCCeEEEEECC--CCceEEEEE-CCCCcEEEEEEc--------CC-------------
Confidence 5688888877777776543 232221111 234567777674 23
Q ss_pred cccccccccCCcccccccCCCceeEEEEeCCCcEEEEEeCCCCcCCCCCceEEEEeeeecCcceeeEEEEeccCCCCCCC
Q psy92 443 ERLEICKKIGSKHNDILDEFSSMGFMISDKDKNVVLFMYQPEARESNGGHRLIKKTDFHLGQHVNTFFKIRCKPSSISDA 522 (638)
Q Consensus 443 d~~~~~~r~~~~~~~~~~~~~~l~~l~aD~~~nl~v~~~~~~~~~s~~~~~L~~~~~f~lg~~v~~~~~~~~~~~~~~~~ 522 (638)
+. .++.+..++.+.++..... ..+ ..-..| ...|+++.-.+
T Consensus 350 -------------------g~--~l~s~s~D~~i~vwd~~~~-------~~~-~~~~~h-~~~v~~l~~~~--------- 390 (410)
T 1vyh_C 350 -------------------GK--FILSCADDKTLRVWDYKNK-------RCM-KTLNAH-EHFVTSLDFHK--------- 390 (410)
T ss_dssp -------------------SS--CEEEEETTTEEEEECCTTS-------CCC-EEEECC-SSCEEEEEECS---------
T ss_pred -------------------CC--EEEEEeCCCeEEEEECCCC-------ceE-EEEcCC-CCcEEEEEEcC---------
Confidence 33 4778889999999976442 111 111222 23455553221
Q ss_pred CCCCCceEEEEEeCCCcEEEE
Q psy92 523 PGARSRFLTWYASLDGALGFF 543 (638)
Q Consensus 523 ~~~~~~~~il~~t~~GsIg~l 543 (638)
....++.|+.||.|-+.
T Consensus 391 ----~~~~l~sgs~D~~i~vW 407 (410)
T 1vyh_C 391 ----TAPYVVTGSVDQTVKVW 407 (410)
T ss_dssp ----SSSCEEEEETTSEEEEE
T ss_pred ----CCCEEEEEeCCCcEEEE
Confidence 23458889999988653
No 33
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=97.00 E-value=0.48 Score=50.08 Aligned_cols=231 Identities=11% Similarity=0.049 Sum_probs=126.9
Q ss_pred EEEEcCCeEEEEEeCCCCCCCCCceeEEEeC-CCcccEEEEecCCCEEEEEEeeecCCCcccccCCccccccCCCCCCCC
Q psy92 146 LYFNAKSELRISVLPTHLSYDAPWPVRKVPL-KCTPHFLAYHLETKTYCIVTSTAEPSTDYYKFNGEDKELVTDPRDSRF 224 (638)
Q Consensus 146 l~~~~~~~L~I~~l~~~~~~~~~~~~r~ipL-~~tp~ri~y~~~~~~~~V~~s~~~~~~~~~~~~~e~~e~~~~~~~~~~ 224 (638)
+....++.+++-.+.+. -.++.++- ...+..+++++.. +++.++.
T Consensus 136 ~sgs~dg~i~vwd~~~~------~~~~~~~~h~~~V~~l~~~~~~--~l~s~s~-------------------------- 181 (464)
T 3v7d_B 136 ITGADDKMIRVYDSINK------KFLLQLSGHDGGVWALKYAHGG--ILVSGST-------------------------- 181 (464)
T ss_dssp EEEETTSCEEEEETTTT------EEEEEECCCSSCEEEEEECSTT--EEEEEET--------------------------
T ss_pred EEEcCCCcEEEEECCCC------cEEEEEeCCCcCEEEEEEcCCC--EEEEEeC--------------------------
Confidence 33345678888776552 23444442 2356777887655 3332221
Q ss_pred CCCcccccEEEEEeCCCceeecceeecCCCceeEeEEEEEEeeccCccCCcccEEEEeecccCCCCcccceeEEEEEEEE
Q psy92 225 IPPLVSQFHVSLFSPFSWEEIPQTNFPLHEWEHVLCLKNVSMEYEGTLSGLRGYIALGTNYNYSEDVTCRGRILLFDIIE 304 (638)
Q Consensus 225 ~~p~~~~~~i~lid~~t~~~i~~~~~~l~~~E~v~si~~v~l~~~~~~~~~~~~ivVGT~~~~~ed~~~~GrI~vf~i~~ 304 (638)
.+.+++.|..+.+.+. .+.- ....+.|+...... ...+++.|+ ..|.|.+|++..
T Consensus 182 ------dg~i~vwd~~~~~~~~--~~~~-h~~~v~~l~~~~~~-------~~~~l~s~s---------~d~~i~vwd~~~ 236 (464)
T 3v7d_B 182 ------DRTVRVWDIKKGCCTH--VFEG-HNSTVRCLDIVEYK-------NIKYIVTGS---------RDNTLHVWKLPK 236 (464)
T ss_dssp ------TSCEEEEETTTTEEEE--EECC-CSSCEEEEEEEESS-------SCEEEEEEE---------TTSCEEEEECCC
T ss_pred ------CCCEEEEECCCCcEEE--EECC-CCCccEEEEEecCC-------CCCEEEEEc---------CCCcEEEeeCCC
Confidence 1246777766666543 3332 23456666543221 247888887 678999998864
Q ss_pred eecCCCCcc-c----------cCceEEEEEEeeCCceEEEccccCeeEEEe-cCEEEEEEeeCCceeeeEEeecceeEEE
Q psy92 305 VVPEPGQPL-T----------KNKIKMIYAKEQKGPVTAICHVAGFLVTAV-GQKIYIWQLKDNDLTGIAFIDTEVYIAS 372 (638)
Q Consensus 305 vvpe~g~~~-t----------~~kLkl~~~~~~~G~V~al~~~~g~Ll~av-g~~l~v~~l~~~~L~~~a~~d~~~~i~~ 372 (638)
....+.... . ....-+.......++|.++..-+.+|+++. ..+|++|++...+.... +......+.+
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~-~~~~~~~v~~ 315 (464)
T 3v7d_B 237 ESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYI-LSGHTDRIYS 315 (464)
T ss_dssp CCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEE-ECCCSSCEEE
T ss_pred CcccccccccCCcceEeeccCCCeEEEEEccCccceEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEE-ecCCCCCEEE
Confidence 211100000 0 000011122345688889876666666664 45899999986553321 1112334555
Q ss_pred Eee--ecCEEEEeeccCcEEEEEEeccCCeEEEEeccCCCcceeeeecccCCCCCcccccccceeeeeeccccccccccc
Q psy92 373 MVS--VKNLILVGDYARSIALLRYQPEYRTLSLVARDYKPTQPNSKGYYAGNPSRGIIDGSLVWKFLQLSLGERLEICKK 450 (638)
Q Consensus 373 i~~--~~~~IlvgD~~~Sv~ll~~~~~~~~l~~~arD~~~~~v~~~~~l~~~~~~~~vd~~~~~~~~~~~~gd~~~~~~r 450 (638)
+.. .++++++|..-..|.++..+ ..+....-+ .....++++.+ +
T Consensus 316 ~~~~~~~~~l~sg~~dg~i~vwd~~--~~~~~~~~~-~h~~~v~~~~~----------~--------------------- 361 (464)
T 3v7d_B 316 TIYDHERKRCISASMDTTIRIWDLE--NGELMYTLQ-GHTALVGLLRL----------S--------------------- 361 (464)
T ss_dssp EEEETTTTEEEEEETTSCEEEEETT--TTEEEEEEC-CCSSCEEEEEE----------C---------------------
T ss_pred EEEcCCCCEEEEEeCCCcEEEEECC--CCcEEEEEe-CCCCcEEEEEE----------c---------------------
Confidence 554 46799999988888776543 333322221 23344555544 2
Q ss_pred cCCcccccccCCCceeEEEEeCCCcEEEEEeCC
Q psy92 451 IGSKHNDILDEFSSMGFMISDKDKNVVLFMYQP 483 (638)
Q Consensus 451 ~~~~~~~~~~~~~~l~~l~aD~~~nl~v~~~~~ 483 (638)
+. .++++..+|.+.++....
T Consensus 362 -----------~~--~l~s~s~dg~v~vwd~~~ 381 (464)
T 3v7d_B 362 -----------DK--FLVSAAADGSIRGWDAND 381 (464)
T ss_dssp -----------SS--EEEEEETTSEEEEEETTT
T ss_pred -----------CC--EEEEEeCCCcEEEEECCC
Confidence 22 478888999999987643
No 34
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=97.00 E-value=0.29 Score=50.56 Aligned_cols=203 Identities=10% Similarity=0.011 Sum_probs=110.4
Q ss_pred EEEEEcCCeEEEEEeCCCCCCCCCceeEEEeC---CCcccEEEEecCCCEEEEEEeeecCCCcccccCCccccccCCCCC
Q psy92 145 FLYFNAKSELRISVLPTHLSYDAPWPVRKVPL---KCTPHFLAYHLETKTYCIVTSTAEPSTDYYKFNGEDKELVTDPRD 221 (638)
Q Consensus 145 fl~~~~~~~L~I~~l~~~~~~~~~~~~r~ipL---~~tp~ri~y~~~~~~~~V~~s~~~~~~~~~~~~~e~~e~~~~~~~ 221 (638)
++.-..++.++|-.+.+.. .....+..+ ....+.|+++|..+.++.+. .
T Consensus 96 l~~~s~dg~v~lWd~~~~~----~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs-~----------------------- 147 (344)
T 4gqb_B 96 ILVASDSGAVELWELDENE----TLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGS-K----------------------- 147 (344)
T ss_dssp EEEEETTSEEEEEEECTTS----SCEEEEEEEECCSSCEEEEEECTTSSEEEEEE-T-----------------------
T ss_pred EEEEECCCEEEEEeccCCC----ceeEeeccccCCCCCEEEEEECCCCCEEEEEe-C-----------------------
Confidence 4444567888888877632 233333333 23578888998777655332 1
Q ss_pred CCCCCCcccccEEEEEeCCCceeecceeecCCCceeEeEEEEEEeeccCccCCcccEEEEeecccCCCCcccceeEEEEE
Q psy92 222 SRFIPPLVSQFHVSLFSPFSWEEIPQTNFPLHEWEHVLCLKNVSMEYEGTLSGLRGYIALGTNYNYSEDVTCRGRILLFD 301 (638)
Q Consensus 222 ~~~~~p~~~~~~i~lid~~t~~~i~~~~~~l~~~E~v~si~~v~l~~~~~~~~~~~~ivVGT~~~~~ed~~~~GrI~vf~ 301 (638)
...|++.|..+.+.+. .+.-.. ..|.|+ .+... ...+++.|. ..|.|.+|+
T Consensus 148 ---------d~~i~iwd~~~~~~~~--~~~~h~-~~V~~~---~~~~~-----~~~~l~s~s---------~D~~v~iwd 198 (344)
T 4gqb_B 148 ---------DICIKVWDLAQQVVLS--SYRAHA-AQVTCV---AASPH-----KDSVFLSCS---------EDNRILLWD 198 (344)
T ss_dssp ---------TSCEEEEETTTTEEEE--EECCCS-SCEEEE---EECSS-----CTTEEEEEE---------TTSCEEEEE
T ss_pred ---------CCeEEEEECCCCcEEE--EEcCcC-CceEEE---EecCC-----CCCceeeec---------ccccccccc
Confidence 1237777777766653 333222 234444 34321 245666665 568899998
Q ss_pred EEEeecCCCCccccCceEEEEEEeeCCceEEEcc--ccCeeEEE--ecCEEEEEEeeCCceeeeEEeecceeEEEEeee-
Q psy92 302 IIEVVPEPGQPLTKNKIKMIYAKEQKGPVTAICH--VAGFLVTA--VGQKIYIWQLKDNDLTGIAFIDTEVYIASMVSV- 376 (638)
Q Consensus 302 i~~vvpe~g~~~t~~kLkl~~~~~~~G~V~al~~--~~g~Ll~a--vg~~l~v~~l~~~~L~~~a~~d~~~~i~~i~~~- 376 (638)
+.. + ..+..+........+++++- -+++++++ ...+|++|++...+.... +......|+++...
T Consensus 199 ~~~-----~-----~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~-~~~h~~~v~~v~fsp 267 (344)
T 4gqb_B 199 TRC-----P-----KPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLS-SAVHSQCVTGLVFSP 267 (344)
T ss_dssp TTS-----S-----SCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEE-EECCSSCEEEEEECS
T ss_pred ccc-----c-----ceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEE-EcCCCCCEEEEEEcc
Confidence 642 1 12233322333456777763 35566554 345899999986654321 11123456666653
Q ss_pred -c-CEEEEeeccCcEEEEEEeccCCeEEEEeccCCCcceeeeecc
Q psy92 377 -K-NLILVGDYARSIALLRYQPEYRTLSLVARDYKPTQPNSKGYY 419 (638)
Q Consensus 377 -~-~~IlvgD~~~Sv~ll~~~~~~~~l~~~arD~~~~~v~~~~~l 419 (638)
+ .+|+.|..-..|.++ +....++..+ ......|+++.|-
T Consensus 268 ~g~~~lasgs~D~~i~vw--d~~~~~~~~~--~~H~~~V~~v~~s 308 (344)
T 4gqb_B 268 HSVPFLASLSEDCSLAVL--DSSLSELFRS--QAHRDFVRDATWS 308 (344)
T ss_dssp SSSCCEEEEETTSCEEEE--CTTCCEEEEE--CCCSSCEEEEEEC
T ss_pred CCCeEEEEEeCCCeEEEE--ECCCCcEEEE--cCCCCCEEEEEEe
Confidence 3 467777777777764 4444555433 2334568888774
No 35
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=96.97 E-value=0.37 Score=48.78 Aligned_cols=99 Identities=7% Similarity=-0.021 Sum_probs=62.7
Q ss_pred ccEEEEeecccCCCCcccceeEEEEEEEEeecCCCCccccCceEEEE-EEeeCCceEEEccc-cC-eeEEEe-cCEEEEE
Q psy92 276 RGYIALGTNYNYSEDVTCRGRILLFDIIEVVPEPGQPLTKNKIKMIY-AKEQKGPVTAICHV-AG-FLVTAV-GQKIYIW 351 (638)
Q Consensus 276 ~~~ivVGT~~~~~ed~~~~GrI~vf~i~~vvpe~g~~~t~~kLkl~~-~~~~~G~V~al~~~-~g-~Ll~av-g~~l~v~ 351 (638)
..+++.|. ..|.|.+|++.. .+++... .....++|++++-. +| +|+++. ...|++|
T Consensus 64 ~~~l~~~~---------~dg~i~vwd~~~-----------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~ 123 (372)
T 1k8k_C 64 SNRIVTCG---------TDRNAYVWTLKG-----------RTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISIC 123 (372)
T ss_dssp TTEEEEEE---------TTSCEEEEEEET-----------TEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEE
T ss_pred CCEEEEEc---------CCCeEEEEECCC-----------CeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEE
Confidence 47888887 578999999853 2333222 23457889988733 34 455544 3589999
Q ss_pred EeeCCce-e-eeEEe-ecceeEEEEeee--cCEEEEeeccCcEEEEEE
Q psy92 352 QLKDNDL-T-GIAFI-DTEVYIASMVSV--KNLILVGDYARSIALLRY 394 (638)
Q Consensus 352 ~l~~~~L-~-~~a~~-d~~~~i~~i~~~--~~~IlvgD~~~Sv~ll~~ 394 (638)
++...+- . ...+. .....+.++... ++++++|..-..+.++..
T Consensus 124 d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~ 171 (372)
T 1k8k_C 124 YFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSA 171 (372)
T ss_dssp EEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEEC
T ss_pred EecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEc
Confidence 9985541 1 11121 123456666653 679999998888888764
No 36
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=96.94 E-value=0.5 Score=49.31 Aligned_cols=141 Identities=19% Similarity=0.232 Sum_probs=83.6
Q ss_pred ccEEEEeecccCCCCcccceeEEEEEEEEeecCCCCccccCceEEEEEEeeCCceEEEccc-cC-eeEEEe-cCEEEEEE
Q psy92 276 RGYIALGTNYNYSEDVTCRGRILLFDIIEVVPEPGQPLTKNKIKMIYAKEQKGPVTAICHV-AG-FLVTAV-GQKIYIWQ 352 (638)
Q Consensus 276 ~~~ivVGT~~~~~ed~~~~GrI~vf~i~~vvpe~g~~~t~~kLkl~~~~~~~G~V~al~~~-~g-~Ll~av-g~~l~v~~ 352 (638)
..+|+.|. ..|.|.+|++.. .+.... -....++|++++-. +| +|+.|. ..+|++|+
T Consensus 135 g~~l~s~~---------~d~~i~iwd~~~-----------~~~~~~-~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd 193 (393)
T 1erj_A 135 GKFLATGA---------EDRLIRIWDIEN-----------RKIVMI-LQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWD 193 (393)
T ss_dssp SSEEEEEE---------TTSCEEEEETTT-----------TEEEEE-ECCCSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred CCEEEEEc---------CCCeEEEEECCC-----------CcEEEE-EccCCCCEEEEEEcCCCCEEEEecCCCcEEEEE
Confidence 46888887 578999998632 122111 12357889998733 33 555554 35899999
Q ss_pred eeCCceeeeEEeecceeEEEEee---ecCEEEEeeccCcEEEEEEeccCCeEE-EEec-----cCCCcceeeeecccCCC
Q psy92 353 LKDNDLTGIAFIDTEVYIASMVS---VKNLILVGDYARSIALLRYQPEYRTLS-LVAR-----DYKPTQPNSKGYYAGNP 423 (638)
Q Consensus 353 l~~~~L~~~a~~d~~~~i~~i~~---~~~~IlvgD~~~Sv~ll~~~~~~~~l~-~~ar-----D~~~~~v~~~~~l~~~~ 423 (638)
+...+....- .....+.++.. .+++|++|..-..|.++.. +..++. .+.. .....+++++.|-
T Consensus 194 ~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~--~~~~~~~~~~~~~~~~~~h~~~v~~v~~~---- 265 (393)
T 1erj_A 194 LRTGQCSLTL--SIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDS--ETGFLVERLDSENESGTGHKDSVYSVVFT---- 265 (393)
T ss_dssp TTTTEEEEEE--ECSSCEEEEEECSTTCCEEEEEETTSCEEEEET--TTCCEEEEEC------CCCSSCEEEEEEC----
T ss_pred CCCCeeEEEE--EcCCCcEEEEEECCCCCEEEEEcCCCcEEEEEC--CCCcEEEeecccccCCCCCCCCEEEEEEC----
Confidence 9866543322 22333444443 4578999988888877643 323222 2211 1234467777774
Q ss_pred CCcccccccceeeeeeccccccccccccCCcccccccCCCceeEEEEeCCCcEEEEEeCC
Q psy92 424 SRGIIDGSLVWKFLQLSLGERLEICKKIGSKHNDILDEFSSMGFMISDKDKNVVLFMYQP 483 (638)
Q Consensus 424 ~~~~vd~~~~~~~~~~~~gd~~~~~~r~~~~~~~~~~~~~~l~~l~aD~~~nl~v~~~~~ 483 (638)
.| +. .++.+..++.+.++....
T Consensus 266 ----~~--------------------------------g~--~l~s~s~d~~v~~wd~~~ 287 (393)
T 1erj_A 266 ----RD--------------------------------GQ--SVVSGSLDRSVKLWNLQN 287 (393)
T ss_dssp ----TT--------------------------------SS--EEEEEETTSEEEEEEC--
T ss_pred ----CC--------------------------------CC--EEEEEeCCCEEEEEECCC
Confidence 33 32 477888999999998754
No 37
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=96.93 E-value=0.32 Score=51.71 Aligned_cols=123 Identities=16% Similarity=0.148 Sum_probs=71.9
Q ss_pred ccEEEEeecccCCCCcccceeEEEEEEEEeecCCCCccccCceEEEEEEeeCCceEEEccccCeeEEEec--CEEEEEEe
Q psy92 276 RGYIALGTNYNYSEDVTCRGRILLFDIIEVVPEPGQPLTKNKIKMIYAKEQKGPVTAICHVAGFLVTAVG--QKIYIWQL 353 (638)
Q Consensus 276 ~~~ivVGT~~~~~ed~~~~GrI~vf~i~~vvpe~g~~~t~~kLkl~~~~~~~G~V~al~~~~g~Ll~avg--~~l~v~~l 353 (638)
..+|+.|. ..|.|++|++.. .+..........++|++++--+|.++++.+ .+|++|++
T Consensus 210 ~~~l~s~~---------~d~~i~vwd~~~-----------~~~~~~~~~~h~~~v~~~~~sd~~~l~s~~~d~~v~vwd~ 269 (450)
T 2vdu_B 210 HQFIITSD---------RDEHIKISHYPQ-----------CFIVDKWLFGHKHFVSSICCGKDYLLLSAGGDDKIFAWDW 269 (450)
T ss_dssp CEEEEEEE---------TTSCEEEEEESC-----------TTCEEEECCCCSSCEEEEEECSTTEEEEEESSSEEEEEET
T ss_pred CcEEEEEc---------CCCcEEEEECCC-----------CceeeeeecCCCCceEEEEECCCCEEEEEeCCCeEEEEEC
Confidence 46888886 468999999743 122212222456889998633665555443 48999999
Q ss_pred eCCceeeeEEe------------------------ecceeEEEEeee--cCEEEEee-ccCcEEEEEE-eccCCeEEEEe
Q psy92 354 KDNDLTGIAFI------------------------DTEVYIASMVSV--KNLILVGD-YARSIALLRY-QPEYRTLSLVA 405 (638)
Q Consensus 354 ~~~~L~~~a~~------------------------d~~~~i~~i~~~--~~~IlvgD-~~~Sv~ll~~-~~~~~~l~~~a 405 (638)
...++...-.. .....+.++... +++|+++- --..|.++.. +....++..+.
T Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~ 349 (450)
T 2vdu_B 270 KTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQ 349 (450)
T ss_dssp TTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETTCSEEEEEEECSSSTTCEEEEE
T ss_pred CCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECCCCeEEEEEeccCCCCceeecc
Confidence 87664322211 112335555544 67888877 6778888887 33344444433
Q ss_pred ccCCCcceeeeec
Q psy92 406 RDYKPTQPNSKGY 418 (638)
Q Consensus 406 rD~~~~~v~~~~~ 418 (638)
.=.....++++.|
T Consensus 350 ~~~~~~~v~~~~~ 362 (450)
T 2vdu_B 350 IITFPYNVISLSA 362 (450)
T ss_dssp EEECSSCEEEEEE
T ss_pred EeccCCceEEEEe
Confidence 3222245666656
No 38
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=96.91 E-value=0.48 Score=48.65 Aligned_cols=190 Identities=7% Similarity=0.067 Sum_probs=106.9
Q ss_pred CCeEEEEEeCCCCCCCCCceeEEEeCCCcccEEEEecCCCEEEEEEeeecCCCcccccCCccccccCCCCCCCCCCCccc
Q psy92 151 KSELRISVLPTHLSYDAPWPVRKVPLKCTPHFLAYHLETKTYCIVTSTAEPSTDYYKFNGEDKELVTDPRDSRFIPPLVS 230 (638)
Q Consensus 151 ~~~L~I~~l~~~~~~~~~~~~r~ipL~~tp~ri~y~~~~~~~~V~~s~~~~~~~~~~~~~e~~e~~~~~~~~~~~~p~~~ 230 (638)
++.+++-.+.+ .-..+.++.+..|+.++++|..+.+++..+.
T Consensus 11 d~~v~v~d~~~------~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~-------------------------------- 52 (391)
T 1l0q_A 11 SDNISVIDVTS------NKVTATIPVGSNPMGAVISPDGTKVYVANAH-------------------------------- 52 (391)
T ss_dssp TTEEEEEETTT------TEEEEEEECSSSEEEEEECTTSSEEEEEEGG--------------------------------
T ss_pred CCEEEEEECCC------CeEEEEeecCCCcceEEECCCCCEEEEECCC--------------------------------
Confidence 57777777654 3456778888889999999988766554321
Q ss_pred ccEEEEEeCCCceeecceeecCCCceeEeEEEEEEeeccCccCCcccEEEEeecccCCCCcccceeEEEEEEEEeecCCC
Q psy92 231 QFHVSLFSPFSWEEIPQTNFPLHEWEHVLCLKNVSMEYEGTLSGLRGYIALGTNYNYSEDVTCRGRILLFDIIEVVPEPG 310 (638)
Q Consensus 231 ~~~i~lid~~t~~~i~~~~~~l~~~E~v~si~~v~l~~~~~~~~~~~~ivVGT~~~~~ed~~~~GrI~vf~i~~vvpe~g 310 (638)
...|+++|..+.+.+. .+.... .+.++ .+.. ...+++++.. ..|.|++|++..
T Consensus 53 d~~i~v~d~~~~~~~~--~~~~~~--~v~~~---~~sp------dg~~l~~~~~--------~~~~v~v~d~~~------ 105 (391)
T 1l0q_A 53 SNDVSIIDTATNNVIA--TVPAGS--SPQGV---AVSP------DGKQVYVTNM--------ASSTLSVIDTTS------ 105 (391)
T ss_dssp GTEEEEEETTTTEEEE--EEECSS--SEEEE---EECT------TSSEEEEEET--------TTTEEEEEETTT------
T ss_pred CCeEEEEECCCCeEEE--EEECCC--Cccce---EECC------CCCEEEEEEC--------CCCEEEEEECCC------
Confidence 1358888887777664 444433 44444 3432 2356655541 347899997532
Q ss_pred CccccCceEEEEEEeeCCceEEEcc-ccC-eeEEEe--cCEEEEEEeeCCceeeeEEeecceeEEEEee--ecCEEEEee
Q psy92 311 QPLTKNKIKMIYAKEQKGPVTAICH-VAG-FLVTAV--GQKIYIWQLKDNDLTGIAFIDTEVYIASMVS--VKNLILVGD 384 (638)
Q Consensus 311 ~~~t~~kLkl~~~~~~~G~V~al~~-~~g-~Ll~av--g~~l~v~~l~~~~L~~~a~~d~~~~i~~i~~--~~~~IlvgD 384 (638)
.+ .+......+.+.+++- -+| +|+++. ..+|++|++...++...- .....+..+.. .++++++..
T Consensus 106 -----~~--~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~--~~~~~~~~~~~~~dg~~l~~~~ 176 (391)
T 1l0q_A 106 -----NT--VAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTV--SVGRSPKGIAVTPDGTKVYVAN 176 (391)
T ss_dssp -----TE--EEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEE--ECCSSEEEEEECTTSSEEEEEE
T ss_pred -----Ce--EEEEEeCCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEE--ecCCCcceEEECCCCCEEEEEe
Confidence 12 2233334566777763 234 453443 458999999866654322 22333444443 356776654
Q ss_pred ccC-cEEEEEEeccCCeEEEEeccCCCcceeeeec
Q psy92 385 YAR-SIALLRYQPEYRTLSLVARDYKPTQPNSKGY 418 (638)
Q Consensus 385 ~~~-Sv~ll~~~~~~~~l~~~arD~~~~~v~~~~~ 418 (638)
... .|.+ |+....+....... ...+.++.|
T Consensus 177 ~~~~~v~~--~d~~~~~~~~~~~~--~~~~~~~~~ 207 (391)
T 1l0q_A 177 FDSMSISV--IDTVTNSVIDTVKV--EAAPSGIAV 207 (391)
T ss_dssp TTTTEEEE--EETTTTEEEEEEEC--SSEEEEEEE
T ss_pred CCCCEEEE--EECCCCeEEEEEec--CCCccceEE
Confidence 443 3444 55544444333222 234555555
No 39
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=96.90 E-value=0.41 Score=47.68 Aligned_cols=97 Identities=12% Similarity=0.209 Sum_probs=58.2
Q ss_pred ccEEEEeecccCCCCcccceeEEEEEEEEeecCCCCccccCceEEEEEEeeCCceEEEccc-cC-eeEEE-ecCEEEEEE
Q psy92 276 RGYIALGTNYNYSEDVTCRGRILLFDIIEVVPEPGQPLTKNKIKMIYAKEQKGPVTAICHV-AG-FLVTA-VGQKIYIWQ 352 (638)
Q Consensus 276 ~~~ivVGT~~~~~ed~~~~GrI~vf~i~~vvpe~g~~~t~~kLkl~~~~~~~G~V~al~~~-~g-~Ll~a-vg~~l~v~~ 352 (638)
..+|+.|. ..|.|.+|++.. + ..+..+ ....++|++++-. ++ +|+++ ...+|++|+
T Consensus 77 ~~~l~s~~---------~d~~i~vwd~~~-----~-----~~~~~~--~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd 135 (312)
T 4ery_A 77 SNLLVSAS---------DDKTLKIWDVSS-----G-----KCLKTL--KGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 135 (312)
T ss_dssp SSEEEEEE---------TTSEEEEEETTT-----C-----CEEEEE--ECCSSCEEEEEECSSSSEEEEEETTSCEEEEE
T ss_pred CCEEEEEC---------CCCEEEEEECCC-----C-----cEEEEE--cCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEE
Confidence 47888887 678999998642 1 112211 2356788887632 34 44444 345899999
Q ss_pred eeCCceeeeEEeecceeEEEEee--ecCEEEEeeccCcEEEEEE
Q psy92 353 LKDNDLTGIAFIDTEVYIASMVS--VKNLILVGDYARSIALLRY 394 (638)
Q Consensus 353 l~~~~L~~~a~~d~~~~i~~i~~--~~~~IlvgD~~~Sv~ll~~ 394 (638)
+...+.... +......+.++.. .++++++|..-..|.++..
T Consensus 136 ~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~ 178 (312)
T 4ery_A 136 VKTGKCLKT-LPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 178 (312)
T ss_dssp TTTCCEEEE-ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred CCCCEEEEE-ecCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEC
Confidence 986654321 1112234555544 4678999988888777654
No 40
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.89 E-value=0.53 Score=53.63 Aligned_cols=196 Identities=10% Similarity=0.106 Sum_probs=108.1
Q ss_pred cCCeEEEEEeCCCCCCCCCceeEEEeCC-CcccEEEEecCCCEEEEEEeeecCCCcccccCCccccccCCCCCCCCCCCc
Q psy92 150 AKSELRISVLPTHLSYDAPWPVRKVPLK-CTPHFLAYHLETKTYCIVTSTAEPSTDYYKFNGEDKELVTDPRDSRFIPPL 228 (638)
Q Consensus 150 ~~~~L~I~~l~~~~~~~~~~~~r~ipL~-~tp~ri~y~~~~~~~~V~~s~~~~~~~~~~~~~e~~e~~~~~~~~~~~~p~ 228 (638)
.++.++|-.+.+ .-.++++... ..++.++++|..+.++++..
T Consensus 33 ~~g~v~iwd~~~------~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~------------------------------- 75 (814)
T 3mkq_A 33 YSGRVEIWNYET------QVEVRSIQVTETPVRAGKFIARKNWIIVGSD------------------------------- 75 (814)
T ss_dssp TTSEEEEEETTT------TEEEEEEECCSSCEEEEEEEGGGTEEEEEET-------------------------------
T ss_pred CCCEEEEEECCC------CceEEEEecCCCcEEEEEEeCCCCEEEEEeC-------------------------------
Confidence 356677766554 2345555533 45788999998877665431
Q ss_pred ccccEEEEEeCCCceeecceeecCCCceeEeEEEEEEeeccCccCCcccEEEEeecccCCCCcccceeEEEEEEEEeecC
Q psy92 229 VSQFHVSLFSPFSWEEIPQTNFPLHEWEHVLCLKNVSMEYEGTLSGLRGYIALGTNYNYSEDVTCRGRILLFDIIEVVPE 308 (638)
Q Consensus 229 ~~~~~i~lid~~t~~~i~~~~~~l~~~E~v~si~~v~l~~~~~~~~~~~~ivVGT~~~~~ed~~~~GrI~vf~i~~vvpe 308 (638)
.+.|++.|..+.+.+. .+.-.. ..+.++ .+.. ..++|++|+ ..|.|.+|++..
T Consensus 76 --dg~i~vw~~~~~~~~~--~~~~~~-~~v~~~---~~s~------~~~~l~~~~---------~dg~i~vw~~~~---- 128 (814)
T 3mkq_A 76 --DFRIRVFNYNTGEKVV--DFEAHP-DYIRSI---AVHP------TKPYVLSGS---------DDLTVKLWNWEN---- 128 (814)
T ss_dssp --TSEEEEEETTTCCEEE--EEECCS-SCEEEE---EECS------SSSEEEEEE---------TTSEEEEEEGGG----
T ss_pred --CCeEEEEECCCCcEEE--EEecCC-CCEEEE---EEeC------CCCEEEEEc---------CCCEEEEEECCC----
Confidence 1346777766665543 333222 234444 3432 246788887 678999998742
Q ss_pred CCCccccCceEEEEEEeeCCceEEEccc--cCeeEEEe--cCEEEEEEeeCCceeeeEEeecceeEEEEe--e--ecCEE
Q psy92 309 PGQPLTKNKIKMIYAKEQKGPVTAICHV--AGFLVTAV--GQKIYIWQLKDNDLTGIAFIDTEVYIASMV--S--VKNLI 380 (638)
Q Consensus 309 ~g~~~t~~kLkl~~~~~~~G~V~al~~~--~g~Ll~av--g~~l~v~~l~~~~L~~~a~~d~~~~i~~i~--~--~~~~I 380 (638)
+.++.. .-....++|++++-- +|.++++. ..+|++|++...+....-.......+..+. . .++++
T Consensus 129 ------~~~~~~-~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l 201 (814)
T 3mkq_A 129 ------NWALEQ-TFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYM 201 (814)
T ss_dssp ------TSEEEE-EEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEE
T ss_pred ------CceEEE-EEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEE
Confidence 112222 223457889998743 45444433 468999999755432221111112333333 3 56799
Q ss_pred EEeeccCcEEEEEEeccCCeEEEEeccCCCcceeeeecc
Q psy92 381 LVGDYARSIALLRYQPEYRTLSLVARDYKPTQPNSKGYY 419 (638)
Q Consensus 381 lvgD~~~Sv~ll~~~~~~~~l~~~arD~~~~~v~~~~~l 419 (638)
++|..-..|.++..+ ..+....-+ .....++++.+-
T Consensus 202 ~~~~~dg~i~~~d~~--~~~~~~~~~-~~~~~v~~~~~~ 237 (814)
T 3mkq_A 202 ITASDDLTIKIWDYQ--TKSCVATLE-GHMSNVSFAVFH 237 (814)
T ss_dssp EEECTTSEEEEEETT--TTEEEEEEE-CCSSCEEEEEEC
T ss_pred EEEeCCCEEEEEECC--CCcEEEEEc-CCCCCEEEEEEc
Confidence 999888877776543 233222211 123446666664
No 41
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=96.89 E-value=0.16 Score=52.66 Aligned_cols=181 Identities=10% Similarity=0.080 Sum_probs=103.2
Q ss_pred ccEEEEeecccCCCCcccceeEEEEEEEEeecCCCCccccCceEEEEEE-eeCCceEEEccc--cCeeEEEe--cCEEEE
Q psy92 276 RGYIALGTNYNYSEDVTCRGRILLFDIIEVVPEPGQPLTKNKIKMIYAK-EQKGPVTAICHV--AGFLVTAV--GQKIYI 350 (638)
Q Consensus 276 ~~~ivVGT~~~~~ed~~~~GrI~vf~i~~vvpe~g~~~t~~kLkl~~~~-~~~G~V~al~~~--~g~Ll~av--g~~l~v 350 (638)
..+|+.|. ..|.|.+|++.. . +.+... ...++|++++-. ++.++++. ..+|++
T Consensus 151 g~~l~sgs---------~dg~v~iwd~~~-----------~--~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~ 208 (357)
T 4g56_B 151 GTQAVSGG---------KDFSVKVWDLSQ-----------K--AVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILL 208 (357)
T ss_dssp SSEEEEEE---------TTSCEEEEETTT-----------T--EEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEE
T ss_pred CCEEEEEe---------CCCeEEEEECCC-----------C--cEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEE
Confidence 46888887 678999998532 1 222222 347899998632 33344443 358999
Q ss_pred EEeeCCcee-eeEEeecceeEEEEeee---cCEEEEeeccCcEEEEEEeccCCeEEEEeccCCCcceeeeecccCCCCCc
Q psy92 351 WQLKDNDLT-GIAFIDTEVYIASMVSV---KNLILVGDYARSIALLRYQPEYRTLSLVARDYKPTQPNSKGYYAGNPSRG 426 (638)
Q Consensus 351 ~~l~~~~L~-~~a~~d~~~~i~~i~~~---~~~IlvgD~~~Sv~ll~~~~~~~~l~~~arD~~~~~v~~~~~l~~~~~~~ 426 (638)
|++...+.. ...+......++++... +.++++|+.-..|.++..+.... +..+. .....++++.|-
T Consensus 209 wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~-~~~~~--~~~~~v~~l~~s------- 278 (357)
T 4g56_B 209 WDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDS-AQTSA--VHSQNITGLAYS------- 278 (357)
T ss_dssp CCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGG-CEEEC--CCSSCEEEEEEC-------
T ss_pred EECCCCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCCcE-eEEEe--ccceeEEEEEEc-------
Confidence 999865432 22222334456666653 46888898888888876543221 21221 223457777674
Q ss_pred ccccccceeeeeeccccccccccccCCcccccccCCCceeEEEEeCCCcEEEEEeCCCCcCCCCCceEEEEeeeecCcce
Q psy92 427 IIDGSLVWKFLQLSLGERLEICKKIGSKHNDILDEFSSMGFMISDKDKNVVLFMYQPEARESNGGHRLIKKTDFHLGQHV 506 (638)
Q Consensus 427 ~vd~~~~~~~~~~~~gd~~~~~~r~~~~~~~~~~~~~~l~~l~aD~~~nl~v~~~~~~~~~s~~~~~L~~~~~f~lg~~v 506 (638)
.| +..+ ++.+..++.+.++..+. ++.+... ...+.|
T Consensus 279 -p~--------------------------------~~~~-lasgs~D~~i~iwd~~~-------~~~~~~~---~H~~~V 314 (357)
T 4g56_B 279 -YH--------------------------------SSPF-LASISEDCTVAVLDADF-------SEVFRDL---SHRDFV 314 (357)
T ss_dssp -SS--------------------------------SSCC-EEEEETTSCEEEECTTS-------CEEEEEC---CCSSCE
T ss_pred -CC--------------------------------CCCE-EEEEeCCCEEEEEECCC-------CcEeEEC---CCCCCE
Confidence 34 3332 56677899999986432 2222222 223456
Q ss_pred eeEEEEeccCCCCCCCCCCCCceEEEEEeCCCcEEEEE
Q psy92 507 NTFFKIRCKPSSISDAPGARSRFLTWYASLDGALGFFL 544 (638)
Q Consensus 507 ~~~~~~~~~~~~~~~~~~~~~~~~il~~t~~GsIg~l~ 544 (638)
+++.-. +.....++.++.||.|-+.-
T Consensus 315 ~~vafs------------P~d~~~l~s~s~Dg~v~iW~ 340 (357)
T 4g56_B 315 TGVAWS------------PLDHSKFTTVGWDHKVLHHH 340 (357)
T ss_dssp EEEEEC------------SSSTTEEEEEETTSCEEEEE
T ss_pred EEEEEe------------CCCCCEEEEEcCCCeEEEEE
Confidence 654221 11223577788999997664
No 42
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=96.74 E-value=0.76 Score=48.43 Aligned_cols=97 Identities=12% Similarity=0.226 Sum_probs=65.4
Q ss_pred ccEEEEeecccCCCCcccceeEEEEEEEEeecCCCCccccCceEEEEE-EeeCCceEEEccccCeeEEEe-cCEEEEEEe
Q psy92 276 RGYIALGTNYNYSEDVTCRGRILLFDIIEVVPEPGQPLTKNKIKMIYA-KEQKGPVTAICHVAGFLVTAV-GQKIYIWQL 353 (638)
Q Consensus 276 ~~~ivVGT~~~~~ed~~~~GrI~vf~i~~vvpe~g~~~t~~kLkl~~~-~~~~G~V~al~~~~g~Ll~av-g~~l~v~~l 353 (638)
..++++|+ ..|.|.+|++.. .+ .+.. ....++|+++..-+..|++|. ..+|++|++
T Consensus 266 ~~~l~s~~---------~dg~i~vwd~~~-----------~~--~~~~~~~~~~~v~~~~~~~~~l~~g~~dg~i~iwd~ 323 (435)
T 1p22_A 266 DKYIVSAS---------GDRTIKVWNTST-----------CE--FVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDI 323 (435)
T ss_dssp TTEEEEEE---------TTSEEEEEETTT-----------CC--EEEEEECCSSCEEEEEEETTEEEEEETTSCEEEEET
T ss_pred CCEEEEEe---------CCCeEEEEECCc-----------Cc--EEEEEcCCCCcEEEEEeCCCEEEEEeCCCeEEEEEC
Confidence 36888887 678999998642 11 2222 235788999876444555553 458999999
Q ss_pred eCCceeeeEEeecceeEEEEeeecCEEEEeeccCcEEEEEEe
Q psy92 354 KDNDLTGIAFIDTEVYIASMVSVKNLILVGDYARSIALLRYQ 395 (638)
Q Consensus 354 ~~~~L~~~a~~d~~~~i~~i~~~~~~IlvgD~~~Sv~ll~~~ 395 (638)
...+.... +......+.++...++++++|..-..|.++...
T Consensus 324 ~~~~~~~~-~~~h~~~v~~~~~~~~~l~sg~~dg~i~vwd~~ 364 (435)
T 1p22_A 324 ECGACLRV-LEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLV 364 (435)
T ss_dssp TTCCEEEE-ECCCSSCEEEEECCSSEEEEEETTSCEEEEEHH
T ss_pred CCCCEEEE-EeCCcCcEEEEEecCCEEEEEeCCCcEEEEECC
Confidence 86654321 112345677777788999999988888888764
No 43
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=96.71 E-value=0.78 Score=48.30 Aligned_cols=216 Identities=14% Similarity=0.156 Sum_probs=122.2
Q ss_pred EEEEEeCCCceeecceeecCCCceeEeEEEEEEeeccCccCCcccEEEEeecccCCCCcccceeEEEEEEEEeecCCCCc
Q psy92 233 HVSLFSPFSWEEIPQTNFPLHEWEHVLCLKNVSMEYEGTLSGLRGYIALGTNYNYSEDVTCRGRILLFDIIEVVPEPGQP 312 (638)
Q Consensus 233 ~i~lid~~t~~~i~~~~~~l~~~E~v~si~~v~l~~~~~~~~~~~~ivVGT~~~~~ed~~~~GrI~vf~i~~vvpe~g~~ 312 (638)
.|++.|..+.+.+. .+.- ..+.+.++. +. ..+++.|+ ..|.|.+|++.. +
T Consensus 194 ~i~vwd~~~~~~~~--~~~~-h~~~v~~l~---~~--------~~~l~s~s---------~dg~i~vwd~~~-----~-- 243 (435)
T 1p22_A 194 TVRVWDVNTGEMLN--TLIH-HCEAVLHLR---FN--------NGMMVTCS---------KDRSIAVWDMAS-----P-- 243 (435)
T ss_dssp CEEEEESSSCCEEE--EECC-CCSCEEEEE---CC--------TTEEEEEE---------TTSCEEEEECSS-----S--
T ss_pred eEEEEECCCCcEEE--EEcC-CCCcEEEEE---Ec--------CCEEEEee---------CCCcEEEEeCCC-----C--
Confidence 47777766666553 3332 223455543 32 24888887 678999998753 1
Q ss_pred cccCceEEEE-EEeeCCceEEEccccCeeEEEe-cCEEEEEEeeCCceeeeEEeecceeEEEEeeecCEEEEeeccCcEE
Q psy92 313 LTKNKIKMIY-AKEQKGPVTAICHVAGFLVTAV-GQKIYIWQLKDNDLTGIAFIDTEVYIASMVSVKNLILVGDYARSIA 390 (638)
Q Consensus 313 ~t~~kLkl~~-~~~~~G~V~al~~~~g~Ll~av-g~~l~v~~l~~~~L~~~a~~d~~~~i~~i~~~~~~IlvgD~~~Sv~ 390 (638)
..+.... .....++|++++.-+.+|++|. ..+|++|++...+....- -.....+.++...++++++|..-..|.
T Consensus 244 ---~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~-~~~~~~v~~~~~~~~~l~~g~~dg~i~ 319 (435)
T 1p22_A 244 ---TDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTL-NGHKRGIACLQYRDRLVVSGSSDNTIR 319 (435)
T ss_dssp ---SCCEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTTCCEEEEE-ECCSSCEEEEEEETTEEEEEETTSCEE
T ss_pred ---CCceeeeEecCCCCcEEEEEeCCCEEEEEeCCCeEEEEECCcCcEEEEE-cCCCCcEEEEEeCCCEEEEEeCCCeEE
Confidence 1222222 2245789999987444555554 358999999876643321 122345667777899999999888888
Q ss_pred EEEEeccCCeEEEEeccCCCcceeeeecccCCCCCcccccccceeeeeeccccccccccccCCcccccccCCCceeEEEE
Q psy92 391 LLRYQPEYRTLSLVARDYKPTQPNSKGYYAGNPSRGIIDGSLVWKFLQLSLGERLEICKKIGSKHNDILDEFSSMGFMIS 470 (638)
Q Consensus 391 ll~~~~~~~~l~~~arD~~~~~v~~~~~l~~~~~~~~vd~~~~~~~~~~~~gd~~~~~~r~~~~~~~~~~~~~~l~~l~a 470 (638)
++..+. ...+..+. .....++++.+ | +. .++++
T Consensus 320 iwd~~~-~~~~~~~~--~h~~~v~~~~~----------~--------------------------------~~--~l~sg 352 (435)
T 1p22_A 320 LWDIEC-GACLRVLE--GHEELVRCIRF----------D--------------------------------NK--RIVSG 352 (435)
T ss_dssp EEETTT-CCEEEEEC--CCSSCEEEEEC----------C--------------------------------SS--EEEEE
T ss_pred EEECCC-CCEEEEEe--CCcCcEEEEEe----------c--------------------------------CC--EEEEE
Confidence 865532 22222222 22334666544 3 32 47888
Q ss_pred eCCCcEEEEEeCCCC-cCCCCCceEEEEeeeecCcceeeEEEEeccCCCCCCCCCCCCceEEEEEeCCCcEEEEEe
Q psy92 471 DKDKNVVLFMYQPEA-RESNGGHRLIKKTDFHLGQHVNTFFKIRCKPSSISDAPGARSRFLTWYASLDGALGFFLP 545 (638)
Q Consensus 471 D~~~nl~v~~~~~~~-~~s~~~~~L~~~~~f~lg~~v~~~~~~~~~~~~~~~~~~~~~~~~il~~t~~GsIg~l~p 545 (638)
..+|.+.++...... +....+........-| ...|+++.- ....++.++.||.|-+.-.
T Consensus 353 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h-~~~v~~l~~---------------~~~~l~s~s~Dg~i~iwd~ 412 (435)
T 1p22_A 353 AYDGKIKVWDLVAALDPRAPAGTLCLRTLVEH-SGRVFRLQF---------------DEFQIVSSSHDDTILIWDF 412 (435)
T ss_dssp ETTSCEEEEEHHHHTSTTSCTTTTEEEEECCC-SSCCCCEEE---------------CSSCEEECCSSSEEEEEC-
T ss_pred eCCCcEEEEECCCCCCccccccchheeeccCC-CCCeEEEEe---------------CCCEEEEEeCCCEEEEEEC
Confidence 899999999875321 1111111122222222 233444422 1234788888999877643
No 44
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=96.68 E-value=0.31 Score=56.15 Aligned_cols=147 Identities=14% Similarity=0.205 Sum_probs=92.9
Q ss_pred ccEEEEeecccCCCCcccceeEEEEEEEEeecCCCCccccCceEEEEE-EeeCCceEEEcccc---C-eeEEEe-cCEEE
Q psy92 276 RGYIALGTNYNYSEDVTCRGRILLFDIIEVVPEPGQPLTKNKIKMIYA-KEQKGPVTAICHVA---G-FLVTAV-GQKIY 349 (638)
Q Consensus 276 ~~~ivVGT~~~~~ed~~~~GrI~vf~i~~vvpe~g~~~t~~kLkl~~~-~~~~G~V~al~~~~---g-~Ll~av-g~~l~ 349 (638)
..+++.|. ..|.|.+|++.. .+.+.+.. ....++|++++--. | .|++|. ..+|+
T Consensus 67 ~~~l~s~s---------~Dg~I~vwd~~~-----------~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~ 126 (753)
T 3jro_A 67 GTILASCS---------YDGKVLIWKEEN-----------GRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVS 126 (753)
T ss_dssp CSEEEEEE---------TTSCEEEEEEET-----------TEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEE
T ss_pred CCEEEEEe---------CCCeEEEEECCC-----------CcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEE
Confidence 47888887 679999999863 23333333 34678999997432 4 444443 35899
Q ss_pred EEEeeCCcee-eeEEeecceeEEEEee---------------ecCEEEEeeccCcEEEEEEeccCCeEEEEec-cCCCcc
Q psy92 350 IWQLKDNDLT-GIAFIDTEVYIASMVS---------------VKNLILVGDYARSIALLRYQPEYRTLSLVAR-DYKPTQ 412 (638)
Q Consensus 350 v~~l~~~~L~-~~a~~d~~~~i~~i~~---------------~~~~IlvgD~~~Sv~ll~~~~~~~~l~~~ar-D~~~~~ 412 (638)
+|++..+... ..........+.++.. .++++++|..-..|.++..+........+.. ......
T Consensus 127 vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~ 206 (753)
T 3jro_A 127 VVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDW 206 (753)
T ss_dssp EEECCSSSCCCCEEEECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSC
T ss_pred EEEeecCCCcceeEeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCc
Confidence 9999865322 2222233445555554 2678999999889988887655433333221 233455
Q ss_pred eeeeecccCCCCCcccccccceeeeeeccccccccccccCCcccccccCC--CceeEEEEeCCCcEEEEEeCC
Q psy92 413 PNSKGYYAGNPSRGIIDGSLVWKFLQLSLGERLEICKKIGSKHNDILDEF--SSMGFMISDKDKNVVLFMYQP 483 (638)
Q Consensus 413 v~~~~~l~~~~~~~~vd~~~~~~~~~~~~gd~~~~~~r~~~~~~~~~~~~--~~l~~l~aD~~~nl~v~~~~~ 483 (638)
++++.|- .+ + .. .++++..+|.+.++....
T Consensus 207 V~~l~~s--------p~--------------------------------~~~~~-~l~s~s~Dg~I~iwd~~~ 238 (753)
T 3jro_A 207 VRDVAWS--------PT--------------------------------VLLRS-YLASVSQDRTCIIWTQDN 238 (753)
T ss_dssp EEEEEEC--------CC--------------------------------CSSSE-EEEEEESSSCEEEEEESS
T ss_pred EEEEEec--------cC--------------------------------CCCCC-EEEEEecCCEEEEecCCC
Confidence 7777663 22 1 23 478888999999998865
No 45
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=96.67 E-value=0.67 Score=47.00 Aligned_cols=193 Identities=16% Similarity=0.183 Sum_probs=109.6
Q ss_pred cCCeEEEEEeCCCCCCCCCceeEEEeCCC-cccEEEEecCCCEEEEEEeeecCCCcccccCCccccccCCCCCCCCCCCc
Q psy92 150 AKSELRISVLPTHLSYDAPWPVRKVPLKC-TPHFLAYHLETKTYCIVTSTAEPSTDYYKFNGEDKELVTDPRDSRFIPPL 228 (638)
Q Consensus 150 ~~~~L~I~~l~~~~~~~~~~~~r~ipL~~-tp~ri~y~~~~~~~~V~~s~~~~~~~~~~~~~e~~e~~~~~~~~~~~~p~ 228 (638)
.++.+++-.+.+ .-.++.+..+. ....++++|..+.++.+..
T Consensus 100 ~D~~i~lWd~~~------~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~------------------------------- 142 (321)
T 3ow8_A 100 LDAHIRLWDLEN------GKQIKSIDAGPVDAWTLAFSPDSQYLATGTH------------------------------- 142 (321)
T ss_dssp TTSEEEEEETTT------TEEEEEEECCTTCCCCEEECTTSSEEEEECT-------------------------------
T ss_pred CCCcEEEEECCC------CCEEEEEeCCCccEEEEEECCCCCEEEEEcC-------------------------------
Confidence 478888877665 34556665543 4667889988776654321
Q ss_pred ccccEEEEEeCCCceeecceeecCCCceeEeEEEEEEeeccCccCCcccEEEEeecccCCCCcccceeEEEEEEEEeecC
Q psy92 229 VSQFHVSLFSPFSWEEIPQTNFPLHEWEHVLCLKNVSMEYEGTLSGLRGYIALGTNYNYSEDVTCRGRILLFDIIEVVPE 308 (638)
Q Consensus 229 ~~~~~i~lid~~t~~~i~~~~~~l~~~E~v~si~~v~l~~~~~~~~~~~~ivVGT~~~~~ed~~~~GrI~vf~i~~vvpe 308 (638)
...+++++..+.+... .+... ...+.++ .+.. ...+|+.|+ ..|.|.+|++..
T Consensus 143 --dg~v~i~~~~~~~~~~--~~~~~-~~~v~~~---~~sp------dg~~lasg~---------~dg~i~iwd~~~---- 195 (321)
T 3ow8_A 143 --VGKVNIFGVESGKKEY--SLDTR-GKFILSI---AYSP------DGKYLASGA---------IDGIINIFDIAT---- 195 (321)
T ss_dssp --TSEEEEEETTTCSEEE--EEECS-SSCEEEE---EECT------TSSEEEEEE---------TTSCEEEEETTT----
T ss_pred --CCcEEEEEcCCCceeE--EecCC-CceEEEE---EECC------CCCEEEEEc---------CCCeEEEEECCC----
Confidence 1235555554443322 22221 2234443 3432 247899887 678999998632
Q ss_pred CCCccccCceEEEEEE-eeCCceEEEcc-ccCeeEEEec--CEEEEEEeeCCceeeeEEeecceeEEEEee--ecCEEEE
Q psy92 309 PGQPLTKNKIKMIYAK-EQKGPVTAICH-VAGFLVTAVG--QKIYIWQLKDNDLTGIAFIDTEVYIASMVS--VKNLILV 382 (638)
Q Consensus 309 ~g~~~t~~kLkl~~~~-~~~G~V~al~~-~~g~Ll~avg--~~l~v~~l~~~~L~~~a~~d~~~~i~~i~~--~~~~Ilv 382 (638)
. +.+... ...++|++++- -+|.++++.+ .+|++|++...++... +..-...|.++.. .+.+++.
T Consensus 196 -------~--~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~-~~~h~~~v~~~~~sp~~~~l~s 265 (321)
T 3ow8_A 196 -------G--KLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGT-LSGHASWVLNVAFCPDDTHFVS 265 (321)
T ss_dssp -------T--EEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEE-ECCCSSCEEEEEECTTSSEEEE
T ss_pred -------C--cEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEE-EcCCCCceEEEEECCCCCEEEE
Confidence 1 223322 34678998863 3455555443 4799999986664432 1122344666654 3678888
Q ss_pred eeccCcEEEEEEeccCCeEEEEeccCCCcceeeeecc
Q psy92 383 GDYARSIALLRYQPEYRTLSLVARDYKPTQPNSKGYY 419 (638)
Q Consensus 383 gD~~~Sv~ll~~~~~~~~l~~~arD~~~~~v~~~~~l 419 (638)
|..-..|.+.... ..+....-.. ....|.++.|-
T Consensus 266 ~s~D~~v~iwd~~--~~~~~~~~~~-h~~~v~~v~~s 299 (321)
T 3ow8_A 266 SSSDKSVKVWDVG--TRTCVHTFFD-HQDQVWGVKYN 299 (321)
T ss_dssp EETTSCEEEEETT--TTEEEEEECC-CSSCEEEEEEC
T ss_pred EeCCCcEEEEeCC--CCEEEEEEcC-CCCcEEEEEEC
Confidence 8888888776543 3333222222 23457777774
No 46
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=96.67 E-value=0.69 Score=47.07 Aligned_cols=214 Identities=13% Similarity=0.202 Sum_probs=119.0
Q ss_pred EEEEEeCCCceeecceeecCCCceeEeEEEEEEeeccCccCCcccEEEEeecccCCCCcccceeEEEEEEEEeecCCCCc
Q psy92 233 HVSLFSPFSWEEIPQTNFPLHEWEHVLCLKNVSMEYEGTLSGLRGYIALGTNYNYSEDVTCRGRILLFDIIEVVPEPGQP 312 (638)
Q Consensus 233 ~i~lid~~t~~~i~~~~~~l~~~E~v~si~~v~l~~~~~~~~~~~~ivVGT~~~~~ed~~~~GrI~vf~i~~vvpe~g~~ 312 (638)
.+++.|..+.+.+. .+..... .+.++ .+.. ...+++.|. ..|.+.+|++.. +
T Consensus 78 ~v~iWd~~~~~~~~--~~~~~~~-~v~~~---~~s~------~~~~l~s~~---------~d~~v~iw~~~~-----~-- 129 (340)
T 1got_B 78 KLIIWDSYTTNKVH--AIPLRSS-WVMTC---AYAP------SGNYVACGG---------LDNICSIYNLKT-----R-- 129 (340)
T ss_dssp EEEEEETTTCCEEE--EEECSSS-CEEEE---EECT------TSSEEEEEE---------TTCEEEEEETTT-----C--
T ss_pred cEEEEECCCCCcce--EeecCCc-cEEEE---EECC------CCCEEEEEe---------CCCeEEEEECcc-----C--
Confidence 47777766555543 3443332 34443 4432 247888887 568899998632 1
Q ss_pred cccCceEEEEE-EeeCCceEEEccc-cCeeEEEec-CEEEEEEeeCCceeeeEEeecceeEEEEee--ecCEEEEeeccC
Q psy92 313 LTKNKIKMIYA-KEQKGPVTAICHV-AGFLVTAVG-QKIYIWQLKDNDLTGIAFIDTEVYIASMVS--VKNLILVGDYAR 387 (638)
Q Consensus 313 ~t~~kLkl~~~-~~~~G~V~al~~~-~g~Ll~avg-~~l~v~~l~~~~L~~~a~~d~~~~i~~i~~--~~~~IlvgD~~~ 387 (638)
....++... ....++|+++.-. ++.|+++.+ .+|++|++...+.... +......+.++.. .+++++.|..-.
T Consensus 130 --~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~~-~~~h~~~v~~~~~~~~~~~l~sg~~d~ 206 (340)
T 1got_B 130 --EGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTT-FTGHTGDVMSLSLAPDTRLFVSGACDA 206 (340)
T ss_dssp --SBSCEEEEEEECCSSCEEEEEEEETTEEEEEETTSCEEEEETTTTEEEEE-ECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred --CCcceeEEEecCCCccEEEEEECCCCcEEEEECCCcEEEEECCCCcEEEE-EcCCCCceEEEEECCCCCEEEEEeCCC
Confidence 112233322 2356888887644 356666544 5899999986654321 1112234555554 357889998888
Q ss_pred cEEEEEEeccCCeEEEEeccCCCcceeeeecccCCCCCcccccccceeeeeeccccccccccccCCcccccccCCCceeE
Q psy92 388 SIALLRYQPEYRTLSLVARDYKPTQPNSKGYYAGNPSRGIIDGSLVWKFLQLSLGERLEICKKIGSKHNDILDEFSSMGF 467 (638)
Q Consensus 388 Sv~ll~~~~~~~~l~~~arD~~~~~v~~~~~l~~~~~~~~vd~~~~~~~~~~~~gd~~~~~~r~~~~~~~~~~~~~~l~~ 467 (638)
.|.+...+.. ..+..+. .....++++.|- .| +. .+
T Consensus 207 ~v~~wd~~~~-~~~~~~~--~h~~~v~~v~~~--------p~--------------------------------~~--~l 241 (340)
T 1got_B 207 SAKLWDVREG-MCRQTFT--GHESDINAICFF--------PN--------------------------------GN--AF 241 (340)
T ss_dssp CEEEEETTTC-SEEEEEC--CCSSCEEEEEEC--------TT--------------------------------SS--EE
T ss_pred cEEEEECCCC-eeEEEEc--CCcCCEEEEEEc--------CC--------------------------------CC--EE
Confidence 8888654322 2222221 223457777674 33 33 47
Q ss_pred EEEeCCCcEEEEEeCCCCcCCCCCceEEEEeeeecCc---ceeeEEEEeccCCCCCCCCCCCCceEEEEEeCCCcEEEEE
Q psy92 468 MISDKDKNVVLFMYQPEARESNGGHRLIKKTDFHLGQ---HVNTFFKIRCKPSSISDAPGARSRFLTWYASLDGALGFFL 544 (638)
Q Consensus 468 l~aD~~~nl~v~~~~~~~~~s~~~~~L~~~~~f~lg~---~v~~~~~~~~~~~~~~~~~~~~~~~~il~~t~~GsIg~l~ 544 (638)
+.+..++.+.++..... +.+. .+.... .|+++ ... . ....++.|+.+|.|-+.-
T Consensus 242 ~s~s~d~~v~iwd~~~~-------~~~~---~~~~~~~~~~v~~~---~~s---------~-~g~~l~~g~~d~~i~vwd 298 (340)
T 1got_B 242 ATGSDDATCRLFDLRAD-------QELM---TYSHDNIICGITSV---SFS---------K-SGRLLLAGYDDFNCNVWD 298 (340)
T ss_dssp EEEETTSCEEEEETTTT-------EEEE---EECCTTCCSCEEEE---EEC---------T-TSSEEEEEETTSEEEEEE
T ss_pred EEEcCCCcEEEEECCCC-------cEEE---EEccCCcccceEEE---EEC---------C-CCCEEEEECCCCeEEEEE
Confidence 78889999999976542 2222 222222 23433 221 1 234677888999887765
Q ss_pred e
Q psy92 545 P 545 (638)
Q Consensus 545 p 545 (638)
.
T Consensus 299 ~ 299 (340)
T 1got_B 299 A 299 (340)
T ss_dssp T
T ss_pred c
Confidence 3
No 47
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=96.66 E-value=0.54 Score=46.09 Aligned_cols=140 Identities=13% Similarity=0.126 Sum_probs=85.4
Q ss_pred ccEEEEeecccCCCCcccceeEEEEEEEEeecCCCCccccCceEEEEEEeeCCceEEEccc-cCeeEEE-ecCEEEEEEe
Q psy92 276 RGYIALGTNYNYSEDVTCRGRILLFDIIEVVPEPGQPLTKNKIKMIYAKEQKGPVTAICHV-AGFLVTA-VGQKIYIWQL 353 (638)
Q Consensus 276 ~~~ivVGT~~~~~ed~~~~GrI~vf~i~~vvpe~g~~~t~~kLkl~~~~~~~G~V~al~~~-~g~Ll~a-vg~~l~v~~l 353 (638)
..++++|+ ..|.|.+|+.. +..........++|++++-. ++.|+++ ....|++|++
T Consensus 155 ~~~l~~~~---------~d~~i~i~d~~-------------~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~dg~i~i~d~ 212 (313)
T 3odt_A 155 ENKFLTAS---------ADKTIKLWQND-------------KVIKTFSGIHNDVVRHLAVVDDGHFISCSNDGLIKLVDM 212 (313)
T ss_dssp TTEEEEEE---------TTSCEEEEETT-------------EEEEEECSSCSSCEEEEEEEETTEEEEEETTSEEEEEET
T ss_pred CCEEEEEE---------CCCCEEEEecC-------------ceEEEEeccCcccEEEEEEcCCCeEEEccCCCeEEEEEC
Confidence 46788887 67899999721 22223333367888888754 4455544 3458999999
Q ss_pred eCCceeeeEEeecceeEEEEeeec-CEEEEeeccCcEEEEEEeccCCeEEEEeccCCCcceeeeecccCCCCCccccccc
Q psy92 354 KDNDLTGIAFIDTEVYIASMVSVK-NLILVGDYARSIALLRYQPEYRTLSLVARDYKPTQPNSKGYYAGNPSRGIIDGSL 432 (638)
Q Consensus 354 ~~~~L~~~a~~d~~~~i~~i~~~~-~~IlvgD~~~Sv~ll~~~~~~~~l~~~arD~~~~~v~~~~~l~~~~~~~~vd~~~ 432 (638)
...+....- ......++++.... +++++|..-..|.++.. ...+....-.. ....++++.+. .|
T Consensus 213 ~~~~~~~~~-~~~~~~i~~~~~~~~~~l~~~~~dg~v~iwd~--~~~~~~~~~~~-~~~~i~~~~~~--------~~--- 277 (313)
T 3odt_A 213 HTGDVLRTY-EGHESFVYCIKLLPNGDIVSCGEDRTVRIWSK--ENGSLKQVITL-PAISIWSVDCM--------SN--- 277 (313)
T ss_dssp TTCCEEEEE-ECCSSCEEEEEECTTSCEEEEETTSEEEEECT--TTCCEEEEEEC-SSSCEEEEEEC--------TT---
T ss_pred Cchhhhhhh-hcCCceEEEEEEecCCCEEEEecCCEEEEEEC--CCCceeEEEec-cCceEEEEEEc--------cC---
Confidence 866543321 12334566666553 37888887777777544 33333222221 22356777664 23
Q ss_pred ceeeeeeccccccccccccCCcccccccCCCceeEEEEeCCCcEEEEEeCCC
Q psy92 433 VWKFLQLSLGERLEICKKIGSKHNDILDEFSSMGFMISDKDKNVVLFMYQPE 484 (638)
Q Consensus 433 ~~~~~~~~~gd~~~~~~r~~~~~~~~~~~~~~l~~l~aD~~~nl~v~~~~~~ 484 (638)
+ .++++..++.+.++.....
T Consensus 278 -----------------------------~---~~~~~~~dg~i~iw~~~~~ 297 (313)
T 3odt_A 278 -----------------------------G---DIIVGSSDNLVRIFSQEKS 297 (313)
T ss_dssp -----------------------------S---CEEEEETTSCEEEEESCGG
T ss_pred -----------------------------C---CEEEEeCCCcEEEEeCCCC
Confidence 3 2678899999999987653
No 48
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=96.59 E-value=0.85 Score=47.14 Aligned_cols=102 Identities=13% Similarity=0.235 Sum_probs=60.6
Q ss_pred cccEEEEeecccCCCCcccceeEEEEEEEEeecCCCCccccCceEEEEEEeeCCceEEEcccc-C--eeEEEec-CEEEE
Q psy92 275 LRGYIALGTNYNYSEDVTCRGRILLFDIIEVVPEPGQPLTKNKIKMIYAKEQKGPVTAICHVA-G--FLVTAVG-QKIYI 350 (638)
Q Consensus 275 ~~~~ivVGT~~~~~ed~~~~GrI~vf~i~~vvpe~g~~~t~~kLkl~~~~~~~G~V~al~~~~-g--~Ll~avg-~~l~v 350 (638)
...++++|+ ..|.|.+|++.. .+..........++|++++--. | +|+++.. ..|++
T Consensus 258 ~~~~l~~~~---------~dg~i~i~d~~~-----------~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~v 317 (420)
T 3vl1_A 258 YGKYVIAGH---------VSGVITVHNVFS-----------KEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQ 317 (420)
T ss_dssp TTEEEEEEE---------TTSCEEEEETTT-----------CCEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEE
T ss_pred CCCEEEEEc---------CCCeEEEEECCC-----------CceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEE
Confidence 346888887 678999998642 1211122223568899987432 3 4555443 58999
Q ss_pred EEeeCCce-eeeEEeecceeEEEEeee-cCEEEEeeccCcEEEEEEec
Q psy92 351 WQLKDNDL-TGIAFIDTEVYIASMVSV-KNLILVGDYARSIALLRYQP 396 (638)
Q Consensus 351 ~~l~~~~L-~~~a~~d~~~~i~~i~~~-~~~IlvgD~~~Sv~ll~~~~ 396 (638)
|++...+. ...-.......+..+... +++++.|..-..|.+.....
T Consensus 318 wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~d~~v~iw~~~~ 365 (420)
T 3vl1_A 318 WDLRSPECPVGEFLINEGTPINNVYFAAGALFVSSGFDTSIKLDIISD 365 (420)
T ss_dssp EETTCTTSCSEEEEESTTSCEEEEEEETTEEEEEETTTEEEEEEEECC
T ss_pred EEcCCCcCchhhhhccCCCCceEEEeCCCCEEEEecCCccEEEEeccC
Confidence 99986432 221111233455555544 45777787777787777654
No 49
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=96.57 E-value=0.83 Score=46.81 Aligned_cols=179 Identities=11% Similarity=0.099 Sum_probs=103.7
Q ss_pred EEEEE--cCCeEEEEEeCCCCCCCCCceeEEEeCCCcccEEEEecCCCEEEEEEeeecCCCcccccCCccccccCCCCCC
Q psy92 145 FLYFN--AKSELRISVLPTHLSYDAPWPVRKVPLKCTPHFLAYHLETKTYCIVTSTAEPSTDYYKFNGEDKELVTDPRDS 222 (638)
Q Consensus 145 fl~~~--~~~~L~I~~l~~~~~~~~~~~~r~ipL~~tp~ri~y~~~~~~~~V~~s~~~~~~~~~~~~~e~~e~~~~~~~~ 222 (638)
.++++ .++.+++..+.+ .-..+.++.+..+..++++|..+.++++.+.
T Consensus 45 ~l~~~~~~d~~i~v~d~~~------~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~------------------------ 94 (391)
T 1l0q_A 45 KVYVANAHSNDVSIIDTAT------NNVIATVPAGSSPQGVAVSPDGKQVYVTNMA------------------------ 94 (391)
T ss_dssp EEEEEEGGGTEEEEEETTT------TEEEEEEECSSSEEEEEECTTSSEEEEEETT------------------------
T ss_pred EEEEECCCCCeEEEEECCC------CeEEEEEECCCCccceEECCCCCEEEEEECC------------------------
Confidence 55554 467888876654 3457788888899999999988866654321
Q ss_pred CCCCCcccccEEEEEeCCCceeecceeecCCCceeEeEEEEEEeeccCccCCcccEE-EEeecccCCCCcccceeEEEEE
Q psy92 223 RFIPPLVSQFHVSLFSPFSWEEIPQTNFPLHEWEHVLCLKNVSMEYEGTLSGLRGYI-ALGTNYNYSEDVTCRGRILLFD 301 (638)
Q Consensus 223 ~~~~p~~~~~~i~lid~~t~~~i~~~~~~l~~~E~v~si~~v~l~~~~~~~~~~~~i-vVGT~~~~~ed~~~~GrI~vf~ 301 (638)
...|.++|..+.+.+. .+... ..+.++ .+... ..++ +.+. ..|.|++|+
T Consensus 95 --------~~~v~v~d~~~~~~~~--~~~~~--~~~~~~---~~s~d------g~~l~~~~~---------~~~~v~~~d 144 (391)
T 1l0q_A 95 --------SSTLSVIDTTSNTVAG--TVKTG--KSPLGL---ALSPD------GKKLYVTNN---------GDKTVSVIN 144 (391)
T ss_dssp --------TTEEEEEETTTTEEEE--EEECS--SSEEEE---EECTT------SSEEEEEET---------TTTEEEEEE
T ss_pred --------CCEEEEEECCCCeEEE--EEeCC--CCcceE---EECCC------CCEEEEEeC---------CCCEEEEEE
Confidence 1347888887777654 33332 234333 34321 2444 4443 467899997
Q ss_pred EEEeecCCCCccccCceEEEEEEeeCCceEEEcc-ccC-eeEEEe--cCEEEEEEeeCCceeeeEEeecceeEEEEee--
Q psy92 302 IIEVVPEPGQPLTKNKIKMIYAKEQKGPVTAICH-VAG-FLVTAV--GQKIYIWQLKDNDLTGIAFIDTEVYIASMVS-- 375 (638)
Q Consensus 302 i~~vvpe~g~~~t~~kLkl~~~~~~~G~V~al~~-~~g-~Ll~av--g~~l~v~~l~~~~L~~~a~~d~~~~i~~i~~-- 375 (638)
+.. . +.+........+.+++- -+| +|+++. +.+|++|++...+.... +.....+.++..
T Consensus 145 ~~~-----------~--~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~--~~~~~~~~~~~~~~ 209 (391)
T 1l0q_A 145 TVT-----------K--AVINTVSVGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDT--VKVEAAPSGIAVNP 209 (391)
T ss_dssp TTT-----------T--EEEEEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEE--EECSSEEEEEEECT
T ss_pred CCC-----------C--cEEEEEecCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEE--EecCCCccceEECC
Confidence 531 1 22333344556666652 234 564543 35799999986654432 233444555544
Q ss_pred ecCEEEEeec---cCcEEEEEEeccCCe
Q psy92 376 VKNLILVGDY---ARSIALLRYQPEYRT 400 (638)
Q Consensus 376 ~~~~IlvgD~---~~Sv~ll~~~~~~~~ 400 (638)
.++++++++. ...|.+ |+....+
T Consensus 210 ~g~~l~~~~~~~~~~~v~~--~d~~~~~ 235 (391)
T 1l0q_A 210 EGTKAYVTNVDKYFNTVSM--IDTGTNK 235 (391)
T ss_dssp TSSEEEEEEECSSCCEEEE--EETTTTE
T ss_pred CCCEEEEEecCcCCCcEEE--EECCCCe
Confidence 3678888874 344444 4544333
No 50
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=96.56 E-value=0.6 Score=46.33 Aligned_cols=147 Identities=11% Similarity=0.010 Sum_probs=80.3
Q ss_pred cCCeEEEEEeCCCCCCCCCceeEEEeCCC---cccEEEEecCCCEEEEEEeeecCCCcccccCCccccccCCCCCCCCCC
Q psy92 150 AKSELRISVLPTHLSYDAPWPVRKVPLKC---TPHFLAYHLETKTYCIVTSTAEPSTDYYKFNGEDKELVTDPRDSRFIP 226 (638)
Q Consensus 150 ~~~~L~I~~l~~~~~~~~~~~~r~ipL~~---tp~ri~y~~~~~~~~V~~s~~~~~~~~~~~~~e~~e~~~~~~~~~~~~ 226 (638)
.++.+.+..+.+ .-..++++++. .|+.++++|..+.++++...
T Consensus 9 ~~~~v~~~d~~~------~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~---------------------------- 54 (337)
T 1pby_B 9 RPDKLVVIDTEK------MAVDKVITIADAGPTPMVPMVAPGGRIAYATVNK---------------------------- 54 (337)
T ss_dssp TTTEEEEEETTT------TEEEEEEECTTCTTCCCCEEECTTSSEEEEEETT----------------------------
T ss_pred CCCeEEEEECCC------CcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCC----------------------------
Confidence 467776665543 35677888888 79999999988776654321
Q ss_pred CcccccEEEEEeCCCceeecceeecCCC-c---eeEeEEEEEEeeccCccCCcccEEEEeecccC-CCCcc--cceeEEE
Q psy92 227 PLVSQFHVSLFSPFSWEEIPQTNFPLHE-W---EHVLCLKNVSMEYEGTLSGLRGYIALGTNYNY-SEDVT--CRGRILL 299 (638)
Q Consensus 227 p~~~~~~i~lid~~t~~~i~~~~~~l~~-~---E~v~si~~v~l~~~~~~~~~~~~ivVGT~~~~-~ed~~--~~GrI~v 299 (638)
...|.++|..+.+.+. .+.+.. + +.+.+ +.+.. ...+++++..... ..+.. ..|+|.+
T Consensus 55 ----~~~v~~~d~~~~~~~~--~~~~~~~~~~~~~~~~---~~~s~------dg~~l~~~~~~~~~~~~~~~~~~~~i~v 119 (337)
T 1pby_B 55 ----SESLVKIDLVTGETLG--RIDLSTPEERVKSLFG---AALSP------DGKTLAIYESPVRLELTHFEVQPTRVAL 119 (337)
T ss_dssp ----TTEEEEEETTTCCEEE--EEECCBTTEEEECTTC---EEECT------TSSEEEEEEEEEEECSSCEEECCCEEEE
T ss_pred ----CCeEEEEECCCCCeEe--eEEcCCcccccccccc---eEECC------CCCEEEEEecccccccccccccCceEEE
Confidence 1246777776666553 344322 1 12222 23332 1245555542111 11111 3588999
Q ss_pred EEEEEeecCCCCccccCceEEEEEEeeCCceEEEc-cccCe-eEEEecCEEEEEEeeCCcee
Q psy92 300 FDIIEVVPEPGQPLTKNKIKMIYAKEQKGPVTAIC-HVAGF-LVTAVGQKIYIWQLKDNDLT 359 (638)
Q Consensus 300 f~i~~vvpe~g~~~t~~kLkl~~~~~~~G~V~al~-~~~g~-Ll~avg~~l~v~~l~~~~L~ 359 (638)
|++.. .+ .+........+.+++ .-+|+ |+++ +..|++|++...++.
T Consensus 120 ~d~~~-----------~~--~~~~~~~~~~~~~~~~s~dg~~l~~~-~~~i~~~d~~~~~~~ 167 (337)
T 1pby_B 120 YDAET-----------LS--RRKAFEAPRQITMLAWARDGSKLYGL-GRDLHVMDPEAGTLV 167 (337)
T ss_dssp EETTT-----------TE--EEEEEECCSSCCCEEECTTSSCEEEE-SSSEEEEETTTTEEE
T ss_pred EECCC-----------Cc--EEEEEeCCCCcceeEECCCCCEEEEe-CCeEEEEECCCCcEe
Confidence 87531 12 222233344555554 22444 6555 788999999866544
No 51
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=96.53 E-value=0.74 Score=45.76 Aligned_cols=130 Identities=16% Similarity=0.278 Sum_probs=72.1
Q ss_pred EEEEEeCCCceeecceeecCCCceeEeEEEEEEeeccCccCCcccEEEEeecccCCCCcccceeEEEEEEEEeecCCCCc
Q psy92 233 HVSLFSPFSWEEIPQTNFPLHEWEHVLCLKNVSMEYEGTLSGLRGYIALGTNYNYSEDVTCRGRILLFDIIEVVPEPGQP 312 (638)
Q Consensus 233 ~i~lid~~t~~~i~~~~~~l~~~E~v~si~~v~l~~~~~~~~~~~~ivVGT~~~~~ed~~~~GrI~vf~i~~vvpe~g~~ 312 (638)
.+++.|..+.+.+. .+.-.. ..+.|+ .+.. ...+++.|. ..|.|.+|++.. +
T Consensus 88 ~i~vwd~~~~~~~~--~~~~~~-~~v~~~---~~~~------~~~~l~s~~---------~d~~i~iwd~~~-----~-- 139 (312)
T 4ery_A 88 TLKIWDVSSGKCLK--TLKGHS-NYVFCC---NFNP------QSNLIVSGS---------FDESVRIWDVKT-----G-- 139 (312)
T ss_dssp EEEEEETTTCCEEE--EEECCS-SCEEEE---EECS------SSSEEEEEE---------TTSCEEEEETTT-----C--
T ss_pred EEEEEECCCCcEEE--EEcCCC-CCEEEE---EEcC------CCCEEEEEe---------CCCcEEEEECCC-----C--
Confidence 46666655555443 232222 234443 3332 246888887 678999998632 1
Q ss_pred cccCceEEEEEEeeCCceEEEcc-ccCe-eEEEe-cCEEEEEEeeCCceeeeEEeecceeEEEEe--eecCEEEEeeccC
Q psy92 313 LTKNKIKMIYAKEQKGPVTAICH-VAGF-LVTAV-GQKIYIWQLKDNDLTGIAFIDTEVYIASMV--SVKNLILVGDYAR 387 (638)
Q Consensus 313 ~t~~kLkl~~~~~~~G~V~al~~-~~g~-Ll~av-g~~l~v~~l~~~~L~~~a~~d~~~~i~~i~--~~~~~IlvgD~~~ 387 (638)
..++.+ ....++|++++- -+|. |+++. ...|++|++...+....-.......+..+. ..++++++|..-.
T Consensus 140 ---~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~ 214 (312)
T 4ery_A 140 ---KCLKTL--PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDN 214 (312)
T ss_dssp ---CEEEEE--CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTT
T ss_pred ---EEEEEe--cCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCC
Confidence 112211 234678888863 2444 44443 458999999866543322122223344444 3467899998888
Q ss_pred cEEEEEEe
Q psy92 388 SIALLRYQ 395 (638)
Q Consensus 388 Sv~ll~~~ 395 (638)
.|.++.++
T Consensus 215 ~i~iwd~~ 222 (312)
T 4ery_A 215 TLKLWDYS 222 (312)
T ss_dssp EEEEEETT
T ss_pred eEEEEECC
Confidence 77776543
No 52
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=96.52 E-value=0.57 Score=46.96 Aligned_cols=98 Identities=13% Similarity=0.342 Sum_probs=63.5
Q ss_pred cEEEEeecccCCCCcccceeEEEEEEEEeecCCCCccccCceEEEEEEeeCCceEEEccc-cC-eeEEEe-cCEEEEEEe
Q psy92 277 GYIALGTNYNYSEDVTCRGRILLFDIIEVVPEPGQPLTKNKIKMIYAKEQKGPVTAICHV-AG-FLVTAV-GQKIYIWQL 353 (638)
Q Consensus 277 ~~ivVGT~~~~~ed~~~~GrI~vf~i~~vvpe~g~~~t~~kLkl~~~~~~~G~V~al~~~-~g-~Ll~av-g~~l~v~~l 353 (638)
.+++.|+ ..|.|.+|++.. ..+.....-...+++|++++-. +| +|+++. ...|++|++
T Consensus 55 ~~l~~~~---------~dg~i~iw~~~~----------~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~ 115 (368)
T 3mmy_A 55 NFLIAGS---------WANDVRCWEVQD----------SGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDL 115 (368)
T ss_dssp EEEEEEE---------TTSEEEEEEECT----------TSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred eEEEEEC---------CCCcEEEEEcCC----------CCceeEEEeccccCCEEEEEECcCCCEEEEEcCCCcEEEEEc
Confidence 7899887 679999999853 1122212233468999999743 44 455443 458999999
Q ss_pred eCCceeeeEEeecceeEEEEee----ecCEEEEeeccCcEEEEEEe
Q psy92 354 KDNDLTGIAFIDTEVYIASMVS----VKNLILVGDYARSIALLRYQ 395 (638)
Q Consensus 354 ~~~~L~~~a~~d~~~~i~~i~~----~~~~IlvgD~~~Sv~ll~~~ 395 (638)
...++... ......+.++.. .+++++.|..-..|.++..+
T Consensus 116 ~~~~~~~~--~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~ 159 (368)
T 3mmy_A 116 SSNQAIQI--AQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTR 159 (368)
T ss_dssp TTTEEEEE--EECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSS
T ss_pred CCCCceee--ccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECC
Confidence 87765543 334455666654 34678888877777776543
No 53
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=96.48 E-value=2.4 Score=51.03 Aligned_cols=153 Identities=13% Similarity=0.076 Sum_probs=84.4
Q ss_pred EEEEEeCCCceeecceeecCCCceeEeEEEEEEeeccCccCCcccEEEEeecccCCCCcccceeEEEEEEEEeecCCCCc
Q psy92 233 HVSLFSPFSWEEIPQTNFPLHEWEHVLCLKNVSMEYEGTLSGLRGYIALGTNYNYSEDVTCRGRILLFDIIEVVPEPGQP 312 (638)
Q Consensus 233 ~i~lid~~t~~~i~~~~~~l~~~E~v~si~~v~l~~~~~~~~~~~~ivVGT~~~~~ed~~~~GrI~vf~i~~vvpe~g~~ 312 (638)
.+++.|..+.+.+. .+.-. ...+.++ .+.. ...+++.|+ ..|.|.+|++.. +
T Consensus 724 ~v~vwd~~~~~~~~--~~~~h-~~~v~~~---~~sp------~~~~l~s~s---------~dg~v~vwd~~~-----~-- 775 (1249)
T 3sfz_A 724 FLKLWDLNQKECRN--TMFGH-TNSVNHC---RFSP------DDELLASCS---------ADGTLRLWDVRS-----A-- 775 (1249)
T ss_dssp CEEEEETTSSSEEE--EECCC-SSCEEEE---EECS------STTEEEEEE---------SSSEEEEEEGGG-----T--
T ss_pred eEEEEECCCcchhh--eecCC-CCCEEEE---EEec------CCCEEEEEE---------CCCeEEEEeCCC-----C--
Confidence 36677766555443 22211 2234444 3432 246888887 678999998743 1
Q ss_pred cccCceEEE-----------EEEeeCCceEEEc--cccCeeEEEecCEEEEEEeeCCceeeeEEeecceeEEE--Eeeec
Q psy92 313 LTKNKIKMI-----------YAKEQKGPVTAIC--HVAGFLVTAVGQKIYIWQLKDNDLTGIAFIDTEVYIAS--MVSVK 377 (638)
Q Consensus 313 ~t~~kLkl~-----------~~~~~~G~V~al~--~~~g~Ll~avg~~l~v~~l~~~~L~~~a~~d~~~~i~~--i~~~~ 377 (638)
...+.+ ........|.+++ +-+..++++.+..+++|++...+............+.+ ....+
T Consensus 776 ---~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~ 852 (1249)
T 3sfz_A 776 ---NERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYD 852 (1249)
T ss_dssp ---EEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSST
T ss_pred ---cccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCC
Confidence 111111 1112234566654 33446778888999999998666443322122223333 33457
Q ss_pred CEEEEeeccCcEEEEEEeccCCeEEEEeccCCCcceeeeecc
Q psy92 378 NLILVGDYARSIALLRYQPEYRTLSLVARDYKPTQPNSKGYY 419 (638)
Q Consensus 378 ~~IlvgD~~~Sv~ll~~~~~~~~l~~~arD~~~~~v~~~~~l 419 (638)
+++++|+.-..|.++..+ ..+.....+ ....+++++.|-
T Consensus 853 ~~l~~~~~dg~v~vwd~~--~~~~~~~~~-~h~~~v~~v~~s 891 (1249)
T 3sfz_A 853 HLAVIALSQYCVELWNID--SRLKVADCR-GHLSWVHGVMFS 891 (1249)
T ss_dssp TEEEEECSSSCEEEEETT--TTEEEEEEC-CCSSCEEEEEEC
T ss_pred CEEEEEeCCCeEEEEEcC--CCceeeecC-CCccceEEEEEC
Confidence 899999988888876553 333332222 344567787774
No 54
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=96.48 E-value=0.67 Score=47.27 Aligned_cols=98 Identities=10% Similarity=0.120 Sum_probs=60.0
Q ss_pred ccEEEEeecccCCCCcccceeEEEEEEEEeecCCCCccccCceEEEEEEeeCCceEEEccc----cC-eeEEE-ecCEEE
Q psy92 276 RGYIALGTNYNYSEDVTCRGRILLFDIIEVVPEPGQPLTKNKIKMIYAKEQKGPVTAICHV----AG-FLVTA-VGQKIY 349 (638)
Q Consensus 276 ~~~ivVGT~~~~~ed~~~~GrI~vf~i~~vvpe~g~~~t~~kLkl~~~~~~~G~V~al~~~----~g-~Ll~a-vg~~l~ 349 (638)
..+++.|+ ..|.|.+|++.. .+.+......+++.+++-. ++ .|+++ .+..|+
T Consensus 112 ~~~l~s~~---------~d~~i~iwd~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 169 (408)
T 4a11_B 112 TGMFTSSS---------FDKTLKVWDTNT-------------LQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQ 169 (408)
T ss_dssp TTCEEEEE---------TTSEEEEEETTT-------------TEEEEEEECSSCEEEEEECSSCSSCCEEEEEESSSSEE
T ss_pred CcEEEEEe---------CCCeEEEeeCCC-------------CccceeccCCCceeeeEeecCCCCCcEEEEEcCCCeEE
Confidence 45777776 678999998642 2233334567788877533 22 34443 345899
Q ss_pred EEEeeCCceeeeEEeecceeEEEEeee--cC-EEEEeeccCcEEEEEEec
Q psy92 350 IWQLKDNDLTGIAFIDTEVYIASMVSV--KN-LILVGDYARSIALLRYQP 396 (638)
Q Consensus 350 v~~l~~~~L~~~a~~d~~~~i~~i~~~--~~-~IlvgD~~~Sv~ll~~~~ 396 (638)
+|++...+.... +......++++... ++ ++++|+.-..|.++..+.
T Consensus 170 ~~d~~~~~~~~~-~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~ 218 (408)
T 4a11_B 170 LCDLKSGSCSHI-LQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRR 218 (408)
T ss_dssp EEESSSSCCCEE-ECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTC
T ss_pred EEeCCCcceeee-ecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCC
Confidence 999986553321 11233456666654 34 578888888888876544
No 55
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=96.45 E-value=1.2 Score=47.07 Aligned_cols=150 Identities=13% Similarity=0.124 Sum_probs=87.3
Q ss_pred cEEEEEeCCCceeecceeecCCCceeEeEEEEEEeeccCccCCcccEEEEeecccCCCCcccceeEEEEEEEEeecCCCC
Q psy92 232 FHVSLFSPFSWEEIPQTNFPLHEWEHVLCLKNVSMEYEGTLSGLRGYIALGTNYNYSEDVTCRGRILLFDIIEVVPEPGQ 311 (638)
Q Consensus 232 ~~i~lid~~t~~~i~~~~~~l~~~E~v~si~~v~l~~~~~~~~~~~~ivVGT~~~~~ed~~~~GrI~vf~i~~vvpe~g~ 311 (638)
+.|++.|..+.+.+. .+.-. ...+.++. +.. ...++++|+ ..|.|.+|++..
T Consensus 290 ~~i~vwd~~~~~~~~--~~~~~-~~~v~~~~---~~~------~~~~l~sg~---------~dg~i~vwd~~~------- 341 (464)
T 3v7d_B 290 NTLIVWDVAQMKCLY--ILSGH-TDRIYSTI---YDH------ERKRCISAS---------MDTTIRIWDLEN------- 341 (464)
T ss_dssp SCEEEEETTTTEEEE--EECCC-SSCEEEEE---EET------TTTEEEEEE---------TTSCEEEEETTT-------
T ss_pred CeEEEEECCCCcEEE--EecCC-CCCEEEEE---EcC------CCCEEEEEe---------CCCcEEEEECCC-------
Confidence 468888887777654 33322 23344443 332 246888887 678999998632
Q ss_pred ccccCceEEEEEE-eeCCceEEEccccCeeEEEe-cCEEEEEEeeCCceeeeEEeecceeEEEEeeecCEEEEeeccCcE
Q psy92 312 PLTKNKIKMIYAK-EQKGPVTAICHVAGFLVTAV-GQKIYIWQLKDNDLTGIAFIDTEVYIASMVSVKNLILVGDYARSI 389 (638)
Q Consensus 312 ~~t~~kLkl~~~~-~~~G~V~al~~~~g~Ll~av-g~~l~v~~l~~~~L~~~a~~d~~~~i~~i~~~~~~IlvgD~~~Sv 389 (638)
. +.+... ...++|++++--+.+|+++. ..+|++|++.+.+............+..+...++++++|. -..|
T Consensus 342 ----~--~~~~~~~~h~~~v~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-dg~i 414 (464)
T 3v7d_B 342 ----G--ELMYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGS-ENQF 414 (464)
T ss_dssp ----T--EEEEEECCCSSCEEEEEECSSEEEEEETTSEEEEEETTTCCEEEEEECTTCCCEEEEEECSSEEEEEE-TTEE
T ss_pred ----C--cEEEEEeCCCCcEEEEEEcCCEEEEEeCCCcEEEEECCCCceeeeecCCCCccEEEEEeCCCEEEEec-CCeE
Confidence 1 222222 35788999885555666554 3589999998655332222333455556667788999888 4455
Q ss_pred EEEEEeccCCeEEEEeccCCCcceeeeec
Q psy92 390 ALLRYQPEYRTLSLVARDYKPTQPNSKGY 418 (638)
Q Consensus 390 ~ll~~~~~~~~l~~~arD~~~~~v~~~~~ 418 (638)
.+ |+-+..++...-.-.....++++.|
T Consensus 415 ~i--wd~~~g~~~~~~~~~~~~~v~~v~~ 441 (464)
T 3v7d_B 415 NI--YNLRSGKLVHANILKDADQIWSVNF 441 (464)
T ss_dssp EE--EETTTCCEEESCTTTTCSEEEEEEE
T ss_pred EE--EECCCCcEEehhhccCCCcEEEEEe
Confidence 44 4544455443211222445666655
No 56
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=96.44 E-value=0.18 Score=52.21 Aligned_cols=119 Identities=12% Similarity=0.149 Sum_probs=66.6
Q ss_pred ccEEEEeecccCCCCcccceeEEEEEEEEeecCCCCccccCceEEEEEE-eeCCceEEEccc-cC-eeEEEe--cCEEEE
Q psy92 276 RGYIALGTNYNYSEDVTCRGRILLFDIIEVVPEPGQPLTKNKIKMIYAK-EQKGPVTAICHV-AG-FLVTAV--GQKIYI 350 (638)
Q Consensus 276 ~~~ivVGT~~~~~ed~~~~GrI~vf~i~~vvpe~g~~~t~~kLkl~~~~-~~~G~V~al~~~-~g-~Ll~av--g~~l~v 350 (638)
..+|+.|. ..|.|.+|++.. .+ .+... ...++|++++-. .+ .++++. ..+|++
T Consensus 139 g~~l~sgs---------~d~~i~iwd~~~-----------~~--~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~i 196 (344)
T 4gqb_B 139 GTQAVSGS---------KDICIKVWDLAQ-----------QV--VLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILL 196 (344)
T ss_dssp SSEEEEEE---------TTSCEEEEETTT-----------TE--EEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEE
T ss_pred CCEEEEEe---------CCCeEEEEECCC-----------Cc--EEEEEcCcCCceEEEEecCCCCCceeeecccccccc
Confidence 47888887 678899998632 12 22222 357899998632 33 454443 368999
Q ss_pred EEeeCCceee-eEEeecceeEEEEeee---cCEEEEeeccCcEEEEEEeccCCeEEEEeccCCCcceeeeecc
Q psy92 351 WQLKDNDLTG-IAFIDTEVYIASMVSV---KNLILVGDYARSIALLRYQPEYRTLSLVARDYKPTQPNSKGYY 419 (638)
Q Consensus 351 ~~l~~~~L~~-~a~~d~~~~i~~i~~~---~~~IlvgD~~~Sv~ll~~~~~~~~l~~~arD~~~~~v~~~~~l 419 (638)
|++...+... .........++++... +++++.|..-..|.++..+.......+- .....|+++.|-
T Consensus 197 wd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~---~h~~~v~~v~fs 266 (344)
T 4gqb_B 197 WDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSA---VHSQCVTGLVFS 266 (344)
T ss_dssp EETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEEE---CCSSCEEEEEEC
T ss_pred ccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEEc---CCCCCEEEEEEc
Confidence 9998655332 1111222345555543 4577888887778776543221112221 233457777774
No 57
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=96.43 E-value=0.38 Score=50.02 Aligned_cols=145 Identities=10% Similarity=0.151 Sum_probs=83.7
Q ss_pred ccEEEEeecccCCCCcccceeEEEEEEEEeecCCCCccccCceEEEEEEeeCCceEEEccc-cCeeEEEec--CEEEEEE
Q psy92 276 RGYIALGTNYNYSEDVTCRGRILLFDIIEVVPEPGQPLTKNKIKMIYAKEQKGPVTAICHV-AGFLVTAVG--QKIYIWQ 352 (638)
Q Consensus 276 ~~~ivVGT~~~~~ed~~~~GrI~vf~i~~vvpe~g~~~t~~kLkl~~~~~~~G~V~al~~~-~g~Ll~avg--~~l~v~~ 352 (638)
..+++.|. ..|.|.+|++.. .+ ..++.+ ....++|++++-. +|.++++.+ .+|++|+
T Consensus 218 ~~~l~sgs---------~D~~v~~wd~~~----~~-----~~~~~~--~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd 277 (380)
T 3iz6_a 218 ANMFISGS---------CDTTVRLWDLRI----TS-----RAVRTY--HGHEGDINSVKFFPDGQRFGTGSDDGTCRLFD 277 (380)
T ss_dssp CCEEEEEE---------TTSCEEEEETTT----TC-----CCCEEE--CCCSSCCCEEEECTTSSEEEEECSSSCEEEEE
T ss_pred CCEEEEEE---------CCCeEEEEECCC----CC-----cceEEE--CCcCCCeEEEEEecCCCeEEEEcCCCeEEEEE
Confidence 46788887 678999998642 01 112221 2357889998743 455555443 4899999
Q ss_pred eeCCceeeeEEeec------ceeEEEEe--eecCEEEEeeccCcEEEEEEeccCCeEEEEec--cCCCcceeeeecccCC
Q psy92 353 LKDNDLTGIAFIDT------EVYIASMV--SVKNLILVGDYARSIALLRYQPEYRTLSLVAR--DYKPTQPNSKGYYAGN 422 (638)
Q Consensus 353 l~~~~L~~~a~~d~------~~~i~~i~--~~~~~IlvgD~~~Sv~ll~~~~~~~~l~~~ar--D~~~~~v~~~~~l~~~ 422 (638)
+...+....-.... ...++++. ..+.++++|..-..|.++.... ...+..+.. ......|+++.|-
T Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~-~~~~~~~~~~~~~h~~~v~~l~~s--- 353 (380)
T 3iz6_a 278 MRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLL-AEMVLNLGTLQNSHEGRISCLGLS--- 353 (380)
T ss_dssp TTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTT-CCEEEEECCSCSSCCCCCCEEEEC---
T ss_pred CCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCC-CceEEEEecccCCCCCceEEEEEC---
Confidence 98655332111100 11233433 4578999998877777754322 122222221 2234457777664
Q ss_pred CCCcccccccceeeeeeccccccccccccCCcccccccCCCceeEEEEeCCCcEEEEEeCC
Q psy92 423 PSRGIIDGSLVWKFLQLSLGERLEICKKIGSKHNDILDEFSSMGFMISDKDKNVVLFMYQP 483 (638)
Q Consensus 423 ~~~~~vd~~~~~~~~~~~~gd~~~~~~r~~~~~~~~~~~~~~l~~l~aD~~~nl~v~~~~~ 483 (638)
.| +. .++.+..++.+.++....
T Consensus 354 -----~d--------------------------------g~--~l~sgs~D~~i~iW~~~~ 375 (380)
T 3iz6_a 354 -----SD--------------------------------GS--ALCTGSWDKNLKIWAFSG 375 (380)
T ss_dssp -----SS--------------------------------SS--EEEEECTTSCEEEEECCS
T ss_pred -----CC--------------------------------CC--EEEEeeCCCCEEEEecCC
Confidence 33 33 477888899999998754
No 58
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=96.42 E-value=0.87 Score=45.25 Aligned_cols=187 Identities=10% Similarity=0.085 Sum_probs=101.0
Q ss_pred cEEEEE--cCCeEEEEEeCCCCCCCCCceeEEEeCCCcccEEEEecCCCEEEEEEeeecCCCcccccCCccccccCCCCC
Q psy92 144 GFLYFN--AKSELRISVLPTHLSYDAPWPVRKVPLKCTPHFLAYHLETKTYCIVTSTAEPSTDYYKFNGEDKELVTDPRD 221 (638)
Q Consensus 144 gfl~~~--~~~~L~I~~l~~~~~~~~~~~~r~ipL~~tp~ri~y~~~~~~~~V~~s~~~~~~~~~~~~~e~~e~~~~~~~ 221 (638)
.++|++ .++.+++..++.. ...-..+.++....|..++++|..+.++++....
T Consensus 5 ~~l~~~~~~~~~v~~~~~~~~---~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~---------------------- 59 (343)
T 1ri6_A 5 QTVYIASPESQQIHVWNLNHE---GALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPE---------------------- 59 (343)
T ss_dssp EEEEEEEGGGTEEEEEEECTT---SCEEEEEEEECSSCCCCEEECTTSSEEEEEETTT----------------------
T ss_pred EEEEEeCCCCCeEEEEEECCC---CcEEEeeeEecCCCCceEEECCCCCEEEEeecCC----------------------
Confidence 456665 3678888888641 1124567788888999999999888766554210
Q ss_pred CCCCCCcccccEEEEEeCC----CceeecceeecCCCceeEeEEEEEEeeccCccCCcccEEEEeecccCCCCcccceeE
Q psy92 222 SRFIPPLVSQFHVSLFSPF----SWEEIPQTNFPLHEWEHVLCLKNVSMEYEGTLSGLRGYIALGTNYNYSEDVTCRGRI 297 (638)
Q Consensus 222 ~~~~~p~~~~~~i~lid~~----t~~~i~~~~~~l~~~E~v~si~~v~l~~~~~~~~~~~~ivVGT~~~~~ed~~~~GrI 297 (638)
..+.+++.. +++.+. .+.... .+.++ .+.. ...+++++.. ..|.|
T Consensus 60 ----------~~v~~~~~~~~~~~~~~~~--~~~~~~--~~~~~---~~s~------dg~~l~~~~~--------~~~~i 108 (343)
T 1ri6_A 60 ----------FRVLAYRIAPDDGALTFAA--ESALPG--SLTHI---STDH------QGQFVFVGSY--------NAGNV 108 (343)
T ss_dssp ----------TEEEEEEECTTTCCEEEEE--EEECSS--CCSEE---EECT------TSSEEEEEET--------TTTEE
T ss_pred ----------CeEEEEEecCCCCceeecc--ccccCC--CCcEE---EEcC------CCCEEEEEec--------CCCeE
Confidence 123332211 233322 222222 23333 2332 2355555541 36789
Q ss_pred EEEEEEEeecCCCCccccCceEEEEEEeeCCceEEEc--cccCeeEEEe--cCEEEEEEeeC-CceeeeE--Ee--ecce
Q psy92 298 LLFDIIEVVPEPGQPLTKNKIKMIYAKEQKGPVTAIC--HVAGFLVTAV--GQKIYIWQLKD-NDLTGIA--FI--DTEV 368 (638)
Q Consensus 298 ~vf~i~~vvpe~g~~~t~~kLkl~~~~~~~G~V~al~--~~~g~Ll~av--g~~l~v~~l~~-~~L~~~a--~~--d~~~ 368 (638)
.+|++.+ + ...+.+........+++++ .-+.+|+++. ..+|++|++.. +++.... .. ....
T Consensus 109 ~~~d~~~-----~-----~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~ 178 (343)
T 1ri6_A 109 SVTRLED-----G-----LPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGA 178 (343)
T ss_dssp EEEEEET-----T-----EEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTC
T ss_pred EEEECCC-----C-----ccccccccccCCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCC
Confidence 9999841 1 1233333334444565553 2233566664 46899999986 6665433 22 2233
Q ss_pred eEEEEee--ecCEEEEeecc-CcEEEEEEec
Q psy92 369 YIASMVS--VKNLILVGDYA-RSIALLRYQP 396 (638)
Q Consensus 369 ~i~~i~~--~~~~IlvgD~~-~Sv~ll~~~~ 396 (638)
.+..+.. .++++++++.. ..+.++.++.
T Consensus 179 ~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~ 209 (343)
T 1ri6_A 179 GPRHMVFHPNEQYAYCVNELNSSVDVWELKD 209 (343)
T ss_dssp CEEEEEECTTSSEEEEEETTTTEEEEEESSC
T ss_pred CcceEEECCCCCEEEEEeCCCCEEEEEEecC
Confidence 4444444 35678777744 4566666543
No 59
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=96.40 E-value=1.1 Score=46.45 Aligned_cols=199 Identities=13% Similarity=0.019 Sum_probs=109.2
Q ss_pred CCeEEEEEeCCCCCCCCCceeEEEeC-CCcccEEEEecCCCEEEEEEeeecCCCcccccCCccccccCCCCCCCCCCCcc
Q psy92 151 KSELRISVLPTHLSYDAPWPVRKVPL-KCTPHFLAYHLETKTYCIVTSTAEPSTDYYKFNGEDKELVTDPRDSRFIPPLV 229 (638)
Q Consensus 151 ~~~L~I~~l~~~~~~~~~~~~r~ipL-~~tp~ri~y~~~~~~~~V~~s~~~~~~~~~~~~~e~~e~~~~~~~~~~~~p~~ 229 (638)
++.+++-.+.. .-..++++. +..|..++++|..+.++++.+.
T Consensus 190 d~~v~~~d~~~------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~------------------------------- 232 (433)
T 3bws_A 190 ANAVHVFDLKT------LAYKATVDLTGKWSKILLYDPIRDLVYCSNWI------------------------------- 232 (433)
T ss_dssp GTEEEEEETTT------CCEEEEEECSSSSEEEEEEETTTTEEEEEETT-------------------------------
T ss_pred CCEEEEEECCC------ceEEEEEcCCCCCeeEEEEcCCCCEEEEEecC-------------------------------
Confidence 46777766654 234555654 4568899999988776554321
Q ss_pred cccEEEEEeCCCceeecceeecCCCceeEeEEEEEEeeccCccCCcccEEEEeecccCCCCc-ccceeEEEEEEEEeecC
Q psy92 230 SQFHVSLFSPFSWEEIPQTNFPLHEWEHVLCLKNVSMEYEGTLSGLRGYIALGTNYNYSEDV-TCRGRILLFDIIEVVPE 308 (638)
Q Consensus 230 ~~~~i~lid~~t~~~i~~~~~~l~~~E~v~si~~v~l~~~~~~~~~~~~ivVGT~~~~~ed~-~~~GrI~vf~i~~vvpe 308 (638)
...|.++|..+.+.+. .+.. ...+.++ .+.. ...++++++.... .. ...|.|++|++..
T Consensus 233 -~~~i~~~d~~~~~~~~--~~~~--~~~~~~~---~~~~------~g~~l~~~~~~~~--~~~~~dg~i~~~d~~~---- 292 (433)
T 3bws_A 233 -SEDISVIDRKTKLEIR--KTDK--IGLPRGL---LLSK------DGKELYIAQFSAS--NQESGGGRLGIYSMDK---- 292 (433)
T ss_dssp -TTEEEEEETTTTEEEE--ECCC--CSEEEEE---EECT------TSSEEEEEEEESC--TTCSCCEEEEEEETTT----
T ss_pred -CCcEEEEECCCCcEEE--EecC--CCCceEE---EEcC------CCCEEEEEECCCC--ccccCCCeEEEEECCC----
Confidence 1247788877766654 3333 2234333 3432 2356666663211 11 2478999998632
Q ss_pred CCCccccCceEEEEEEeeCCceEEEcc-ccC-eeEEEe--cCEEEEEEeeCCceeeeEEeecceeEEEEeee--cCEEEE
Q psy92 309 PGQPLTKNKIKMIYAKEQKGPVTAICH-VAG-FLVTAV--GQKIYIWQLKDNDLTGIAFIDTEVYIASMVSV--KNLILV 382 (638)
Q Consensus 309 ~g~~~t~~kLkl~~~~~~~G~V~al~~-~~g-~Ll~av--g~~l~v~~l~~~~L~~~a~~d~~~~i~~i~~~--~~~Ilv 382 (638)
.+ ++......+.+.+++- -+| +|+++. ..+|++|++...++... +.....+.++... +.++++
T Consensus 293 -------~~--~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~--~~~~~~~~~~~~s~dg~~l~~ 361 (433)
T 3bws_A 293 -------EK--LIDTIGPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKS--IPVFDKPNTIALSPDGKYLYV 361 (433)
T ss_dssp -------TE--EEEEEEEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEE--EECSSSEEEEEECTTSSEEEE
T ss_pred -------Cc--EEeeccCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEE--ecCCCCCCeEEEcCCCCEEEE
Confidence 12 2222233456666652 234 566653 45899999986665432 2334445555544 568888
Q ss_pred eeccCc-E------------EEEEEeccCCeEEEEeccCCCcceeeeecc
Q psy92 383 GDYARS-I------------ALLRYQPEYRTLSLVARDYKPTQPNSKGYY 419 (638)
Q Consensus 383 gD~~~S-v------------~ll~~~~~~~~l~~~arD~~~~~v~~~~~l 419 (638)
++.... + .+..|+.+..+....-.. ..++.++.+-
T Consensus 362 ~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~--~~~~~~~~~s 409 (433)
T 3bws_A 362 SCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEA--GNQPTGLDVS 409 (433)
T ss_dssp EECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEEC--SSSEEEEEEC
T ss_pred EecCCCccccccccccccceEEEEEECCCCcEEEEecC--CCCCceEEEc
Confidence 876542 1 455566655554433222 2345666553
No 60
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=96.31 E-value=0.16 Score=53.96 Aligned_cols=114 Identities=12% Similarity=0.148 Sum_probs=68.4
Q ss_pred ccEEEEeecccCCCCcccceeEEEEEEEEeecCC-------------CCc----cccCceEEEEEEeeCCceEEEcccc-
Q psy92 276 RGYIALGTNYNYSEDVTCRGRILLFDIIEVVPEP-------------GQP----LTKNKIKMIYAKEQKGPVTAICHVA- 337 (638)
Q Consensus 276 ~~~ivVGT~~~~~ed~~~~GrI~vf~i~~vvpe~-------------g~~----~t~~kLkl~~~~~~~G~V~al~~~~- 337 (638)
..+++|||-... ..-.|+++++. .|.. +.. ....+++........++|++++-..
T Consensus 67 ~~~~~~GT~t~~-----~~n~i~i~~~~--lp~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~ 139 (430)
T 2xyi_A 67 VHRLILGTHTSD-----EQNHLLIASVQ--LPSEDAQFDGSHYDNEKGEFGGFGSVCGKIEIEIKINHEGEVNRARYMPQ 139 (430)
T ss_dssp EEEEEEECCCSS-----SCEEEEEEEEE--EC--------------------------CEEEEEEEEESSCCSEEEEETT
T ss_pred eEEEEEEEcCCC-----CCCEEEEEEEE--CCCCccccccccccccccccccccCCCCceEEEEEEcCCCcEEEEEECCC
Confidence 478999994321 45678888775 1110 000 1134677777778899999997553
Q ss_pred -CeeEEEec--CEEEEEEeeC--------CceeeeEEeec-ceeEEEEeee--cC-EEEEeeccCcEEEEEEec
Q psy92 338 -GFLVTAVG--QKIYIWQLKD--------NDLTGIAFIDT-EVYIASMVSV--KN-LILVGDYARSIALLRYQP 396 (638)
Q Consensus 338 -g~Ll~avg--~~l~v~~l~~--------~~L~~~a~~d~-~~~i~~i~~~--~~-~IlvgD~~~Sv~ll~~~~ 396 (638)
+.++++.+ .+|++|++.. .++.+...+.. ...+.++... +. +++.|+.-..|.++....
T Consensus 140 ~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~ 213 (430)
T 2xyi_A 140 NACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINA 213 (430)
T ss_dssp EEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEECTTSCEEEEETTS
T ss_pred CCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeCCCeEEEEeCCC
Confidence 45666554 4799999975 12333222221 2234444433 44 999999888888877654
No 61
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=96.29 E-value=1.2 Score=45.51 Aligned_cols=94 Identities=13% Similarity=0.198 Sum_probs=59.4
Q ss_pred EEEEeecccCCCCcccceeEEEEEEEEeecCCCCccccCceEEEEEEee-------CCceEEEccc-cCe-eEEEec---
Q psy92 278 YIALGTNYNYSEDVTCRGRILLFDIIEVVPEPGQPLTKNKIKMIYAKEQ-------KGPVTAICHV-AGF-LVTAVG--- 345 (638)
Q Consensus 278 ~ivVGT~~~~~ed~~~~GrI~vf~i~~vvpe~g~~~t~~kLkl~~~~~~-------~G~V~al~~~-~g~-Ll~avg--- 345 (638)
++++|+ ..|.|.+|++.. .+.+..... .++|++++-- +|. |+++..
T Consensus 199 ~l~~~~---------~dg~i~i~d~~~-------------~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~ 256 (397)
T 1sq9_A 199 LIATGF---------NNGTVQISELST-------------LRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNS 256 (397)
T ss_dssp EEEEEC---------TTSEEEEEETTT-------------TEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETT
T ss_pred eEEEEe---------CCCcEEEEECCC-------------CceeEEEeccccccccCCccceEEECCCCCEEEEEecCCC
Confidence 888887 678999998642 123333333 7889998732 344 444443
Q ss_pred -CEEEEEEeeCCceeeeEEee-------------cceeEEEEeee--cCEEEEeeccCcEEEEEE
Q psy92 346 -QKIYIWQLKDNDLTGIAFID-------------TEVYIASMVSV--KNLILVGDYARSIALLRY 394 (638)
Q Consensus 346 -~~l~v~~l~~~~L~~~a~~d-------------~~~~i~~i~~~--~~~IlvgD~~~Sv~ll~~ 394 (638)
..|++|++...+....- .. ....+.++... ++++++|..-..|.++..
T Consensus 257 ~g~i~i~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~ 320 (397)
T 1sq9_A 257 FGCITLYETEFGERIGSL-SVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDV 320 (397)
T ss_dssp EEEEEEEETTTCCEEEEE-CBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEET
T ss_pred CceEEEEECCCCccccee-ccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEc
Confidence 47999999866533211 11 23456666654 679999987777777654
No 62
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=96.28 E-value=1.1 Score=46.24 Aligned_cols=196 Identities=13% Similarity=0.055 Sum_probs=110.5
Q ss_pred ccEEEEecCCCEEEEEEeeecCCCcccccCCccccccCCCCCCCCCCCcccccEEEEEeCCCceeecceeecCCCceeEe
Q psy92 180 PHFLAYHLETKTYCIVTSTAEPSTDYYKFNGEDKELVTDPRDSRFIPPLVSQFHVSLFSPFSWEEIPQTNFPLHEWEHVL 259 (638)
Q Consensus 180 p~ri~y~~~~~~~~V~~s~~~~~~~~~~~~~e~~e~~~~~~~~~~~~p~~~~~~i~lid~~t~~~i~~~~~~l~~~E~v~ 259 (638)
++-++++|..+.++++++.. ...|++.|..+.+.+. .++ ....|.
T Consensus 136 ~~~v~fSpDg~~la~as~~~-------------------------------d~~i~iwd~~~~~~~~--~~~--~~~~V~ 180 (365)
T 4h5i_A 136 TKLVYISREGTVAAIASSKV-------------------------------PAIMRIIDPSDLTEKF--EIE--TRGEVK 180 (365)
T ss_dssp EEEEEECTTSSCEEEEESCS-------------------------------SCEEEEEETTTTEEEE--EEE--CSSCCC
T ss_pred EEEEEEcCCCCEEEEEECCC-------------------------------CCEEEEeECCCCcEEE--EeC--CCCceE
Confidence 56788999888877765321 1358889988887654 333 222355
Q ss_pred EEEEEEeeccCccCCcccEEEEeecccCCCCcccceeEEEEEEEEeecCCCCccccCceEEEEEEeeCCceEEEcc-ccC
Q psy92 260 CLKNVSMEYEGTLSGLRGYIALGTNYNYSEDVTCRGRILLFDIIEVVPEPGQPLTKNKIKMIYAKEQKGPVTAICH-VAG 338 (638)
Q Consensus 260 si~~v~l~~~~~~~~~~~~ivVGT~~~~~ed~~~~GrI~vf~i~~vvpe~g~~~t~~kLkl~~~~~~~G~V~al~~-~~g 338 (638)
++ .|.. ...+++.|+ .+.+.+|.... + ..+.........+.|++++- -+|
T Consensus 181 ~v---~fsp------dg~~l~s~s----------~~~~~~~~~~~-----~-----~~~~~~~~~~~~~~v~~v~fspdg 231 (365)
T 4h5i_A 181 DL---HFST------DGKVVAYIT----------GSSLEVISTVT-----G-----SCIARKTDFDKNWSLSKINFIADD 231 (365)
T ss_dssp EE---EECT------TSSEEEEEC----------SSCEEEEETTT-----C-----CEEEEECCCCTTEEEEEEEEEETT
T ss_pred EE---EEcc------CCceEEecc----------ceeEEEEEecc-----C-----cceeeeecCCCCCCEEEEEEcCCC
Confidence 54 4533 246777775 23455554321 1 11111111223456777652 234
Q ss_pred e-eEEEecC-----EEEEEEeeCCce--eeeEEe-ecceeEEEEee--ecCEEEEeeccCcEEEEEEeccCCeEEEEecc
Q psy92 339 F-LVTAVGQ-----KIYIWQLKDNDL--TGIAFI-DTEVYIASMVS--VKNLILVGDYARSIALLRYQPEYRTLSLVARD 407 (638)
Q Consensus 339 ~-Ll~avg~-----~l~v~~l~~~~L--~~~a~~-d~~~~i~~i~~--~~~~IlvgD~~~Sv~ll~~~~~~~~l~~~arD 407 (638)
. |+++... .+..|+...... .....+ .-...|+++.. .+.+|++|..-.+|.++. .+..+....-..
T Consensus 232 ~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd--~~~~~~~~~~~~ 309 (365)
T 4h5i_A 232 TVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVK--LKDLSMSKIFKQ 309 (365)
T ss_dssp EEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEE--TTTTEEEEEETT
T ss_pred CEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEE--CCCCcEEEEecC
Confidence 4 4444321 455566654432 222222 22334566554 467999999888888854 444454433334
Q ss_pred CCCcceeeeecccCCCCCcccccccceeeeeeccccccccccccCCcccccccCCCceeEEEEeCCCcEEEEEeCC
Q psy92 408 YKPTQPNSKGYYAGNPSRGIIDGSLVWKFLQLSLGERLEICKKIGSKHNDILDEFSSMGFMISDKDKNVVLFMYQP 483 (638)
Q Consensus 408 ~~~~~v~~~~~l~~~~~~~~vd~~~~~~~~~~~~gd~~~~~~r~~~~~~~~~~~~~~l~~l~aD~~~nl~v~~~~~ 483 (638)
....+|+++.|- .| +. .++.+-.|+.++|+...+
T Consensus 310 gH~~~V~~v~fS--------pd--------------------------------g~--~laS~S~D~tvrvw~ip~ 343 (365)
T 4h5i_A 310 AHSFAITEVTIS--------PD--------------------------------ST--YVASVSAANTIHIIKLPL 343 (365)
T ss_dssp SSSSCEEEEEEC--------TT--------------------------------SC--EEEEEETTSEEEEEECCT
T ss_pred cccCCEEEEEEC--------CC--------------------------------CC--EEEEEeCCCeEEEEEcCC
Confidence 456679999895 45 43 367778899999998854
No 63
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=96.27 E-value=1.6 Score=47.51 Aligned_cols=126 Identities=11% Similarity=0.109 Sum_probs=65.9
Q ss_pred ccEEEEeecccCCCCcccceeEEEEEEEEeecCCCCccccCceEEEEEEe-eCCceEEEcc-ccCeeEEEecCE----EE
Q psy92 276 RGYIALGTNYNYSEDVTCRGRILLFDIIEVVPEPGQPLTKNKIKMIYAKE-QKGPVTAICH-VAGFLVTAVGQK----IY 349 (638)
Q Consensus 276 ~~~ivVGT~~~~~ed~~~~GrI~vf~i~~vvpe~g~~~t~~kLkl~~~~~-~~G~V~al~~-~~g~Ll~avg~~----l~ 349 (638)
..++++|. ..|.|.+|++... +.....+.+++.... ..++|++++- -+|..+++.+.. ..
T Consensus 78 ~~~l~s~~---------~dg~v~vw~~~~~-----~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~ 143 (615)
T 1pgu_A 78 SQYLCSGD---------ESGKVIVWGWTFD-----KESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGV 143 (615)
T ss_dssp CCEEEEEE---------TTSEEEEEEEEEE-----GGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEE
T ss_pred CCEEEEec---------CCCEEEEEeCCCC-----cccccccccccchhhcccccEEEEEEeCCCCEEEEeccCCCCccE
Confidence 47888887 5789999999641 000001223333333 5789999863 345555555432 44
Q ss_pred EEEeeCCceeeeEEeecceeEEEEeeec--C-EEEEeeccCcEEEEEEeccCCeEEEEeccCCCc---ceeeeecc
Q psy92 350 IWQLKDNDLTGIAFIDTEVYIASMVSVK--N-LILVGDYARSIALLRYQPEYRTLSLVARDYKPT---QPNSKGYY 419 (638)
Q Consensus 350 v~~l~~~~L~~~a~~d~~~~i~~i~~~~--~-~IlvgD~~~Sv~ll~~~~~~~~l~~~arD~~~~---~v~~~~~l 419 (638)
++-|+..+.... +......+.++.... + +++.|..-..|.++. ....+....-+. ... .++++.|-
T Consensus 144 v~~~d~~~~~~~-~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd--~~~~~~~~~~~~-~~~~~~~v~~~~~~ 215 (615)
T 1pgu_A 144 FISWDSGNSLGE-VSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQ--GPPFKFSASDRT-HHKQGSFVRDVEFS 215 (615)
T ss_dssp EEETTTCCEEEE-CCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEE--TTTBEEEEEECS-SSCTTCCEEEEEEC
T ss_pred EEEEECCCccee-eecCCccEEEEEECCCCCcEEEEEeCCCcEEEEe--CCCcceeeeecc-cCCCCceEEEEEEC
Confidence 444443332211 112233455555443 3 788888777777754 333333332222 222 57777774
No 64
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=96.19 E-value=0.19 Score=52.09 Aligned_cols=228 Identities=13% Similarity=0.067 Sum_probs=119.7
Q ss_pred cEEEEEcCCeEEEEEeCCCCCCCCCceeEEEeC---CCcccEEEEecCCCEEEEEEeeecCCCcccccCCccccccCCCC
Q psy92 144 GFLYFNAKSELRISVLPTHLSYDAPWPVRKVPL---KCTPHFLAYHLETKTYCIVTSTAEPSTDYYKFNGEDKELVTDPR 220 (638)
Q Consensus 144 gfl~~~~~~~L~I~~l~~~~~~~~~~~~r~ipL---~~tp~ri~y~~~~~~~~V~~s~~~~~~~~~~~~~e~~e~~~~~~ 220 (638)
.++....++.++|-.+.+.. ...+.+... ...+..++++|..+.++.+..
T Consensus 107 ~~l~~s~dg~v~lWd~~~~~----~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~----------------------- 159 (357)
T 4g56_B 107 GILVASDSGAVELWEILEKE----SLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGK----------------------- 159 (357)
T ss_dssp EEEEEETTSCEEEC------------CCCCEEECCCSSCEEEEEECSSSSEEEEEET-----------------------
T ss_pred CEEEEECCCEEEEeeccccc----eeEEEeeccCCCCCCEEEEEECCCCCEEEEEeC-----------------------
Confidence 34554567777776554421 222222222 235778888887766553321
Q ss_pred CCCCCCCcccccEEEEEeCCCceeecceeecCCCceeEeEEEEEEeeccCccCCcccEEEEeecccCCCCcccceeEEEE
Q psy92 221 DSRFIPPLVSQFHVSLFSPFSWEEIPQTNFPLHEWEHVLCLKNVSMEYEGTLSGLRGYIALGTNYNYSEDVTCRGRILLF 300 (638)
Q Consensus 221 ~~~~~~p~~~~~~i~lid~~t~~~i~~~~~~l~~~E~v~si~~v~l~~~~~~~~~~~~ivVGT~~~~~ed~~~~GrI~vf 300 (638)
...|++.|..+.+.+. .+.-.. ..+.|+ .+... ...+++.|. ..|.|.+|
T Consensus 160 ----------dg~v~iwd~~~~~~~~--~~~~h~-~~v~~v---~~s~~-----~~~~~~s~~---------~dg~v~~w 209 (357)
T 4g56_B 160 ----------DFSVKVWDLSQKAVLK--SYNAHS-SEVNCV---AACPG-----KDTIFLSCG---------EDGRILLW 209 (357)
T ss_dssp ----------TSCEEEEETTTTEEEE--EECCCS-SCEEEE---EECTT-----CSSCEEEEE---------TTSCEEEC
T ss_pred ----------CCeEEEEECCCCcEEE--EEcCCC-CCEEEE---EEccC-----CCceeeeec---------cCCceEEE
Confidence 1237777777776654 343322 234444 34321 234566665 56889999
Q ss_pred EEEEeecCCCCccccCceEEEEEEeeCCceEEEcc--ccCeeEEEe--cCEEEEEEeeCCceeeeEEeecceeEEEEeee
Q psy92 301 DIIEVVPEPGQPLTKNKIKMIYAKEQKGPVTAICH--VAGFLVTAV--GQKIYIWQLKDNDLTGIAFIDTEVYIASMVSV 376 (638)
Q Consensus 301 ~i~~vvpe~g~~~t~~kLkl~~~~~~~G~V~al~~--~~g~Ll~av--g~~l~v~~l~~~~L~~~a~~d~~~~i~~i~~~ 376 (638)
++.. +++ +..+......++|++++- -+++++++. ..+|++|++...++... +......|+++...
T Consensus 210 d~~~-----~~~-----~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~-~~~~~~~v~~l~~s 278 (357)
T 4g56_B 210 DTRK-----PKP-----ATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQT-SAVHSQNITGLAYS 278 (357)
T ss_dssp CTTS-----SSC-----BCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEE-ECCCSSCEEEEEEC
T ss_pred ECCC-----Cce-----eeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCCcEeEE-EeccceeEEEEEEc
Confidence 7642 221 111111223567888763 345655543 45899999986554321 11122345666543
Q ss_pred --c-CEEEEeeccCcEEEEEEeccCCeEEEEeccCCCcceeeeecccCCCCCcccccccceeeeeeccccccccccccCC
Q psy92 377 --K-NLILVGDYARSIALLRYQPEYRTLSLVARDYKPTQPNSKGYYAGNPSRGIIDGSLVWKFLQLSLGERLEICKKIGS 453 (638)
Q Consensus 377 --~-~~IlvgD~~~Sv~ll~~~~~~~~l~~~arD~~~~~v~~~~~l~~~~~~~~vd~~~~~~~~~~~~gd~~~~~~r~~~ 453 (638)
+ .+|+.|..-..|.++ +.+..++...- .....|+++.|= ..
T Consensus 279 p~~~~~lasgs~D~~i~iw--d~~~~~~~~~~--~H~~~V~~vafs--------P~------------------------ 322 (357)
T 4g56_B 279 YHSSPFLASISEDCTVAVL--DADFSEVFRDL--SHRDFVTGVAWS--------PL------------------------ 322 (357)
T ss_dssp SSSSCCEEEEETTSCEEEE--CTTSCEEEEEC--CCSSCEEEEEEC--------SS------------------------
T ss_pred CCCCCEEEEEeCCCEEEEE--ECCCCcEeEEC--CCCCCEEEEEEe--------CC------------------------
Confidence 3 467777666667664 44444443321 234567887773 22
Q ss_pred cccccccCCCceeEEEEeCCCcEEEEEeCCC
Q psy92 454 KHNDILDEFSSMGFMISDKDKNVVLFMYQPE 484 (638)
Q Consensus 454 ~~~~~~~~~~~l~~l~aD~~~nl~v~~~~~~ 484 (638)
+.. .++.+..++.+.++..+.+
T Consensus 323 --------d~~-~l~s~s~Dg~v~iW~~~~~ 344 (357)
T 4g56_B 323 --------DHS-KFTTVGWDHKVLHHHLPSE 344 (357)
T ss_dssp --------STT-EEEEEETTSCEEEEECC--
T ss_pred --------CCC-EEEEEcCCCeEEEEECCCC
Confidence 222 3677788999999987543
No 65
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=96.19 E-value=0.36 Score=51.13 Aligned_cols=198 Identities=14% Similarity=0.137 Sum_probs=109.9
Q ss_pred cEEEEeecccCCCCcccceeEEEEEEEEeecCCCCccccCceEEEEE-EeeCCceEEEccc--cCeeEEEe--cCEEEEE
Q psy92 277 GYIALGTNYNYSEDVTCRGRILLFDIIEVVPEPGQPLTKNKIKMIYA-KEQKGPVTAICHV--AGFLVTAV--GQKIYIW 351 (638)
Q Consensus 277 ~~ivVGT~~~~~ed~~~~GrI~vf~i~~vvpe~g~~~t~~kLkl~~~-~~~~G~V~al~~~--~g~Ll~av--g~~l~v~ 351 (638)
.+|+.|. ..|.|.+|++.. +.. ....+..... ....++|++++-. ++.++++. ..+|++|
T Consensus 195 ~~l~s~~---------~dg~i~vwd~~~-----~~~-~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~ 259 (430)
T 2xyi_A 195 GYLLSAS---------DDHTICLWDINA-----TPK-EHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIW 259 (430)
T ss_dssp TEEEEEC---------TTSCEEEEETTS-----CCB-GGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEE
T ss_pred CeEEEEe---------CCCeEEEEeCCC-----CCC-CCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEE
Confidence 4888887 689999998753 110 0112221222 2456789988743 45555544 4689999
Q ss_pred EeeCCc-eeeeEEe-ecceeEEEEeee--c-CEEEEeeccCcEEEEEEeccCCeEEEEeccCCCcceeeeecccCCCCCc
Q psy92 352 QLKDND-LTGIAFI-DTEVYIASMVSV--K-NLILVGDYARSIALLRYQPEYRTLSLVARDYKPTQPNSKGYYAGNPSRG 426 (638)
Q Consensus 352 ~l~~~~-L~~~a~~-d~~~~i~~i~~~--~-~~IlvgD~~~Sv~ll~~~~~~~~l~~~arD~~~~~v~~~~~l~~~~~~~ 426 (638)
++...+ ......+ .....+.++... + .++++|..-..|.++.++.....+..+.. ....++++.+-
T Consensus 260 d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~--h~~~v~~i~~s------- 330 (430)
T 2xyi_A 260 DTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFES--HKDEIFQVQWS------- 330 (430)
T ss_dssp ETTCSCSSSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEC--CSSCEEEEEEC-------
T ss_pred ECCCCCCCcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeec--CCCCEEEEEEC-------
Confidence 998542 2222222 223456666654 3 37889988888888776543232333322 24457777774
Q ss_pred ccccccceeeeeeccccccccccccCCcccccccCCCceeEEEEeCCCcEEEEEeCCCCcCCC------CCceEEEEeee
Q psy92 427 IIDGSLVWKFLQLSLGERLEICKKIGSKHNDILDEFSSMGFMISDKDKNVVLFMYQPEARESN------GGHRLIKKTDF 500 (638)
Q Consensus 427 ~vd~~~~~~~~~~~~gd~~~~~~r~~~~~~~~~~~~~~l~~l~aD~~~nl~v~~~~~~~~~s~------~~~~L~~~~~f 500 (638)
.+ +.. .++++..++.|.++.......... +...+.....-
T Consensus 331 -p~--------------------------------~~~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (430)
T 2xyi_A 331 -PH--------------------------------NET-ILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGG 376 (430)
T ss_dssp -SS--------------------------------CTT-EEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCC
T ss_pred -CC--------------------------------CCC-EEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCC
Confidence 33 333 367778899999998865211100 00111111111
Q ss_pred ecCcceeeEEEEeccCCCCCCCCCCCCceEEEEEeCCCcEEEEEe
Q psy92 501 HLGQHVNTFFKIRCKPSSISDAPGARSRFLTWYASLDGALGFFLP 545 (638)
Q Consensus 501 ~lg~~v~~~~~~~~~~~~~~~~~~~~~~~~il~~t~~GsIg~l~p 545 (638)
.+..|+.+.-.+ .....++.++.+|.|-++-+
T Consensus 377 -h~~~v~~~~~~p------------~~~~~l~s~s~dg~i~iw~~ 408 (430)
T 2xyi_A 377 -HTAKISDFSWNP------------NEPWIICSVSEDNIMQVWQM 408 (430)
T ss_dssp -CSSCEEEEEECS------------SSTTEEEEEETTSEEEEEEE
T ss_pred -CCCCceEEEECC------------CCCCEEEEEECCCCEEEeEc
Confidence 134466553321 12336788888998887765
No 66
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=96.17 E-value=0.54 Score=48.44 Aligned_cols=142 Identities=15% Similarity=0.130 Sum_probs=84.4
Q ss_pred ccEEEEeecccCCCCcccceeEEEEEEEEeecCCCCccccCceEEEEEEee-------CCceEEEcccc-C--eeEEEec
Q psy92 276 RGYIALGTNYNYSEDVTCRGRILLFDIIEVVPEPGQPLTKNKIKMIYAKEQ-------KGPVTAICHVA-G--FLVTAVG 345 (638)
Q Consensus 276 ~~~ivVGT~~~~~ed~~~~GrI~vf~i~~vvpe~g~~~t~~kLkl~~~~~~-------~G~V~al~~~~-g--~Ll~avg 345 (638)
..+++.|+ ..|.|.+|++.. .+ .+..... .++|++++-.. | .|+++..
T Consensus 178 ~~~l~~~~---------~dg~v~iwd~~~-----------~~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~ 235 (416)
T 2pm9_A 178 AHVFASAG---------SSNFASIWDLKA-----------KK--EVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATG 235 (416)
T ss_dssp TTEEEEES---------SSSCEEEEETTT-----------TE--EEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEEC
T ss_pred CcEEEEEc---------CCCCEEEEECCC-----------CC--cceEEeccccccccCCceEEEEECCCCCCEEEEEEC
Confidence 47888887 678999998642 12 2222222 67899887432 2 4555544
Q ss_pred C----EEEEEEeeCC-ceeeeEEe-ecceeEEEEee---ecCEEEEeeccCcEEEEEEeccCCeEEEEeccCCCcceeee
Q psy92 346 Q----KIYIWQLKDN-DLTGIAFI-DTEVYIASMVS---VKNLILVGDYARSIALLRYQPEYRTLSLVARDYKPTQPNSK 416 (638)
Q Consensus 346 ~----~l~v~~l~~~-~L~~~a~~-d~~~~i~~i~~---~~~~IlvgD~~~Sv~ll~~~~~~~~l~~~arD~~~~~v~~~ 416 (638)
. +|++|++... +... .+. .....+.++.. .+++++.|..-..|.++..+. ...+..+. ....+++++
T Consensus 236 d~~~~~i~~~d~~~~~~~~~-~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~-~~~~~~~~--~~~~~v~~~ 311 (416)
T 2pm9_A 236 SDNDPSILIWDLRNANTPLQ-TLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPES-AEQLSQFP--ARGNWCFKT 311 (416)
T ss_dssp CSSSCCCCEEETTSTTSCSB-CCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSS-CCEEEEEE--CSSSCCCCE
T ss_pred CCCCceEEEEeCCCCCCCcE-EeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCC-Cccceeec--CCCCceEEE
Confidence 4 8999999864 2221 111 12345666664 467888888877777765432 22222222 223456677
Q ss_pred ecccCCCCCcccccccceeeeeeccccccccccccCCcccccccCCCceeEEEEeCCCcEEEEEeCCC
Q psy92 417 GYYAGNPSRGIIDGSLVWKFLQLSLGERLEICKKIGSKHNDILDEFSSMGFMISDKDKNVVLFMYQPE 484 (638)
Q Consensus 417 ~~l~~~~~~~~vd~~~~~~~~~~~~gd~~~~~~r~~~~~~~~~~~~~~l~~l~aD~~~nl~v~~~~~~ 484 (638)
.|- .| +.. .++.+..++.+.++.....
T Consensus 312 ~~s--------~~--------------------------------~~~-~l~s~~~d~~i~iw~~~~~ 338 (416)
T 2pm9_A 312 KFA--------PE--------------------------------APD-LFACASFDNKIEVQTLQNL 338 (416)
T ss_dssp EEC--------TT--------------------------------CTT-EEEECCSSSEEEEEESCCC
T ss_pred EEC--------CC--------------------------------CCC-EEEEEecCCcEEEEEccCC
Confidence 664 33 323 3777888999999987653
No 67
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=96.14 E-value=1.5 Score=45.08 Aligned_cols=84 Identities=13% Similarity=0.199 Sum_probs=54.7
Q ss_pred ceeEEEEEEEEeecCCCCccccCceEEEEEEeeCCceEEEccccCeeEEEecCEEEEEEeeCC-c-eeeeEEeecceeEE
Q psy92 294 RGRILLFDIIEVVPEPGQPLTKNKIKMIYAKEQKGPVTAICHVAGFLVTAVGQKIYIWQLKDN-D-LTGIAFIDTEVYIA 371 (638)
Q Consensus 294 ~GrI~vf~i~~vvpe~g~~~t~~kLkl~~~~~~~G~V~al~~~~g~Ll~avg~~l~v~~l~~~-~-L~~~a~~d~~~~i~ 371 (638)
.|.|.+|++.. -+.+...+..++|.+++--.+.++++...+|++|++.+. + +..... +..+.
T Consensus 80 d~~v~iWd~~~-------------~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~---~~~~~ 143 (355)
T 3vu4_A 80 KEVVHIWDDVK-------------KQDVSRIKVDAPVKDLFLSREFIVVSYGDVISVFKFGNPWKRITDDIR---FGGVC 143 (355)
T ss_dssp TTEEEEEETTT-------------TEEEEEEECSSCEEEEEECSSEEEEEETTEEEEEESSTTCCBSSCCEE---EEEEE
T ss_pred ccEEEEEECCC-------------CcEEEEEECCCceEEEEEcCCEEEEEEcCEEEEEECCCCceeeEEecc---CCceE
Confidence 45899998532 233445567889999998888899999999999999865 3 322221 22233
Q ss_pred EEeeecCEEEE--eeccCcEEEEEEe
Q psy92 372 SMVSVKNLILV--GDYARSIALLRYQ 395 (638)
Q Consensus 372 ~i~~~~~~Ilv--gD~~~Sv~ll~~~ 395 (638)
.+.. +++++ |..-..|.++...
T Consensus 144 ~~s~--~~la~~sg~~~g~v~iwd~~ 167 (355)
T 3vu4_A 144 EFSN--GLLVYSNEFNLGQIHITKLQ 167 (355)
T ss_dssp EEET--TEEEEEESSCTTCEEEEECC
T ss_pred EEEc--cEEEEeCCCcCcEEEEEECC
Confidence 3332 66666 5666677776554
No 68
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=96.13 E-value=0.49 Score=48.54 Aligned_cols=185 Identities=10% Similarity=0.077 Sum_probs=107.6
Q ss_pred cEEEEeecccCCCCcccceeEEEEEEEEeecCCCCccccCceEEEEE-EeeCCceEEEccc--cCeeEEEe--cCEEEEE
Q psy92 277 GYIALGTNYNYSEDVTCRGRILLFDIIEVVPEPGQPLTKNKIKMIYA-KEQKGPVTAICHV--AGFLVTAV--GQKIYIW 351 (638)
Q Consensus 277 ~~ivVGT~~~~~ed~~~~GrI~vf~i~~vvpe~g~~~t~~kLkl~~~-~~~~G~V~al~~~--~g~Ll~av--g~~l~v~ 351 (638)
.+++.|. ..|.|.+|++.. .+...... ....++|++++-. ++.++++. ...|++|
T Consensus 87 ~~l~s~~---------~dg~i~iwd~~~-----------~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iw 146 (383)
T 3ei3_B 87 TTVAVGS---------KGGDIILWDYDV-----------QNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLR 146 (383)
T ss_dssp TEEEEEE---------BTSCEEEEETTS-----------TTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEEE
T ss_pred CEEEEEc---------CCCeEEEEeCCC-----------cccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEE
Confidence 7899887 678999998742 12222222 2467899999743 34444443 3589999
Q ss_pred EeeCCceeeeEEee-cceeEEEEee--ecCEEEEeeccCcEEEEEEeccCCeEEEEeccCCCcceeeeecccCCCCCccc
Q psy92 352 QLKDNDLTGIAFID-TEVYIASMVS--VKNLILVGDYARSIALLRYQPEYRTLSLVARDYKPTQPNSKGYYAGNPSRGII 428 (638)
Q Consensus 352 ~l~~~~L~~~a~~d-~~~~i~~i~~--~~~~IlvgD~~~Sv~ll~~~~~~~~l~~~arD~~~~~v~~~~~l~~~~~~~~v 428 (638)
++..+.+....... ....+.++.. .++++++|+.-..|.++.. ....+..+.. ....++++.|- .
T Consensus 147 d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~--~~~~~~~~~~--h~~~v~~~~~~--------~ 214 (383)
T 3ei3_B 147 DFSGSVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL--DGHEIFKEKL--HKAKVTHAEFN--------P 214 (383)
T ss_dssp ETTSCEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEET--TSCEEEEEEC--SSSCEEEEEEC--------S
T ss_pred ECCCCceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEEC--CCCEEEEecc--CCCcEEEEEEC--------C
Confidence 99865444332221 1233555544 4689999998888777654 3333333322 33457777774 2
Q ss_pred ccccceeeeeeccccccccccccCCcccccccCCCceeEEEEeCCCcEEEEEeCCCCcCCCCCceEEEEeeeecCcceee
Q psy92 429 DGSLVWKFLQLSLGERLEICKKIGSKHNDILDEFSSMGFMISDKDKNVVLFMYQPEARESNGGHRLIKKTDFHLGQHVNT 508 (638)
Q Consensus 429 d~~~~~~~~~~~~gd~~~~~~r~~~~~~~~~~~~~~l~~l~aD~~~nl~v~~~~~~~~~s~~~~~L~~~~~f~lg~~v~~ 508 (638)
+ +..+ ++.+..++.+.++....... .+..+... .....|++
T Consensus 215 ~--------------------------------~~~~-l~s~~~d~~i~iwd~~~~~~---~~~~~~~~---~~~~~v~~ 255 (383)
T 3ei3_B 215 R--------------------------------CDWL-MATSSVDATVKLWDLRNIKD---KNSYIAEM---PHEKPVNA 255 (383)
T ss_dssp S--------------------------------CTTE-EEEEETTSEEEEEEGGGCCS---TTCEEEEE---ECSSCEEE
T ss_pred C--------------------------------CCCE-EEEEeCCCEEEEEeCCCCCc---ccceEEEe---cCCCceEE
Confidence 3 3223 77788899999998754211 11222222 23455665
Q ss_pred EEEEeccCCCCCCCCCCCCceEEEEEeCCCcEEEEE
Q psy92 509 FFKIRCKPSSISDAPGARSRFLTWYASLDGALGFFL 544 (638)
Q Consensus 509 ~~~~~~~~~~~~~~~~~~~~~~il~~t~~GsIg~l~ 544 (638)
+.-.+ .....++.++.+|.|-+.-
T Consensus 256 ~~~s~------------~~~~~l~~~~~d~~i~iwd 279 (383)
T 3ei3_B 256 AYFNP------------TDSTKLLTTDQRNEIRVYS 279 (383)
T ss_dssp EEECT------------TTSCEEEEEESSSEEEEEE
T ss_pred EEEcC------------CCCCEEEEEcCCCcEEEEE
Confidence 53211 0124577788888887764
No 69
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=96.13 E-value=0.15 Score=52.43 Aligned_cols=173 Identities=9% Similarity=0.051 Sum_probs=97.6
Q ss_pred EEEEeCCCceeecceeecC-CCceeEeEEEEEEeeccCccCCcccEEEEeecccCCCCcccceeEEEEEEEEeecCCCCc
Q psy92 234 VSLFSPFSWEEIPQTNFPL-HEWEHVLCLKNVSMEYEGTLSGLRGYIALGTNYNYSEDVTCRGRILLFDIIEVVPEPGQP 312 (638)
Q Consensus 234 i~lid~~t~~~i~~~~~~l-~~~E~v~si~~v~l~~~~~~~~~~~~ivVGT~~~~~ed~~~~GrI~vf~i~~vvpe~g~~ 312 (638)
|++.|..+.+... .+.+ .....|.+++ +... ...+++.|+ ..|.|.+|++..
T Consensus 98 i~iwd~~~~~~~~--~~~~~~h~~~v~~~~---~~~~-----~~~~l~s~~---------~d~~i~iwd~~~-------- 150 (383)
T 3ei3_B 98 IILWDYDVQNKTS--FIQGMGPGDAITGMK---FNQF-----NTNQLFVSS---------IRGATTLRDFSG-------- 150 (383)
T ss_dssp EEEEETTSTTCEE--EECCCSTTCBEEEEE---EETT-----EEEEEEEEE---------TTTEEEEEETTS--------
T ss_pred EEEEeCCCcccce--eeecCCcCCceeEEE---eCCC-----CCCEEEEEe---------CCCEEEEEECCC--------
Confidence 6666655444332 3333 2234455554 3221 247888887 678999998641
Q ss_pred cccCceEEEEE-EeeCCceEEEccc-cC-eeEEEe-cCEEEEEEeeCCceeeeEEeecceeEEEEeee--cC-EEEEeec
Q psy92 313 LTKNKIKMIYA-KEQKGPVTAICHV-AG-FLVTAV-GQKIYIWQLKDNDLTGIAFIDTEVYIASMVSV--KN-LILVGDY 385 (638)
Q Consensus 313 ~t~~kLkl~~~-~~~~G~V~al~~~-~g-~Ll~av-g~~l~v~~l~~~~L~~~a~~d~~~~i~~i~~~--~~-~IlvgD~ 385 (638)
..++.+.. ....++|++++-- +| +|+++. ...|++|++..+.+.... .....+.++... +. +++.|..
T Consensus 151 ---~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~--~h~~~v~~~~~~~~~~~~l~s~~~ 225 (383)
T 3ei3_B 151 ---SVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLDGHEIFKEK--LHKAKVTHAEFNPRCDWLMATSSV 225 (383)
T ss_dssp ---CEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETTSCEEEEEE--CSSSCEEEEEECSSCTTEEEEEET
T ss_pred ---CceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECCCCEEEEec--cCCCcEEEEEECCCCCCEEEEEeC
Confidence 23333322 1234778888632 34 444443 358999999544333222 223456666654 34 8888888
Q ss_pred cCcEEEEEEecc---CCeEEEEeccCCCcceeeeecccCCCCCccc-ccccceeeeeeccccccccccccCCcccccccC
Q psy92 386 ARSIALLRYQPE---YRTLSLVARDYKPTQPNSKGYYAGNPSRGII-DGSLVWKFLQLSLGERLEICKKIGSKHNDILDE 461 (638)
Q Consensus 386 ~~Sv~ll~~~~~---~~~l~~~arD~~~~~v~~~~~l~~~~~~~~v-d~~~~~~~~~~~~gd~~~~~~r~~~~~~~~~~~ 461 (638)
-..|.++..... ...+..++ ....++++.|- . |
T Consensus 226 d~~i~iwd~~~~~~~~~~~~~~~---~~~~v~~~~~s--------~~~-------------------------------- 262 (383)
T 3ei3_B 226 DATVKLWDLRNIKDKNSYIAEMP---HEKPVNAAYFN--------PTD-------------------------------- 262 (383)
T ss_dssp TSEEEEEEGGGCCSTTCEEEEEE---CSSCEEEEEEC--------TTT--------------------------------
T ss_pred CCEEEEEeCCCCCcccceEEEec---CCCceEEEEEc--------CCC--------------------------------
Confidence 788877765432 12233332 34567777774 3 3
Q ss_pred CCceeEEEEeCCCcEEEEEeCC
Q psy92 462 FSSMGFMISDKDKNVVLFMYQP 483 (638)
Q Consensus 462 ~~~l~~l~aD~~~nl~v~~~~~ 483 (638)
+. .++++..++.+.++....
T Consensus 263 ~~--~l~~~~~d~~i~iwd~~~ 282 (383)
T 3ei3_B 263 ST--KLLTTDQRNEIRVYSSYD 282 (383)
T ss_dssp SC--EEEEEESSSEEEEEETTB
T ss_pred CC--EEEEEcCCCcEEEEECCC
Confidence 32 477788899999988654
No 70
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=96.10 E-value=2.4 Score=51.02 Aligned_cols=259 Identities=12% Similarity=0.079 Sum_probs=138.7
Q ss_pred EcCCeEEEEEeCCCCCCCCCceeEEEeCC-CcccEEEEecCCCEEEEEEeeecCCCcccccCCccccccCCCCCCCCCCC
Q psy92 149 NAKSELRISVLPTHLSYDAPWPVRKVPLK-CTPHFLAYHLETKTYCIVTSTAEPSTDYYKFNGEDKELVTDPRDSRFIPP 227 (638)
Q Consensus 149 ~~~~~L~I~~l~~~~~~~~~~~~r~ipL~-~tp~ri~y~~~~~~~~V~~s~~~~~~~~~~~~~e~~e~~~~~~~~~~~~p 227 (638)
..++.++|-.+.+. -.+++++-. ..+..++++|..+.++.++.
T Consensus 634 ~~d~~i~vw~~~~~------~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~------------------------------ 677 (1249)
T 3sfz_A 634 GADKTLQVFKAETG------EKLLDIKAHEDEVLCCAFSSDDSYIATCSA------------------------------ 677 (1249)
T ss_dssp ETTSCEEEEETTTC------CEEEEECCCSSCEEEEEECTTSSEEEEEET------------------------------
T ss_pred eCCCeEEEEECCCC------CEEEEeccCCCCEEEEEEecCCCEEEEEeC------------------------------
Confidence 35677888777652 344555532 35778889988776554321
Q ss_pred cccccEEEEEeCCCceeecceeecCCCceeEeEEEEEEeeccCccCCcccEEEEeecccCCCCcccceeEEEEEEEEeec
Q psy92 228 LVSQFHVSLFSPFSWEEIPQTNFPLHEWEHVLCLKNVSMEYEGTLSGLRGYIALGTNYNYSEDVTCRGRILLFDIIEVVP 307 (638)
Q Consensus 228 ~~~~~~i~lid~~t~~~i~~~~~~l~~~E~v~si~~v~l~~~~~~~~~~~~ivVGT~~~~~ed~~~~GrI~vf~i~~vvp 307 (638)
...|++.|..+.+.+. .+.-. ...+.|+ .+... +...+++.|+ ..|.|.+|++..
T Consensus 678 ---d~~v~vwd~~~~~~~~--~~~~~-~~~v~~~---~~~~~----~~~~~l~sg~---------~d~~v~vwd~~~--- 732 (1249)
T 3sfz_A 678 ---DKKVKIWDSATGKLVH--TYDEH-SEQVNCC---HFTNK----SNHLLLATGS---------NDFFLKLWDLNQ--- 732 (1249)
T ss_dssp ---TSEEEEEETTTCCEEE--EEECC-SSCEEEE---EECSS----SSCCEEEEEE---------TTSCEEEEETTS---
T ss_pred ---CCeEEEEECCCCceEE--EEcCC-CCcEEEE---EEecC----CCceEEEEEe---------CCCeEEEEECCC---
Confidence 1247777776666553 33322 2234444 34322 1356777776 678999998642
Q ss_pred CCCCccccCceEEEEEEeeCCceEEEccc-cCe-eEEEe-cCEEEEEEeeCCceeeeEEe------------ecceeEEE
Q psy92 308 EPGQPLTKNKIKMIYAKEQKGPVTAICHV-AGF-LVTAV-GQKIYIWQLKDNDLTGIAFI------------DTEVYIAS 372 (638)
Q Consensus 308 e~g~~~t~~kLkl~~~~~~~G~V~al~~~-~g~-Ll~av-g~~l~v~~l~~~~L~~~a~~------------d~~~~i~~ 372 (638)
+ ..+..+ ....++|++++-. +|. |+++. ...|++|++...+....... +....+.+
T Consensus 733 --~-----~~~~~~--~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 803 (1249)
T 3sfz_A 733 --K-----ECRNTM--FGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKC 803 (1249)
T ss_dssp --S-----SEEEEE--CCCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCC
T ss_pred --c-----chhhee--cCCCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEE
Confidence 1 111111 2457889988632 344 44443 35899999986543221110 01112222
Q ss_pred Ee--eecCEEEEeeccCcEEEEEEeccCCeEEEEeccCCCcceeeeecccCCCCCcccccccceeeeeeccccccccccc
Q psy92 373 MV--SVKNLILVGDYARSIALLRYQPEYRTLSLVARDYKPTQPNSKGYYAGNPSRGIIDGSLVWKFLQLSLGERLEICKK 450 (638)
Q Consensus 373 i~--~~~~~IlvgD~~~Sv~ll~~~~~~~~l~~~arD~~~~~v~~~~~l~~~~~~~~vd~~~~~~~~~~~~gd~~~~~~r 450 (638)
+. ..+++++++. ...+.+ |+.........-.......++++.|- .+
T Consensus 804 ~~~s~dg~~l~~~~-~~~v~~--~d~~~~~~~~~~~~~~~~~v~~~~~s--------p~--------------------- 851 (1249)
T 3sfz_A 804 CSWSADGDKIIVAA-KNKVLL--FDIHTSGLLAEIHTGHHSTIQYCDFS--------PY--------------------- 851 (1249)
T ss_dssp CCBCTTSSEEEEEE-TTEEEE--EETTTCCEEEEEECSSSSCCCEEEEC--------SS---------------------
T ss_pred EEECCCCCEEEEEc-CCcEEE--EEecCCCceeEEcCCCCCceEEEEEc--------CC---------------------
Confidence 22 3456777765 344444 44443333333333344556676664 23
Q ss_pred cCCcccccccCCCceeEEEEeCCCcEEEEEeCCCCcCCCCCceEEEEeeeecCcceeeEEEEeccCCCCCCCCCCCCceE
Q psy92 451 IGSKHNDILDEFSSMGFMISDKDKNVVLFMYQPEARESNGGHRLIKKTDFHLGQHVNTFFKIRCKPSSISDAPGARSRFL 530 (638)
Q Consensus 451 ~~~~~~~~~~~~~~l~~l~aD~~~nl~v~~~~~~~~~s~~~~~L~~~~~f~lg~~v~~~~~~~~~~~~~~~~~~~~~~~~ 530 (638)
+. .++++..++.+.++..... +......-|. ..|+++.-.+ ....
T Consensus 852 -----------~~--~l~~~~~dg~v~vwd~~~~--------~~~~~~~~h~-~~v~~v~~sp-------------dg~~ 896 (1249)
T 3sfz_A 852 -----------DH--LAVIALSQYCVELWNIDSR--------LKVADCRGHL-SWVHGVMFSP-------------DGSS 896 (1249)
T ss_dssp -----------TT--EEEEECSSSCEEEEETTTT--------EEEEEECCCS-SCEEEEEECT-------------TSSE
T ss_pred -----------CC--EEEEEeCCCeEEEEEcCCC--------ceeeecCCCc-cceEEEEECC-------------CCCE
Confidence 32 4778888999999876542 2222222232 2344442211 1235
Q ss_pred EEEEeCCCcEEEEE
Q psy92 531 TWYASLDGALGFFL 544 (638)
Q Consensus 531 il~~t~~GsIg~l~ 544 (638)
++.++.+|.|-..-
T Consensus 897 l~s~s~dg~v~vw~ 910 (1249)
T 3sfz_A 897 FLTASDDQTIRVWE 910 (1249)
T ss_dssp EEEEETTSCEEEEE
T ss_pred EEEEeCCCeEEEEE
Confidence 77888888887754
No 71
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=96.10 E-value=1.7 Score=45.54 Aligned_cols=244 Identities=11% Similarity=0.103 Sum_probs=122.3
Q ss_pred eeEEecCCCCeEEEEecCCceEEEecCCCCCccEEecccCCC------CCCc-E-EEEEcCCeEEEEEeCCCCCCCCCce
Q psy92 99 QGVFLCGPHPAWLFLTSRGELRAHPMTIDGPVSTLAPFHNVN------CPRG-F-LYFNAKSELRISVLPTHLSYDAPWP 170 (638)
Q Consensus 99 ~~Vf~~g~~P~~i~~~~~~~l~~~pl~~~~~v~~~a~F~~~~------~~~g-f-l~~~~~~~L~I~~l~~~~~~~~~~~ 170 (638)
.++-...+.+.++..+..+.++++.+.....+..+. -|... .|+| + +....++.++|-.+... -.
T Consensus 112 ~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~-~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~------~~ 184 (410)
T 1vyh_C 112 TRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLK-GHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGF------EC 184 (410)
T ss_dssp EEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEEC-CCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSS------CE
T ss_pred EEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEe-ccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC------ce
Confidence 344444455555555666788887764322222221 11111 1222 2 22234566776665442 12
Q ss_pred eEEEeC-CCcccEEEEecCCCEEEEEEeeecCCCcccccCCccccccCCCCCCCCCCCcccccEEEEEeCCCceeeccee
Q psy92 171 VRKVPL-KCTPHFLAYHLETKTYCIVTSTAEPSTDYYKFNGEDKELVTDPRDSRFIPPLVSQFHVSLFSPFSWEEIPQTN 249 (638)
Q Consensus 171 ~r~ipL-~~tp~ri~y~~~~~~~~V~~s~~~~~~~~~~~~~e~~e~~~~~~~~~~~~p~~~~~~i~lid~~t~~~i~~~~ 249 (638)
++++.- ......++++|..+.++.+. . ...+++.|..+.+.+. .
T Consensus 185 ~~~~~~h~~~V~~v~~~p~~~~l~s~s-~--------------------------------D~~i~~wd~~~~~~~~--~ 229 (410)
T 1vyh_C 185 IRTMHGHDHNVSSVSIMPNGDHIVSAS-R--------------------------------DKTIKMWEVQTGYCVK--T 229 (410)
T ss_dssp EECCCCCSSCEEEEEECSSSSEEEEEE-T--------------------------------TSEEEEEETTTCCEEE--E
T ss_pred eEEEcCCCCCEEEEEEeCCCCEEEEEe-C--------------------------------CCeEEEEECCCCcEEE--E
Confidence 233322 23466778888766544322 1 1246666655544432 2
Q ss_pred ecCCCceeEeEEEEEEeeccCccCCcccEEEEeecccCCCCcccceeEEEEEEEEeecCCCCccccCceEEEEEEeeCCc
Q psy92 250 FPLHEWEHVLCLKNVSMEYEGTLSGLRGYIALGTNYNYSEDVTCRGRILLFDIIEVVPEPGQPLTKNKIKMIYAKEQKGP 329 (638)
Q Consensus 250 ~~l~~~E~v~si~~v~l~~~~~~~~~~~~ivVGT~~~~~ed~~~~GrI~vf~i~~vvpe~g~~~t~~kLkl~~~~~~~G~ 329 (638)
+.-. .+.+.++ .+.. ...+++.|. ..|.|.+|++.. .+.... -....++
T Consensus 230 ~~~h-~~~v~~~---~~~~------~g~~l~s~s---------~D~~v~vwd~~~-----------~~~~~~-~~~h~~~ 278 (410)
T 1vyh_C 230 FTGH-REWVRMV---RPNQ------DGTLIASCS---------NDQTVRVWVVAT-----------KECKAE-LREHRHV 278 (410)
T ss_dssp EECC-SSCEEEE---EECT------TSSEEEEEE---------TTSCEEEEETTT-----------CCEEEE-ECCCSSC
T ss_pred EeCC-CccEEEE---EECC------CCCEEEEEc---------CCCeEEEEECCC-----------CceeeE-ecCCCce
Confidence 3211 1234333 3432 246788887 578899998632 111111 1234567
Q ss_pred eEEEcccc---------------------Ce-eEEEe-cCEEEEEEeeCCceeeeEEeecceeEEEEee--ecCEEEEee
Q psy92 330 VTAICHVA---------------------GF-LVTAV-GQKIYIWQLKDNDLTGIAFIDTEVYIASMVS--VKNLILVGD 384 (638)
Q Consensus 330 V~al~~~~---------------------g~-Ll~av-g~~l~v~~l~~~~L~~~a~~d~~~~i~~i~~--~~~~IlvgD 384 (638)
|++++-.. |. |++|. ..+|++|++...+.... +......|.++.. .+.+|+.|.
T Consensus 279 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~-~~~h~~~v~~v~~~~~g~~l~s~s 357 (410)
T 1vyh_C 279 VECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMT-LVGHDNWVRGVLFHSGGKFILSCA 357 (410)
T ss_dssp EEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEE-EECCSSCEEEEEECSSSSCEEEEE
T ss_pred EEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEE-EECCCCcEEEEEEcCCCCEEEEEe
Confidence 77775321 33 44443 34899999986653321 1112334555554 467888888
Q ss_pred ccCcEEEEEEeccCCeEEEEeccCCCcceeeeecc
Q psy92 385 YARSIALLRYQPEYRTLSLVARDYKPTQPNSKGYY 419 (638)
Q Consensus 385 ~~~Sv~ll~~~~~~~~l~~~arD~~~~~v~~~~~l 419 (638)
.-..|.+..++.. ..+..+. .....|+++.|-
T Consensus 358 ~D~~i~vwd~~~~-~~~~~~~--~h~~~v~~l~~~ 389 (410)
T 1vyh_C 358 DDKTLRVWDYKNK-RCMKTLN--AHEHFVTSLDFH 389 (410)
T ss_dssp TTTEEEEECCTTS-CCCEEEE--CCSSCEEEEEEC
T ss_pred CCCeEEEEECCCC-ceEEEEc--CCCCcEEEEEEc
Confidence 8778888765432 2222222 223457777774
No 72
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=96.07 E-value=1.4 Score=44.13 Aligned_cols=163 Identities=12% Similarity=0.110 Sum_probs=82.4
Q ss_pred EEEEEeCCCceeecceeecCCCceeEeEEEEEEeeccCccCCcccEEEEeecccCCCCcccceeEEEEEEEEeecCCCCc
Q psy92 233 HVSLFSPFSWEEIPQTNFPLHEWEHVLCLKNVSMEYEGTLSGLRGYIALGTNYNYSEDVTCRGRILLFDIIEVVPEPGQP 312 (638)
Q Consensus 233 ~i~lid~~t~~~i~~~~~~l~~~E~v~si~~v~l~~~~~~~~~~~~ivVGT~~~~~ed~~~~GrI~vf~i~~vvpe~g~~ 312 (638)
.|++.|..+.+.+. .+. ....+.++ .+.. ...++++|+... ....|.|.+|++........-.
T Consensus 97 ~i~iwd~~~~~~~~--~~~--~~~~v~~~---~~~~------~~~~l~~~~~~~----~~~~g~i~~~d~~~~~~~~~~~ 159 (369)
T 3zwl_B 97 SIKLWDVSNGQCVA--TWK--SPVPVKRV---EFSP------CGNYFLAILDNV----MKNPGSINIYEIERDSATHELT 159 (369)
T ss_dssp EEEEEETTTCCEEE--EEE--CSSCEEEE---EECT------TSSEEEEEECCB----TTBCCEEEEEEEEECTTTCCEE
T ss_pred eEEEEECCCCcEEE--Eee--cCCCeEEE---EEcc------CCCEEEEecCCc----cCCCCEEEEEEecCCccceeec
Confidence 47777766666554 344 22334444 3432 246788877321 1235999999997621000000
Q ss_pred -cccCceEEEEEEeeCC--ceEEEcc-ccC-eeEEE-ecCEEEEEEeeC-CceeeeEEeecceeEEEEee--ecCEEEEe
Q psy92 313 -LTKNKIKMIYAKEQKG--PVTAICH-VAG-FLVTA-VGQKIYIWQLKD-NDLTGIAFIDTEVYIASMVS--VKNLILVG 383 (638)
Q Consensus 313 -~t~~kLkl~~~~~~~G--~V~al~~-~~g-~Ll~a-vg~~l~v~~l~~-~~L~~~a~~d~~~~i~~i~~--~~~~Ilvg 383 (638)
.....+..+. ...+ .+++++- -+| .|+++ ....|++|++.. .+.... +......+.++.. .++++++|
T Consensus 160 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~ 236 (369)
T 3zwl_B 160 KVSEEPIHKII--THEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDS-IDLHEKSISDMQFSPDLTYFITS 236 (369)
T ss_dssp EECSSCSEEEE--CCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEE-EECCSSCEEEEEECTTSSEEEEE
T ss_pred ccccceeeecc--CCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEE-EecCCCceeEEEECCCCCEEEEe
Confidence 0000111111 2233 7777763 234 44444 335899999986 333221 1122344555554 46789999
Q ss_pred eccCcEEEEEEeccCCeEEEEeccCCCcceeeeecc
Q psy92 384 DYARSIALLRYQPEYRTLSLVARDYKPTQPNSKGYY 419 (638)
Q Consensus 384 D~~~Sv~ll~~~~~~~~l~~~arD~~~~~v~~~~~l 419 (638)
..-..|.++..+. ...+..+. ....+.++.+-
T Consensus 237 ~~d~~i~v~d~~~-~~~~~~~~---~~~~~~~~~~~ 268 (369)
T 3zwl_B 237 SRDTNSFLVDVST-LQVLKKYE---TDCPLNTAVIT 268 (369)
T ss_dssp ETTSEEEEEETTT-CCEEEEEE---CSSCEEEEEEC
T ss_pred cCCceEEEEECCC-Cceeeeec---CCCCceeEEec
Confidence 8877777765432 12222222 33445666553
No 73
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=96.07 E-value=1.5 Score=44.63 Aligned_cols=188 Identities=12% Similarity=0.086 Sum_probs=107.5
Q ss_pred ccEEEEeecccCCCCcccceeEEEEEEEEeecCCCCccccCceEEEEEEeeCCceEEEcc-ccCeeEEEe--cCEEEEEE
Q psy92 276 RGYIALGTNYNYSEDVTCRGRILLFDIIEVVPEPGQPLTKNKIKMIYAKEQKGPVTAICH-VAGFLVTAV--GQKIYIWQ 352 (638)
Q Consensus 276 ~~~ivVGT~~~~~ed~~~~GrI~vf~i~~vvpe~g~~~t~~kLkl~~~~~~~G~V~al~~-~~g~Ll~av--g~~l~v~~ 352 (638)
..+|+.|. ..|.|.+|++.. + ....+........++|++++- -+|.++++. ..++++|+
T Consensus 28 g~~las~~---------~D~~i~iw~~~~-----~----~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~ 89 (345)
T 3fm0_A 28 GTLLASCG---------GDRRIRIWGTEG-----D----SWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWK 89 (345)
T ss_dssp SSCEEEEE---------TTSCEEEEEEET-----T----EEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred CCEEEEEc---------CCCeEEEEEcCC-----C----cceeeeeeccccCCcEEEEEECCCCCEEEEEECCCcEEEEE
Confidence 36777776 578999999753 1 011122222345788999873 245444443 35899999
Q ss_pred eeCCceeeeEEeec-ceeEEEEee--ecCEEEEeeccCcEEEEEEeccCC-eEEEEeccCCCcceeeeecccCCCCCccc
Q psy92 353 LKDNDLTGIAFIDT-EVYIASMVS--VKNLILVGDYARSIALLRYQPEYR-TLSLVARDYKPTQPNSKGYYAGNPSRGII 428 (638)
Q Consensus 353 l~~~~L~~~a~~d~-~~~i~~i~~--~~~~IlvgD~~~Sv~ll~~~~~~~-~l~~~arD~~~~~v~~~~~l~~~~~~~~v 428 (638)
+...++..+..+.. ...|.++.. .+++++.|..-..|.+...+.... .....- ......+.++.|- .
T Consensus 90 ~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~-~~h~~~v~~~~~~--------p 160 (345)
T 3fm0_A 90 KNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVL-NSHTQDVKHVVWH--------P 160 (345)
T ss_dssp ECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEE-CCCCSCEEEEEEC--------S
T ss_pred ccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEe-cCcCCCeEEEEEC--------C
Confidence 98666544444432 234566654 468999999999999888765322 111111 2233456676664 3
Q ss_pred ccccceeeeeeccccccccccccCCcccccccCCCceeEEEEeCCCcEEEEEeCCCCcCCCCCceEEEEeeee-cCccee
Q psy92 429 DGSLVWKFLQLSLGERLEICKKIGSKHNDILDEFSSMGFMISDKDKNVVLFMYQPEARESNGGHRLIKKTDFH-LGQHVN 507 (638)
Q Consensus 429 d~~~~~~~~~~~~gd~~~~~~r~~~~~~~~~~~~~~l~~l~aD~~~nl~v~~~~~~~~~s~~~~~L~~~~~f~-lg~~v~ 507 (638)
+ +. .++.+..++.+.++..... .......+. ....|+
T Consensus 161 ~--------------------------------~~--~l~s~s~d~~i~~w~~~~~--------~~~~~~~~~~h~~~v~ 198 (345)
T 3fm0_A 161 S--------------------------------QE--LLASASYDDTVKLYREEED--------DWVCCATLEGHESTVW 198 (345)
T ss_dssp S--------------------------------SS--CEEEEETTSCEEEEEEETT--------EEEEEEEECCCSSCEE
T ss_pred C--------------------------------CC--EEEEEeCCCcEEEEEecCC--------CEEEEEEecCCCCceE
Confidence 3 32 3778888999999876432 222222221 123444
Q ss_pred eEEEEeccCCCCCCCCCCCCceEEEEEeCCCcEEEEEe
Q psy92 508 TFFKIRCKPSSISDAPGARSRFLTWYASLDGALGFFLP 545 (638)
Q Consensus 508 ~~~~~~~~~~~~~~~~~~~~~~~il~~t~~GsIg~l~p 545 (638)
++.-. . ....++.++.||.|-+.-.
T Consensus 199 ~l~~s------------p-~g~~l~s~s~D~~v~iW~~ 223 (345)
T 3fm0_A 199 SLAFD------------P-SGQRLASCSDDRTVRIWRQ 223 (345)
T ss_dssp EEEEC------------T-TSSEEEEEETTSCEEEEEE
T ss_pred EEEEC------------C-CCCEEEEEeCCCeEEEecc
Confidence 44221 1 1235777888998877643
No 74
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=96.06 E-value=2.1 Score=46.30 Aligned_cols=116 Identities=9% Similarity=0.144 Sum_probs=67.6
Q ss_pred ccEEEEeecccCCCCcccceeEEEEEEEEeecCCCCccccCceEEEEEEeeCCceEEEcc-ccCeeEEEe--cCEEEEEE
Q psy92 276 RGYIALGTNYNYSEDVTCRGRILLFDIIEVVPEPGQPLTKNKIKMIYAKEQKGPVTAICH-VAGFLVTAV--GQKIYIWQ 352 (638)
Q Consensus 276 ~~~ivVGT~~~~~ed~~~~GrI~vf~i~~vvpe~g~~~t~~kLkl~~~~~~~G~V~al~~-~~g~Ll~av--g~~l~v~~ 352 (638)
..+++.|. ..|.|.+|+.. + ..++. .....++|++++- -+|+++++. ..+|++|+
T Consensus 438 ~~~l~~~~---------~d~~v~~w~~~------~-----~~~~~--~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~ 495 (577)
T 2ymu_A 438 DQTIASAS---------DDKTVKLWNRN------G-----QLLQT--LTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN 495 (577)
T ss_dssp SSEEEEEE---------TTSEEEEEETT------S-----CEEEE--EECCSSCEEEEEECTTSCEEEEEETTSEEEEEE
T ss_pred CCEEEEEc---------CCCEEEEEECC------C-----CEEEE--EcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEc
Confidence 46788776 56889999731 1 12222 2345788998863 356555543 35899999
Q ss_pred eeCCceeeeEEeecceeEEEEee--ecCEEEEeeccCcEEEEEEeccCCeEEEEeccCCCcceeeeecc
Q psy92 353 LKDNDLTGIAFIDTEVYIASMVS--VKNLILVGDYARSIALLRYQPEYRTLSLVARDYKPTQPNSKGYY 419 (638)
Q Consensus 353 l~~~~L~~~a~~d~~~~i~~i~~--~~~~IlvgD~~~Sv~ll~~~~~~~~l~~~arD~~~~~v~~~~~l 419 (638)
...+.+.... .-...|+++.. .+.+++.|+.-..|.++. .....+..+. .....|+++.|.
T Consensus 496 ~~~~~~~~~~--~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd--~~~~~~~~~~--~h~~~v~~~~fs 558 (577)
T 2ymu_A 496 RNGQLLQTLT--GHSSSVRGVAFSPDGQTIASASDDKTVKLWN--RNGQLLQTLT--GHSSSVWGVAFS 558 (577)
T ss_dssp TTSCEEEEEE--CCSSCEEEEEECTTSSCEEEEETTSEEEEEC--TTSCEEEEEE--CCSSCEEEEEEC
T ss_pred CCCCEEEEEe--CCCCCEEEEEEcCCCCEEEEEECcCEEEEEe--CCCCEEEEEc--CCCCCEEEEEEc
Confidence 6533232221 12234555554 467888898888887764 3333333332 234567888886
No 75
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=96.04 E-value=1.4 Score=43.96 Aligned_cols=217 Identities=10% Similarity=0.109 Sum_probs=121.6
Q ss_pred cCCeEEEEEeCCCCCCCCCceeEEEeCCCc-ccEEEEecCCCEEEEEEeeecCCCcccccCCccccccCCCCCCCCCCCc
Q psy92 150 AKSELRISVLPTHLSYDAPWPVRKVPLKCT-PHFLAYHLETKTYCIVTSTAEPSTDYYKFNGEDKELVTDPRDSRFIPPL 228 (638)
Q Consensus 150 ~~~~L~I~~l~~~~~~~~~~~~r~ipL~~t-p~ri~y~~~~~~~~V~~s~~~~~~~~~~~~~e~~e~~~~~~~~~~~~p~ 228 (638)
.++.+++-.+.+ .-.++++..... .+.++++|..+.++.+..
T Consensus 33 ~dg~v~lWd~~~------~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~------------------------------- 75 (304)
T 2ynn_A 33 YSGRVELWNYET------QVEVRSIQVTETPVRAGKFIARKNWIIVGSD------------------------------- 75 (304)
T ss_dssp TTSEEEEEETTT------TEEEEEEECCSSCEEEEEEEGGGTEEEEEET-------------------------------
T ss_pred CCCcEEEEECCC------CceeEEeeccCCcEEEEEEeCCCCEEEEECC-------------------------------
Confidence 467777776654 345666665543 566788887766554321
Q ss_pred ccccEEEEEeCCCceeecceeecCCCceeEeEEEEEEeeccCccCCcccEEEEeecccCCCCcccceeEEEEEEEEeecC
Q psy92 229 VSQFHVSLFSPFSWEEIPQTNFPLHEWEHVLCLKNVSMEYEGTLSGLRGYIALGTNYNYSEDVTCRGRILLFDIIEVVPE 308 (638)
Q Consensus 229 ~~~~~i~lid~~t~~~i~~~~~~l~~~E~v~si~~v~l~~~~~~~~~~~~ivVGT~~~~~ed~~~~GrI~vf~i~~vvpe 308 (638)
...|++.|..+.+.+. .+.-.. ..|.|+ .+.. ...+++.|. ..|.|.+|++..
T Consensus 76 --d~~i~vwd~~~~~~~~--~~~~h~-~~v~~~---~~~~------~~~~l~sgs---------~D~~v~lWd~~~---- 128 (304)
T 2ynn_A 76 --DFRIRVFNYNTGEKVV--DFEAHP-DYIRSI---AVHP------TKPYVLSGS---------DDLTVKLWNWEN---- 128 (304)
T ss_dssp --TSEEEEEETTTCCEEE--EEECCS-SCEEEE---EECS------SSSEEEEEE---------TTSCEEEEEGGG----
T ss_pred --CCEEEEEECCCCcEEE--EEeCCC-CcEEEE---EEcC------CCCEEEEEC---------CCCeEEEEECCC----
Confidence 1347777777666543 333222 235554 3432 246888887 678999998742
Q ss_pred CCCccccCceEEEEEEeeCCceEEEccc--cCeeEEE--ecCEEEEEEeeCCceeeeEEeecceeEEEEee----ecCEE
Q psy92 309 PGQPLTKNKIKMIYAKEQKGPVTAICHV--AGFLVTA--VGQKIYIWQLKDNDLTGIAFIDTEVYIASMVS----VKNLI 380 (638)
Q Consensus 309 ~g~~~t~~kLkl~~~~~~~G~V~al~~~--~g~Ll~a--vg~~l~v~~l~~~~L~~~a~~d~~~~i~~i~~----~~~~I 380 (638)
..++... -....++|++++-- ++.++++ ...+|++|++...+............+..+.. .+.++
T Consensus 129 ------~~~~~~~-~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l 201 (304)
T 2ynn_A 129 ------NWALEQT-FEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYM 201 (304)
T ss_dssp ------TTEEEEE-ECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEE
T ss_pred ------Ccchhhh-hcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEE
Confidence 1222221 12356889988743 4444443 34589999997543221111111122333332 34588
Q ss_pred EEeeccCcEEEEEEeccCCeEEEEeccCCCcceeeeecccCCCCCcccccccceeeeeeccccccccccccCCccccccc
Q psy92 381 LVGDYARSIALLRYQPEYRTLSLVARDYKPTQPNSKGYYAGNPSRGIIDGSLVWKFLQLSLGERLEICKKIGSKHNDILD 460 (638)
Q Consensus 381 lvgD~~~Sv~ll~~~~~~~~l~~~arD~~~~~v~~~~~l~~~~~~~~vd~~~~~~~~~~~~gd~~~~~~r~~~~~~~~~~ 460 (638)
+.|..-..|.+...+ ..+....-. .....++++.|- .+
T Consensus 202 ~s~s~D~~i~iWd~~--~~~~~~~~~-~h~~~v~~~~~~--------p~------------------------------- 239 (304)
T 2ynn_A 202 ITASDDLTIKIWDYQ--TKSCVATLE-GHMSNVSFAVFH--------PT------------------------------- 239 (304)
T ss_dssp EEEETTSEEEEEETT--TTEEEEEEE-CCSSCEEEEEEC--------SS-------------------------------
T ss_pred EEEcCCCeEEEEeCC--CCccceeeC-CCCCCEEEEEEC--------CC-------------------------------
Confidence 888887777776543 233222111 223456666664 23
Q ss_pred CCCceeEEEEeCCCcEEEEEeC
Q psy92 461 EFSSMGFMISDKDKNVVLFMYQ 482 (638)
Q Consensus 461 ~~~~l~~l~aD~~~nl~v~~~~ 482 (638)
++ .++.+..+|.+.++...
T Consensus 240 -~~--~l~s~s~Dg~i~iWd~~ 258 (304)
T 2ynn_A 240 -LP--IIISGSEDGTLKIWNSS 258 (304)
T ss_dssp -SS--EEEEEETTSCEEEEETT
T ss_pred -CC--EEEEEcCCCeEEEEECC
Confidence 32 47788899999998754
No 76
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=96.00 E-value=0.33 Score=49.61 Aligned_cols=146 Identities=12% Similarity=0.178 Sum_probs=87.3
Q ss_pred ccEEEEeecccCCCCcccceeEEEEEEEEeecCCCCccccCceE--EEEEE------eeCCceEEEccc--cCe-eEEEe
Q psy92 276 RGYIALGTNYNYSEDVTCRGRILLFDIIEVVPEPGQPLTKNKIK--MIYAK------EQKGPVTAICHV--AGF-LVTAV 344 (638)
Q Consensus 276 ~~~ivVGT~~~~~ed~~~~GrI~vf~i~~vvpe~g~~~t~~kLk--l~~~~------~~~G~V~al~~~--~g~-Ll~av 344 (638)
..+|+.|+ ..|.|.+|++.. +.. ...+. ..... ...++|++++-. ++. |+++.
T Consensus 56 ~~~l~~~~---------~dg~i~iw~~~~-----~~~--~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~ 119 (408)
T 4a11_B 56 GRYMLSGG---------SDGVIVLYDLEN-----SSR--QSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSS 119 (408)
T ss_dssp CCEEEEEE---------TTSCEEEEECCC-----CSS--SSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEE
T ss_pred CCEEEEEc---------CCCeEEEEECCC-----Ccc--cceEeccccccccccccccCCCcEEEEEEccCCCcEEEEEe
Confidence 47888888 678999999764 111 11121 11111 267899999743 443 44443
Q ss_pred -cCEEEEEEeeCCceeeeEEeecceeEEEEee-----ecCEEEEeeccCcEEEEEEeccCCeEEEEeccCCCcceeeeec
Q psy92 345 -GQKIYIWQLKDNDLTGIAFIDTEVYIASMVS-----VKNLILVGDYARSIALLRYQPEYRTLSLVARDYKPTQPNSKGY 418 (638)
Q Consensus 345 -g~~l~v~~l~~~~L~~~a~~d~~~~i~~i~~-----~~~~IlvgD~~~Sv~ll~~~~~~~~l~~~arD~~~~~v~~~~~ 418 (638)
...|++|++...+..... .....+..+.. .+.++++|..-..|.++...... .+..+. .....++++.|
T Consensus 120 ~d~~i~iwd~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~-~~~~~~--~~~~~v~~~~~ 194 (408)
T 4a11_B 120 FDKTLKVWDTNTLQTADVF--NFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGS-CSHILQ--GHRQEILAVSW 194 (408)
T ss_dssp TTSEEEEEETTTTEEEEEE--ECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSC-CCEEEC--CCCSCEEEEEE
T ss_pred CCCeEEEeeCCCCccceec--cCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcc-eeeeec--CCCCcEEEEEE
Confidence 468999999876654433 23333444333 23489999988888887654322 222221 23345777777
Q ss_pred ccCCCCCcccccccceeeeeeccccccccccccCCcccccccCCCceeEEEEeCCCcEEEEEeCC
Q psy92 419 YAGNPSRGIIDGSLVWKFLQLSLGERLEICKKIGSKHNDILDEFSSMGFMISDKDKNVVLFMYQP 483 (638)
Q Consensus 419 l~~~~~~~~vd~~~~~~~~~~~~gd~~~~~~r~~~~~~~~~~~~~~l~~l~aD~~~nl~v~~~~~ 483 (638)
- .+ +..+ ++++..+|.+.++....
T Consensus 195 ~--------~~--------------------------------~~~l-l~~~~~dg~i~i~d~~~ 218 (408)
T 4a11_B 195 S--------PR--------------------------------YDYI-LATASADSRVKLWDVRR 218 (408)
T ss_dssp C--------SS--------------------------------CTTE-EEEEETTSCEEEEETTC
T ss_pred C--------CC--------------------------------CCcE-EEEEcCCCcEEEEECCC
Confidence 4 33 3323 67888999999998754
No 77
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=96.00 E-value=0.94 Score=46.96 Aligned_cols=179 Identities=9% Similarity=0.032 Sum_probs=97.9
Q ss_pred EcCCeEEEEEeCCCCCCCCCceeEEEe---CCCcccEEEEecCCCEEEEEEeeecCCCcccccCCccccccCCCCCCCCC
Q psy92 149 NAKSELRISVLPTHLSYDAPWPVRKVP---LKCTPHFLAYHLETKTYCIVTSTAEPSTDYYKFNGEDKELVTDPRDSRFI 225 (638)
Q Consensus 149 ~~~~~L~I~~l~~~~~~~~~~~~r~ip---L~~tp~ri~y~~~~~~~~V~~s~~~~~~~~~~~~~e~~e~~~~~~~~~~~ 225 (638)
..++.++|-.+.. .-.++++. -...+..++++|..+.++.++.
T Consensus 151 ~~dg~i~iwd~~~------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---------------------------- 196 (402)
T 2aq5_A 151 GCDNVILVWDVGT------GAAVLTLGPDVHPDTIYSVDWSRDGALICTSCR---------------------------- 196 (402)
T ss_dssp ETTSCEEEEETTT------TEEEEEECTTTCCSCEEEEEECTTSSCEEEEET----------------------------
T ss_pred cCCCEEEEEECCC------CCccEEEecCCCCCceEEEEECCCCCEEEEEec----------------------------
Confidence 3567788877665 23455552 2345777888887666554331
Q ss_pred CCcccccEEEEEeCCCceeecceee-cCCCceeEeEEEEEEeeccCccCCcccEEEEeecccCCCCcccceeEEEEEEEE
Q psy92 226 PPLVSQFHVSLFSPFSWEEIPQTNF-PLHEWEHVLCLKNVSMEYEGTLSGLRGYIALGTNYNYSEDVTCRGRILLFDIIE 304 (638)
Q Consensus 226 ~p~~~~~~i~lid~~t~~~i~~~~~-~l~~~E~v~si~~v~l~~~~~~~~~~~~ivVGT~~~~~ed~~~~GrI~vf~i~~ 304 (638)
...|+++|..+.+.+. .+ .......+.++. +.. ...++++|... ...|.|.+|++..
T Consensus 197 -----d~~i~iwd~~~~~~~~--~~~~~~~~~~~~~~~---~~~------~~~~l~~g~~~------~~d~~i~iwd~~~ 254 (402)
T 2aq5_A 197 -----DKRVRVIEPRKGTVVA--EKDRPHEGTRPVHAV---FVS------EGKILTTGFSR------MSERQVALWDTKH 254 (402)
T ss_dssp -----TSEEEEEETTTTEEEE--EEECSSCSSSCCEEE---ECS------TTEEEEEEECT------TCCEEEEEEETTB
T ss_pred -----CCcEEEEeCCCCceee--eeccCCCCCcceEEE---EcC------CCcEEEEeccC------CCCceEEEEcCcc
Confidence 1358888887777654 34 233333344433 322 24688888321 1579999998753
Q ss_pred eecCCCCccccCceEEEEEEeeCCceEEEcc-ccC-eeEEEe--cCEEEEEEeeCCc--eeeeEEeecceeEEEEeee--
Q psy92 305 VVPEPGQPLTKNKIKMIYAKEQKGPVTAICH-VAG-FLVTAV--GQKIYIWQLKDND--LTGIAFIDTEVYIASMVSV-- 376 (638)
Q Consensus 305 vvpe~g~~~t~~kLkl~~~~~~~G~V~al~~-~~g-~Ll~av--g~~l~v~~l~~~~--L~~~a~~d~~~~i~~i~~~-- 376 (638)
. ............+.|.+++- -+| +|+++. ...|++|++.+++ +.....+.....+.++...
T Consensus 255 ~----------~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~ 324 (402)
T 2aq5_A 255 L----------EEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPK 324 (402)
T ss_dssp C----------SSCSEEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEECCG
T ss_pred c----------cCCceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccccCCcccceEEecc
Confidence 1 11111222244567777752 234 444333 4589999999665 5554444434455555543
Q ss_pred cCEEEEeeccCcEEEEEEe
Q psy92 377 KNLILVGDYARSIALLRYQ 395 (638)
Q Consensus 377 ~~~IlvgD~~~Sv~ll~~~ 395 (638)
+.+++.+|- .+.++...
T Consensus 325 ~~~~~s~~~--~~~~~~l~ 341 (402)
T 2aq5_A 325 RGLEVNKCE--IARFYKLH 341 (402)
T ss_dssp GGSCGGGTE--EEEEEEEE
T ss_pred cccceecce--eEEEEEcC
Confidence 334443332 45555544
No 78
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=95.95 E-value=0.32 Score=48.93 Aligned_cols=144 Identities=14% Similarity=0.085 Sum_probs=89.4
Q ss_pred ccEEEEeecccCCCCcccceeEEEEEEEEeecCCCCccccCceEEEEEEe---eCCceEEEcccc-----Ce-eEEE-ec
Q psy92 276 RGYIALGTNYNYSEDVTCRGRILLFDIIEVVPEPGQPLTKNKIKMIYAKE---QKGPVTAICHVA-----GF-LVTA-VG 345 (638)
Q Consensus 276 ~~~ivVGT~~~~~ed~~~~GrI~vf~i~~vvpe~g~~~t~~kLkl~~~~~---~~G~V~al~~~~-----g~-Ll~a-vg 345 (638)
...+++++ ..|+|.+|++.. ...++.+.... ..+.|++++-.. |. |++| ..
T Consensus 34 ~~~~~~~~---------~~~~v~vw~~~~----------~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d 94 (366)
T 3k26_A 34 DPLVFATV---------GSNRVTLYECHS----------QGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSR 94 (366)
T ss_dssp SCEEEEEE---------ETTEEEEEEECG----------GGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEETT
T ss_pred CceEEEEC---------CCCEEEEEEcCC----------CcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecCC
Confidence 45666666 567999999863 22344444333 458899987432 33 4444 34
Q ss_pred CEEEEEEeeCCceeeeEEeecceeEEEEee---ecCEEEEeeccCcEEEEEEeccCCeEEEEec--cCCCcceeeeeccc
Q psy92 346 QKIYIWQLKDNDLTGIAFIDTEVYIASMVS---VKNLILVGDYARSIALLRYQPEYRTLSLVAR--DYKPTQPNSKGYYA 420 (638)
Q Consensus 346 ~~l~v~~l~~~~L~~~a~~d~~~~i~~i~~---~~~~IlvgD~~~Sv~ll~~~~~~~~l~~~ar--D~~~~~v~~~~~l~ 420 (638)
..|++|++...++... +......|.++.. .++++++|..-..|.++..+ ..+....-. ......++++.|-
T Consensus 95 g~i~v~d~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~--~~~~~~~~~~~~~~~~~v~~~~~~- 170 (366)
T 3k26_A 95 GIIRIINPITMQCIKH-YVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQ--TDTLVAIFGGVEGHRDEVLSADYD- 170 (366)
T ss_dssp CEEEEECTTTCCEEEE-EESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETT--TTEEEEEECSTTSCSSCEEEEEEC-
T ss_pred CEEEEEEchhceEeee-ecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEee--cCeEEEEecccccccCceeEEEEC-
Confidence 4899999986665432 1123445666665 46799999988888887653 333333221 3445567787774
Q ss_pred CCCCCcccccccceeeeeeccccccccccccCCcccccccCCCceeEEEEeCCCcEEEEEeCC
Q psy92 421 GNPSRGIIDGSLVWKFLQLSLGERLEICKKIGSKHNDILDEFSSMGFMISDKDKNVVLFMYQP 483 (638)
Q Consensus 421 ~~~~~~~vd~~~~~~~~~~~~gd~~~~~~r~~~~~~~~~~~~~~l~~l~aD~~~nl~v~~~~~ 483 (638)
.+ +. .++++..++.+.++....
T Consensus 171 -------~~--------------------------------~~--~l~~~~~dg~i~i~d~~~ 192 (366)
T 3k26_A 171 -------LL--------------------------------GE--KIMSCGMDHSLKLWRINS 192 (366)
T ss_dssp -------TT--------------------------------SS--EEEEEETTSCEEEEESCS
T ss_pred -------CC--------------------------------CC--EEEEecCCCCEEEEECCC
Confidence 23 32 477888899999998753
No 79
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=95.95 E-value=1.9 Score=44.74 Aligned_cols=183 Identities=14% Similarity=0.157 Sum_probs=103.8
Q ss_pred EEEEEc--CCeEEEEEeCCCCCCCCCceeEEEeCCCcccEEEEecCCCEEEEEEeeecCCCcccccCCccccccCCCCCC
Q psy92 145 FLYFNA--KSELRISVLPTHLSYDAPWPVRKVPLKCTPHFLAYHLETKTYCIVTSTAEPSTDYYKFNGEDKELVTDPRDS 222 (638)
Q Consensus 145 fl~~~~--~~~L~I~~l~~~~~~~~~~~~r~ipL~~tp~ri~y~~~~~~~~V~~s~~~~~~~~~~~~~e~~e~~~~~~~~ 222 (638)
.++++. ++.+++..+.. .-.++.++.+..|..++++|..+.++++...... .
T Consensus 225 ~l~~~~~~~~~i~~~d~~~------~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~------~-------------- 278 (433)
T 3bws_A 225 LVYCSNWISEDISVIDRKT------KLEIRKTDKIGLPRGLLLSKDGKELYIAQFSASN------Q-------------- 278 (433)
T ss_dssp EEEEEETTTTEEEEEETTT------TEEEEECCCCSEEEEEEECTTSSEEEEEEEESCT------T--------------
T ss_pred EEEEEecCCCcEEEEECCC------CcEEEEecCCCCceEEEEcCCCCEEEEEECCCCc------c--------------
Confidence 454433 56776665543 3457778888889999999988877665532110 0
Q ss_pred CCCCCcccccEEEEEeCCCceeecceeecCCCceeEeEEEEEEeeccCccCCcccEEEEeecccCCCCcccceeEEEEEE
Q psy92 223 RFIPPLVSQFHVSLFSPFSWEEIPQTNFPLHEWEHVLCLKNVSMEYEGTLSGLRGYIALGTNYNYSEDVTCRGRILLFDI 302 (638)
Q Consensus 223 ~~~~p~~~~~~i~lid~~t~~~i~~~~~~l~~~E~v~si~~v~l~~~~~~~~~~~~ivVGT~~~~~ed~~~~GrI~vf~i 302 (638)
......|.++|..+.+.+. .+... ..+.+ +.+... .+.+++.++ ..|+|.+|++
T Consensus 279 -----~~~dg~i~~~d~~~~~~~~--~~~~~--~~~~~---~~~~~~-----g~~l~~~~~---------~~~~v~v~d~ 332 (433)
T 3bws_A 279 -----ESGGGRLGIYSMDKEKLID--TIGPP--GNKRH---IVSGNT-----ENKIYVSDM---------CCSKIEVYDL 332 (433)
T ss_dssp -----CSCCEEEEEEETTTTEEEE--EEEEE--ECEEE---EEECSS-----TTEEEEEET---------TTTEEEEEET
T ss_pred -----ccCCCeEEEEECCCCcEEe--eccCC--CCcce---EEECCC-----CCEEEEEec---------CCCEEEEEEC
Confidence 0123568888887776654 22111 12333 334321 123444444 5689999986
Q ss_pred EEeecCCCCccccCceEEEEEEeeCCceEEEccc-cC-eeEEEecC----------------EEEEEEeeCCceeeeEEe
Q psy92 303 IEVVPEPGQPLTKNKIKMIYAKEQKGPVTAICHV-AG-FLVTAVGQ----------------KIYIWQLKDNDLTGIAFI 364 (638)
Q Consensus 303 ~~vvpe~g~~~t~~kLkl~~~~~~~G~V~al~~~-~g-~Ll~avg~----------------~l~v~~l~~~~L~~~a~~ 364 (638)
.. .+ .+......+.+.+++-- +| +|+++... .|++|++...++.. .+
T Consensus 333 ~~-----------~~--~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~--~~ 397 (433)
T 3bws_A 333 KE-----------KK--VQKSIPVFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKE--FW 397 (433)
T ss_dssp TT-----------TE--EEEEEECSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEE--EE
T ss_pred CC-----------Cc--EEEEecCCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEE--Ee
Confidence 31 12 23333456778877633 34 46555543 89999987665443 23
Q ss_pred ecceeEEEEee--ecCEEEEeec-cCcEEEEEE
Q psy92 365 DTEVYIASMVS--VKNLILVGDY-ARSIALLRY 394 (638)
Q Consensus 365 d~~~~i~~i~~--~~~~IlvgD~-~~Sv~ll~~ 394 (638)
.....+.++.. .++++++++. -..|.++..
T Consensus 398 ~~~~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~ 430 (433)
T 3bws_A 398 EAGNQPTGLDVSPDNRYLVISDFLDHQIRVYRR 430 (433)
T ss_dssp ECSSSEEEEEECTTSCEEEEEETTTTEEEEEEE
T ss_pred cCCCCCceEEEcCCCCEEEEEECCCCeEEEEEe
Confidence 33444555554 3568887775 456666544
No 80
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=95.93 E-value=1.7 Score=44.17 Aligned_cols=199 Identities=12% Similarity=0.115 Sum_probs=111.0
Q ss_pred ccEEEEeecccCCCCcccceeEEEEEEEEeecCCCCccccCceEEEEEE-eeCCceEEEcc-ccCe-eEEEe-cCEEEEE
Q psy92 276 RGYIALGTNYNYSEDVTCRGRILLFDIIEVVPEPGQPLTKNKIKMIYAK-EQKGPVTAICH-VAGF-LVTAV-GQKIYIW 351 (638)
Q Consensus 276 ~~~ivVGT~~~~~ed~~~~GrI~vf~i~~vvpe~g~~~t~~kLkl~~~~-~~~G~V~al~~-~~g~-Ll~av-g~~l~v~ 351 (638)
..+|+.|. ..|.|.+|++.. ....+.+... ...++|++++- -+|. |++|. ..+|++|
T Consensus 117 ~~~l~s~s---------~D~~v~iwd~~~----------~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w 177 (345)
T 3fm0_A 117 GNLLATCS---------RDKSVWVWEVDE----------EDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLY 177 (345)
T ss_dssp SSEEEEEE---------TTSCEEEEEECT----------TSCEEEEEEECCCCSCEEEEEECSSSSCEEEEETTSCEEEE
T ss_pred CCEEEEEE---------CCCeEEEEECCC----------CCCeEEEEEecCcCCCeEEEEECCCCCEEEEEeCCCcEEEE
Confidence 46888887 578999999853 1223333322 34678888863 2344 44443 4589999
Q ss_pred EeeCCceeeeEEeec-ceeEEEEee--ecCEEEEeeccCcEEEEEEeccCC-------------eEEEEeccCCCcceee
Q psy92 352 QLKDNDLTGIAFIDT-EVYIASMVS--VKNLILVGDYARSIALLRYQPEYR-------------TLSLVARDYKPTQPNS 415 (638)
Q Consensus 352 ~l~~~~L~~~a~~d~-~~~i~~i~~--~~~~IlvgD~~~Sv~ll~~~~~~~-------------~l~~~arD~~~~~v~~ 415 (638)
+....+......+.. ...|.++.. .+++++.|..-..|.+........ +.......+....+.+
T Consensus 178 ~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 257 (345)
T 3fm0_A 178 REEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYD 257 (345)
T ss_dssp EEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEE
T ss_pred EecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEE
Confidence 998776554444332 345666654 467999999888888876532110 1111111223344555
Q ss_pred eecccCCCCCcccccccceeeeeeccccccccccccCCcccccccCCCceeEEEEeCCCcEEEEEeCCCCcCCCCCceEE
Q psy92 416 KGYYAGNPSRGIIDGSLVWKFLQLSLGERLEICKKIGSKHNDILDEFSSMGFMISDKDKNVVLFMYQPEARESNGGHRLI 495 (638)
Q Consensus 416 ~~~l~~~~~~~~vd~~~~~~~~~~~~gd~~~~~~r~~~~~~~~~~~~~~l~~l~aD~~~nl~v~~~~~~~~~s~~~~~L~ 495 (638)
+.+- .+ +. .++.+..++.+.++..++...... ..+.
T Consensus 258 v~~~--------~~--------------------------------~~--~l~s~~~d~~i~vw~~~~~~~~~~--~~~~ 293 (345)
T 3fm0_A 258 IAWC--------QL--------------------------------TG--ALATACGDDAIRVFQEDPNSDPQQ--PTFS 293 (345)
T ss_dssp EEEC--------TT--------------------------------TC--CEEEEETTSCEEEEEECTTSCTTS--CCEE
T ss_pred EEEe--------cC--------------------------------CC--EEEEEeCCCeEEEEEeCCCCCcce--eeEE
Confidence 5553 22 22 367778899999998876422111 1222
Q ss_pred EEeeeec--CcceeeEEEEeccCCCCCCCCCCCCceEEEEEeCCCcEEEEEeCChh
Q psy92 496 KKTDFHL--GQHVNTFFKIRCKPSSISDAPGARSRFLTWYASLDGALGFFLPLPEK 549 (638)
Q Consensus 496 ~~~~f~l--g~~v~~~~~~~~~~~~~~~~~~~~~~~~il~~t~~GsIg~l~pl~~~ 549 (638)
...+.+- ...|+++.-.+ .....+..++.||.|-+--.-..+
T Consensus 294 ~~~~~~~~h~~~V~~v~~~p------------~~~~~laS~s~Dg~v~~W~~~~~~ 337 (345)
T 3fm0_A 294 LTAHLHQAHSQDVNCVAWNP------------KEPGLLASCSDDGEVAFWKYQRPE 337 (345)
T ss_dssp EEEEETTSSSSCEEEEEECS------------SSTTEEEEEETTSCEEEEEECC--
T ss_pred EEeeecccccCcEeEeEEeC------------CCceEEEEcCCCCcEEEEEecCCC
Confidence 2222221 24455543211 122357788999999877665443
No 81
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=95.88 E-value=2.9 Score=46.37 Aligned_cols=123 Identities=10% Similarity=0.181 Sum_probs=75.8
Q ss_pred ccEEEEeecccCCCCcccceeEEEEEEEEeecCCCCccccCceEEEEEEeeCCceEEEc-cccCeeEEEe--cCEEEEEE
Q psy92 276 RGYIALGTNYNYSEDVTCRGRILLFDIIEVVPEPGQPLTKNKIKMIYAKEQKGPVTAIC-HVAGFLVTAV--GQKIYIWQ 352 (638)
Q Consensus 276 ~~~ivVGT~~~~~ed~~~~GrI~vf~i~~vvpe~g~~~t~~kLkl~~~~~~~G~V~al~-~~~g~Ll~av--g~~l~v~~ 352 (638)
..++++|. ..|.|.+|++.. .+++.+......++|++|+ .-+|+++++. ..+|++|+
T Consensus 460 g~~lasgs---------~D~~v~lwd~~~-----------~~~~~~~~~~h~~~v~~v~fspdg~~las~s~d~~v~~w~ 519 (611)
T 1nr0_A 460 KQFVAVGG---------QDSKVHVYKLSG-----------ASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYS 519 (611)
T ss_dssp SCEEEEEE---------TTSEEEEEEEET-----------TEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred CCEEEEeC---------CCCeEEEEEccC-----------CceeeeeccCCCCceEEEEECCCCCEEEEEcCCCCEEEEE
Confidence 35777776 578999999853 2444444456788999987 3355555544 35899999
Q ss_pred eeC-CceeeeEEee-cceeEEEEee--ecCEEEEeeccCcEEEEEEeccCCeEEEEeccCC-Ccceeeeecc
Q psy92 353 LKD-NDLTGIAFID-TEVYIASMVS--VKNLILVGDYARSIALLRYQPEYRTLSLVARDYK-PTQPNSKGYY 419 (638)
Q Consensus 353 l~~-~~L~~~a~~d-~~~~i~~i~~--~~~~IlvgD~~~Sv~ll~~~~~~~~l~~~arD~~-~~~v~~~~~l 419 (638)
+.+ .++.....+. -...|.++.. .+.+|+.|..-+.|.+...+.....+..+ .... ...|+++.|.
T Consensus 520 ~~~~~~~~~~~~~~~H~~~V~~v~fspdg~~lasgs~D~~v~lW~~~~~~~~~~~~-~~~h~~~~v~~v~fs 590 (611)
T 1nr0_A 520 VANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIII-KGAHAMSSVNSVIWL 590 (611)
T ss_dssp GGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEE-TTSSTTSCEEEEEEE
T ss_pred cCCCCceeeeeeeeecccceeEEEECCCCCEEEEEECCCcEEEEECCCcccccchh-hccCcccCeeEEEEc
Confidence 986 4543321111 1234555554 46799999999999888765432222122 2223 4568888885
No 82
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=95.80 E-value=1.6 Score=42.65 Aligned_cols=97 Identities=10% Similarity=0.133 Sum_probs=61.8
Q ss_pred ccEEEEeecccCCCCcccceeEEEEEEEEeecCCCCccccCceEEEEEEeeCCceEEEccc-cCe-eEEEe-cCEEEEEE
Q psy92 276 RGYIALGTNYNYSEDVTCRGRILLFDIIEVVPEPGQPLTKNKIKMIYAKEQKGPVTAICHV-AGF-LVTAV-GQKIYIWQ 352 (638)
Q Consensus 276 ~~~ivVGT~~~~~ed~~~~GrI~vf~i~~vvpe~g~~~t~~kLkl~~~~~~~G~V~al~~~-~g~-Ll~av-g~~l~v~~ 352 (638)
..+++.|+ ..|.|.+|++.. .+.... ....+++|++++-. +|. |+++. ...+++|+
T Consensus 29 ~~~l~s~~---------~dg~v~vw~~~~-----------~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~ 87 (313)
T 3odt_A 29 DSKVASVS---------RDGTVRLWSKDD-----------QWLGTV-VYTGQGFLNSVCYDSEKELLLFGGKDTMINGVP 87 (313)
T ss_dssp TTEEEEEE---------TTSEEEEEEESS-----------SEEEEE-EEECSSCEEEEEEETTTTEEEEEETTSCEEEEE
T ss_pred CCEEEEEE---------cCCcEEEEECCC-----------CEEEEE-eecCCccEEEEEECCCCCEEEEecCCCeEEEEE
Confidence 46788887 679999999742 122222 22348899998733 344 44443 34789999
Q ss_pred eeCCc-eeeeEEe-ecceeEEEEeeecCEEEEeeccCcEEEEE
Q psy92 353 LKDND-LTGIAFI-DTEVYIASMVSVKNLILVGDYARSIALLR 393 (638)
Q Consensus 353 l~~~~-L~~~a~~-d~~~~i~~i~~~~~~IlvgD~~~Sv~ll~ 393 (638)
+.+.. ......+ .....+.++...++++++|..-..+.++.
T Consensus 88 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~d~~i~~~d 130 (313)
T 3odt_A 88 LFATSGEDPLYTLIGHQGNVCSLSFQDGVVISGSWDKTAKVWK 130 (313)
T ss_dssp TTCCTTSCC-CEECCCSSCEEEEEEETTEEEEEETTSEEEEEE
T ss_pred eeecCCCCcccchhhcccCEEEEEecCCEEEEEeCCCCEEEEc
Confidence 87432 1112222 23456777777899999999988888765
No 83
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=95.76 E-value=1.5 Score=43.73 Aligned_cols=152 Identities=12% Similarity=0.042 Sum_probs=80.0
Q ss_pred cCCeEEEEEeCCCCCCCCCceeEEEeCCC--cccEEEEecCCCEEEEEEeeecCCCcccccCCccccccCCCCCCCCCCC
Q psy92 150 AKSELRISVLPTHLSYDAPWPVRKVPLKC--TPHFLAYHLETKTYCIVTSTAEPSTDYYKFNGEDKELVTDPRDSRFIPP 227 (638)
Q Consensus 150 ~~~~L~I~~l~~~~~~~~~~~~r~ipL~~--tp~ri~y~~~~~~~~V~~s~~~~~~~~~~~~~e~~e~~~~~~~~~~~~p 227 (638)
.++.|.+..+.+ .-..++++++. .|+.++++|..+.++++...
T Consensus 19 ~~~~v~~~d~~~------~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~----------------------------- 63 (349)
T 1jmx_B 19 YPNNLHVVDVAS------DTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNH----------------------------- 63 (349)
T ss_dssp TTTEEEEEETTT------TEEEEEEECSSCCSSCEEEECTTSSEEEEEETT-----------------------------
T ss_pred CCCeEEEEECCC------CcEEEEEecCCCCCCceeEECCCCCEEEEEeCC-----------------------------
Confidence 456766655543 35677888888 79999999988765544310
Q ss_pred cccccEEEEEeCCCceeecceeecCCCc--eeEeEEEEEEeeccCccCCcccEEEEeeccc-CCCCc--ccceeEEEEEE
Q psy92 228 LVSQFHVSLFSPFSWEEIPQTNFPLHEW--EHVLCLKNVSMEYEGTLSGLRGYIALGTNYN-YSEDV--TCRGRILLFDI 302 (638)
Q Consensus 228 ~~~~~~i~lid~~t~~~i~~~~~~l~~~--E~v~si~~v~l~~~~~~~~~~~~ivVGT~~~-~~ed~--~~~GrI~vf~i 302 (638)
...|.++|..+.+.+. .+.+... +....+..+.+.. ...+++++..-. ...+. ...+.|.+|++
T Consensus 64 ---~~~i~~~d~~t~~~~~--~~~~~~~~~~~~~~~~~~~~sp------dg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~ 132 (349)
T 1jmx_B 64 ---YGDIYGIDLDTCKNTF--HANLSSVPGEVGRSMYSFAISP------DGKEVYATVNPTQRLNDHYVVKPPRLEVFST 132 (349)
T ss_dssp ---TTEEEEEETTTTEEEE--EEESCCSTTEEEECSSCEEECT------TSSEEEEEEEEEEECSSCEEECCCEEEEEEG
T ss_pred ---CCcEEEEeCCCCcEEE--EEEcccccccccccccceEECC------CCCEEEEEcccccccccccccCCCeEEEEEC
Confidence 1247777777666554 3443321 1111111223332 235666665321 11111 12478999886
Q ss_pred EEeecCCCCccccCceEEEEEEeeCCceEEEc-cccCeeEEEecCEEEEEEeeCCce
Q psy92 303 IEVVPEPGQPLTKNKIKMIYAKEQKGPVTAIC-HVAGFLVTAVGQKIYIWQLKDNDL 358 (638)
Q Consensus 303 ~~vvpe~g~~~t~~kLkl~~~~~~~G~V~al~-~~~g~Ll~avg~~l~v~~l~~~~L 358 (638)
.. ++ ..+.+........+.+++ .-+|+|++ .+..|++|+..+.++
T Consensus 133 ~~-----~~-----~~~~~~~~~~~~~~~~~~~s~dg~l~~-~~~~i~~~d~~~~~~ 178 (349)
T 1jmx_B 133 AD-----GL-----EAKPVRTFPMPRQVYLMRAADDGSLYV-AGPDIYKMDVKTGKY 178 (349)
T ss_dssp GG-----GG-----GBCCSEEEECCSSCCCEEECTTSCEEE-ESSSEEEECTTTCCE
T ss_pred CC-----cc-----ccceeeeccCCCcccceeECCCCcEEE-ccCcEEEEeCCCCce
Confidence 42 11 112222222333455554 34567555 566798898876554
No 84
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=95.73 E-value=0.67 Score=53.26 Aligned_cols=147 Identities=11% Similarity=0.151 Sum_probs=89.0
Q ss_pred ccEEEEeecccCCCCcccceeEEEEEEEEeecCCCCccccCceEEEEEEeeCCceEEEcccc--------------Ce-e
Q psy92 276 RGYIALGTNYNYSEDVTCRGRILLFDIIEVVPEPGQPLTKNKIKMIYAKEQKGPVTAICHVA--------------GF-L 340 (638)
Q Consensus 276 ~~~ivVGT~~~~~ed~~~~GrI~vf~i~~vvpe~g~~~t~~kLkl~~~~~~~G~V~al~~~~--------------g~-L 340 (638)
..++++|+ ..|.|.+|++.. + ............++|++++-.. |. |
T Consensus 113 ~~~l~sgs---------~dg~I~vwdl~~-----~-----~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l 173 (753)
T 3jro_A 113 GPLLLVAS---------SDGKVSVVEFKE-----N-----GTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKF 173 (753)
T ss_dssp CSEEEEEE---------TTSEEEEEECCS-----S-----SCCCCEEEECCSSCEEEEEECCCC---------CGGGCCE
T ss_pred CCEEEEEe---------CCCcEEEEEeec-----C-----CCcceeEeecCCCceEEEEecCcccccccccccCCCCCEE
Confidence 47888887 689999999754 1 1112222345678899886432 44 4
Q ss_pred EEEe-cCEEEEEEeeCCc--eeeeEEee-cceeEEEEeee-----cCEEEEeeccCcEEEEEEeccCCe--EEEEeccCC
Q psy92 341 VTAV-GQKIYIWQLKDND--LTGIAFID-TEVYIASMVSV-----KNLILVGDYARSIALLRYQPEYRT--LSLVARDYK 409 (638)
Q Consensus 341 l~av-g~~l~v~~l~~~~--L~~~a~~d-~~~~i~~i~~~-----~~~IlvgD~~~Sv~ll~~~~~~~~--l~~~arD~~ 409 (638)
++|. ..+|++|++.... ......+. ....|+++... +++++.|+.-..|.++........ .........
T Consensus 174 ~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~ 253 (753)
T 3jro_A 174 VTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKF 253 (753)
T ss_dssp EEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCC
T ss_pred EEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCC
Confidence 4443 4589999998543 12222222 23456666654 668899998888888877543221 111222223
Q ss_pred CcceeeeecccCCCCCcccccccceeeeeeccccccccccccCCcccccccCCCceeEEEEeCCCcEEEEEeCC
Q psy92 410 PTQPNSKGYYAGNPSRGIIDGSLVWKFLQLSLGERLEICKKIGSKHNDILDEFSSMGFMISDKDKNVVLFMYQP 483 (638)
Q Consensus 410 ~~~v~~~~~l~~~~~~~~vd~~~~~~~~~~~~gd~~~~~~r~~~~~~~~~~~~~~l~~l~aD~~~nl~v~~~~~ 483 (638)
...++++.|- .| +. .++++..+|.++++..+.
T Consensus 254 ~~~v~~l~~s--------pd--------------------------------g~--~l~s~s~Dg~I~vwd~~~ 285 (753)
T 3jro_A 254 PDVLWRASWS--------LS--------------------------------GN--VLALSGGDNKVTLWKENL 285 (753)
T ss_dssp SSCCCCEEEC--------TT--------------------------------TC--CEEEECSSSCEECCBCCS
T ss_pred CCceEEEEEc--------CC--------------------------------CC--EEEEEcCCCEEEEEecCC
Confidence 4456666563 23 32 367778899999998875
No 85
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=95.71 E-value=2.9 Score=45.15 Aligned_cols=174 Identities=13% Similarity=0.113 Sum_probs=97.9
Q ss_pred ccEEEEeecccCCCCcccceeEEEEEEEEeecCCCCccccCceEEEEEEeeCCceEEEcc-ccCe-eEEEe-cCEEEEEE
Q psy92 276 RGYIALGTNYNYSEDVTCRGRILLFDIIEVVPEPGQPLTKNKIKMIYAKEQKGPVTAICH-VAGF-LVTAV-GQKIYIWQ 352 (638)
Q Consensus 276 ~~~ivVGT~~~~~ed~~~~GrI~vf~i~~vvpe~g~~~t~~kLkl~~~~~~~G~V~al~~-~~g~-Ll~av-g~~l~v~~ 352 (638)
..+|+.|. ..|.|.+|+.. + ..++. .....++|++++- -++. |+++. ..+|++|+
T Consensus 397 g~~l~~~~---------~d~~v~~~~~~------~-----~~~~~--~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~ 454 (577)
T 2ymu_A 397 GQTIASAS---------DDKTVKLWNRN------G-----QLLQT--LTGHSSSVWGVAFSPDDQTIASASDDKTVKLWN 454 (577)
T ss_dssp SSCEEEEE---------TTSEEEEECTT------C-----CEEEE--EECCSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred CCEEEEEe---------CCCEEEEEeCC------C-----CEEEE--ecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEE
Confidence 46788776 56789888621 1 12221 1345788988863 2344 44443 35899999
Q ss_pred eeCCceeeeEEeecceeEEEEee--ecCEEEEeeccCcEEEEEEeccCCeEEEEeccCCCcceeeeecccCCCCCccccc
Q psy92 353 LKDNDLTGIAFIDTEVYIASMVS--VKNLILVGDYARSIALLRYQPEYRTLSLVARDYKPTQPNSKGYYAGNPSRGIIDG 430 (638)
Q Consensus 353 l~~~~L~~~a~~d~~~~i~~i~~--~~~~IlvgD~~~Sv~ll~~~~~~~~l~~~arD~~~~~v~~~~~l~~~~~~~~vd~ 430 (638)
...+.+.... .....+.++.. .+.+++.|..-..|.+.. .....+..+.. ....++++.|- .|
T Consensus 455 ~~~~~~~~~~--~~~~~v~~~~~spd~~~las~~~d~~i~iw~--~~~~~~~~~~~--h~~~v~~l~~s--------~d- 519 (577)
T 2ymu_A 455 RNGQLLQTLT--GHSSSVRGVAFSPDGQTIASASDDKTVKLWN--RNGQLLQTLTG--HSSSVRGVAFS--------PD- 519 (577)
T ss_dssp TTSCEEEEEE--CCSSCEEEEEECTTSCEEEEEETTSEEEEEE--TTSCEEEEEEC--CSSCEEEEEEC--------TT-
T ss_pred CCCCEEEEEc--CCCCCEEEEEEcCCCCEEEEEeCCCEEEEEc--CCCCEEEEEeC--CCCCEEEEEEc--------CC-
Confidence 7644333222 12234455443 467888888777777654 44343333322 23457787775 34
Q ss_pred ccceeeeeeccccccccccccCCcccccccCCCceeEEEEeCCCcEEEEEeCCCCcCCCCCceEEEEeeeecCcceeeEE
Q psy92 431 SLVWKFLQLSLGERLEICKKIGSKHNDILDEFSSMGFMISDKDKNVVLFMYQPEARESNGGHRLIKKTDFHLGQHVNTFF 510 (638)
Q Consensus 431 ~~~~~~~~~~~gd~~~~~~r~~~~~~~~~~~~~~l~~l~aD~~~nl~v~~~~~~~~~s~~~~~L~~~~~f~lg~~v~~~~ 510 (638)
+. .++.++.++.+.++.++ ++.+.. ..-| .+.|+++.
T Consensus 520 -------------------------------g~--~l~s~~~dg~v~lwd~~--------~~~~~~-~~~h-~~~v~~~~ 556 (577)
T 2ymu_A 520 -------------------------------GQ--TIASASDDKTVKLWNRN--------GQLLQT-LTGH-SSSVWGVA 556 (577)
T ss_dssp -------------------------------SS--CEEEEETTSEEEEECTT--------SCEEEE-EECC-SSCEEEEE
T ss_pred -------------------------------CC--EEEEEECcCEEEEEeCC--------CCEEEE-EcCC-CCCEEEEE
Confidence 33 36788899999998642 223322 1223 34566553
Q ss_pred EEeccCCCCCCCCCCCCceEEEEEeCCCcEEE
Q psy92 511 KIRCKPSSISDAPGARSRFLTWYASLDGALGF 542 (638)
Q Consensus 511 ~~~~~~~~~~~~~~~~~~~~il~~t~~GsIg~ 542 (638)
-. ..+ ..++.++.||+|-+
T Consensus 557 fs------------~dg-~~l~s~~~D~~i~~ 575 (577)
T 2ymu_A 557 FS------------PDG-QTIASASSDKTVKL 575 (577)
T ss_dssp EC------------TTS-SCEEEEETTSCEEE
T ss_pred Ec------------CCC-CEEEEEeCCCEEEE
Confidence 21 112 34677888998753
No 86
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=95.64 E-value=1.6 Score=44.25 Aligned_cols=131 Identities=9% Similarity=0.111 Sum_probs=74.1
Q ss_pred EEEEEeCCCceeecceeecCCCceeEeEEEEEEeeccCccCCcccEEEEeecccCCCCcccceeEEEEEEEEeecCCCCc
Q psy92 233 HVSLFSPFSWEEIPQTNFPLHEWEHVLCLKNVSMEYEGTLSGLRGYIALGTNYNYSEDVTCRGRILLFDIIEVVPEPGQP 312 (638)
Q Consensus 233 ~i~lid~~t~~~i~~~~~~l~~~E~v~si~~v~l~~~~~~~~~~~~ivVGT~~~~~ed~~~~GrI~vf~i~~vvpe~g~~ 312 (638)
.+.+++..+.+.+. .+.....+.+.++. +.... ...+++.|+ ..|.|.+|++..
T Consensus 105 ~~~~~~~~~~~~~~--~~~~~~~~~v~~~~---~~~~~----~~~~l~s~s---------~dg~i~~wd~~~-------- 158 (343)
T 3lrv_A 105 QITILDSKTNKVLR--EIEVDSANEIIYMY---GHNEV----NTEYFIWAD---------NRGTIGFQSYED-------- 158 (343)
T ss_dssp EEEEEETTTCCEEE--EEECCCSSCEEEEE---CCC-------CCEEEEEE---------TTCCEEEEESSS--------
T ss_pred ceEEeecCCcceeE--EeecCCCCCEEEEE---cCCCC----CCCEEEEEe---------CCCcEEEEECCC--------
Confidence 34555555555443 34444444565553 32100 246888787 678999999743
Q ss_pred cccCceEEEEEEeeCCceEEEcc-ccCeeEEE--ecCEEEEEEeeCCceeeeEEee-cceeEEEEeee--cCEEEEeecc
Q psy92 313 LTKNKIKMIYAKEQKGPVTAICH-VAGFLVTA--VGQKIYIWQLKDNDLTGIAFID-TEVYIASMVSV--KNLILVGDYA 386 (638)
Q Consensus 313 ~t~~kLkl~~~~~~~G~V~al~~-~~g~Ll~a--vg~~l~v~~l~~~~L~~~a~~d-~~~~i~~i~~~--~~~IlvgD~~ 386 (638)
.+...+......++|++++- -+|.++++ ....|++|++...+.....+-. -...|+++... +.+++.|. -
T Consensus 159 ---~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~ 234 (343)
T 3lrv_A 159 ---DSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC-D 234 (343)
T ss_dssp ---SCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE-S
T ss_pred ---CcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe-C
Confidence 23333333345567888863 34555554 4468999999976644222222 24567776654 56888887 3
Q ss_pred CcEEEEE
Q psy92 387 RSIALLR 393 (638)
Q Consensus 387 ~Sv~ll~ 393 (638)
..|.+..
T Consensus 235 ~~v~iwd 241 (343)
T 3lrv_A 235 QTVVCFD 241 (343)
T ss_dssp SBEEEEE
T ss_pred CeEEEEE
Confidence 3554443
No 87
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=95.49 E-value=2.6 Score=43.08 Aligned_cols=153 Identities=14% Similarity=0.166 Sum_probs=83.6
Q ss_pred cEEEEEeCCCceeecceeecCCCceeEeEEEEEEeeccCccCCcccEEEEeecccCCCCcccceeEEEEEEEEeecCCCC
Q psy92 232 FHVSLFSPFSWEEIPQTNFPLHEWEHVLCLKNVSMEYEGTLSGLRGYIALGTNYNYSEDVTCRGRILLFDIIEVVPEPGQ 311 (638)
Q Consensus 232 ~~i~lid~~t~~~i~~~~~~l~~~E~v~si~~v~l~~~~~~~~~~~~ivVGT~~~~~ed~~~~GrI~vf~i~~vvpe~g~ 311 (638)
..+++.|..+.+.+. .+.-.. ..+.|+. +.... ...+++.|. ..|.|.+|++.. +
T Consensus 176 ~~v~lwd~~~~~~~~--~~~~h~-~~v~~~~---~~~~~----~g~~l~sgs---------~Dg~v~~wd~~~-----~- 230 (354)
T 2pbi_B 176 GTCALWDVESGQLLQ--SFHGHG-ADVLCLD---LAPSE----TGNTFVSGG---------CDKKAMVWDMRS-----G- 230 (354)
T ss_dssp SEEEEEETTTCCEEE--EEECCS-SCEEEEE---ECCCS----SCCEEEEEE---------TTSCEEEEETTT-----C-
T ss_pred CcEEEEeCCCCeEEE--EEcCCC-CCeEEEE---EEeCC----CCCEEEEEe---------CCCeEEEEECCC-----C-
Confidence 457788777666543 333222 2344443 32211 236888887 678999998642 1
Q ss_pred ccccCceEEEEE-EeeCCceEEEccc-cCeeEEEe--cCEEEEEEeeCCceeeeEEe-ecceeEEEEee--ecCEEEEee
Q psy92 312 PLTKNKIKMIYA-KEQKGPVTAICHV-AGFLVTAV--GQKIYIWQLKDNDLTGIAFI-DTEVYIASMVS--VKNLILVGD 384 (638)
Q Consensus 312 ~~t~~kLkl~~~-~~~~G~V~al~~~-~g~Ll~av--g~~l~v~~l~~~~L~~~a~~-d~~~~i~~i~~--~~~~IlvgD 384 (638)
+. +.. ....++|++++-. +|.++++. ..+|++|++...+....-.. .....++++.. .+.++++|.
T Consensus 231 -----~~--~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~ 303 (354)
T 2pbi_B 231 -----QC--VQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGY 303 (354)
T ss_dssp -----CE--EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEE
T ss_pred -----cE--EEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEE
Confidence 21 121 2346789988743 34444443 45899999985542211111 11123444443 478999998
Q ss_pred ccCcEEEEEEeccCCeEEEEeccCCCcceeeeecc
Q psy92 385 YARSIALLRYQPEYRTLSLVARDYKPTQPNSKGYY 419 (638)
Q Consensus 385 ~~~Sv~ll~~~~~~~~l~~~arD~~~~~v~~~~~l 419 (638)
.-..|.++.... ...+..+. ....+++++.|-
T Consensus 304 ~d~~i~vwd~~~-~~~~~~l~--~h~~~v~~l~~s 335 (354)
T 2pbi_B 304 NDYTINVWDVLK-GSRVSILF--GHENRVSTLRVS 335 (354)
T ss_dssp TTSCEEEEETTT-CSEEEEEC--CCSSCEEEEEEC
T ss_pred CCCcEEEEECCC-CceEEEEE--CCCCcEEEEEEC
Confidence 888888765432 22333332 234467777774
No 88
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=95.46 E-value=0.079 Score=56.32 Aligned_cols=121 Identities=18% Similarity=0.225 Sum_probs=72.4
Q ss_pred ccEEEEeecccCCCCcccceeEEEEEEEEeecCCCCccccCceEEEEEEeeCCceEEEcc--ccCeeEEEec--CEEEEE
Q psy92 276 RGYIALGTNYNYSEDVTCRGRILLFDIIEVVPEPGQPLTKNKIKMIYAKEQKGPVTAICH--VAGFLVTAVG--QKIYIW 351 (638)
Q Consensus 276 ~~~ivVGT~~~~~ed~~~~GrI~vf~i~~vvpe~g~~~t~~kLkl~~~~~~~G~V~al~~--~~g~Ll~avg--~~l~v~ 351 (638)
..+||+|. ..|.|.+|++.. ..+...+......++|++|+- .++.+|++.+ .+|++|
T Consensus 132 ~~~lasGs---------~dg~i~lWd~~~----------~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iw 192 (435)
T 4e54_B 132 PSTVAVGS---------KGGDIMLWNFGI----------KDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQ 192 (435)
T ss_dssp TTCEEEEE---------TTSCEEEECSSC----------CSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEE
T ss_pred CCEEEEEe---------CCCEEEEEECCC----------CCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEe
Confidence 46899998 789999998742 112222222345789999973 4565555443 589999
Q ss_pred EeeCCceeeeEEee-cceeEEEEee--ecCEEEEeeccCcEEEEEEeccCCeEEEEeccCCCcceeeeecc
Q psy92 352 QLKDNDLTGIAFID-TEVYIASMVS--VKNLILVGDYARSIALLRYQPEYRTLSLVARDYKPTQPNSKGYY 419 (638)
Q Consensus 352 ~l~~~~L~~~a~~d-~~~~i~~i~~--~~~~IlvgD~~~Sv~ll~~~~~~~~l~~~arD~~~~~v~~~~~l 419 (638)
+++.+.+......+ ....+.++.. .+++|++|+.-..|.++..+ ...+..+ .....+|+++.|-
T Consensus 193 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~--~~~~~~~--~~h~~~v~~v~~~ 259 (435)
T 4e54_B 193 DFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMD--GKELWNL--RMHKKKVTHVALN 259 (435)
T ss_dssp ETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESS--SCBCCCS--BCCSSCEEEEEEC
T ss_pred eccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccC--cceeEEE--ecccceEEeeeec
Confidence 99866554433222 2333444443 46799999988888876542 2222111 1223457777663
No 89
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=95.43 E-value=1.2 Score=52.57 Aligned_cols=95 Identities=16% Similarity=0.316 Sum_probs=62.5
Q ss_pred ccEEEEeecccCCCCcccceeEEEEEEEEeecCCCCccccCceEEEEEEeeCCceEEEccccCe-eEEE-ecCEEEEEEe
Q psy92 276 RGYIALGTNYNYSEDVTCRGRILLFDIIEVVPEPGQPLTKNKIKMIYAKEQKGPVTAICHVAGF-LVTA-VGQKIYIWQL 353 (638)
Q Consensus 276 ~~~ivVGT~~~~~ed~~~~GrI~vf~i~~vvpe~g~~~t~~kLkl~~~~~~~G~V~al~~~~g~-Ll~a-vg~~l~v~~l 353 (638)
..+||+|+ ..|.|++|+.. ..+.+.....+++|++|+-..|. |+.+ ...+|++|++
T Consensus 29 g~~lAsgs---------~Dg~I~lw~~~-------------~~~~~~~~~~~~~V~~l~fspg~~L~S~s~D~~v~lWd~ 86 (902)
T 2oaj_A 29 QNLLAIAT---------VTGEVHIYGQQ-------------QVEVVIKLEDRSAIKEMRFVKGIYLVVINAKDTVYVLSL 86 (902)
T ss_dssp TTEEEEEE---------TTSEEEEECST-------------TCEEEEECSSCCCEEEEEEETTTEEEEEETTCEEEEEET
T ss_pred CCEEEEEe---------CCCEEEEEeCC-------------CcEEEEEcCCCCCEEEEEEcCCCEEEEEECcCeEEEEEC
Confidence 47999998 67899999642 12223333357899999743366 4444 3458999999
Q ss_pred eCCceeeeEEeecceeEEEEee--ecCEEEEeeccCcEEEEEE
Q psy92 354 KDNDLTGIAFIDTEVYIASMVS--VKNLILVGDYARSIALLRY 394 (638)
Q Consensus 354 ~~~~L~~~a~~d~~~~i~~i~~--~~~~IlvgD~~~Sv~ll~~ 394 (638)
..+++... +..+..|+++.. .++++++|+.-..|.++..
T Consensus 87 ~~~~~~~~--~~~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~ 127 (902)
T 2oaj_A 87 YSQKVLTT--VFVPGKITSIDTDASLDWMLIGLQNGSMIVYDI 127 (902)
T ss_dssp TTCSEEEE--EECSSCEEEEECCTTCSEEEEEETTSCEEEEET
T ss_pred CCCcEEEE--EcCCCCEEEEEECCCCCEEEEEcCCCcEEEEEC
Confidence 87664422 223344555554 4789999999888877543
No 90
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=95.39 E-value=4.6 Score=45.34 Aligned_cols=93 Identities=12% Similarity=0.238 Sum_probs=53.4
Q ss_pred ccEEEEeecccCCCCcccceeEEEEEEEEeecCCCCccccCceEEEEEEeeCCceEEEcc-ccCeeEEEec--CEEEEEE
Q psy92 276 RGYIALGTNYNYSEDVTCRGRILLFDIIEVVPEPGQPLTKNKIKMIYAKEQKGPVTAICH-VAGFLVTAVG--QKIYIWQ 352 (638)
Q Consensus 276 ~~~ivVGT~~~~~ed~~~~GrI~vf~i~~vvpe~g~~~t~~kLkl~~~~~~~G~V~al~~-~~g~Ll~avg--~~l~v~~ 352 (638)
..+++.|. ..|.|.+|++.. .++... -....++|++++- -+|.++++.+ .+|++|+
T Consensus 531 ~~~l~s~s---------~d~~v~vwd~~~-----------~~~~~~-~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd 589 (694)
T 3dm0_A 531 QPTIVSAS---------WDKTVKVWNLSN-----------CKLRST-LAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWD 589 (694)
T ss_dssp SCEEEEEE---------TTSCEEEEETTT-----------CCEEEE-ECCCSSCEEEEEECTTSSEEEEEETTSBCEEEE
T ss_pred cceEEEEe---------CCCeEEEEECCC-----------CcEEEE-EcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEE
Confidence 46777776 678999998642 222211 1235789999873 3455555443 4899999
Q ss_pred eeCCceeeeEEeecceeEEEEeee--cCEEEEeeccCcEEEE
Q psy92 353 LKDNDLTGIAFIDTEVYIASMVSV--KNLILVGDYARSIALL 392 (638)
Q Consensus 353 l~~~~L~~~a~~d~~~~i~~i~~~--~~~IlvgD~~~Sv~ll 392 (638)
+...+... .+.....+.++... +.++++| .-.+|.+.
T Consensus 590 ~~~~~~~~--~~~~~~~v~~~~~sp~~~~l~~~-~~~~i~iw 628 (694)
T 3dm0_A 590 LAEGKKLY--SLEANSVIHALCFSPNRYWLCAA-TEHGIKIW 628 (694)
T ss_dssp TTTTEEEE--CCBCSSCEEEEEECSSSSEEEEE-ETTEEEEE
T ss_pred CCCCceEE--EecCCCcEEEEEEcCCCcEEEEE-cCCCEEEE
Confidence 98665321 23344456655543 3344444 34555554
No 91
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=95.36 E-value=2.4 Score=43.05 Aligned_cols=161 Identities=11% Similarity=0.139 Sum_probs=87.8
Q ss_pred ceeEEEeCCCcccEEEEecCCCEEEEEEeeecCCCcccccCCccccccCCCCCCCCCCCcccccEEEEEeCCCceeecce
Q psy92 169 WPVRKVPLKCTPHFLAYHLETKTYCIVTSTAEPSTDYYKFNGEDKELVTDPRDSRFIPPLVSQFHVSLFSPFSWEEIPQT 248 (638)
Q Consensus 169 ~~~r~ipL~~tp~ri~y~~~~~~~~V~~s~~~~~~~~~~~~~e~~e~~~~~~~~~~~~p~~~~~~i~lid~~t~~~i~~~ 248 (638)
-.+++|+....|+.|++++..+.|+ +.. ....|.++|+.+.+.+.
T Consensus 75 ~~~~~i~~~~~p~~i~~~~~g~lyv-~~~--------------------------------~~~~v~~iD~~t~~~~~-- 119 (328)
T 3dsm_A 75 KEVGRITGFTSPRYIHFLSDEKAYV-TQI--------------------------------WDYRIFIINPKTYEITG-- 119 (328)
T ss_dssp CEEEEEECCSSEEEEEEEETTEEEE-EEB--------------------------------SCSEEEEEETTTTEEEE--
T ss_pred EEEEEcCCCCCCcEEEEeCCCeEEE-EEC--------------------------------CCCeEEEEECCCCeEEE--
Confidence 4567788888999999987765443 221 01357788888887664
Q ss_pred eecCCCce----eEeEEEEEEeeccCccCCcccEEEEeecccCCCCcccceeEEEEEEEEeecCCCCccccCceEEEEEE
Q psy92 249 NFPLHEWE----HVLCLKNVSMEYEGTLSGLRGYIALGTNYNYSEDVTCRGRILLFDIIEVVPEPGQPLTKNKIKMIYAK 324 (638)
Q Consensus 249 ~~~l~~~E----~v~si~~v~l~~~~~~~~~~~~ivVGT~~~~~ed~~~~GrI~vf~i~~vvpe~g~~~t~~kLkl~~~~ 324 (638)
.++..... .+..+.. . ...+.|+.. ...++|.+|+... .+ ++...
T Consensus 120 ~i~~g~~~~~~~~p~~i~~---~--------~~~lyv~~~-------~~~~~v~viD~~t-----------~~--~~~~i 168 (328)
T 3dsm_A 120 YIECPDMDMESGSTEQMVQ---Y--------GKYVYVNCW-------SYQNRILKIDTET-----------DK--VVDEL 168 (328)
T ss_dssp EEECTTCCTTTCBCCCEEE---E--------TTEEEEEEC-------TTCCEEEEEETTT-----------TE--EEEEE
T ss_pred EEEcCCccccCCCcceEEE---E--------CCEEEEEcC-------CCCCEEEEEECCC-----------Ce--EEEEE
Confidence 44443311 2333332 1 122333320 0256788876421 12 22222
Q ss_pred eeCCceEEEc-cccCeeEEEe-c-----------CEEEEEEeeCCceeeeEEeec--ceeEEEEeee--cCEEEEeeccC
Q psy92 325 EQKGPVTAIC-HVAGFLVTAV-G-----------QKIYIWQLKDNDLTGIAFIDT--EVYIASMVSV--KNLILVGDYAR 387 (638)
Q Consensus 325 ~~~G~V~al~-~~~g~Ll~av-g-----------~~l~v~~l~~~~L~~~a~~d~--~~~i~~i~~~--~~~IlvgD~~~ 387 (638)
.....+..+. .-+|+++++. | .+|++++....++.. .+.+ ...+..+... ++++++.+.
T Consensus 169 ~~g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~--~~~~~~g~~p~~la~~~d~~~lyv~~~-- 244 (328)
T 3dsm_A 169 TIGIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEK--QFKFKLGDWPSEVQLNGTRDTLYWINN-- 244 (328)
T ss_dssp ECSSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEE--EEECCTTCCCEEEEECTTSCEEEEESS--
T ss_pred EcCCCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEE--EEecCCCCCceeEEEecCCCEEEEEcc--
Confidence 3333344443 3357776664 3 468888877666543 2333 2245555554 789999886
Q ss_pred cEEEEEEeccCCeE
Q psy92 388 SIALLRYQPEYRTL 401 (638)
Q Consensus 388 Sv~ll~~~~~~~~l 401 (638)
.++.|+.+..++
T Consensus 245 --~v~~~d~~t~~~ 256 (328)
T 3dsm_A 245 --DIWRMPVEADRV 256 (328)
T ss_dssp --SEEEEETTCSSC
T ss_pred --EEEEEECCCCce
Confidence 455676655544
No 92
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=95.34 E-value=2.7 Score=42.37 Aligned_cols=210 Identities=14% Similarity=0.124 Sum_probs=115.9
Q ss_pred cEEEEEeCCCceeecceeecCCCceeEeEEEEEEeeccCccCCcccEEEEeecccCCCCcccceeEEEEEEEEeecCCCC
Q psy92 232 FHVSLFSPFSWEEIPQTNFPLHEWEHVLCLKNVSMEYEGTLSGLRGYIALGTNYNYSEDVTCRGRILLFDIIEVVPEPGQ 311 (638)
Q Consensus 232 ~~i~lid~~t~~~i~~~~~~l~~~E~v~si~~v~l~~~~~~~~~~~~ivVGT~~~~~ed~~~~GrI~vf~i~~vvpe~g~ 311 (638)
..|++.|..+.+.+. .+...+. .+.+ +.+.. ...+++.|+ ..|.|.+|++.. +
T Consensus 102 ~~i~lWd~~~~~~~~--~~~~~~~-~~~~---~~~sp------dg~~l~~g~---------~dg~v~i~~~~~-----~- 154 (321)
T 3ow8_A 102 AHIRLWDLENGKQIK--SIDAGPV-DAWT---LAFSP------DSQYLATGT---------HVGKVNIFGVES-----G- 154 (321)
T ss_dssp SEEEEEETTTTEEEE--EEECCTT-CCCC---EEECT------TSSEEEEEC---------TTSEEEEEETTT-----C-
T ss_pred CcEEEEECCCCCEEE--EEeCCCc-cEEE---EEECC------CCCEEEEEc---------CCCcEEEEEcCC-----C-
Confidence 357777766665543 3333322 2223 23332 247888887 678999998632 1
Q ss_pred ccccCceEEEEEEeeCCceEEEcc-ccCeeEE-E-ecCEEEEEEeeCCceeeeEEee-cceeEEEEee--ecCEEEEeec
Q psy92 312 PLTKNKIKMIYAKEQKGPVTAICH-VAGFLVT-A-VGQKIYIWQLKDNDLTGIAFID-TEVYIASMVS--VKNLILVGDY 385 (638)
Q Consensus 312 ~~t~~kLkl~~~~~~~G~V~al~~-~~g~Ll~-a-vg~~l~v~~l~~~~L~~~a~~d-~~~~i~~i~~--~~~~IlvgD~ 385 (638)
.+.. ........|++++- -+|++++ + ....|++|++...++... +. ....+.++.. .+.+++.|..
T Consensus 155 ----~~~~--~~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~--~~~h~~~v~~l~~spd~~~l~s~s~ 226 (321)
T 3ow8_A 155 ----KKEY--SLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHT--LEGHAMPIRSLTFSPDSQLLVTASD 226 (321)
T ss_dssp ----SEEE--EEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEE--ECCCSSCCCEEEECTTSCEEEEECT
T ss_pred ----ceeE--EecCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEE--EcccCCceeEEEEcCCCCEEEEEcC
Confidence 1111 11233567777763 3454444 3 345899999987664322 22 1223444444 4678999988
Q ss_pred cCcEEEEEEeccCCeEEEEeccCCCcceeeeecccCCCCCcccccccceeeeeeccccccccccccCCcccccccCCCce
Q psy92 386 ARSIALLRYQPEYRTLSLVARDYKPTQPNSKGYYAGNPSRGIIDGSLVWKFLQLSLGERLEICKKIGSKHNDILDEFSSM 465 (638)
Q Consensus 386 ~~Sv~ll~~~~~~~~l~~~arD~~~~~v~~~~~l~~~~~~~~vd~~~~~~~~~~~~gd~~~~~~r~~~~~~~~~~~~~~l 465 (638)
-..|.+...+.. ..+..+. ....+++++.|- .| +.
T Consensus 227 dg~i~iwd~~~~-~~~~~~~--~h~~~v~~~~~s--------p~--------------------------------~~-- 261 (321)
T 3ow8_A 227 DGYIKIYDVQHA-NLAGTLS--GHASWVLNVAFC--------PD--------------------------------DT-- 261 (321)
T ss_dssp TSCEEEEETTTC-CEEEEEC--CCSSCEEEEEEC--------TT--------------------------------SS--
T ss_pred CCeEEEEECCCc-ceeEEEc--CCCCceEEEEEC--------CC--------------------------------CC--
Confidence 888887654322 2222221 234457777774 33 33
Q ss_pred eEEEEeCCCcEEEEEeCCCCcCCCCCceEEEEeeeecCcceeeEEEEeccCCCCCCCCCCCCceEEEEEeCCCcEEEE
Q psy92 466 GFMISDKDKNVVLFMYQPEARESNGGHRLIKKTDFHLGQHVNTFFKIRCKPSSISDAPGARSRFLTWYASLDGALGFF 543 (638)
Q Consensus 466 ~~l~aD~~~nl~v~~~~~~~~~s~~~~~L~~~~~f~lg~~v~~~~~~~~~~~~~~~~~~~~~~~~il~~t~~GsIg~l 543 (638)
.++.+..++.+.++.... + +...... ...+.|+.+.-. . ....++.++.+|.|-+.
T Consensus 262 ~l~s~s~D~~v~iwd~~~-------~-~~~~~~~-~h~~~v~~v~~s------------~-~g~~l~s~~~d~~i~vw 317 (321)
T 3ow8_A 262 HFVSSSSDKSVKVWDVGT-------R-TCVHTFF-DHQDQVWGVKYN------------G-NGSKIVSVGDDQEIHIY 317 (321)
T ss_dssp EEEEEETTSCEEEEETTT-------T-EEEEEEC-CCSSCEEEEEEC------------T-TSSEEEEEETTCCEEEE
T ss_pred EEEEEeCCCcEEEEeCCC-------C-EEEEEEc-CCCCcEEEEEEC------------C-CCCEEEEEeCCCeEEEE
Confidence 477888899999997643 1 2222111 123445544221 1 22458888999998764
No 93
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=95.31 E-value=3.2 Score=43.01 Aligned_cols=191 Identities=10% Similarity=0.088 Sum_probs=98.8
Q ss_pred EEEEEcCCeEEEEEeCCCCCCCCCceeEEEeCCCcccEEEEecCCCEEEEEEeeecCCCcccccCCccccccCCCCCCCC
Q psy92 145 FLYFNAKSELRISVLPTHLSYDAPWPVRKVPLKCTPHFLAYHLETKTYCIVTSTAEPSTDYYKFNGEDKELVTDPRDSRF 224 (638)
Q Consensus 145 fl~~~~~~~L~I~~l~~~~~~~~~~~~r~ipL~~tp~ri~y~~~~~~~~V~~s~~~~~~~~~~~~~e~~e~~~~~~~~~~ 224 (638)
++....++.++|-.+.+ .-....+.....+..++++|....+++.++..
T Consensus 180 l~s~s~d~~v~iwd~~~------~~~~~~~~~~~~v~~~~~~~~~~~~l~~~s~d------------------------- 228 (393)
T 1erj_A 180 LVSGSGDRTVRIWDLRT------GQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLD------------------------- 228 (393)
T ss_dssp EEEEETTSEEEEEETTT------TEEEEEEECSSCEEEEEECSTTCCEEEEEETT-------------------------
T ss_pred EEEecCCCcEEEEECCC------CeeEEEEEcCCCcEEEEEECCCCCEEEEEcCC-------------------------
Confidence 34434578888877654 23455666677788888888444444443211
Q ss_pred CCCcccccEEEEEeCCCceeecceeecC------CCceeEeEEEEEEeeccCccCCcccEEEEeecccCCCCcccceeEE
Q psy92 225 IPPLVSQFHVSLFSPFSWEEIPQTNFPL------HEWEHVLCLKNVSMEYEGTLSGLRGYIALGTNYNYSEDVTCRGRIL 298 (638)
Q Consensus 225 ~~p~~~~~~i~lid~~t~~~i~~~~~~l------~~~E~v~si~~v~l~~~~~~~~~~~~ivVGT~~~~~ed~~~~GrI~ 298 (638)
..+++.|..+.+.+. .+.. .....+.+ +.|.. ...+|+.|. ..|.|.
T Consensus 229 -------~~v~iwd~~~~~~~~--~~~~~~~~~~~h~~~v~~---v~~~~------~g~~l~s~s---------~d~~v~ 281 (393)
T 1erj_A 229 -------RAVRVWDSETGFLVE--RLDSENESGTGHKDSVYS---VVFTR------DGQSVVSGS---------LDRSVK 281 (393)
T ss_dssp -------SCEEEEETTTCCEEE--EEC------CCCSSCEEE---EEECT------TSSEEEEEE---------TTSEEE
T ss_pred -------CcEEEEECCCCcEEE--eecccccCCCCCCCCEEE---EEECC------CCCEEEEEe---------CCCEEE
Confidence 235555554443332 1211 11123444 34432 246788887 678999
Q ss_pred EEEEEEeecCCCCcc-ccCceEEEEEEeeCCceEEEccc-cCe-eEEEe-cCEEEEEEeeCCceeeeEEeec-ceeEEEE
Q psy92 299 LFDIIEVVPEPGQPL-TKNKIKMIYAKEQKGPVTAICHV-AGF-LVTAV-GQKIYIWQLKDNDLTGIAFIDT-EVYIASM 373 (638)
Q Consensus 299 vf~i~~vvpe~g~~~-t~~kLkl~~~~~~~G~V~al~~~-~g~-Ll~av-g~~l~v~~l~~~~L~~~a~~d~-~~~i~~i 373 (638)
+|++........... ...... ..-....+.|++++-. +|. |+.+. ...|++|++...+... .+.. ...|.++
T Consensus 282 ~wd~~~~~~~~~~~~~~~~~~~-~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~--~l~~h~~~v~~v 358 (393)
T 1erj_A 282 LWNLQNANNKSDSKTPNSGTCE-VTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLL--MLQGHRNSVISV 358 (393)
T ss_dssp EEEC---------------CEE-EEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEE--EEECCSSCEEEE
T ss_pred EEECCCCCCcccccCCCCCcce-EEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEE--EECCCCCCEEEE
Confidence 999864210000000 001111 1122356788888643 344 44443 3589999998665332 1221 2335555
Q ss_pred eee--------cCEEEEeeccCcEEEEEEec
Q psy92 374 VSV--------KNLILVGDYARSIALLRYQP 396 (638)
Q Consensus 374 ~~~--------~~~IlvgD~~~Sv~ll~~~~ 396 (638)
... +++++.|..-..|.+..++.
T Consensus 359 ~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~ 389 (393)
T 1erj_A 359 AVANGSSLGPEYNVFATGSGDCKARIWKYKK 389 (393)
T ss_dssp EECSSCTTCTTCEEEEEEETTSEEEEEEEEE
T ss_pred EecCCcCcCCCCCEEEEECCCCcEEECcccc
Confidence 433 46778887777888877653
No 94
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=95.31 E-value=3 Score=42.67 Aligned_cols=169 Identities=14% Similarity=0.131 Sum_probs=94.4
Q ss_pred EEEEEeCCCceeecceeecCCCceeEeEEEEEEeeccCccCCcccEEEEeecccCCCCcccceeEEEEEEEEeecCCCCc
Q psy92 233 HVSLFSPFSWEEIPQTNFPLHEWEHVLCLKNVSMEYEGTLSGLRGYIALGTNYNYSEDVTCRGRILLFDIIEVVPEPGQP 312 (638)
Q Consensus 233 ~i~lid~~t~~~i~~~~~~l~~~E~v~si~~v~l~~~~~~~~~~~~ivVGT~~~~~ed~~~~GrI~vf~i~~vvpe~g~~ 312 (638)
.+++.|..+.+.+. .+++.. .+.++ .+. ...+++++ .|.|++|++... .+.
T Consensus 82 ~v~iWd~~~~~~~~--~~~~~~--~v~~v---~~~--------~~~~~~~~----------~~~i~i~d~~~~----~~~ 132 (355)
T 3vu4_A 82 VVHIWDDVKKQDVS--RIKVDA--PVKDL---FLS--------REFIVVSY----------GDVISVFKFGNP----WKR 132 (355)
T ss_dssp EEEEEETTTTEEEE--EEECSS--CEEEE---EEC--------SSEEEEEE----------TTEEEEEESSTT----CCB
T ss_pred EEEEEECCCCcEEE--EEECCC--ceEEE---EEc--------CCEEEEEE----------cCEEEEEECCCC----cee
Confidence 68899888877765 455433 44444 342 23455543 467999987530 011
Q ss_pred cccCceEEEEEEeeCCceEEEccccCeeEEEec---CEEEEEEeeCCc-------------eee-eEEeec-ceeEEEEe
Q psy92 313 LTKNKIKMIYAKEQKGPVTAICHVAGFLVTAVG---QKIYIWQLKDND-------------LTG-IAFIDT-EVYIASMV 374 (638)
Q Consensus 313 ~t~~kLkl~~~~~~~G~V~al~~~~g~Ll~avg---~~l~v~~l~~~~-------------L~~-~a~~d~-~~~i~~i~ 374 (638)
-..++. ...+.+++. ++|+++.| .+|++|++...+ +.+ ...+.. ...|+++.
T Consensus 133 --~~~~~~------~~~~~~~s~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~ 202 (355)
T 3vu4_A 133 --ITDDIR------FGGVCEFSN--GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVR 202 (355)
T ss_dssp --SSCCEE------EEEEEEEET--TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEE
T ss_pred --eEEecc------CCceEEEEc--cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEE
Confidence 122222 233445544 55655423 479999998533 112 222222 23455555
Q ss_pred e--ecCEEEEeeccCc-EEEEEEeccCCeEEEEeccCCCcceeeeecccCCCCCcccccccceeeeeecccccccccccc
Q psy92 375 S--VKNLILVGDYARS-IALLRYQPEYRTLSLVARDYKPTQPNSKGYYAGNPSRGIIDGSLVWKFLQLSLGERLEICKKI 451 (638)
Q Consensus 375 ~--~~~~IlvgD~~~S-v~ll~~~~~~~~l~~~arD~~~~~v~~~~~l~~~~~~~~vd~~~~~~~~~~~~gd~~~~~~r~ 451 (638)
. .+++++.|..-.. |.+...+. ...+..+.+......++++.|- .|
T Consensus 203 ~s~~g~~l~s~s~d~~~v~iwd~~~-~~~~~~~~~g~h~~~v~~~~~s--------~~---------------------- 251 (355)
T 3vu4_A 203 LNRKSDMVATCSQDGTIIRVFKTED-GVLVREFRRGLDRADVVDMKWS--------TD---------------------- 251 (355)
T ss_dssp ECTTSSEEEEEETTCSEEEEEETTT-CCEEEEEECTTCCSCEEEEEEC--------TT----------------------
T ss_pred ECCCCCEEEEEeCCCCEEEEEECCC-CcEEEEEEcCCCCCcEEEEEEC--------CC----------------------
Confidence 4 4678888888777 76654432 2333334323345668888774 33
Q ss_pred CCcccccccCCCceeEEEEeCCCcEEEEEeCC
Q psy92 452 GSKHNDILDEFSSMGFMISDKDKNVVLFMYQP 483 (638)
Q Consensus 452 ~~~~~~~~~~~~~l~~l~aD~~~nl~v~~~~~ 483 (638)
+. .++.+..++.+.++....
T Consensus 252 ----------~~--~l~s~s~d~~v~iw~~~~ 271 (355)
T 3vu4_A 252 ----------GS--KLAVVSDKWTLHVFEIFN 271 (355)
T ss_dssp ----------SC--EEEEEETTCEEEEEESSC
T ss_pred ----------CC--EEEEEECCCEEEEEEccC
Confidence 33 477778899999998764
No 95
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=95.18 E-value=2.2 Score=44.03 Aligned_cols=208 Identities=11% Similarity=0.083 Sum_probs=111.0
Q ss_pred EcCCeEEEEEeCCCCCCC-CCceeEEEeC-CCcccEEEEecCCCEEEEEEeeecCCCcccccCCccccccCCCCCCCCCC
Q psy92 149 NAKSELRISVLPTHLSYD-APWPVRKVPL-KCTPHFLAYHLETKTYCIVTSTAEPSTDYYKFNGEDKELVTDPRDSRFIP 226 (638)
Q Consensus 149 ~~~~~L~I~~l~~~~~~~-~~~~~r~ipL-~~tp~ri~y~~~~~~~~V~~s~~~~~~~~~~~~~e~~e~~~~~~~~~~~~ 226 (638)
..++.++|-.++...... ..-+++.+.- ...+..++++|..+.+++.++.
T Consensus 101 s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~---------------------------- 152 (402)
T 2aq5_A 101 SEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGC---------------------------- 152 (402)
T ss_dssp ETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEET----------------------------
T ss_pred eCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcC----------------------------
Confidence 357889998887642100 0023344442 3457788888876433333321
Q ss_pred CcccccEEEEEeCCCceeecceeec-CCCceeEeEEEEEEeeccCccCCcccEEEEeecccCCCCcccceeEEEEEEEEe
Q psy92 227 PLVSQFHVSLFSPFSWEEIPQTNFP-LHEWEHVLCLKNVSMEYEGTLSGLRGYIALGTNYNYSEDVTCRGRILLFDIIEV 305 (638)
Q Consensus 227 p~~~~~~i~lid~~t~~~i~~~~~~-l~~~E~v~si~~v~l~~~~~~~~~~~~ivVGT~~~~~ed~~~~GrI~vf~i~~v 305 (638)
.+.|++.|..+.+.+. .+. ......+.|++ +.. ...+|++|+ ..|.|.+|++..
T Consensus 153 ----dg~i~iwd~~~~~~~~--~~~~~~~~~~v~~~~---~~~------~~~~l~~~~---------~d~~i~iwd~~~- 207 (402)
T 2aq5_A 153 ----DNVILVWDVGTGAAVL--TLGPDVHPDTIYSVD---WSR------DGALICTSC---------RDKRVRVIEPRK- 207 (402)
T ss_dssp ----TSCEEEEETTTTEEEE--EECTTTCCSCEEEEE---ECT------TSSCEEEEE---------TTSEEEEEETTT-
T ss_pred ----CCEEEEEECCCCCccE--EEecCCCCCceEEEE---ECC------CCCEEEEEe---------cCCcEEEEeCCC-
Confidence 1236777766666543 332 11223455543 432 246777776 578999998642
Q ss_pred ecCCCCccccCceEEEEEEeeCCc-eEEEc-cccCeeEEEe-----cCEEEEEEeeCCce-eeeEEeecceeEEEEeee-
Q psy92 306 VPEPGQPLTKNKIKMIYAKEQKGP-VTAIC-HVAGFLVTAV-----GQKIYIWQLKDNDL-TGIAFIDTEVYIASMVSV- 376 (638)
Q Consensus 306 vpe~g~~~t~~kLkl~~~~~~~G~-V~al~-~~~g~Ll~av-----g~~l~v~~l~~~~L-~~~a~~d~~~~i~~i~~~- 376 (638)
.+..........++ +++++ .-+|.++++. ..+|++|++...+. .....++....+.++...
T Consensus 208 ----------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~ 277 (402)
T 2aq5_A 208 ----------GTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDP 277 (402)
T ss_dssp ----------TEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEET
T ss_pred ----------CceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEeccCCCceeEEEEcC
Confidence 12111111223343 56554 2356655543 56899999985442 222233334445555443
Q ss_pred -cCEEE-EeeccCcEEEEEEeccCCeEEEEeccCCCcceeeeecc
Q psy92 377 -KNLIL-VGDYARSIALLRYQPEYRTLSLVARDYKPTQPNSKGYY 419 (638)
Q Consensus 377 -~~~Il-vgD~~~Sv~ll~~~~~~~~l~~~arD~~~~~v~~~~~l 419 (638)
+++++ +|..-..|.++.+......+..+..-.....+.++.|.
T Consensus 278 ~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~s 322 (402)
T 2aq5_A 278 DTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYM 322 (402)
T ss_dssp TTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEEC
T ss_pred CCCEEEEEEcCCCeEEEEEecCCCcceEeecccccCCcccceEEe
Confidence 56775 56566788888876544324444332244567777775
No 96
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=95.05 E-value=0.063 Score=55.67 Aligned_cols=110 Identities=9% Similarity=0.154 Sum_probs=61.1
Q ss_pred ccEEEEeecccCCCC-cccceeEEEEEEEEeecCCCCccccCceEEEEEEeeCCceEEEcc-ccC-eeEEEe-cCEEEEE
Q psy92 276 RGYIALGTNYNYSED-VTCRGRILLFDIIEVVPEPGQPLTKNKIKMIYAKEQKGPVTAICH-VAG-FLVTAV-GQKIYIW 351 (638)
Q Consensus 276 ~~~ivVGT~~~~~ed-~~~~GrI~vf~i~~vvpe~g~~~t~~kLkl~~~~~~~G~V~al~~-~~g-~Ll~av-g~~l~v~ 351 (638)
+.++++|+....... ....|.|.+|++... ...+.+......++|++++- -+| +|+++. ..+|++|
T Consensus 25 ~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~----------~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~vw 94 (416)
T 2pm9_A 25 IPLLVSGTVSGTVDANFSTDSSLELWSLLAA----------DSEKPIASLQVDSKFNDLDWSHNNKIIAGALDNGSLELY 94 (416)
T ss_dssp SCEEEEBCBSSCCCSSCCCCCCCEEEESSSG----------GGCSCSCCCCCSSCEEEEEECSSSSCEEEEESSSCEEEE
T ss_pred CCEEEEEecCcccccccCCCCeEEEEEccCC----------CCCcEEEEEecCCceEEEEECCCCCeEEEEccCCeEEEe
Confidence 468998864221100 125789999987531 11112222235788998873 234 454443 3589999
Q ss_pred EeeCC--ceeeeEEe-ecceeEEEEeee---cCEEEEeeccCcEEEEEEe
Q psy92 352 QLKDN--DLTGIAFI-DTEVYIASMVSV---KNLILVGDYARSIALLRYQ 395 (638)
Q Consensus 352 ~l~~~--~L~~~a~~-d~~~~i~~i~~~---~~~IlvgD~~~Sv~ll~~~ 395 (638)
++... .......+ .....|.++... +++++.|..-..|.++...
T Consensus 95 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~ 144 (416)
T 2pm9_A 95 STNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMN 144 (416)
T ss_dssp CCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTT
T ss_pred ecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECC
Confidence 99851 11122222 223345555543 6788888887787776554
No 97
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=95.02 E-value=2.9 Score=40.91 Aligned_cols=103 Identities=10% Similarity=0.140 Sum_probs=66.4
Q ss_pred ccEEEEeecccCCCCcccceeEEEEEEEEeecCCCCccccCceEEEEEE-eeCCceEEEcccc---CeeEEEec--CEEE
Q psy92 276 RGYIALGTNYNYSEDVTCRGRILLFDIIEVVPEPGQPLTKNKIKMIYAK-EQKGPVTAICHVA---GFLVTAVG--QKIY 349 (638)
Q Consensus 276 ~~~ivVGT~~~~~ed~~~~GrI~vf~i~~vvpe~g~~~t~~kLkl~~~~-~~~G~V~al~~~~---g~Ll~avg--~~l~ 349 (638)
..+|+.|. ..|.|.+|++.. + ....+++... ...++|++++-.. +.++++.+ ..|+
T Consensus 23 ~~~l~~~~---------~dg~i~iw~~~~-----~----~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~ 84 (351)
T 3f3f_A 23 GRHVATCS---------SDQHIKVFKLDK-----D----TSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVK 84 (351)
T ss_dssp SSEEEEEE---------TTSEEEEEEECS-----S----SCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEE
T ss_pred CCEEEEee---------CCCeEEEEECCC-----C----CCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEE
Confidence 46888887 679999999863 1 1233444433 4689999997542 55544433 4899
Q ss_pred EEEeeCCc-------eeeeEEe-ecceeEEEEeee----cCEEEEeeccCcEEEEEEec
Q psy92 350 IWQLKDND-------LTGIAFI-DTEVYIASMVSV----KNLILVGDYARSIALLRYQP 396 (638)
Q Consensus 350 v~~l~~~~-------L~~~a~~-d~~~~i~~i~~~----~~~IlvgD~~~Sv~ll~~~~ 396 (638)
+|++...+ +.....+ .....+.++... ++++++|..-..|.++..+.
T Consensus 85 vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~ 143 (351)
T 3f3f_A 85 LWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALE 143 (351)
T ss_dssp EEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSS
T ss_pred EEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCC
Confidence 99998542 1223333 234456666654 67899999888888876543
No 98
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=95.02 E-value=0.23 Score=50.76 Aligned_cols=144 Identities=13% Similarity=0.089 Sum_probs=81.3
Q ss_pred ccEEEEeecccCCCCcccceeEEEEEEEEeecCCCCccccCceEEEEE-EeeCCceEEEccc-cCe-eEEEe-cCEEEEE
Q psy92 276 RGYIALGTNYNYSEDVTCRGRILLFDIIEVVPEPGQPLTKNKIKMIYA-KEQKGPVTAICHV-AGF-LVTAV-GQKIYIW 351 (638)
Q Consensus 276 ~~~ivVGT~~~~~ed~~~~GrI~vf~i~~vvpe~g~~~t~~kLkl~~~-~~~~G~V~al~~~-~g~-Ll~av-g~~l~v~ 351 (638)
..+|+.|+ ..|.|.+|++.. .+.+.+.. ....++|++++-. +|. |+++. ..+|++|
T Consensus 23 g~~l~~~~---------~d~~i~iw~~~~-----------~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vw 82 (377)
T 3dwl_C 23 RTEFVTTT---------ATNQVELYEQDG-----------NGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVY 82 (377)
T ss_dssp SSEEECCC---------SSSCBCEEEEET-----------TEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC
T ss_pred CCEEEEec---------CCCEEEEEEccC-----------CceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEE
Confidence 46888886 578999999863 11122221 1357889998743 344 44443 3589999
Q ss_pred EeeCCc-eeeeEEe-ecceeEEEEee--ecCEEEEeeccCcEEEEEEeccCC--eEEEEeccCCCcceeeeecccCCCCC
Q psy92 352 QLKDND-LTGIAFI-DTEVYIASMVS--VKNLILVGDYARSIALLRYQPEYR--TLSLVARDYKPTQPNSKGYYAGNPSR 425 (638)
Q Consensus 352 ~l~~~~-L~~~a~~-d~~~~i~~i~~--~~~~IlvgD~~~Sv~ll~~~~~~~--~l~~~arD~~~~~v~~~~~l~~~~~~ 425 (638)
++..++ +.....+ .....+.++.. .++++++|..-..|.++.++.... .+..+. ......++++.|-
T Consensus 83 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-~~h~~~v~~~~~~------ 155 (377)
T 3dwl_C 83 EKRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLK-RPLRSTILSLDWH------ 155 (377)
T ss_dssp ------CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEEC-SSCCSCEEEEEEC------
T ss_pred EcCCCCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEee-cccCCCeEEEEEc------
Confidence 998655 3333322 23445666654 367889998888888766543221 122222 2234567777774
Q ss_pred cccccccceeeeeeccccccccccccCCcccccccCCCceeEEEEeCCCcEEEEEeC
Q psy92 426 GIIDGSLVWKFLQLSLGERLEICKKIGSKHNDILDEFSSMGFMISDKDKNVVLFMYQ 482 (638)
Q Consensus 426 ~~vd~~~~~~~~~~~~gd~~~~~~r~~~~~~~~~~~~~~l~~l~aD~~~nl~v~~~~ 482 (638)
.| +. .++.+..++.+.++...
T Consensus 156 --~~--------------------------------~~--~l~~~~~d~~i~iwd~~ 176 (377)
T 3dwl_C 156 --PN--------------------------------NV--LLAAGCADRKAYVLSAY 176 (377)
T ss_dssp --TT--------------------------------SS--EEEEEESSSCEEEEEEC
T ss_pred --CC--------------------------------CC--EEEEEeCCCEEEEEEEE
Confidence 33 32 47777889999999875
No 99
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=94.97 E-value=1.4 Score=49.78 Aligned_cols=148 Identities=11% Similarity=0.093 Sum_probs=86.5
Q ss_pred ccEEEEeecccCCCCcccceeEEEEEEEEeecCCCCccccCceEEEEEEeeCCceEEEcc-ccCeeEEEe--cCEEEEEE
Q psy92 276 RGYIALGTNYNYSEDVTCRGRILLFDIIEVVPEPGQPLTKNKIKMIYAKEQKGPVTAICH-VAGFLVTAV--GQKIYIWQ 352 (638)
Q Consensus 276 ~~~ivVGT~~~~~ed~~~~GrI~vf~i~~vvpe~g~~~t~~kLkl~~~~~~~G~V~al~~-~~g~Ll~av--g~~l~v~~ 352 (638)
..+|+.|. ..|.|.+|++... .. ........-....++|++++- -+|.++++. ..+|++|+
T Consensus 395 ~~~l~s~s---------~D~~i~~W~~~~~-----~~--~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd 458 (694)
T 3dm0_A 395 ADIIVSAS---------RDKSIILWKLTKD-----DK--AYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWD 458 (694)
T ss_dssp CSEEEEEE---------TTSEEEEEECCCS-----TT--CSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred CCEEEEEe---------CCCcEEEEEccCC-----Cc--ccccccceecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEE
Confidence 45777666 6789999997541 11 011222223356789998873 345544443 35899999
Q ss_pred eeCCceeeeEEeecceeEEEEee--ecCEEEEeeccCcEEEEEEeccCCeEEEEec--cCCCcceeeeecccCCCCCccc
Q psy92 353 LKDNDLTGIAFIDTEVYIASMVS--VKNLILVGDYARSIALLRYQPEYRTLSLVAR--DYKPTQPNSKGYYAGNPSRGII 428 (638)
Q Consensus 353 l~~~~L~~~a~~d~~~~i~~i~~--~~~~IlvgD~~~Sv~ll~~~~~~~~l~~~ar--D~~~~~v~~~~~l~~~~~~~~v 428 (638)
+...+.... +......|.++.. .+++|+.|..-..|.+.. ........+.. .....+++++.|- .
T Consensus 459 ~~~~~~~~~-~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd--~~~~~~~~~~~~~~~h~~~v~~~~~~--------~ 527 (694)
T 3dm0_A 459 LAAGVSTRR-FVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWN--TLGECKYTISEGGEGHRDWVSCVRFS--------P 527 (694)
T ss_dssp TTTTEEEEE-EECCSSCEEEEEECTTSSCEEEEETTSCEEEEC--TTSCEEEEECSSTTSCSSCEEEEEEC--------S
T ss_pred CCCCcceeE-EeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEE--CCCCcceeeccCCCCCCCcEEEEEEe--------C
Confidence 986654322 2222334555554 467888888888887754 32232222222 2344567777774 2
Q ss_pred ccccceeeeeeccccccccccccCCcccccccCCCceeEEEEeCCCcEEEEEeC
Q psy92 429 DGSLVWKFLQLSLGERLEICKKIGSKHNDILDEFSSMGFMISDKDKNVVLFMYQ 482 (638)
Q Consensus 429 d~~~~~~~~~~~~gd~~~~~~r~~~~~~~~~~~~~~l~~l~aD~~~nl~v~~~~ 482 (638)
+ .....++.+..++.+.++...
T Consensus 528 ~--------------------------------~~~~~l~s~s~d~~v~vwd~~ 549 (694)
T 3dm0_A 528 N--------------------------------TLQPTIVSASWDKTVKVWNLS 549 (694)
T ss_dssp C--------------------------------SSSCEEEEEETTSCEEEEETT
T ss_pred C--------------------------------CCcceEEEEeCCCeEEEEECC
Confidence 3 211247788889999998764
No 100
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=94.94 E-value=3.4 Score=43.09 Aligned_cols=129 Identities=14% Similarity=0.178 Sum_probs=77.0
Q ss_pred cEEEEEeCCCceeecceeecCCC-ceeEeEEEEEEeeccCccCCcccEEEEeecccCCCCcccceeEEEEEEEEeecCCC
Q psy92 232 FHVSLFSPFSWEEIPQTNFPLHE-WEHVLCLKNVSMEYEGTLSGLRGYIALGTNYNYSEDVTCRGRILLFDIIEVVPEPG 310 (638)
Q Consensus 232 ~~i~lid~~t~~~i~~~~~~l~~-~E~v~si~~v~l~~~~~~~~~~~~ivVGT~~~~~ed~~~~GrI~vf~i~~vvpe~g 310 (638)
.+|+|-|..+.+.+. .++++. ...|+|++ |.. ...+|++|+ ..|.|.+|++..
T Consensus 125 ~tV~lWd~~tg~~~~--~~~~~~~~~~V~sv~---fsp------dg~~lasgs---------~Dg~v~iWd~~~------ 178 (420)
T 4gga_A 125 NSVYLWSASSGDILQ--LLQMEQPGEYISSVA---WIK------EGNYLAVGT---------SSAEVQLWDVQQ------ 178 (420)
T ss_dssp TEEEEEETTTCCEEE--EEECCSTTCCEEEEE---ECT------TSSEEEEEE---------TTSCEEEEETTT------
T ss_pred CEEEEEECCCCCEEE--EEEecCCCCcEEEEE---ECC------CCCEEEEEE---------CCCeEEEEEcCC------
Confidence 468999988887765 566654 45677764 432 247999998 688999998632
Q ss_pred CccccCceEEEEE-EeeCCceEEEccccCeeEEEec--CEEEEEEeeCCceeeeEEee---cceeEEEEeeecCEEEEee
Q psy92 311 QPLTKNKIKMIYA-KEQKGPVTAICHVAGFLVTAVG--QKIYIWQLKDNDLTGIAFID---TEVYIASMVSVKNLILVGD 384 (638)
Q Consensus 311 ~~~t~~kLkl~~~-~~~~G~V~al~~~~g~Ll~avg--~~l~v~~l~~~~L~~~a~~d---~~~~i~~i~~~~~~IlvgD 384 (638)
. +.+.. ....+.|.++.. ++.++++.+ ..+.+|+....... +..+. ...........+++++.|.
T Consensus 179 -----~--~~~~~~~~h~~~v~~~s~-~~~~l~sgs~d~~i~~~d~~~~~~~-~~~~~~h~~~~~~~~~~~~g~~l~s~~ 249 (420)
T 4gga_A 179 -----Q--KRLRNMTSHSARVGSLSW-NSYILSSGSRSGHIHHHDVRVAEHH-VATLSGHSQEVCGLRWAPDGRHLASGG 249 (420)
T ss_dssp -----T--EEEEEECCCSSCEEEEEE-ETTEEEEEETTSEEEEEETTSSSCE-EEEEECCSSCEEEEEECTTSSEEEEEE
T ss_pred -----C--cEEEEEeCCCCceEEEee-CCCEEEEEeCCCceeEeeeccccee-eEEecccccceeeeeecCCCCeeeeee
Confidence 1 22222 234678888864 555555443 37778877643211 12221 1222222333467888887
Q ss_pred ccCcEEEEEEe
Q psy92 385 YARSIALLRYQ 395 (638)
Q Consensus 385 ~~~Sv~ll~~~ 395 (638)
.-..+.+....
T Consensus 250 ~D~~v~i~~~~ 260 (420)
T 4gga_A 250 NDNLVNVWPSA 260 (420)
T ss_dssp TTSCEEEEESS
T ss_pred ccccceEEeec
Confidence 77777776554
No 101
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=94.92 E-value=2.7 Score=41.93 Aligned_cols=168 Identities=9% Similarity=0.036 Sum_probs=91.8
Q ss_pred eEEEeCCCcccEEEEecCCCEEEEEEeeecCCCcccccCCccccccCCCCCCCCCCCcccccEEEEEeCCCceeecceee
Q psy92 171 VRKVPLKCTPHFLAYHLETKTYCIVTSTAEPSTDYYKFNGEDKELVTDPRDSRFIPPLVSQFHVSLFSPFSWEEIPQTNF 250 (638)
Q Consensus 171 ~r~ipL~~tp~ri~y~~~~~~~~V~~s~~~~~~~~~~~~~e~~e~~~~~~~~~~~~p~~~~~~i~lid~~t~~~i~~~~~ 250 (638)
...++++..|..++++|..+.++++..... +......|.++|..+.+.+. .+
T Consensus 34 ~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~--------------------------~~~~~~~v~~~d~~~~~~~~--~~ 85 (353)
T 3vgz_A 34 MLRKAVGKGAYEMAYSQQENALWLATSQSR--------------------------KLDKGGVVYRLDPVTLEVTQ--AI 85 (353)
T ss_dssp EEEEEEESSEEEEEEETTTTEEEEEECCCT--------------------------TTEESEEEEEECTTTCCEEE--EE
T ss_pred hhhhhhccCccceEECCCCCEEEEEcCCCc--------------------------CCCCCccEEEEcCCCCeEEE--EE
Confidence 456788889999999999887766543210 00123578899988887765 44
Q ss_pred cCCCceeEeEEEEEEeeccCccCCcccEEEEeecccCCCCcccceeEEEEEEEEeecCCCCccccCceEEEEEEeeCC--
Q psy92 251 PLHEWEHVLCLKNVSMEYEGTLSGLRGYIALGTNYNYSEDVTCRGRILLFDIIEVVPEPGQPLTKNKIKMIYAKEQKG-- 328 (638)
Q Consensus 251 ~l~~~E~v~si~~v~l~~~~~~~~~~~~ivVGT~~~~~ed~~~~GrI~vf~i~~vvpe~g~~~t~~kLkl~~~~~~~G-- 328 (638)
..... +.++ .+.. ...+++|+.. ..|.|.+|+... .++ +......+
T Consensus 86 ~~~~~--~~~~---~~s~------dg~~l~v~~~--------~~~~v~~~d~~~-----------~~~--~~~~~~~~~~ 133 (353)
T 3vgz_A 86 HNDLK--PFGA---TINN------TTQTLWFGNT--------VNSAVTAIDAKT-----------GEV--KGRLVLDDRK 133 (353)
T ss_dssp EESSC--CCSE---EEET------TTTEEEEEET--------TTTEEEEEETTT-----------CCE--EEEEESCCCC
T ss_pred ecCCC--cceE---EECC------CCCEEEEEec--------CCCEEEEEeCCC-----------Cee--EEEEecCCCc
Confidence 43322 2222 2322 1244555542 346788876421 121 12222211
Q ss_pred --------ceEEEc--cccCeeEEEe---cCEEEEEEeeCCceeeeEEee-cceeEEEEe--eecCEEEEeeccCcEEEE
Q psy92 329 --------PVTAIC--HVAGFLVTAV---GQKIYIWQLKDNDLTGIAFID-TEVYIASMV--SVKNLILVGDYARSIALL 392 (638)
Q Consensus 329 --------~V~al~--~~~g~Ll~av---g~~l~v~~l~~~~L~~~a~~d-~~~~i~~i~--~~~~~IlvgD~~~Sv~ll 392 (638)
.+.++. .-+++|+++. +.+|++|+....++... +. ....+..+. ..++++++++.-..+.
T Consensus 134 ~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~--~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~-- 209 (353)
T 3vgz_A 134 RTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTA--IQNTGKMSTGLALDSEGKRLYTTNADGELI-- 209 (353)
T ss_dssp CCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEE--ECCCCTTCCCCEEETTTTEEEEECTTSEEE--
T ss_pred cccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEE--ecCCCCccceEEECCCCCEEEEEcCCCeEE--
Confidence 134443 3345677665 45799998876654432 22 222233333 3578899998765555
Q ss_pred EEeccCCeEE
Q psy92 393 RYQPEYRTLS 402 (638)
Q Consensus 393 ~~~~~~~~l~ 402 (638)
.|+....+..
T Consensus 210 ~~d~~~~~~~ 219 (353)
T 3vgz_A 210 TIDTADNKIL 219 (353)
T ss_dssp EEETTTTEEE
T ss_pred EEECCCCeEE
Confidence 4665555543
No 102
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=94.85 E-value=3.7 Score=41.24 Aligned_cols=102 Identities=13% Similarity=0.228 Sum_probs=58.4
Q ss_pred cceeEEEEEEEEeecCCCCccccCceEEEEEEeeC--Cc--------eEEEc-cccCeeEEEe--cCEEEEEEee-CCce
Q psy92 293 CRGRILLFDIIEVVPEPGQPLTKNKIKMIYAKEQK--GP--------VTAIC-HVAGFLVTAV--GQKIYIWQLK-DNDL 358 (638)
Q Consensus 293 ~~GrI~vf~i~~vvpe~g~~~t~~kLkl~~~~~~~--G~--------V~al~-~~~g~Ll~av--g~~l~v~~l~-~~~L 358 (638)
..|.+.+|++.. +.+++.+...... || +++++ .-+|+|+++. +.+|++|++. ++++
T Consensus 106 ~~~~v~v~~~~~----------~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~ 175 (347)
T 3hfq_A 106 HKGTAEVMKIAA----------DGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQL 175 (347)
T ss_dssp TTTEEEEEEECT----------TSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCE
T ss_pred CCCEEEEEEeCC----------CCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcE
Confidence 357899998752 1244544443332 22 55553 2356666553 4589999998 5666
Q ss_pred eeeEEeec--ceeEEEEee--ecCEEEEeecc-CcEEEEEEeccCCeEEEE
Q psy92 359 TGIAFIDT--EVYIASMVS--VKNLILVGDYA-RSIALLRYQPEYRTLSLV 404 (638)
Q Consensus 359 ~~~a~~d~--~~~i~~i~~--~~~~IlvgD~~-~Sv~ll~~~~~~~~l~~~ 404 (638)
.....+.. ...+..+.. .+.++++.+.. ..+.++.++....++..+
T Consensus 176 ~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~ 226 (347)
T 3hfq_A 176 SEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQL 226 (347)
T ss_dssp EEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEE
T ss_pred EEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEe
Confidence 65443322 223444443 35678776554 567788877655665443
No 103
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=94.73 E-value=2 Score=44.54 Aligned_cols=85 Identities=11% Similarity=0.239 Sum_probs=48.0
Q ss_pred CCCceeEeEEEEEEeeccCccCCcccEEEEeecccCCCCcccceeEEEEEEEEeecCCCCccccCceEEEEEEe-eC---
Q psy92 252 LHEWEHVLCLKNVSMEYEGTLSGLRGYIALGTNYNYSEDVTCRGRILLFDIIEVVPEPGQPLTKNKIKMIYAKE-QK--- 327 (638)
Q Consensus 252 l~~~E~v~si~~v~l~~~~~~~~~~~~ivVGT~~~~~ed~~~~GrI~vf~i~~vvpe~g~~~t~~kLkl~~~~~-~~--- 327 (638)
+.+...|.|+ .|.. ...+|+.|+ ..|.|.+|++....... +.....++++.... ..
T Consensus 25 ~~~~~~V~~v---~~s~------~g~~la~g~---------~dg~v~iw~~~~~~~~~--~~~~~~~~~~~~~~~h~~~~ 84 (447)
T 3dw8_B 25 VAEADIISTV---EFNH------SGELLATGD---------KGGRVVIFQQEQENKIQ--SHSRGEYNVYSTFQSHEPEF 84 (447)
T ss_dssp CCGGGSEEEE---EECS------SSSEEEEEE---------TTSEEEEEEECC-------CCCCCCEEEEEEEECCCCEE
T ss_pred ccccCcEEEE---EECC------CCCEEEEEc---------CCCeEEEEEecCCCCCC--cccccceeEecccccccccc
Confidence 3344556665 4432 247899998 67999999986421100 00112333333222 23
Q ss_pred ---------CceEEEcccc----CeeEEE-ecCEEEEEEeeCC
Q psy92 328 ---------GPVTAICHVA----GFLVTA-VGQKIYIWQLKDN 356 (638)
Q Consensus 328 ---------G~V~al~~~~----g~Ll~a-vg~~l~v~~l~~~ 356 (638)
++|++++-.. .+|+++ ....|++|++..+
T Consensus 85 ~~~~~~~~~~~V~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~ 127 (447)
T 3dw8_B 85 DYLKSLEIEEKINKIRWLPQKNAAQFLLSTNDKTIKLWKISER 127 (447)
T ss_dssp EGGGTEEECCCCCEEEECCCCSSSEEEEEECSSCEEEEEEEEE
T ss_pred cccccccccCceEEEEEcCCCCcceEEEeCCCCeEEEEecccc
Confidence 8899987443 245555 4458999998753
No 104
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=94.63 E-value=11 Score=45.72 Aligned_cols=160 Identities=14% Similarity=0.120 Sum_probs=103.6
Q ss_pred EEEEEe--eCCceEEEcc--cc----CeeEEEec-----------CEEEEEEeeCCceeeeEEeecceeEEEEeeecCEE
Q psy92 320 MIYAKE--QKGPVTAICH--VA----GFLVTAVG-----------QKIYIWQLKDNDLTGIAFIDTEVYIASMVSVKNLI 380 (638)
Q Consensus 320 l~~~~~--~~G~V~al~~--~~----g~Ll~avg-----------~~l~v~~l~~~~L~~~a~~d~~~~i~~i~~~~~~I 380 (638)
.++..+ ....+.|++. |. .+|++|.+ ..|++|++.+++|..+...+..-.++++...++++
T Consensus 819 ~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv~~~~v~g~v~al~~~~g~L 898 (1158)
T 3ei3_A 819 VLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEKEVKGAVYSMVEFNGKL 898 (1158)
T ss_dssp EEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEEEEEEEESSCEEEEEEETTEE
T ss_pred EEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCEEEEEEEEEcCCcCEEEeeeCCEE
Confidence 344444 4567777764 32 47877762 36899999988888888888888899999999998
Q ss_pred EEeeccCcEEEEEEeccCCeEEEEeccCCCcceeeeecccCCCCCcccccccceeeeeeccccccccccccCCccccccc
Q psy92 381 LVGDYARSIALLRYQPEYRTLSLVARDYKPTQPNSKGYYAGNPSRGIIDGSLVWKFLQLSLGERLEICKKIGSKHNDILD 460 (638)
Q Consensus 381 lvgD~~~Sv~ll~~~~~~~~l~~~arD~~~~~v~~~~~l~~~~~~~~vd~~~~~~~~~~~~gd~~~~~~r~~~~~~~~~~ 460 (638)
++| +-+.+.++.|..+. .|..-++.+...-++.+...
T Consensus 899 la~-ig~~l~vy~l~~~~-~L~~~~~~~~~i~~~~l~~~----------------------------------------- 935 (1158)
T 3ei3_A 899 LAS-INSTVRLYEWTTEK-ELRTECNHYNNIMALYLKTK----------------------------------------- 935 (1158)
T ss_dssp EEE-ETTEEEEEEECTTS-CEEEEEEECCCSCEEEEEEE-----------------------------------------
T ss_pred EEE-cCCEEEEEECCCCc-eEEEEeeccccEEEEEEecc-----------------------------------------
Confidence 887 56888888887542 33311222211101111111
Q ss_pred CCCceeEEEEeCCCcEEEEEeCCCCcCCCCCceEEEEeeeecCcceeeEEEEeccCCCCCCCCCCCCceEEEEEeCCCcE
Q psy92 461 EFSSMGFMISDKDKNVVLFMYQPEARESNGGHRLIKKTDFHLGQHVNTFFKIRCKPSSISDAPGARSRFLTWYASLDGAL 540 (638)
Q Consensus 461 ~~~~l~~l~aD~~~nl~v~~~~~~~~~s~~~~~L~~~~~f~lg~~v~~~~~~~~~~~~~~~~~~~~~~~~il~~t~~GsI 540 (638)
++ .++++|....++++.|+++ ..+|...+.=.....+++..-+. ...++.+=.+|.|
T Consensus 936 -~~--~I~vgD~~~Sv~~~~y~~~------~~~L~~~a~D~~~~~vta~~~ld--------------~~t~l~aD~~gNl 992 (1158)
T 3ei3_A 936 -GD--FILVGDLMRSVLLLAYKPM------EGNFEEIARDFNPNWMSAVEILD--------------DDNFLGAENAFNL 992 (1158)
T ss_dssp -TT--EEEEEESSBCEEEEEEETT------TTEEEEEEECCSCBCEEEEEEEE--------------TTEEEEEETTSEE
T ss_pred -CC--EEEEEEhhheEEEEEEEcC------CCeEEEEEeecccccEEEEEEEc--------------cCcEEEEcCCCcE
Confidence 22 5899999999999999874 35777777555555555554432 1246667777777
Q ss_pred EEEEe
Q psy92 541 GFFLP 545 (638)
Q Consensus 541 g~l~p 545 (638)
..+.-
T Consensus 993 ~vl~~ 997 (1158)
T 3ei3_A 993 FVCQK 997 (1158)
T ss_dssp EEEEE
T ss_pred EEEec
Confidence 76653
No 105
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=94.59 E-value=0.22 Score=52.78 Aligned_cols=144 Identities=7% Similarity=0.084 Sum_probs=79.2
Q ss_pred ccEEEEeecccCCCCcccceeEEEEEEEEeecCCCCccccCceEEEEEEe-eCCceEEEcc-ccCeeEEEec--CEEEEE
Q psy92 276 RGYIALGTNYNYSEDVTCRGRILLFDIIEVVPEPGQPLTKNKIKMIYAKE-QKGPVTAICH-VAGFLVTAVG--QKIYIW 351 (638)
Q Consensus 276 ~~~ivVGT~~~~~ed~~~~GrI~vf~i~~vvpe~g~~~t~~kLkl~~~~~-~~G~V~al~~-~~g~Ll~avg--~~l~v~ 351 (638)
..+|+.|. ..|.|.+|++.. ..++.+.... ....+++++- -+|.++++.+ ..|++|
T Consensus 177 ~~~l~s~s---------~D~~v~iwd~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~w 236 (435)
T 4e54_B 177 TNQFYASS---------MEGTTRLQDFKG-----------NILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILL 236 (435)
T ss_dssp TTEEEEEC---------SSSCEEEEETTS-----------CEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEE
T ss_pred CCEEEEEe---------CCCEEEEeeccC-----------CceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeee
Confidence 35677665 568899998631 2344333222 3445666542 2454444433 479999
Q ss_pred EeeCCceeeeEEeecceeEEEEeee--c-CEEEEeeccCcEEEEEEeccCCeEEEEeccCCCcceeeeecccCCCCCccc
Q psy92 352 QLKDNDLTGIAFIDTEVYIASMVSV--K-NLILVGDYARSIALLRYQPEYRTLSLVARDYKPTQPNSKGYYAGNPSRGII 428 (638)
Q Consensus 352 ~l~~~~L~~~a~~d~~~~i~~i~~~--~-~~IlvgD~~~Sv~ll~~~~~~~~l~~~arD~~~~~v~~~~~l~~~~~~~~v 428 (638)
++..+.+..... ....|+++... + .+++.|..-..|.++..+.................|+++.|- .
T Consensus 237 d~~~~~~~~~~~--h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s--------p 306 (435)
T 4e54_B 237 NMDGKELWNLRM--HKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFS--------P 306 (435)
T ss_dssp ESSSCBCCCSBC--CSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBC--------T
T ss_pred ccCcceeEEEec--ccceEEeeeecCCCceEEEEecCcceeeEEecccccccceEEEeeeccccccceeEC--------C
Confidence 997655432211 12345566543 3 467777776777776443221111122222334567777663 3
Q ss_pred ccccceeeeeeccccccccccccCCcccccccCCCceeEEEEeCCCcEEEEEeCC
Q psy92 429 DGSLVWKFLQLSLGERLEICKKIGSKHNDILDEFSSMGFMISDKDKNVVLFMYQP 483 (638)
Q Consensus 429 d~~~~~~~~~~~~gd~~~~~~r~~~~~~~~~~~~~~l~~l~aD~~~nl~v~~~~~ 483 (638)
| +. .++.+..++.|.++....
T Consensus 307 d--------------------------------g~--~l~s~~~D~~i~iwd~~~ 327 (435)
T 4e54_B 307 D--------------------------------GA--RLLTTDQKSEIRVYSASQ 327 (435)
T ss_dssp T--------------------------------SS--EEEEEESSSCEEEEESSS
T ss_pred C--------------------------------CC--eeEEEcCCCEEEEEECCC
Confidence 3 33 477888999999987653
No 106
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=94.55 E-value=4.4 Score=40.78 Aligned_cols=190 Identities=14% Similarity=0.145 Sum_probs=103.8
Q ss_pred ccEEEEeecccCCCCcccceeEEEEEEEEeecCCCCccccCceEEEEE-EeeCCceEEEcc-ccCeeEEEe--cCEEEEE
Q psy92 276 RGYIALGTNYNYSEDVTCRGRILLFDIIEVVPEPGQPLTKNKIKMIYA-KEQKGPVTAICH-VAGFLVTAV--GQKIYIW 351 (638)
Q Consensus 276 ~~~ivVGT~~~~~ed~~~~GrI~vf~i~~vvpe~g~~~t~~kLkl~~~-~~~~G~V~al~~-~~g~Ll~av--g~~l~v~ 351 (638)
..+|+.|. ..|.|.+|++.. .+ ...+.+.. ....++|++++- -+|.++++. ..+|++|
T Consensus 119 g~~las~s---------~D~~v~iwd~~~----~~-----~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW 180 (330)
T 2hes_X 119 GYYLATCS---------RDKSVWIWETDE----SG-----EEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIW 180 (330)
T ss_dssp SCEEEEEE---------TTSCEEEEECCT----TC-----CCCEEEEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEE
T ss_pred CCEEEEEe---------CCCEEEEEeccC----CC-----CCeEEEEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEE
Confidence 46888887 678999998742 11 12233332 235688999863 245444443 3589999
Q ss_pred EeeCCceeeeEEeec-ceeEEEEeee----cCEEEEeeccCcEEEEEEeccCC------eEEEEeccCCCcceeeeeccc
Q psy92 352 QLKDNDLTGIAFIDT-EVYIASMVSV----KNLILVGDYARSIALLRYQPEYR------TLSLVARDYKPTQPNSKGYYA 420 (638)
Q Consensus 352 ~l~~~~L~~~a~~d~-~~~i~~i~~~----~~~IlvgD~~~Sv~ll~~~~~~~------~l~~~arD~~~~~v~~~~~l~ 420 (638)
+........+..+.. ...|.++... +.+++.|..-..|.+..+..... .....-......+++++.|-
T Consensus 181 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s- 259 (330)
T 2hes_X 181 KDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWG- 259 (330)
T ss_dssp EEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEEC-
T ss_pred ECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEeeecccccccceEEEEEc-
Confidence 987654333333322 2345555544 34778888888888887753211 11111122244567777663
Q ss_pred CCCCCcccccccceeeeeeccccccccccccCCcccccccCCCceeEEEEeCCCcEEEEEeCCCCcCCCCCceEE-EEee
Q psy92 421 GNPSRGIIDGSLVWKFLQLSLGERLEICKKIGSKHNDILDEFSSMGFMISDKDKNVVLFMYQPEARESNGGHRLI-KKTD 499 (638)
Q Consensus 421 ~~~~~~~vd~~~~~~~~~~~~gd~~~~~~r~~~~~~~~~~~~~~l~~l~aD~~~nl~v~~~~~~~~~s~~~~~L~-~~~~ 499 (638)
+ +. .++.+..++.+.++..... ..++. ....
T Consensus 260 --------~--------------------------------~~--~l~s~~~dg~v~iw~~~~~------~~~~~~~~~~ 291 (330)
T 2hes_X 260 --------F--------------------------------NG--LIASVGADGVLAVYEEVDG------EWKVFAKRAL 291 (330)
T ss_dssp --------T--------------------------------TS--CEEEEETTSCEEEEEEETT------EEEEEEEESC
T ss_pred --------C--------------------------------CC--EEEEEeCCCEEEEEEcCCC------ceEEEecccc
Confidence 2 22 3677788999999886431 01111 1111
Q ss_pred eecCcceeeEEEEeccCCCCCCCCCCCCceEEEEEeCCCcEEEE
Q psy92 500 FHLGQHVNTFFKIRCKPSSISDAPGARSRFLTWYASLDGALGFF 543 (638)
Q Consensus 500 f~lg~~v~~~~~~~~~~~~~~~~~~~~~~~~il~~t~~GsIg~l 543 (638)
-|-+..|+++.-.+ ......++.++.||.|-+.
T Consensus 292 ~h~~~~v~~v~~~~-----------~~~~~~las~s~Dg~v~~W 324 (330)
T 2hes_X 292 CHGVYEINVVKWLE-----------LNGKTILATGGDDGIVNFW 324 (330)
T ss_dssp TTTTSCEEEEEEC----------------CCEEEEETTSEEEEE
T ss_pred ccccceEEEEEEec-----------CCCceEEEEecCCCcEEEE
Confidence 23222455542211 0023457788999998654
No 107
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=94.22 E-value=5.3 Score=40.41 Aligned_cols=195 Identities=8% Similarity=0.021 Sum_probs=102.6
Q ss_pred CCcEEEEEc--CCeEEEEEeCCCCCCCCCceeEEEeCCC------cccEEEEecCCCEEEEEEeeecCCCcccccCCccc
Q psy92 142 PRGFLYFNA--KSELRISVLPTHLSYDAPWPVRKVPLKC------TPHFLAYHLETKTYCIVTSTAEPSTDYYKFNGEDK 213 (638)
Q Consensus 142 ~~gfl~~~~--~~~L~I~~l~~~~~~~~~~~~r~ipL~~------tp~ri~y~~~~~~~~V~~s~~~~~~~~~~~~~e~~ 213 (638)
+++.+|+++ ++.+ ..++. ...-..++++++. .|+.|++ ...+.| |+.. +
T Consensus 93 ~~g~lyv~~~~~~~v--~~iD~----~t~~~~~~i~~g~~~~~~~~p~~i~~-~~~~ly-v~~~------------~--- 149 (328)
T 3dsm_A 93 SDEKAYVTQIWDYRI--FIINP----KTYEITGYIECPDMDMESGSTEQMVQ-YGKYVY-VNCW------------S--- 149 (328)
T ss_dssp ETTEEEEEEBSCSEE--EEEET----TTTEEEEEEECTTCCTTTCBCCCEEE-ETTEEE-EEEC------------T---
T ss_pred CCCeEEEEECCCCeE--EEEEC----CCCeEEEEEEcCCccccCCCcceEEE-ECCEEE-EEcC------------C---
Confidence 345677765 3444 34443 2235567899998 9999998 333343 3321 0
Q ss_pred cccCCCCCCCCCCCcccccEEEEEeCCCceeecceeecCCCceeEeEEEEEEeeccCccCCcccEEEEeecccCCCC--c
Q psy92 214 ELVTDPRDSRFIPPLVSQFHVSLFSPFSWEEIPQTNFPLHEWEHVLCLKNVSMEYEGTLSGLRGYIALGTNYNYSED--V 291 (638)
Q Consensus 214 e~~~~~~~~~~~~p~~~~~~i~lid~~t~~~i~~~~~~l~~~E~v~si~~v~l~~~~~~~~~~~~ivVGT~~~~~ed--~ 291 (638)
....|.++|+.+.+.+. .+.... .+.++ .+.. ...++ |++.-.+... .
T Consensus 150 ----------------~~~~v~viD~~t~~~~~--~i~~g~--~p~~i---~~~~------dG~l~-v~~~~~~~~~~~~ 199 (328)
T 3dsm_A 150 ----------------YQNRILKIDTETDKVVD--ELTIGI--QPTSL---VMDK------YNKMW-TITDGGYEGSPYG 199 (328)
T ss_dssp ----------------TCCEEEEEETTTTEEEE--EEECSS--CBCCC---EECT------TSEEE-EEBCCBCTTCSSC
T ss_pred ----------------CCCEEEEEECCCCeEEE--EEEcCC--Cccce---EEcC------CCCEE-EEECCCccCCccc
Confidence 01358888888877665 444322 22222 2221 12344 4442221110 1
Q ss_pred ccceeEEEEEEEEeecCCCCccccCceEEEEEEeeC--CceEEEccc-cCeeEEEecCEEEEEEeeCCceeeeEEeec-c
Q psy92 292 TCRGRILLFDIIEVVPEPGQPLTKNKIKMIYAKEQK--GPVTAICHV-AGFLVTAVGQKIYIWQLKDNDLTGIAFIDT-E 367 (638)
Q Consensus 292 ~~~GrI~vf~i~~vvpe~g~~~t~~kLkl~~~~~~~--G~V~al~~~-~g~Ll~avg~~l~v~~l~~~~L~~~a~~d~-~ 367 (638)
...++|++++.. ..++ +....+. ..+..|+-- +|+.+...+.+|++|+....++....++.. .
T Consensus 200 ~~~~~v~~id~~-----------t~~v--~~~~~~~~g~~p~~la~~~d~~~lyv~~~~v~~~d~~t~~~~~~~~~~~~~ 266 (328)
T 3dsm_A 200 YEAPSLYRIDAE-----------TFTV--EKQFKFKLGDWPSEVQLNGTRDTLYWINNDIWRMPVEADRVPVRPFLEFRD 266 (328)
T ss_dssp BCCCEEEEEETT-----------TTEE--EEEEECCTTCCCEEEEECTTSCEEEEESSSEEEEETTCSSCCSSCSBCCCS
T ss_pred cCCceEEEEECC-----------CCeE--EEEEecCCCCCceeEEEecCCCEEEEEccEEEEEECCCCceeeeeeecCCC
Confidence 125788888632 1233 2222332 357777644 344444444588888887666644333332 2
Q ss_pred eeEEEEee--ecCEEEEeec---cCcEEEEEEeccCCeEE
Q psy92 368 VYIASMVS--VKNLILVGDY---ARSIALLRYQPEYRTLS 402 (638)
Q Consensus 368 ~~i~~i~~--~~~~IlvgD~---~~Sv~ll~~~~~~~~l~ 402 (638)
..+..|.+ .++.|+|+|. ..+=.+..|+.+...+.
T Consensus 267 ~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~g~~~~ 306 (328)
T 3dsm_A 267 TKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQGKLID 306 (328)
T ss_dssp SCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTTCCEEE
T ss_pred CceEEEEEcCCCCeEEEEcccccccCCEEEEECCCCCEEE
Confidence 34555655 4688999983 34556778887744333
No 108
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=94.18 E-value=3.6 Score=48.43 Aligned_cols=145 Identities=12% Similarity=0.200 Sum_probs=83.9
Q ss_pred CCCcccEEEEecCCCEEEEEEeeecCCCcccccCCccccccCCCCCCCCCCCcccccEEEEEeCCCceeecceeecCCCc
Q psy92 176 LKCTPHFLAYHLETKTYCIVTSTAEPSTDYYKFNGEDKELVTDPRDSRFIPPLVSQFHVSLFSPFSWEEIPQTNFPLHEW 255 (638)
Q Consensus 176 L~~tp~ri~y~~~~~~~~V~~s~~~~~~~~~~~~~e~~e~~~~~~~~~~~~p~~~~~~i~lid~~t~~~i~~~~~~l~~~ 255 (638)
....+..++|+|..+.+++++.. ..|++.+..+.+.+ +.+...
T Consensus 16 h~~~V~~lafspdg~~lAsgs~D---------------------------------g~I~lw~~~~~~~~----~~~~~~ 58 (902)
T 2oaj_A 16 MSSKPIAAAFDFTQNLLAIATVT---------------------------------GEVHIYGQQQVEVV----IKLEDR 58 (902)
T ss_dssp CSSCEEEEEEETTTTEEEEEETT---------------------------------SEEEEECSTTCEEE----EECSSC
T ss_pred CCCCcEEEEECCCCCEEEEEeCC---------------------------------CEEEEEeCCCcEEE----EEcCCC
Confidence 34568899999998877655411 24667766555443 223333
Q ss_pred eeEeEEEEEEeeccCccCCcccEEEEeecccCCCCcccceeEEEEEEEEeecCCCCccccCceEEEEEEeeCCceEEEcc
Q psy92 256 EHVLCLKNVSMEYEGTLSGLRGYIALGTNYNYSEDVTCRGRILLFDIIEVVPEPGQPLTKNKIKMIYAKEQKGPVTAICH 335 (638)
Q Consensus 256 E~v~si~~v~l~~~~~~~~~~~~ivVGT~~~~~ed~~~~GrI~vf~i~~vvpe~g~~~t~~kLkl~~~~~~~G~V~al~~ 335 (638)
..|.++ .|.. ..+|+.|. ..|.|.+|++.. .+ .++.....+.|++++-
T Consensus 59 ~~V~~l---~fsp-------g~~L~S~s---------~D~~v~lWd~~~-----------~~--~~~~~~~~~~V~~v~~ 106 (902)
T 2oaj_A 59 SAIKEM---RFVK-------GIYLVVIN---------AKDTVYVLSLYS-----------QK--VLTTVFVPGKITSIDT 106 (902)
T ss_dssp CCEEEE---EEET-------TTEEEEEE---------TTCEEEEEETTT-----------CS--EEEEEECSSCEEEEEC
T ss_pred CCEEEE---EEcC-------CCEEEEEE---------CcCeEEEEECCC-----------Cc--EEEEEcCCCCEEEEEE
Confidence 345554 4432 13777776 578999998642 12 2222246789999873
Q ss_pred c--cCeeEEEe-cCEEEEEEeeCCceeeeEE---------ee-cceeEEEEeeec---CEEEEeeccCcE
Q psy92 336 V--AGFLVTAV-GQKIYIWQLKDNDLTGIAF---------ID-TEVYIASMVSVK---NLILVGDYARSI 389 (638)
Q Consensus 336 ~--~g~Ll~av-g~~l~v~~l~~~~L~~~a~---------~d-~~~~i~~i~~~~---~~IlvgD~~~Sv 389 (638)
- ..+|++|. ..+|++|++...++..... .. -...|.++.... +.+++|..-..|
T Consensus 107 sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v 176 (902)
T 2oaj_A 107 DASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL 176 (902)
T ss_dssp CTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE
T ss_pred CCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE
Confidence 2 33555553 4589999998766542111 00 112455565543 577787665555
No 109
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=94.07 E-value=4.7 Score=39.22 Aligned_cols=90 Identities=11% Similarity=0.052 Sum_probs=48.5
Q ss_pred ceEEEccc-cCeeEEEe--cCEEEEEEeeCCceeeeEEeecceeEEEEeee-cCEEEEeeccCcEEEEEEeccCCeEEEE
Q psy92 329 PVTAICHV-AGFLVTAV--GQKIYIWQLKDNDLTGIAFIDTEVYIASMVSV-KNLILVGDYARSIALLRYQPEYRTLSLV 404 (638)
Q Consensus 329 ~V~al~~~-~g~Ll~av--g~~l~v~~l~~~~L~~~a~~d~~~~i~~i~~~-~~~IlvgD~~~Sv~ll~~~~~~~~l~~~ 404 (638)
.+.+|+-- +|.|+++- +..|++|+...+.+...........+..|... ++.++|+|....=.+..|+.+...+..+
T Consensus 165 ~p~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~g~~~~~~ 244 (286)
T 1q7f_A 165 FPNGVVVNDKQEIFISDNRAHCVKVFNYEGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQDGQLISAL 244 (286)
T ss_dssp SEEEEEECSSSEEEEEEGGGTEEEEEETTCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTTSCEEEEE
T ss_pred CcEEEEECCCCCEEEEECCCCEEEEEcCCCCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECCCCCEEEEE
Confidence 46677633 57887775 56899998754333222110001345666654 3578888876532344556665555555
Q ss_pred eccCCCcceeeeec
Q psy92 405 ARDYKPTQPNSKGY 418 (638)
Q Consensus 405 arD~~~~~v~~~~~ 418 (638)
........+.++.+
T Consensus 245 ~~~~~~~~~~~i~~ 258 (286)
T 1q7f_A 245 ESKVKHAQCFDVAL 258 (286)
T ss_dssp EESSCCSCEEEEEE
T ss_pred cccCCCCcceeEEE
Confidence 54333333444433
No 110
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=94.06 E-value=5.5 Score=39.93 Aligned_cols=115 Identities=10% Similarity=0.150 Sum_probs=60.6
Q ss_pred cceeEEEEEEEEeecCCCCccccCceEEEEEEee-CC-ceEEEc-cccCe-eEEEe--cCEEEEEEeeC--CceeeeEEe
Q psy92 293 CRGRILLFDIIEVVPEPGQPLTKNKIKMIYAKEQ-KG-PVTAIC-HVAGF-LVTAV--GQKIYIWQLKD--NDLTGIAFI 364 (638)
Q Consensus 293 ~~GrI~vf~i~~vvpe~g~~~t~~kLkl~~~~~~-~G-~V~al~-~~~g~-Ll~av--g~~l~v~~l~~--~~L~~~a~~ 364 (638)
..++|.+|++.. ..++..+..... .| .+..++ .-+|+ |+++. +.++.+|++.. .++.....+
T Consensus 160 ~~~~v~~~~~~~----------~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~ 229 (347)
T 3hfq_A 160 GSDKVYVYNVSD----------AGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIV 229 (347)
T ss_dssp TTTEEEEEEECT----------TSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEE
T ss_pred CCCEEEEEEECC----------CCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeee
Confidence 356899998752 134554443333 22 344443 23455 65543 46899999884 455444433
Q ss_pred ec-c------eeEEEEee--ecCEEEEeec-cCcEEEEEEeccCCeEEEEeccCC-Ccceeeeec
Q psy92 365 DT-E------VYIASMVS--VKNLILVGDY-ARSIALLRYQPEYRTLSLVARDYK-PTQPNSKGY 418 (638)
Q Consensus 365 d~-~------~~i~~i~~--~~~~IlvgD~-~~Sv~ll~~~~~~~~l~~~arD~~-~~~v~~~~~ 418 (638)
.. + ..+..+.. .+.++++++. ...|.++..+.. .++..+..-.. ..++.++.|
T Consensus 230 ~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~-g~~~~~~~~~~~~~~~~~~~~ 293 (347)
T 3hfq_A 230 KTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTAD-GHLTLIQQISTEGDFPRDFDL 293 (347)
T ss_dssp ESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGG-GCEEEEEEEECSSSCCCEEEE
T ss_pred eecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCC-CcEEEeEEEecCCCCcCeEEE
Confidence 22 1 23444443 4668877766 457888877643 24444433221 223444444
No 111
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=94.06 E-value=6.6 Score=40.86 Aligned_cols=144 Identities=13% Similarity=0.172 Sum_probs=84.8
Q ss_pred ccEEEEeecccCCCCcccceeEEEEEEEEeecCCCCccccCceEEEEEEeeCCceEEEc--cccCeeEEE-ec---CEEE
Q psy92 276 RGYIALGTNYNYSEDVTCRGRILLFDIIEVVPEPGQPLTKNKIKMIYAKEQKGPVTAIC--HVAGFLVTA-VG---QKIY 349 (638)
Q Consensus 276 ~~~ivVGT~~~~~ed~~~~GrI~vf~i~~vvpe~g~~~t~~kLkl~~~~~~~G~V~al~--~~~g~Ll~a-vg---~~l~ 349 (638)
..+++.|. ..|.+.+|++.. ++. ....+.......++|.+++ ..++.+++. .| .+|+
T Consensus 242 g~~l~s~~---------~D~~v~i~~~~~-----~~~---~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~ 304 (420)
T 4gga_A 242 GRHLASGG---------NDNLVNVWPSAP-----GEG---GWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIR 304 (420)
T ss_dssp SSEEEEEE---------TTSCEEEEESSC-----CSS---CSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEE
T ss_pred CCeeeeee---------ccccceEEeecc-----ccc---cceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEE
Confidence 46777776 567888887643 211 1111222345678888875 456666554 44 4899
Q ss_pred EEEeeCCceeeeEEeecceeEEEEee--ecCEEEEee--ccCcEEEEEEeccCCeEEEEeccCCCcceeeeecccCCCCC
Q psy92 350 IWQLKDNDLTGIAFIDTEVYIASMVS--VKNLILVGD--YARSIALLRYQPEYRTLSLVARDYKPTQPNSKGYYAGNPSR 425 (638)
Q Consensus 350 v~~l~~~~L~~~a~~d~~~~i~~i~~--~~~~IlvgD--~~~Sv~ll~~~~~~~~l~~~arD~~~~~v~~~~~l~~~~~~ 425 (638)
+|++...++.. .+.....+.++.. .++.++++- .-..|.++.+.. ...+..+. .+...|+++.|-
T Consensus 305 iwd~~t~~~~~--~~~~~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~-~~~v~~l~--gH~~~V~~l~~s------ 373 (420)
T 4gga_A 305 IWNVCSGACLS--AVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPT-MAKVAELK--GHTSRVLSLTMS------ 373 (420)
T ss_dssp EEETTTTEEEE--EEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTT-CCEEEEEC--CCSSCEEEEEEC------
T ss_pred EEeCCccccce--eeccccceeeeeecCCCCeEEEEEecCCCEEEEEECCC-CcEEEEEc--CCCCCEEEEEEc------
Confidence 99998766443 2344455555543 356776654 345666665532 22333332 123468888774
Q ss_pred cccccccceeeeeeccccccccccccCCcccccccCCCceeEEEEeCCCcEEEEEeCC
Q psy92 426 GIIDGSLVWKFLQLSLGERLEICKKIGSKHNDILDEFSSMGFMISDKDKNVVLFMYQP 483 (638)
Q Consensus 426 ~~vd~~~~~~~~~~~~gd~~~~~~r~~~~~~~~~~~~~~l~~l~aD~~~nl~v~~~~~ 483 (638)
.| +. .++.+..|+.|.+++...
T Consensus 374 --pd--------------------------------g~--~l~S~s~D~tvriWdv~~ 395 (420)
T 4gga_A 374 --PD--------------------------------GA--TVASAAADETLRLWRCFE 395 (420)
T ss_dssp --TT--------------------------------SS--CEEEEETTTEEEEECCSC
T ss_pred --CC--------------------------------CC--EEEEEecCCeEEEEECCC
Confidence 34 33 367788899999987654
No 112
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=94.01 E-value=0.3 Score=49.93 Aligned_cols=101 Identities=10% Similarity=-0.009 Sum_probs=57.1
Q ss_pred ccEEEEeecccCCCCcccceeEEEEEEEEeecCCCCccccCceEEE-EEEeeCCceEEEccc-cCe-eEEEe-cCEEEEE
Q psy92 276 RGYIALGTNYNYSEDVTCRGRILLFDIIEVVPEPGQPLTKNKIKMI-YAKEQKGPVTAICHV-AGF-LVTAV-GQKIYIW 351 (638)
Q Consensus 276 ~~~ivVGT~~~~~ed~~~~GrI~vf~i~~vvpe~g~~~t~~kLkl~-~~~~~~G~V~al~~~-~g~-Ll~av-g~~l~v~ 351 (638)
..+|+.|. ..|.|.+|++... ..++.+ ......++|++++-- +|. |+++. ...|++|
T Consensus 67 ~~~l~s~s---------~d~~v~vwd~~~~----------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iw 127 (377)
T 3dwl_C 67 SNRIVTCS---------QDRNAYVYEKRPD----------GTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVC 127 (377)
T ss_dssp TCCEEEEE---------TTSSEEEC----------------CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEEC
T ss_pred CCEEEEEe---------CCCeEEEEEcCCC----------CceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEE
Confidence 36788887 5689999998651 111111 122457899998743 444 44443 4589999
Q ss_pred EeeCCc-eeeeEEee--cceeEEEEeee--cCEEEEeeccCcEEEEEEe
Q psy92 352 QLKDND-LTGIAFID--TEVYIASMVSV--KNLILVGDYARSIALLRYQ 395 (638)
Q Consensus 352 ~l~~~~-L~~~a~~d--~~~~i~~i~~~--~~~IlvgD~~~Sv~ll~~~ 395 (638)
++...+ +.....+. ....+.++... +++++.|..-..|.++...
T Consensus 128 d~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~ 176 (377)
T 3dwl_C 128 YFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAY 176 (377)
T ss_dssp CC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEEESSSCEEEEEEC
T ss_pred EECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEE
Confidence 998554 11112222 34556666654 5789999888888888764
No 113
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=94.00 E-value=5.8 Score=40.01 Aligned_cols=127 Identities=13% Similarity=0.120 Sum_probs=70.7
Q ss_pred ccEEEEeecccCCCCcccceeEEEEEEEEeecCCCCccccCceEEEEEEeeCCceEEEccc-cCeeEEEe--cCEEEEEE
Q psy92 276 RGYIALGTNYNYSEDVTCRGRILLFDIIEVVPEPGQPLTKNKIKMIYAKEQKGPVTAICHV-AGFLVTAV--GQKIYIWQ 352 (638)
Q Consensus 276 ~~~ivVGT~~~~~ed~~~~GrI~vf~i~~vvpe~g~~~t~~kLkl~~~~~~~G~V~al~~~-~g~Ll~av--g~~l~v~~ 352 (638)
..+|+.|. ..|.|.+|++... .... ........-....++|++++-- ++.++++. ..+|++|+
T Consensus 39 ~~~l~sgs---------~D~~v~iWd~~~~----~~~~-~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd 104 (343)
T 2xzm_R 39 SPVLISGS---------RDKTVMIWKLYEE----EQNG-YFGIPHKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWD 104 (343)
T ss_dssp CCEEEEEE---------TTSCEEEEEECSS----CCSS-BSEEEEEEECCCSSCEEEEEECSSTTEEEEEETTSEEEEEE
T ss_pred CCEEEEEc---------CCCEEEEEECCcC----Cccc-ccccccchhccCCCceEEEEECCCCCEEEEEcCCCcEEEEE
Confidence 46888776 6789999998531 1100 0011111122356889988633 34444443 45899999
Q ss_pred eeCCceeeeEEeecceeEEEEee--ecCEEEEeeccCcEEEEEEeccCCeEEEEe-ccCCCcceeeeecc
Q psy92 353 LKDNDLTGIAFIDTEVYIASMVS--VKNLILVGDYARSIALLRYQPEYRTLSLVA-RDYKPTQPNSKGYY 419 (638)
Q Consensus 353 l~~~~L~~~a~~d~~~~i~~i~~--~~~~IlvgD~~~Sv~ll~~~~~~~~l~~~a-rD~~~~~v~~~~~l 419 (638)
+...+.... +..-...|.++.. .+++|+.|..-..|.+.... ........ ......++.++.|-
T Consensus 105 ~~~~~~~~~-~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~--~~~~~~~~~~~~~~~~v~~~~~~ 171 (343)
T 2xzm_R 105 LRTGTTYKR-FVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNIL--GECKFSSAEKENHSDWVSCVRYS 171 (343)
T ss_dssp TTSSCEEEE-EECCCSCEEEEEECSSTTEEEEEETTSCEEEEESS--SCEEEECCTTTSCSSCEEEEEEC
T ss_pred CCCCcEEEE-EcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEecc--CCceeeeecccCCCceeeeeeec
Confidence 986654321 1122334555554 46799999888888887543 22222221 12344567776663
No 114
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=94.00 E-value=6.1 Score=40.27 Aligned_cols=179 Identities=14% Similarity=0.137 Sum_probs=101.3
Q ss_pred ccEEEEeecccCCCCcccceeEEEEEEEEeecCCCCccccCceEEEEEE-eeCCceEEEcc--c-cCeeEEEe--cCEEE
Q psy92 276 RGYIALGTNYNYSEDVTCRGRILLFDIIEVVPEPGQPLTKNKIKMIYAK-EQKGPVTAICH--V-AGFLVTAV--GQKIY 349 (638)
Q Consensus 276 ~~~ivVGT~~~~~ed~~~~GrI~vf~i~~vvpe~g~~~t~~kLkl~~~~-~~~G~V~al~~--~-~g~Ll~av--g~~l~ 349 (638)
..+|+.|+ ..|.|.+|++.. + ++ +... ...++|++++- - .|.++++. ..+|+
T Consensus 166 ~~~l~t~s---------~D~~v~lwd~~~-----~------~~--~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~ 223 (354)
T 2pbi_B 166 DMQILTAS---------GDGTCALWDVES-----G------QL--LQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAM 223 (354)
T ss_dssp SSEEEEEE---------TTSEEEEEETTT-----C------CE--EEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEE
T ss_pred CCEEEEEe---------CCCcEEEEeCCC-----C------eE--EEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEE
Confidence 35677776 578999998632 1 21 2221 34678887752 2 34444443 46899
Q ss_pred EEEeeCCceeeeEEeecceeEEEEee--ecCEEEEeeccCcEEEEEEeccCCeEEEEeccCCCcceeeeecccCCCCCcc
Q psy92 350 IWQLKDNDLTGIAFIDTEVYIASMVS--VKNLILVGDYARSIALLRYQPEYRTLSLVARDYKPTQPNSKGYYAGNPSRGI 427 (638)
Q Consensus 350 v~~l~~~~L~~~a~~d~~~~i~~i~~--~~~~IlvgD~~~Sv~ll~~~~~~~~l~~~arD~~~~~v~~~~~l~~~~~~~~ 427 (638)
+|++...+.... +......|.++.. .+++++.|..-..|.++..+. ...+..+........++++.|-
T Consensus 224 ~wd~~~~~~~~~-~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~-~~~~~~~~~~~~~~~~~~~~~s-------- 293 (354)
T 2pbi_B 224 VWDMRSGQCVQA-FETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRA-DREVAIYSKESIIFGASSVDFS-------- 293 (354)
T ss_dssp EEETTTCCEEEE-ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT-TEEEEEECCTTCCSCEEEEEEC--------
T ss_pred EEECCCCcEEEE-ecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCC-CcEEEEEcCCCcccceeEEEEe--------
Confidence 999987664321 1122345666654 467999998888887765432 2233334433333456666663
Q ss_pred cccccceeeeeeccccccccccccCCcccccccCCCceeEEEEeCCCcEEEEEeCCCCcCCCCCceEEEEeeeecCccee
Q psy92 428 IDGSLVWKFLQLSLGERLEICKKIGSKHNDILDEFSSMGFMISDKDKNVVLFMYQPEARESNGGHRLIKKTDFHLGQHVN 507 (638)
Q Consensus 428 vd~~~~~~~~~~~~gd~~~~~~r~~~~~~~~~~~~~~l~~l~aD~~~nl~v~~~~~~~~~s~~~~~L~~~~~f~lg~~v~ 507 (638)
.| +. .++++..++.+.++.... +..+... .-| ...|+
T Consensus 294 ~~--------------------------------g~--~l~~g~~d~~i~vwd~~~-------~~~~~~l-~~h-~~~v~ 330 (354)
T 2pbi_B 294 LS--------------------------------GR--LLFAGYNDYTINVWDVLK-------GSRVSIL-FGH-ENRVS 330 (354)
T ss_dssp TT--------------------------------SS--EEEEEETTSCEEEEETTT-------CSEEEEE-CCC-SSCEE
T ss_pred CC--------------------------------CC--EEEEEECCCcEEEEECCC-------CceEEEE-ECC-CCcEE
Confidence 33 32 477788899999997643 2222211 112 33455
Q ss_pred eEEEEeccCCCCCCCCCCCCceEEEEEeCCCcEEE
Q psy92 508 TFFKIRCKPSSISDAPGARSRFLTWYASLDGALGF 542 (638)
Q Consensus 508 ~~~~~~~~~~~~~~~~~~~~~~~il~~t~~GsIg~ 542 (638)
++.-. + ....++.++.||.|-+
T Consensus 331 ~l~~s------------p-dg~~l~sgs~D~~v~v 352 (354)
T 2pbi_B 331 TLRVS------------P-DGTAFCSGSWDHTLRV 352 (354)
T ss_dssp EEEEC------------T-TSSCEEEEETTSEEEE
T ss_pred EEEEC------------C-CCCEEEEEcCCCCEEe
Confidence 44221 1 1235778889998854
No 115
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=93.76 E-value=5.8 Score=39.16 Aligned_cols=148 Identities=12% Similarity=0.191 Sum_probs=85.7
Q ss_pred ccEEEEeecccCCCCcccceeEEEEEEEEeecCCCCccccCceEEEEE-EeeCCceEEEcccc---Ce-eEEE-ecCEEE
Q psy92 276 RGYIALGTNYNYSEDVTCRGRILLFDIIEVVPEPGQPLTKNKIKMIYA-KEQKGPVTAICHVA---GF-LVTA-VGQKIY 349 (638)
Q Consensus 276 ~~~ivVGT~~~~~ed~~~~GrI~vf~i~~vvpe~g~~~t~~kLkl~~~-~~~~G~V~al~~~~---g~-Ll~a-vg~~l~ 349 (638)
..+|+.|. ..|.|.+|++.. + +.+.+.. ....++|.+++-.. |. |++| ...+|+
T Consensus 67 g~~l~s~s---------~D~~v~iWd~~~-----~------~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~ 126 (297)
T 2pm7_B 67 GTILASCS---------YDGKVMIWKEEN-----G------RWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVS 126 (297)
T ss_dssp CSEEEEEE---------TTTEEEEEEBSS-----S------CBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEE
T ss_pred CCEEEEEc---------CCCEEEEEEcCC-----C------ceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEE
Confidence 36777776 578999998742 1 1111111 23467899887432 44 4433 345899
Q ss_pred EEEeeCCc-eeeeEEeecceeEEEEeee---------------cCEEEEeeccCcEEEEEEeccCCeEEEEec-cCCCcc
Q psy92 350 IWQLKDND-LTGIAFIDTEVYIASMVSV---------------KNLILVGDYARSIALLRYQPEYRTLSLVAR-DYKPTQ 412 (638)
Q Consensus 350 v~~l~~~~-L~~~a~~d~~~~i~~i~~~---------------~~~IlvgD~~~Sv~ll~~~~~~~~l~~~ar-D~~~~~ 412 (638)
+|++.... .....+......+.++... +.+++.|..-..|.+..++........... .....+
T Consensus 127 ~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~ 206 (297)
T 2pm7_B 127 VVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDW 206 (297)
T ss_dssp EEEBCSSSCBCCEEEECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSC
T ss_pred EEEecCCCceeeeeeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCc
Confidence 99998543 2121111112234444332 358899988889999888754433322211 223456
Q ss_pred eeeeecccCCCCCcccccccceeeeeeccccccccccccCCcccccccCC-CceeEEEEeCCCcEEEEEeCC
Q psy92 413 PNSKGYYAGNPSRGIIDGSLVWKFLQLSLGERLEICKKIGSKHNDILDEF-SSMGFMISDKDKNVVLFMYQP 483 (638)
Q Consensus 413 v~~~~~l~~~~~~~~vd~~~~~~~~~~~~gd~~~~~~r~~~~~~~~~~~~-~~l~~l~aD~~~nl~v~~~~~ 483 (638)
|.++.|- .+ . ..-.++.+..++.+.++..+.
T Consensus 207 V~~v~~s--------p~--------------------------------~~~~~~las~s~D~~v~iWd~~~ 238 (297)
T 2pm7_B 207 VRDVAWS--------PT--------------------------------VLLRSYMASVSQDRTCIIWTQDN 238 (297)
T ss_dssp EEEEEEC--------CC--------------------------------CSSSEEEEEEETTSCEEEEEESS
T ss_pred eEEEEEC--------CC--------------------------------CCCceEEEEEECCCcEEEEEeCC
Confidence 8887773 22 1 011477788899999998764
No 116
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=93.65 E-value=6.4 Score=39.30 Aligned_cols=101 Identities=17% Similarity=0.291 Sum_probs=64.5
Q ss_pred ccEEEEeecccCCCCcccceeEEEEEEEEeecCCCCccccCceEEEEE-EeeCCceEEEccc---cCeeEEEe--cCEEE
Q psy92 276 RGYIALGTNYNYSEDVTCRGRILLFDIIEVVPEPGQPLTKNKIKMIYA-KEQKGPVTAICHV---AGFLVTAV--GQKIY 349 (638)
Q Consensus 276 ~~~ivVGT~~~~~ed~~~~GrI~vf~i~~vvpe~g~~~t~~kLkl~~~-~~~~G~V~al~~~---~g~Ll~av--g~~l~ 349 (638)
..+|+.|. ..|.|.+|++.. .+.+++.. +..+++|++++-. .|.++++. ..+|+
T Consensus 25 g~~lasgs---------~D~~v~lwd~~~-----------~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~ 84 (316)
T 3bg1_A 25 GTRLATCS---------SDRSVKIFDVRN-----------GGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVI 84 (316)
T ss_dssp GCEEEEEE---------TTTEEEEEEEET-----------TEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEE
T ss_pred CCEEEEEe---------CCCeEEEEEecC-----------CCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEE
Confidence 46788887 678999999863 12222332 3467899999732 35555444 35899
Q ss_pred EEEeeCCceeeeEEee-cceeEEEEeee----cCEEEEeeccCcEEEEEEec
Q psy92 350 IWQLKDNDLTGIAFID-TEVYIASMVSV----KNLILVGDYARSIALLRYQP 396 (638)
Q Consensus 350 v~~l~~~~L~~~a~~d-~~~~i~~i~~~----~~~IlvgD~~~Sv~ll~~~~ 396 (638)
+|++...++.....+. ....|.++... +.+++.|..-..|.+..++.
T Consensus 85 iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~ 136 (316)
T 3bg1_A 85 IWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTG 136 (316)
T ss_dssp EECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECS
T ss_pred EEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCC
Confidence 9999865543333322 22345555543 45889999888898887754
No 117
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=93.63 E-value=6.8 Score=39.56 Aligned_cols=90 Identities=11% Similarity=0.117 Sum_probs=52.1
Q ss_pred ceEEEc-cccCe-eEEEe--cCEEEEEEeeCCceeeeEEeecc----eeEEEEe--eecCEEEEeecc--CcEEEEEEec
Q psy92 329 PVTAIC-HVAGF-LVTAV--GQKIYIWQLKDNDLTGIAFIDTE----VYIASMV--SVKNLILVGDYA--RSIALLRYQP 396 (638)
Q Consensus 329 ~V~al~-~~~g~-Ll~av--g~~l~v~~l~~~~L~~~a~~d~~----~~i~~i~--~~~~~IlvgD~~--~Sv~ll~~~~ 396 (638)
.+.+++ .-+|+ |+++. +.+|.+|++.++++.....+... ..+..+. -.+.++++++.. ..+.++..+.
T Consensus 212 ~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~ 291 (361)
T 3scy_A 212 GPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDE 291 (361)
T ss_dssp CEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECT
T ss_pred CCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcC
Confidence 445544 23454 55554 56899999987766554443221 1133444 346788888876 6799988876
Q ss_pred cCCeEEEEeccCCCcceeeeec
Q psy92 397 EYRTLSLVARDYKPTQPNSKGY 418 (638)
Q Consensus 397 ~~~~l~~~arD~~~~~v~~~~~ 418 (638)
+..++..+..-....++.++.|
T Consensus 292 ~~g~~~~~~~~~~g~~~~~~~~ 313 (361)
T 3scy_A 292 TNGTLTKVGYQLTGIHPRNFII 313 (361)
T ss_dssp TTCCEEEEEEEECSSCCCEEEE
T ss_pred CCCcEEEeeEecCCCCCceEEE
Confidence 5556555443222334445545
No 118
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=93.51 E-value=6.3 Score=38.81 Aligned_cols=126 Identities=12% Similarity=0.109 Sum_probs=64.2
Q ss_pred ccEEEEeecccCCCCcccceeEEEEEEEEeecCCCCccccCceEEEEEEeeCCceEEEcc-ccCeeEEEe--cCEEEEEE
Q psy92 276 RGYIALGTNYNYSEDVTCRGRILLFDIIEVVPEPGQPLTKNKIKMIYAKEQKGPVTAICH-VAGFLVTAV--GQKIYIWQ 352 (638)
Q Consensus 276 ~~~ivVGT~~~~~ed~~~~GrI~vf~i~~vvpe~g~~~t~~kLkl~~~~~~~G~V~al~~-~~g~Ll~av--g~~l~v~~ 352 (638)
..+|+-|. ..|.|.+|++... +. ........-....++|++++- -+|.++++. ...|++|.
T Consensus 51 ~~~l~S~s---------~D~~i~vWd~~~~-----~~--~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~~ 114 (340)
T 4aow_A 51 PDMILSAS---------RDKTIIMWKLTRD-----ET--NYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWD 114 (340)
T ss_dssp TTEEEEEE---------TTSCEEEEEECCS-----SS--CSEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred CCEEEEEc---------CCCeEEEEECCCC-----Cc--ccceeeEEEeCCCCCEEEEEECCCCCEEEEEcccccceEEe
Confidence 36777665 5688999998641 11 111111111234689999873 245544443 34788888
Q ss_pred eeCCceeeeEEe-ecceeEEEEeeecCEEEEeeccCcEEEEEEeccCCeEEEEeccCCCcceeeeecc
Q psy92 353 LKDNDLTGIAFI-DTEVYIASMVSVKNLILVGDYARSIALLRYQPEYRTLSLVARDYKPTQPNSKGYY 419 (638)
Q Consensus 353 l~~~~L~~~a~~-d~~~~i~~i~~~~~~IlvgD~~~Sv~ll~~~~~~~~l~~~arD~~~~~v~~~~~l 419 (638)
............ ............+++++.|..-..+.+. +.................+..+.|-
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~--d~~~~~~~~~~~~~~~~~v~~~~~~ 180 (340)
T 4aow_A 115 LTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLW--NTLGVCKYTVQDESHSEWVSCVRFS 180 (340)
T ss_dssp TTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEE--CTTSCEEEEECSSSCSSCEEEEEEC
T ss_pred ecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEE--EeCCCceEEEEeccccCcccceEEc
Confidence 875543322211 1122222233346778888777766654 3333333333333334445555553
No 119
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=93.49 E-value=6.4 Score=38.87 Aligned_cols=131 Identities=13% Similarity=0.193 Sum_probs=72.8
Q ss_pred cEEEEEeCCCceeecceeecCCCceeEeEEEEEEeeccCccCCcccEEEEeecccCCCCcccceeEEEEEEEEeecCCCC
Q psy92 232 FHVSLFSPFSWEEIPQTNFPLHEWEHVLCLKNVSMEYEGTLSGLRGYIALGTNYNYSEDVTCRGRILLFDIIEVVPEPGQ 311 (638)
Q Consensus 232 ~~i~lid~~t~~~i~~~~~~l~~~E~v~si~~v~l~~~~~~~~~~~~ivVGT~~~~~ed~~~~GrI~vf~i~~vvpe~g~ 311 (638)
..|.++|..+.+.+. .+... ...+ + +.+... ..+++++.. ..++|++|+...
T Consensus 20 ~~v~~~d~~~~~~~~--~~~~~-~~~~-~---~~~s~d------g~~l~~~~~--------~~~~i~~~d~~~------- 71 (331)
T 3u4y_A 20 RRISFFSTDTLEILN--QITLG-YDFV-D---TAITSD------CSNVVVTSD--------FCQTLVQIETQL------- 71 (331)
T ss_dssp TEEEEEETTTCCEEE--EEECC-CCEE-E---EEECSS------SCEEEEEES--------TTCEEEEEECSS-------
T ss_pred CeEEEEeCcccceee--eEEcc-CCcc-e---EEEcCC------CCEEEEEeC--------CCCeEEEEECCC-------
Confidence 468889988777664 34433 2222 3 334321 244555442 356888887532
Q ss_pred ccccCceEEEEEEeeCCceE--EEccccCeeEEEecC----EEEEEEeeCCceeeeEEeecceeEEEEeee--cCEEEEe
Q psy92 312 PLTKNKIKMIYAKEQKGPVT--AICHVAGFLVTAVGQ----KIYIWQLKDNDLTGIAFIDTEVYIASMVSV--KNLILVG 383 (638)
Q Consensus 312 ~~t~~kLkl~~~~~~~G~V~--al~~~~g~Ll~avg~----~l~v~~l~~~~L~~~a~~d~~~~i~~i~~~--~~~Ilvg 383 (638)
.++.......-.++.. ++..-+.+|+++.+. +|.+|++...++... +.....+..+... +++++++
T Consensus 72 ----~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~--~~~~~~~~~~~~spdg~~l~~~ 145 (331)
T 3u4y_A 72 ----EPPKVVAIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFIST--IPIPYDAVGIAISPNGNGLILI 145 (331)
T ss_dssp ----SSCEEEEEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEE--EECCTTEEEEEECTTSSCEEEE
T ss_pred ----CceeEEecccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEE--EECCCCccceEECCCCCEEEEE
Confidence 2332222223455665 333444456655555 899999987665432 3333334555543 5578888
Q ss_pred ecc-Cc-EEEEEEec
Q psy92 384 DYA-RS-IALLRYQP 396 (638)
Q Consensus 384 D~~-~S-v~ll~~~~ 396 (638)
+.. .. +.++.++.
T Consensus 146 ~~~~~~~i~~~~~~~ 160 (331)
T 3u4y_A 146 DRSSANTVRRFKIDA 160 (331)
T ss_dssp EETTTTEEEEEEECT
T ss_pred ecCCCceEEEEEECC
Confidence 776 56 78777764
No 120
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=93.49 E-value=6.6 Score=38.98 Aligned_cols=173 Identities=12% Similarity=0.058 Sum_probs=92.5
Q ss_pred CceeEEEeCCCcccEEEEecCCCEEEEEEeeecCCCcccccCCccccccCCCCCCCCCCCcccccEEEEEeCCCceeecc
Q psy92 168 PWPVRKVPLKCTPHFLAYHLETKTYCIVTSTAEPSTDYYKFNGEDKELVTDPRDSRFIPPLVSQFHVSLFSPFSWEEIPQ 247 (638)
Q Consensus 168 ~~~~r~ipL~~tp~ri~y~~~~~~~~V~~s~~~~~~~~~~~~~e~~e~~~~~~~~~~~~p~~~~~~i~lid~~t~~~i~~ 247 (638)
.-..++++.+..|+.++++|..+.+++.... ...+.++|..+.+.+.
T Consensus 79 ~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~--------------------------------~~~v~~~d~~~~~~~~- 125 (353)
T 3vgz_A 79 LEVTQAIHNDLKPFGATINNTTQTLWFGNTV--------------------------------NSAVTAIDAKTGEVKG- 125 (353)
T ss_dssp CCEEEEEEESSCCCSEEEETTTTEEEEEETT--------------------------------TTEEEEEETTTCCEEE-
T ss_pred CeEEEEEecCCCcceEEECCCCCEEEEEecC--------------------------------CCEEEEEeCCCCeeEE-
Confidence 4567888999999999999998865554311 1247777877776654
Q ss_pred eeecCCCcee-----EeEEEEEEeeccCccCCcccEEEEeecccCCCCcccceeEEEEEEEEeecCCCCccccCceEEEE
Q psy92 248 TNFPLHEWEH-----VLCLKNVSMEYEGTLSGLRGYIALGTNYNYSEDVTCRGRILLFDIIEVVPEPGQPLTKNKIKMIY 322 (638)
Q Consensus 248 ~~~~l~~~E~-----v~si~~v~l~~~~~~~~~~~~ivVGT~~~~~ed~~~~GrI~vf~i~~vvpe~g~~~t~~kLkl~~ 322 (638)
.+.+..... ......+.+... ..+++++... ..|+|++|+... .+.+.
T Consensus 126 -~~~~~~~~~~~~~~~~~~~~~~~s~d------g~~l~~~~~~-------~~~~i~~~d~~~-------------~~~~~ 178 (353)
T 3vgz_A 126 -RLVLDDRKRTEEVRPLQPRELVADDA------TNTVYISGIG-------KESVIWVVDGGN-------------IKLKT 178 (353)
T ss_dssp -EEESCCCCCCSSCCCCEEEEEEEETT------TTEEEEEEES-------SSCEEEEEETTT-------------TEEEE
T ss_pred -EEecCCCccccccCCCCCceEEECCC------CCEEEEEecC-------CCceEEEEcCCC-------------CceEE
Confidence 444432211 111122334322 2445555411 357888887421 12222
Q ss_pred EEe-eCCceEEEc--cccCeeEEEe-cCEEEEEEeeCCceeeeEEe-e--cceeEEEEee--ecCEEEEeeccCcEEEEE
Q psy92 323 AKE-QKGPVTAIC--HVAGFLVTAV-GQKIYIWQLKDNDLTGIAFI-D--TEVYIASMVS--VKNLILVGDYARSIALLR 393 (638)
Q Consensus 323 ~~~-~~G~V~al~--~~~g~Ll~av-g~~l~v~~l~~~~L~~~a~~-d--~~~~i~~i~~--~~~~IlvgD~~~Sv~ll~ 393 (638)
... ....+.+++ .-+.+|+++. +.+|++|++.+.++...... . ...++..+.. .++++++++...+ .+..
T Consensus 179 ~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~-~v~~ 257 (353)
T 3vgz_A 179 AIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAA-EVLV 257 (353)
T ss_dssp EECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSS-EEEE
T ss_pred EecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCC-EEEE
Confidence 223 222244433 3344566654 45899999886665432221 1 1234444444 4788899886532 2444
Q ss_pred EeccCCeE
Q psy92 394 YQPEYRTL 401 (638)
Q Consensus 394 ~~~~~~~l 401 (638)
|+.+..++
T Consensus 258 ~d~~~~~~ 265 (353)
T 3vgz_A 258 VDTRNGNI 265 (353)
T ss_dssp EETTTCCE
T ss_pred EECCCCcE
Confidence 55544443
No 121
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=93.40 E-value=8 Score=39.68 Aligned_cols=201 Identities=9% Similarity=0.066 Sum_probs=103.0
Q ss_pred ccEEEEeecccCCCCcccceeEEEEEEEEeecCCCCccccCceEEEEEEeeCCceEEEcc-ccC-eeEEEecCEEEEEEe
Q psy92 276 RGYIALGTNYNYSEDVTCRGRILLFDIIEVVPEPGQPLTKNKIKMIYAKEQKGPVTAICH-VAG-FLVTAVGQKIYIWQL 353 (638)
Q Consensus 276 ~~~ivVGT~~~~~ed~~~~GrI~vf~i~~vvpe~g~~~t~~kLkl~~~~~~~G~V~al~~-~~g-~Ll~avg~~l~v~~l 353 (638)
..+++++|+- ..|.|.+|++. ..+.+...+..+.|++|+- -+| +|+.+...++.+|..
T Consensus 145 g~~la~as~~-------~d~~i~iwd~~-------------~~~~~~~~~~~~~V~~v~fspdg~~l~s~s~~~~~~~~~ 204 (365)
T 4h5i_A 145 GTVAAIASSK-------VPAIMRIIDPS-------------DLTEKFEIETRGEVKDLHFSTDGKVVAYITGSSLEVIST 204 (365)
T ss_dssp SSCEEEEESC-------SSCEEEEEETT-------------TTEEEEEEECSSCCCEEEECTTSSEEEEECSSCEEEEET
T ss_pred CCEEEEEECC-------CCCEEEEeECC-------------CCcEEEEeCCCCceEEEEEccCCceEEeccceeEEEEEe
Confidence 4778888742 24789999753 2233444457788999862 244 455556678888877
Q ss_pred eCCceeeeEEe-ecceeEEEEeee--cCEEEEeecc--CcEEEEEEeccCCe--EEEEec-cCCCcceeeeecccCCCCC
Q psy92 354 KDNDLTGIAFI-DTEVYIASMVSV--KNLILVGDYA--RSIALLRYQPEYRT--LSLVAR-DYKPTQPNSKGYYAGNPSR 425 (638)
Q Consensus 354 ~~~~L~~~a~~-d~~~~i~~i~~~--~~~IlvgD~~--~Sv~ll~~~~~~~~--l~~~ar-D~~~~~v~~~~~l~~~~~~ 425 (638)
.+.+....... .-...+.++... +.+++.+-.- ..+.+..|+..... ...... ......|+++.|=
T Consensus 205 ~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~S------ 278 (365)
T 4h5i_A 205 VTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVD------ 278 (365)
T ss_dssp TTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEEC------
T ss_pred ccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEEC------
Confidence 65543322222 223345555433 4566655433 34555555543222 211111 1234457777774
Q ss_pred cccccccceeeeeeccccccccccccCCcccccccCCCceeEEEEeCCCcEEEEEeCCCCcCCCCCceEEEEeeeecCcc
Q psy92 426 GIIDGSLVWKFLQLSLGERLEICKKIGSKHNDILDEFSSMGFMISDKDKNVVLFMYQPEARESNGGHRLIKKTDFHLGQH 505 (638)
Q Consensus 426 ~~vd~~~~~~~~~~~~gd~~~~~~r~~~~~~~~~~~~~~l~~l~aD~~~nl~v~~~~~~~~~s~~~~~L~~~~~f~lg~~ 505 (638)
.| +. .+..+..++.+.++.... ++.+...-.-|- ..
T Consensus 279 --pd--------------------------------g~--~lasgs~D~~V~iwd~~~-------~~~~~~~~~gH~-~~ 314 (365)
T 4h5i_A 279 --MK--------------------------------GE--LAVLASNDNSIALVKLKD-------LSMSKIFKQAHS-FA 314 (365)
T ss_dssp --TT--------------------------------SC--EEEEEETTSCEEEEETTT-------TEEEEEETTSSS-SC
T ss_pred --CC--------------------------------CC--ceEEEcCCCEEEEEECCC-------CcEEEEecCccc-CC
Confidence 34 33 366778899999987543 222322222332 34
Q ss_pred eeeEEEEeccCCCCCCCCCCCCceEEEEEeCCCcEEEEEeCChh------hHHHHHHHHHH
Q psy92 506 VNTFFKIRCKPSSISDAPGARSRFLTWYASLDGALGFFLPLPEK------NYRRLLMLQNV 560 (638)
Q Consensus 506 v~~~~~~~~~~~~~~~~~~~~~~~~il~~t~~GsIg~l~pl~~~------~~~~L~~Lq~~ 560 (638)
|+++.-. + ....++.++.||+|-+.- |++. ..++|..||..
T Consensus 315 V~~v~fS------------p-dg~~laS~S~D~tvrvw~-ip~~~~~~~s~~~~l~kl~~~ 361 (365)
T 4h5i_A 315 ITEVTIS------------P-DSTYVASVSAANTIHIIK-LPLNYANYTSMKQKISKLEHH 361 (365)
T ss_dssp EEEEEEC------------T-TSCEEEEEETTSEEEEEE-CCTTTTC--------------
T ss_pred EEEEEEC------------C-CCCEEEEEeCCCeEEEEE-cCCCCcCccCccccceeeecc
Confidence 6654221 1 124688899999997764 3321 23356666643
No 122
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=93.35 E-value=7.3 Score=39.10 Aligned_cols=198 Identities=10% Similarity=0.181 Sum_probs=102.9
Q ss_pred ccEEEEeecccCCCCcccceeEEEEEEEEeecCCCCccccCceEEEEE-EeeCCceEEEcc-ccCeeEEEe--cCEEEEE
Q psy92 276 RGYIALGTNYNYSEDVTCRGRILLFDIIEVVPEPGQPLTKNKIKMIYA-KEQKGPVTAICH-VAGFLVTAV--GQKIYIW 351 (638)
Q Consensus 276 ~~~ivVGT~~~~~ed~~~~GrI~vf~i~~vvpe~g~~~t~~kLkl~~~-~~~~G~V~al~~-~~g~Ll~av--g~~l~v~ 351 (638)
..+|+.|. ..|.|.+|++.... .. ....+.+.. ...+++|++++- -+|.++++. ..+|++|
T Consensus 70 ~~~las~s---------~D~~v~iw~~~~~~----~~--~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iw 134 (330)
T 2hes_X 70 TSLLAAGS---------FDSTVSIWAKEESA----DR--TFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIW 134 (330)
T ss_dssp SSEEEEEE---------TTSCEEEEEC-------------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEE
T ss_pred CCEEEEEe---------CCCcEEEEEcccCc----Cc--cccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEE
Confidence 46888887 57889999875310 00 012233332 234688999862 345555443 3589999
Q ss_pred EeeCC--ceeeeEEee-cceeEEEEee--ecCEEEEeeccCcEEEEEEeccCCeEEEEeccCCCcceeeeecccCCCCCc
Q psy92 352 QLKDN--DLTGIAFID-TEVYIASMVS--VKNLILVGDYARSIALLRYQPEYRTLSLVARDYKPTQPNSKGYYAGNPSRG 426 (638)
Q Consensus 352 ~l~~~--~L~~~a~~d-~~~~i~~i~~--~~~~IlvgD~~~Sv~ll~~~~~~~~l~~~arD~~~~~v~~~~~l~~~~~~~ 426 (638)
++.+. ....+..+. -...|.++.. .+++++.|..-..|.+........+....- .....+|.++.|-
T Consensus 135 d~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~-~~h~~~v~~~~~~------- 206 (330)
T 2hes_X 135 ETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVL-NGHEGTVWSSDFD------- 206 (330)
T ss_dssp ECCTTCCCCEEEEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEE-CCCSSCEEEEEEC-------
T ss_pred eccCCCCCeEEEEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEc-cCCCCcEEEEEec-------
Confidence 99532 223333332 2334666654 467899998888888876543221221111 1233457777674
Q ss_pred ccccccceeeeeeccccccccccccCCcccccccCCCceeEEEEeCCCcEEEEEeCCCCcCCCCCceEEEEeeee--cCc
Q psy92 427 IIDGSLVWKFLQLSLGERLEICKKIGSKHNDILDEFSSMGFMISDKDKNVVLFMYQPEARESNGGHRLIKKTDFH--LGQ 504 (638)
Q Consensus 427 ~vd~~~~~~~~~~~~gd~~~~~~r~~~~~~~~~~~~~~l~~l~aD~~~nl~v~~~~~~~~~s~~~~~L~~~~~f~--lg~ 504 (638)
.+ +....++.+..++.+.++........ ..........+. ...
T Consensus 207 -~~--------------------------------~~~~~l~s~s~D~~v~iw~~~~~~~~--~~~~~~~~~~~~~~h~~ 251 (330)
T 2hes_X 207 -KT--------------------------------EGVFRLCSGSDDSTVRVWKYMGDDED--DQQEWVCEAILPDVHKR 251 (330)
T ss_dssp -CS--------------------------------SSSCEEEEEETTSCEEEEEEEEECTT--SCEEEEEEEECCSCCSS
T ss_pred -CC--------------------------------CCeeEEEEEeCCCeEEEEEecCCCcc--ccceeEEeeeccccccc
Confidence 22 11224667788999999987542111 111222222221 123
Q ss_pred ceeeEEEEeccCCCCCCCCCCCCceEEEEEeCCCcEEEEEe
Q psy92 505 HVNTFFKIRCKPSSISDAPGARSRFLTWYASLDGALGFFLP 545 (638)
Q Consensus 505 ~v~~~~~~~~~~~~~~~~~~~~~~~~il~~t~~GsIg~l~p 545 (638)
.|.++.-. ....++.++.+|.|-+.-.
T Consensus 252 ~v~~v~~s--------------~~~~l~s~~~dg~v~iw~~ 278 (330)
T 2hes_X 252 QVYNVAWG--------------FNGLIASVGADGVLAVYEE 278 (330)
T ss_dssp CEEEEEEC--------------TTSCEEEEETTSCEEEEEE
T ss_pred ceEEEEEc--------------CCCEEEEEeCCCEEEEEEc
Confidence 34433211 1124778889999877654
No 123
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=93.27 E-value=6.8 Score=38.53 Aligned_cols=131 Identities=15% Similarity=0.179 Sum_probs=71.4
Q ss_pred cceeEEEEEEEEeecCCCCccccCceEEEEE-EeeCCceEEEcc-ccCeeEEEec--CEEEEEEeeCCceeeeEEeecce
Q psy92 293 CRGRILLFDIIEVVPEPGQPLTKNKIKMIYA-KEQKGPVTAICH-VAGFLVTAVG--QKIYIWQLKDNDLTGIAFIDTEV 368 (638)
Q Consensus 293 ~~GrI~vf~i~~vvpe~g~~~t~~kLkl~~~-~~~~G~V~al~~-~~g~Ll~avg--~~l~v~~l~~~~L~~~a~~d~~~ 368 (638)
..|.|.+|++.. .+ .+.. ....++|++|+- -+|.++++.+ .+|++|++...+.. ..+....
T Consensus 193 ~d~~i~i~d~~~-----------~~--~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~--~~~~~~~ 257 (340)
T 4aow_A 193 WDKLVKVWNLAN-----------CK--LKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHL--YTLDGGD 257 (340)
T ss_dssp TTSCEEEEETTT-----------TE--EEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEE--EEEECSS
T ss_pred CCCEEEEEECCC-----------Cc--eeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCcee--eeecCCc
Confidence 457788887532 12 2222 235789999863 3455555443 58999999865432 2334444
Q ss_pred eEEEEeee-cCEEEEeeccCcEEEEEEeccCCeEEE--------EeccCCCcceeeeecccCCCCCcccccccceeeeee
Q psy92 369 YIASMVSV-KNLILVGDYARSIALLRYQPEYRTLSL--------VARDYKPTQPNSKGYYAGNPSRGIIDGSLVWKFLQL 439 (638)
Q Consensus 369 ~i~~i~~~-~~~IlvgD~~~Sv~ll~~~~~~~~l~~--------~arD~~~~~v~~~~~l~~~~~~~~vd~~~~~~~~~~ 439 (638)
.+.++... ++++++|-.-.+|.++. .+...+.. ......+..|+++.|- .|
T Consensus 258 ~v~~~~~~~~~~~~~~~~d~~i~iwd--~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s--------~d---------- 317 (340)
T 4aow_A 258 IINALCFSPNRYWLCAATGPSIKIWD--LEGKIIVDELKQEVISTSSKAEPPQCTSLAWS--------AD---------- 317 (340)
T ss_dssp CEEEEEECSSSSEEEEEETTEEEEEE--TTTTEEEEEECCC-------CCCCCEEEEEEC--------TT----------
T ss_pred eEEeeecCCCCceeeccCCCEEEEEE--CCCCeEEEeccccceeeeccCCCCCEEEEEEC--------CC----------
Confidence 55555443 23444444444554433 22222211 1222345567777774 33
Q ss_pred ccccccccccccCCcccccccCCCceeEEEEeCCCcEEEEEeC
Q psy92 440 SLGERLEICKKIGSKHNDILDEFSSMGFMISDKDKNVVLFMYQ 482 (638)
Q Consensus 440 ~~gd~~~~~~r~~~~~~~~~~~~~~l~~l~aD~~~nl~v~~~~ 482 (638)
+. .++++..+|.|++++..
T Consensus 318 ----------------------g~--~l~sgs~Dg~v~iW~~~ 336 (340)
T 4aow_A 318 ----------------------GQ--TLFAGYTDNLVRVWQVT 336 (340)
T ss_dssp ----------------------SS--EEEEEETTSCEEEEEEE
T ss_pred ----------------------CC--EEEEEeCCCEEEEEeCC
Confidence 33 47788899999998764
No 124
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=93.12 E-value=7.7 Score=38.71 Aligned_cols=94 Identities=11% Similarity=0.173 Sum_probs=55.5
Q ss_pred cEEEEeecccCCCCcccceeEEEEEEEEeecCCCCccccCceEEEEE-EeeCCceEEEcc-ccCeeEEEec--CEEEEEE
Q psy92 277 GYIALGTNYNYSEDVTCRGRILLFDIIEVVPEPGQPLTKNKIKMIYA-KEQKGPVTAICH-VAGFLVTAVG--QKIYIWQ 352 (638)
Q Consensus 277 ~~ivVGT~~~~~ed~~~~GrI~vf~i~~vvpe~g~~~t~~kLkl~~~-~~~~G~V~al~~-~~g~Ll~avg--~~l~v~~ 352 (638)
.+++.|. ..|.|.+|++.. .+ .... ....++|++++- -+|.++++.+ .+|++|+
T Consensus 167 ~~l~s~~---------~d~~i~~wd~~~-----------~~--~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd 224 (319)
T 3frx_A 167 VTIISAG---------NDKMVKAWNLNQ-----------FQ--IEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWN 224 (319)
T ss_dssp CEEEEEE---------TTSCEEEEETTT-----------TE--EEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEE
T ss_pred cEEEEEe---------CCCEEEEEECCc-----------ch--hheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEE
Confidence 4666665 578899998632 12 2222 234688998863 3455555443 4899999
Q ss_pred eeCCceeeeEEeecceeEEEEee--ecCEEEEeeccCcEEEEEEe
Q psy92 353 LKDNDLTGIAFIDTEVYIASMVS--VKNLILVGDYARSIALLRYQ 395 (638)
Q Consensus 353 l~~~~L~~~a~~d~~~~i~~i~~--~~~~IlvgD~~~Sv~ll~~~ 395 (638)
+..++... .+..+..+.++.. .+.++++++ ..++.++.++
T Consensus 225 ~~~~~~~~--~~~~~~~v~~~~~sp~~~~la~~~-~~~i~v~~~~ 266 (319)
T 3frx_A 225 LAAKKAMY--TLSAQDEVFSLAFSPNRYWLAAAT-ATGIKVFSLD 266 (319)
T ss_dssp TTTTEEEE--EEECCSCEEEEEECSSSSEEEEEE-TTEEEEEEET
T ss_pred CCCCcEEE--EecCCCcEEEEEEcCCCCEEEEEc-CCCcEEEEeC
Confidence 98665432 2223334555543 356666665 4567776654
No 125
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=92.36 E-value=10 Score=38.16 Aligned_cols=129 Identities=12% Similarity=0.188 Sum_probs=67.4
Q ss_pred EEEEEeCCCceeecceeecCCCceeEeEEEEEEeeccCccCCcccEEEEeecccCCCCcccceeEEEEEEEEeecCCCCc
Q psy92 233 HVSLFSPFSWEEIPQTNFPLHEWEHVLCLKNVSMEYEGTLSGLRGYIALGTNYNYSEDVTCRGRILLFDIIEVVPEPGQP 312 (638)
Q Consensus 233 ~i~lid~~t~~~i~~~~~~l~~~E~v~si~~v~l~~~~~~~~~~~~ivVGT~~~~~ed~~~~GrI~vf~i~~vvpe~g~~ 312 (638)
.+++.|..+.+.+. .+.-.. ..|.|+ .+.. ...+++.|. ..|.|.+|++.. .
T Consensus 99 ~v~lwd~~~~~~~~--~~~~h~-~~v~~v---~~sp------~~~~l~s~~---------~d~~i~~wd~~~------~- 150 (343)
T 2xzm_R 99 TLRLWDLRTGTTYK--RFVGHQ-SEVYSV---AFSP------DNRQILSAG---------AEREIKLWNILG------E- 150 (343)
T ss_dssp EEEEEETTSSCEEE--EEECCC-SCEEEE---EECS------STTEEEEEE---------TTSCEEEEESSS------C-
T ss_pred cEEEEECCCCcEEE--EEcCCC-CcEEEE---EECC------CCCEEEEEc---------CCCEEEEEeccC------C-
Confidence 57777766655543 333222 234443 4432 246777776 578999998631 0
Q ss_pred cccCceEEEEEEeeCCceEEEccc------------cCeeEEE-ecCEEEEEEeeCCceeeeEEeecceeEEEEee--ec
Q psy92 313 LTKNKIKMIYAKEQKGPVTAICHV------------AGFLVTA-VGQKIYIWQLKDNDLTGIAFIDTEVYIASMVS--VK 377 (638)
Q Consensus 313 ~t~~kLkl~~~~~~~G~V~al~~~------------~g~Ll~a-vg~~l~v~~l~~~~L~~~a~~d~~~~i~~i~~--~~ 377 (638)
............+.|++++-- ..+|+++ ...+|++|+.. .++. ..+......+.++.. .+
T Consensus 151 ---~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~-~~~~-~~~~~h~~~v~~~~~s~~g 225 (343)
T 2xzm_R 151 ---CKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTN-FQIR-YTFKAHESNVNHLSISPNG 225 (343)
T ss_dssp ---EEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETT-TEEE-EEEECCSSCEEEEEECTTS
T ss_pred ---ceeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCC-Ccee-EEEcCccccceEEEECCCC
Confidence 000000001233456665421 1344444 35689999843 2221 112122334555554 46
Q ss_pred CEEEEeeccCcEEEEEE
Q psy92 378 NLILVGDYARSIALLRY 394 (638)
Q Consensus 378 ~~IlvgD~~~Sv~ll~~ 394 (638)
.+|+.|..-..|.+...
T Consensus 226 ~~l~sgs~dg~v~iwd~ 242 (343)
T 2xzm_R 226 KYIATGGKDKKLLIWDI 242 (343)
T ss_dssp SEEEEEETTCEEEEEES
T ss_pred CEEEEEcCCCeEEEEEC
Confidence 79999998888888765
No 126
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=91.89 E-value=13 Score=38.31 Aligned_cols=104 Identities=13% Similarity=0.239 Sum_probs=56.8
Q ss_pred cEEEEeecccCCCCcccceeEEEEEEEEeecCCCCccccCceEEEEEEe----------eCCceEEEccc-cC-eeEEEe
Q psy92 277 GYIALGTNYNYSEDVTCRGRILLFDIIEVVPEPGQPLTKNKIKMIYAKE----------QKGPVTAICHV-AG-FLVTAV 344 (638)
Q Consensus 277 ~~ivVGT~~~~~ed~~~~GrI~vf~i~~vvpe~g~~~t~~kLkl~~~~~----------~~G~V~al~~~-~g-~Ll~av 344 (638)
.+++.|+ ..|.|.+|++.. ++.. ...++.+.... ..++|++++-- +| +|+++.
T Consensus 240 ~~l~s~~---------~dg~i~iwd~~~-----~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~ 304 (447)
T 3dw8_B 240 NTFVYSS---------SKGTIRLCDMRA-----SALC-DRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRD 304 (447)
T ss_dssp TEEEEEE---------TTSCEEEEETTT-----CSSS-CTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEE
T ss_pred cEEEEEe---------CCCeEEEEECcC-----Cccc-cceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEee
Confidence 7888888 678999998743 1100 00122221110 11388888632 34 566666
Q ss_pred cCEEEEEEeeC-CceeeeEEeecc----------------eeEEEEeeecCEEEEeeccCcEEEEEEe
Q psy92 345 GQKIYIWQLKD-NDLTGIAFIDTE----------------VYIASMVSVKNLILVGDYARSIALLRYQ 395 (638)
Q Consensus 345 g~~l~v~~l~~-~~L~~~a~~d~~----------------~~i~~i~~~~~~IlvgD~~~Sv~ll~~~ 395 (638)
...|++|++.. .+....-..... .+..+....+.+|+.|..-..|.++..+
T Consensus 305 ~~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~ 372 (447)
T 3dw8_B 305 YLSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRN 372 (447)
T ss_dssp SSEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETT
T ss_pred CCeEEEEeCCCCccccceeeccccccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcC
Confidence 68999999974 443221111110 0112333446788888887777776543
No 127
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=91.78 E-value=11 Score=37.20 Aligned_cols=193 Identities=13% Similarity=0.070 Sum_probs=104.3
Q ss_pred EEEEEcC--CeEEEEEeCCCCCCCCCceeEEEeCCCcccE-EEEecCCCEEEEEEeeecCCCcccccCCccccccCCCCC
Q psy92 145 FLYFNAK--SELRISVLPTHLSYDAPWPVRKVPLKCTPHF-LAYHLETKTYCIVTSTAEPSTDYYKFNGEDKELVTDPRD 221 (638)
Q Consensus 145 fl~~~~~--~~L~I~~l~~~~~~~~~~~~r~ipL~~tp~r-i~y~~~~~~~~V~~s~~~~~~~~~~~~~e~~e~~~~~~~ 221 (638)
++|++.. +.+.+..+... ....+.++.+..|.. ++++|..+.++ +. ...
T Consensus 53 ~l~~~~~~~~~i~~~d~~~~-----~~~~~~~~~~~~~~~~~~~s~dg~~l~-~~-~~~--------------------- 104 (331)
T 3u4y_A 53 NVVVTSDFCQTLVQIETQLE-----PPKVVAIQEGQSSMADVDITPDDQFAV-TV-TGL--------------------- 104 (331)
T ss_dssp EEEEEESTTCEEEEEECSSS-----SCEEEEEEECSSCCCCEEECTTSSEEE-EC-CCS---------------------
T ss_pred EEEEEeCCCCeEEEEECCCC-----ceeEEecccCCCCccceEECCCCCEEE-Ee-cCC---------------------
Confidence 5666543 45555544431 234788888999999 99999888766 22 100
Q ss_pred CCCCCCcccccEEEEEeCCCceeecceeecCCCceeEeEEEEEEeeccCccCCcccEEEEeecccCCCCccccee-EEEE
Q psy92 222 SRFIPPLVSQFHVSLFSPFSWEEIPQTNFPLHEWEHVLCLKNVSMEYEGTLSGLRGYIALGTNYNYSEDVTCRGR-ILLF 300 (638)
Q Consensus 222 ~~~~~p~~~~~~i~lid~~t~~~i~~~~~~l~~~E~v~si~~v~l~~~~~~~~~~~~ivVGT~~~~~ed~~~~Gr-I~vf 300 (638)
.....|.++|..+.+.+. .+.... .+.+ +.+... ..+++++.. ..+. |.+|
T Consensus 105 -------~~~~~i~v~d~~~~~~~~--~~~~~~--~~~~---~~~spd------g~~l~~~~~--------~~~~~i~~~ 156 (331)
T 3u4y_A 105 -------NHPFNMQSYSFLKNKFIS--TIPIPY--DAVG---IAISPN------GNGLILIDR--------SSANTVRRF 156 (331)
T ss_dssp -------SSSCEEEEEETTTTEEEE--EEECCT--TEEE---EEECTT------SSCEEEEEE--------TTTTEEEEE
T ss_pred -------CCcccEEEEECCCCCeEE--EEECCC--Cccc---eEECCC------CCEEEEEec--------CCCceEEEE
Confidence 011368888888777664 344332 2333 334322 133444331 2356 8899
Q ss_pred EEEEeecCCCCccccCceEEE--EEEeeCCceEEEc-cccC-eeEEEe--cCEEEEEEeeCCce-eeeEEeecceeEEEE
Q psy92 301 DIIEVVPEPGQPLTKNKIKMI--YAKEQKGPVTAIC-HVAG-FLVTAV--GQKIYIWQLKDNDL-TGIAFIDTEVYIASM 373 (638)
Q Consensus 301 ~i~~vvpe~g~~~t~~kLkl~--~~~~~~G~V~al~-~~~g-~Ll~av--g~~l~v~~l~~~~L-~~~a~~d~~~~i~~i 373 (638)
++.. + .++... ........+.+++ .-+| +|+++. +.+|.+|++...++ ..+..+.....+..+
T Consensus 157 ~~~~-----~-----g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~ 226 (331)
T 3u4y_A 157 KIDA-----D-----GVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGTNNLPGTI 226 (331)
T ss_dssp EECT-----T-----CCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEECSSCCCCE
T ss_pred EECC-----C-----CcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccCCCCCceE
Confidence 8752 1 112111 1112234455554 2245 466654 46899999987665 224444444444454
Q ss_pred ee--ecCEEEEeeccCcEEEEEEeccCCeEEEE
Q psy92 374 VS--VKNLILVGDYARSIALLRYQPEYRTLSLV 404 (638)
Q Consensus 374 ~~--~~~~IlvgD~~~Sv~ll~~~~~~~~l~~~ 404 (638)
.. .+.++++++...+- +..|+.+..++..+
T Consensus 227 ~~spdg~~l~v~~~~~~~-i~~~d~~~~~~~~~ 258 (331)
T 3u4y_A 227 VVSRDGSTVYVLTESTVD-VFNFNQLSGTLSFV 258 (331)
T ss_dssp EECTTSSEEEEECSSEEE-EEEEETTTTEEEEE
T ss_pred EECCCCCEEEEEEcCCCE-EEEEECCCCceeee
Confidence 44 36778887663322 44467666666443
No 128
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=91.68 E-value=19 Score=39.74 Aligned_cols=154 Identities=12% Similarity=0.130 Sum_probs=88.3
Q ss_pred eCCceEEEcc-ccCeeEEEe--cCEEEEEEeeCCceeeeEEeecceeEEEEee--ecCEEEEeeccCcEEEEEEeccCCe
Q psy92 326 QKGPVTAICH-VAGFLVTAV--GQKIYIWQLKDNDLTGIAFIDTEVYIASMVS--VKNLILVGDYARSIALLRYQPEYRT 400 (638)
Q Consensus 326 ~~G~V~al~~-~~g~Ll~av--g~~l~v~~l~~~~L~~~a~~d~~~~i~~i~~--~~~~IlvgD~~~Sv~ll~~~~~~~~ 400 (638)
....|++++- -+|+++++. ..+|++|++..+++...........|+++.. .+.+++.|+.-+.+.++.... ..+
T Consensus 447 ~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~~~~~~~h~~~v~~v~fspdg~~las~s~d~~v~~w~~~~-~~~ 525 (611)
T 1nr0_A 447 ISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVAN-NFE 525 (611)
T ss_dssp CSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGG-TTE
T ss_pred cCCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCceeeeeccCCCCceEEEEECCCCCEEEEEcCCCCEEEEEcCC-CCc
Confidence 3456666652 245544443 3489999998766543333333445666664 467999999888888765432 133
Q ss_pred EEEE-eccCCCcceeeeecccCCCCCcccccccceeeeeeccccccccccccCCcccccccCCCceeEEEEeCCCcEEEE
Q psy92 401 LSLV-ARDYKPTQPNSKGYYAGNPSRGIIDGSLVWKFLQLSLGERLEICKKIGSKHNDILDEFSSMGFMISDKDKNVVLF 479 (638)
Q Consensus 401 l~~~-arD~~~~~v~~~~~l~~~~~~~~vd~~~~~~~~~~~~gd~~~~~~r~~~~~~~~~~~~~~l~~l~aD~~~nl~v~ 479 (638)
+... -......+|+++.|- .| +. .++.+..++.+.++
T Consensus 526 ~~~~~~~~~H~~~V~~v~fs--------pd--------------------------------g~--~lasgs~D~~v~lW 563 (611)
T 1nr0_A 526 LAHTNSWTFHTAKVACVSWS--------PD--------------------------------NV--RLATGSLDNSVIVW 563 (611)
T ss_dssp ESCCCCCCCCSSCEEEEEEC--------TT--------------------------------SS--EEEEEETTSCEEEE
T ss_pred eeeeeeeeecccceeEEEEC--------CC--------------------------------CC--EEEEEECCCcEEEE
Confidence 3211 011245678888885 34 33 47778899999999
Q ss_pred EeCCCCcCCCCCceEEEEeeeecCcceeeEEEEeccCCCCCCCCCCCCceEEEEEeCCCcEEE
Q psy92 480 MYQPEARESNGGHRLIKKTDFHLGQHVNTFFKIRCKPSSISDAPGARSRFLTWYASLDGALGF 542 (638)
Q Consensus 480 ~~~~~~~~s~~~~~L~~~~~f~lg~~v~~~~~~~~~~~~~~~~~~~~~~~~il~~t~~GsIg~ 542 (638)
..+... ..+.....-|-...|+++.-.+ .+ . ++.++.||.|-.
T Consensus 564 ~~~~~~------~~~~~~~~~h~~~~v~~v~fs~------------d~-~-l~s~~~D~~i~l 606 (611)
T 1nr0_A 564 NMNKPS------DHPIIIKGAHAMSSVNSVIWLN------------ET-T-IVSAGQDSNIKF 606 (611)
T ss_dssp ETTCTT------SCCEEETTSSTTSCEEEEEEEE------------TT-E-EEEEETTSCEEE
T ss_pred ECCCcc------cccchhhccCcccCeeEEEEcC------------CC-E-EEEecCCCCEEE
Confidence 875421 1111222223234565543222 12 3 888889998864
No 129
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=91.57 E-value=11 Score=36.70 Aligned_cols=143 Identities=13% Similarity=0.103 Sum_probs=78.2
Q ss_pred CCcEEEEEcCCeEEEEEeCCCCCCCCCceeEEEeCCC---cccEEEEecCCCEEEEEEeeecCCCcccccCCccccccCC
Q psy92 142 PRGFLYFNAKSELRISVLPTHLSYDAPWPVRKVPLKC---TPHFLAYHLETKTYCIVTSTAEPSTDYYKFNGEDKELVTD 218 (638)
Q Consensus 142 ~~gfl~~~~~~~L~I~~l~~~~~~~~~~~~r~ipL~~---tp~ri~y~~~~~~~~V~~s~~~~~~~~~~~~~e~~e~~~~ 218 (638)
++++|++..+++++|-.+.+ .-..+.+.+.. ....++++|..+.++.+..
T Consensus 35 ~~~~lAvg~D~tV~iWd~~t------g~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~--------------------- 87 (318)
T 4ggc_A 35 SGNVLAVALDNSVYLWSASS------GDILQLLQMEQPGEYISSVAWIKEGNYLAVGTS--------------------- 87 (318)
T ss_dssp TTSEEEEEETTEEEEEETTT------CCEEEEEECCSTTCCEEEEEECTTSSEEEEEET---------------------
T ss_pred CCCEEEEEeCCEEEEEECCC------CCEEEEEEecCCCCeEEEEEECCCCCEEEEEEC---------------------
Confidence 34577777788888877665 23445555543 3678889988776654331
Q ss_pred CCCCCCCCCcccccEEEEEeCCCceeecceeecCCCceeEeEEEEEEeeccCccCCcccEEEEeecccCCCCcccceeEE
Q psy92 219 PRDSRFIPPLVSQFHVSLFSPFSWEEIPQTNFPLHEWEHVLCLKNVSMEYEGTLSGLRGYIALGTNYNYSEDVTCRGRIL 298 (638)
Q Consensus 219 ~~~~~~~~p~~~~~~i~lid~~t~~~i~~~~~~l~~~E~v~si~~v~l~~~~~~~~~~~~ivVGT~~~~~ed~~~~GrI~ 298 (638)
...+++.+..+.+.+. .+.-... .+.++ .. ...+++.|. ..|.+.
T Consensus 88 ------------Dg~v~iw~~~~~~~~~--~~~~h~~-~~~~~---~~--------~~~~l~s~~---------~~~~~~ 132 (318)
T 4ggc_A 88 ------------SAEVQLWDVQQQKRLR--NMTSHSA-RVGSL---SW--------NSYILSSGS---------RSGHIH 132 (318)
T ss_dssp ------------TSEEEEEETTTTEEEE--EEECCSS-CEEEE---EE--------ETTEEEEEE---------TTSEEE
T ss_pred ------------CCcEEEeecCCceeEE--EecCccc-eEEEe---ec--------CCCEEEEEe---------cCCceE
Confidence 1246777766666554 3332222 22222 22 135677776 456666
Q ss_pred EEEEEEeecCCCCccccCceEEEEEEeeCCceEEEc-cccCeeEEEe--cCEEEEEEeeCCc
Q psy92 299 LFDIIEVVPEPGQPLTKNKIKMIYAKEQKGPVTAIC-HVAGFLVTAV--GQKIYIWQLKDND 357 (638)
Q Consensus 299 vf~i~~vvpe~g~~~t~~kLkl~~~~~~~G~V~al~-~~~g~Ll~av--g~~l~v~~l~~~~ 357 (638)
++.... ....+.......+.+.++. ...|.++++. ...|++|++...+
T Consensus 133 ~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~ 183 (318)
T 4ggc_A 133 HHDVRV-----------AEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGE 183 (318)
T ss_dssp EEETTS-----------SSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBT
T ss_pred eeecCC-----------CceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCc
Confidence 665321 1112222233456666665 3344444443 3479999997543
No 130
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=91.11 E-value=15 Score=37.59 Aligned_cols=181 Identities=15% Similarity=0.186 Sum_probs=98.6
Q ss_pred EEEEEeCCCceeecceeecCCCceeEeEEEEEEeeccCccCCcccEEEEeecccCCCCcccceeEEEEEEEEeecCCCCc
Q psy92 233 HVSLFSPFSWEEIPQTNFPLHEWEHVLCLKNVSMEYEGTLSGLRGYIALGTNYNYSEDVTCRGRILLFDIIEVVPEPGQP 312 (638)
Q Consensus 233 ~i~lid~~t~~~i~~~~~~l~~~E~v~si~~v~l~~~~~~~~~~~~ivVGT~~~~~ed~~~~GrI~vf~i~~vvpe~g~~ 312 (638)
.|++.|..+.+.+. .+..... .+.++ .+.. ...+++.|. ..|.+.+|++.......+.
T Consensus 89 ~v~iWd~~~~~~~~--~~~~h~~-~v~~~---~~s~------~g~~las~~---------~d~~v~iw~~~~~~~~~~~- 146 (380)
T 3iz6_a 89 RLIVWNALTSQKTH--AIKLHCP-WVMEC---AFAP------NGQSVACGG---------LDSACSIFNLSSQADRDGN- 146 (380)
T ss_dssp EEEEEETTTTEEEE--EEECCCT-TCCCC---EECT------TSSEEEECC---------SSSCCEEEECCCCSSCCCS-
T ss_pred eEEEEECCCCccce--EEecCCC-CEEEE---EECC------CCCEEEEee---------CCCcEEEEECCCCccccCC-
Confidence 47777766665543 3433322 23333 3332 247788876 5688899987542111111
Q ss_pred cccCceEEEEEEeeCCceEEEcccc--C-eeEEEec-CEEEEEEeeCCceeeeEEe----ecceeEEEEee---ecCEEE
Q psy92 313 LTKNKIKMIYAKEQKGPVTAICHVA--G-FLVTAVG-QKIYIWQLKDNDLTGIAFI----DTEVYIASMVS---VKNLIL 381 (638)
Q Consensus 313 ~t~~kLkl~~~~~~~G~V~al~~~~--g-~Ll~avg-~~l~v~~l~~~~L~~~a~~----d~~~~i~~i~~---~~~~Il 381 (638)
..+.. .-...++.|.++.-.. + +|+.|.+ .+|++|++...+....-.. .....+.++.. .+++++
T Consensus 147 ---~~~~~-~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~ 222 (380)
T 3iz6_a 147 ---MPVSR-VLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFI 222 (380)
T ss_dssp ---STTCC-BCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEE
T ss_pred ---cccee-eccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEE
Confidence 11100 0123467777766443 3 4655543 5899999986654321100 11233555543 457899
Q ss_pred EeeccCcEEEEEEeccCCeEEEEeccCCCcceeeeecccCCCCCcccccccceeeeeeccccccccccccCCcccccccC
Q psy92 382 VGDYARSIALLRYQPEYRTLSLVARDYKPTQPNSKGYYAGNPSRGIIDGSLVWKFLQLSLGERLEICKKIGSKHNDILDE 461 (638)
Q Consensus 382 vgD~~~Sv~ll~~~~~~~~l~~~arD~~~~~v~~~~~l~~~~~~~~vd~~~~~~~~~~~~gd~~~~~~r~~~~~~~~~~~ 461 (638)
.|..-..|.+...+.....+..+.. ....|+++.|- .|
T Consensus 223 sgs~D~~v~~wd~~~~~~~~~~~~~--h~~~v~~v~~~--------p~-------------------------------- 260 (380)
T 3iz6_a 223 SGSCDTTVRLWDLRITSRAVRTYHG--HEGDINSVKFF--------PD-------------------------------- 260 (380)
T ss_dssp EEETTSCEEEEETTTTCCCCEEECC--CSSCCCEEEEC--------TT--------------------------------
T ss_pred EEECCCeEEEEECCCCCcceEEECC--cCCCeEEEEEe--------cC--------------------------------
Confidence 9988888888665432222222221 23346777674 33
Q ss_pred CCceeEEEEeCCCcEEEEEeCC
Q psy92 462 FSSMGFMISDKDKNVVLFMYQP 483 (638)
Q Consensus 462 ~~~l~~l~aD~~~nl~v~~~~~ 483 (638)
+. .++.+..++.+.++....
T Consensus 261 ~~--~l~s~s~D~~i~lwd~~~ 280 (380)
T 3iz6_a 261 GQ--RFGTGSDDGTCRLFDMRT 280 (380)
T ss_dssp SS--EEEEECSSSCEEEEETTT
T ss_pred CC--eEEEEcCCCeEEEEECCC
Confidence 33 477888899999987653
No 131
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=90.27 E-value=16 Score=36.50 Aligned_cols=163 Identities=9% Similarity=0.003 Sum_probs=94.8
Q ss_pred eeEEEeCCCc--ccEEEEecCCCEEEEEEeeecCCCcccccCCccccccCCCCCCCCCCCcccccEEEEEeCCCceeecc
Q psy92 170 PVRKVPLKCT--PHFLAYHLETKTYCIVTSTAEPSTDYYKFNGEDKELVTDPRDSRFIPPLVSQFHVSLFSPFSWEEIPQ 247 (638)
Q Consensus 170 ~~r~ipL~~t--p~ri~y~~~~~~~~V~~s~~~~~~~~~~~~~e~~e~~~~~~~~~~~~p~~~~~~i~lid~~t~~~i~~ 247 (638)
.++++|++.. |+-++|++. +.+.+.+.. ...+.|..+|+.+.+++.
T Consensus 11 vv~~~p~~~~~f~~Gl~~~~d-g~Lyvstg~------------------------------~~~s~v~~iD~~tg~v~~- 58 (266)
T 2iwa_A 11 VLNEFPHDPYAFTQGLVYAEN-DTLFESTGL------------------------------YGRSSVRQVALQTGKVEN- 58 (266)
T ss_dssp EEEEEECCTTCCEEEEEECST-TEEEEEECS------------------------------TTTCEEEEEETTTCCEEE-
T ss_pred EEEEEECCCCCCcccEEEeCC-CeEEEECCC------------------------------CCCCEEEEEECCCCCEEE-
Confidence 5788999865 689999987 444443321 123679999999999886
Q ss_pred eeecCCCceeEeEEEEEEeeccCccCCcccEEEEeecccCCCCcccceeEEEEEEEEeecCCCCccccCceEEEEEEeeC
Q psy92 248 TNFPLHEWEHVLCLKNVSMEYEGTLSGLRGYIALGTNYNYSEDVTCRGRILLFDIIEVVPEPGQPLTKNKIKMIYAKEQK 327 (638)
Q Consensus 248 ~~~~l~~~E~v~si~~v~l~~~~~~~~~~~~ivVGT~~~~~ed~~~~GrI~vf~i~~vvpe~g~~~t~~kLkl~~~~~~~ 327 (638)
.+.+........+. +. + ..+.+.| ...|++.+++.. .++++.+..+.
T Consensus 59 -~i~l~~~~fgeGi~---~~--g------~~lyv~t--------~~~~~v~viD~~-------------t~~v~~~i~~g 105 (266)
T 2iwa_A 59 -IHKMDDSYFGEGLT---LL--N------EKLYQVV--------WLKNIGFIYDRR-------------TLSNIKNFTHQ 105 (266)
T ss_dssp -EEECCTTCCEEEEE---EE--T------TEEEEEE--------TTCSEEEEEETT-------------TTEEEEEEECC
T ss_pred -EEecCCCcceEEEE---Ee--C------CEEEEEE--------ecCCEEEEEECC-------------CCcEEEEEECC
Confidence 66666544443322 21 1 2344454 256788887642 34555555444
Q ss_pred -CceEEEccccCeeEEEecC-EEEEEEeeCCceeeeEEeecc------eeEEEEeeecCEEEEeeccCcEEEEEEeccCC
Q psy92 328 -GPVTAICHVAGFLVTAVGQ-KIYIWQLKDNDLTGIAFIDTE------VYIASMVSVKNLILVGDYARSIALLRYQPEYR 399 (638)
Q Consensus 328 -G~V~al~~~~g~Ll~avg~-~l~v~~l~~~~L~~~a~~d~~------~~i~~i~~~~~~IlvgD~~~Sv~ll~~~~~~~ 399 (638)
+.-..|+.-+++|+++-|+ +|.+++....+.. +.+... ..+..+...++.+++...... .+...+++..
T Consensus 106 ~~~g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~--~~I~Vg~~~~p~~~~nele~~dg~lyvn~~~~~-~V~vID~~tg 182 (266)
T 2iwa_A 106 MKDGWGLATDGKILYGSDGTSILYEIDPHTFKLI--KKHNVKYNGHRVIRLNELEYINGEVWANIWQTD-CIARISAKDG 182 (266)
T ss_dssp SSSCCEEEECSSSEEEECSSSEEEEECTTTCCEE--EEEECEETTEECCCEEEEEEETTEEEEEETTSS-EEEEEETTTC
T ss_pred CCCeEEEEECCCEEEEECCCCeEEEEECCCCcEE--EEEEECCCCcccccceeEEEECCEEEEecCCCC-eEEEEECCCC
Confidence 5556677767788888764 5666665543322 222221 124445555677777664433 4555565544
Q ss_pred e
Q psy92 400 T 400 (638)
Q Consensus 400 ~ 400 (638)
+
T Consensus 183 ~ 183 (266)
T 2iwa_A 183 T 183 (266)
T ss_dssp C
T ss_pred c
Confidence 3
No 132
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=89.93 E-value=15 Score=35.78 Aligned_cols=49 Identities=22% Similarity=0.182 Sum_probs=32.6
Q ss_pred CCc-EEEEEc--CCeEEEEEeCCCCCCCCCceeEEEeCCC------cccEEEEecCCCEEEEEE
Q psy92 142 PRG-FLYFNA--KSELRISVLPTHLSYDAPWPVRKVPLKC------TPHFLAYHLETKTYCIVT 196 (638)
Q Consensus 142 ~~g-fl~~~~--~~~L~I~~l~~~~~~~~~~~~r~ipL~~------tp~ri~y~~~~~~~~V~~ 196 (638)
|+| .++++. ++.+.+..+.+ .-..++++++. .|+.++++|..+.++++.
T Consensus 43 ~dg~~l~v~~~~~~~v~~~d~~~------~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~ 100 (337)
T 1pby_B 43 PGGRIAYATVNKSESLVKIDLVT------GETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYE 100 (337)
T ss_dssp TTSSEEEEEETTTTEEEEEETTT------CCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEE
T ss_pred CCCCEEEEEeCCCCeEEEEECCC------CCeEeeEEcCCcccccccccceEECCCCCEEEEEe
Confidence 444 565543 34666655443 34567788876 899999999988776654
No 133
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=89.36 E-value=19 Score=36.10 Aligned_cols=116 Identities=15% Similarity=0.198 Sum_probs=73.6
Q ss_pred cceeEEEEEEEEeecCCCCccccCceEEEEEEeeC----CceEEEc-cccCe-eEEEe-c--CEEEEEEee--CCceeee
Q psy92 293 CRGRILLFDIIEVVPEPGQPLTKNKIKMIYAKEQK----GPVTAIC-HVAGF-LVTAV-G--QKIYIWQLK--DNDLTGI 361 (638)
Q Consensus 293 ~~GrI~vf~i~~vvpe~g~~~t~~kLkl~~~~~~~----G~V~al~-~~~g~-Ll~av-g--~~l~v~~l~--~~~L~~~ 361 (638)
..|+|.+|++.. .+++.+...... ..+.+++ .-+|+ |+++. + ..|.+|++. ++++..+
T Consensus 231 ~~~~v~v~~~~~-----------g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~ 299 (361)
T 3scy_A 231 IGGTVIAFRYAD-----------GMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKV 299 (361)
T ss_dssp TTCEEEEEEEET-----------TEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEE
T ss_pred CCCeEEEEEecC-----------CceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEe
Confidence 467899999862 244444433221 1234543 23454 54543 3 589999996 4567666
Q ss_pred EEeecceeEEEEee--ecCEEEEeec-cCcEEEEEEeccCCeEEEEeccCCCcceeeeecc
Q psy92 362 AFIDTEVYIASMVS--VKNLILVGDY-ARSIALLRYQPEYRTLSLVARDYKPTQPNSKGYY 419 (638)
Q Consensus 362 a~~d~~~~i~~i~~--~~~~IlvgD~-~~Sv~ll~~~~~~~~l~~~arD~~~~~v~~~~~l 419 (638)
..+.....+..+.. .+.++++++. -..+.+++++.+..++..+.....--.++|+.|+
T Consensus 300 ~~~~~g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~~~~p~~v~~~ 360 (361)
T 3scy_A 300 GYQLTGIHPRNFIITPNGKYLLVACRDTNVIQIFERDQATGLLTDIKKDIKVDKPVCLKFV 360 (361)
T ss_dssp EEEECSSCCCEEEECTTSCEEEEEETTTTEEEEEEECTTTCCEEECSCCEECSSEEEEEEE
T ss_pred eEecCCCCCceEEECCCCCEEEEEECCCCCEEEEEEECCCCcEeecceeeeCCCCeEEEEc
Confidence 65554434444444 4678999984 4688999999888888888766554567787774
No 134
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=89.03 E-value=18 Score=35.42 Aligned_cols=147 Identities=11% Similarity=0.152 Sum_probs=86.0
Q ss_pred ccEEEEeecccCCCCcccceeEEEEEEEEeecCCCCccccCceEEEEEEeeCCceEEEcccc--------------C-ee
Q psy92 276 RGYIALGTNYNYSEDVTCRGRILLFDIIEVVPEPGQPLTKNKIKMIYAKEQKGPVTAICHVA--------------G-FL 340 (638)
Q Consensus 276 ~~~ivVGT~~~~~ed~~~~GrI~vf~i~~vvpe~g~~~t~~kLkl~~~~~~~G~V~al~~~~--------------g-~L 340 (638)
..++++|+ ..|.|.+|++.. ++ ...........++|++++--. + +|
T Consensus 113 g~~l~s~s---------~d~~v~~wd~~~-----~~-----~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l 173 (297)
T 2pm7_B 113 GPMLLVAS---------SDGKVSVVEFKE-----NG-----TTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKF 173 (297)
T ss_dssp CSEEEEEE---------TTSEEEEEEBCS-----SS-----CBCCEEEECCSSCEEEEEECCCC------------CCEE
T ss_pred CcEEEEEE---------CCCcEEEEEecC-----CC-----ceeeeeeecccCccceEeecCCcccccccCCCCCCcceE
Confidence 36888887 678999998753 11 111112234567787775221 3 34
Q ss_pred EEE-ecCEEEEEEeeCCc--eeeeEEeec-ceeEEEEeee-----cCEEEEeeccCcEEEEEEeccCC--eEEEEeccCC
Q psy92 341 VTA-VGQKIYIWQLKDND--LTGIAFIDT-EVYIASMVSV-----KNLILVGDYARSIALLRYQPEYR--TLSLVARDYK 409 (638)
Q Consensus 341 l~a-vg~~l~v~~l~~~~--L~~~a~~d~-~~~i~~i~~~-----~~~IlvgD~~~Sv~ll~~~~~~~--~l~~~arD~~ 409 (638)
++| ...+|++|++...+ ......+.. ...|.++... +++++.|..-..|.+...+.... ....+.....
T Consensus 174 ~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~ 253 (297)
T 2pm7_B 174 VTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKF 253 (297)
T ss_dssp EEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCC
T ss_pred EEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCccceeeeecccC
Confidence 444 34589999998543 222233322 3356666644 35788888888888887754322 2223322233
Q ss_pred CcceeeeecccCCCCCcccccccceeeeeeccccccccccccCCcccccccCCCceeEEEEeCCCcEEEEEeCC
Q psy92 410 PTQPNSKGYYAGNPSRGIIDGSLVWKFLQLSLGERLEICKKIGSKHNDILDEFSSMGFMISDKDKNVVLFMYQP 483 (638)
Q Consensus 410 ~~~v~~~~~l~~~~~~~~vd~~~~~~~~~~~~gd~~~~~~r~~~~~~~~~~~~~~l~~l~aD~~~nl~v~~~~~ 483 (638)
+.++.++.|- .| ++ .++.+..++.+.+++.+.
T Consensus 254 ~~~v~~~~~s--------~~--------------------------------g~--~las~~~D~~v~lw~~~~ 285 (297)
T 2pm7_B 254 PDVLWRASWS--------LS--------------------------------GN--VLALSGGDNKVTLWKENL 285 (297)
T ss_dssp SSCEEEEEEC--------SS--------------------------------SC--CEEEEETTSCEEEEEECT
T ss_pred CCcEEEEEEC--------CC--------------------------------CC--EEEEEcCCCcEEEEEECC
Confidence 4567777674 33 33 366778899999998754
No 135
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=88.47 E-value=12 Score=36.98 Aligned_cols=80 Identities=18% Similarity=0.212 Sum_probs=52.2
Q ss_pred eeCCceEEEcc-ccCeeEEEecCEEEEEEeeCCceeeeEEeec---ceeEEEEeee-cCEEEEeecc----------CcE
Q psy92 325 EQKGPVTAICH-VAGFLVTAVGQKIYIWQLKDNDLTGIAFIDT---EVYIASMVSV-KNLILVGDYA----------RSI 389 (638)
Q Consensus 325 ~~~G~V~al~~-~~g~Ll~avg~~l~v~~l~~~~L~~~a~~d~---~~~i~~i~~~-~~~IlvgD~~----------~Sv 389 (638)
...+.|.+++. -+|.|+++.+..|++|+++.+++...+.... ...+..+.+. ++.+++|+.. ..-
T Consensus 51 ~~~~~~~~i~~~~dG~l~v~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~ 130 (297)
T 3g4e_A 51 TMDAPVSSVALRQSGGYVATIGTKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQG 130 (297)
T ss_dssp ECSSCEEEEEEBTTSSEEEEETTEEEEEETTTTEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCE
T ss_pred eCCCceEEEEECCCCCEEEEECCeEEEEECCCCcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCc
Confidence 34677888764 3678999999999999998777665543321 2345566554 3568888864 345
Q ss_pred EEEEEeccCCeEEEEe
Q psy92 390 ALLRYQPEYRTLSLVA 405 (638)
Q Consensus 390 ~ll~~~~~~~~l~~~a 405 (638)
.+++++.+ .++..+.
T Consensus 131 ~l~~~d~~-g~~~~~~ 145 (297)
T 3g4e_A 131 ALYSLFPD-HHVKKYF 145 (297)
T ss_dssp EEEEECTT-SCEEEEE
T ss_pred EEEEEECC-CCEEEEe
Confidence 78888765 3343333
No 136
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=87.53 E-value=20 Score=35.12 Aligned_cols=47 Identities=13% Similarity=-0.057 Sum_probs=30.9
Q ss_pred EEEEEc--CCeEEEEEeCCCCCCCCCceeEEEeCCC-------cccEEEEecCCCEEEEEEe
Q psy92 145 FLYFNA--KSELRISVLPTHLSYDAPWPVRKVPLKC-------TPHFLAYHLETKTYCIVTS 197 (638)
Q Consensus 145 fl~~~~--~~~L~I~~l~~~~~~~~~~~~r~ipL~~-------tp~ri~y~~~~~~~~V~~s 197 (638)
.+|++. ++.+.+..+.+ .-..++++++. .|+.++++|..+.++++..
T Consensus 56 ~~~v~~~~~~~i~~~d~~t------~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~ 111 (349)
T 1jmx_B 56 TAYVLNNHYGDIYGIDLDT------CKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVN 111 (349)
T ss_dssp EEEEEETTTTEEEEEETTT------TEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEE
T ss_pred EEEEEeCCCCcEEEEeCCC------CcEEEEEEcccccccccccccceEECCCCCEEEEEcc
Confidence 455543 45666655443 34566777754 3899999999888777654
No 137
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=87.24 E-value=11 Score=41.15 Aligned_cols=109 Identities=12% Similarity=0.113 Sum_probs=57.2
Q ss_pred ccEEEEeecccCCCCcccceeEEEEEEEEeecCCCCccccCceEEEEEEeeCCceEEEccc-cCeeEEEec-CEEEEEEe
Q psy92 276 RGYIALGTNYNYSEDVTCRGRILLFDIIEVVPEPGQPLTKNKIKMIYAKEQKGPVTAICHV-AGFLVTAVG-QKIYIWQL 353 (638)
Q Consensus 276 ~~~ivVGT~~~~~ed~~~~GrI~vf~i~~vvpe~g~~~t~~kLkl~~~~~~~G~V~al~~~-~g~Ll~avg-~~l~v~~l 353 (638)
..+||.|. ..|.|.+|++.......+.+....+.. ..-...+++|++++-- .+.|++|.. .+|++|++
T Consensus 225 ~~~LAs~s---------~DgtvrlWd~~~~~~~~~~~~~~~~p~-~~l~~h~~~v~sv~~s~~~~lasgs~DgtV~lWD~ 294 (524)
T 2j04_B 225 VGCLSFVS---------QEGTINFLEIIDNATDVHVFKMCEKPS-LTLSLADSLITTFDFLSPTTVVCGFKNGFVAEFDL 294 (524)
T ss_dssp SCEEEEEE---------TTSCEEEEECCCCSSSSSEEECCCSCS-EEECCTTTCEEEEEESSSSEEEEEETTSEEEEEET
T ss_pred CceEEEEe---------cCCeEEEEEcCCCccccccceeecCce-EEEEcCCCCEEEEEecCCCeEEEEeCCCEEEEEEC
Confidence 46788776 578999999753100000000000000 0011235889998733 356666644 69999999
Q ss_pred eCCceeeeEEeecceeEEEEee----ec-CEEEEeeccCcEEEEEE
Q psy92 354 KDNDLTGIAFIDTEVYIASMVS----VK-NLILVGDYARSIALLRY 394 (638)
Q Consensus 354 ~~~~L~~~a~~d~~~~i~~i~~----~~-~~IlvgD~~~Sv~ll~~ 394 (638)
.+.+.....+-.-...|.++.. .+ ++++.|-.-+.|-+...
T Consensus 295 ~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~ 340 (524)
T 2j04_B 295 TDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNP 340 (524)
T ss_dssp TBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECG
T ss_pred CCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEEC
Confidence 8543211111112345666631 23 56777777777777544
No 138
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=87.02 E-value=5.8 Score=37.74 Aligned_cols=100 Identities=14% Similarity=0.112 Sum_probs=57.6
Q ss_pred cceeEEEEEEEEeecCCCCccccCceEEEEEEeeCCceEEEc--cccCeeEEEecCEEEEEEeeC-CceeeeEEeeccee
Q psy92 293 CRGRILLFDIIEVVPEPGQPLTKNKIKMIYAKEQKGPVTAIC--HVAGFLVTAVGQKIYIWQLKD-NDLTGIAFIDTEVY 369 (638)
Q Consensus 293 ~~GrI~vf~i~~vvpe~g~~~t~~kLkl~~~~~~~G~V~al~--~~~g~Ll~avg~~l~v~~l~~-~~L~~~a~~d~~~~ 369 (638)
..|.|++|++.. .+.+.+. ...+.|++++ +-+.+|+++...+|++|++.. .+............
T Consensus 20 ~~~~i~~~d~~~-----------~~~~~~~--~~~~~v~~~~~spdg~~l~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~ 86 (297)
T 2ojh_A 20 MRSSIEIFNIRT-----------RKMRVVW--QTPELFEAPNWSPDGKYLLLNSEGLLYRLSLAGDPSPEKVDTGFATIC 86 (297)
T ss_dssp CCEEEEEEETTT-----------TEEEEEE--EESSCCEEEEECTTSSEEEEEETTEEEEEESSSCCSCEECCCTTCCCB
T ss_pred cceeEEEEeCCC-----------Cceeeec--cCCcceEeeEECCCCCEEEEEcCCeEEEEeCCCCCCceEecccccccc
Confidence 578999997531 2344333 3478888875 333467777888999999987 66543321111123
Q ss_pred EEEEe--eecCEEEEeecc--CcEEEEEEeccCCeEEEEe
Q psy92 370 IASMV--SVKNLILVGDYA--RSIALLRYQPEYRTLSLVA 405 (638)
Q Consensus 370 i~~i~--~~~~~IlvgD~~--~Sv~ll~~~~~~~~l~~~a 405 (638)
+.++. ..+.+|+++... ....++.++.+..+...+.
T Consensus 87 ~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~ 126 (297)
T 2ojh_A 87 NNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGTPRLMT 126 (297)
T ss_dssp CSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCCCEECC
T ss_pred ccceEECCCCCEEEEEEeCCCCcceEEEEECCCCceEEee
Confidence 33333 346677777632 3566666665444444433
No 139
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=86.83 E-value=32 Score=35.79 Aligned_cols=89 Identities=7% Similarity=0.031 Sum_probs=49.2
Q ss_pred eCCceEEEcc-ccCe-eEEEecC----EEEEEEeeCCceeeeEEeecceeEEEEe--eecCEEEEeeccCc-EEEEEEec
Q psy92 326 QKGPVTAICH-VAGF-LVTAVGQ----KIYIWQLKDNDLTGIAFIDTEVYIASMV--SVKNLILVGDYARS-IALLRYQP 396 (638)
Q Consensus 326 ~~G~V~al~~-~~g~-Ll~avg~----~l~v~~l~~~~L~~~a~~d~~~~i~~i~--~~~~~IlvgD~~~S-v~ll~~~~ 396 (638)
..+.+++++- -+|+ |+++... +|++|++..+++....+. ..++.++. ..+.+|+++....+ ..+..|+.
T Consensus 265 ~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~~~l~~~--~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~ 342 (415)
T 2hqs_A 265 GRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRITWE--GSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDL 342 (415)
T ss_dssp CSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEECCCS--SSEEEEEEECTTSSEEEEEEECSSCEEEEEEET
T ss_pred CCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCCEEEEecC--CCcccCeEECCCCCEEEEEECcCCceEEEEEEC
Confidence 3466777652 2454 6655532 688888876654433221 23444444 34678887765533 55666776
Q ss_pred cCCeEEEEeccCCCcceeeeecc
Q psy92 397 EYRTLSLVARDYKPTQPNSKGYY 419 (638)
Q Consensus 397 ~~~~l~~~arD~~~~~v~~~~~l 419 (638)
+..+...+.... .+.++.|-
T Consensus 343 ~~~~~~~l~~~~---~~~~~~~s 362 (415)
T 2hqs_A 343 ATGGVQVLSSTF---LDETPSLA 362 (415)
T ss_dssp TTCCEEECCCSS---SCEEEEEC
T ss_pred CCCCEEEecCCC---CcCCeEEc
Confidence 666655544332 55565564
No 140
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=85.72 E-value=23 Score=34.72 Aligned_cols=87 Identities=13% Similarity=0.139 Sum_probs=51.2
Q ss_pred EEccccCeeEEEec-------CEEEEEEeeCCceeeeEEeecceeEEEEeeecCEEE-EeeccC---cEEEEEEeccCCe
Q psy92 332 AICHVAGFLVTAVG-------QKIYIWQLKDNDLTGIAFIDTEVYIASMVSVKNLIL-VGDYAR---SIALLRYQPEYRT 400 (638)
Q Consensus 332 al~~~~g~Ll~avg-------~~l~v~~l~~~~L~~~a~~d~~~~i~~i~~~~~~Il-vgD~~~---Sv~ll~~~~~~~~ 400 (638)
+++.++|+|++.-| +.+.+|++..+++..++.+..+-.-.++.+.++.|+ +|-... .-.+..|+.+.++
T Consensus 154 ~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 233 (301)
T 2vpj_A 154 GLVVASGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVALLNDHIYVVGGFDGTAHLSSVEAYNIRTDS 233 (301)
T ss_dssp EEEEETTEEEEECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTE
T ss_pred eEEEECCEEEEECCCCCCcccceEEEEeCCCCcEEeCCCCCcccccceEEEECCEEEEEeCCCCCcccceEEEEeCCCCc
Confidence 34445777766544 467888888777766554333333344555666554 453321 2345678888888
Q ss_pred EEEEeccCCCcceeeeec
Q psy92 401 LSLVARDYKPTQPNSKGY 418 (638)
Q Consensus 401 l~~~arD~~~~~v~~~~~ 418 (638)
-..++.-+.+|.-.++..
T Consensus 234 W~~~~~~p~~r~~~~~~~ 251 (301)
T 2vpj_A 234 WTTVTSMTTPRCYVGATV 251 (301)
T ss_dssp EEEECCCSSCCBSCEEEE
T ss_pred EEECCCCCCcccceeEEE
Confidence 888876666665444433
No 141
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=85.52 E-value=13 Score=39.42 Aligned_cols=58 Identities=17% Similarity=0.283 Sum_probs=37.8
Q ss_pred ccEEEEeecccCCCCcccceeEEEEEEEEeecCCCCccccCceEEEEEEeeCCceEEEcc-ccC-eeEEEe-cCEEEEEE
Q psy92 276 RGYIALGTNYNYSEDVTCRGRILLFDIIEVVPEPGQPLTKNKIKMIYAKEQKGPVTAICH-VAG-FLVTAV-GQKIYIWQ 352 (638)
Q Consensus 276 ~~~ivVGT~~~~~ed~~~~GrI~vf~i~~vvpe~g~~~t~~kLkl~~~~~~~G~V~al~~-~~g-~Ll~av-g~~l~v~~ 352 (638)
..+++.|+ ..|.|.+|++.. .-.+......++.|++++- -+| +|++|. ..+|++|+
T Consensus 162 ~~~las~s---------~Dg~v~iwD~~~------------~~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd 220 (434)
T 2oit_A 162 PSMVAVCL---------ADGSIAVLQVTE------------TVKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYL 220 (434)
T ss_dssp TTEEEEEE---------TTSCEEEEEESS------------SEEEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred CCEEEEEE---------CCCeEEEEEcCC------------CcceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEc
Confidence 47888887 678999999853 1122223335678999863 235 455443 34899998
Q ss_pred ee
Q psy92 353 LK 354 (638)
Q Consensus 353 l~ 354 (638)
.+
T Consensus 221 ~~ 222 (434)
T 2oit_A 221 PT 222 (434)
T ss_dssp TT
T ss_pred cC
Confidence 87
No 142
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=85.36 E-value=14 Score=38.98 Aligned_cols=60 Identities=18% Similarity=0.108 Sum_probs=41.2
Q ss_pred EEccccCeeEEEecCEEEEEEeeCCc---------eeeeEEeecceeEEEEeeecCEEEEeeccCcEEEEEEe
Q psy92 332 AICHVAGFLVTAVGQKIYIWQLKDND---------LTGIAFIDTEVYIASMVSVKNLILVGDYARSIALLRYQ 395 (638)
Q Consensus 332 al~~~~g~Ll~avg~~l~v~~l~~~~---------L~~~a~~d~~~~i~~i~~~~~~IlvgD~~~Sv~ll~~~ 395 (638)
|+..-.|.+++|-++++++|.+++-+ +.+.....++. ++++...+++++|| ...+ +..|+
T Consensus 44 ais~~~gll~a~~~~~l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~fd~~~L~v~-~~~~--l~v~d 112 (388)
T 1xip_A 44 DISNSKSLFVAASGSKAVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCFHGDQVLVS-TRNA--LYSLD 112 (388)
T ss_dssp EEETTTTEEEEEETTEEEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEEETTEEEEE-ESSE--EEEEE
T ss_pred EEcCCCCEEEEeCCCEEEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEECCCEEEEE-cCCc--EEEEE
Confidence 44567788899999999999876322 44444456777 88888877899998 3334 44454
No 143
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=84.99 E-value=35 Score=34.50 Aligned_cols=98 Identities=11% Similarity=0.213 Sum_probs=53.2
Q ss_pred ceeEEEEEEEEeecCCCCccccCceEEEEEEee---CCceEEEc-cccC-eeEEEe--cCEEEEEEee--CCceee----
Q psy92 294 RGRILLFDIIEVVPEPGQPLTKNKIKMIYAKEQ---KGPVTAIC-HVAG-FLVTAV--GQKIYIWQLK--DNDLTG---- 360 (638)
Q Consensus 294 ~GrI~vf~i~~vvpe~g~~~t~~kLkl~~~~~~---~G~V~al~-~~~g-~Ll~av--g~~l~v~~l~--~~~L~~---- 360 (638)
.++|.+|++.. ..+++.+..... ...+..++ .-+| +|+++. +.++.+|+++ +.++..
T Consensus 166 ~~~v~~~~~~~----------~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~ 235 (365)
T 1jof_A 166 ANKLWTHRKLA----------SGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHS 235 (365)
T ss_dssp TTEEEEEEECT----------TSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEE
T ss_pred CCEEEEEEECC----------CCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccce
Confidence 36899998741 124554443332 23466554 2345 455543 4689999886 344532
Q ss_pred eEEeecc----e-------eEEEEe---eecCEEEEeeccC------cEEEEEEeccCCeEE
Q psy92 361 IAFIDTE----V-------YIASMV---SVKNLILVGDYAR------SIALLRYQPEYRTLS 402 (638)
Q Consensus 361 ~a~~d~~----~-------~i~~i~---~~~~~IlvgD~~~------Sv~ll~~~~~~~~l~ 402 (638)
+..+... . .+..+. -.+.++++++.-. +|.++..++ ..++.
T Consensus 236 ~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~-~g~~~ 296 (365)
T 1jof_A 236 FPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRD-CGSIE 296 (365)
T ss_dssp EESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECT-TSCEE
T ss_pred EEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECC-CCCEE
Confidence 1111111 1 355555 3466888888654 688877754 34444
No 144
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=83.44 E-value=15 Score=41.08 Aligned_cols=56 Identities=9% Similarity=0.095 Sum_probs=36.0
Q ss_pred cceeEEEEEEEEeecCCCCccccCceE-EEEE--EeeCCceEEEccccCeeEEEecCEEEEEEeeCCcee
Q psy92 293 CRGRILLFDIIEVVPEPGQPLTKNKIK-MIYA--KEQKGPVTAICHVAGFLVTAVGQKIYIWQLKDNDLT 359 (638)
Q Consensus 293 ~~GrI~vf~i~~vvpe~g~~~t~~kLk-l~~~--~~~~G~V~al~~~~g~Ll~avg~~l~v~~l~~~~L~ 359 (638)
..+.+++|++.. .+++ ..+. ...+..|.+++-.++.|++|..++|++|++.++++.
T Consensus 200 ~D~tVrlWd~~~-----------~~~~~~~~tL~~~h~~~V~svaFsg~~LASa~~~tIkLWd~~~~~~~ 258 (588)
T 2j04_A 200 SNNSVFSMTVSA-----------SSHQPVSRMIQNASRRKITDLKIVDYKVVLTCPGYVHKIDLKNYSIS 258 (588)
T ss_dssp TTCCEEEECCCS-----------SSSCCCEEEEECCCSSCCCCEEEETTEEEEECSSEEEEEETTTTEEE
T ss_pred CCCeEEEEECCC-----------CccccceeeecccccCcEEEEEEECCEEEEEeCCeEEEEECCCCeEE
Confidence 467889998753 1221 1111 123467777764356788888889999999977763
No 145
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=83.26 E-value=34 Score=32.95 Aligned_cols=146 Identities=12% Similarity=0.134 Sum_probs=80.6
Q ss_pred ccEEEEeecccCCCCcccceeEEEEEEEEeecCCCCccccCceEEEEEEeeCCceEEEcc--ccCeeE-EEecC---EEE
Q psy92 276 RGYIALGTNYNYSEDVTCRGRILLFDIIEVVPEPGQPLTKNKIKMIYAKEQKGPVTAICH--VAGFLV-TAVGQ---KIY 349 (638)
Q Consensus 276 ~~~ivVGT~~~~~ed~~~~GrI~vf~i~~vvpe~g~~~t~~kLkl~~~~~~~G~V~al~~--~~g~Ll-~avg~---~l~ 349 (638)
..+++.|. ..|.|.+|++.. ++. ............++|.++.. .++.++ .+.|. .|+
T Consensus 162 ~~~l~s~~---------~d~~i~iwd~~~-----~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~ 224 (318)
T 4ggc_A 162 GRHLASGG---------NDNLVNVWPSAP-----GEG---GWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIR 224 (318)
T ss_dssp SSEEEEEE---------TTSCEEEEESSC-----BTT---BSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEE
T ss_pred CCEEEEEe---------cCcceeEEECCC-----Ccc---cccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEE
Confidence 46777776 578899998743 211 11112233445788888753 444444 44443 789
Q ss_pred EEEeeCCceeeeEEeecceeEEEEeeecCEEEEee--ccCcEEEEEEeccCCeEEEEeccCCCcceeeeecccCCCCCcc
Q psy92 350 IWQLKDNDLTGIAFIDTEVYIASMVSVKNLILVGD--YARSIALLRYQPEYRTLSLVARDYKPTQPNSKGYYAGNPSRGI 427 (638)
Q Consensus 350 v~~l~~~~L~~~a~~d~~~~i~~i~~~~~~IlvgD--~~~Sv~ll~~~~~~~~l~~~arD~~~~~v~~~~~l~~~~~~~~ 427 (638)
+|+........................++.++++- .-..|.++..+. ...+..+. .....|+++.|-
T Consensus 225 lwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~-~~~~~~l~--gH~~~V~~l~~s-------- 293 (318)
T 4ggc_A 225 IWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPT-MAKVAELK--GHTSRVLSLTMS-------- 293 (318)
T ss_dssp EEETTTCCEEEEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTT-CCEEEEEC--CCSSCEEEEEEC--------
T ss_pred EEecccccccccccceeeeeeeeecccccceEEEEEcCCCEEEEEECCC-CcEEEEEc--CCCCCEEEEEEc--------
Confidence 99987655443332233333333334456666543 445566554322 22222222 134568888774
Q ss_pred cccccceeeeeeccccccccccccCCcccccccCCCceeEEEEeCCCcEEEEEeCC
Q psy92 428 IDGSLVWKFLQLSLGERLEICKKIGSKHNDILDEFSSMGFMISDKDKNVVLFMYQP 483 (638)
Q Consensus 428 vd~~~~~~~~~~~~gd~~~~~~r~~~~~~~~~~~~~~l~~l~aD~~~nl~v~~~~~ 483 (638)
.| +. .++.+..++.|.+++...
T Consensus 294 pd--------------------------------g~--~l~S~s~D~~v~iWd~~~ 315 (318)
T 4ggc_A 294 PD--------------------------------GA--TVASAAADETLRLWRCFE 315 (318)
T ss_dssp TT--------------------------------SS--CEEEEETTTEEEEECCSC
T ss_pred CC--------------------------------CC--EEEEEecCCeEEEEECCC
Confidence 34 33 377788999999987643
No 146
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=83.15 E-value=5.9 Score=43.51 Aligned_cols=120 Identities=16% Similarity=0.161 Sum_probs=65.3
Q ss_pred cEEEEeecccCCCCcccceeEEEEEEEEeecCCCCccccCceEEEEEEeeCCceEEEc-cc--cC-eeEEEec--CEEEE
Q psy92 277 GYIALGTNYNYSEDVTCRGRILLFDIIEVVPEPGQPLTKNKIKMIYAKEQKGPVTAIC-HV--AG-FLVTAVG--QKIYI 350 (638)
Q Consensus 277 ~~ivVGT~~~~~ed~~~~GrI~vf~i~~vvpe~g~~~t~~kLkl~~~~~~~G~V~al~-~~--~g-~Ll~avg--~~l~v 350 (638)
.+|+.|+ ..|.|.+|++... ..+ .. .-....++|++|+ .+ +| .++++.+ .+|++
T Consensus 278 ~~lasgs---------~DgtV~lWD~~~~----~~~-----~~--~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvkl 337 (524)
T 2j04_B 278 TTVVCGF---------KNGFVAEFDLTDP----EVP-----SF--YDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYI 337 (524)
T ss_dssp SEEEEEE---------TTSEEEEEETTBC----SSC-----SE--EEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEE
T ss_pred CeEEEEe---------CCCEEEEEECCCC----CCc-----eE--EeecccccEEEEEEEcCCCCCeEEEEeccCCeEEE
Confidence 4788888 6799999997530 111 11 1124578999994 33 35 6665544 58999
Q ss_pred EEeeCCceeeeEEeecc-eeEEEEeee--cCEEEEeeccCcEEEEEEeccCCeEEEEeccCCCcceeeeecc
Q psy92 351 WQLKDNDLTGIAFIDTE-VYIASMVSV--KNLILVGDYARSIALLRYQPEYRTLSLVARDYKPTQPNSKGYY 419 (638)
Q Consensus 351 ~~l~~~~L~~~a~~d~~-~~i~~i~~~--~~~IlvgD~~~Sv~ll~~~~~~~~l~~~arD~~~~~v~~~~~l 419 (638)
|++.+.+....-.-... ..+.++... +..++.|+.-++|.+...+.. ..+..+.. ...+|+++.|-
T Consensus 338 WD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~-~~~~~l~g--H~~~V~sva~S 406 (524)
T 2j04_B 338 FNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAA-FAVHPLVS--RETTITAIGVS 406 (524)
T ss_dssp ECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCT-TCCEEEEE--CSSCEEEEECC
T ss_pred EECCCCCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECccc-ccceeeec--CCCceEEEEeC
Confidence 99986543221111111 112333333 557788887777777543321 11121222 23457777774
No 147
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=82.57 E-value=23 Score=39.47 Aligned_cols=124 Identities=13% Similarity=0.129 Sum_probs=70.1
Q ss_pred ccEEEEeecccCCCCcccceeEEEEEEEEeecCCCCccccCceEEEEEE-----eeCCceEEEccccCeeEEE-ecCEEE
Q psy92 276 RGYIALGTNYNYSEDVTCRGRILLFDIIEVVPEPGQPLTKNKIKMIYAK-----EQKGPVTAICHVAGFLVTA-VGQKIY 349 (638)
Q Consensus 276 ~~~ivVGT~~~~~ed~~~~GrI~vf~i~~vvpe~g~~~t~~kLkl~~~~-----~~~G~V~al~~~~g~Ll~a-vg~~l~ 349 (638)
..+|++|+ ..|.|.+|++.. ++. .+.++-.+..- ...+.|++++--.+.|+++ .+..++
T Consensus 141 G~~LAsgs---------~DGtVkIWd~~~-----~~l-~~~~~i~l~ti~~~~~gh~~~V~sVawSPdgLaass~D~tVr 205 (588)
T 2j04_A 141 ESSIVVGN---------EDGELQFFSIRK-----NSE-NTPEFYFESSIRLSDAGSKDWVTHIVWYEDVLVAALSNNSVF 205 (588)
T ss_dssp SSCEEEEE---------TTSEEEEEECCC-----CTT-TCCCCEEEEEEECSCTTCCCCEEEEEEETTEEEEEETTCCEE
T ss_pred CCEEEEEc---------CCCEEEEEECCC-----Ccc-ccccceeeeeeecccccccccEEEEEEcCCcEEEEeCCCeEE
Confidence 58999998 789999999753 110 00111122221 1246899997544445444 456899
Q ss_pred EEEeeCCcee-eeEEe-e-cceeEEEEeeecCEEEEeeccCcEEEEEEeccCCeEEEEeccCCCcceeeeec
Q psy92 350 IWQLKDNDLT-GIAFI-D-TEVYIASMVSVKNLILVGDYARSIALLRYQPEYRTLSLVARDYKPTQPNSKGY 418 (638)
Q Consensus 350 v~~l~~~~L~-~~a~~-d-~~~~i~~i~~~~~~IlvgD~~~Sv~ll~~~~~~~~l~~~arD~~~~~v~~~~~ 418 (638)
+|++.++++. ....+ . ....|.++...++.|+.+- .+.|.+. +....++..+-.. ..-.+..+.|
T Consensus 206 lWd~~~~~~~~~~~tL~~~h~~~V~svaFsg~~LASa~-~~tIkLW--d~~~~~~~~~~~g-h~~~V~~va~ 273 (588)
T 2j04_A 206 SMTVSASSHQPVSRMIQNASRRKITDLKIVDYKVVLTC-PGYVHKI--DLKNYSISSLKTG-SLENFHIIPL 273 (588)
T ss_dssp EECCCSSSSCCCEEEEECCCSSCCCCEEEETTEEEEEC-SSEEEEE--ETTTTEEEEEECS-CCSCCCEEEE
T ss_pred EEECCCCccccceeeecccccCcEEEEEEECCEEEEEe-CCeEEEE--ECCCCeEEEEEcC-CCceEEEEEe
Confidence 9999876643 11222 1 2245556665577777664 4666654 4555666333322 3444555555
No 148
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=81.83 E-value=64 Score=35.15 Aligned_cols=194 Identities=10% Similarity=0.069 Sum_probs=107.1
Q ss_pred CCcEEEEEc--CCeEEEEEeCCCCCCCCCceeEEEeCCCcccEEEEecCCCEEEEEEeeecCCCcccccCCccccccCCC
Q psy92 142 PRGFLYFNA--KSELRISVLPTHLSYDAPWPVRKVPLKCTPHFLAYHLETKTYCIVTSTAEPSTDYYKFNGEDKELVTDP 219 (638)
Q Consensus 142 ~~gfl~~~~--~~~L~I~~l~~~~~~~~~~~~r~ipL~~tp~ri~y~~~~~~~~V~~s~~~~~~~~~~~~~e~~e~~~~~ 219 (638)
|++.++++. ++.+.+....+ .-.+++++.+..|+.++++|..+.++++..
T Consensus 147 p~~~~~vs~~~d~~V~v~D~~t------~~~~~~i~~g~~~~~v~~spdg~~l~v~~~---------------------- 198 (543)
T 1nir_A 147 LPNLFSVTLRDAGQIALVDGDS------KKIVKVIDTGYAVHISRMSASGRYLLVIGR---------------------- 198 (543)
T ss_dssp GGGEEEEEEGGGTEEEEEETTT------CCEEEEEECSTTEEEEEECTTSCEEEEEET----------------------
T ss_pred CCCEEEEEEcCCCeEEEEECCC------ceEEEEEecCcccceEEECCCCCEEEEECC----------------------
Confidence 456666653 46666654433 345789999988999999998887765531
Q ss_pred CCCCCCCCcccccEEEEEeC--CCceeecceeecCCCceeEeEEEEEEeeccCccCCcccEEEEeecccCCCCcccceeE
Q psy92 220 RDSRFIPPLVSQFHVSLFSP--FSWEEIPQTNFPLHEWEHVLCLKNVSMEYEGTLSGLRGYIALGTNYNYSEDVTCRGRI 297 (638)
Q Consensus 220 ~~~~~~~p~~~~~~i~lid~--~t~~~i~~~~~~l~~~E~v~si~~v~l~~~~~~~~~~~~ivVGT~~~~~ed~~~~GrI 297 (638)
+ ..|.++|. .+.+.+. .+.. ...+.+ +.|..-.+ -...+++|+.. ..+.|
T Consensus 199 ----------d-~~V~v~D~~~~t~~~~~--~i~~--g~~p~~---va~sp~~~--~dg~~l~v~~~--------~~~~v 250 (543)
T 1nir_A 199 ----------D-ARIDMIDLWAKEPTKVA--EIKI--GIEARS---VESSKFKG--YEDRYTIAGAY--------WPPQF 250 (543)
T ss_dssp ----------T-SEEEEEETTSSSCEEEE--EEEC--CSEEEE---EEECCSTT--CTTTEEEEEEE--------ESSEE
T ss_pred ----------C-CeEEEEECcCCCCcEEE--EEec--CCCcce---EEeCCCcC--CCCCEEEEEEc--------cCCeE
Confidence 0 24777877 6666654 3442 223333 34432000 01356777652 25678
Q ss_pred EEEEEEEeecCCCCccccCceEEEEEEe--e-------CCceEEEc--cccCeeEEEec--CEEEEEEeeCCceeeeEEe
Q psy92 298 LLFDIIEVVPEPGQPLTKNKIKMIYAKE--Q-------KGPVTAIC--HVAGFLVTAVG--QKIYIWQLKDNDLTGIAFI 364 (638)
Q Consensus 298 ~vf~i~~vvpe~g~~~t~~kLkl~~~~~--~-------~G~V~al~--~~~g~Ll~avg--~~l~v~~l~~~~L~~~a~~ 364 (638)
.+|+... ...++.+.... . ...|.++. +.+++++++.. .+|.+|++.+.+...+..+
T Consensus 251 ~v~D~~t----------~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i 320 (543)
T 1nir_A 251 AIMDGET----------LEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSI 320 (543)
T ss_dssp EEEETTT----------CCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEE
T ss_pred EEEeccc----------cccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEe
Confidence 8886321 11222221100 1 11456654 34566777653 4899999886554444444
Q ss_pred ecceeEEEEee--ecCEEEEeecc-CcEEEEEEeccCCeEEE
Q psy92 365 DTEVYIASMVS--VKNLILVGDYA-RSIALLRYQPEYRTLSL 403 (638)
Q Consensus 365 d~~~~i~~i~~--~~~~IlvgD~~-~Sv~ll~~~~~~~~l~~ 403 (638)
....++.++.. .+.+++++... ..|.+ ++....++..
T Consensus 321 ~~~~~~~~~~~spdg~~l~va~~~~~~v~v--~D~~tg~l~~ 360 (543)
T 1nir_A 321 GAAPFLHDGGWDSSHRYFMTAANNSNKVAV--IDSKDRRLSA 360 (543)
T ss_dssp ECCSSCCCEEECTTSCEEEEEEGGGTEEEE--EETTTTEEEE
T ss_pred ccCcCccCceECCCCCEEEEEecCCCeEEE--EECCCCeEEE
Confidence 44444444443 46778877653 45655 6666666544
No 149
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=80.11 E-value=25 Score=36.71 Aligned_cols=109 Identities=10% Similarity=0.038 Sum_probs=59.2
Q ss_pred ceeEEEEEEEEeecCCCCccccCceEEEEEEeeCCceEEEc-cccCe-eEEEec----CEEEEEEeeCCceeeeEEeecc
Q psy92 294 RGRILLFDIIEVVPEPGQPLTKNKIKMIYAKEQKGPVTAIC-HVAGF-LVTAVG----QKIYIWQLKDNDLTGIAFIDTE 367 (638)
Q Consensus 294 ~GrI~vf~i~~vvpe~g~~~t~~kLkl~~~~~~~G~V~al~-~~~g~-Ll~avg----~~l~v~~l~~~~L~~~a~~d~~ 367 (638)
.++|+++++. + .+++.+. ...+.|.+++ .-+|+ |+.+.. ..|++|++..++....... .
T Consensus 158 ~~~i~i~d~~------g-----~~~~~l~--~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~~l~~~--~ 222 (415)
T 2hqs_A 158 PYELRVSDYD------G-----YNQFVVH--RSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASF--P 222 (415)
T ss_dssp CEEEEEEETT------S-----CSCEEEE--EESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEECC--S
T ss_pred cceEEEEcCC------C-----CCCEEEe--CCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEEEeecC--C
Confidence 3899999853 1 2333333 2457788775 22454 544443 3899999987665443322 2
Q ss_pred eeEEEEee--ecCEEE-EeeccCcEEEEEEeccCCeEEEEeccCCCcceeeeecc
Q psy92 368 VYIASMVS--VKNLIL-VGDYARSIALLRYQPEYRTLSLVARDYKPTQPNSKGYY 419 (638)
Q Consensus 368 ~~i~~i~~--~~~~Il-vgD~~~Sv~ll~~~~~~~~l~~~arD~~~~~v~~~~~l 419 (638)
..+.++.. .+.+|+ .+..-....+..|+.+..++..+... ...++++.|-
T Consensus 223 ~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~~~l~~~--~~~~~~~~~s 275 (415)
T 2hqs_A 223 RHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDG--RSNNTEPTWF 275 (415)
T ss_dssp SCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEECCCC--SSCEEEEEEC
T ss_pred CcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCEEeCcCC--CCcccceEEC
Confidence 23444443 466666 44433345566666655555444332 2345565564
No 150
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=78.02 E-value=55 Score=32.13 Aligned_cols=134 Identities=11% Similarity=-0.012 Sum_probs=83.7
Q ss_pred ccEEEEEeCCCceeecceeecCCCceeEeEEEEEEeeccCccCCcccEEEEeecccCCCCcccceeEEEEEEEEeecCCC
Q psy92 231 QFHVSLFSPFSWEEIPQTNFPLHEWEHVLCLKNVSMEYEGTLSGLRGYIALGTNYNYSEDVTCRGRILLFDIIEVVPEPG 310 (638)
Q Consensus 231 ~~~i~lid~~t~~~i~~~~~~l~~~E~v~si~~v~l~~~~~~~~~~~~ivVGT~~~~~ed~~~~GrI~vf~i~~vvpe~g 310 (638)
+++|+.+|+.+.+++. ++.+...-....+. +. ...|.+.| ...|++++|+.
T Consensus 42 ~S~v~~vD~~tgkv~~--~~~l~~~~fgeGi~---~~--------~~~ly~lt--------w~~~~v~v~D~-------- 92 (243)
T 3mbr_X 42 RSSVRKVDLETGRILQ--RAEVPPPYFGAGIV---AW--------RDRLIQLT--------WRNHEGFVYDL-------- 92 (243)
T ss_dssp SCEEEEEETTTCCEEE--EEECCTTCCEEEEE---EE--------TTEEEEEE--------SSSSEEEEEET--------
T ss_pred CceEEEEECCCCCEEE--EEeCCCCcceeEEE---Ee--------CCEEEEEE--------eeCCEEEEEEC--------
Confidence 5789999999999886 66776542222222 11 12233344 25678888874
Q ss_pred CccccCceEEEEEEeeCCceEEEccccCeeEEEecC-EEEEEEeeCCceeeeEEeecc------eeEEEEeeecCEEEEe
Q psy92 311 QPLTKNKIKMIYAKEQKGPVTAICHVAGFLVTAVGQ-KIYIWQLKDNDLTGIAFIDTE------VYIASMVSVKNLILVG 383 (638)
Q Consensus 311 ~~~t~~kLkl~~~~~~~G~V~al~~~~g~Ll~avg~-~l~v~~l~~~~L~~~a~~d~~------~~i~~i~~~~~~Ilvg 383 (638)
..++++.+....+.-.+||.-+++|+++-|+ +|++++....+. ...+... .++..+...+++|++.
T Consensus 93 -----~tl~~~~ti~~~~~Gwglt~dg~~L~vSdgs~~l~~iDp~t~~~--~~~I~V~~~g~~~~~lNeLe~~~G~lyan 165 (243)
T 3mbr_X 93 -----ATLTPRARFRYPGEGWALTSDDSHLYMSDGTAVIRKLDPDTLQQ--VGSIKVTAGGRPLDNLNELEWVNGELLAN 165 (243)
T ss_dssp -----TTTEEEEEEECSSCCCEEEECSSCEEEECSSSEEEEECTTTCCE--EEEEECEETTEECCCEEEEEEETTEEEEE
T ss_pred -----CcCcEEEEEeCCCCceEEeeCCCEEEEECCCCeEEEEeCCCCeE--EEEEEEccCCcccccceeeEEeCCEEEEE
Confidence 3567777767766667888888889999776 666666554332 2333221 2445666778888877
Q ss_pred eccCcEEEEEEeccCCeE
Q psy92 384 DYARSIALLRYQPEYRTL 401 (638)
Q Consensus 384 D~~~Sv~ll~~~~~~~~l 401 (638)
.-... .+++.+++..+.
T Consensus 166 vw~s~-~I~vIDp~tG~V 182 (243)
T 3mbr_X 166 VWLTS-RIARIDPASGKV 182 (243)
T ss_dssp ETTTT-EEEEECTTTCBE
T ss_pred ECCCC-eEEEEECCCCCE
Confidence 75544 566666665544
No 151
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=77.64 E-value=36 Score=33.46 Aligned_cols=107 Identities=21% Similarity=0.261 Sum_probs=61.2
Q ss_pred cEEEEeecccCCCCcccceeEEEEEEEEeecCCCCccccCceEEEEEEeeCCceEEEcc-ccCeeEEEe-cC-----EEE
Q psy92 277 GYIALGTNYNYSEDVTCRGRILLFDIIEVVPEPGQPLTKNKIKMIYAKEQKGPVTAICH-VAGFLVTAV-GQ-----KIY 349 (638)
Q Consensus 277 ~~ivVGT~~~~~ed~~~~GrI~vf~i~~vvpe~g~~~t~~kLkl~~~~~~~G~V~al~~-~~g~Ll~av-g~-----~l~ 349 (638)
.++++++ ..|.|++|+.. ..+++.+. ....+.|++|+. -+|+|+++. +. .|+
T Consensus 57 ~l~~~~~---------~~~~i~~~d~~-----------~~~~~~~~-~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~ 115 (333)
T 2dg1_A 57 QLFLLDV---------FEGNIFKINPE-----------TKEIKRPF-VSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIF 115 (333)
T ss_dssp CEEEEET---------TTCEEEEECTT-----------TCCEEEEE-ECSSSSEEEEEECTTSCEEEEECTTSSSCCEEE
T ss_pred CEEEEEC---------CCCEEEEEeCC-----------CCcEEEEe-eCCCCCcceEEECCCCcEEEEeCCCCCCCceEE
Confidence 4666676 46788887532 12333332 134567888874 367777775 33 788
Q ss_pred EEEeeCCceeeeEE-eecceeEEEEeee-cCEEEEeeccC-----cEEEEEEeccCCeEEEE
Q psy92 350 IWQLKDNDLTGIAF-IDTEVYIASMVSV-KNLILVGDYAR-----SIALLRYQPEYRTLSLV 404 (638)
Q Consensus 350 v~~l~~~~L~~~a~-~d~~~~i~~i~~~-~~~IlvgD~~~-----Sv~ll~~~~~~~~l~~~ 404 (638)
+|+...+++..... ......+..+... ++.+++++... ...+++|+.+..++..+
T Consensus 116 ~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~ 177 (333)
T 2dg1_A 116 AATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPI 177 (333)
T ss_dssp EECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEE
T ss_pred EEeCCCCEEEEEEccCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEe
Confidence 88877665542211 1122345555554 45678887642 46778887765555444
No 152
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=77.12 E-value=39 Score=33.31 Aligned_cols=70 Identities=13% Similarity=0.173 Sum_probs=42.8
Q ss_pred eeCCceEEEc-cccCeeEEEec--CEEEEEEeeCCceeeeEEeec-ceeEEEEeee----cCEEEEeeccCcEEEEEE
Q psy92 325 EQKGPVTAIC-HVAGFLVTAVG--QKIYIWQLKDNDLTGIAFIDT-EVYIASMVSV----KNLILVGDYARSIALLRY 394 (638)
Q Consensus 325 ~~~G~V~al~-~~~g~Ll~avg--~~l~v~~l~~~~L~~~a~~d~-~~~i~~i~~~----~~~IlvgD~~~Sv~ll~~ 394 (638)
..+++|++++ ..+|.+|++.+ .+|++|++..++......+.. ...|.++... +++++.|..-+.|.+...
T Consensus 11 ~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~ 88 (316)
T 3bg1_A 11 SHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWRE 88 (316)
T ss_dssp ---CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECC
T ss_pred cccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEEC
Confidence 4568899886 34565555443 589999998654332333322 3456666642 678888888888877654
No 153
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=77.01 E-value=45 Score=32.65 Aligned_cols=85 Identities=16% Similarity=0.170 Sum_probs=48.4
Q ss_pred EEccccCeeEEEecC--------EEEEEEeeCCceeeeEEeecceeEEEEeeecCEEE-EeeccC-------cEEEEEEe
Q psy92 332 AICHVAGFLVTAVGQ--------KIYIWQLKDNDLTGIAFIDTEVYIASMVSVKNLIL-VGDYAR-------SIALLRYQ 395 (638)
Q Consensus 332 al~~~~g~Ll~avg~--------~l~v~~l~~~~L~~~a~~d~~~~i~~i~~~~~~Il-vgD~~~-------Sv~ll~~~ 395 (638)
+++.++++|++.-|. .+.+|++..+++..++.+..+-.-.++.+.++.|+ +|-... .-.+..|+
T Consensus 96 ~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~yd 175 (306)
T 3ii7_A 96 AACAAEGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVEANGLIYVCGGSLGNNVSGRVLNSCEVYD 175 (306)
T ss_dssp EEEEETTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCEESCTTTCEECCCEEEEE
T ss_pred eEEEECCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEEECCEEEEECCCCCCCCcccccceEEEeC
Confidence 444567777766553 37788887777665554333333334445566554 443211 22356678
Q ss_pred ccCCeEEEEeccCCCcceeee
Q psy92 396 PEYRTLSLVARDYKPTQPNSK 416 (638)
Q Consensus 396 ~~~~~l~~~arD~~~~~v~~~ 416 (638)
.+.++-..++.-..+|.-.++
T Consensus 176 ~~~~~W~~~~~~p~~r~~~~~ 196 (306)
T 3ii7_A 176 PATETWTELCPMIEARKNHGL 196 (306)
T ss_dssp TTTTEEEEECCCSSCCBSCEE
T ss_pred CCCCeEEECCCccchhhcceE
Confidence 888888887755555554443
No 154
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=76.69 E-value=78 Score=33.19 Aligned_cols=92 Identities=14% Similarity=0.108 Sum_probs=52.2
Q ss_pred eeCCceEEEcc-ccCeeEEE---e---cCEEEEEEeeCC-----c----eeeeEEee-cceeEEEEeee---cCEEEEee
Q psy92 325 EQKGPVTAICH-VAGFLVTA---V---GQKIYIWQLKDN-----D----LTGIAFID-TEVYIASMVSV---KNLILVGD 384 (638)
Q Consensus 325 ~~~G~V~al~~-~~g~Ll~a---v---g~~l~v~~l~~~-----~----L~~~a~~d-~~~~i~~i~~~---~~~IlvgD 384 (638)
...++|++++- -+|.++++ . ...|++|++... + +.....+. ....|.++... +++++.|.
T Consensus 90 ~~~~~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s 169 (434)
T 2oit_A 90 PMKFPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCL 169 (434)
T ss_dssp CCSSCEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEE
T ss_pred cCCCcccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEE
Confidence 45788999872 34555552 2 348999998632 1 11122211 13456676653 56888898
Q ss_pred ccCcEEEEEEeccCCeEEEEeccCCCcceeeeecc
Q psy92 385 YARSIALLRYQPEYRTLSLVARDYKPTQPNSKGYY 419 (638)
Q Consensus 385 ~~~Sv~ll~~~~~~~~l~~~arD~~~~~v~~~~~l 419 (638)
.-..|.++..+.. ... .........++++.+-
T Consensus 170 ~Dg~v~iwD~~~~--~~~-~~~~~~~~~v~~v~ws 201 (434)
T 2oit_A 170 ADGSIAVLQVTET--VKV-CATLPSTVAVTSVCWS 201 (434)
T ss_dssp TTSCEEEEEESSS--EEE-EEEECGGGCEEEEEEC
T ss_pred CCCeEEEEEcCCC--cce-eeccCCCCceeEEEEc
Confidence 8888888766543 221 1222233457777664
No 155
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=76.25 E-value=65 Score=32.06 Aligned_cols=104 Identities=6% Similarity=-0.026 Sum_probs=61.4
Q ss_pred ccEEEEeecccCCCCcccceeEEEEEEEEeecCCCCccccCceEEEEEEeeCCceEEEcc-ccCeeEEEecCEEEEEEee
Q psy92 276 RGYIALGTNYNYSEDVTCRGRILLFDIIEVVPEPGQPLTKNKIKMIYAKEQKGPVTAICH-VAGFLVTAVGQKIYIWQLK 354 (638)
Q Consensus 276 ~~~ivVGT~~~~~ed~~~~GrI~vf~i~~vvpe~g~~~t~~kLkl~~~~~~~G~V~al~~-~~g~Ll~avg~~l~v~~l~ 354 (638)
..++++++ ..|+|+.|+.. ..+++.+ ...+.|.++.. -+|.++++....|++|++.
T Consensus 61 ~~l~~~d~---------~~~~i~~~d~~-----------~~~~~~~---~~~~~v~~i~~~~dg~l~v~~~~gl~~~d~~ 117 (326)
T 2ghs_A 61 GTAWWFNI---------LERELHELHLA-----------SGRKTVH---ALPFMGSALAKISDSKQLIASDDGLFLRDTA 117 (326)
T ss_dssp TEEEEEEG---------GGTEEEEEETT-----------TTEEEEE---ECSSCEEEEEEEETTEEEEEETTEEEEEETT
T ss_pred CEEEEEEC---------CCCEEEEEECC-----------CCcEEEE---ECCCcceEEEEeCCCeEEEEECCCEEEEECC
Confidence 46677776 45778777532 1233322 23567888863 3678888888889999887
Q ss_pred CCceeeeEEeec---ceeEEEEeee-cCEEEEeecc-----CcEEEEEEeccCCeEEEE
Q psy92 355 DNDLTGIAFIDT---EVYIASMVSV-KNLILVGDYA-----RSIALLRYQPEYRTLSLV 404 (638)
Q Consensus 355 ~~~L~~~a~~d~---~~~i~~i~~~-~~~IlvgD~~-----~Sv~ll~~~~~~~~l~~~ 404 (638)
++++........ ...+..+.+. ++.+++|+.. ....+++|+ ..++..+
T Consensus 118 ~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~~ 174 (326)
T 2ghs_A 118 TGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTKL 174 (326)
T ss_dssp TCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEEE
T ss_pred CCcEEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEEe
Confidence 777654432211 1345565554 3457788764 235677776 3455444
No 156
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=75.58 E-value=58 Score=31.14 Aligned_cols=69 Identities=7% Similarity=0.092 Sum_probs=39.5
Q ss_pred CceEEEcc-ccCeeEEEe--cC-EEEEEEeeCCceeeeEEeecceeEEEEeee-cCEEEEeeccCcEEEEEEec
Q psy92 328 GPVTAICH-VAGFLVTAV--GQ-KIYIWQLKDNDLTGIAFIDTEVYIASMVSV-KNLILVGDYARSIALLRYQP 396 (638)
Q Consensus 328 G~V~al~~-~~g~Ll~av--g~-~l~v~~l~~~~L~~~a~~d~~~~i~~i~~~-~~~IlvgD~~~Sv~ll~~~~ 396 (638)
..+++|+- -+|+|+++. +. .|.+|+...+.+...........+..+... ++.++|+|.-..|.+++|..
T Consensus 207 ~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~g~l~vs~~~~~v~v~~~~~ 280 (286)
T 1q7f_A 207 NYPIGVGINSNGEILIADNHNNFNLTIFTQDGQLISALESKVKHAQCFDVALMDDGSVVLASKDYRLYIYRYVQ 280 (286)
T ss_dssp CSEEEEEECTTCCEEEEECSSSCEEEEECTTSCEEEEEEESSCCSCEEEEEEETTTEEEEEETTTEEEEEECSC
T ss_pred CCCcEEEECCCCCEEEEeCCCCEEEEEECCCCCEEEEEcccCCCCcceeEEECCCCcEEEECCCCeEEEEEccc
Confidence 35677763 367887775 33 899998643333333221111234445443 35677778767788877643
No 157
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=75.50 E-value=40 Score=38.39 Aligned_cols=72 Identities=19% Similarity=0.308 Sum_probs=46.1
Q ss_pred eEEEccc-cCeeEEEecCEEEEEEeeCCceeeeEEeec-cee-EEEEee-ecCEEEEeeccCcEEEEEEeccCCeEEEE
Q psy92 330 VTAICHV-AGFLVTAVGQKIYIWQLKDNDLTGIAFIDT-EVY-IASMVS-VKNLILVGDYARSIALLRYQPEYRTLSLV 404 (638)
Q Consensus 330 V~al~~~-~g~Ll~avg~~l~v~~l~~~~L~~~a~~d~-~~~-i~~i~~-~~~~IlvgD~~~Sv~ll~~~~~~~~l~~~ 404 (638)
|.+|+.- +|.|.++..+.|+.|+.+++++..... .. ... +.++.. .++.|.||....++ ++|+.+..++..+
T Consensus 133 i~~i~~d~~g~lwi~t~~gl~~~~~~~~~~~~~~~-~~~~~~~i~~i~~d~~g~lwigt~~~Gl--~~~~~~~~~~~~~ 208 (795)
T 4a2l_A 133 VNGIEEISPEQLLISTPEGLIMFDIKESKFIDDSF-STAMHKTIASTLYRQGDQIYIGTSTDGL--YTYSITQKTFEKV 208 (795)
T ss_dssp CCEEEEEETTEEEEEETTEEEEEETTTTEEECSSS-CHHHHTCCEEEEEEETTEEEEEESSSCE--EEEETTTCCEEEC
T ss_pred EEEEEECCCCCEEEEECCceEEEECCCCEEEeccC-CCCCCcceEEEEECCCCCEEEEECCCCE--EEEeCCCCeEEEe
Confidence 7787654 688999998999999876655543211 11 111 555554 36788999776674 5666666666544
No 158
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=75.33 E-value=54 Score=32.16 Aligned_cols=83 Identities=11% Similarity=0.125 Sum_probs=59.1
Q ss_pred ceEEEEEEeeC--CceEEEccccCeeEEEecC----EEEEEEeeCCceeeeEEeecceeEEEEeeecCEEEEeeccCcEE
Q psy92 317 KIKMIYAKEQK--GPVTAICHVAGFLVTAVGQ----KIYIWQLKDNDLTGIAFIDTEVYIASMVSVKNLILVGDYARSIA 390 (638)
Q Consensus 317 kLkl~~~~~~~--G~V~al~~~~g~Ll~avg~----~l~v~~l~~~~L~~~a~~d~~~~i~~i~~~~~~IlvgD~~~Sv~ 390 (638)
..+++.+...+ .-...|.-.++.|+.+.|. +|+.+++...++....-++...+...+...++.|++.+-..+.
T Consensus 8 ~~~v~~~~phd~~~ftqGL~~~~~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~~~ly~ltw~~~~- 86 (243)
T 3mbr_X 8 GYRVVKRYPHDTTAFTEGLFYLRGHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAWRDRLIQLTWRNHE- 86 (243)
T ss_dssp CEEEEEEEECCTTCCEEEEEEETTEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSE-
T ss_pred ceEEEEEcCCCCccccccEEEECCEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEeCCEEEEEEeeCCE-
Confidence 34445444443 3344565456889999887 8999999988877666566677888888899999999877775
Q ss_pred EEEEeccCCe
Q psy92 391 LLRYQPEYRT 400 (638)
Q Consensus 391 ll~~~~~~~~ 400 (638)
++.|+.+..+
T Consensus 87 v~v~D~~tl~ 96 (243)
T 3mbr_X 87 GFVYDLATLT 96 (243)
T ss_dssp EEEEETTTTE
T ss_pred EEEEECCcCc
Confidence 4567765443
No 159
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=74.34 E-value=22 Score=35.07 Aligned_cols=88 Identities=10% Similarity=0.110 Sum_probs=51.7
Q ss_pred EEccccCeeEEEec-------CEEEEEEeeCCceeeeEEeecceeEEEEeeecCEEE-Eeecc---CcEEEEEEeccCCe
Q psy92 332 AICHVAGFLVTAVG-------QKIYIWQLKDNDLTGIAFIDTEVYIASMVSVKNLIL-VGDYA---RSIALLRYQPEYRT 400 (638)
Q Consensus 332 al~~~~g~Ll~avg-------~~l~v~~l~~~~L~~~a~~d~~~~i~~i~~~~~~Il-vgD~~---~Sv~ll~~~~~~~~ 400 (638)
+++.++++|++.-| ..+.+|++..+++..++-+..+-.-.++.+.++.|+ +|-.. ..-.+..|+.+.++
T Consensus 195 ~~~~~~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~yd~~~~~ 274 (306)
T 3ii7_A 195 GLVFVKDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKCAAVGSIVYVLAGFQGVGRLGHILEYNTETDK 274 (306)
T ss_dssp EEEEETTEEEEECCEETTEEBCCEEEEETTTTEEEECCCCSCCBSCCEEEEETTEEEEEECBCSSSBCCEEEEEETTTTE
T ss_pred eEEEECCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCCccceeEEEECCEEEEEeCcCCCeeeeeEEEEcCCCCe
Confidence 44455777666544 357888888777666553333333334455566554 45321 11256778888888
Q ss_pred EEEEeccCCCcceeeeecc
Q psy92 401 LSLVARDYKPTQPNSKGYY 419 (638)
Q Consensus 401 l~~~arD~~~~~v~~~~~l 419 (638)
-..++.-..+|.-.++..+
T Consensus 275 W~~~~~~~~~r~~~~~~~~ 293 (306)
T 3ii7_A 275 WVANSKVRAFPVTSCLICV 293 (306)
T ss_dssp EEEEEEEECCSCTTCEEEE
T ss_pred EEeCCCcccccceeEEEEE
Confidence 8887766666665444443
No 160
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=74.29 E-value=72 Score=31.66 Aligned_cols=165 Identities=12% Similarity=0.083 Sum_probs=96.6
Q ss_pred eeEEEeCCCcc--cEEEEecCCCEEEEEEeeecCCCcccccCCccccccCCCCCCCCCCCcccccEEEEEeCCCceeecc
Q psy92 170 PVRKVPLKCTP--HFLAYHLETKTYCIVTSTAEPSTDYYKFNGEDKELVTDPRDSRFIPPLVSQFHVSLFSPFSWEEIPQ 247 (638)
Q Consensus 170 ~~r~ipL~~tp--~ri~y~~~~~~~~V~~s~~~~~~~~~~~~~e~~e~~~~~~~~~~~~p~~~~~~i~lid~~t~~~i~~ 247 (638)
.++++|-+..+ +-|.|+. +.+.+++.. ..+++|+.+|+.+.+++.
T Consensus 33 vv~~~phd~~~ftqGL~~~~--~~LyestG~------------------------------~g~S~v~~vD~~Tgkv~~- 79 (262)
T 3nol_A 33 IVHSYPHDTKAFTEGFFYRN--GYFYESTGL------------------------------NGRSSIRKVDIESGKTLQ- 79 (262)
T ss_dssp EEEEEECCTTCEEEEEEEET--TEEEEEEEE------------------------------TTEEEEEEECTTTCCEEE-
T ss_pred EEEEecCCCCcccceEEEEC--CEEEEECCC------------------------------CCCceEEEEECCCCcEEE-
Confidence 35677777777 7788873 344444321 134789999999999886
Q ss_pred eeecCCCceeEeEEEEEEeeccCccCCcccEEEEeecccCCCCcccceeEEEEEEEEeecCCCCccccCceEEEEEEeeC
Q psy92 248 TNFPLHEWEHVLCLKNVSMEYEGTLSGLRGYIALGTNYNYSEDVTCRGRILLFDIIEVVPEPGQPLTKNKIKMIYAKEQK 327 (638)
Q Consensus 248 ~~~~l~~~E~v~si~~v~l~~~~~~~~~~~~ivVGT~~~~~ed~~~~GrI~vf~i~~vvpe~g~~~t~~kLkl~~~~~~~ 327 (638)
++.+.+.-....+. +. ...|.+.|- ..+++++|+. ..++++.+....
T Consensus 80 -~~~l~~~~FgeGit---~~--------g~~ly~ltw--------~~~~v~v~D~-------------~t~~~~~ti~~~ 126 (262)
T 3nol_A 80 -QIELGKRYFGEGIS---DW--------KDKIVGLTW--------KNGLGFVWNI-------------RNLRQVRSFNYD 126 (262)
T ss_dssp -EEECCTTCCEEEEE---EE--------TTEEEEEES--------SSSEEEEEET-------------TTCCEEEEEECS
T ss_pred -EEecCCccceeEEE---Ee--------CCEEEEEEe--------eCCEEEEEEC-------------ccCcEEEEEECC
Confidence 66666532222221 11 122333342 4678888874 245566666665
Q ss_pred CceEEEccccCeeEEEecC-EEEEEEeeCCceeeeEEeecc------eeEEEEeeecCEEEEeeccCcEEEEEEeccCCe
Q psy92 328 GPVTAICHVAGFLVTAVGQ-KIYIWQLKDNDLTGIAFIDTE------VYIASMVSVKNLILVGDYARSIALLRYQPEYRT 400 (638)
Q Consensus 328 G~V~al~~~~g~Ll~avg~-~l~v~~l~~~~L~~~a~~d~~------~~i~~i~~~~~~IlvgD~~~Sv~ll~~~~~~~~ 400 (638)
+--.+++.-+++|+++-|+ +|.+++....+. .+.+... ..+..+...++.|++..-... .+++.+++..+
T Consensus 127 ~eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v--~~~I~V~~~g~~~~~lNELe~~~G~lyan~w~~~-~I~vIDp~tG~ 203 (262)
T 3nol_A 127 GEGWGLTHNDQYLIMSDGTPVLRFLDPESLTP--VRTITVTAHGEELPELNELEWVDGEIFANVWQTN-KIVRIDPETGK 203 (262)
T ss_dssp SCCCCEEECSSCEEECCSSSEEEEECTTTCSE--EEEEECEETTEECCCEEEEEEETTEEEEEETTSS-EEEEECTTTCB
T ss_pred CCceEEecCCCEEEEECCCCeEEEEcCCCCeE--EEEEEeccCCccccccceeEEECCEEEEEEccCC-eEEEEECCCCc
Confidence 5446777767788888765 566666554333 2222221 223445566788888776554 56677776655
Q ss_pred EEE
Q psy92 401 LSL 403 (638)
Q Consensus 401 l~~ 403 (638)
...
T Consensus 204 V~~ 206 (262)
T 3nol_A 204 VTG 206 (262)
T ss_dssp EEE
T ss_pred EEE
Confidence 443
No 161
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=73.59 E-value=23 Score=35.13 Aligned_cols=85 Identities=12% Similarity=0.153 Sum_probs=47.4
Q ss_pred EEccccCeeEEEec-------CEEEEEEeeCCceeeeEEeecceeEEEEeeecCEEE-EeeccC---cEEEEEEeccCCe
Q psy92 332 AICHVAGFLVTAVG-------QKIYIWQLKDNDLTGIAFIDTEVYIASMVSVKNLIL-VGDYAR---SIALLRYQPEYRT 400 (638)
Q Consensus 332 al~~~~g~Ll~avg-------~~l~v~~l~~~~L~~~a~~d~~~~i~~i~~~~~~Il-vgD~~~---Sv~ll~~~~~~~~ 400 (638)
+++.++|+|++.-| +.+.+|++..+++..++.+..+-.-.++.+.++.|+ +|-... .-.+..|+.+.++
T Consensus 116 ~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~ 195 (308)
T 1zgk_A 116 GVGVIDGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVLNRLLYAVGGFDGTNRLNSAECYYPERNE 195 (308)
T ss_dssp EEEEETTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCSSCBCCCEEEEETTTTE
T ss_pred EEEEECCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEECCEEEEEeCCCCCCcCceEEEEeCCCCe
Confidence 33445677666544 457788887777665543333333334445566554 443211 2335677777778
Q ss_pred EEEEeccCCCcceeee
Q psy92 401 LSLVARDYKPTQPNSK 416 (638)
Q Consensus 401 l~~~arD~~~~~v~~~ 416 (638)
-..++.-+.+|.-.++
T Consensus 196 W~~~~~~p~~r~~~~~ 211 (308)
T 1zgk_A 196 WRMITAMNTIRSGAGV 211 (308)
T ss_dssp EEECCCCSSCCBSCEE
T ss_pred EeeCCCCCCccccceE
Confidence 7777655555554443
No 162
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=72.71 E-value=62 Score=31.55 Aligned_cols=85 Identities=21% Similarity=0.195 Sum_probs=48.6
Q ss_pred EEccccCeeEEEec---------CEEEEEEeeCCceeeeEEeecceeEEEEeeecCEE-EEeeccC---cEEEEEEeccC
Q psy92 332 AICHVAGFLVTAVG---------QKIYIWQLKDNDLTGIAFIDTEVYIASMVSVKNLI-LVGDYAR---SIALLRYQPEY 398 (638)
Q Consensus 332 al~~~~g~Ll~avg---------~~l~v~~l~~~~L~~~a~~d~~~~i~~i~~~~~~I-lvgD~~~---Sv~ll~~~~~~ 398 (638)
+++.++++|++.-| ..+.+|++..++...++.+..+-.-.++.+.++.| ++|-... .-.+..|+.+.
T Consensus 150 ~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~ 229 (302)
T 2xn4_A 150 GVGVVGGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVGVLNNLLYAVGGHDGPLVRKSVEVYDPTT 229 (302)
T ss_dssp EEEEETTEEEEECCEETTTTEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCBSSSSBCCCEEEEETTT
T ss_pred eEEEECCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCccccccccEEEECCEEEEECCCCCCcccceEEEEeCCC
Confidence 44445677666543 24777888777766655433333333445556655 4553221 22466788888
Q ss_pred CeEEEEeccCCCcceeee
Q psy92 399 RTLSLVARDYKPTQPNSK 416 (638)
Q Consensus 399 ~~l~~~arD~~~~~v~~~ 416 (638)
++-..++.-..+|.-.++
T Consensus 230 ~~W~~~~~~~~~r~~~~~ 247 (302)
T 2xn4_A 230 NAWRQVADMNMCRRNAGV 247 (302)
T ss_dssp TEEEEECCCSSCCBSCEE
T ss_pred CCEeeCCCCCCccccCeE
Confidence 888888766656554333
No 163
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=72.35 E-value=31 Score=33.77 Aligned_cols=85 Identities=8% Similarity=0.159 Sum_probs=49.8
Q ss_pred EEccccCeeEEEec-------CEEEEEEeeCCceeeeEEeecceeEEEEeeecCEE-EEeeccC---cEEEEEEeccCCe
Q psy92 332 AICHVAGFLVTAVG-------QKIYIWQLKDNDLTGIAFIDTEVYIASMVSVKNLI-LVGDYAR---SIALLRYQPEYRT 400 (638)
Q Consensus 332 al~~~~g~Ll~avg-------~~l~v~~l~~~~L~~~a~~d~~~~i~~i~~~~~~I-lvgD~~~---Sv~ll~~~~~~~~ 400 (638)
+++.++++|++.-| +.+.+|++..+++..++.+..+-.-.++.+.++.| ++|-... .-.+..|+.+.++
T Consensus 201 ~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 280 (301)
T 2vpj_A 201 GVALLNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCYVGATVLRGRLYAIAGYDGNSLLSSIECYDPIIDS 280 (301)
T ss_dssp EEEEETTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCBCSSSBEEEEEEEETTTTE
T ss_pred eEEEECCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCCCcccceeEEEECCEEEEEcCcCCCcccccEEEEcCCCCe
Confidence 44456777766654 35788888877776655333333333444556655 4554322 1456778888888
Q ss_pred EEEEeccCCCcceeee
Q psy92 401 LSLVARDYKPTQPNSK 416 (638)
Q Consensus 401 l~~~arD~~~~~v~~~ 416 (638)
-..+..-+.+|.-.++
T Consensus 281 W~~~~~~~~~r~~~~~ 296 (301)
T 2vpj_A 281 WEVVTSMGTQRCDAGV 296 (301)
T ss_dssp EEEEEEEEEEEESCEE
T ss_pred EEEcCCCCcccccceE
Confidence 8777665555544333
No 164
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=71.52 E-value=88 Score=31.41 Aligned_cols=69 Identities=19% Similarity=0.176 Sum_probs=41.8
Q ss_pred cEEEEeecccCCCCcccceeEEEEEEEEeecCCCCccccCceEEEEEEeeC--CceEEEc-cccCe-eEEEecCEEEEEE
Q psy92 277 GYIALGTNYNYSEDVTCRGRILLFDIIEVVPEPGQPLTKNKIKMIYAKEQK--GPVTAIC-HVAGF-LVTAVGQKIYIWQ 352 (638)
Q Consensus 277 ~~ivVGT~~~~~ed~~~~GrI~vf~i~~vvpe~g~~~t~~kLkl~~~~~~~--G~V~al~-~~~g~-Ll~avg~~l~v~~ 352 (638)
.++.|||-. ..|.|++|+++. + ..+++.+...... ..+..++ .-+|+ |+++....|.+|+
T Consensus 3 ~~~~vg~~~-------~~~~i~~~~~d~---~------~g~l~~~~~~~~~~~~~~~~~a~spdg~~l~~~~~~~v~~~~ 66 (365)
T 1jof_A 3 HHLMIGTWT-------PPGAIFTVQFDD---E------KLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAMKKWSSFA 66 (365)
T ss_dssp EEEEEEESS-------SSCEEEEEEEET---T------TTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEBTEEEEEE
T ss_pred EEEEEEEcc-------CCCcEEEEEEEC---C------CCCEEEeeEEccCCCCCCcEEEECCCCCEEEEEccceEEEEE
Confidence 567889832 125699998863 1 2367766554433 3565554 23454 6555444899999
Q ss_pred ee-CCceeee
Q psy92 353 LK-DNDLTGI 361 (638)
Q Consensus 353 l~-~~~L~~~ 361 (638)
+. +.++...
T Consensus 67 ~~~~g~~~~~ 76 (365)
T 1jof_A 67 VKSPTEIVHE 76 (365)
T ss_dssp EEETTEEEEE
T ss_pred ECCCCCEEEe
Confidence 97 6666543
No 165
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=70.62 E-value=50 Score=37.48 Aligned_cols=77 Identities=9% Similarity=0.138 Sum_probs=52.1
Q ss_pred CCceEEEccc-cCeeEEEecCEEEEEEeeCCceeeeEEee----cceeEEEEeee-cCEEEEeeccCcEEEEEEeccCCe
Q psy92 327 KGPVTAICHV-AGFLVTAVGQKIYIWQLKDNDLTGIAFID----TEVYIASMVSV-KNLILVGDYARSIALLRYQPEYRT 400 (638)
Q Consensus 327 ~G~V~al~~~-~g~Ll~avg~~l~v~~l~~~~L~~~a~~d----~~~~i~~i~~~-~~~IlvgD~~~Sv~ll~~~~~~~~ 400 (638)
...|++|+.- +|.|.+|....|+.|+...+++....... ....+.+|... ++.|.+|....++ ++|+++..+
T Consensus 449 ~~~v~~i~~d~~g~lwigt~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~~~Gl--~~~~~~~~~ 526 (781)
T 3v9f_A 449 LLDVRVFYEDKNKKIWIGTHAGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGTFGGGV--GIYTPDMQL 526 (781)
T ss_dssp CCCEEEEEECTTSEEEEEETTEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEEESSSCE--EEECTTCCE
T ss_pred CCeEEEEEECCCCCEEEEECCceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEEEEcCCCE--EEEeCCCCe
Confidence 3578888755 68999998889999988766665433211 12456666554 5688999887774 557776666
Q ss_pred EEEEe
Q psy92 401 LSLVA 405 (638)
Q Consensus 401 l~~~a 405 (638)
+..+.
T Consensus 527 ~~~~~ 531 (781)
T 3v9f_A 527 VRKFN 531 (781)
T ss_dssp EEEEC
T ss_pred EEEcc
Confidence 66554
No 166
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=70.55 E-value=43 Score=33.07 Aligned_cols=87 Identities=10% Similarity=0.056 Sum_probs=50.9
Q ss_pred EEccccCeeEEEec----------CEEEEEEeeCCceeeeEEeecceeEEEEeeecCEEE-Eeec-c---CcEEEEEEec
Q psy92 332 AICHVAGFLVTAVG----------QKIYIWQLKDNDLTGIAFIDTEVYIASMVSVKNLIL-VGDY-A---RSIALLRYQP 396 (638)
Q Consensus 332 al~~~~g~Ll~avg----------~~l~v~~l~~~~L~~~a~~d~~~~i~~i~~~~~~Il-vgD~-~---~Sv~ll~~~~ 396 (638)
+++.++++|++.-| +.+.+|++..++...++.+..+-+-.++.+.++.|+ +|=. . ..-.+..|+.
T Consensus 93 ~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~ 172 (315)
T 4asc_A 93 GLGEALNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLSHMDLVYVIGGKGSDRKCLNKMCVYDP 172 (315)
T ss_dssp EEEEETTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCTTSCBCCCEEEEET
T ss_pred eEEEECCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEEECCEEEEEeCCCCCCcccceEEEEeC
Confidence 34456777777666 247778887776665554333333344555666554 5533 1 1224567788
Q ss_pred cCCeEEEEeccCCCcceeeeec
Q psy92 397 EYRTLSLVARDYKPTQPNSKGY 418 (638)
Q Consensus 397 ~~~~l~~~arD~~~~~v~~~~~ 418 (638)
+.++-..++.-+.+|...++..
T Consensus 173 ~~~~W~~~~~~p~~r~~~~~~~ 194 (315)
T 4asc_A 173 KKFEWKELAPMQTARSLFGATV 194 (315)
T ss_dssp TTTEEEECCCCSSCCBSCEEEE
T ss_pred CCCeEEECCCCCCchhceEEEE
Confidence 8888888776666666545434
No 167
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=70.19 E-value=32 Score=34.03 Aligned_cols=85 Identities=16% Similarity=0.192 Sum_probs=51.4
Q ss_pred EEccccCeeEEEec-------CEEEEEEeeCCceeeeEEeecceeEEEEeeecCEEE-Eeecc---CcEEEEEEeccCCe
Q psy92 332 AICHVAGFLVTAVG-------QKIYIWQLKDNDLTGIAFIDTEVYIASMVSVKNLIL-VGDYA---RSIALLRYQPEYRT 400 (638)
Q Consensus 332 al~~~~g~Ll~avg-------~~l~v~~l~~~~L~~~a~~d~~~~i~~i~~~~~~Il-vgD~~---~Sv~ll~~~~~~~~ 400 (638)
+++.++++|++.-| ..+.+|++..+++..+..+..+-.-.++.+.++.|+ +|-.. ..-.+..|+.+.++
T Consensus 210 ~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 289 (308)
T 1zgk_A 210 GVCVLHNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSALGITVHQGRIYVLGGYDGHTFLDSVECYDPDTDT 289 (308)
T ss_dssp EEEEETTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCSSCBCCEEEEEETTTTE
T ss_pred eEEEECCEEEEEeCCCCCCccceEEEEeCCCCcEEECCCCCCCccceEEEEECCEEEEEcCcCCCcccceEEEEcCCCCE
Confidence 44455777766554 468888888777666553333323334445566554 55321 12356678888888
Q ss_pred EEEEeccCCCcceeee
Q psy92 401 LSLVARDYKPTQPNSK 416 (638)
Q Consensus 401 l~~~arD~~~~~v~~~ 416 (638)
-..++.-+.+|.-.++
T Consensus 290 W~~~~~~p~~r~~~~~ 305 (308)
T 1zgk_A 290 WSEVTRMTSGRSGVGV 305 (308)
T ss_dssp EEEEEECSSCCBSCEE
T ss_pred EeecCCCCCCccccee
Confidence 8888877777664443
No 168
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=69.97 E-value=56 Score=31.92 Aligned_cols=87 Identities=16% Similarity=0.215 Sum_probs=49.2
Q ss_pred EEccccCeeEEEec-------CEEEEEEeeCCceeeeEEeecceeEEEEeeecCEEEE-eeccC-----cEEEEEEeccC
Q psy92 332 AICHVAGFLVTAVG-------QKIYIWQLKDNDLTGIAFIDTEVYIASMVSVKNLILV-GDYAR-----SIALLRYQPEY 398 (638)
Q Consensus 332 al~~~~g~Ll~avg-------~~l~v~~l~~~~L~~~a~~d~~~~i~~i~~~~~~Ilv-gD~~~-----Sv~ll~~~~~~ 398 (638)
+++.++|+|++.-| +.+.+|++..+++..++.+..+-.-.++.+.++.|++ |-... .-.+..|+.+.
T Consensus 103 ~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~ 182 (302)
T 2xn4_A 103 GAAVLNGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVVGGLLYAVGGYDVASRQCLSTVECYNATT 182 (302)
T ss_dssp EEEEETTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCEETTTTEECCCEEEEETTT
T ss_pred EEEEECCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEEECCEEEEEeCCCCCCCccccEEEEEeCCC
Confidence 44445777666544 3577788877776665543333333344556665554 42211 12356678888
Q ss_pred CeEEEEeccCCCcceeeeec
Q psy92 399 RTLSLVARDYKPTQPNSKGY 418 (638)
Q Consensus 399 ~~l~~~arD~~~~~v~~~~~ 418 (638)
++-..++.-+.+|.-.++..
T Consensus 183 ~~W~~~~~~p~~r~~~~~~~ 202 (302)
T 2xn4_A 183 NEWTYIAEMSTRRSGAGVGV 202 (302)
T ss_dssp TEEEEECCCSSCCBSCEEEE
T ss_pred CcEEECCCCccccccccEEE
Confidence 88888776566665444433
No 169
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=68.08 E-value=95 Score=30.45 Aligned_cols=129 Identities=16% Similarity=0.153 Sum_probs=74.5
Q ss_pred cEEEEEeCCCceeecceeecCCCceeEeEEEEEEeeccCccCCcccEEEEeecccCCCCcccceeEEEEEEEEeecCCCC
Q psy92 232 FHVSLFSPFSWEEIPQTNFPLHEWEHVLCLKNVSMEYEGTLSGLRGYIALGTNYNYSEDVTCRGRILLFDIIEVVPEPGQ 311 (638)
Q Consensus 232 ~~i~lid~~t~~~i~~~~~~l~~~E~v~si~~v~l~~~~~~~~~~~~ivVGT~~~~~ed~~~~GrI~vf~i~~vvpe~g~ 311 (638)
..+++.|..+++... .+.-. ...+.++ .+.. ...+|+.|. ..|.|.+|++..
T Consensus 176 ~~i~~wd~~~~~~~~--~~~~h-~~~v~~~---~~sp------~g~~l~s~~---------~dg~i~iwd~~~------- 227 (319)
T 3frx_A 176 KMVKAWNLNQFQIEA--DFIGH-NSNINTL---TASP------DGTLIASAG---------KDGEIMLWNLAA------- 227 (319)
T ss_dssp SCEEEEETTTTEEEE--EECCC-CSCEEEE---EECT------TSSEEEEEE---------TTCEEEEEETTT-------
T ss_pred CEEEEEECCcchhhe--eecCC-CCcEEEE---EEcC------CCCEEEEEe---------CCCeEEEEECCC-------
Confidence 357777777666543 22211 2234443 3432 246888887 678999998642
Q ss_pred ccccCceEEEEEEeeCCceEEEcc-ccC-eeEEEecCEEEEEEeeCCceeeeEEe-------ecceeEEEEee--ecCEE
Q psy92 312 PLTKNKIKMIYAKEQKGPVTAICH-VAG-FLVTAVGQKIYIWQLKDNDLTGIAFI-------DTEVYIASMVS--VKNLI 380 (638)
Q Consensus 312 ~~t~~kLkl~~~~~~~G~V~al~~-~~g-~Ll~avg~~l~v~~l~~~~L~~~a~~-------d~~~~i~~i~~--~~~~I 380 (638)
-+.+......++|++++- -+| .|+++.+..+.+|.+....+...-.- .....+.++.. .+.+|
T Consensus 228 ------~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l 301 (319)
T 3frx_A 228 ------KKAMYTLSAQDEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTL 301 (319)
T ss_dssp ------TEEEEEEECCSCEEEEEECSSSSEEEEEETTEEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEE
T ss_pred ------CcEEEEecCCCcEEEEEEcCCCCEEEEEcCCCcEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCCEE
Confidence 223444455678988863 234 56666778999999875543321100 01223444443 46688
Q ss_pred EEeeccCcEEEEEE
Q psy92 381 LVGDYARSIALLRY 394 (638)
Q Consensus 381 lvgD~~~Sv~ll~~ 394 (638)
+.|..-..|.+...
T Consensus 302 ~sg~~Dg~i~vWd~ 315 (319)
T 3frx_A 302 FAGYTDNVIRVWQV 315 (319)
T ss_dssp EEEETTSCEEEEEE
T ss_pred EEeecCceEEEEEE
Confidence 88877777777654
No 170
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=66.08 E-value=60 Score=32.24 Aligned_cols=68 Identities=7% Similarity=0.072 Sum_probs=51.0
Q ss_pred EEEccccCeeEEEecC----EEEEEEeeCCceeeeEEeecceeEEEEeeecCEEEEeeccCcEEEEEEeccCC
Q psy92 331 TAICHVAGFLVTAVGQ----KIYIWQLKDNDLTGIAFIDTEVYIASMVSVKNLILVGDYARSIALLRYQPEYR 399 (638)
Q Consensus 331 ~al~~~~g~Ll~avg~----~l~v~~l~~~~L~~~a~~d~~~~i~~i~~~~~~IlvgD~~~Sv~ll~~~~~~~ 399 (638)
..|.--+|.|+.+.|. +|+++++...++...-.++...+...+...++.|++.+-..+. ++.|+.+..
T Consensus 46 qGL~~~~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~g~~ly~ltw~~~~-v~v~D~~t~ 117 (262)
T 3nol_A 46 EGFFYRNGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISDWKDKIVGLTWKNGL-GFVWNIRNL 117 (262)
T ss_dssp EEEEEETTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSE-EEEEETTTC
T ss_pred ceEEEECCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEEeCCEEEEEEeeCCE-EEEEECccC
Confidence 3444336789999887 8999999988876655566677888888899999999887765 456776543
No 171
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=65.36 E-value=1e+02 Score=30.28 Aligned_cols=85 Identities=14% Similarity=0.179 Sum_probs=48.1
Q ss_pred ccccCeeEEEecC--------EEEEEEeeCCceeeeEEeecceeEEEEeeecCEE-EEeeccC---cEEEEEEeccCCeE
Q psy92 334 CHVAGFLVTAVGQ--------KIYIWQLKDNDLTGIAFIDTEVYIASMVSVKNLI-LVGDYAR---SIALLRYQPEYRTL 401 (638)
Q Consensus 334 ~~~~g~Ll~avg~--------~l~v~~l~~~~L~~~a~~d~~~~i~~i~~~~~~I-lvgD~~~---Sv~ll~~~~~~~~l 401 (638)
+.++|+|++.-|. .+.+|++..+++..++....+-.-.++.+.++.| ++|-... .-.+..|+.+.++-
T Consensus 155 ~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W 234 (318)
T 2woz_A 155 ISHNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAIHKGKIVIAGGVTEDGLSASVEAFDLKTNKW 234 (318)
T ss_dssp EEETTEEEEECCEESSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEEEEEETTEEEEEEEEEETTTCCE
T ss_pred EEECCEEEEEcCCCCCCCccceEEEEcCCCCEEEECCCCCCCcccceEEEECCEEEEEcCcCCCCccceEEEEECCCCeE
Confidence 3367777665442 4778888877766655333332333444556655 4553222 12455788887888
Q ss_pred EEEeccCCCcceeeeec
Q psy92 402 SLVARDYKPTQPNSKGY 418 (638)
Q Consensus 402 ~~~arD~~~~~v~~~~~ 418 (638)
..++.-+.+|.-.++..
T Consensus 235 ~~~~~~p~~r~~~~~~~ 251 (318)
T 2woz_A 235 EVMTEFPQERSSISLVS 251 (318)
T ss_dssp EECCCCSSCCBSCEEEE
T ss_pred EECCCCCCcccceEEEE
Confidence 87776566665444333
No 172
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=65.19 E-value=1.2e+02 Score=30.44 Aligned_cols=60 Identities=8% Similarity=0.096 Sum_probs=35.4
Q ss_pred cCeeEEEe-cCEEEEEEeeCCceeeeEEeecceeEEEEeeecCEEEEeeccCcEEEEEEeccCCeE
Q psy92 337 AGFLVTAV-GQKIYIWQLKDNDLTGIAFIDTEVYIASMVSVKNLILVGDYARSIALLRYQPEYRTL 401 (638)
Q Consensus 337 ~g~Ll~av-g~~l~v~~l~~~~L~~~a~~d~~~~i~~i~~~~~~IlvgD~~~Sv~ll~~~~~~~~l 401 (638)
+|.++++. +..|+.++..+.++.-.. +... ...+...++.|++++....+. .|+....+.
T Consensus 239 ~~~v~~~~~~g~l~~~d~~tG~~~w~~--~~~~-~~~~~~~~~~l~~~~~~g~l~--~~d~~tG~~ 299 (376)
T 3q7m_A 239 NGVVFALAYNGNLTALDLRSGQIMWKR--ELGS-VNDFIVDGNRIYLVDQNDRVM--ALTIDGGVT 299 (376)
T ss_dssp TTEEEEECTTSCEEEEETTTCCEEEEE--CCCC-EEEEEEETTEEEEEETTCCEE--EEETTTCCE
T ss_pred CCEEEEEecCcEEEEEECCCCcEEeec--cCCC-CCCceEECCEEEEEcCCCeEE--EEECCCCcE
Confidence 57777765 567888888766543211 2222 234556789999998755544 445444443
No 173
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=64.84 E-value=85 Score=31.39 Aligned_cols=66 Identities=8% Similarity=-0.015 Sum_probs=35.2
Q ss_pred CEEEEEEeeCCceeeeEEeecceeE-EEEeeecCEEE-Eee------ccCcEEEEEEeccCCeEEEEeccCCCc
Q psy92 346 QKIYIWQLKDNDLTGIAFIDTEVYI-ASMVSVKNLIL-VGD------YARSIALLRYQPEYRTLSLVARDYKPT 411 (638)
Q Consensus 346 ~~l~v~~l~~~~L~~~a~~d~~~~i-~~i~~~~~~Il-vgD------~~~Sv~ll~~~~~~~~l~~~arD~~~~ 411 (638)
+.+.+|+...+++..++-+..+-.. .++.+.++.|+ +|- ....+..+.++++.++-..++.-..++
T Consensus 168 ~~v~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~~~~ 241 (357)
T 2uvk_A 168 KFLLSFDPSTQQWSYAGESPWYGTAGAAVVNKGDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPD 241 (357)
T ss_dssp CEEEEEETTTTEEEEEEECSSCCCBSCEEEEETTEEEEECCEEETTEECCCEEEEECC---CEEEECCCSSTTT
T ss_pred ccEEEEeCCCCcEEECCCCCCCCcccccEEEECCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCCCCCc
Confidence 5788899888887776643322222 45556666554 442 233344444444666777766544443
No 174
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=64.34 E-value=58 Score=32.52 Aligned_cols=82 Identities=7% Similarity=0.106 Sum_probs=57.7
Q ss_pred eEEEEEEeeC--CceEEEccccCeeEEEecC--EEEEEEeeCCceeeeEEeecceeEEEEeeecCEEEEeeccCcEEEEE
Q psy92 318 IKMIYAKEQK--GPVTAICHVAGFLVTAVGQ--KIYIWQLKDNDLTGIAFIDTEVYIASMVSVKNLILVGDYARSIALLR 393 (638)
Q Consensus 318 Lkl~~~~~~~--G~V~al~~~~g~Ll~avg~--~l~v~~l~~~~L~~~a~~d~~~~i~~i~~~~~~IlvgD~~~Sv~ll~ 393 (638)
.+++.+.... .-...|.--++.|+.+.|. +|++++++..++...- ++-..+...+...++.|++.+-..+. ++.
T Consensus 43 ~~Vv~~~phd~~~ftqGL~~~~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~g~~Ly~ltw~~~~-v~V 120 (268)
T 3nok_A 43 AHIIREYPHATNAFTQGLVFHQGHFFESTGHQGTLRQLSLESAQPVWME-RLGNIFAEGLASDGERLYQLTWTEGL-LFT 120 (268)
T ss_dssp EEEEEEEECCTTCCEEEEEEETTEEEEEETTTTEEEECCSSCSSCSEEE-ECTTCCEEEEEECSSCEEEEESSSCE-EEE
T ss_pred eEEEEEEcCCCccccceEEEECCEEEEEcCCCCEEEEEECCCCcEEeEE-CCCCcceeEEEEeCCEEEEEEccCCE-EEE
Confidence 3444444443 3335666556889999988 6999999887766555 77777888888899999999877665 556
Q ss_pred EeccCCeE
Q psy92 394 YQPEYRTL 401 (638)
Q Consensus 394 ~~~~~~~l 401 (638)
|+.+..++
T Consensus 121 ~D~~Tl~~ 128 (268)
T 3nok_A 121 WSGMPPQR 128 (268)
T ss_dssp EETTTTEE
T ss_pred EECCcCcE
Confidence 77654443
No 175
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=63.74 E-value=1.7e+02 Score=31.73 Aligned_cols=150 Identities=11% Similarity=0.093 Sum_probs=83.5
Q ss_pred EEEEEc-CCeEEEEEeCCCCCCCCCceeEEEeCCCcccEEEEec----CCCEEEEEEeeecCCCcccccCCccccccCCC
Q psy92 145 FLYFNA-KSELRISVLPTHLSYDAPWPVRKVPLKCTPHFLAYHL----ETKTYCIVTSTAEPSTDYYKFNGEDKELVTDP 219 (638)
Q Consensus 145 fl~~~~-~~~L~I~~l~~~~~~~~~~~~r~ipL~~tp~ri~y~~----~~~~~~V~~s~~~~~~~~~~~~~e~~e~~~~~ 219 (638)
++|+.+ ++.+++..++.. ..-.+++++.+..|+.++++| ..+.++++...
T Consensus 192 ~l~v~~~d~~V~v~D~~~~----t~~~~~~i~~g~~p~~va~sp~~~~dg~~l~v~~~~--------------------- 246 (543)
T 1nir_A 192 YLLVIGRDARIDMIDLWAK----EPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYW--------------------- 246 (543)
T ss_dssp EEEEEETTSEEEEEETTSS----SCEEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEE---------------------
T ss_pred EEEEECCCCeEEEEECcCC----CCcEEEEEecCCCcceEEeCCCcCCCCCEEEEEEcc---------------------
Confidence 666653 577777776311 134678899999999999999 88877665421
Q ss_pred CCCCCCCCcccccEEEEEeCCCceeecceeecCC----------CceeEeEEEEEEeeccCccCCcccEEEEeecccCCC
Q psy92 220 RDSRFIPPLVSQFHVSLFSPFSWEEIPQTNFPLH----------EWEHVLCLKNVSMEYEGTLSGLRGYIALGTNYNYSE 289 (638)
Q Consensus 220 ~~~~~~~p~~~~~~i~lid~~t~~~i~~~~~~l~----------~~E~v~si~~v~l~~~~~~~~~~~~ivVGT~~~~~e 289 (638)
...+.++|..+.+.+. .+... +.-.+.++ .+... ...++|..
T Consensus 247 -----------~~~v~v~D~~t~~~~~--~i~~~g~~~~~~~~~~~~~v~~i---~~s~~------~~~~~vs~------ 298 (543)
T 1nir_A 247 -----------PPQFAIMDGETLEPKQ--IVSTRGMTVDTQTYHPEPRVAAI---IASHE------HPEFIVNV------ 298 (543)
T ss_dssp -----------SSEEEEEETTTCCEEE--EEECCEECSSSCCEESCCCEEEE---EECSS------SSEEEEEE------
T ss_pred -----------CCeEEEEeccccccce--eecccCcccCccccccCCceEEE---EECCC------CCEEEEEE------
Confidence 1236677776666554 33321 11133332 23221 23344432
Q ss_pred CcccceeEEEEEEEEeecCCCCccccCceEEEEEEeeCCceEEE--ccccCeeEEEe--cCEEEEEEeeCCceee
Q psy92 290 DVTCRGRILLFDIIEVVPEPGQPLTKNKIKMIYAKEQKGPVTAI--CHVAGFLVTAV--GQKIYIWQLKDNDLTG 360 (638)
Q Consensus 290 d~~~~GrI~vf~i~~vvpe~g~~~t~~kLkl~~~~~~~G~V~al--~~~~g~Ll~av--g~~l~v~~l~~~~L~~ 360 (638)
...|+|.++++.. + ..++ +........++.+ .+-+.+|+++. .++|.+|+..+.++..
T Consensus 299 --~~~g~i~vvd~~~-----~-----~~l~-~~~i~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~ 360 (543)
T 1nir_A 299 --KETGKVLLVNYKD-----I-----DNLT-VTSIGAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSA 360 (543)
T ss_dssp --TTTTEEEEEECTT-----S-----SSCE-EEEEECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEE
T ss_pred --CCCCeEEEEEecC-----C-----Ccce-eEEeccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEE
Confidence 1468899988642 1 1233 1122233334433 33344566664 3599999998777654
No 176
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=62.48 E-value=1.3e+02 Score=29.98 Aligned_cols=130 Identities=15% Similarity=0.089 Sum_probs=75.4
Q ss_pred EEEEeCCCceeecceeecCCCceeEeEEEEEEeeccCccCCcccEEEEeecccCCCCcccceeEEEEEEEEeecCCCCcc
Q psy92 234 VSLFSPFSWEEIPQTNFPLHEWEHVLCLKNVSMEYEGTLSGLRGYIALGTNYNYSEDVTCRGRILLFDIIEVVPEPGQPL 313 (638)
Q Consensus 234 i~lid~~t~~~i~~~~~~l~~~E~v~si~~v~l~~~~~~~~~~~~ivVGT~~~~~ed~~~~GrI~vf~i~~vvpe~g~~~ 313 (638)
|+.+|+.+.+++. ++ +.+.-....+ .+. + ...++ .| ...+++++|+.
T Consensus 77 v~~iD~~Tgkv~~--~~-l~~~~FgeGi---t~~------g-~~Ly~-lt--------w~~~~v~V~D~----------- 123 (268)
T 3nok_A 77 LRQLSLESAQPVW--ME-RLGNIFAEGL---ASD------G-ERLYQ-LT--------WTEGLLFTWSG----------- 123 (268)
T ss_dssp EEECCSSCSSCSE--EE-ECTTCCEEEE---EEC------S-SCEEE-EE--------SSSCEEEEEET-----------
T ss_pred EEEEECCCCcEEe--EE-CCCCcceeEE---EEe------C-CEEEE-EE--------ccCCEEEEEEC-----------
Confidence 8888888888776 45 5543111111 111 1 22222 34 14678888874
Q ss_pred ccCceEEEEEEeeCCceEEEccccCeeEEEecC-EEEEEEeeCCceeeeEEeecc------eeEEEEeeecCEEEEeecc
Q psy92 314 TKNKIKMIYAKEQKGPVTAICHVAGFLVTAVGQ-KIYIWQLKDNDLTGIAFIDTE------VYIASMVSVKNLILVGDYA 386 (638)
Q Consensus 314 t~~kLkl~~~~~~~G~V~al~~~~g~Ll~avg~-~l~v~~l~~~~L~~~a~~d~~------~~i~~i~~~~~~IlvgD~~ 386 (638)
..++++.+....+.-.+||.-+++|+++-|+ +|++++....+. .+.+... .++..+...++.|++....
T Consensus 124 --~Tl~~~~ti~~~~eGwGLt~Dg~~L~vSdGs~~l~~iDp~T~~v--~~~I~V~~~g~~v~~lNeLe~~dG~lyanvw~ 199 (268)
T 3nok_A 124 --MPPQRERTTRYSGEGWGLCYWNGKLVRSDGGTMLTFHEPDGFAL--VGAVQVKLRGQPVELINELECANGVIYANIWH 199 (268)
T ss_dssp --TTTEEEEEEECSSCCCCEEEETTEEEEECSSSEEEEECTTTCCE--EEEEECEETTEECCCEEEEEEETTEEEEEETT
T ss_pred --CcCcEEEEEeCCCceeEEecCCCEEEEECCCCEEEEEcCCCCeE--EEEEEeCCCCcccccccccEEeCCEEEEEECC
Confidence 2566666666666567888777888888764 666666554333 2222221 1345566667888887754
Q ss_pred CcEEEEEEeccCCeE
Q psy92 387 RSIALLRYQPEYRTL 401 (638)
Q Consensus 387 ~Sv~ll~~~~~~~~l 401 (638)
.. .+++.+++..+.
T Consensus 200 s~-~I~vIDp~TG~V 213 (268)
T 3nok_A 200 SS-DVLEIDPATGTV 213 (268)
T ss_dssp CS-EEEEECTTTCBE
T ss_pred CC-eEEEEeCCCCcE
Confidence 44 566666655543
No 177
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=60.78 E-value=1.9e+02 Score=32.66 Aligned_cols=76 Identities=11% Similarity=0.015 Sum_probs=50.4
Q ss_pred CceEEEccc---cCeeEEEe-cCEEEEEEeeCCceeeeEEee---c-ceeEEEEeee-cCEEEEeeccCcEEEEEEeccC
Q psy92 328 GPVTAICHV---AGFLVTAV-GQKIYIWQLKDNDLTGIAFID---T-EVYIASMVSV-KNLILVGDYARSIALLRYQPEY 398 (638)
Q Consensus 328 G~V~al~~~---~g~Ll~av-g~~l~v~~l~~~~L~~~a~~d---~-~~~i~~i~~~-~~~IlvgD~~~Sv~ll~~~~~~ 398 (638)
..|.+|+.- +|.|.++. +..|+.|+.+.+++.....-. . ...+.+|... ++.|.+|....+ |++|+...
T Consensus 115 ~~i~~i~~d~~~~g~lwi~t~~~gl~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lwigt~~~G--l~~~~~~~ 192 (781)
T 3v9f_A 115 NDVTHITSSVQAGKGLWVCTYYRGIEYLDIATGKFTHYNKSTVPALPSEQTWTATEAEDGKLYIGHVEGG--LSILSLND 192 (781)
T ss_dssp SCEEEEEECSSTTSEEEEEESSSCEEEEETTTTEEEEESTTTCTTCSCCCEEEEEEEETTEEEEEETTTE--EEEEETTT
T ss_pred CcceEEEecCccCCCEEEEECCCCeeEEECCCCeEEeeccCcccCCCccceEEEEECCCCCEEEEecCCC--eEEEcCCC
Confidence 368888765 58999998 888999988766654421100 1 1345666554 789999987666 55677776
Q ss_pred CeEEEEe
Q psy92 399 RTLSLVA 405 (638)
Q Consensus 399 ~~l~~~a 405 (638)
.++..+.
T Consensus 193 ~~~~~~~ 199 (781)
T 3v9f_A 193 KSVKHFV 199 (781)
T ss_dssp TEEEEEC
T ss_pred CceEeee
Confidence 6666553
No 178
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=59.69 E-value=1.1e+02 Score=28.36 Aligned_cols=45 Identities=18% Similarity=0.070 Sum_probs=25.9
Q ss_pred EEEEEcCCeEEEEEeCC-CCCCCCCceeEEEe-CC--CcccEEEEecCCCEEEEEE
Q psy92 145 FLYFNAKSELRISVLPT-HLSYDAPWPVRKVP-LK--CTPHFLAYHLETKTYCIVT 196 (638)
Q Consensus 145 fl~~~~~~~L~I~~l~~-~~~~~~~~~~r~ip-L~--~tp~ri~y~~~~~~~~V~~ 196 (638)
++++..++.+.+..+.. .. .+.+. .. ..+..++++|..+.++.+.
T Consensus 55 ~l~~~~~~~i~~~d~~~~~~-------~~~~~~~~~~~~~~~~~~spdg~~l~~~~ 103 (297)
T 2ojh_A 55 YLLLNSEGLLYRLSLAGDPS-------PEKVDTGFATICNNDHGISPDGALYAISD 103 (297)
T ss_dssp EEEEEETTEEEEEESSSCCS-------CEECCCTTCCCBCSCCEECTTSSEEEEEE
T ss_pred EEEEEcCCeEEEEeCCCCCC-------ceEeccccccccccceEECCCCCEEEEEE
Confidence 45555677777776654 21 11222 11 3456789999888766544
No 179
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=58.47 E-value=1.6e+02 Score=29.83 Aligned_cols=95 Identities=8% Similarity=0.133 Sum_probs=55.3
Q ss_pred cCEEEEEEeeCCceeeeEEe---ec-ceeEEEEee----------ecCEEEEeeccCcEEEEEEeccCCeEEEEeccCCC
Q psy92 345 GQKIYIWQLKDNDLTGIAFI---DT-EVYIASMVS----------VKNLILVGDYARSIALLRYQPEYRTLSLVARDYKP 410 (638)
Q Consensus 345 g~~l~v~~l~~~~L~~~a~~---d~-~~~i~~i~~----------~~~~IlvgD~~~Sv~ll~~~~~~~~l~~~arD~~~ 410 (638)
..+|++|+...++......+ .. .-.|.++.. .+.+|+-|-.-+.|-+.............. ..
T Consensus 110 d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~~~~~---~~ 186 (393)
T 4gq1_A 110 DNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPILAGYP---LS 186 (393)
T ss_dssp TSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEEEEEEE---CS
T ss_pred CCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCceeeeecC---CC
Confidence 45899999987654432222 11 234555554 345666666666777766544322222222 23
Q ss_pred cceeeeecccCCCCCcccccccceeeeeeccccccccccccCCcccccccCCCceeEEEEeCCCcEEEEEeCC
Q psy92 411 TQPNSKGYYAGNPSRGIIDGSLVWKFLQLSLGERLEICKKIGSKHNDILDEFSSMGFMISDKDKNVVLFMYQP 483 (638)
Q Consensus 411 ~~v~~~~~l~~~~~~~~vd~~~~~~~~~~~~gd~~~~~~r~~~~~~~~~~~~~~l~~l~aD~~~nl~v~~~~~ 483 (638)
..++++.|- .+ +.. .++.+..++.+.++....
T Consensus 187 ~~v~~v~~~--------p~--------------------------------~~~-~l~~~~~d~~v~~wd~~t 218 (393)
T 4gq1_A 187 SPGISVQFR--------PS--------------------------------NPN-QLIVGERNGNIRIFDWTL 218 (393)
T ss_dssp SCEEEEEEE--------TT--------------------------------EEE-EEEEEETTSEEEEEETTC
T ss_pred CCcEEEEEC--------CC--------------------------------CCc-eEEecCCCCEEEEEECCC
Confidence 457777775 34 332 377888999999987643
No 180
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=57.30 E-value=1.5e+02 Score=29.03 Aligned_cols=87 Identities=9% Similarity=0.022 Sum_probs=52.5
Q ss_pred EEccccCeeEEEecC--------EEEEEEeeCCceeeeEEeecceeEEEEeeecCEE-EEeeccC---cEEEEEEeccCC
Q psy92 332 AICHVAGFLVTAVGQ--------KIYIWQLKDNDLTGIAFIDTEVYIASMVSVKNLI-LVGDYAR---SIALLRYQPEYR 399 (638)
Q Consensus 332 al~~~~g~Ll~avg~--------~l~v~~l~~~~L~~~a~~d~~~~i~~i~~~~~~I-lvgD~~~---Sv~ll~~~~~~~ 399 (638)
+++.++++|++.-|. .+.+|++..++...++.+..+-.-.++.+.++.| ++|-... .-.+..|+.+.+
T Consensus 143 ~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~ 222 (315)
T 4asc_A 143 TVLSHMDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTARSLFGATVHDGRIIVAAGVTDTGLTSSAEVYSITDN 222 (315)
T ss_dssp EEEEETTEEEEECCBCTTSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEEEEECSSSEEEEEEEEETTTT
T ss_pred eEEEECCEEEEEeCCCCCCcccceEEEEeCCCCeEEECCCCCCchhceEEEEECCEEEEEeccCCCCccceEEEEECCCC
Confidence 344467777666554 5788888877766655333333334455556655 4554322 225677888888
Q ss_pred eEEEEeccCCCcceeeeec
Q psy92 400 TLSLVARDYKPTQPNSKGY 418 (638)
Q Consensus 400 ~l~~~arD~~~~~v~~~~~ 418 (638)
+-..++.-+.+|.-.++..
T Consensus 223 ~W~~~~~~p~~r~~~~~~~ 241 (315)
T 4asc_A 223 KWAPFEAFPQERSSLSLVS 241 (315)
T ss_dssp EEEEECCCSSCCBSCEEEE
T ss_pred eEEECCCCCCcccceeEEE
Confidence 8888877666666554444
No 181
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=57.03 E-value=1.5e+02 Score=28.88 Aligned_cols=107 Identities=9% Similarity=0.041 Sum_probs=59.1
Q ss_pred cccEEEEeecccCCCCcccceeEEEEEEEEeecCCCCccccCceEEEEEEeeCC--ceEEEc-cccCeeEEEecCEEEEE
Q psy92 275 LRGYIALGTNYNYSEDVTCRGRILLFDIIEVVPEPGQPLTKNKIKMIYAKEQKG--PVTAIC-HVAGFLVTAVGQKIYIW 351 (638)
Q Consensus 275 ~~~~ivVGT~~~~~ed~~~~GrI~vf~i~~vvpe~g~~~t~~kLkl~~~~~~~G--~V~al~-~~~g~Ll~avg~~l~v~ 351 (638)
...+|++|. ..|+|++|+.. .| +++.+....+ .++++. .-+|.++++.++.|+.|
T Consensus 4 ~~~~lv~~~---------~~~~v~~~d~~-----tG--------~~~w~~~~~~~~~~~~~~~~pdG~ilvs~~~~V~~~ 61 (276)
T 3no2_A 4 PQHLLVGGS---------GWNKIAIINKD-----TK--------EIVWEYPLEKGWECNSVAATKAGEILFSYSKGAKMI 61 (276)
T ss_dssp CCEEEEECT---------TCSEEEEEETT-----TT--------EEEEEEECCTTCCCCEEEECTTSCEEEECBSEEEEE
T ss_pred CCcEEEeeC---------CCCEEEEEECC-----CC--------eEEEEeCCCccCCCcCeEECCCCCEEEeCCCCEEEE
Confidence 346777776 56899988631 11 2344444432 355443 34788888888888888
Q ss_pred EeeCCceeeeEEeecceeEEEEeee-cCEEEEeeccCcEEEEEEeccCCeEEEE
Q psy92 352 QLKDNDLTGIAFIDTEVYIASMVSV-KNLILVGDYARSIALLRYQPEYRTLSLV 404 (638)
Q Consensus 352 ~l~~~~L~~~a~~d~~~~i~~i~~~-~~~IlvgD~~~Sv~ll~~~~~~~~l~~~ 404 (638)
+. +.+++-.--......+.++... ++.++++|.-..-.++.++++...+-.+
T Consensus 62 d~-~G~~~W~~~~~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~~Gk~l~~~ 114 (276)
T 3no2_A 62 TR-DGRELWNIAAPAGCEMQTARILPDGNALVAWCGHPSTILEVNMKGEVLSKT 114 (276)
T ss_dssp CT-TSCEEEEEECCTTCEEEEEEECTTSCEEEEEESTTEEEEEECTTSCEEEEE
T ss_pred CC-CCCEEEEEcCCCCccccccEECCCCCEEEEecCCCCEEEEEeCCCCEEEEE
Confidence 88 4554322111112344444433 3455666655334566777765544444
No 182
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=52.35 E-value=1.9e+02 Score=28.80 Aligned_cols=100 Identities=13% Similarity=0.133 Sum_probs=53.8
Q ss_pred cEEEEeecccCCCCcccceeEEEEEEEEeecCCCCccccCceEEEEEEeeCCceEEEccccCeeEEEec-CEEEEEEeeC
Q psy92 277 GYIALGTNYNYSEDVTCRGRILLFDIIEVVPEPGQPLTKNKIKMIYAKEQKGPVTAICHVAGFLVTAVG-QKIYIWQLKD 355 (638)
Q Consensus 277 ~~ivVGT~~~~~ed~~~~GrI~vf~i~~vvpe~g~~~t~~kLkl~~~~~~~G~V~al~~~~g~Ll~avg-~~l~v~~l~~ 355 (638)
..+.+|+ ..|+++.|+... | + ++.+... +...++...++.|+++.. ..|+.++..+
T Consensus 240 ~~v~~~~---------~~g~l~~~d~~t-----G------~--~~w~~~~-~~~~~~~~~~~~l~~~~~~g~l~~~d~~t 296 (376)
T 3q7m_A 240 GVVFALA---------YNGNLTALDLRS-----G------Q--IMWKREL-GSVNDFIVDGNRIYLVDQNDRVMALTIDG 296 (376)
T ss_dssp TEEEEEC---------TTSCEEEEETTT-----C------C--EEEEECC-CCEEEEEEETTEEEEEETTCCEEEEETTT
T ss_pred CEEEEEe---------cCcEEEEEECCC-----C------c--EEeeccC-CCCCCceEECCEEEEEcCCCeEEEEECCC
Confidence 4566665 467887776421 2 1 2233333 234445555778877764 4788888876
Q ss_pred CceeeeEEeecceeEEEEeeecCEEEEeeccCcEEEEEEeccCCeE
Q psy92 356 NDLTGIAFIDTEVYIASMVSVKNLILVGDYARSIALLRYQPEYRTL 401 (638)
Q Consensus 356 ~~L~~~a~~d~~~~i~~i~~~~~~IlvgD~~~Sv~ll~~~~~~~~l 401 (638)
.+++-...........+....++.|++++....+.. ++.+..++
T Consensus 297 G~~~w~~~~~~~~~~~~~~~~~~~l~v~~~~g~l~~--~d~~tG~~ 340 (376)
T 3q7m_A 297 GVTLWTQSDLLHRLLTSPVLYNGNLVVGDSEGYLHW--INVEDGRF 340 (376)
T ss_dssp CCEEEEECTTTTSCCCCCEEETTEEEEECTTSEEEE--EETTTCCE
T ss_pred CcEEEeecccCCCcccCCEEECCEEEEEeCCCeEEE--EECCCCcE
Confidence 654321110001123334456899999987554444 45544444
No 183
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=51.84 E-value=1.7e+02 Score=28.52 Aligned_cols=77 Identities=12% Similarity=0.115 Sum_probs=44.2
Q ss_pred ceEEEccc--cCeeEEE-ecCEEEEEEeeCCceeeeEEeec---ceeEEEEeee--cCEEEEeeccC-------------
Q psy92 329 PVTAICHV--AGFLVTA-VGQKIYIWQLKDNDLTGIAFIDT---EVYIASMVSV--KNLILVGDYAR------------- 387 (638)
Q Consensus 329 ~V~al~~~--~g~Ll~a-vg~~l~v~~l~~~~L~~~a~~d~---~~~i~~i~~~--~~~IlvgD~~~------------- 387 (638)
.+.+|+-- +|.|++| .+..|+.++...+++...+.... ..++..+.+. ++.|+|+|...
T Consensus 81 ~p~gi~~~~~~g~l~v~d~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~ 160 (322)
T 2fp8_A 81 RTYDISYNLQNNQLYIVDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDT 160 (322)
T ss_dssp CEEEEEEETTTTEEEEEETTTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHH
T ss_pred CCceEEEcCCCCcEEEEECCCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcc
Confidence 46777643 5788888 56667777655443333221111 1235566655 36889998652
Q ss_pred ---cEEEEEEeccCCeEEEEe
Q psy92 388 ---SIALLRYQPEYRTLSLVA 405 (638)
Q Consensus 388 ---Sv~ll~~~~~~~~l~~~a 405 (638)
.=.+++|+.+..++..+.
T Consensus 161 ~~~~g~v~~~d~~~~~~~~~~ 181 (322)
T 2fp8_A 161 SDKTGRLIKYDPSTKETTLLL 181 (322)
T ss_dssp TCCCEEEEEEETTTTEEEEEE
T ss_pred cCCCceEEEEeCCCCEEEEec
Confidence 245778887656555443
No 184
>1dul_A Signal recognition particle protein (fifty-four homolog); protein-RNA complex, double helix, tetraloop, internal loop, SRP, ribonucleoprotein; HET: CCC; 1.80A {Escherichia coli} SCOP: a.36.1.1 PDB: 2xkv_C
Probab=51.73 E-value=17 Score=28.68 Aligned_cols=28 Identities=14% Similarity=0.144 Sum_probs=24.1
Q ss_pred CHHHHHHHHHHhCCCHHHHHHHHHHhhh
Q psy92 606 SLGERLEICKKIGSKHNDILDELYDIEA 633 (638)
Q Consensus 606 ~~~~q~~ia~~lg~~~~~i~~~l~~l~~ 633 (638)
..+.+..||++.|++++|+.+.|...+.
T Consensus 34 ~~SR~~RIA~GSG~~v~eVn~Llkqf~~ 61 (69)
T 1dul_A 34 KGSRKRRIAAGSGMQVQDVNRLLKQFDD 61 (69)
T ss_dssp CHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHccCCCCHHHHHHHHHHHHH
Confidence 4678999999999999999998887654
No 185
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=50.02 E-value=1.6e+02 Score=27.34 Aligned_cols=69 Identities=7% Similarity=0.083 Sum_probs=38.1
Q ss_pred ceEEEccc-cCeeEEEe--cCEEEEEEeeCCceeeeEEeecceeEEEEeeec-CEEEEeeccCcEEEEEEeccCC
Q psy92 329 PVTAICHV-AGFLVTAV--GQKIYIWQLKDNDLTGIAFIDTEVYIASMVSVK-NLILVGDYARSIALLRYQPEYR 399 (638)
Q Consensus 329 ~V~al~~~-~g~Ll~av--g~~l~v~~l~~~~L~~~a~~d~~~~i~~i~~~~-~~IlvgD~~~Sv~ll~~~~~~~ 399 (638)
.+.+|+-- +|+|+++. +..|++|+...+......... ...+..|.... +.++|+|...+ .+.+|+.+..
T Consensus 151 ~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~-~~~p~~i~~d~~g~l~v~~~~~~-~v~~~~~~~~ 223 (270)
T 1rwi_B 151 DPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTD-ITAPWGIAVDEAGTVYVTEHNTN-QVVKLLAGST 223 (270)
T ss_dssp SCCCEEECTTCCEEEEEGGGTEEEEECTTTCCEEECCCSS-CCSEEEEEECTTCCEEEEETTTS-CEEEECTTCS
T ss_pred CceeEEEeCCCCEEEEECCCCEEEEEecCCCceEeecccC-CCCceEEEECCCCCEEEEECCCC-cEEEEcCCCC
Confidence 45555432 57787775 358888887654433211111 13456666654 48889887542 1344555443
No 186
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=49.58 E-value=96 Score=30.51 Aligned_cols=87 Identities=13% Similarity=0.190 Sum_probs=48.9
Q ss_pred EEccccCeeEEEec---------CEEEEEEeeCCceeeeEEeecceeEEEEeeecCEE-EEeeccC----cEEEEEEecc
Q psy92 332 AICHVAGFLVTAVG---------QKIYIWQLKDNDLTGIAFIDTEVYIASMVSVKNLI-LVGDYAR----SIALLRYQPE 397 (638)
Q Consensus 332 al~~~~g~Ll~avg---------~~l~v~~l~~~~L~~~a~~d~~~~i~~i~~~~~~I-lvgD~~~----Sv~ll~~~~~ 397 (638)
+++.++++|++.-| +.+.+|+...+++..++-+..+-+-.++.+.++.| ++|-... .=.+..|+.+
T Consensus 104 ~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~ 183 (318)
T 2woz_A 104 GLGEVDDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVISHNGMIYCLGGKTDDKKCTNRVFIYNPK 183 (318)
T ss_dssp EEEEETTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEEETTEEEEECCEESSSCBCCCEEEEETT
T ss_pred ceEEECCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEEECCEEEEEcCCCCCCCccceEEEEcCC
Confidence 44445677665544 24677777777766655333333333444566655 4553211 1235678888
Q ss_pred CCeEEEEeccCCCcceeeeec
Q psy92 398 YRTLSLVARDYKPTQPNSKGY 418 (638)
Q Consensus 398 ~~~l~~~arD~~~~~v~~~~~ 418 (638)
.++-..++.-..+|...++..
T Consensus 184 ~~~W~~~~~~p~~r~~~~~~~ 204 (318)
T 2woz_A 184 KGDWKDLAPMKTPRSMFGVAI 204 (318)
T ss_dssp TTEEEEECCCSSCCBSCEEEE
T ss_pred CCEEEECCCCCCCcccceEEE
Confidence 888888876666665544433
No 187
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=49.00 E-value=2.5e+02 Score=29.25 Aligned_cols=62 Identities=11% Similarity=0.057 Sum_probs=43.0
Q ss_pred EEEeCCCCCCCCCceeEEEeCCC--------cccEEEEecCCCEEEEEEeeecCCCcccccCCccccccCCCCCCCCCCC
Q psy92 156 ISVLPTHLSYDAPWPVRKVPLKC--------TPHFLAYHLETKTYCIVTSTAEPSTDYYKFNGEDKELVTDPRDSRFIPP 227 (638)
Q Consensus 156 I~~l~~~~~~~~~~~~r~ipL~~--------tp~ri~y~~~~~~~~V~~s~~~~~~~~~~~~~e~~e~~~~~~~~~~~~p 227 (638)
|..++.. ..-.+++|+++. .|+.++++|..+.+.|....
T Consensus 111 VsviD~~----t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~----------------------------- 157 (386)
T 3sjl_D 111 VEVFDPV----TLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFS----------------------------- 157 (386)
T ss_dssp EEEECTT----TCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECS-----------------------------
T ss_pred EEEEECC----CCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcC-----------------------------
Confidence 5556652 245678888753 79999999998877664210
Q ss_pred cccccEEEEEeCCCceeecceeecCCC
Q psy92 228 LVSQFHVSLFSPFSWEEIPQTNFPLHE 254 (638)
Q Consensus 228 ~~~~~~i~lid~~t~~~i~~~~~~l~~ 254 (638)
....+.+||..+++++. ++++..
T Consensus 158 --~~~~VsVID~~t~~vv~--tI~v~g 180 (386)
T 3sjl_D 158 --PAPAVGVVDLEGKAFKR--MLDVPD 180 (386)
T ss_dssp --SSCEEEEEETTTTEEEE--EEECCS
T ss_pred --CCCeEEEEECCCCcEEE--EEECCC
Confidence 12368899999999886 666543
No 188
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=48.65 E-value=2e+02 Score=27.90 Aligned_cols=46 Identities=17% Similarity=0.139 Sum_probs=26.3
Q ss_pred CCcEEEEEc-CCeEEEEEeCCCCCCCCCceeEEEeCCC--cccEEEEecCCCEEE
Q psy92 142 PRGFLYFNA-KSELRISVLPTHLSYDAPWPVRKVPLKC--TPHFLAYHLETKTYC 193 (638)
Q Consensus 142 ~~gfl~~~~-~~~L~I~~l~~~~~~~~~~~~r~ipL~~--tp~ri~y~~~~~~~~ 193 (638)
|+.+|+..+ ++.+.+ ++. +..-.+.+++.+. .++.++..|..+.++
T Consensus 4 ~~~~lv~~~~~~~v~~--~d~----~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv 52 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAI--INK----DTKEIVWEYPLEKGWECNSVAATKAGEILF 52 (276)
T ss_dssp CCEEEEECTTCSEEEE--EET----TTTEEEEEEECCTTCCCCEEEECTTSCEEE
T ss_pred CCcEEEeeCCCCEEEE--EEC----CCCeEEEEeCCCccCCCcCeEECCCCCEEE
Confidence 445555443 344443 333 1234566777764 588888888777655
No 189
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=48.17 E-value=3.4e+02 Score=30.51 Aligned_cols=75 Identities=8% Similarity=0.147 Sum_probs=47.4
Q ss_pred eEEEccc-cCeeEEEec-CEEEEEEeeCCceeeeEEeecceeEEEEeee-cCEEEEeeccCcEEEEEEeccCCeEEEEec
Q psy92 330 VTAICHV-AGFLVTAVG-QKIYIWQLKDNDLTGIAFIDTEVYIASMVSV-KNLILVGDYARSIALLRYQPEYRTLSLVAR 406 (638)
Q Consensus 330 V~al~~~-~g~Ll~avg-~~l~v~~l~~~~L~~~a~~d~~~~i~~i~~~-~~~IlvgD~~~Sv~ll~~~~~~~~l~~~ar 406 (638)
|.++..- +|.|.++.. ..|+.|+.+.+++...........|.+|... ++.|.||....++ ++|+....++..+..
T Consensus 175 i~~i~~d~~g~lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lwigt~~~Gl--~~~~~~~~~~~~~~~ 252 (795)
T 4a2l_A 175 IASTLYRQGDQIYIGTSTDGLYTYSITQKTFEKVIPILGTKQIQAILQQSPTRIWVATEGAGL--FLINPKTKEIKNYLH 252 (795)
T ss_dssp CEEEEEEETTEEEEEESSSCEEEEETTTCCEEECC----CCCEEEEEEEETTEEEEEEBSSCE--EEEETTTTEEEEECC
T ss_pred eEEEEECCCCCEEEEECCCCEEEEeCCCCeEEEecCCCCCCeeEEEEEcCCCCEEEEECCCCe--EEEeCCCCeEEEeec
Confidence 7777653 788888874 5788888876665543211123345565543 5789999877774 557776666766544
No 190
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=47.82 E-value=1.8e+02 Score=31.86 Aligned_cols=48 Identities=15% Similarity=0.360 Sum_probs=29.8
Q ss_pred eeEEEEEEEEeecCCCCccccCceEEEEEEeeCCceEEE--ccccCeeEEEecCEEEEEEeeC
Q psy92 295 GRILLFDIIEVVPEPGQPLTKNKIKMIYAKEQKGPVTAI--CHVAGFLVTAVGQKIYIWQLKD 355 (638)
Q Consensus 295 GrI~vf~i~~vvpe~g~~~t~~kLkl~~~~~~~G~V~al--~~~~g~Ll~avg~~l~v~~l~~ 355 (638)
|.|++|++.. .+++.+. ...+.+.++ .+-+.+|+.+.+.+|++|++..
T Consensus 101 ~~i~~~d~~~-----------~~~~~l~--~~~~~~~~~~~SpdG~~la~~~~~~i~v~~~~~ 150 (706)
T 2z3z_A 101 GGLVGFDMLA-----------RKVTYLF--DTNEETASLDFSPVGDRVAYVRNHNLYIARGGK 150 (706)
T ss_dssp TEEEEEETTT-----------TEEEEEE--CCTTCCTTCEECTTSSEEEEEETTEEEEEECBC
T ss_pred CEEEEEECCC-----------CceEEcc--CCcccccCCcCCCCCCEEEEEECCeEEEEecCc
Confidence 7899887631 2333322 234444433 3434467778889999999987
No 191
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=47.41 E-value=2.3e+02 Score=30.24 Aligned_cols=65 Identities=17% Similarity=0.195 Sum_probs=37.8
Q ss_pred ccCeeEEEec------CEEEEEEeeCCceeeeEEeecceeEEEEee--ecCEEEEeeccCcEEEEEEeccCCeEE
Q psy92 336 VAGFLVTAVG------QKIYIWQLKDNDLTGIAFIDTEVYIASMVS--VKNLILVGDYARSIALLRYQPEYRTLS 402 (638)
Q Consensus 336 ~~g~Ll~avg------~~l~v~~l~~~~L~~~a~~d~~~~i~~i~~--~~~~IlvgD~~~Sv~ll~~~~~~~~l~ 402 (638)
-+|+.++..+ ..|++|++..+++.... .....+.++.. .+.+|+.++.-....+..|+.+..+..
T Consensus 159 pDG~~la~~~~~~~~~~~i~~~d~~~g~~~~l~--~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~ 231 (582)
T 3o4h_A 159 IRGDLIAGLGFFGGGRVSLFTSNLSSGGLRVFD--SGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE 231 (582)
T ss_dssp EETTEEEEEEEEETTEEEEEEEETTTCCCEEEC--CSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE
T ss_pred CCCCEEEEEEEcCCCCeEEEEEcCCCCCceEee--cCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE
Confidence 4676666433 35778887766655432 22233344433 466777776655567777876655555
No 192
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=47.06 E-value=79 Score=30.41 Aligned_cols=92 Identities=9% Similarity=0.134 Sum_probs=52.6
Q ss_pred cceeEEEEEEEEeecCCCCccccCce---EEEEEEeeCCceEEEcc-ccCeeEEEecCEEEEEEeeCCceeeeEEeecce
Q psy92 293 CRGRILLFDIIEVVPEPGQPLTKNKI---KMIYAKEQKGPVTAICH-VAGFLVTAVGQKIYIWQLKDNDLTGIAFIDTEV 368 (638)
Q Consensus 293 ~~GrI~vf~i~~vvpe~g~~~t~~kL---kl~~~~~~~G~V~al~~-~~g~Ll~avg~~l~v~~l~~~~L~~~a~~d~~~ 368 (638)
..++|++|++.. .| ++ ..+. ....+.+.+|+. -+|+|+++.+..|.+|+...+.+.. +..+.
T Consensus 191 ~~~~i~~~~~~~----~g------~~~~~~~~~-~~~~~~p~~i~~d~~G~l~v~~~~~v~~~~~~g~~~~~---~~~~~ 256 (296)
T 3e5z_A 191 GDNATHRYCLNA----RG------ETEYQGVHF-TVEPGKTDGLRVDAGGLIWASAGDGVHVLTPDGDELGR---VLTPQ 256 (296)
T ss_dssp TTTEEEEEEECS----SS------CEEEEEEEE-CCSSSCCCSEEEBTTSCEEEEETTEEEEECTTSCEEEE---EECSS
T ss_pred CCCeEEEEEECC----CC------cCcCCCeEe-eCCCCCCCeEEECCCCCEEEEcCCeEEEECCCCCEEEE---EECCC
Confidence 457999998752 12 23 2222 223456666653 4688888889999999886332322 22322
Q ss_pred eEEEEeee---cCEEEEeeccCcEEEEEEeccCCeE
Q psy92 369 YIASMVSV---KNLILVGDYARSIALLRYQPEYRTL 401 (638)
Q Consensus 369 ~i~~i~~~---~~~IlvgD~~~Sv~ll~~~~~~~~l 401 (638)
.++++..- ++.++++.. . .+++++....++
T Consensus 257 ~~~~~~f~~~d~~~L~v~t~-~--~l~~~~~~~~~~ 289 (296)
T 3e5z_A 257 TTSNLCFGGPEGRTLYMTVS-T--EFWSIETNVRGL 289 (296)
T ss_dssp CCCEEEEESTTSCEEEEEET-T--EEEEEECSCCBC
T ss_pred CceeEEEECCCCCEEEEEcC-C--eEEEEEcccccc
Confidence 24454442 357888875 3 456666655444
No 193
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=45.24 E-value=2.1e+02 Score=27.37 Aligned_cols=59 Identities=7% Similarity=0.022 Sum_probs=33.0
Q ss_pred eEEEccc-cCeeEEEec-CEEEEEEeeCCceeeeEEeecceeEEEEee-ecCEEEEeeccCcEEEE
Q psy92 330 VTAICHV-AGFLVTAVG-QKIYIWQLKDNDLTGIAFIDTEVYIASMVS-VKNLILVGDYARSIALL 392 (638)
Q Consensus 330 V~al~~~-~g~Ll~avg-~~l~v~~l~~~~L~~~a~~d~~~~i~~i~~-~~~~IlvgD~~~Sv~ll 392 (638)
+.+++.. +|.|+++.. ..|+.|+.+ .++....... ...+.++.. .++.|++|. .++..+
T Consensus 139 ~~~~~~~~~g~l~vgt~~~~l~~~d~~-g~~~~~~~~~-~~~~~~~~~d~~g~l~v~t--~~l~~~ 200 (330)
T 3hxj_A 139 YATPIVSEDGTIYVGSNDNYLYAINPD-GTEKWRFKTN-DAITSAASIGKDGTIYFGS--DKVYAI 200 (330)
T ss_dssp CSCCEECTTSCEEEECTTSEEEEECTT-SCEEEEEECS-SCCCSCCEECTTCCEEEES--SSEEEE
T ss_pred eeeeEEcCCCEEEEEcCCCEEEEECCC-CCEeEEEecC-CCceeeeEEcCCCEEEEEe--CEEEEE
Confidence 4444444 788888875 788888876 4433211111 122334444 356788888 665444
No 194
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=45.10 E-value=2.1e+02 Score=27.24 Aligned_cols=107 Identities=13% Similarity=0.070 Sum_probs=59.7
Q ss_pred ccEEEEeecccCCCCcccceeEEEEEEEEeecCCCCccccCceEEEEEEeeCCceEEEcc-ccCeeEEEec--CEEEEEE
Q psy92 276 RGYIALGTNYNYSEDVTCRGRILLFDIIEVVPEPGQPLTKNKIKMIYAKEQKGPVTAICH-VAGFLVTAVG--QKIYIWQ 352 (638)
Q Consensus 276 ~~~ivVGT~~~~~ed~~~~GrI~vf~i~~vvpe~g~~~t~~kLkl~~~~~~~G~V~al~~-~~g~Ll~avg--~~l~v~~ 352 (638)
+.++++++ ..|+|+.|+... .++.+ ....+.+.+|+- -+|.|+++.. ..|++|+
T Consensus 40 ~~l~~~~~---------~~~~i~~~~~~~------------~~~~~--~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d 96 (296)
T 3e5z_A 40 SAVIFSDV---------RQNRTWAWSDDG------------QLSPE--MHPSHHQNGHCLNKQGHLIACSHGLRRLERQR 96 (296)
T ss_dssp TEEEEEEG---------GGTEEEEEETTS------------CEEEE--ESSCSSEEEEEECTTCCEEEEETTTTEEEEEC
T ss_pred CEEEEEeC---------CCCEEEEEECCC------------CeEEE--ECCCCCcceeeECCCCcEEEEecCCCeEEEEc
Confidence 34788887 567888876321 12222 123466777763 4678888863 5899998
Q ss_pred eeCCceeeeEEeecc---eeEEEEeee-cCEEEEeecc----------------CcEEEEEEeccCCeEEEEec
Q psy92 353 LKDNDLTGIAFIDTE---VYIASMVSV-KNLILVGDYA----------------RSIALLRYQPEYRTLSLVAR 406 (638)
Q Consensus 353 l~~~~L~~~a~~d~~---~~i~~i~~~-~~~IlvgD~~----------------~Sv~ll~~~~~~~~l~~~ar 406 (638)
..++++......... ..+..+.+. ++.+++.|.. .+-.+++|+.+ .++..+..
T Consensus 97 ~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~ 169 (296)
T 3e5z_A 97 EPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLSAPIR 169 (296)
T ss_dssp STTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEEEEEC
T ss_pred CCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCEEEeec
Confidence 876665443211111 122233333 3567776542 13467788776 55555543
No 195
>1hq1_A Signal recognition particle protein; protein-RNA complex, double helix, tetraloop, internal loop, SRP, ribonucleoprotein; HET: CCC; 1.52A {Escherichia coli} SCOP: a.36.1.1 PDB: 3lqx_A* 2pxb_A 2pxd_A 2pxe_A 2pxf_A 2pxk_A 2pxl_A 2pxp_A 2pxq_A 2pxt_A 2pxu_A 2pxv_A
Probab=40.47 E-value=29 Score=29.66 Aligned_cols=29 Identities=14% Similarity=0.171 Sum_probs=24.6
Q ss_pred CHHHHHHHHHHhCCCHHHHHHHHHHhhhc
Q psy92 606 SLGERLEICKKIGSKHNDILDELYDIEAL 634 (638)
Q Consensus 606 ~~~~q~~ia~~lg~~~~~i~~~l~~l~~~ 634 (638)
..+++++||++.|++++|+.+.|...+..
T Consensus 68 ~~SR~~RIA~GSG~~v~eVn~LLkqf~~m 96 (105)
T 1hq1_A 68 KGSRKRRIAAGSGMQVQDVNRLLKQFDDM 96 (105)
T ss_dssp CHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHccCCCCHHHHHHHHHHHHHH
Confidence 46789999999999999999988876543
No 196
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=40.25 E-value=1.1e+02 Score=30.39 Aligned_cols=82 Identities=12% Similarity=0.072 Sum_probs=46.6
Q ss_pred EEccccCeeEEEecC------------EEEEEEeeCCceeeeEEee-cceeEEEEeeecCEE-EEeeccC----------
Q psy92 332 AICHVAGFLVTAVGQ------------KIYIWQLKDNDLTGIAFID-TEVYIASMVSVKNLI-LVGDYAR---------- 387 (638)
Q Consensus 332 al~~~~g~Ll~avg~------------~l~v~~l~~~~L~~~a~~d-~~~~i~~i~~~~~~I-lvgD~~~---------- 387 (638)
+++.++|+|++.-|. .+.+|++..+++..++... .+-+-.++.+.++.| ++|=...
T Consensus 60 ~~~~~~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~ 139 (357)
T 2uvk_A 60 TSAFIDGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSWVKLMSHAPMGMAGHVTFVHNGKAYVTGGVNQNIFNGYFEDL 139 (357)
T ss_dssp EEEEETTEEEEECCEEECTTSCEEECCCEEEEETTTTEEEECSCCCSSCCSSEEEEEETTEEEEEECCCHHHHHHHHHHH
T ss_pred eEEEECCEEEEEcCCCCCCCccceeeccEEEEeCCCCcEEECCCCCCcccccceEEEECCEEEEEeCcCCCcCcccccch
Confidence 344556776665443 4677887777766555433 222333344466655 4553211
Q ss_pred ---------------------------cEEEEEEeccCCeEEEEeccCCCcce
Q psy92 388 ---------------------------SIALLRYQPEYRTLSLVARDYKPTQP 413 (638)
Q Consensus 388 ---------------------------Sv~ll~~~~~~~~l~~~arD~~~~~v 413 (638)
.=.+..|+.+.++-..++.-+.++..
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~~~ 192 (357)
T 2uvk_A 140 NEAGKDSTAIDKINAHYFDKKAEDYFFNKFLLSFDPSTQQWSYAGESPWYGTA 192 (357)
T ss_dssp HHHTTCHHHHHHHHHHHHSSCGGGGCCCCEEEEEETTTTEEEEEEECSSCCCB
T ss_pred hhcCCcccchhhhhhhhccccccccCCcccEEEEeCCCCcEEECCCCCCCCcc
Confidence 13577888888888888765554443
No 197
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=39.82 E-value=2.6e+02 Score=26.75 Aligned_cols=70 Identities=11% Similarity=0.010 Sum_probs=38.2
Q ss_pred ceEEEcc-ccCeeEEEecCEEEEEEeeCCceeeeEEeecceeEEEEeeec-CEEEEeeccCcEEEEEEeccCCeEEE
Q psy92 329 PVTAICH-VAGFLVTAVGQKIYIWQLKDNDLTGIAFIDTEVYIASMVSVK-NLILVGDYARSIALLRYQPEYRTLSL 403 (638)
Q Consensus 329 ~V~al~~-~~g~Ll~avg~~l~v~~l~~~~L~~~a~~d~~~~i~~i~~~~-~~IlvgD~~~Sv~ll~~~~~~~~l~~ 403 (638)
.+.++.. -+|.|+++. ..|+.++ .+.+..-.. ......+.++...+ +.|.+|+...++..+ ++....+..
T Consensus 178 ~~~~~~~d~~g~l~v~t-~~l~~~d-~~g~~~~~~-~~~~~~~~~~~~~~~g~l~v~t~~~gl~~~--~~~g~~~~~ 249 (330)
T 3hxj_A 178 ITSAASIGKDGTIYFGS-DKVYAIN-PDGTEKWNF-YAGYWTVTRPAISEDGTIYVTSLDGHLYAI--NPDGTEKWR 249 (330)
T ss_dssp CCSCCEECTTCCEEEES-SSEEEEC-TTSCEEEEE-CCSSCCCSCCEECTTSCEEEEETTTEEEEE--CTTSCEEEE
T ss_pred ceeeeEEcCCCEEEEEe-CEEEEEC-CCCcEEEEE-ccCCcceeceEECCCCeEEEEcCCCeEEEE--CCCCCEeEE
Confidence 4444444 478888888 7888887 433322111 11112344455554 488888876665544 555444443
No 198
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=38.99 E-value=3.1e+02 Score=27.63 Aligned_cols=101 Identities=17% Similarity=0.177 Sum_probs=61.0
Q ss_pred ccEEEEeecccCCCCcccceeEEEEEEEEeecCCCCccccCceEEEEE-EeeCCceEEEcc---------ccCeeEEEec
Q psy92 276 RGYIALGTNYNYSEDVTCRGRILLFDIIEVVPEPGQPLTKNKIKMIYA-KEQKGPVTAICH---------VAGFLVTAVG 345 (638)
Q Consensus 276 ~~~ivVGT~~~~~ed~~~~GrI~vf~i~~vvpe~g~~~t~~kLkl~~~-~~~~G~V~al~~---------~~g~Ll~avg 345 (638)
..+++.|. ..|.|.+|++... .. .....+.. .-..+.|.+|+- ..|++||..|
T Consensus 101 ~~~las~~---------~d~~v~lw~~~~~-----~~---~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s 163 (393)
T 4gq1_A 101 SLFLACVC---------QDNTVRLIITKNE-----TI---ITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVG 163 (393)
T ss_dssp EEEEEEEE---------TTSCEEEEEEETT-----EE---EEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEE
T ss_pred CCEEEEEe---------CCCcEEEEECCCC-----cc---ceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEE
Confidence 45666665 5678899987631 00 01111110 123578888863 2678888766
Q ss_pred C--EEEEEEeeCCceeeeEEeecceeEEEEeee---cCEEEEeeccCcEEEEEE
Q psy92 346 Q--KIYIWQLKDNDLTGIAFIDTEVYIASMVSV---KNLILVGDYARSIALLRY 394 (638)
Q Consensus 346 ~--~l~v~~l~~~~L~~~a~~d~~~~i~~i~~~---~~~IlvgD~~~Sv~ll~~ 394 (638)
. +|+||++.+++.. ...+.....+.++... +++++.|..-..|.+...
T Consensus 164 ~D~tv~~Wd~~~~~~~-~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~ 216 (393)
T 4gq1_A 164 DDCTLIIWRLTDEGPI-LAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDW 216 (393)
T ss_dssp TTSEEEEEEEETTEEE-EEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEET
T ss_pred CCCeEEEEECCCCcee-eeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEEC
Confidence 5 8999999865422 2233445566777654 247888888888877654
No 199
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=38.52 E-value=4.5e+02 Score=29.22 Aligned_cols=74 Identities=24% Similarity=0.327 Sum_probs=47.5
Q ss_pred CceEEEccccCeeEEEecCEEEEEEeeCCceeeeEEe--ec-ceeEEEEeee-cCEEEEeeccCcEEEEEEeccCCeEEE
Q psy92 328 GPVTAICHVAGFLVTAVGQKIYIWQLKDNDLTGIAFI--DT-EVYIASMVSV-KNLILVGDYARSIALLRYQPEYRTLSL 403 (638)
Q Consensus 328 G~V~al~~~~g~Ll~avg~~l~v~~l~~~~L~~~a~~--d~-~~~i~~i~~~-~~~IlvgD~~~Sv~ll~~~~~~~~l~~ 403 (638)
..|.+++.-+|.|.++....|+.|+...+++...... .. ...|.+|... ++.|.||.. .+ +++|++...++..
T Consensus 103 ~~i~~i~~~~g~lWigt~~Gl~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigt~-~G--l~~~~~~~~~~~~ 179 (758)
T 3ott_A 103 TDVRTMALQGDTLWLGALNGLYTYQLQSRKLTSFDTRRNGLPNNTIYSIIRTKDNQIYVGTY-NG--LCRYIPSNGKFEG 179 (758)
T ss_dssp SCEEEEEEETTEEEEEETTEEEEEETTTCCEEEECHHHHCCSCSCEEEEEECTTCCEEEEET-TE--EEEEETTTTEEEE
T ss_pred ceEEEEEecCCcEEEEcCCcceeEeCCCCeEEEeccCCCCcCCCeEEEEEEcCCCCEEEEeC-CC--HhhCccCCCceEE
Confidence 3466776668899999888888888776665532110 01 2345566554 577888874 44 6678877666654
Q ss_pred E
Q psy92 404 V 404 (638)
Q Consensus 404 ~ 404 (638)
+
T Consensus 180 ~ 180 (758)
T 3ott_A 180 I 180 (758)
T ss_dssp E
T ss_pred e
Confidence 4
No 200
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=36.70 E-value=2.4e+02 Score=27.63 Aligned_cols=58 Identities=10% Similarity=0.102 Sum_probs=30.7
Q ss_pred EEEEEEeeCCceeeeEEeecceeEEEEeee-cCEEEEeeccCcEEEEEEeccCC--eEEEEe
Q psy92 347 KIYIWQLKDNDLTGIAFIDTEVYIASMVSV-KNLILVGDYARSIALLRYQPEYR--TLSLVA 405 (638)
Q Consensus 347 ~l~v~~l~~~~L~~~a~~d~~~~i~~i~~~-~~~IlvgD~~~Sv~ll~~~~~~~--~l~~~a 405 (638)
+|++|+....++....--..-..+..|.+. ++.++|+|.... .+.+|+.+.. .+..++
T Consensus 70 ~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g~l~v~d~~~~-~v~~~~~~g~~~~~~~~~ 130 (329)
T 3fvz_A 70 TILVIDPNNAEILQSSGKNLFYLPHGLSIDTDGNYWVTDVALH-QVFKLDPHSKEGPLLILG 130 (329)
T ss_dssp CEEEECTTTCCEEEEECTTTCSSEEEEEECTTSCEEEEETTTT-EEEEECTTCSSCCSEEES
T ss_pred cEEEEECCCCeEEeccCCCccCCceEEEECCCCCEEEEECCCC-EEEEEeCCCCeEEEEEec
Confidence 478887766665432110111234555544 344888888654 3666776544 344444
No 201
>2jqe_A SRP54, signal recognition 54 kDa protein; AF54, structure, solution, signaling protein; NMR {Archaeoglobus fulgidus}
Probab=36.09 E-value=35 Score=29.79 Aligned_cols=29 Identities=10% Similarity=0.113 Sum_probs=24.7
Q ss_pred CHHHHHHHHHHhCCCHHHHHHHHHHhhhc
Q psy92 606 SLGERLEICKKIGSKHNDILDELYDIEAL 634 (638)
Q Consensus 606 ~~~~q~~ia~~lg~~~~~i~~~l~~l~~~ 634 (638)
..+++++||++.|++++|+.+.|...+..
T Consensus 77 ~~SR~~RIA~GSG~~v~eVn~LLkqf~~m 105 (119)
T 2jqe_A 77 DSSRIRRIAIGSGTSPQEVKELLNYYKTM 105 (119)
T ss_dssp CHHHHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHccCCCCHHHHHHHHHHHHHH
Confidence 46889999999999999999888876543
No 202
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=34.68 E-value=2.9e+02 Score=25.77 Aligned_cols=264 Identities=9% Similarity=-0.012 Sum_probs=0.0
Q ss_pred CCcEEEEEcCCeEEEEEeCCCCCCCCCceeEEEe-CCCcccEEEEecCCCEEEEEEeeecCCCcccccCCccccccCCCC
Q psy92 142 PRGFLYFNAKSELRISVLPTHLSYDAPWPVRKVP-LKCTPHFLAYHLETKTYCIVTSTAEPSTDYYKFNGEDKELVTDPR 220 (638)
Q Consensus 142 ~~gfl~~~~~~~L~I~~l~~~~~~~~~~~~r~ip-L~~tp~ri~y~~~~~~~~V~~s~~~~~~~~~~~~~e~~e~~~~~~ 220 (638)
++|-+++++.+.=.|..++. +..+..-.++ -...|+.|+..+..+.|+..
T Consensus 24 ~~g~l~v~~~~~~~v~~~d~----~~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~------------------------- 74 (299)
T 2z2n_A 24 DKGKVWITQHKANMISCINL----DGKITEYPLPTPDAKVMCLTISSDGEVWFTE------------------------- 74 (299)
T ss_dssp TTSCEEEEETTTTEEEEECT----TCCEEEEECSSTTCCEEEEEECTTSCEEEEE-------------------------
T ss_pred CCCCEEEEecCCCcEEEEcC----CCCeEEecCCcccCceeeEEECCCCCEEEeC-------------------------
Q ss_pred CCCCCCCcccccEEEEEeCCCceeecceeecCC-CceeEeEEEEEEeeccCccCCcccEEEEeecccCCCCcccceeEEE
Q psy92 221 DSRFIPPLVSQFHVSLFSPFSWEEIPQTNFPLH-EWEHVLCLKNVSMEYEGTLSGLRGYIALGTNYNYSEDVTCRGRILL 299 (638)
Q Consensus 221 ~~~~~~p~~~~~~i~lid~~t~~~i~~~~~~l~-~~E~v~si~~v~l~~~~~~~~~~~~ivVGT~~~~~ed~~~~GrI~v 299 (638)
.....|..+++. ..+. .+.+. ....+.++. ...+ ..+++.++ ..|+|+.
T Consensus 75 --------~~~~~i~~~~~~--g~~~--~~~~~~~~~~~~~i~----~~~~-----g~l~v~~~---------~~~~i~~ 124 (299)
T 2z2n_A 75 --------NAANKIGRITKK--GIIK--EYTLPNPDSAPYGIT----EGPN-----GDIWFTEM---------NGNRIGR 124 (299)
T ss_dssp --------TTTTEEEEECTT--SCEE--EEECSSTTCCEEEEE----ECTT-----SCEEEEET---------TTTEEEE
T ss_pred --------CCCCeEEEECCC--CcEE--EEeCCCcCCCceeeE----ECCC-----CCEEEEec---------CCceEEE
Q ss_pred EEEEEeecCCCCccccCceEEEEEEeeCCceEEEccc-cCeeEEEe--cCEEEEEEeeCCceeeeEEeecceeEEEEeee
Q psy92 300 FDIIEVVPEPGQPLTKNKIKMIYAKEQKGPVTAICHV-AGFLVTAV--GQKIYIWQLKDNDLTGIAFIDTEVYIASMVSV 376 (638)
Q Consensus 300 f~i~~vvpe~g~~~t~~kLkl~~~~~~~G~V~al~~~-~g~Ll~av--g~~l~v~~l~~~~L~~~a~~d~~~~i~~i~~~ 376 (638)
|+. . .+++..........+.+|+.- +|+|+++. +..|+.|+. ++++.....-.....+..+...
T Consensus 125 ~d~-~-----------g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~ 191 (299)
T 2z2n_A 125 ITD-D-----------GKIREYELPNKGSYPSFITLGSDNALWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKG 191 (299)
T ss_dssp ECT-T-----------CCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEEC
T ss_pred ECC-C-----------CCEEEecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEEC
Q ss_pred c-CEEEEeeccCcEEEEEEeccCCeEEEEeccCCCcceeeeecccCCCCCcccccccceeeeeeccccccccccccCCcc
Q psy92 377 K-NLILVGDYARSIALLRYQPEYRTLSLVARDYKPTQPNSKGYYAGNPSRGIIDGSLVWKFLQLSLGERLEICKKIGSKH 455 (638)
Q Consensus 377 ~-~~IlvgD~~~Sv~ll~~~~~~~~l~~~arD~~~~~v~~~~~l~~~~~~~~vd~~~~~~~~~~~~gd~~~~~~r~~~~~ 455 (638)
. +.++++|...+ .+.+|+. ..++..+.-......+.++.+ |
T Consensus 192 ~~g~l~v~~~~~~-~i~~~~~-~g~~~~~~~~~~~~~~~~i~~----------~-------------------------- 233 (299)
T 2z2n_A 192 NDDALWFVEIIGN-KIGRITT-SGEITEFKIPTPNARPHAITA----------G-------------------------- 233 (299)
T ss_dssp TTSSEEEEETTTT-EEEEECT-TCCEEEEECSSTTCCEEEEEE----------C--------------------------
T ss_pred CCCCEEEEccCCc-eEEEECC-CCcEEEEECCCCCCCceeEEE----------C--------------------------
Q ss_pred cccccCCCceeEEEEeCCCcEEEEEeCCCCcCCCCCceEEEEeeeecCcceeeEEEEeccCCCCCCCCCCCCceEEEEEe
Q psy92 456 NDILDEFSSMGFMISDKDKNVVLFMYQPEARESNGGHRLIKKTDFHLGQHVNTFFKIRCKPSSISDAPGARSRFLTWYAS 535 (638)
Q Consensus 456 ~~~~~~~~~l~~l~aD~~~nl~v~~~~~~~~~s~~~~~L~~~~~f~lg~~v~~~~~~~~~~~~~~~~~~~~~~~~il~~t 535 (638)
.+..+ +++.-..+.|..+..+. ++.....-.-+..+..+.. + ...+++++
T Consensus 234 -----~~g~l-~v~~~~~~~i~~~d~~g---------~~~~~~~~~~~~~~~~i~~-~--------------~g~l~v~~ 283 (299)
T 2z2n_A 234 -----AGIDL-WFTEWGANKIGRLTSNN---------IIEEYPIQIKSAEPHGICF-D--------------GETIWFAM 283 (299)
T ss_dssp -----STTCE-EEEETTTTEEEEEETTT---------EEEEEECSSSSCCEEEEEE-C--------------SSCEEEEE
T ss_pred -----CCCCE-EEeccCCceEEEECCCC---------ceEEEeCCCCCCccceEEe-c--------------CCCEEEEe
Q ss_pred CCCcEEEEEe
Q psy92 536 LDGALGFFLP 545 (638)
Q Consensus 536 ~~GsIg~l~p 545 (638)
..|.|..+-|
T Consensus 284 ~~~~l~~~~~ 293 (299)
T 2z2n_A 284 ECDKIGKLTL 293 (299)
T ss_dssp TTTEEEEEEE
T ss_pred cCCcEEEEEc
No 203
>1sfu_A 34L protein; protein/Z-DNA complex, DNA binding protein/DNA complex; 2.00A {Yaba-like disease virus} SCOP: a.4.5.19
Probab=34.49 E-value=33 Score=27.45 Aligned_cols=33 Identities=15% Similarity=0.401 Sum_probs=27.3
Q ss_pred HHcCCHHH---HHHHHHHhCCCHHHHHHHHHHhhhc
Q psy92 602 FLQLSLGE---RLEICKKIGSKHNDILDELYDIEAL 634 (638)
Q Consensus 602 fl~L~~~~---q~~ia~~lg~~~~~i~~~l~~l~~~ 634 (638)
...|+.++ -.+||++||++..+|.+.|..|+..
T Consensus 21 i~~L~~~~~~Ta~~IAkkLg~sK~~vNr~LY~L~kk 56 (75)
T 1sfu_A 21 VLSLNTNDYTTAISLSNRLKINKKKINQQLYKLQKE 56 (75)
T ss_dssp HHTSCTTCEECHHHHHHHTTCCHHHHHHHHHHHHHT
T ss_pred HHhCCCCcchHHHHHHHHHCCCHHHHHHHHHHHHHC
Confidence 34576665 6899999999999999999998754
No 204
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=34.20 E-value=3.7e+02 Score=26.89 Aligned_cols=70 Identities=17% Similarity=0.192 Sum_probs=43.4
Q ss_pred EEEccccCeeEEEec------------CEEEEEEeeCCceeeeEEeecceeEEEEee--ecCEEEEeeccCcEEEEEEec
Q psy92 331 TAICHVAGFLVTAVG------------QKIYIWQLKDNDLTGIAFIDTEVYIASMVS--VKNLILVGDYARSIALLRYQP 396 (638)
Q Consensus 331 ~al~~~~g~Ll~avg------------~~l~v~~l~~~~L~~~a~~d~~~~i~~i~~--~~~~IlvgD~~~Sv~ll~~~~ 396 (638)
.++..-.++++++.. .+|.+|++...+. ++.+.... +..|.. .+.+++++.- .+|.++ +.
T Consensus 259 ~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~--v~~i~~~~-p~~ia~spdg~~l~v~n~-~~v~v~--D~ 332 (361)
T 2oiz_A 259 VGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQR--VARIPGRD-ALSMTIDQQRNLMLTLDG-GNVNVY--DI 332 (361)
T ss_dssp EEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEE--EEEEECTT-CCEEEEETTTTEEEEECS-SCEEEE--EC
T ss_pred EEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcE--EEEEecCC-eeEEEECCCCCEEEEeCC-CeEEEE--EC
Confidence 355555577777653 3788888876553 33444444 555544 4678888875 777775 66
Q ss_pred cCCeEEEEec
Q psy92 397 EYRTLSLVAR 406 (638)
Q Consensus 397 ~~~~l~~~ar 406 (638)
+..+|.++++
T Consensus 333 ~t~~l~~~~~ 342 (361)
T 2oiz_A 333 SQPEPKLLRT 342 (361)
T ss_dssp SSSSCEEEEE
T ss_pred CCCcceeeEE
Confidence 6664455555
No 205
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=33.11 E-value=3.5e+02 Score=26.35 Aligned_cols=66 Identities=15% Similarity=0.259 Sum_probs=35.0
Q ss_pred CceEEEccccCeeEEEecC---------EEEEEEeeCCceeeeEE--eecceeEEEEeeec-CEEEEeeccC-cEEEEE
Q psy92 328 GPVTAICHVAGFLVTAVGQ---------KIYIWQLKDNDLTGIAF--IDTEVYIASMVSVK-NLILVGDYAR-SIALLR 393 (638)
Q Consensus 328 G~V~al~~~~g~Ll~avg~---------~l~v~~l~~~~L~~~a~--~d~~~~i~~i~~~~-~~IlvgD~~~-Sv~ll~ 393 (638)
+.+++++--.|.++++-|. ++++|++.+.++...-- -.....+..|.+.. +.|+|+|... .|..+.
T Consensus 241 ~~~~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~ 319 (329)
T 3fvz_A 241 RNVFAISYIPGFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFT 319 (329)
T ss_dssp TCEEEEEEETTEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEE
T ss_pred CCcceeeecCCEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEEe
Confidence 4556655333555555543 67778877666543210 01122355555543 4888888765 444443
No 206
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=32.69 E-value=3.1e+02 Score=25.54 Aligned_cols=72 Identities=13% Similarity=0.106 Sum_probs=39.8
Q ss_pred ceEEEccc-cCeeEEEe--cCEEEEEEeeCCceeeeEEeecceeEEEEeee-cCEEEEeeccCcEEEEEEeccCCeEEE
Q psy92 329 PVTAICHV-AGFLVTAV--GQKIYIWQLKDNDLTGIAFIDTEVYIASMVSV-KNLILVGDYARSIALLRYQPEYRTLSL 403 (638)
Q Consensus 329 ~V~al~~~-~g~Ll~av--g~~l~v~~l~~~~L~~~a~~d~~~~i~~i~~~-~~~IlvgD~~~Sv~ll~~~~~~~~l~~ 403 (638)
.+.+|+.- +|.|+++. +..|++|+. ++++.....-.....+..|... ++.|+++|...+ .+.+|+.+ .++..
T Consensus 189 ~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~-~i~~~~~~-g~~~~ 264 (300)
T 2qc5_A 189 APVGITSGNDGALWFVEIMGNKIGRITT-TGEISEYDIPTPNARPHAITAGKNSEIWFTEWGAN-QIGRITND-NTIQE 264 (300)
T ss_dssp CEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTT-EEEEECTT-SCEEE
T ss_pred CcceEEECCCCCEEEEccCCCEEEEEcC-CCcEEEEECCCCCCCceEEEECCCCCEEEeccCCC-eEEEECCC-CcEEE
Confidence 46666533 67888876 457888887 4444432211122345566554 346888886532 34556653 34433
No 207
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=32.64 E-value=5.1e+02 Score=28.10 Aligned_cols=226 Identities=6% Similarity=-0.016 Sum_probs=102.1
Q ss_pred CCc-EEEEEcCCeEEEEEeCC-----CCCCCCCceeEEE-eCCCc---------------ccEEEEecCCCEEEEEEeee
Q psy92 142 PRG-FLYFNAKSELRISVLPT-----HLSYDAPWPVRKV-PLKCT---------------PHFLAYHLETKTYCIVTSTA 199 (638)
Q Consensus 142 ~~g-fl~~~~~~~L~I~~l~~-----~~~~~~~~~~r~i-pL~~t---------------p~ri~y~~~~~~~~V~~s~~ 199 (638)
|+| .|++..++.|.+..+.. .. .+++ ..+.. ++.++++|..+.++.+....
T Consensus 130 pdG~~la~~~~~~i~v~~~~~~~~~~g~-------~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~ 202 (706)
T 2z3z_A 130 PVGDRVAYVRNHNLYIARGGKLGEGMSR-------AIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQ 202 (706)
T ss_dssp TTSSEEEEEETTEEEEEECBCTTSCCCC-------CEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEEC
T ss_pred CCCCEEEEEECCeEEEEecCcccccCCC-------cEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECC
Confidence 554 45556788898888765 21 1222 12222 47899999988887665332
Q ss_pred cCCCcccccCCccccccCCCCCCCCCCCc----ccccEEEEEeCCCceeecceeecC-CCceeEeEEEEEEeeccCccCC
Q psy92 200 EPSTDYYKFNGEDKELVTDPRDSRFIPPL----VSQFHVSLFSPFSWEEIPQTNFPL-HEWEHVLCLKNVSMEYEGTLSG 274 (638)
Q Consensus 200 ~~~~~~~~~~~e~~e~~~~~~~~~~~~p~----~~~~~i~lid~~t~~~i~~~~~~l-~~~E~v~si~~v~l~~~~~~~~ 274 (638)
.....+...+.... .+......+|. .....|.++|..+.+... .... .....+. .+.+..+
T Consensus 203 ~~~~~~~~~~~~~~----~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~--~~~~~~~~~~~~---~~~~spd----- 268 (706)
T 2z3z_A 203 SMVKPTPIVDYHPL----EAESKPLYYPMAGTPSHHVTVGIYHLATGKTVY--LQTGEPKEKFLT---NLSWSPD----- 268 (706)
T ss_dssp TTSCCEEEEECCSS----SCEEEEECCCBTTSCCCEEEEEEEETTTTEEEE--CCCCSCTTCEEE---EEEECTT-----
T ss_pred CCCceEEeeccCCC----CCceEEeeCCCCCCCCCeeEEEEEECCCCceEe--eccCCCCceeEe---eEEEECC-----
Confidence 11000000000000 00000011111 123578899987766532 1111 1222333 3444332
Q ss_pred cccEEEEeecccCCCCcccceeEEEEEEEEeecCCCCccccCceEEEEEEeeCCc---eEE--Ecc-ccCeeEEEec--C
Q psy92 275 LRGYIALGTNYNYSEDVTCRGRILLFDIIEVVPEPGQPLTKNKIKMIYAKEQKGP---VTA--ICH-VAGFLVTAVG--Q 346 (638)
Q Consensus 275 ~~~~ivVGT~~~~~ed~~~~GrI~vf~i~~vvpe~g~~~t~~kLkl~~~~~~~G~---V~a--l~~-~~g~Ll~avg--~ 346 (638)
..+|+++.... ....+.|+++++.. ..+++.+......+. +.+ ... .+|+++++.+ .
T Consensus 269 -g~~l~~~~~~~----~~~~~~v~~~d~~~----------g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g 333 (706)
T 2z3z_A 269 -ENILYVAEVNR----AQNECKVNAYDAET----------GRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDG 333 (706)
T ss_dssp -SSEEEEEEECT----TSCEEEEEEEETTT----------CCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTS
T ss_pred -CCEEEEEEeCC----CCCeeEEEEEECCC----------CceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCC
Confidence 35666655211 12356777776421 124455544333322 222 222 1666665542 3
Q ss_pred EEEEEEee-CCc-eeeeEEeecceeEEE---EeeecCEEEEeeccCc---EEEEEEeccCCeEEEEe
Q psy92 347 KIYIWQLK-DND-LTGIAFIDTEVYIAS---MVSVKNLILVGDYARS---IALLRYQPEYRTLSLVA 405 (638)
Q Consensus 347 ~l~v~~l~-~~~-L~~~a~~d~~~~i~~---i~~~~~~IlvgD~~~S---v~ll~~~~~~~~l~~~a 405 (638)
.+.+|.+. +.+ +..+. .....+.+ ....+++|+++-...+ ..++.++.+..++..+.
T Consensus 334 ~~~l~~~~~~~~~~~~l~--~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~l~ 398 (706)
T 2z3z_A 334 WNHLYLYDTTGRLIRQVT--KGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGKTKDLT 398 (706)
T ss_dssp SCEEEEEETTSCEEEECC--CSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCCCEESC
T ss_pred ccEEEEEECCCCEEEecC--CCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCCceecc
Confidence 46666665 332 32221 11122222 2334567766554443 67777766544444443
No 208
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=31.98 E-value=4.6e+02 Score=28.05 Aligned_cols=154 Identities=15% Similarity=0.146 Sum_probs=0.0
Q ss_pred CCcccEEEEeecccCCCCcccceeEEEEEEEEeecCCCCccccCceEEEEEE---------eeCCceEEEccccCeeEEE
Q psy92 273 SGLRGYIALGTNYNYSEDVTCRGRILLFDIIEVVPEPGQPLTKNKIKMIYAK---------EQKGPVTAICHVAGFLVTA 343 (638)
Q Consensus 273 ~~~~~~ivVGT~~~~~ed~~~~GrI~vf~i~~vvpe~g~~~t~~kLkl~~~~---------~~~G~V~al~~~~g~Ll~a 343 (638)
...+.+++|+- ...+||++|++... .++++++..- ....|-+--|.=+|.++.+
T Consensus 92 ~~~r~~l~v~~--------l~s~~I~viD~~t~---------p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdGi~Vs~ 154 (462)
T 2ece_A 92 NIERRFLIVPG--------LRSSRIYIIDTKPN---------PREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDAIYISA 154 (462)
T ss_dssp TCCSCEEEEEB--------TTTCCEEEEECCSC---------TTSCEEEEEECHHHHHHHHCEEEEEEEEECSSCEEEEE
T ss_pred CccCCEEEEcc--------CCCCeEEEEECCCC---------CCCceeeeeechhhcccccCCCcccceeECCCeEEEEc
Q ss_pred ecC-------EEEEEEeeCCceeeeEEee----cceeEEEEeeecCEEEEee-------------------ccCcEEEEE
Q psy92 344 VGQ-------KIYIWQLKDNDLTGIAFID----TEVYIASMVSVKNLILVGD-------------------YARSIALLR 393 (638)
Q Consensus 344 vg~-------~l~v~~l~~~~L~~~a~~d----~~~~i~~i~~~~~~IlvgD-------------------~~~Sv~ll~ 393 (638)
.|+ .|.+++....++++.-..+ .-.|=....-.++.+++.+ .-+.|.++.
T Consensus 155 ~g~~~g~~~g~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D 234 (462)
T 2ece_A 155 LGNEEGEGPGGILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWD 234 (462)
T ss_dssp EEETTSCSCCEEEEECTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEE
T ss_pred CCCcCCCCCCeEEEEECCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEE
Q ss_pred EeccCCeEEEEeccCCCcceeeeecccCCCCCcccccccceeeeeeccccccccccccCCcccccccCCCceeEEEEe--
Q psy92 394 YQPEYRTLSLVARDYKPTQPNSKGYYAGNPSRGIIDGSLVWKFLQLSLGERLEICKKIGSKHNDILDEFSSMGFMISD-- 471 (638)
Q Consensus 394 ~~~~~~~l~~~arD~~~~~v~~~~~l~~~~~~~~vd~~~~~~~~~~~~gd~~~~~~r~~~~~~~~~~~~~~l~~l~aD-- 471 (638)
++. ......+.-.....-...+.|+ .+ .+....|+++.
T Consensus 235 ~~~-~k~~~tI~vg~~g~~P~~i~f~--------~~-------------------------------Pdg~~aYV~~e~~ 274 (462)
T 2ece_A 235 LRK-RKRIHSLTLGEENRMALELRPL--------HD-------------------------------PTKLMGFINMVVS 274 (462)
T ss_dssp TTT-TEEEEEEESCTTEEEEEEEEEC--------SS-------------------------------TTCCEEEEEEEEE
T ss_pred CCC-CcEeeEEecCCCCCccceeEee--------EC-------------------------------CCCCEEEEEEeee
Q ss_pred ---CCCcEEEEEeCC
Q psy92 472 ---KDKNVVLFMYQP 483 (638)
Q Consensus 472 ---~~~nl~v~~~~~ 483 (638)
-++++++|.++.
T Consensus 275 ~~~Lss~V~v~~~d~ 289 (462)
T 2ece_A 275 LKDLSSSIWLWFYED 289 (462)
T ss_dssp TTTCCEEEEEEEEET
T ss_pred ccCCCceEEEEEecC
No 209
>1qb2_A SRP54, human signal recognition particle 54 KD protein; alpha-helix, helix-turn-helix, signaling protein; 2.10A {Homo sapiens} SCOP: a.36.1.1 PDB: 1ry1_W* 2go5_W
Probab=29.36 E-value=42 Score=28.86 Aligned_cols=29 Identities=14% Similarity=0.235 Sum_probs=24.5
Q ss_pred CHHHHHHHHHHhCCCHHHHHHHHHHhhhc
Q psy92 606 SLGERLEICKKIGSKHNDILDELYDIEAL 634 (638)
Q Consensus 606 ~~~~q~~ia~~lg~~~~~i~~~l~~l~~~ 634 (638)
+.+++++||++.|++++|+.+.|...+..
T Consensus 74 ~~SR~~RIA~GSG~~v~eVn~LLkqf~~m 102 (109)
T 1qb2_A 74 QPGRIQRVARGSGVSTRDVQELLTQYTKF 102 (109)
T ss_dssp STHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred chHHHHHHHccCCCCHHHHHHHHHHHHHH
Confidence 35789999999999999999988876543
No 210
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=29.08 E-value=21 Score=28.51 Aligned_cols=39 Identities=15% Similarity=0.303 Sum_probs=30.6
Q ss_pred ehHHHHHHHcCC---HHHHHHHHHHhCCCHHHHHHHHHHhhh
Q psy92 595 DGSLVWKFLQLS---LGERLEICKKIGSKHNDILDELYDIEA 633 (638)
Q Consensus 595 DGdlle~fl~L~---~~~q~~ia~~lg~~~~~i~~~l~~l~~ 633 (638)
|-.+|+.+...+ .....+||+++|.+...|.+.|..|+.
T Consensus 16 ~~~IL~~L~~~~~~~~~t~~eLA~~Lgvs~~tV~~~L~~L~~ 57 (77)
T 1qgp_A 16 EQRILKFLEELGEGKATTAHDLSGKLGTPKKEINRVLYSLAK 57 (77)
T ss_dssp HHHHHHHHHHHCSSSCEEHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 455665555566 567799999999999999999988865
No 211
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=28.98 E-value=4.2e+02 Score=25.91 Aligned_cols=17 Identities=24% Similarity=0.178 Sum_probs=11.1
Q ss_pred CEEEEEEeeCCceeeeE
Q psy92 346 QKIYIWQLKDNDLTGIA 362 (638)
Q Consensus 346 ~~l~v~~l~~~~L~~~a 362 (638)
..|++|++..++...+.
T Consensus 168 ~~l~~~d~~~g~~~~l~ 184 (388)
T 3pe7_A 168 CRLMRVDLKTGESTVIL 184 (388)
T ss_dssp EEEEEEETTTCCEEEEE
T ss_pred ceEEEEECCCCceEEee
Confidence 46777887766655444
No 212
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=27.93 E-value=5.9e+02 Score=27.73 Aligned_cols=18 Identities=0% Similarity=-0.033 Sum_probs=14.0
Q ss_pred ccEEEEecCCCEEEEEEe
Q psy92 180 PHFLAYHLETKTYCIVTS 197 (638)
Q Consensus 180 p~ri~y~~~~~~~~V~~s 197 (638)
...++++|..+.++.+..
T Consensus 62 ~~~~~~SpDg~~la~~~~ 79 (719)
T 1z68_A 62 ASNYGLSPDRQFVYLESD 79 (719)
T ss_dssp CSEEEECTTSSEEEEEEE
T ss_pred eeeEEECCCCCeEEEEec
Confidence 678999999888776554
No 213
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=27.44 E-value=4.5e+02 Score=25.73 Aligned_cols=83 Identities=8% Similarity=0.124 Sum_probs=55.3
Q ss_pred ceEEEEEEeeCCc--eEEEcccc-CeeEEEec----CEEEEEEeeCCceeeeEEeecceeEEEEeeecCEEEEeeccCcE
Q psy92 317 KIKMIYAKEQKGP--VTAICHVA-GFLVTAVG----QKIYIWQLKDNDLTGIAFIDTEVYIASMVSVKNLILVGDYARSI 389 (638)
Q Consensus 317 kLkl~~~~~~~G~--V~al~~~~-g~Ll~avg----~~l~v~~l~~~~L~~~a~~d~~~~i~~i~~~~~~IlvgD~~~Sv 389 (638)
..+++.+..+.+. +..|.--. |+|+++.| ++|.++++...++...-.++...+...+...++.+++++-..+.
T Consensus 8 ~~~vv~~~p~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~g~~lyv~t~~~~~ 87 (266)
T 2iwa_A 8 IVEVLNEFPHDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLLNEKLYQVVWLKNI 87 (266)
T ss_dssp EEEEEEEEECCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEETTCSE
T ss_pred CceEEEEEECCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEeCCEEEEEEecCCE
Confidence 3445555555433 34554333 78999876 59999999988766544444555777777789999999987766
Q ss_pred EEEEEeccCCe
Q psy92 390 ALLRYQPEYRT 400 (638)
Q Consensus 390 ~ll~~~~~~~~ 400 (638)
++.|+.+..+
T Consensus 88 -v~viD~~t~~ 97 (266)
T 2iwa_A 88 -GFIYDRRTLS 97 (266)
T ss_dssp -EEEEETTTTE
T ss_pred -EEEEECCCCc
Confidence 4447765443
No 214
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=26.57 E-value=26 Score=28.30 Aligned_cols=40 Identities=15% Similarity=0.280 Sum_probs=30.9
Q ss_pred eehHHHHHHHcCC---HHHHHHHHHHhCCCHHHHHHHHHHhhh
Q psy92 594 IDGSLVWKFLQLS---LGERLEICKKIGSKHNDILDELYDIEA 633 (638)
Q Consensus 594 IDGdlle~fl~L~---~~~q~~ia~~lg~~~~~i~~~l~~l~~ 633 (638)
+|-.+|+.+.+.+ .-...+||+++|++...|.+.|..|+.
T Consensus 11 ~~~~IL~~L~~~~pg~~~t~~eLA~~Lgvsr~tV~~~L~~Le~ 53 (81)
T 1qbj_A 11 QEQRILKFLEELGEGKATTAHDLSGKLGTPKKEINRVLYSLAK 53 (81)
T ss_dssp HHHHHHHHHHHHCTTCCBCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 3555666555555 556789999999999999999998865
No 215
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=26.16 E-value=3.8e+02 Score=27.54 Aligned_cols=61 Identities=8% Similarity=0.033 Sum_probs=37.3
Q ss_pred ccCeeEEEec--CEEEEEEeeCCceeeeEEeecceeEEEEeeecCEEEEeeccCcEEEEEEecc
Q psy92 336 VAGFLVTAVG--QKIYIWQLKDNDLTGIAFIDTEVYIASMVSVKNLILVGDYARSIALLRYQPE 397 (638)
Q Consensus 336 ~~g~Ll~avg--~~l~v~~l~~~~L~~~a~~d~~~~i~~i~~~~~~IlvgD~~~Sv~ll~~~~~ 397 (638)
-+|.|+++-. .+|++|++..+++........... ..+...+++++++|....-.++.|+.+
T Consensus 140 ~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~ 202 (409)
T 3hrp_A 140 GNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFKGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKA 202 (409)
T ss_dssp STTEEEEEETTTTEEEEEETTTTEEEEEEETCCBCB-CEECTTSSEEEEEBSSTTCEEEEEEGG
T ss_pred CCCCEEEEecCCCcEEEEECCCCEEEEeeccCCCCc-eeEecCCCcEEEEecCCCceEEEEEcC
Confidence 3566666643 688888887776665443211122 334455788999998664456666654
No 216
>1mfq_C SRP54, signal recognition particle 54KDA protein; RNA-protein complex, A-minor motif, 3-helix junction, signaling protein/RNA complex; HET: CCC; 3.10A {Homo sapiens} SCOP: a.36.1.1
Probab=25.81 E-value=52 Score=29.13 Aligned_cols=28 Identities=14% Similarity=0.220 Sum_probs=24.3
Q ss_pred CHHHHHHHHHHhCCCHHHHHHHHHHhhh
Q psy92 606 SLGERLEICKKIGSKHNDILDELYDIEA 633 (638)
Q Consensus 606 ~~~~q~~ia~~lg~~~~~i~~~l~~l~~ 633 (638)
+.+++++||++.|++++||.+.|...+.
T Consensus 87 ~~SRk~RIA~GSG~~v~eVn~LLkqf~q 114 (129)
T 1mfq_C 87 QPGRIQRVARGSGVSTRDVQELLTQYTK 114 (129)
T ss_dssp CTHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred ChHHHHHHHccCCCCHHHHHHHHHHHHH
Confidence 4678999999999999999998887654
No 217
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=25.42 E-value=5.7e+02 Score=26.30 Aligned_cols=159 Identities=11% Similarity=0.081 Sum_probs=0.0
Q ss_pred EEEEEeeccCcc-------------------CCcccEEEEeecccCCCCcccceeEEEEEEEEeecCCCCccccCceEEE
Q psy92 261 LKNVSMEYEGTL-------------------SGLRGYIALGTNYNYSEDVTCRGRILLFDIIEVVPEPGQPLTKNKIKMI 321 (638)
Q Consensus 261 i~~v~l~~~~~~-------------------~~~~~~ivVGT~~~~~ed~~~~GrI~vf~i~~vvpe~g~~~t~~kLkl~ 321 (638)
++.+.+...+.. .|..++||=|. ..|.|.+|++.. ...++.+
T Consensus 159 V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS---------~D~TIkIWDl~T----------Gk~l~tL 219 (356)
T 2w18_A 159 VEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGTT---------IMNNIVIWNLKT----------GQLLKKM 219 (356)
T ss_dssp EEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEE---------TTSEEEEEETTT----------CCEEEEE
T ss_pred EEEEEECCCCceeeeeccCCCceeeEEeeccCCCCceEEEec---------CCCcEEEEECCC----------CcEEEEE
Q ss_pred --EEEeeCCceEEEccccCeeEEEec--------------CEEEEEEeeCCceeeeEEeec----ceeEEEEeeecCEEE
Q psy92 322 --YAKEQKGPVTAICHVAGFLVTAVG--------------QKIYIWQLKDNDLTGIAFIDT----EVYIASMVSVKNLIL 381 (638)
Q Consensus 322 --~~~~~~G~V~al~~~~g~Ll~avg--------------~~l~v~~l~~~~L~~~a~~d~----~~~i~~i~~~~~~Il 381 (638)
+...+.+.....-.-+|.++++.. .++++|+....++..+-.+.. .....+....+.+++
T Consensus 220 ~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~sg~~lA 299 (356)
T 2w18_A 220 HIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDVKDHCAA 299 (356)
T ss_dssp ECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEEETTEEE
T ss_pred cCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEccccCCCEEE
Q ss_pred EeeccCcEEEEEEeccCCeEEEEeccCCCcceeeeecccCCCCCcccccccceeeeeeccccccccccccCCcccccccC
Q psy92 382 VGDYARSIALLRYQPEYRTLSLVARDYKPTQPNSKGYYAGNPSRGIIDGSLVWKFLQLSLGERLEICKKIGSKHNDILDE 461 (638)
Q Consensus 382 vgD~~~Sv~ll~~~~~~~~l~~~arD~~~~~v~~~~~l~~~~~~~~vd~~~~~~~~~~~~gd~~~~~~r~~~~~~~~~~~ 461 (638)
.|..-+.|.+ |+-...++...-+......+..+.|= .|
T Consensus 300 SgS~DgTIkI--WDl~tGk~l~tL~gH~~~vvs~vafS--------PD-------------------------------- 337 (356)
T 2w18_A 300 AILTSGTIAI--WDLLLGQCTALLPPVSDQHWSFVKWS--------GT-------------------------------- 337 (356)
T ss_dssp EEETTSCEEE--EETTTCSEEEEECCC--CCCCEEEEC--------SS--------------------------------
T ss_pred EEcCCCcEEE--EECCCCcEEEEecCCCCCeEEEEEEC--------CC--------------------------------
Q ss_pred CCceeEEEEeCCCcEEEEEeC
Q psy92 462 FSSMGFMISDKDKNVVLFMYQ 482 (638)
Q Consensus 462 ~~~l~~l~aD~~~nl~v~~~~ 482 (638)
++ .++.+..|+++.++++.
T Consensus 338 G~--~LaSGS~D~TIklWd~~ 356 (356)
T 2w18_A 338 DS--HLLAGQKDGNIFVYHYS 356 (356)
T ss_dssp SS--EEEEECTTSCEEEEEEC
T ss_pred CC--EEEEEECCCcEEEecCC
No 218
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=25.41 E-value=46 Score=26.62 Aligned_cols=28 Identities=18% Similarity=0.177 Sum_probs=23.6
Q ss_pred CHHHHHHHHHHhCCCHHHHHHHHHHhhh
Q psy92 606 SLGERLEICKKIGSKHNDILDELYDIEA 633 (638)
Q Consensus 606 ~~~~q~~ia~~lg~~~~~i~~~l~~l~~ 633 (638)
..-.-.++|+.+++|...|.++|..++.
T Consensus 15 g~vsv~eLa~~l~VS~~TIRrdL~~Le~ 42 (78)
T 1xn7_A 15 GRMEAAQISQTLNTPQPMINAMLQQLES 42 (78)
T ss_dssp CSBCHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 4444578999999999999999999865
No 219
>1xmk_A Double-stranded RNA-specific adenosine deaminase; winged helix-turn-helix, RNA editing, interferon, ADAR1, hydrolase; 0.97A {Homo sapiens} SCOP: a.4.5.19
Probab=25.30 E-value=29 Score=28.04 Aligned_cols=37 Identities=27% Similarity=0.347 Sum_probs=29.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHhCCCHH-HHHHHHHHhhh
Q psy92 597 SLVWKFLQLSLGERLEICKKIGSKHN-DILDELYDIEA 633 (638)
Q Consensus 597 dlle~fl~L~~~~q~~ia~~lg~~~~-~i~~~l~~l~~ 633 (638)
.+|+....-......+||+.+|.+.. .+.+.|..|+.
T Consensus 15 ~IL~~Lk~~g~~ta~eiA~~Lgit~~~aVr~hL~~Le~ 52 (79)
T 1xmk_A 15 KICDYLFNVSDSSALNLAKNIGLTKARDINAVLIDMER 52 (79)
T ss_dssp HHHHHHHHTCCEEHHHHHHHHCGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCcCHHHHHHHcCCCcHHHHHHHHHHHHH
Confidence 34444445566678999999999999 99999998875
No 220
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=25.07 E-value=5.9e+02 Score=26.33 Aligned_cols=69 Identities=16% Similarity=0.256 Sum_probs=45.7
Q ss_pred EeeCCceEEEccccC-eeEEEecCEEEEEEeeCCceeeeEEeecceeEEEEeeecCEEEEeeccCcEEEEEEe
Q psy92 324 KEQKGPVTAICHVAG-FLVTAVGQKIYIWQLKDNDLTGIAFIDTEVYIASMVSVKNLILVGDYARSIALLRYQ 395 (638)
Q Consensus 324 ~~~~G~V~al~~~~g-~Ll~avg~~l~v~~l~~~~L~~~a~~d~~~~i~~i~~~~~~IlvgD~~~Sv~ll~~~ 395 (638)
.++.+ |++|+- +| .|+++.+..|.+|+..... ...........+.++....+-+++++.-.+|.++..+
T Consensus 85 ~~lp~-V~~l~f-d~~~L~v~~~~~l~v~dv~sl~-~~~~~~~~~~~v~~i~~~~p~~av~~~dG~L~v~dl~ 154 (388)
T 1xip_A 85 KEIPD-VIFVCF-HGDQVLVSTRNALYSLDLEELS-EFRTVTSFEKPVFQLKNVNNTLVILNSVNDLSALDLR 154 (388)
T ss_dssp EECTT-EEEEEE-ETTEEEEEESSEEEEEESSSTT-CEEEEEECSSCEEEEEECSSEEEEEETTSEEEEEETT
T ss_pred eeCCC-eeEEEE-CCCEEEEEcCCcEEEEEchhhh-ccCccceeecceeeEEecCCCEEEEECCCCEEEEEcc
Confidence 35777 999987 54 6778889999999987433 2222222233455666666557777777888777654
No 221
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=24.62 E-value=7e+02 Score=27.05 Aligned_cols=198 Identities=11% Similarity=0.044 Sum_probs=0.0
Q ss_pred CceeEEecCCCCeEEEEecCCceEEEecCCCCCccEEecccCCCCCCc-EEEEEcCCeEEEEEeCCCCCCC--CCceeEE
Q psy92 97 GYQGVFLCGPHPAWLFLTSRGELRAHPMTIDGPVSTLAPFHNVNCPRG-FLYFNAKSELRISVLPTHLSYD--APWPVRK 173 (638)
Q Consensus 97 g~~~Vf~~g~~P~~i~~~~~~~l~~~pl~~~~~v~~~a~F~~~~~~~g-fl~~~~~~~L~I~~l~~~~~~~--~~~~~r~ 173 (638)
+...+++..+.-.+....-...-.+..+.....+.+++ |+ |+| ++|+++.+. .|..++. . ..-.+++
T Consensus 166 ~~~~~V~~~~~~~V~viD~~t~~v~~~i~~g~~p~~v~-~S----pDGr~lyv~~~dg-~V~viD~----~~~t~~~v~~ 235 (567)
T 1qks_A 166 ENLFSVTLRDAGQIALIDGSTYEIKTVLDTGYAVHISR-LS----ASGRYLFVIGRDG-KVNMIDL----WMKEPTTVAE 235 (567)
T ss_dssp GGEEEEEETTTTEEEEEETTTCCEEEEEECSSCEEEEE-EC----TTSCEEEEEETTS-EEEEEET----TSSSCCEEEE
T ss_pred CceEEEEeCCCCeEEEEECCCCeEEEEEeCCCCccceE-EC----CCCCEEEEEcCCC-eEEEEEC----CCCCCcEeEE
Q ss_pred EeCCCcccEEEEe----cCCCEEEEEEeeecCCCcccccCCccccccCCCCCCCCCCCcccccEEEEEeCCCceeeccee
Q psy92 174 VPLKCTPHFLAYH----LETKTYCIVTSTAEPSTDYYKFNGEDKELVTDPRDSRFIPPLVSQFHVSLFSPFSWEEIPQTN 249 (638)
Q Consensus 174 ipL~~tp~ri~y~----~~~~~~~V~~s~~~~~~~~~~~~~e~~e~~~~~~~~~~~~p~~~~~~i~lid~~t~~~i~~~~ 249 (638)
|+.+..|+.++++ |+.+.++|+. .....+.++|..+++.+. .
T Consensus 236 i~~G~~P~~ia~s~~~~pDGk~l~v~n--------------------------------~~~~~v~ViD~~t~~~~~--~ 281 (567)
T 1qks_A 236 IKIGSEARSIETSKMEGWEDKYAIAGA--------------------------------YWPPQYVIMDGETLEPKK--I 281 (567)
T ss_dssp EECCSEEEEEEECCSTTCTTTEEEEEE--------------------------------EETTEEEEEETTTCCEEE--E
T ss_pred EecCCCCceeEEccccCCCCCEEEEEE--------------------------------ccCCeEEEEECCCCcEEE--E
Q ss_pred ecCCC-----ceeEeEEEEEEeeccCccCCcccEEEEeecccCCCCcccceeEEEEEEEEeecCCCCccccCceEEEEEE
Q psy92 250 FPLHE-----WEHVLCLKNVSMEYEGTLSGLRGYIALGTNYNYSEDVTCRGRILLFDIIEVVPEPGQPLTKNKIKMIYAK 324 (638)
Q Consensus 250 ~~l~~-----~E~v~si~~v~l~~~~~~~~~~~~ivVGT~~~~~ed~~~~GrI~vf~i~~vvpe~g~~~t~~kLkl~~~~ 324 (638)
+.... .|..-......+..+. ....++|-. ...|.|.++++.. .+-..+...
T Consensus 282 i~~~~~~~~~~~~~p~~rva~i~~s~----~~~~~vv~~--------~~~g~v~~vd~~~-----------~~~~~v~~i 338 (567)
T 1qks_A 282 QSTRGMTYDEQEYHPEPRVAAILASH----YRPEFIVNV--------KETGKILLVDYTD-----------LNNLKTTEI 338 (567)
T ss_dssp EECCEECTTTCCEESCCCEEEEEECS----SSSEEEEEE--------TTTTEEEEEETTC-----------SSEEEEEEE
T ss_pred EeccccccccccccCCCceEEEEEcC----CCCEEEEEe--------cCCCeEEEEecCC-----------Cccceeeee
Q ss_pred eeCCceE--EEccccCeeEEEec--CEEEEEEeeCCceeee
Q psy92 325 EQKGPVT--AICHVAGFLVTAVG--QKIYIWQLKDNDLTGI 361 (638)
Q Consensus 325 ~~~G~V~--al~~~~g~Ll~avg--~~l~v~~l~~~~L~~~ 361 (638)
+....++ ++..-+.++++|.+ ++|.+++....++...
T Consensus 339 ~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~ 379 (567)
T 1qks_A 339 SAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAI 379 (567)
T ss_dssp ECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEE
T ss_pred eccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEE
No 222
>3k2a_A Homeobox protein MEIS2; homeobox domain, DNA-binding, transcription, nucleus, phosphoprotein, DNA bindi protein; 1.95A {Homo sapiens} SCOP: a.4.1.1
Probab=24.32 E-value=1.3e+02 Score=22.89 Aligned_cols=37 Identities=8% Similarity=0.129 Sum_probs=28.4
Q ss_pred HHHHHHHc-------CCHHHHHHHHHHhCCCHHHHHHHHHHhhh
Q psy92 597 SLVWKFLQ-------LSLGERLEICKKIGSKHNDILDELYDIEA 633 (638)
Q Consensus 597 dlle~fl~-------L~~~~q~~ia~~lg~~~~~i~~~l~~l~~ 633 (638)
++|+.++. .+..++.++|+++|.+..+|.....+-|+
T Consensus 11 ~~L~~~f~~h~~~pyp~~~~r~~La~~~~l~~~qV~~WFqNrR~ 54 (67)
T 3k2a_A 11 NIMRAWLFQHLTHPYPSEEQKKQLAQDTGLTILQVNNWFINARR 54 (67)
T ss_dssp HHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCCCCHHHHHHHHHHhCcCHHHhhhhhHHHHH
Confidence 45555555 68899999999999999998776665443
No 223
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=22.89 E-value=66 Score=25.64 Aligned_cols=25 Identities=12% Similarity=0.089 Sum_probs=22.2
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHhhh
Q psy92 609 ERLEICKKIGSKHNDILDELYDIEA 633 (638)
Q Consensus 609 ~q~~ia~~lg~~~~~i~~~l~~l~~ 633 (638)
.-.|||+.+|.|...|.++|..|+.
T Consensus 26 sv~EIa~~lgvS~~TVrr~L~~Le~ 50 (77)
T 2jt1_A 26 KTRDIADAAGLSIYQVRLYLEQLHD 50 (77)
T ss_dssp EHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3689999999999999999999875
No 224
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=21.85 E-value=2.7e+02 Score=28.60 Aligned_cols=68 Identities=12% Similarity=0.089 Sum_probs=46.8
Q ss_pred EEEEeCCCCCCCCCceeEEEeCCCcccEEEEecCCCEEEEEEeeecCCCcccccCCccccccCCCCCCCCCCCcccccEE
Q psy92 155 RISVLPTHLSYDAPWPVRKVPLKCTPHFLAYHLETKTYCIVTSTAEPSTDYYKFNGEDKELVTDPRDSRFIPPLVSQFHV 234 (638)
Q Consensus 155 ~I~~l~~~~~~~~~~~~r~ipL~~tp~ri~y~~~~~~~~V~~s~~~~~~~~~~~~~e~~e~~~~~~~~~~~~p~~~~~~i 234 (638)
.+..||. +..-.+.+||++..| .++++|..+.+.|..+..... ..+ .....|
T Consensus 47 ~vsvID~----~t~~v~~~i~vG~~P-~i~~spDg~~lyVan~~~~r~-----~~G------------------~~~~~V 98 (368)
T 1mda_H 47 ENWVSCA----GCGVTLGHSLGAFLS-LAVAGHSGSDFALASTSFARS-----AKG------------------KRTDYV 98 (368)
T ss_dssp EEEEEET----TTTEEEEEEEECTTC-EEEECTTSSCEEEEEEEETTT-----TSS------------------SEEEEE
T ss_pred eEEEEEC----CCCeEEEEEeCCCCC-ceEECCCCCEEEEEccccccc-----ccC------------------CCCCEE
Confidence 5556665 335678999999999 899999998888776432100 000 123579
Q ss_pred EEEeCCCceeecceeecC
Q psy92 235 SLFSPFSWEEIPQTNFPL 252 (638)
Q Consensus 235 ~lid~~t~~~i~~~~~~l 252 (638)
.+||+.+++++. ++.+
T Consensus 99 sviD~~T~~vv~--~I~v 114 (368)
T 1mda_H 99 EVFDPVTFLPIA--DIEL 114 (368)
T ss_dssp EEECTTTCCEEE--EEEE
T ss_pred EEEECCCCCEEE--EEEC
Confidence 999999999876 5554
No 225
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=21.04 E-value=5e+02 Score=24.00 Aligned_cols=73 Identities=10% Similarity=-0.062 Sum_probs=40.9
Q ss_pred CceEEEcc-ccCeeEEEe--cCEEEEEEeeCCceeeeEEeecceeEEEEeee-cCEEEEeeccCcEEEEEEeccCCeEEE
Q psy92 328 GPVTAICH-VAGFLVTAV--GQKIYIWQLKDNDLTGIAFIDTEVYIASMVSV-KNLILVGDYARSIALLRYQPEYRTLSL 403 (638)
Q Consensus 328 G~V~al~~-~~g~Ll~av--g~~l~v~~l~~~~L~~~a~~d~~~~i~~i~~~-~~~IlvgD~~~Sv~ll~~~~~~~~l~~ 403 (638)
..+++++. -+|+|+++. +..|+.|+. ++++.....-.....+..|... ++.++++|...+ .+.+|+. ..++..
T Consensus 146 ~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~-~i~~~~~-~g~~~~ 222 (300)
T 2qc5_A 146 SYPAFITLGSDNALWFTENQNNSIGRITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGN-KIGRITT-TGEISE 222 (300)
T ss_dssp CCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTT-EEEEECT-TCCEEE
T ss_pred CCceeEEECCCCCEEEEecCCCeEEEECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEccCCC-EEEEEcC-CCcEEE
Confidence 45666653 357787776 568888877 5555432211112345566554 356788886543 3455665 334433
No 226
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=20.87 E-value=8.7e+02 Score=26.80 Aligned_cols=73 Identities=14% Similarity=0.196 Sum_probs=47.7
Q ss_pred CceEEEcc-ccCeeEEEecCEEEEEEeeCCceeeeEEeecceeEEEEeeecCEEEEeeccCcEEEEEEeccCCeEEEE
Q psy92 328 GPVTAICH-VAGFLVTAVGQKIYIWQLKDNDLTGIAFIDTEVYIASMVSVKNLILVGDYARSIALLRYQPEYRTLSLV 404 (638)
Q Consensus 328 G~V~al~~-~~g~Ll~avg~~l~v~~l~~~~L~~~a~~d~~~~i~~i~~~~~~IlvgD~~~Sv~ll~~~~~~~~l~~~ 404 (638)
..|++|.. -+|+|.++...-|+.|+...+++.... ......|.++...++.|.||... .+++|+.+..++..+
T Consensus 63 ~~i~~i~~d~~g~lWigT~~Gl~~yd~~~~~f~~~~-~~~~~~i~~i~~~~g~lWigt~~---Gl~~~~~~~~~~~~~ 136 (758)
T 3ott_A 63 TRIYCGVIIDNTYLYMGTDNGILVYNYRADRYEQPE-TDFPTDVRTMALQGDTLWLGALN---GLYTYQLQSRKLTSF 136 (758)
T ss_dssp SCEEEEEEETTTEEEEEETTEEEEEETTTTEECCCS-CCCCSCEEEEEEETTEEEEEETT---EEEEEETTTCCEEEE
T ss_pred ceEEEEEEcCCCcEEEEeCCCeEEEeCCCCEEECcc-cCCCceEEEEEecCCcEEEEcCC---cceeEeCCCCeEEEe
Confidence 45777653 468999999999999988765554311 11123455555567889999754 467787766666655
No 227
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=20.85 E-value=7e+02 Score=25.70 Aligned_cols=41 Identities=5% Similarity=0.046 Sum_probs=25.5
Q ss_pred cCEEEEeeccCcEEEEEEeccCCeEEEEeccCCCcceeeeec
Q psy92 377 KNLILVGDYARSIALLRYQPEYRTLSLVARDYKPTQPNSKGY 418 (638)
Q Consensus 377 ~~~IlvgD~~~Sv~ll~~~~~~~~l~~~arD~~~~~v~~~~~ 418 (638)
++.|+++|.... .+++|+.+...+..+.......|...+.+
T Consensus 237 ~g~lyv~d~~~~-~V~~~~~~~~~~~~~~~~~~~~~P~gia~ 277 (430)
T 3tc9_A 237 NGELYFNSWNAG-QVFRYDFTTQETTPLFTIQDSGWEFHIQF 277 (430)
T ss_dssp TCCEEEEETTTT-EEEEEETTTTEEEEEEECSSSSCCEEEEE
T ss_pred CCEEEEEECCCC-EEEEEECCCCcEEEEEEcCCCCcceeEEE
Confidence 578999998766 57788887666644443333334444444
No 228
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=20.79 E-value=59 Score=26.67 Aligned_cols=29 Identities=17% Similarity=0.134 Sum_probs=24.0
Q ss_pred CHHHHHHHHHHhCCCHHHHHHHHHHhhhc
Q psy92 606 SLGERLEICKKIGSKHNDILDELYDIEAL 634 (638)
Q Consensus 606 ~~~~q~~ia~~lg~~~~~i~~~l~~l~~~ 634 (638)
..-.-.++|+.+++|...|.++|..|+..
T Consensus 15 g~vsv~eLA~~l~VS~~TIRrDL~~Le~~ 43 (87)
T 2k02_A 15 GRMEAKQLSARLQTPQPLIDAMLERMEAM 43 (87)
T ss_dssp CSEEHHHHHHHTTCCHHHHHHHHHHHHTT
T ss_pred CCCcHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 44445789999999999999999998753
No 229
>1x2m_A LAG1 longevity assurance homolog 6; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.4.1.1
Probab=20.42 E-value=1.8e+02 Score=22.25 Aligned_cols=37 Identities=8% Similarity=-0.025 Sum_probs=29.1
Q ss_pred eeehHHHHHHH-c----CCHHHHHHHHHHhCCCHHHHHHHHH
Q psy92 593 IIDGSLVWKFL-Q----LSLGERLEICKKIGSKHNDILDELY 629 (638)
Q Consensus 593 ~IDGdlle~fl-~----L~~~~q~~ia~~lg~~~~~i~~~l~ 629 (638)
.-+-..||.++ . ++..++.+||+++|.+..+|.-...
T Consensus 9 ~~~~~~LE~~F~~~~~yp~~~~r~~LA~~l~LterQVkvWFq 50 (64)
T 1x2m_A 9 AQPNAILEKVFTAITKHPDEKRLEGLSKQLDWDVRSIQRWFR 50 (64)
T ss_dssp SCHHHHHHHHHHTTCSSCCHHHHHHHHHHHCSCHHHHHHHHH
T ss_pred chHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHHHHHHH
Confidence 44567788877 3 6788899999999999998865544
Done!