RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy92
(638 letters)
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision
repair, xeroderma pigmentosum, cytoplasm, DNA repair;
HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A*
3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A*
3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A
2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Length = 1158
Score = 287 bits (735), Expect = 7e-85
Identities = 99/570 (17%), Positives = 198/570 (34%), Gaps = 90/570 (15%)
Query: 83 GVRISQMRYFSNIAGYQGVFLCGPHPAWLFLTSRGELRAHPMTIDGPVSTLAPFHNVNCP 142
G + + +R F +++ VF C P + +S +L + + V+ + P ++ P
Sbjct: 650 GTQPTVLRTFRSLSTT-NVFACSDRP-TVIYSSNHKLVFSNVNLK-EVNYMCPLNSDGYP 706
Query: 143 RGFLYFNAKSELRISVLPTHLSYDAPWPVRKVPLKCTPHFLAYHLETKTYCIVTSTAEPS 202
N S L I + +R VPL +P + Y ++ + +++S E
Sbjct: 707 DSLALAN-NSTLTIG----TIDEIQKLHIRTVPLYESPRKICYQEVSQCFGVLSSRIEVQ 761
Query: 203 TDYYKFNGEDKELVTDPRD----------------SRFIPPLVSQFHVSLFSPFSWEEIP 246
T V ++ + ++E +
Sbjct: 762 DTSGGTTALRPSASTQALSSSVSSSKLFSSSTAPHETSFGEEVEVHNLLIIDQHTFEVLH 821
Query: 247 QTNFPLHEWEHVLCLKNVSMEYEGTLSGLRGYIALGTNYNYSEDVTC-RGRILLFDIIEV 305
+ E+ L L + + + Y +GT Y E+ +GRI++F
Sbjct: 822 A--HQFLQNEYALSLVSCKLGKDPNT-----YFIVGTAMVYPEEAEPKQGRIVVFQY--- 871
Query: 306 VPEPGQPLTKNKIKMIYAKEQKGPVTAICHVAGFLVTAVGQKIYIWQL-KDNDLTGIAFI 364
+ K++ + KE KG V ++ G L+ ++ + +++ + +L
Sbjct: 872 --------SDGKLQTVAEKEVKGAVYSMVEFNGKLLASINSTVRLYEWTTEKELRTECNH 923
Query: 365 DTEVYIASMVSVKNLILVGDYARSIALLRYQPEYRTLSLVARDYKPTQPNSKGYYAGNPS 424
+ + + + ILVGD RS+ LL Y+P +ARD+ P ++
Sbjct: 924 YNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMSA--------- 974
Query: 425 RGIIDGSLVWKFLQLSLGERLEICKKIGSKHNDILDEFSSMGFMISDKDKNVVLFMYQPE 484
+ILD+ + +G + N+ +
Sbjct: 975 -------------------------------VEILDDDNFLGA---ENAFNLFVCQKDSA 1000
Query: 485 ARESNGGHRLIKKTDFHLGQHVNTFFKIRCKPSSISDAPGARSRFLTWYASLDGALGFFL 544
A L + FHLG+ VN F ++ + ++ + +++G +G
Sbjct: 1001 ATTDEERQHLQEVGLFHLGEFVNVFCHGSLVMQNLGETSTP-TQGSVLFGTVNGMIGLVT 1059
Query: 545 PLPEKNYRRLLMLQNVMVTHTSHTGGLNPRAFRTYKGKGYYAGNPSRGIIDGSLVWKFLQ 604
L E Y LL +QN + G + +R++ P+ G IDG L+ FL
Sbjct: 1060 SLSESWYNLLLDMQNRLNKVIKSVGKIEHSFWRSF--HTERKTEPATGFIDGDLIESFLD 1117
Query: 605 LSLGERLEICKKIGSKHNDILDELYDIEAL 634
+S + E+ + + + L
Sbjct: 1118 ISRPKMQEVVANLQYDDGSGMKREATADDL 1147
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 58.9 bits (142), Expect = 4e-09
Identities = 57/324 (17%), Positives = 100/324 (30%), Gaps = 121/324 (37%)
Query: 1 MGNFRSH---SPSAMDETIVQELLTVSLGLHGNRPLLLVRTQHELLIYQAFRHPKGALKL 57
+G R + +++ +I+++ L + G+ P+L +
Sbjct: 306 IG-VRCYEAYPNTSLPPSILEDSLENNEGVPS--PMLSIS---------------N---- 343
Query: 58 RFKKLKVLFVSDRSKRANEQPGLPRGVRISQMRYFSNIAGYQGVFLCGPHPAWLFLTSRG 117
L V D + N LP G ++ S + G + + + GP P L+ +
Sbjct: 344 ----LTQEQVQDYVNKTNSH--LPAGKQV----EISLVNGAKNLVVSGP-PQSLYGLNL- 391
Query: 118 ELRAH--PMTID-----------------GPVSTLAPFHNVNCPRGFLYFNAKSELRISV 158
LR P +D PV+ +PFH L A + +
Sbjct: 392 TLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVA--SPFH---SH---LLVPASDLINKDL 443
Query: 159 LPTHLSYDAPWPVRKVPLKCTPHFLAYHLETKTYCIVTSTAEPSTDYYKFNGED-KELVT 217
+ ++S++A ++ P V T F+G D + L
Sbjct: 444 VKNNVSFNAK------DIQI-P--------------VYDT---------FDGSDLRVL-- 471
Query: 218 DPRDSRFIPPLVSQFHVSLFSPFSWEEIPQTNFPLHEWEHVLCL---------KNVSMEY 268
+V + P WE T F H+L
Sbjct: 472 ---SGSISERIVDCI---IRLPVKWETT--TQFKAT---HILDFGPGGASGLGVLTHRNK 520
Query: 269 EGTLSGLRGYIALGT-NYNYSEDV 291
+GT G+R I GT + N +D
Sbjct: 521 DGT--GVR-VIVAGTLDINPDDDY 541
Score = 43.1 bits (101), Expect = 3e-04
Identities = 61/333 (18%), Positives = 97/333 (29%), Gaps = 132/333 (39%)
Query: 181 HFLAYHLETKTYCIVTSTAEPSTDYYK-------------------------------FN 209
H LA L + + T E +Y F
Sbjct: 102 HALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFG 161
Query: 210 G----ED--KELVTDPRD-----SRFIPPLVSQFHVSLF----SPFSWEEIPQTNFPLHE 254
G +D +EL RD + L+ +L + E++ + E
Sbjct: 162 GQGNTDDYFEEL----RDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILE 217
Query: 255 W---------EHVLCLKNVSMEYEGTLSGLRGYIALGTNYNYSEDVTCRGRILLFDIIEV 305
W + L +S L G+ I L +Y VT ++L F
Sbjct: 218 WLENPSNTPDKDYLLSIPISC----PLIGV---IQLA---HYV--VTA--KLLGFT---- 259
Query: 306 VPEPGQPLTKNKIKMIYAKEQKGPVTAICHVAGFLVTAVGQKIYIWQLKDNDLTGIAFID 365
PG+ KG A H G LVTAV IA D
Sbjct: 260 ---PGE----------LRSYLKG---ATGHSQG-LVTAV---------------AIAETD 287
Query: 366 T--EVYIASMVSVKNLILVGDYARSIALLRYQPEYRTLSLVARDYKPTQPNSKGYYAGNP 423
+ +++ ++ L +G +R Y SL + + N++ G P
Sbjct: 288 SWESFFVSVRKAITVLFFIG--------VRCYEAYPNTSLPPSILEDSLENNE----GVP 335
Query: 424 S-----RGIIDGSL---VWKF-LQLSLGERLEI 447
S + + V K L G+++EI
Sbjct: 336 SPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEI 368
Score = 37.7 bits (87), Expect = 0.016
Identities = 35/207 (16%), Positives = 67/207 (32%), Gaps = 71/207 (34%)
Query: 300 FDIIEVV------------PEPGQPLTKNKIKMIYAKEQKGPV-------------TAIC 334
F I+++V E G+ + +N MI+ G + T+
Sbjct: 1659 FSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYT 1718
Query: 335 --HVAGFL-VTAVGQ------KIYIWQ-LKDNDLTGIAFIDTEVYIA--S------MVSV 376
G L T Q + ++ LK G+ I + A S + S+
Sbjct: 1719 FRSEKGLLSATQFTQPALTLMEKAAFEDLKSK---GL--IPADATFAGHSLGEYAALASL 1773
Query: 377 KNLILVGDYARSIALLRYQPEYR---TLSLVARDYKPTQPNSKGYYAGNPSRGIIDGSLV 433
+++ + ++ Y R V RD ++ G A NP R S
Sbjct: 1774 ADVMSIESLVE---VVFY----RGMTMQVAVPRD--ELGRSNYGMIAINPGRVAASFSQ- 1823
Query: 434 WKFLQLSLGERLE-ICKKIGSKHNDIL 459
E L+ + +++G + ++
Sbjct: 1824 ---------EALQYVVERVGKRTGWLV 1841
Score = 36.6 bits (84), Expect = 0.030
Identities = 48/283 (16%), Positives = 90/283 (31%), Gaps = 109/283 (38%)
Query: 171 VRKVPLKCTPHF--------------LAYHL----ETKTYCIVTSTAEPSTDYYKFNGED 212
V P+ T HF + + + KT I E ST Y F E
Sbjct: 1665 VINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTS-YTFRSEK 1723
Query: 213 KEL-VTDPRDSRFIPP---LVSQFHVSLFSPFSWEEIPQTNFPL------HEWEHVLCLK 262
L T +F P L+ + F + + P H
Sbjct: 1724 GLLSAT-----QFTQPALTLME---KAAFE--DLKS--KGLIPADATFAGH--------- 1762
Query: 263 NVSM-EYEGTLSGLRGYIALGTNYNYSED----VTCRGRIL------------LFDIIEV 305
S+ EY L+ L +++ E V RG + + +I +
Sbjct: 1763 --SLGEY-AALASLADVMSI-------ESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAI 1812
Query: 306 VPEPGQPLTKNKIKMIYAKEQ-KGPVTAICHVAGFLVTAVGQKIYIWQLKDNDLTGIAFI 364
P ++ +++E + V + G+LV V N +
Sbjct: 1813 NP--------GRVAASFSQEALQYVVERVGKRTGWLVEIVN---------YN-------V 1848
Query: 365 DTEVYIAS--MVSVKNLILVGDY--ARSIALLRYQPEYRTLSL 403
+ + Y+A+ + ++ + V ++ + I ++ Q ++LSL
Sbjct: 1849 ENQQYVAAGDLRALDTVTNVLNFIKLQKIDIIELQ---KSLSL 1888
Score = 35.8 bits (82), Expect = 0.051
Identities = 31/175 (17%), Positives = 49/175 (28%), Gaps = 69/175 (39%)
Query: 465 MGFMISDKDKNVVLFMYQ--PEARESNGGHRLIKKTDFHLGQHVNTFFKI----RCKPSS 518
MG D +Y+ A++ + + D H F I P +
Sbjct: 1631 MG-----MD------LYKTSKAAQD------VWNRADNHFKDTYG--FSILDIVINNPVN 1671
Query: 519 ISDAPGA------RSRF--LTWYASLDGALGFFLPLPEKNYR-RLLML--QNVMVTHTSH 567
++ G R + + + +DG L E N + +++ T
Sbjct: 1672 LTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQF 1731
Query: 568 TGGLNPR-------AFRTYKGKG------YYAGNPSRGIIDGSLVWKFLQLSLGE 609
T P AF K KG +AG SLGE
Sbjct: 1732 T---QPALTLMEKAAFEDLKSKGLIPADATFAG-----------------HSLGE 1766
Score = 33.9 bits (77), Expect = 0.24
Identities = 54/342 (15%), Positives = 100/342 (29%), Gaps = 114/342 (33%)
Query: 308 EPGQP--LTKNKIKMIYAKEQKGPVTAICHVAGFLVTAVGQKIYIWQLKDNDL-TGIAFI 364
EP P L + + + + V V +T L+ ND+ A +
Sbjct: 53 EPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCY----LEGNDIHALAAKL 108
Query: 365 DTEVYIASMVSVKNLILVGDYARSIALLRYQPEYRTLSLVARDYKPTQPNSKGYYA---- 420
E ++V K LI +Y + + + + ++ S + R + A
Sbjct: 109 LQEN-DTTLVKTKELIK--NYITARIMAKRPFDKKSNSALFRA---VGEGNAQLVAIFGG 162
Query: 421 -GNPSRGIIDGSLVWKFLQLSLGERLEICKKIGSKHNDILDEFSSMGFMISDKDKNVVLF 479
GN +D +E L+
Sbjct: 163 QGNT--------------------------------DDYFEELRD-------------LY 177
Query: 480 -MYQPEARESNGGHRLIKKTDFHLGQHVNTFFKIRCKPSSISDAPGARSR---FLTWYAS 535
Y + LIK + L + + + DA ++ L W
Sbjct: 178 QTYHVLVGD------LIKFSAETLSELI----------RTTLDAEKVFTQGLNILEW--- 218
Query: 536 LDGALGFFLPLPEKNYRR----------LLMLQNVMVTHTSHTGGLNPRAFRTY-KGKGY 584
L+ P+K+Y ++ L + +VT G P R+Y KG
Sbjct: 219 LENPS----NTPDKDYLLSIPISCPLIGVIQLAHYVVTA--KLLGFTPGELRSYLKG--- 269
Query: 585 YAGNPSRGIIDGSLV-----WK-FLQLSLGERLEICKKIGSK 620
A S+G++ + W+ F + + + IG +
Sbjct: 270 -ATGHSQGLVTAVAIAETDSWESFFVSVR-KAITVLFFIGVR 309
Score = 31.6 bits (71), Expect = 1.1
Identities = 35/201 (17%), Positives = 51/201 (25%), Gaps = 86/201 (42%)
Query: 1 MG-NFRSHSPSA------MDE-----------TIVQE---LLTVSLGLHGNRPLLLVRTQ 39
MG + S +A D IV LT+ G + + R
Sbjct: 1631 MGMDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRI---REN 1687
Query: 40 HELLIYQA-----------------------FRHPKGALKLRFKKLKVLFVSDRSKRANE 76
+ +I++ FR KG L
Sbjct: 1688 YSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSA---------------TQFT 1732
Query: 77 QPGLPRGVRISQMRYFSNIAGY--QGVFLCGPHPAWLFLTSRGE---L--RAHPMTIDGP 129
QP L + + + G G H S GE L A M+I+
Sbjct: 1733 QPAL-TLMEKAAFEDLKS-KGLIPADATFAG-H-------SLGEYAALASLADVMSIESL 1782
Query: 130 VSTLAPFHNVNCPRGFLYFNA 150
V + F+ RG A
Sbjct: 1783 VEVV--FY-----RGMTMQVA 1796
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 45.6 bits (107), Expect = 5e-05
Identities = 98/705 (13%), Positives = 193/705 (27%), Gaps = 246/705 (34%)
Query: 10 SAMDETIVQELLTVSLGLHGNRPLL--LVRTQHELLIYQAFRHPKGALKLRFKKLKVLFV 67
S + + + ++ + G L L+ Q E + Q F + L++ +K F+
Sbjct: 44 SILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEE--MVQKFV--EEVLRINYK-----FL 94
Query: 68 SDRSKRANEQPGLPRGVRISQM-RYFSNIAGYQGVFLCGPHPAWLFLTSRGELRAHP-MT 125
K QP + + I Q R +++ + + P + ELR +
Sbjct: 95 MSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVL 154
Query: 126 IDGPVSTLAPFHNVNCPRGFLYFNAKSELRISVLPTHLSYDAPWPVRKVPLKCTPHFLAY 185
IDG + G K+ + + V ++C F +
Sbjct: 155 IDGVL-------------GS----GKTWVALDVC------------LSYKVQCKMDFKIF 185
Query: 186 HLETKTYCIVTSTAEPSTD-YYKFNGEDKELVTDPRDSRFIPPLVSQFHVSLFSPFSWEE 244
L K + E Y+ + D L +
Sbjct: 186 WLNLKNCNSPETVLEMLQKLLYQIDPNWTSRS----DHSSNIKL----------RIHSIQ 231
Query: 245 IPQTNFPLHEWEHVLCL---KNVSMEYEGTLSGLRGYIALGTNYNYSEDVTCRGRILL-- 299
L + CL NV + +++C+ ILL
Sbjct: 232 AELRRL-LKSKPYENCLLVLLNVQ--NAKAWNAF--------------NLSCK--ILLTT 272
Query: 300 -----FDII-------EVVPEPGQPLTKNKIKMIYAK-----EQKGPVTAICHVAGFLVT 342
D + + LT +++K + K Q P ++
Sbjct: 273 RFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREV-LTTNPRRLS 331
Query: 343 AVGQKI--------YIWQLKDNDLTGI--AFIDT------------------EVYIASMV 374
+ + I + + LT I + ++ +I +++
Sbjct: 332 IIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTIL 391
Query: 375 ----------SVKNLILVGDYARSIALLRYQPEYRTLSL--VARDYKPTQPNSKGYYAGN 422
S +++ + S L+ QP+ T+S+ + + K N
Sbjct: 392 LSLIWFDVIKSDVMVVVNKLHKYS--LVEKQPKESTISIPSIYLELKVKLENEY------ 443
Query: 423 PSRGIIDGSLVWKFLQLSLGERLEICKKIGSKHNDILDEFSSMGFMISDKDKNVVLFMYQ 482
+ H I+D Y
Sbjct: 444 ------------------------------ALHRSIVDH-------------------YN 454
Query: 483 PEARESNGGHRLIKKTD----FHLGQHVNTFFKIRCKPSSISDAPGARSRFLTWYASLDG 538
+ + + D H+G H+ + P + F + LD
Sbjct: 455 I-PKTFDSDDLIPPYLDQYFYSHIGHHLKN-----------IEHPERMTLFRMVF--LD- 499
Query: 539 ALGFFLPLPEKNYRRLLMLQNVMVTHTSHTGGLNPRA-FRTYKGKGYYAGN-PSRGIIDG 596
F L +K +++ + LN + Y K Y N P +
Sbjct: 500 -FRF---LEQK-------IRHDSTAWNASGSILNTLQQLKFY--KPYICDNDPKYERLVN 546
Query: 597 SLVWKFLQLSLGERLEICKKIGSKHNDIL--------DELYDIEA 633
+++ FL + E L I SK+ D+L + +++ EA
Sbjct: 547 AIL-DFLP-KIEENL-----ICSKYTDLLRIALMAEDEAIFE-EA 583
Score = 42.5 bits (99), Expect = 5e-04
Identities = 61/395 (15%), Positives = 102/395 (25%), Gaps = 119/395 (30%)
Query: 300 FDIIEVVPEPGQPLTKNKIKMIYAKEQKGPVTA-------ICH-----VAGFLVTAVGQK 347
FD +V P L+K +I I K V+ + V F+ + +
Sbjct: 33 FDCKDVQDMPKSILSKEEIDHII--MSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVL-RI 89
Query: 348 IYIW-------QLKDNDLTGIAFI--------DTEVYIASMVSVKNLILVGDYARSIALL 392
Y + + + + +I D +V+ VS L R ALL
Sbjct: 90 NYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLK---LRQ-ALL 145
Query: 393 RYQPE-YRTL---------SLVA---RDYKPTQPNSKGYYAGNPSRGIIDGSLVWKFLQL 439
+P + + YK + W L
Sbjct: 146 ELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIF--------------W----L 187
Query: 440 SLGER------LEI----CKKIGSKHNDILDEFSSMGFMISDKDKNVVLFMYQPEARESN 489
+L LE+ +I D S++ I + +
Sbjct: 188 NLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENC- 246
Query: 490 GGHRLIKKTDFHLGQHVNTFFKIRCK------PSSISDAPGARSRFLTWYASLDGALGFF 543
L+ + + N F + CK ++D A + + SLD
Sbjct: 247 ----LLVLLNVQNAKAWNA-FNLSCKILLTTRFKQVTDFLSAATTT---HISLDHHSM-- 296
Query: 544 LPLPEKNYRRLLMLQNVMVTHTSHTGGLNPRAFRTYKGKGYYAGNP------SRGIIDGS 597
L + LL+ L NP + I DG
Sbjct: 297 -TLTPDEVKSLLLK----YLDCR-PQDLPREVLT---------TNPRRLSIIAESIRDGL 341
Query: 598 LVWKFLQLSLGERLEICKKIGSKHNDILDELYDIE 632
W + ++L I S L+ L E
Sbjct: 342 ATWDNWKHVNCDKLT--TIIESS----LNVLEPAE 370
>3tee_A Flagella basal BODY P-ring formation protein FLGA; chaperone,
flagellar P-ring formation, flagellar FLGI protei
periplasmic protein; 1.95A {Salmonella typhimurium}
Length = 219
Score = 30.8 bits (69), Expect = 0.96
Identities = 15/52 (28%), Positives = 22/52 (42%), Gaps = 5/52 (9%)
Query: 295 GRILLFDIIEVVPEPGQPLTKNKIKMIYAKEQKGPVTAICHVAGFLVTAVGQ 346
+ L D+ PGQP+ I+ + + V I + GF V A GQ
Sbjct: 117 DAVSLRDL-----APGQPVQLTMIRQAWRVKAGQRVQVIANGEGFSVNAEGQ 163
>1rw7_A YDR533CP; alpha-beta sandwich, DJ-1/THIJ/PFPI superfamily, unknown
function; 1.80A {Saccharomyces cerevisiae} SCOP:
c.23.16.2 PDB: 1qvv_A* 1qvz_A 1qvw_A
Length = 243
Score = 29.6 bits (66), Expect = 3.0
Identities = 15/68 (22%), Positives = 24/68 (35%), Gaps = 4/68 (5%)
Query: 309 PGQPLTKNKIKMIYAKEQKGPVTAICHVAGFLVTAVGQKIYIWQLKDNDLTGIAFIDTEV 368
P ++ IY G V A+CH +K ++ +TG F D
Sbjct: 115 PKAKDLQDIASEIY--ANGGVVAAVCHGPAIFDGLTDKKTGRPLIEGKSITG--FTDVGE 170
Query: 369 YIASMVSV 376
I + S+
Sbjct: 171 TILGVDSI 178
>2fex_A Conserved hypothetical protein; structural genomics, protein
structure initiative, PSI, MIDW center for structural
genomics, MCSG; 1.70A {Agrobacterium tumefaciens} SCOP:
c.23.16.2
Length = 188
Score = 28.1 bits (63), Expect = 6.0
Identities = 11/93 (11%), Positives = 27/93 (29%), Gaps = 17/93 (18%)
Query: 300 FDIIEVVP---EPGQPLTKNKIKMI-YAKEQKGPVTAICH------VAGFL--VTAVGQK 347
D + V+P + + ++ +++ V IC G L V G
Sbjct: 64 IDAL-VIPGGLSWEKGTAADLGGLVKRFRDRDRLVAGICAAASALGGTGVLNDVAHTGNA 122
Query: 348 IYIWQLKDNDLTGIAFIDTEVYIASMVSVKNLI 380
+ + + D ++ ++
Sbjct: 123 LASHKAYPAYRGEAHYRDQPRAVSD----GGVV 151
>3ajv_A Putative uncharacterized protein; ENDA, archaea crenarch hydrolase;
1.70A {Aeropyrum pernix} PDB: 3p1z_A
Length = 190
Score = 28.1 bits (62), Expect = 7.0
Identities = 22/73 (30%), Positives = 30/73 (41%), Gaps = 8/73 (10%)
Query: 564 HTSHTGGLNPRAFRTYKGKGYYAGNPS--RGIIDGSLVWKFLQLSLGERLEICKKIGSKH 621
H H+ GL PR KG+G AG + R ++G V + S LE +IG
Sbjct: 7 HHHHSSGLVPRGSHMGKGEGEVAGCKAAARLGVEGVFVEECFDGSYCRNLE---RIGYLR 63
Query: 622 NDILDELYDIEAL 634
L +EA
Sbjct: 64 K---GRLEPLEAA 73
>2gys_A Cytokine receptor common beta chain; dimer of interlocking chains
of fibronectin-III domains, FOU fibronectin-III domains
PER chain; HET: NAG FUC BMA NDG; 2.70A {Homo sapiens}
SCOP: b.1.2.1 b.1.2.1 b.1.2.1 b.1.2.1 PDB: 1gh7_A*
3cxe_A* 1egj_A* 1c8p_A
Length = 419
Score = 28.4 bits (62), Expect = 8.5
Identities = 15/118 (12%), Positives = 25/118 (21%)
Query: 119 LRAHPMTIDGPVSTLAPFHNVNCPRGFLYFNAKSELRISVLPTHLSYDAPWPVRKVPLKC 178
+R + + C A+ + W VRK
Sbjct: 188 VRTRLAPGSRLSGRPSKWSPEVCWDSQPGDEAQPQNLECFFDGAAVLSCSWEVRKEVASS 247
Query: 179 TPHFLAYHLETKTYCIVTSTAEPSTDYYKFNGEDKELVTDPRDSRFIPPLVSQFHVSL 236
L Y V E + + + P Q+ VS+
Sbjct: 248 VSFGLFYKPSPDAGSAVLLREEECSPVLREGLGSLHTRHHCQIPVPDPATHGQYIVSV 305
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.139 0.428
Gapped
Lambda K H
0.267 0.0524 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 9,882,904
Number of extensions: 597463
Number of successful extensions: 1066
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1046
Number of HSP's successfully gapped: 17
Length of query: 638
Length of database: 6,701,793
Length adjustment: 100
Effective length of query: 538
Effective length of database: 3,909,693
Effective search space: 2103414834
Effective search space used: 2103414834
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (27.4 bits)