BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9200
(120 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2XQN|M Chain M, Complex Of The 2nd And 3rd Lim Domains Of Tes With The
Evh1 Domain Of Mena And The N-Terminal Domain Of
Actin-Like Protein Arp7a
Length = 119
Score = 93.6 bits (231), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 43/83 (51%), Positives = 56/83 (67%), Gaps = 6/83 (7%)
Query: 33 TEQSIASARASVMIYDDVNKKWIPSGSSSGLSKVHVFQHQVNNTFRVVGRKLQNQEYKAD 92
+EQSI ARA+VM+YDD NKKW+P+G S+G S+VH++ H NNTFRVVGRK+Q D
Sbjct: 5 SEQSICQARAAVMVYDDANKKWVPAGGSTGFSRVHIYHHTGNNTFRVVGRKIQ------D 58
Query: 93 YTVSINIPNKKGSNMNITITSYH 115
+ V IN KG N ++H
Sbjct: 59 HQVVINCAIPKGLKYNQATQTFH 81
>pdb|1EVH|A Chain A, Evh1 Domain From Murine Enabled In Complex With Acta
Peptide
Length = 112
Score = 93.2 bits (230), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 43/83 (51%), Positives = 56/83 (67%), Gaps = 6/83 (7%)
Query: 33 TEQSIASARASVMIYDDVNKKWIPSGSSSGLSKVHVFQHQVNNTFRVVGRKLQNQEYKAD 92
+EQSI ARA+VM+YDD NKKW+P+G S+G S+VH++ H NNTFRVVGRK+Q D
Sbjct: 2 SEQSICQARAAVMVYDDANKKWVPAGGSTGFSRVHIYHHTGNNTFRVVGRKIQ------D 55
Query: 93 YTVSINIPNKKGSNMNITITSYH 115
+ V IN KG N ++H
Sbjct: 56 HQVVINCAIPKGLKYNQATQTFH 78
>pdb|2IYB|A Chain A, Structure Of Complex Between The 3rd Lim Domain Of Tes And
The Evh1 Domain Of Mena
pdb|2IYB|B Chain B, Structure Of Complex Between The 3rd Lim Domain Of Tes And
The Evh1 Domain Of Mena
pdb|2IYB|C Chain C, Structure Of Complex Between The 3rd Lim Domain Of Tes And
The Evh1 Domain Of Mena
pdb|2IYB|D Chain D, Structure Of Complex Between The 3rd Lim Domain Of Tes And
The Evh1 Domain Of Mena
Length = 114
Score = 93.2 bits (230), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 43/83 (51%), Positives = 56/83 (67%), Gaps = 6/83 (7%)
Query: 33 TEQSIASARASVMIYDDVNKKWIPSGSSSGLSKVHVFQHQVNNTFRVVGRKLQNQEYKAD 92
+EQSI ARA+VM+YDD NKKW+P+G S+G S+VH++ H NNTFRVVGRK+Q D
Sbjct: 3 SEQSICQARAAVMVYDDANKKWVPAGGSTGFSRVHIYHHTGNNTFRVVGRKIQ------D 56
Query: 93 YTVSINIPNKKGSNMNITITSYH 115
+ V IN KG N ++H
Sbjct: 57 HQVVINCAIPKGLKYNQATQTFH 79
>pdb|1EGX|A Chain A, Solution Structure Of The Ena-Vasp Homology 1 (Evh1)
Domain Of Human Vasodilator-Stimulated Phosphoprotein
(Vasp)
Length = 115
Score = 65.5 bits (158), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 50/84 (59%), Gaps = 6/84 (7%)
Query: 33 TEQSIASARASVMIYDDVNKKWIPSGSS-SGLSKVHVFQHQVNNTFRVVGRKLQNQEYKA 91
+E I S+RA+VM+YDD NK+W+P+G+ S+V ++ + N+FRVVGRK+Q
Sbjct: 2 SETVICSSRATVMLYDDGNKRWLPAGTGPQAFSRVQIYHNPTANSFRVVGRKMQ-----P 56
Query: 92 DYTVSINIPNKKGSNMNITITSYH 115
D V IN +G N ++H
Sbjct: 57 DQQVVINCAIVRGVKYNQATPNFH 80
>pdb|1QC6|A Chain A, Evh1 Domain From EnaVASP-Like Protein In Complex With Acta
Peptide
pdb|1QC6|B Chain B, Evh1 Domain From EnaVASP-Like Protein In Complex With Acta
Peptide
Length = 130
Score = 65.5 bits (158), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 52/84 (61%), Gaps = 7/84 (8%)
Query: 33 TEQSIASARASVMIYDDVNKKWIP-SGSSSGLSKVHVFQHQVNNTFRVVGRKLQNQEYKA 91
+EQSI ARASV +YDD +KKW+P G S+++++ + ++TFRVVG KLQ+Q+
Sbjct: 2 SEQSICQARASVXVYDDTSKKWVPIKPGQQGFSRINIYHNTASSTFRVVGVKLQDQQVVI 61
Query: 92 DYTVSINIPNKKGSNMNITITSYH 115
+Y++ KG N ++H
Sbjct: 62 NYSIV------KGLKYNQATPTFH 79
>pdb|3SYX|A Chain A, Crystal Structure Of The Wh1 Domain From Human
Sprouty-Related, Evh1 Domain-Containing Protein.
Northeast Structural Genomics Consortium Target Hr5538b
Length = 130
Score = 37.7 bits (86), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 32/57 (56%), Gaps = 6/57 (10%)
Query: 36 SIASARASVMIYDDVNKKWIPSGSSSGLSKVHVFQ--HQVNN---TFRVVGRKLQNQ 87
S A RA VM DD + W+P G SGLS V VF+ HQ N F + G +L+++
Sbjct: 12 SYARVRAVVMTRDDSSGGWLPLG-GSGLSSVTVFKVPHQEENGCADFFIRGERLRDK 67
>pdb|2QPQ|A Chain A, Structure Of Bug27 From Bordetella Pertussis
pdb|2QPQ|B Chain B, Structure Of Bug27 From Bordetella Pertussis
pdb|2QPQ|C Chain C, Structure Of Bug27 From Bordetella Pertussis
Length = 301
Score = 26.2 bits (56), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 19/48 (39%)
Query: 27 NTSHYATEQSIASARASVMIYDDVNKKWIPSGSSSGLSKVHVFQHQVN 74
+ A Q + A VM DDV KK G S+ VFQ V
Sbjct: 236 GATPMAVRQKLYDGIAKVMQRDDVQKKLADLGYSTASDGPEVFQKMVE 283
>pdb|3SZE|A Chain A, Crystal Structure Of The Passenger Domain Of The E. Coli
Autotransporter Espp
Length = 968
Score = 25.4 bits (54), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 9/28 (32%), Positives = 18/28 (64%)
Query: 36 SIASARASVMIYDDVNKKWIPSGSSSGL 63
S A +++ +YD+ KKW+ +G+ G+
Sbjct: 204 SQGDAGSALFVYDNQKKKWVVAGTVWGI 231
>pdb|1WX9|A Chain A, Solution Structure Of The N-Terminal Ubiquitin-Like Domain
In The Human Bat3 Protein
Length = 86
Score = 25.4 bits (54), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
Query: 59 SSSGLSKVHVFQHQVNNTFR--VVGRKLQNQEYKADYTVSINIPNKK 103
SSG S + V +++ R +VG ++ +E+K S++IP++K
Sbjct: 1 GSSGSSGLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEK 47
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.313 0.124 0.351
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,341,444
Number of Sequences: 62578
Number of extensions: 114231
Number of successful extensions: 309
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 297
Number of HSP's gapped (non-prelim): 14
length of query: 120
length of database: 14,973,337
effective HSP length: 82
effective length of query: 38
effective length of database: 9,841,941
effective search space: 373993758
effective search space used: 373993758
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 45 (21.9 bits)