Query psy9200
Match_columns 120
No_of_seqs 105 out of 139
Neff 4.0
Searched_HMMs 29240
Date Fri Aug 16 21:29:07 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9200.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/9200hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3syx_A Sprouty-related, EVH1 d 100.0 5.1E-37 1.7E-41 227.5 10.2 80 34-120 10-94 (130)
2 1evh_A WH1 domain, protein (ME 100.0 1.1E-35 3.9E-40 213.0 9.9 83 32-120 1-83 (112)
3 1egx_A VAsp, vasodilator-stimu 100.0 9.7E-35 3.3E-39 209.2 9.1 83 32-120 1-85 (115)
4 2jp2_A Spred-2, sprouty-relate 100.0 6.7E-34 2.3E-38 208.4 11.3 85 29-120 7-96 (126)
5 1xod_A Spred1; sprouty, EVH1, 100.0 5.6E-34 1.9E-38 206.2 9.2 81 33-120 2-87 (118)
6 1ddw_A GLGF-domain protein hom 100.0 1.7E-33 5.9E-38 204.6 11.3 79 32-120 1-80 (120)
7 1i2h_A PSD-ZIP45(homer-1C/VESL 100.0 3.2E-32 1.1E-36 208.7 11.6 82 29-120 3-85 (168)
8 1qc6_A EVH1 domain from ENA/VA 100.0 2.7E-29 9.3E-34 182.9 11.1 83 32-120 1-84 (130)
9 2crf_A RAN binding protein 3; 99.2 8.3E-11 2.8E-15 87.5 9.1 77 32-118 24-104 (150)
10 1xke_A RAN-binding protein 2; 99.1 7.9E-10 2.7E-14 80.1 9.8 76 32-117 5-80 (130)
11 2y8g_A Ranbp3-B, RAN-binding p 99.0 9.9E-10 3.4E-14 80.6 8.9 77 32-118 12-92 (138)
12 1rrp_B Nuclear pore complex pr 99.0 9.6E-10 3.3E-14 79.8 7.9 76 32-117 19-94 (134)
13 3n7c_A ABR034WP; nuclear pore 99.0 1.6E-09 5.6E-14 78.9 8.2 76 33-118 9-88 (130)
14 2ifs_A N-WAsp, wiskott-aldrich 98.8 8.2E-09 2.8E-13 78.8 7.7 105 2-119 7-131 (169)
15 1mke_A WIP - N-WAsp, fusion pr 98.8 3.8E-08 1.3E-12 74.1 8.9 104 3-119 9-114 (152)
16 1k5d_B RAN-specific GTPase-act 98.4 1.5E-06 5.2E-11 67.6 9.2 75 33-117 44-122 (201)
17 4hat_B RAN-specific GTPase-act 98.2 7.4E-06 2.5E-10 60.3 8.2 69 32-110 20-88 (140)
18 3m1i_B RAN-specific GTPase-act 98.0 2.6E-05 8.9E-10 60.5 9.1 68 33-110 72-139 (191)
19 2ec1_A Nucleoporin 50 kDa; ran 97.0 0.0021 7.1E-08 46.1 6.6 65 33-110 11-76 (125)
20 2lyd_A Decapping protein 1; DC 41.9 31 0.0011 24.6 4.1 60 38-109 34-95 (134)
21 2oqb_A Histone-arginine methyl 26.1 1.8E+02 0.0062 20.7 6.6 70 32-112 4-73 (117)
22 1dyo_A Endo-1,4-beta-xylanase 20.3 52 0.0018 23.1 2.1 13 47-59 15-27 (160)
No 1
>3syx_A Sprouty-related, EVH1 domain-containing protein 1; WH1 domain, human sprouty-related, EVH1 domain-containing PR Q7Z699; 2.45A {Homo sapiens}
Probab=100.00 E-value=5.1e-37 Score=227.54 Aligned_cols=80 Identities=34% Similarity=0.451 Sum_probs=74.9
Q ss_pred ccceEEEEEEEEEEeCCCCCeEECCCCCCeEEEEEEEeC-----CCCceEEEEeeeccccccccceEEEeeecCCCCeee
Q psy9200 34 EQSIASARASVMIYDDVNKKWIPSGSSSGLSKVHVFQHQ-----VNNTFRVVGRKLQNQEYKADYTVSINIPNKKGSNMN 108 (120)
Q Consensus 34 E~~I~~vrA~VM~yDd~tk~WvP~gg~~glS~V~i~~~~-----~~n~fRIvG~rlqD~~~~~~~~VvINc~I~~~l~Yn 108 (120)
.-+.|++||+||+|||+||+|||+|| +|+|.|+||+++ ++|+|||||+|++|+ +|+|||+|.++|+||
T Consensus 10 ~~~~~~~rA~Vm~~Dd~tk~WlP~gg-~glS~v~iy~~~~~~~~~~~~yRIvg~r~~d~------~vvinc~I~~~l~Yn 82 (130)
T 3syx_A 10 HMSYARVRAVVMTRDDSSGGWLPLGG-SGLSSVTVFKVPHQEENGCADFFIRGERLRDK------MVVLECMLKKDLIYN 82 (130)
T ss_dssp TTEEEEEEEEEEEECSSSSCEEESSS-SCCEEEEEEEEESSSTTSSEEEEEEEEETTTC------CEEEEEECCTTCEEE
T ss_pred cceeeEEEEEeeeEcCCCCceEeCCC-CCCceEEEEeccCCCCCCCcEEEEEEEecCCC------eEEEeeeecCCceEE
Confidence 44689999999999999999999998 899999999974 468999999999999 999999999999999
Q ss_pred eecCcceeeccC
Q psy9200 109 ITITSYHYSKSK 120 (120)
Q Consensus 109 katptFHqWrD~ 120 (120)
||+|+||||||.
T Consensus 83 katp~FHqWrd~ 94 (130)
T 3syx_A 83 KVTPTFHHWKID 94 (130)
T ss_dssp EEETTEEEEEET
T ss_pred eccccccccccc
Confidence 999999999985
No 2
>1evh_A WH1 domain, protein (MENA EVH1 domain); molecular recognition, actin dynamics, contractIle protein; 1.80A {Mus musculus} SCOP: b.55.1.4 PDB: 2xqn_M 2iyb_A
Probab=100.00 E-value=1.1e-35 Score=212.97 Aligned_cols=83 Identities=51% Similarity=0.856 Sum_probs=79.5
Q ss_pred ccccceEEEEEEEEEEeCCCCCeEECCCCCCeEEEEEEEeCCCCceEEEEeeeccccccccceEEEeeecCCCCeeeeec
Q psy9200 32 ATEQSIASARASVMIYDDVNKKWIPSGSSSGLSKVHVFQHQVNNTFRVVGRKLQNQEYKADYTVSINIPNKKGSNMNITI 111 (120)
Q Consensus 32 ~~E~~I~~vrA~VM~yDd~tk~WvP~gg~~glS~V~i~~~~~~n~fRIvG~rlqD~~~~~~~~VvINc~I~~~l~Ynkat 111 (120)
|+|++|+++||+||+|||++|+|+|++|.+|+|+|++|+|..+|+|||+|++++|+ +|+|||.|.++|+||+++
T Consensus 1 ~~e~~i~~~~A~V~~~d~~~~~W~p~~~~~g~s~V~~~~d~~~~~yrIv~~~l~~~------~vv~~~~l~~~~~y~~~~ 74 (112)
T 1evh_A 1 MSEQSICQARAAVMVYDDANKKWVPAGGSTGFSRVHIYHHTGNNTFRVVGRKIQDH------QVVINCAIPKGLKYNQAT 74 (112)
T ss_dssp -CEEEEEEEEEEEEEEETTTTEEEEGGGCCSCEEEEEEEETTTTEEEEEEEETTTC------CEEEEEEECTTCCCBCCS
T ss_pred CCceeEEEEEEEEEEEcCCCCceEECCCCCCceEEEEEEECCCCEEEEEEEECCCC------cEEEeeEecCCceEEecC
Confidence 79999999999999999999999999975689999999999999999999999999 999999999999999999
Q ss_pred CcceeeccC
Q psy9200 112 TSYHYSKSK 120 (120)
Q Consensus 112 ptFHqWrD~ 120 (120)
|+||||+|.
T Consensus 75 p~Fh~w~~~ 83 (112)
T 1evh_A 75 QTFHQWRDA 83 (112)
T ss_dssp SSEEEEECS
T ss_pred ccceeEecC
Confidence 999999984
No 3
>1egx_A VAsp, vasodilator-stimulated phosphoprotein; EVH1, VAsp-ENA, poly-proline-binding domain, signaling protein; NMR {Homo sapiens} SCOP: b.55.1.4
Probab=100.00 E-value=9.7e-35 Score=209.21 Aligned_cols=83 Identities=40% Similarity=0.742 Sum_probs=79.8
Q ss_pred ccccceEEEEEEEEEEeCCCCCeEECCC-CCCeEEEEEEEeCCCCceEEEEeeec-cccccccceEEEeeecCCCCeeee
Q psy9200 32 ATEQSIASARASVMIYDDVNKKWIPSGS-SSGLSKVHVFQHQVNNTFRVVGRKLQ-NQEYKADYTVSINIPNKKGSNMNI 109 (120)
Q Consensus 32 ~~E~~I~~vrA~VM~yDd~tk~WvP~gg-~~glS~V~i~~~~~~n~fRIvG~rlq-D~~~~~~~~VvINc~I~~~l~Ynk 109 (120)
|+|++|+++||+||+|||++|+|+|+++ ++|+|+|++|+|..+|+|||+|++++ |+ +|+|||.|.++|+||+
T Consensus 1 ~~e~~i~~~~A~V~~~d~~~~~W~p~~~g~~gvs~V~~~~d~~~~~yrI~~~~l~~~~------~vv~~~~l~~~l~y~~ 74 (115)
T 1egx_A 1 MSETVICSSRATVMLYDDGNKRWLPAGTGPQAFSRVQIYHNPTANSFRVVGRKMQPDQ------QVVINCAIVRGVKYNQ 74 (115)
T ss_dssp CCSCEEEEEEEECBEECTTTSSCCBSSCSCCCCEEEEEEEETTTTEEEEEEEESSTTC------CEEEEEEECSSCCCCC
T ss_pred CCceeEEEEEEEEEEEcCCCCceeECCCCCCCccEEEEEEeCCCCEEEEEEEEcCCCC------EEEEeeEEcCCceEEe
Confidence 8999999999999999999999999995 46899999999999999999999999 88 9999999999999999
Q ss_pred ecCcceeeccC
Q psy9200 110 TITSYHYSKSK 120 (120)
Q Consensus 110 atptFHqWrD~ 120 (120)
++|+||||+|.
T Consensus 75 ~~p~FH~w~~~ 85 (115)
T 1egx_A 75 ATPNFHQWRDA 85 (115)
T ss_dssp SSTTEEEEESS
T ss_pred cCccceEEecC
Confidence 99999999984
No 4
>2jp2_A Spred-2, sprouty-related, EVH1 domain-containing protein 2; solution structure, structural genomics, structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=100.00 E-value=6.7e-34 Score=208.38 Aligned_cols=85 Identities=22% Similarity=0.353 Sum_probs=80.1
Q ss_pred CCCccccceEEEEEEEEEEeCCCCCeEECCCCCCeEEEEEEEe-----CCCCceEEEEeeeccccccccceEEEeeecCC
Q psy9200 29 SHYATEQSIASARASVMIYDDVNKKWIPSGSSSGLSKVHVFQH-----QVNNTFRVVGRKLQNQEYKADYTVSINIPNKK 103 (120)
Q Consensus 29 ~~~~~E~~I~~vrA~VM~yDd~tk~WvP~gg~~glS~V~i~~~-----~~~n~fRIvG~rlqD~~~~~~~~VvINc~I~~ 103 (120)
.+.++|++|+++||+||+|||++|+|+|+++ +++|+|+||++ ..+++|||+|++++|+ +|+|||.|++
T Consensus 7 ~~~~~~~~i~~~~A~Vm~~D~~~~~W~p~~~-g~ls~v~v~~~~~~~d~~~~~yrI~~~~l~d~------~vv~~~~l~~ 79 (126)
T 2jp2_A 7 THPDDDSYIVRVKAVVMTRDDSSGGWFPQEG-GGISRVGVCKVMHPEGNGRSGFLIHGERQKDK------LVVLECYVRK 79 (126)
T ss_dssp SSSSCCSEEEEEEEEEEEECTTSSSSEECSC-CSCEEEEEECCBCTTCSSCBCEEEEEEESSSS------CEEEEEEESS
T ss_pred cCCCCcceEEEEEEEEeeEcCCCCCEeeCCC-CCcccEEEEEecCCCCCCCCEEEEEEEEcCCC------eEEEEEEEeC
Confidence 3557899999999999999999999999998 79999999986 4889999999999999 9999999999
Q ss_pred CCeeeeecCcceeeccC
Q psy9200 104 GSNMNITITSYHYSKSK 120 (120)
Q Consensus 104 ~l~YnkatptFHqWrD~ 120 (120)
+|+||+++|+||||+|.
T Consensus 80 ~l~Y~~~~p~FH~w~~~ 96 (126)
T 2jp2_A 80 DLVYTKANPTFHHWKVD 96 (126)
T ss_dssp CCCEEEEETTEEEEECS
T ss_pred CceEEecCCcceEEEcC
Confidence 99999999999999984
No 5
>1xod_A Spred1; sprouty, EVH1, peptide-binding, signaling protein; 1.15A {Xenopus tropicalis} SCOP: b.55.1.4 PDB: 1tj6_A
Probab=100.00 E-value=5.6e-34 Score=206.22 Aligned_cols=81 Identities=28% Similarity=0.420 Sum_probs=71.8
Q ss_pred cccceEEEEEEEEEEeCCCCCeEECCCCCCeEEEEEEEe-----CCCCceEEEEeeeccccccccceEEEeeecCCCCee
Q psy9200 33 TEQSIASARASVMIYDDVNKKWIPSGSSSGLSKVHVFQH-----QVNNTFRVVGRKLQNQEYKADYTVSINIPNKKGSNM 107 (120)
Q Consensus 33 ~E~~I~~vrA~VM~yDd~tk~WvP~gg~~glS~V~i~~~-----~~~n~fRIvG~rlqD~~~~~~~~VvINc~I~~~l~Y 107 (120)
+|++|+++||+||+|||++|+|+|+++ +++|+|+||++ ..+|+|||+|++++|+ +|+|||.|.++|+|
T Consensus 2 ~~~~i~~~~A~V~~~d~~~~~W~p~~~-g~ls~v~i~~~~~~~d~~~~~yrIv~~~l~~~------~vv~~~~l~~~~~y 74 (118)
T 1xod_A 2 SDDSYARVRAVVMTRDDSSGGWLQLGG-GGLSSVTVSKTLQPGDSGGTEFLVHGERLRDK------TVVLECVLRRDLVY 74 (118)
T ss_dssp ---CCEEEEEEEEEECSSSSCEEEGGG-CCCEEEEEECC---------CCEEEEEETTTC------CEEEEEECCTTCEE
T ss_pred CCccEEEEEEEEeeEcCCCCCEeeCCC-CCcccEEEEEecCcCCCCCCEEEEEEEECCCC------eEEEEEEEeCCcEE
Confidence 699999999999999999999999998 79999999996 4889999999999999 99999999999999
Q ss_pred eeecCcceeeccC
Q psy9200 108 NITITSYHYSKSK 120 (120)
Q Consensus 108 nkatptFHqWrD~ 120 (120)
|+++|+||||+|.
T Consensus 75 ~~~~p~Fh~w~~~ 87 (118)
T 1xod_A 75 NKVTPTFHHWRIG 87 (118)
T ss_dssp EEEETTEEEEEET
T ss_pred EecCCcceEEEeC
Confidence 9999999999984
No 6
>1ddw_A GLGF-domain protein homer; pleckstrin homology domain fold, signaling protein; 1.70A {Rattus norvegicus} SCOP: b.55.1.4 PDB: 1ddv_A 2p8v_A 1i7a_A*
Probab=100.00 E-value=1.7e-33 Score=204.57 Aligned_cols=79 Identities=23% Similarity=0.328 Sum_probs=74.4
Q ss_pred ccccceEEEEEEEEEEeCCCC-CeEECCCCCCeEEEEEEEeCCCCceEEEEeeeccccccccceEEEeeecCCCCeeeee
Q psy9200 32 ATEQSIASARASVMIYDDVNK-KWIPSGSSSGLSKVHVFQHQVNNTFRVVGRKLQNQEYKADYTVSINIPNKKGSNMNIT 110 (120)
Q Consensus 32 ~~E~~I~~vrA~VM~yDd~tk-~WvP~gg~~glS~V~i~~~~~~n~fRIvG~rlqD~~~~~~~~VvINc~I~~~l~Ynka 110 (120)
|+|++||++||+||+|||++| +|+|+|+ + .+.|++|+|.++|+|||+|++ |+ +|+|||.|+++|+||++
T Consensus 1 ~~E~~i~~~rA~V~~~D~~tk~~W~p~g~-~-~~~V~~~~d~~~~~yRIv~~~--~~------~vv~n~~i~~~l~y~~a 70 (120)
T 1ddw_A 1 MGEQPIFSTRAHVFQIDPNTKKNWVPTSK-H-AVTVSYFYDSTRNVYRIISLD--GS------KAIINSTITPNMTFTKT 70 (120)
T ss_dssp CCEEEEEEEEEEEEEECTTTSCSEEESCS-S-CEEEEEEEETTTTEEEEEEEE--TT------EEEEEEECCTTCCCEEC
T ss_pred CCceEEEEEEEEEEEEcCCCCCceEeCCC-C-ceEEEEEEcCCCCEEEEEEcc--CC------EEEEeCEecCCcEEeeC
Confidence 899999999999999999997 7999997 3 479999999999999999965 87 99999999999999999
Q ss_pred cCcceeeccC
Q psy9200 111 ITSYHYSKSK 120 (120)
Q Consensus 111 tptFHqWrD~ 120 (120)
+|+||||+|.
T Consensus 71 ~p~FhqW~d~ 80 (120)
T 1ddw_A 71 SQKFGQWADS 80 (120)
T ss_dssp SSSEEEEEET
T ss_pred CccccEEEcC
Confidence 9999999984
No 7
>1i2h_A PSD-ZIP45(homer-1C/VESL-1L); enabled VAsp homology 1 domain, signaling protein; 1.80A {Rattus norvegicus} SCOP: b.55.1.4
Probab=99.98 E-value=3.2e-32 Score=208.68 Aligned_cols=82 Identities=22% Similarity=0.347 Sum_probs=75.9
Q ss_pred CCCccccceEEEEEEEEEEeCCCC-CeEECCCCCCeEEEEEEEeCCCCceEEEEeeeccccccccceEEEeeecCCCCee
Q psy9200 29 SHYATEQSIASARASVMIYDDVNK-KWIPSGSSSGLSKVHVFQHQVNNTFRVVGRKLQNQEYKADYTVSINIPNKKGSNM 107 (120)
Q Consensus 29 ~~~~~E~~I~~vrA~VM~yDd~tk-~WvP~gg~~glS~V~i~~~~~~n~fRIvG~rlqD~~~~~~~~VvINc~I~~~l~Y 107 (120)
+.+|+|++||++||+||+|||++| +|+|+|+ ++ .+|+||+|.++|+|||+|++ |+ +|+|||.|+++|+|
T Consensus 3 ~~~~~E~~I~s~rA~Vm~~D~~tk~~WvP~g~-~~-~~V~i~~d~~rnsyRIvg~~--d~------kvvinc~I~~~l~Y 72 (168)
T 1i2h_A 3 PEFMGEQPIFSTRAHVFQIDPNTKKNWVPTSK-HA-VTVSYFYDSTRNVYRIISLD--GS------KAIINSTITPNMTF 72 (168)
T ss_dssp -CCSSSCCSEEEEEEEEEECTTSSCCSEESCS-SC-EEEEEEEETTTTEEEEEEEE--TT------EEEEEEECCTTCCE
T ss_pred cccccceeEEEEEEEEEEECCCCCCceeecCC-CC-eEEEEEEcCCCCEEEEEEcc--CC------EEEEecEecCCcEE
Confidence 467999999999999999999998 7999998 55 49999999999999999975 77 99999999999999
Q ss_pred eeecCcceeeccC
Q psy9200 108 NITITSYHYSKSK 120 (120)
Q Consensus 108 nkatptFHqWrD~ 120 (120)
|+++|+||||+|.
T Consensus 73 ~kasp~FHqW~d~ 85 (168)
T 1i2h_A 73 TKTSQKFGQWADS 85 (168)
T ss_dssp EEEETTEEEEEET
T ss_pred eeCCcccceeecC
Confidence 9999999999984
No 8
>1qc6_A EVH1 domain from ENA/VAsp-like protein; AN incomplete seven stranded anti-parallel beta barrel closed by AN alpha helix, EVH1 domain; 2.60A {Mus musculus} SCOP: b.55.1.4
Probab=99.96 E-value=2.7e-29 Score=182.89 Aligned_cols=83 Identities=43% Similarity=0.725 Sum_probs=76.8
Q ss_pred ccccceEEEEEEEEEEeCCCCCeEECCC-CCCeEEEEEEEeCCCCceEEEEeeeccccccccceEEEeeecCCCCeeeee
Q psy9200 32 ATEQSIASARASVMIYDDVNKKWIPSGS-SSGLSKVHVFQHQVNNTFRVVGRKLQNQEYKADYTVSINIPNKKGSNMNIT 110 (120)
Q Consensus 32 ~~E~~I~~vrA~VM~yDd~tk~WvP~gg-~~glS~V~i~~~~~~n~fRIvG~rlqD~~~~~~~~VvINc~I~~~l~Ynka 110 (120)
|+|++|+++||+||+|||++++|+|.|. ..+|++|+|++|+.++.|||+|++++|+ +|++||.|.++|+||++
T Consensus 1 ~~E~~i~~~~A~V~~~d~~~~~W~~~g~G~~~l~~V~i~~~~~~~~~Riv~~~~~~~------~vi~n~~i~~~~~y~~~ 74 (130)
T 1qc6_A 1 MSEQSICQARASVMVYDDTSKKWVPIKPGQQGFSRINIYHNTASSTFRVVGVKLQDQ------QVVINYSIVKGLKYNQA 74 (130)
T ss_dssp CCCEEEEEEEEEEEEEETTTTEEEECC-----CEEEEEEEETTTTEEEEEEECTTTC------CEEEEEECCTTCEEEEE
T ss_pred CCceeEEEEEEEEEEECCCCCceeECCCCceeeeEEEEEecCCCcEEEEEEEeCCCC------eEEEeeEEeCCcEEecc
Confidence 8999999999999999999999999994 3478999999999999999999999999 99999999999999999
Q ss_pred cCcceeeccC
Q psy9200 111 ITSYHYSKSK 120 (120)
Q Consensus 111 tptFHqWrD~ 120 (120)
+++||||+|.
T Consensus 75 ~~~Fh~w~~~ 84 (130)
T 1qc6_A 75 TPTFHQWRDA 84 (130)
T ss_dssp ETTEEEEECS
T ss_pred CCeeEEEEcC
Confidence 9999999984
No 9
>2crf_A RAN binding protein 3; RAN_BP1 domain, ranbp3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.55.1.3
Probab=99.19 E-value=8.3e-11 Score=87.48 Aligned_cols=77 Identities=10% Similarity=0.163 Sum_probs=68.5
Q ss_pred ccccceEEEEEEEEEEeCCCCCeEECCCCCCeEEEEEEEeC----CCCceEEEEeeeccccccccceEEEeeecCCCCee
Q psy9200 32 ATEQSIASARASVMIYDDVNKKWIPSGSSSGLSKVHVFQHQ----VNNTFRVVGRKLQNQEYKADYTVSINIPNKKGSNM 107 (120)
Q Consensus 32 ~~E~~I~~vrA~VM~yDd~tk~WvP~gg~~glS~V~i~~~~----~~n~fRIvG~rlqD~~~~~~~~VvINc~I~~~l~Y 107 (120)
..|..|+++||-+|.||+.++.|..-| .-.+.|.++. +.+.+||+.|+.+.+ +|+||+.|.++|+|
T Consensus 24 E~E~~l~~~raKL~~fd~~~~~WkERG----~G~lkil~~k~~~~~t~k~RlvmR~d~~~------kv~lN~~i~~~m~~ 93 (150)
T 2crf_A 24 EAESNVLQMQCKLFVFDKTSQSWVERG----RGLLRLNDMASTDDGTLQSRLVMRTQGSL------RLILNTKLWAQMQI 93 (150)
T ss_dssp CCCEEEEEEEEEEEEEETTTTEEEEEE----EEEEEEEEEECSSSCSEEEEEEEEESSSC------CEEEEEECCTTCCE
T ss_pred cCeEEEEEEEeEEEEEcCCCCCcccce----eEEEEEEeccccCCCCccEEEEEEEcCcc------eEEeeeeccCCcee
Confidence 468999999999999999999999855 5578888875 356899999988777 99999999999999
Q ss_pred eeecCcceeec
Q psy9200 108 NITITSYHYSK 118 (120)
Q Consensus 108 nkatptFHqWr 118 (120)
+++++++.+|.
T Consensus 94 ~~~~~k~~~~~ 104 (150)
T 2crf_A 94 DKASEKSIHIT 104 (150)
T ss_dssp ECCSSSEEEEE
T ss_pred ecCCCCEEEEE
Confidence 99999999997
No 10
>1xke_A RAN-binding protein 2; beta barrel, pleckstrin-homology (PH) domain, phosphotyrosine-binding (PTB) domain, protein transport; NMR {Homo sapiens} SCOP: b.55.1.3
Probab=99.08 E-value=7.9e-10 Score=80.05 Aligned_cols=76 Identities=21% Similarity=0.273 Sum_probs=66.1
Q ss_pred ccccceEEEEEEEEEEeCCCCCeEECCCCCCeEEEEEEEeCCCCceEEEEeeeccccccccceEEEeeecCCCCeeeeec
Q psy9200 32 ATEQSIASARASVMIYDDVNKKWIPSGSSSGLSKVHVFQHQVNNTFRVVGRKLQNQEYKADYTVSINIPNKKGSNMNITI 111 (120)
Q Consensus 32 ~~E~~I~~vrA~VM~yDd~tk~WvP~gg~~glS~V~i~~~~~~n~fRIvG~rlqD~~~~~~~~VvINc~I~~~l~Ynkat 111 (120)
-.|..|+++||-+|.||+.++.|-.-| .-.+.|+++...+.+||+-|+-+.+ +|+||+.|.++|+|+...
T Consensus 5 E~E~~l~~~raKL~~~~~~~~~WkERG----~G~lkil~~k~~~k~RlvmR~d~~~------kv~lN~~i~~~m~~~~~~ 74 (130)
T 1xke_A 5 EDEKVLYSQRVKLFRFDAEVSQWKERG----LGNLKILKNEVNGKLRMLMRREQVL------KVCANHWITTTMNLKPLS 74 (130)
T ss_dssp SCEEEEEEEEEEEEEEETTTTEEEEEE----EEEEEEEEETTSSCEEEEEEETTTT------EEEEEEECCTTSCEEECT
T ss_pred cceEEEEEEEEEEEEEcCCCCCcccCc----EEEEEEEEcCCCCeEEEEEEEcCCC------eEEEecEeCCCcEEeecC
Confidence 358899999999999999999999855 5579999999999999999988777 999999999999999865
Q ss_pred Ccceee
Q psy9200 112 TSYHYS 117 (120)
Q Consensus 112 ptFHqW 117 (120)
.....|
T Consensus 75 ~s~~~~ 80 (130)
T 1xke_A 75 GSDRAW 80 (130)
T ss_dssp TCSSCE
T ss_pred CCCeEE
Confidence 544433
No 11
>2y8g_A Ranbp3-B, RAN-binding protein 3; protein transport, CRM1-mediated nuclear export; 1.61A {Homo sapiens} PDB: 2y8f_A
Probab=99.04 E-value=9.9e-10 Score=80.57 Aligned_cols=77 Identities=10% Similarity=0.175 Sum_probs=66.4
Q ss_pred ccccceEEEEEEEEEEeCCCCCeEECCCCCCeEEEEEEEeCC----CCceEEEEeeeccccccccceEEEeeecCCCCee
Q psy9200 32 ATEQSIASARASVMIYDDVNKKWIPSGSSSGLSKVHVFQHQV----NNTFRVVGRKLQNQEYKADYTVSINIPNKKGSNM 107 (120)
Q Consensus 32 ~~E~~I~~vrA~VM~yDd~tk~WvP~gg~~glS~V~i~~~~~----~n~fRIvG~rlqD~~~~~~~~VvINc~I~~~l~Y 107 (120)
-.|..|+++||-+|.||+.++.|..-| ...+.|.++.. .+.+||+-|+-+.+ +|+||+.|.++|+|
T Consensus 12 E~E~~~~~~raKL~~f~~~~~~WkERG----~G~lkil~~k~~~~~t~k~RlvmR~d~~~------kv~lN~~i~~~m~~ 81 (138)
T 2y8g_A 12 EAESNVLQMQCKLFVFDKTSQSWVAVG----RGLLRLNDMASTDDGTLQSRLVMRTQGSL------RLILNTKLWAQMQI 81 (138)
T ss_dssp --CEEEEEEEEEEEEEETTTTEEEEEE----EEEEEEEEEECTTTCCEEEEEEEEETTTC------CEEEEEECCTTCCE
T ss_pred cCcEEEEEEEeEEEEEecCCCCchhce----EEEEEEEEeccCCCCCccEEEEEEEcCcc------eEEEeeEecCCcee
Confidence 368899999999999999999999865 45688888753 36799999987777 89999999999999
Q ss_pred eeecCcceeec
Q psy9200 108 NITITSYHYSK 118 (120)
Q Consensus 108 nkatptFHqWr 118 (120)
++++.++.+|.
T Consensus 82 ~~~~~k~~~~~ 92 (138)
T 2y8g_A 82 DKASEKSIRIT 92 (138)
T ss_dssp EEEETTEEEEE
T ss_pred ecCCCCEEEEE
Confidence 99999999996
No 12
>1rrp_B Nuclear pore complex protein NUP358; complex (small GTPase/nuclear protein), small GTPase, nuclear transport; HET: GNP; 2.96A {Homo sapiens} SCOP: b.55.1.3
Probab=99.01 E-value=9.6e-10 Score=79.84 Aligned_cols=76 Identities=18% Similarity=0.287 Sum_probs=66.1
Q ss_pred ccccceEEEEEEEEEEeCCCCCeEECCCCCCeEEEEEEEeCCCCceEEEEeeeccccccccceEEEeeecCCCCeeeeec
Q psy9200 32 ATEQSIASARASVMIYDDVNKKWIPSGSSSGLSKVHVFQHQVNNTFRVVGRKLQNQEYKADYTVSINIPNKKGSNMNITI 111 (120)
Q Consensus 32 ~~E~~I~~vrA~VM~yDd~tk~WvP~gg~~glS~V~i~~~~~~n~fRIvG~rlqD~~~~~~~~VvINc~I~~~l~Ynkat 111 (120)
..|..|+++||-+|.||+.++.|-.-| .-.+.|+++...+.+||+-|+-+.+ +|+||+.|.++|+|++..
T Consensus 19 E~E~~lf~~raKL~~~~~~~~~WkerG----~G~lkil~~k~~~k~RlvmR~d~~~------kv~lN~~i~~~m~~~~~~ 88 (134)
T 1rrp_B 19 EDEEEFFCNRAKLFRFDVESKEWKERG----IGNVKILRHKTSGKIRLLMRREQVL------KICANHYISPDMKLTPNA 88 (134)
T ss_dssp CSEEEEEEEEEEEEEECSSSSCEEEEE----EEEEEEEEESSSCCCEEEEECTTTC------CEEECCBCCSSCCCBCST
T ss_pred cCeEEEEEEEEEEEEEcccCCCcccCc----EEEEEEEEECCCCeEEEEEEEcCCC------cEEEEeEecCCceEeecC
Confidence 568999999999999999999998855 5579999999999999999988888 999999999999999865
Q ss_pred Ccceee
Q psy9200 112 TSYHYS 117 (120)
Q Consensus 112 ptFHqW 117 (120)
.....|
T Consensus 89 ~s~~~~ 94 (134)
T 1rrp_B 89 GSDRSF 94 (134)
T ss_dssp TCTTEE
T ss_pred CCCeEE
Confidence 443444
No 13
>3n7c_A ABR034WP; nuclear pore complex, NUP2, RAN-binding domain, nucleoporin, structural genomics, PSI-2, protein structure initiative; 2.26A {Ashbya gossypii} PDB: 3oan_A
Probab=98.99 E-value=1.6e-09 Score=78.94 Aligned_cols=76 Identities=16% Similarity=0.213 Sum_probs=62.8
Q ss_pred cccceEEEEEEEEEEeCCCCCeEECCCCCCeEEEEEEEeCC-CCceEEEEeeeccccccccceEEEeeecCCCCeeeeec
Q psy9200 33 TEQSIASARASVMIYDDVNKKWIPSGSSSGLSKVHVFQHQV-NNTFRVVGRKLQNQEYKADYTVSINIPNKKGSNMNITI 111 (120)
Q Consensus 33 ~E~~I~~vrA~VM~yDd~tk~WvP~gg~~glS~V~i~~~~~-~n~fRIvG~rlqD~~~~~~~~VvINc~I~~~l~Ynkat 111 (120)
.|..|+++||-+|.||+.++.|-.-| .-.+.|+++.. .+.+||+-|+-+.+ +|+||+.|.++|+|++..
T Consensus 9 ~E~~lf~~raKL~~f~~~~~~WkerG----~G~lkil~~k~~~~k~RllmR~d~~~------kv~lN~~i~~~m~~~~~~ 78 (130)
T 3n7c_A 9 NEEVLFCEKAKLLIFDSDTKGYTSRG----VGELKLLRKKDDKGKVRVLCRSEGMG------HVLLNTSVVKSFKYQPID 78 (130)
T ss_dssp -CEEEEEEEEEEEEECC---CEEEEE----EEEEEEEEETTEEEEEEEEEEC-CCC------CEEEEEECCTTBCCEESC
T ss_pred CeeEEEEEEEEEEEEeCCCCCchhcc----eEEEEEEEecCCCCEEEEEEEecCCc------eEEeeccccCCcEEeEcC
Confidence 58899999999999999999998744 55799999984 78999999987777 899999999999999986
Q ss_pred ---Ccceeec
Q psy9200 112 ---TSYHYSK 118 (120)
Q Consensus 112 ---ptFHqWr 118 (120)
.+|..|.
T Consensus 79 ~~~~~~v~~~ 88 (130)
T 3n7c_A 79 ADNENLIKWP 88 (130)
T ss_dssp TTCTTEEEEE
T ss_pred CCCccEEEEE
Confidence 6888875
No 14
>2ifs_A N-WAsp, wiskott-aldrich syndrome protien ineracting protein and neural wiskott-aldrich syndrome...; verprolin, polyproline, protein- protein complex; NMR {Homo sapiens}
Probab=98.84 E-value=8.2e-09 Score=78.81 Aligned_cols=105 Identities=13% Similarity=0.151 Sum_probs=82.1
Q ss_pred cccccccCCCcceeecCCCcceeeecCCCCcc------------------ccceEEEEEEEEEEeCCCCCeEECCCCCCe
Q psy9200 2 SIPILSSIPHTKRIHNCDSSYVATVNTSHYAT------------------EQSIASARASVMIYDDVNKKWIPSGSSSGL 63 (120)
Q Consensus 2 ~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~------------------E~~I~~vrA~VM~yDd~tk~WvP~gg~~gl 63 (120)
+.+-++.+|-.+--..|--+|-++.+.....+ =+.++++-|++++.|+. ++|.+.. .|+
T Consensus 7 ~~~~~~~~p~~~~~~~~~~~ypsK~~R~~~~~gl~~~~en~~lf~llG~~c~~lataVaqLy~a~~~-~~W~~~~--~Ga 83 (169)
T 2ifs_A 7 YFHPISDLPPPEPYVQTTKSYPSKLARNESRGGLVPRGSGGSLFSFLGKKCVTMSSAVVQLYAADRN-CMWSKKC--SGV 83 (169)
T ss_dssp CCCCGGGSCCCCCCCSCCCCCGGGTSSCCCCCCSSSCCCCCCCCSSCCCCEEEEEEEEEEEEEEETT-TEEEEEE--EEE
T ss_pred ccCChhhCCCccccccccccCCccccccccccccCChhhHHHHHHHhCCCceEEEEEEEEEEEECCC-CeeEecC--ceE
Confidence 34556778877777777778877765555431 13788999999999876 7899864 354
Q ss_pred EEEEEEEeCCCCce--EEEEeeeccccccccceEEEeeecCCCCeeeeecCcceeecc
Q psy9200 64 SKVHVFQHQVNNTF--RVVGRKLQNQEYKADYTVSINIPNKKGSNMNITITSYHYSKS 119 (120)
Q Consensus 64 S~V~i~~~~~~n~f--RIvG~rlqD~~~~~~~~VvINc~I~~~l~YnkatptFHqWrD 119 (120)
+.+-+|..+++| ||++.+ ++ +|++|+.|..++.|+++++.||+|++
T Consensus 84 --l~~vkD~~~rsyf~RlvDl~--~~------~vvweqELY~~f~Y~~~r~~FHtFe~ 131 (169)
T 2ifs_A 84 --ACLVKDNPQRSYFLRIFDIK--DG------KLLWEQELYNNFVYNSPRGYFHTFAG 131 (169)
T ss_dssp --EEEEEETTTTEEEEEEEETT--TC------CCCEEEECCSSCCCBCCCSSEEEEEC
T ss_pred --EEEEEECCCCeEEEEEEEcc--CC------eEEEEeecccceeeccCCCeEEEeec
Confidence 677788776664 999985 55 89999999999999999999999986
No 15
>1mke_A WIP - N-WAsp, fusion protein consisting of wiskott-aldrich syndrome protein interacting protein...; polyproline, protein-protein complex; NMR {Rattus norvegicus} SCOP: b.55.1.4
Probab=98.75 E-value=3.8e-08 Score=74.07 Aligned_cols=104 Identities=13% Similarity=0.092 Sum_probs=78.2
Q ss_pred ccccccCCCcceeecCCCcceeeecCCCCccccceEEEEEEEEEEeCCCCCeEECCCCCCeEEEEEEEeCCCCce--EEE
Q psy9200 3 IPILSSIPHTKRIHNCDSSYVATVNTSHYATEQSIASARASVMIYDDVNKKWIPSGSSSGLSKVHVFQHQVNNTF--RVV 80 (120)
Q Consensus 3 ~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~E~~I~~vrA~VM~yDd~tk~WvP~gg~~glS~V~i~~~~~~n~f--RIv 80 (120)
+|.-.++|-.---++=.+|+-+.++.----+=+.++++-|++++.|+. ++|.... .|+ +.+-+|..+++| ||+
T Consensus 9 ~~~~~~~ps~l~~~~~~~~~~~~lf~llG~~C~~lataVaqLy~a~~~-~~W~~~~--~Ga--l~~VkD~~~rsyf~Rlv 83 (152)
T 1mke_A 9 VQTTKSYPSKLARNESRGSGSGSLFSFLGKKCVTMSSAVVQLYAADRN-CMWSKKC--SGV--ACLVKDNPQRSYFLRIF 83 (152)
T ss_dssp CCCCCCCSTTTTCSSSSCCCCCCCSCSSCCCCEEEEEEEEEEEEEETT-TEEEEEE--EEE--EEEEEETTTTEEEEEEE
T ss_pred ccccccCCchhhccccccchHHHHHHHhCCCCcEEEEeeEEEEEECCC-CceEecC--ceE--EEEEEECCCCeEEEEEE
Confidence 344555665544444455666666655444457899999999999876 7899864 344 677788766664 999
Q ss_pred EeeeccccccccceEEEeeecCCCCeeeeecCcceeecc
Q psy9200 81 GRKLQNQEYKADYTVSINIPNKKGSNMNITITSYHYSKS 119 (120)
Q Consensus 81 G~rlqD~~~~~~~~VvINc~I~~~l~YnkatptFHqWrD 119 (120)
..+ ++ ++++|+.|..++.|+++.|.||+|.+
T Consensus 84 Dl~--~~------~viweqELY~~f~Y~~~r~~FHtFe~ 114 (152)
T 1mke_A 84 DIK--DG------KLLWEQELYNNFVYNSPRGYFHTFAG 114 (152)
T ss_dssp CSS--SC------SEEEEEECCSSCCCBCSSSSEEEEEC
T ss_pred Ecc--CC------eEEEEeecccceeeccCCCeEEEEec
Confidence 985 55 89999999999999999999999986
No 16
>1k5d_B RAN-specific GTPase-activating protein; ranbp1, rangap, GAP, signal transduction, nuclear transport, GTP hydrolysis, ground state; HET: GNP; 2.70A {Homo sapiens} SCOP: b.55.1.3 PDB: 1k5g_B*
Probab=98.40 E-value=1.5e-06 Score=67.63 Aligned_cols=75 Identities=13% Similarity=0.215 Sum_probs=63.7
Q ss_pred cccceEEEEEEEEEE--eCCCCCeEECCCCCCeEEEEEEEeCCCCceEEEEeeeccccccccceEEEeeecCCCCeeeee
Q psy9200 33 TEQSIASARASVMIY--DDVNKKWIPSGSSSGLSKVHVFQHQVNNTFRVVGRKLQNQEYKADYTVSINIPNKKGSNMNIT 110 (120)
Q Consensus 33 ~E~~I~~vrA~VM~y--Dd~tk~WvP~gg~~glS~V~i~~~~~~n~fRIvG~rlqD~~~~~~~~VvINc~I~~~l~Ynka 110 (120)
.|..||++||-+|.| |..++.|---| .-.+.|.++...+.+||+-|+-+-+ +|+||..|.++|+|.+.
T Consensus 44 dEe~lf~~RaKLf~f~~d~~~~~WKERG----vG~lkIlk~k~t~k~RlvMR~d~~~------kV~LN~~I~~~m~~~~~ 113 (201)
T 1k5d_B 44 DEEELFKMRAKLFRFASENDLPEWKERG----TGDVKLLKHKEKGAIRLLMRRDKTL------KICANHYITPMMELKPN 113 (201)
T ss_dssp SCCCSEEEEEEEEEECCTTSSCCEEEEE----EEEEEEEECSSSCCEEEEEEETTTC------CEEEEEECCSSCCCCBC
T ss_pred cceEEEEEeeeEEEecccccCCCccccc----eEEEEEEEcCCCCcEEEEEEECCcc------eEEEeeEecCCceeeec
Confidence 589999999999999 77778898844 5679999999999999999987777 89999999999999875
Q ss_pred --cCcceee
Q psy9200 111 --ITSYHYS 117 (120)
Q Consensus 111 --tptFHqW 117 (120)
+...-.|
T Consensus 114 ~~s~ks~v~ 122 (201)
T 1k5d_B 114 AGSDRAWVW 122 (201)
T ss_dssp SSCSSEEEE
T ss_pred CCCCceEEE
Confidence 4444445
No 17
>4hat_B RAN-specific GTPase-activating protein 1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_B* 4hav_B* 4haw_B* 4hax_B* 4hay_B* 4haz_B* 4hb0_B* 4hb2_B* 4hb3_B* 4hb4_B* 4gmx_B* 4gpt_B*
Probab=98.18 E-value=7.4e-06 Score=60.32 Aligned_cols=69 Identities=16% Similarity=0.287 Sum_probs=60.3
Q ss_pred ccccceEEEEEEEEEEeCCCCCeEECCCCCCeEEEEEEEeCCCCceEEEEeeeccccccccceEEEeeecCCCCeeeee
Q psy9200 32 ATEQSIASARASVMIYDDVNKKWIPSGSSSGLSKVHVFQHQVNNTFRVVGRKLQNQEYKADYTVSINIPNKKGSNMNIT 110 (120)
Q Consensus 32 ~~E~~I~~vrA~VM~yDd~tk~WvP~gg~~glS~V~i~~~~~~n~fRIvG~rlqD~~~~~~~~VvINc~I~~~l~Ynka 110 (120)
-.|..++++||-+|.+|+.++.|---| .-.+.|.++...+.+||+-|+-+-+ +|++|..|.++|+|.+.
T Consensus 20 E~E~~lf~~raKLf~f~~~~~~WkerG----~G~lkilk~k~~~k~RllmR~d~~~------kv~lN~~i~~~m~~~~~ 88 (140)
T 4hat_B 20 EDEEVLYKVRAKLFRFDKDAKEWKERG----TGDCKFLKNKKTNKVRILMRRDKTL------KICANHIIAPEYTLKPN 88 (140)
T ss_dssp TTEEEEEEEEEEEEEEETTTTEEEEEE----EEEEEEEEETTTCCEEEEEECTTTC------CEEEEEECCTTCCCBCC
T ss_pred cCeeEEEEEeEEEEEEcCCCCCccccc----EEEEEEEEcCCCCeEEEEEEecCcc------eEEEEeEecCCeEEeEc
Confidence 357899999999999999888997744 5579999999999999999976556 89999999999999975
No 18
>3m1i_B RAN-specific GTPase-activating protein 1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae}
Probab=98.03 E-value=2.6e-05 Score=60.51 Aligned_cols=68 Identities=16% Similarity=0.287 Sum_probs=60.0
Q ss_pred cccceEEEEEEEEEEeCCCCCeEECCCCCCeEEEEEEEeCCCCceEEEEeeeccccccccceEEEeeecCCCCeeeee
Q psy9200 33 TEQSIASARASVMIYDDVNKKWIPSGSSSGLSKVHVFQHQVNNTFRVVGRKLQNQEYKADYTVSINIPNKKGSNMNIT 110 (120)
Q Consensus 33 ~E~~I~~vrA~VM~yDd~tk~WvP~gg~~glS~V~i~~~~~~n~fRIvG~rlqD~~~~~~~~VvINc~I~~~l~Ynka 110 (120)
.|..|+++||-+|.+|..++.|--- |.-.+.|.++...+.+||+-|+-+-+ +|+||..|.++|+|...
T Consensus 72 dEe~lf~~RaKLf~f~~~~~~WKER----GvG~lkilk~ket~k~RllMR~d~~~------kV~LN~~I~~~m~~~~~ 139 (191)
T 3m1i_B 72 DEEVLYKVRAKLFRFDADAKEWKER----GTGDCKFLKNKKTNKVRILMRRDKTL------KICANHIIAPEYTLKPN 139 (191)
T ss_dssp TEEEEEEEEEEEEEEETTTTEEEEE----EEEEEEEEEETTTCCEEEEEECTTTC------CEEEEEECCTTCCCBCC
T ss_pred ceeeeeEEeeEEEEEecCCCCccce----eEEEEEEEEcCCCCeEEEEEEecCcc------eEEEeeecCCCcEEeEC
Confidence 5889999999999999988899864 45679999999889999999976556 89999999999999986
No 19
>2ec1_A Nucleoporin 50 kDa; ranbp domain, nuclear pore-associated protein 60 kDa-like, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.98 E-value=0.0021 Score=46.08 Aligned_cols=65 Identities=15% Similarity=0.226 Sum_probs=52.7
Q ss_pred cccceEEEEEEEEEEeCCCCCeEECCCCCCeEEEEEEEeCCCCceEEEEeeecc-ccccccceEEEeeecCCCCeeeee
Q psy9200 33 TEQSIASARASVMIYDDVNKKWIPSGSSSGLSKVHVFQHQVNNTFRVVGRKLQN-QEYKADYTVSINIPNKKGSNMNIT 110 (120)
Q Consensus 33 ~E~~I~~vrA~VM~yDd~tk~WvP~gg~~glS~V~i~~~~~~n~fRIvG~rlqD-~~~~~~~~VvINc~I~~~l~Ynka 110 (120)
.|..|++.||-+|.+++ +.|---| +-.+.|..+. .+.+||+=|+-+- + +|++|..|.++|+|...
T Consensus 11 ~E~~lf~~raKLf~~~~--~~WkERG----vG~lki~~~k-~~k~RllmR~d~~~~------kv~lN~~i~~~m~~~~~ 76 (125)
T 2ec1_A 11 EEDAFYSKKCKLFYKKD--NEFKEKG----IGTLHLKPTA-NQKTQLLVRADTNLG------NILLNVLIPPNMPCTRT 76 (125)
T ss_dssp CCSCSEEEEEEEEEECS--SSEEEEE----EEEEEEEECS-SSSEEEEEEESSSSC------CBSCCEECCSSCCEECC
T ss_pred CceeEEEEeeEEEEecC--CCccccc----EEEEEeeecC-CCcEEEEEEecCCCC------EEEEeeEEcCCCeEEec
Confidence 57899999999999976 6797754 4467776654 5799999996542 5 89999999999999975
No 20
>2lyd_A Decapping protein 1; DCP1, XRN1, transcription-protein binding complex; NMR {Drosophila melanogaster}
Probab=41.95 E-value=31 Score=24.63 Aligned_cols=60 Identities=8% Similarity=0.246 Sum_probs=36.7
Q ss_pred EEEEEEEEEEeCCCCCeEECCCCCCeEEEEEEEeCCCCceE--EEEeeeccccccccceEEEeeecCCCCeeee
Q psy9200 38 ASARASVMIYDDVNKKWIPSGSSSGLSKVHVFQHQVNNTFR--VVGRKLQNQEYKADYTVSINIPNKKGSNMNI 109 (120)
Q Consensus 38 ~~vrA~VM~yDd~tk~WvP~gg~~glS~V~i~~~~~~n~fR--IvG~rlqD~~~~~~~~VvINc~I~~~l~Ynk 109 (120)
..+-|.|..+|+++++|.-.+= .| ..-||+....-.|. |--|+..|. .+. .|.+++.+..
T Consensus 34 ~a~~v~vY~f~~~~~~W~K~~i-EG--~LFv~~R~~~P~~~~ivLNR~~~~n-------~~~--~l~~~~~~e~ 95 (134)
T 2lyd_A 34 SSSHVAFYTFNSSQNEWEKTDV-EG--AFFIYHRNAEPFHSIFINNRLNTTS-------FVE--PITGSLELQS 95 (134)
T ss_dssp EEEEEEEEEEETTTTEEEEEEE-EE--EEEEEECSSSSSEEEEEEETTTTEE-------EEE--ECCSSCEEEE
T ss_pred hCCeEEEEEecCCcCceeEcCC-cc--eEEEEEccCCCceEEEEEcCCCCcc-------eeE--EcCCCcEEEe
Confidence 3467888999999999998883 22 25677765544444 444443333 222 4566666554
No 21
>2oqb_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase, transcriptional regulati activation domain; 1.69A {Rattus norvegicus}
Probab=26.11 E-value=1.8e+02 Score=20.73 Aligned_cols=70 Identities=7% Similarity=0.021 Sum_probs=51.4
Q ss_pred ccccceEEEEEEEEEEeCCCCCeEECCCCCCeEEEEEEEeCCCCceEEEEeeeccccccccceEEEeeecCCCCeeeeec
Q psy9200 32 ATEQSIASARASVMIYDDVNKKWIPSGSSSGLSKVHVFQHQVNNTFRVVGRKLQNQEYKADYTVSINIPNKKGSNMNITI 111 (120)
Q Consensus 32 ~~E~~I~~vrA~VM~yDd~tk~WvP~gg~~glS~V~i~~~~~~n~fRIvG~rlqD~~~~~~~~VvINc~I~~~l~Ynkat 111 (120)
|.-.|.+.. ..|.+++|+.+.=.|-.. +...++.+-+++..-.-+|.. ++ ...+.+|.|.++-.+-+.-
T Consensus 4 ~~~~~~f~g-v~v~~I~d~~~~~~~ky~-~q~v~L~~~ydpqg~sv~i~~----~~-----~~~l~ef~V~~~TEc~rVG 72 (117)
T 2oqb_A 4 MATVSVFPG-ARLLTIGDANGEIQRHAE-QQALRLEVRAGPDAAGIALYS----HE-----DVCVFKCSVSRETECSRVG 72 (117)
T ss_dssp CCCCEEEEE-EEEEEEECTTSSCEEEEE-EEEEEEEEEECSSEEEEEEEC----TT-----CCEEEEEEEETTSEEEEET
T ss_pred eeeeeecCc-eEEEEEeCCCCcEeeccc-CceEEEEEEECCCCcEEEEEc----CC-----CeEEEEEEecCCccceeec
Confidence 444566664 789999999988777443 346799999999877766644 21 3789999999988877654
Q ss_pred C
Q psy9200 112 T 112 (120)
Q Consensus 112 p 112 (120)
.
T Consensus 73 k 73 (117)
T 2oqb_A 73 R 73 (117)
T ss_dssp T
T ss_pred C
Confidence 3
No 22
>1dyo_A Endo-1,4-beta-xylanase Y; carbohydrate-binding module, xylan-binding; 2.1A {Clostridium thermocellum} SCOP: b.18.1.7 PDB: 1h6y_A 1h6x_A
Probab=20.30 E-value=52 Score=23.07 Aligned_cols=13 Identities=15% Similarity=0.662 Sum_probs=9.1
Q ss_pred EeCCCCCeEECCC
Q psy9200 47 YDDVNKKWIPSGS 59 (120)
Q Consensus 47 yDd~tk~WvP~gg 59 (120)
+++++.+|.|.|+
T Consensus 15 FE~g~~gW~~~g~ 27 (160)
T 1dyo_A 15 FEGSVGQWTARGP 27 (160)
T ss_dssp CSSCCTTCEEETT
T ss_pred cCCCCCCEEeecc
Confidence 3556678998775
Done!