RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy9200
(120 letters)
>1evh_A WH1 domain, protein (MENA EVH1 domain); molecular recognition,
actin dynamics, contractIle protein; 1.80A {Mus
musculus} SCOP: b.55.1.4 PDB: 2xqn_M 2iyb_A
Length = 112
Score = 76.9 bits (189), Expect = 9e-20
Identities = 43/83 (51%), Positives = 55/83 (66%), Gaps = 6/83 (7%)
Query: 34 EQSIASARASVMIYDDVNKKWIPSGSSSGLSKVHVFQHQVNNTFRVVGRKLQNQEYKADY 93
EQSI ARA+VM+YDD NKKW+P+G S+G S+VH++ H NNTFRVVGRK+Q D+
Sbjct: 3 EQSICQARAAVMVYDDANKKWVPAGGSTGFSRVHIYHHTGNNTFRVVGRKIQ------DH 56
Query: 94 TVSINIPNKKGSNMNITITSYHY 116
V IN KG N ++H
Sbjct: 57 QVVINCAIPKGLKYNQATQTFHQ 79
>1xod_A Spred1; sprouty, EVH1, peptide-binding, signaling protein; 1.15A
{Xenopus tropicalis} SCOP: b.55.1.4 PDB: 1tj6_A
Length = 118
Score = 69.2 bits (169), Expect = 1e-16
Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 6/62 (9%)
Query: 32 ATEQSIASARASVMIYDDVNKKWIPSGSSSGLSKVHVFQ-----HQVNNTFRVVGRKLQN 86
++ S A RA VM DD + W+ G GLS V V + F V G +L++
Sbjct: 1 GSDDSYARVRAVVMTRDDSSGGWLQLG-GGGLSSVTVSKTLQPGDSGGTEFLVHGERLRD 59
Query: 87 QE 88
+
Sbjct: 60 KT 61
>2jp2_A Spred-2, sprouty-related, EVH1 domain-containing protein 2;
solution structure, structural genomics, structural
genomics consortium, SGC; NMR {Homo sapiens}
Length = 126
Score = 68.5 bits (167), Expect = 2e-16
Identities = 18/96 (18%), Positives = 35/96 (36%), Gaps = 10/96 (10%)
Query: 24 ATVNTSHYATEQSIASARASVMIYDDVNKKWIPSG----SSSGLSKVHVFQHQVNNTFRV 79
+ +H + I +A VM DD + W P S G+ KV + + F +
Sbjct: 2 SMTEETHPDDDSYIVRVKAVVMTRDDSSGGWFPQEGGGISRVGVCKVMHPEGNGRSGFLI 61
Query: 80 VGRKLQNQEYKADYTVSINIPNKKGSNMNITITSYH 115
G + +++ V + +K ++H
Sbjct: 62 HGERQKDKL------VVLECYVRKDLVYTKANPTFH 91
>1egx_A VAsp, vasodilator-stimulated phosphoprotein; EVH1, VAsp-ENA,
poly-proline-binding domain, signaling protein; NMR
{Homo sapiens} SCOP: b.55.1.4
Length = 115
Score = 67.0 bits (163), Expect = 7e-16
Identities = 33/84 (39%), Positives = 49/84 (58%), Gaps = 6/84 (7%)
Query: 34 EQSIASARASVMIYDDVNKKWIPSGSS-SGLSKVHVFQHQVNNTFRVVGRKLQNQEYKAD 92
E I S+RA+VM+YDD NK+W+P+G+ S+V ++ + N+FRVVGRK+Q D
Sbjct: 3 ETVICSSRATVMLYDDGNKRWLPAGTGPQAFSRVQIYHNPTANSFRVVGRKMQP-----D 57
Query: 93 YTVSINIPNKKGSNMNITITSYHY 116
V IN +G N ++H
Sbjct: 58 QQVVINCAIVRGVKYNQATPNFHQ 81
>3syx_A Sprouty-related, EVH1 domain-containing protein 1; WH1 domain,
human sprouty-related, EVH1 domain-containing PR
Q7Z699; 2.45A {Homo sapiens}
Length = 130
Score = 65.5 bits (159), Expect = 5e-15
Identities = 22/65 (33%), Positives = 32/65 (49%), Gaps = 6/65 (9%)
Query: 29 SHYATEQSIASARASVMIYDDVNKKWIPSGSSSGLSKVHVFQHQVN-----NTFRVVGRK 83
H+ + S A RA VM DD + W+P G SGLS V VF+ F + G +
Sbjct: 5 HHHHSHMSYARVRAVVMTRDDSSGGWLPLG-GSGLSSVTVFKVPHQEENGCADFFIRGER 63
Query: 84 LQNQE 88
L+++
Sbjct: 64 LRDKM 68
>1qc6_A EVH1 domain from ENA/VAsp-like protein; AN incomplete seven
stranded anti-parallel beta barrel closed by AN alpha
helix, EVH1 domain; 2.60A {Mus musculus} SCOP: b.55.1.4
Length = 130
Score = 64.8 bits (157), Expect = 9e-15
Identities = 36/85 (42%), Positives = 52/85 (61%), Gaps = 7/85 (8%)
Query: 33 TEQSIASARASVMIYDDVNKKWIP-SGSSSGLSKVHVFQHQVNNTFRVVGRKLQNQEYKA 91
+EQSI ARASVM+YDD +KKW+P G S+++++ + ++TFRVVG KLQ+Q+
Sbjct: 2 SEQSICQARASVMVYDDTSKKWVPIKPGQQGFSRINIYHNTASSTFRVVGVKLQDQQ--- 58
Query: 92 DYTVSINIPNKKGSNMNITITSYHY 116
V IN KG N ++H
Sbjct: 59 ---VVINYSIVKGLKYNQATPTFHQ 80
>1ddw_A GLGF-domain protein homer; pleckstrin homology domain fold,
signaling protein; 1.70A {Rattus norvegicus} SCOP:
b.55.1.4 PDB: 1ddv_A 2p8v_A 1i7a_A*
Length = 120
Score = 64.0 bits (155), Expect = 1e-14
Identities = 20/84 (23%), Positives = 26/84 (30%), Gaps = 11/84 (13%)
Query: 34 EQSIASARASVMIYDDVNKK-WIPSGSSSGLSKVHVFQHQVNNTFRVVGRKLQNQEYKAD 92
EQ I S RA V D KK W+P +S V F N +R++
Sbjct: 3 EQPIFSTRAHVFQIDPNTKKNWVP--TSKHAVTVSYFYDSTRNVYRIISLD--------G 52
Query: 93 YTVSINIPNKKGSNMNITITSYHY 116
IN T +
Sbjct: 53 SKAIINSTITPNMTFTKTSQKFGQ 76
>1i2h_A PSD-ZIP45(homer-1C/VESL-1L); enabled VAsp homology 1 domain,
signaling protein; 1.80A {Rattus norvegicus} SCOP:
b.55.1.4
Length = 168
Score = 58.7 bits (141), Expect = 3e-12
Identities = 20/84 (23%), Positives = 26/84 (30%), Gaps = 11/84 (13%)
Query: 34 EQSIASARASVMIYDDVNKK-WIPSGSSSGLSKVHVFQHQVNNTFRVVGRKLQNQEYKAD 92
EQ I S RA V D KK W+P +S V F N +R++
Sbjct: 8 EQPIFSTRAHVFQIDPNTKKNWVP--TSKHAVTVSYFYDSTRNVYRIISLD--------G 57
Query: 93 YTVSINIPNKKGSNMNITITSYHY 116
IN T +
Sbjct: 58 SKAIINSTITPNMTFTKTSQKFGQ 81
>1xke_A RAN-binding protein 2; beta barrel, pleckstrin-homology (PH)
domain, phosphotyrosine-binding (PTB) domain, protein
transport; NMR {Homo sapiens} SCOP: b.55.1.3
Length = 130
Score = 39.2 bits (91), Expect = 4e-05
Identities = 16/81 (19%), Positives = 37/81 (45%), Gaps = 6/81 (7%)
Query: 34 EQSIASARASVMIYDDVNKKWIPSGSSSGLSKVHVFQHQVNNTFRVVGRKLQNQEYKADY 93
E+ + S R + +D +W GL + + +++VN R++ R+ Q + A++
Sbjct: 7 EKVLYSQRVKLFRFDAEVSQWKE----RGLGNLKILKNEVNGKLRMLMRREQVLKVCANH 62
Query: 94 TV--SINIPNKKGSNMNITIT 112
+ ++N+ GS+
Sbjct: 63 WITTTMNLKPLSGSDRAWMWL 83
>3n7c_A ABR034WP; nuclear pore complex, NUP2, RAN-binding domain,
nucleoporin, structural genomics, PSI-2, protein
structure initiative; 2.26A {Ashbya gossypii} PDB:
3oan_A
Length = 130
Score = 38.4 bits (89), Expect = 8e-05
Identities = 12/85 (14%), Positives = 29/85 (34%), Gaps = 8/85 (9%)
Query: 34 EQSIASARASVMIYDDVNKKWIPSGSSSGLSKVHVFQH-QVNNTFRVVGRKLQNQEYKAD 92
E+ + +A ++I+D K + G+ ++ + + RV+ R +
Sbjct: 10 EEVLFCEKAKLLIFDSDTKGYTS----RGVGELKLLRKKDDKGKVRVLCRSEGMGHVLLN 65
Query: 93 YTVSINI---PNKKGSNMNITITSY 114
+V + P + I
Sbjct: 66 TSVVKSFKYQPIDADNENLIKWPII 90
>2crf_A RAN binding protein 3; RAN_BP1 domain, ranbp3, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: b.55.1.3
Length = 150
Score = 38.5 bits (89), Expect = 1e-04
Identities = 15/89 (16%), Positives = 35/89 (39%), Gaps = 4/89 (4%)
Query: 34 EQSIASARASVMIYDDVNKKWIPSGSSSGLSKVHVFQHQVNNTF--RVVGRKLQNQEYKA 91
E ++ + + ++D ++ W+ G GL +++ + T R+V R +
Sbjct: 26 ESNVLQMQCKLFVFDKTSQSWVERG--RGLLRLNDMASTDDGTLQSRLVMRTQGSLRLIL 83
Query: 92 DYTVSINIPNKKGSNMNITITSYHYSKSK 120
+ + + K S +I IT+
Sbjct: 84 NTKLWAQMQIDKASEKSIHITAMDTEDQG 112
>2y8g_A Ranbp3-B, RAN-binding protein 3; protein transport, CRM1-mediated
nuclear export; 1.61A {Homo sapiens} PDB: 2y8f_A
Length = 138
Score = 36.5 bits (84), Expect = 4e-04
Identities = 15/81 (18%), Positives = 34/81 (41%), Gaps = 4/81 (4%)
Query: 34 EQSIASARASVMIYDDVNKKWIPSGSSSGLSKVHVFQHQVNNTF--RVVGRKLQNQEYKA 91
E ++ + + ++D ++ W+ G GL +++ + T R+V R +
Sbjct: 14 ESNVLQMQCKLFVFDKTSQSWVAVG--RGLLRLNDMASTDDGTLQSRLVMRTQGSLRLIL 71
Query: 92 DYTVSINIPNKKGSNMNITIT 112
+ + + K S +I IT
Sbjct: 72 NTKLWAQMQIDKASEKSIRIT 92
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 31.9 bits (72), Expect = 0.034
Identities = 18/94 (19%), Positives = 35/94 (37%), Gaps = 22/94 (23%)
Query: 7 SSIPHTKRIHNCDSSYVATVNT---SHYATEQSIASARASVMIYDDVNKKWIPSGSSSGL 63
S IP ++R + ++ V + SH AS +I D+ K + + +
Sbjct: 405 SRIPFSERKLKFSNRFL-PVASPFHSHLLVP-------ASDLINKDLVKNNVSFNAKD-I 455
Query: 64 SKVHVFQHQVNNTFRVVGRKLQNQEYKADYTVSI 97
++ V+ +TF G L + + I
Sbjct: 456 -QIPVY-----DTFD--GSDL--RVLSGSISERI 479
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 26.8 bits (58), Expect = 1.4
Identities = 9/44 (20%), Positives = 18/44 (40%), Gaps = 18/44 (40%)
Query: 34 EQSIASARASVMIY-DDVNKKWIPSGSSSGLSKVHVFQHQVNNT 76
+Q++ +AS+ +Y DD S+ L+ + T
Sbjct: 19 KQALKKLQASLKLYADD---------SAPALA--------IKAT 45
>3ohs_X Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; dimeric
dihydrodiol dehydrogenase, MDD, oxidoreductase; 1.90A
{Macaca fascicularis} PDB: 2o48_X 2poq_X* 2o4u_X
Length = 334
Score = 26.5 bits (59), Expect = 2.7
Identities = 5/21 (23%), Positives = 7/21 (33%), Gaps = 2/21 (9%)
Query: 22 YVATVNTSHYATEQSIASARA 42
YV T + H + A
Sbjct: 71 YVGTQHPQHK--AAVMLCLAA 89
>3rc1_A Sugar 3-ketoreductase; sugar biosynthesis, TDP binding, NADP
binding binding protein; HET: TLO NAP; 1.71A
{Actinomadura kijaniata} PDB: 3rbv_A* 3rc2_A* 3rcb_A*
3rc7_A* 3rc9_A*
Length = 350
Score = 25.7 bits (57), Expect = 3.8
Identities = 6/21 (28%), Positives = 7/21 (33%), Gaps = 2/21 (9%)
Query: 22 YVATVNTSHYATEQSIASARA 42
YV H E + RA
Sbjct: 94 YVPLPAVLHA--EWIDRALRA 112
>3evn_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics; 2.00A
{Streptococcus agalactiae serogroup V}
Length = 329
Score = 25.7 bits (57), Expect = 4.4
Identities = 9/21 (42%), Positives = 13/21 (61%), Gaps = 2/21 (9%)
Query: 22 YVATVNTSHYATEQSIASARA 42
YVAT+N HY + + A+ A
Sbjct: 72 YVATINQDHY--KVAKAALLA 90
>2ho3_A Oxidoreductase, GFO/IDH/MOCA family; streptococcus pneumonia
reductive methylation, structural genomics, PSI-2,
protein initiative; HET: MLY; 2.00A {Streptococcus
pneumoniae} PDB: 2ho5_A
Length = 325
Score = 25.4 bits (56), Expect = 4.8
Identities = 7/21 (33%), Positives = 13/21 (61%), Gaps = 2/21 (9%)
Query: 22 YVATVNTSHYATEQSIASARA 42
Y+A+ N+ H+ Q+ A+ A
Sbjct: 67 YIASPNSLHF--AQAKAALSA 85
>3e9m_A Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, PSI-II,
dimeric dihydodiol dehydrogenase, structural genomics;
2.70A {Enterococcus faecalis}
Length = 330
Score = 25.7 bits (57), Expect = 4.9
Identities = 5/21 (23%), Positives = 8/21 (38%), Gaps = 2/21 (9%)
Query: 22 YVATVNTSHYATEQSIASARA 42
Y+ T N HY + +
Sbjct: 72 YIPTYNQGHY--SAAKLALSQ 90
>1ydw_A AX110P-like protein; structural genomics, protein structure
initiative, center for eukaryotic structural genomics,
CESG, AT4G09670; 2.49A {Arabidopsis thaliana} SCOP:
c.2.1.3 d.81.1.5 PDB: 2q4e_A
Length = 362
Score = 25.0 bits (55), Expect = 7.1
Identities = 6/21 (28%), Positives = 9/21 (42%), Gaps = 2/21 (9%)
Query: 22 YVATVNTSHYATEQSIASARA 42
YV + H E +I +A
Sbjct: 76 YVPLPTSLHV--EWAIKAAEK 94
>1ntl_A CRRY-IG; immunology, complement, glycoprotein, SCR, CCP, immune
system; NMR {Mus musculus}
Length = 551
Score = 25.0 bits (54), Expect = 8.8
Identities = 8/34 (23%), Positives = 13/34 (38%)
Query: 49 DVNKKWIPSGSSSGLSKVHVFQHQVNNTFRVVGR 82
+V W ++ + Q N+TFR V
Sbjct: 376 EVQFSWFVDDVEVHTAQTQPREEQFNSTFRSVSE 409
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.313 0.124 0.351
Gapped
Lambda K H
0.267 0.0543 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,665,412
Number of extensions: 79937
Number of successful extensions: 129
Number of sequences better than 10.0: 1
Number of HSP's gapped: 123
Number of HSP's successfully gapped: 27
Length of query: 120
Length of database: 6,701,793
Length adjustment: 82
Effective length of query: 38
Effective length of database: 4,412,271
Effective search space: 167666298
Effective search space used: 167666298
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 51 (23.8 bits)