RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy9200
(120 letters)
>d1i2ha_ b.55.1.4 (A:) Homer {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 145
Score = 68.4 bits (167), Expect = 2e-16
Identities = 20/87 (22%), Positives = 27/87 (31%), Gaps = 11/87 (12%)
Query: 31 YATEQSIASARASVMIYDDVNKK-WIPSGSSSGLSKVHVFQHQVNNTFRVVGRKLQNQEY 89
+ EQ I S RA V D KK W+P +S V F N +R++
Sbjct: 2 FMGEQPIFSTRAHVFQIDPNTKKNWVP--TSKHAVTVSYFYDSTRNVYRIISLD------ 53
Query: 90 KADYTVSINIPNKKGSNMNITITSYHY 116
IN T +
Sbjct: 54 --GSKAIINSTITPNMTFTKTSQKFGQ 78
>d1xoda1 b.55.1.4 (A:10-123) Sprouty-related, EVH1
domain-containing protein 1, Spred-1 {Western clawed
frog (Xenopus tropicalis) [TaxId: 8364]}
Length = 114
Score = 67.2 bits (164), Expect = 2e-16
Identities = 19/69 (27%), Positives = 29/69 (42%), Gaps = 6/69 (8%)
Query: 36 SIASARASVMIYDDVNKKWIPSGSSSGLSKVHV-----FQHQVNNTFRVVGRKLQNQEYK 90
S A RA VM DD + W+ G GLS V V F V G +L+++
Sbjct: 1 SYARVRAVVMTRDDSSGGWLQLG-GGGLSSVTVSKTLQPGDSGGTEFLVHGERLRDKTVV 59
Query: 91 ADYTVSINI 99
+ + ++
Sbjct: 60 LECVLRRDL 68
>d1evha_ b.55.1.4 (A:) Enabled {Mouse (Mus musculus) [TaxId: 10090]}
Length = 111
Score = 65.8 bits (160), Expect = 8e-16
Identities = 42/82 (51%), Positives = 55/82 (67%), Gaps = 6/82 (7%)
Query: 34 EQSIASARASVMIYDDVNKKWIPSGSSSGLSKVHVFQHQVNNTFRVVGRKLQNQEYKADY 93
EQSI ARA+VM+YDD NKKW+P+G S+G S+VH++ H NNTFRVVGRK+Q+ +
Sbjct: 2 EQSICQARAAVMVYDDANKKWVPAGGSTGFSRVHIYHHTGNNTFRVVGRKIQD------H 55
Query: 94 TVSINIPNKKGSNMNITITSYH 115
V IN KG N ++H
Sbjct: 56 QVVINCAIPKGLKYNQATQTFH 77
>d1egxa_ b.55.1.4 (A:) Vasodilator-stimulated phosphoprotein (VASP)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 115
Score = 56.5 bits (136), Expect = 3e-12
Identities = 32/83 (38%), Positives = 46/83 (55%), Gaps = 6/83 (7%)
Query: 34 EQSIASARASVMIYDDVNKKWIP-SGSSSGLSKVHVFQHQVNNTFRVVGRKLQNQEYKAD 92
E I S+RA+VM+YDD NK+W+P S+V ++ + N+FRVVGRK+Q D
Sbjct: 3 ETVICSSRATVMLYDDGNKRWLPAGTGPQAFSRVQIYHNPTANSFRVVGRKMQP-----D 57
Query: 93 YTVSINIPNKKGSNMNITITSYH 115
V IN +G N ++H
Sbjct: 58 QQVVINCAIVRGVKYNQATPNFH 80
>d1xkea1 b.55.1.3 (A:7-124) Ran-binding protein 2 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 118
Score = 49.9 bits (119), Expect = 1e-09
Identities = 15/79 (18%), Positives = 35/79 (44%), Gaps = 4/79 (5%)
Query: 34 EQSIASARASVMIYDDVNKKWIPSGSSSGLSKVHVFQHQVNNTFRVVGRKLQNQEYKADY 93
E+ + S R + +D +W GL + + +++VN R++ R+ Q + A++
Sbjct: 1 EKVLYSQRVKLFRFDAEVSQW----KERGLGNLKILKNEVNGKLRMLMRREQVLKVCANH 56
Query: 94 TVSINIPNKKGSNMNITIT 112
++ + K S +
Sbjct: 57 WITTTMNLKPLSGSDRAWM 75
>d2crfa1 b.55.1.3 (A:8-144) Ran binding protein 3 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 137
Score = 49.9 bits (119), Expect = 2e-09
Identities = 12/87 (13%), Positives = 28/87 (32%)
Query: 34 EQSIASARASVMIYDDVNKKWIPSGSSSGLSKVHVFQHQVNNTFRVVGRKLQNQEYKADY 93
E ++ + + ++D ++ W+ G R+V R + +
Sbjct: 19 ESNVLQMQCKLFVFDKTSQSWVERGRGLLRLNDMASTDDGTLQSRLVMRTQGSLRLILNT 78
Query: 94 TVSINIPNKKGSNMNITITSYHYSKSK 120
+ + K S +I IT+
Sbjct: 79 KLWAQMQIDKASEKSIHITAMDTEDQG 105
>d1rrpb_ b.55.1.3 (B:) Nuclear pore complex protein Nup358 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 134
Score = 46.0 bits (109), Expect = 5e-08
Identities = 16/86 (18%), Positives = 39/86 (45%), Gaps = 6/86 (6%)
Query: 34 EQSIASARASVMIYDDVNKKWIPSGSSSGLSKVHVFQHQVNNTFRVVGRKLQNQEYKADY 93
E+ RA + +D +K+W G+ V + +H+ + R++ R+ Q + A++
Sbjct: 21 EEEFFCNRAKLFRFDVESKEWKE----RGIGNVKILRHKTSGKIRLLMRREQVLKICANH 76
Query: 94 TV--SINIPNKKGSNMNITITSYHYS 117
+ + + GS+ + + Y+
Sbjct: 77 YISPDMKLTPNAGSDRSFVWHALDYA 102
>d1k5db_ b.55.1.3 (B:) Ran-binding protein 1, Ranbp1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 146
Score = 39.1 bits (91), Expect = 2e-05
Identities = 10/53 (18%), Positives = 21/53 (39%), Gaps = 2/53 (3%)
Query: 34 EQSIASARASVMIYDDVNKKWIPSGSSSGLSKVHVFQHQVNNTFRVVGRKLQN 86
E+ + RA + + N P G V + +H+ R++ R+ +
Sbjct: 24 EEELFKMRAKLFRFASENDL--PEWKERGTGDVKLLKHKEKGAIRLLMRRDKT 74
>d1viga_ d.51.1.1 (A:) Vigilin {Human (Homo sapiens) [TaxId: 9606]}
Length = 71
Score = 23.9 bits (52), Expect = 3.1
Identities = 10/36 (27%), Positives = 15/36 (41%), Gaps = 1/36 (2%)
Query: 78 RVVGRKLQN-QEYKADYTVSINIPNKKGSNMNITIT 112
++G+ N K Y VS+ IP + I I
Sbjct: 18 HLIGKSGANINRIKDQYKVSVRIPPDSEKSNLIRIE 53
>d1lkxa_ c.37.1.9 (A:) Myosin S1, motor domain {Dictyostelium
discoideum, class-I myosin MyoE [TaxId: 44689]}
Length = 684
Score = 24.7 bits (53), Expect = 4.3
Identities = 14/68 (20%), Positives = 26/68 (38%), Gaps = 4/68 (5%)
Query: 2 SIPILSSIPHTKRIHNCDSSYVATVNTSHYATEQSIASARASVMIYDDVNKKWIPSGSSS 61
S P+L + + K + N +SS + S + I + + +K G +
Sbjct: 131 SNPLLEAFGNAKTLRNDNSSRFGKYMEMQFNAVGSPIGGK----ITNYLLEKSRVVGRTQ 186
Query: 62 GLSKVHVF 69
G H+F
Sbjct: 187 GERSFHIF 194
>d1br2a2 c.37.1.9 (A:80-789) Myosin S1, motor domain {Chicken
(Gallus gallus), pectoral muscle [TaxId: 9031]}
Length = 710
Score = 24.3 bits (52), Expect = 6.0
Identities = 12/68 (17%), Positives = 23/68 (33%), Gaps = 4/68 (5%)
Query: 2 SIPILSSIPHTKRIHNCDSSYVATVNTSHYATEQSIASARASVMIYDDVNKKWIPSGSSS 61
+ PIL + + K + N +SS ++ I A + + K +
Sbjct: 148 ANPILEAFGNAKTVKNDNSSRFGKFIRINFDVTGYIVGANIETYLLE----KSRAIRQAK 203
Query: 62 GLSKVHVF 69
H+F
Sbjct: 204 DERTFHIF 211
>d1kafa_ d.199.1.1 (A:) DNA-binding C-terminal domain of the
transcription factor MotA {Bacteriophage T4 [TaxId:
10665]}
Length = 108
Score = 23.4 bits (50), Expect = 6.1
Identities = 7/39 (17%), Positives = 15/39 (38%)
Query: 74 NNTFRVVGRKLQNQEYKADYTVSINIPNKKGSNMNITIT 112
N R+ G K+ + + ++ K N+ + I
Sbjct: 54 NGNMRIFGYKMMEHHIQKFTDIGMSCKIAKNGNVYLDIK 92
>d1w7ja2 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chicken
(Gallus gallus), Va isoform [TaxId: 9031]}
Length = 730
Score = 23.9 bits (51), Expect = 7.7
Identities = 11/68 (16%), Positives = 20/68 (29%)
Query: 2 SIPILSSIPHTKRIHNCDSSYVATVNTSHYATEQSIASARASVMIYDDVNKKWIPSGSSS 61
S PI+ SI + K N +SS + I A + + + +
Sbjct: 137 SNPIMESIGNAKTTRNDNSSRFGKYIEIGFDKRYRIIGANMRTYLLEKSRVVFQAEEERN 196
Query: 62 GLSKVHVF 69
+
Sbjct: 197 YHIFYQLC 204
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.313 0.124 0.351
Gapped
Lambda K H
0.267 0.0521 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 407,256
Number of extensions: 15467
Number of successful extensions: 54
Number of sequences better than 10.0: 1
Number of HSP's gapped: 51
Number of HSP's successfully gapped: 19
Length of query: 120
Length of database: 2,407,596
Length adjustment: 74
Effective length of query: 46
Effective length of database: 1,391,576
Effective search space: 64012496
Effective search space used: 64012496
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 47 (22.4 bits)