BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9201
(264 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1FBV|A Chain A, Structure Of A Cbl-Ubch7 Complex: Ring Domain Function In
Ubiquitin-Protein Ligases
Length = 388
Score = 208 bits (530), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 106/159 (66%), Positives = 120/159 (75%), Gaps = 20/159 (12%)
Query: 84 VTHLDANNFLT--SLQAQLY--------YVFRLSCTRLGQWAIGYVTADGDILQTIPQNK 133
VTH FLT ++A+L Y+FRLSCTRLGQWAIGYVTADG+ILQTIP NK
Sbjct: 217 VTHPGYMAFLTYDEVKARLQKFIHKPGSYIFRLSCTRLGQWAIGYVTADGNILQTIPHNK 276
Query: 134 SLCQALLDGYREGLSGLIYSILRSYLYPDGRNVNPELSWEFISTPEDHIKVTQEQYELYC 193
L QAL+DG+REG YL+PDGRN NP+L+ TP+DHIKVTQEQYELYC
Sbjct: 277 PLFQALIDGFREGF----------YLFPDGRNQNPDLTGLCEPTPQDHIKVTQEQYELYC 326
Query: 194 EMGSTFQLCKICAENDKDIRIEPCGHLLCTPCLTSWQVS 232
EMGSTFQLCKICAENDKD++IEPCGHL+CT CLTSWQ S
Sbjct: 327 EMGSTFQLCKICAENDKDVKIEPCGHLMCTSCLTSWQES 365
>pdb|2Y1M|A Chain A, Structure Of Native C-Cbl
pdb|2Y1M|B Chain B, Structure Of Native C-Cbl
pdb|2Y1M|C Chain C, Structure Of Native C-Cbl
pdb|2Y1M|D Chain D, Structure Of Native C-Cbl
pdb|2Y1M|E Chain E, Structure Of Native C-Cbl
pdb|2Y1M|F Chain F, Structure Of Native C-Cbl
pdb|2Y1N|A Chain A, Structure Of C-Cbl-Zap-70 Peptide Complex
pdb|2Y1N|C Chain C, Structure Of C-Cbl-Zap-70 Peptide Complex
Length = 389
Score = 208 bits (529), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 106/159 (66%), Positives = 120/159 (75%), Gaps = 20/159 (12%)
Query: 84 VTHLDANNFLT--SLQAQLY--------YVFRLSCTRLGQWAIGYVTADGDILQTIPQNK 133
VTH FLT ++A+L Y+FRLSCTRLGQWAIGYVTADG+ILQTIP NK
Sbjct: 217 VTHPGYMAFLTYDEVKARLQKFIHKPGSYIFRLSCTRLGQWAIGYVTADGNILQTIPHNK 276
Query: 134 SLCQALLDGYREGLSGLIYSILRSYLYPDGRNVNPELSWEFISTPEDHIKVTQEQYELYC 193
L QAL+DG+REG YL+PDGRN NP+L+ TP+DHIKVTQEQYELYC
Sbjct: 277 PLFQALIDGFREGF----------YLFPDGRNQNPDLTGLCEPTPQDHIKVTQEQYELYC 326
Query: 194 EMGSTFQLCKICAENDKDIRIEPCGHLLCTPCLTSWQVS 232
EMGSTFQLCKICAENDKD++IEPCGHL+CT CLTSWQ S
Sbjct: 327 EMGSTFQLCKICAENDKDVKIEPCGHLMCTSCLTSWQES 365
>pdb|4A4C|A Chain A, Structure Of Phosphotyr371-C-Cbl-Ubch5b-Zap-70 Complex
Length = 391
Score = 205 bits (522), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 105/159 (66%), Positives = 119/159 (74%), Gaps = 20/159 (12%)
Query: 84 VTHLDANNFLT--SLQAQL--------YYVFRLSCTRLGQWAIGYVTADGDILQTIPQNK 133
VTH FLT ++A+L Y+FRLSCTRLGQWAIGYVTADG+ILQTIP NK
Sbjct: 219 VTHPGYMAFLTYDEVKARLQKFIHKPGSYIFRLSCTRLGQWAIGYVTADGNILQTIPHNK 278
Query: 134 SLCQALLDGYREGLSGLIYSILRSYLYPDGRNVNPELSWEFISTPEDHIKVTQEQYELYC 193
L QAL+DG+REG YL+PDGRN NP+L+ TP+DHIKVTQEQYEL C
Sbjct: 279 PLFQALIDGFREGF----------YLFPDGRNQNPDLTGLCEPTPQDHIKVTQEQYELXC 328
Query: 194 EMGSTFQLCKICAENDKDIRIEPCGHLLCTPCLTSWQVS 232
EMGSTFQLCKICAENDKD++IEPCGHL+CT CLTSWQ S
Sbjct: 329 EMGSTFQLCKICAENDKDVKIEPCGHLMCTSCLTSWQES 367
>pdb|4A4B|A Chain A, Structure Of Modified Phosphotyr371-C-Cbl-Ubch5b-Zap-70
Complex
Length = 391
Score = 204 bits (519), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 104/159 (65%), Positives = 119/159 (74%), Gaps = 20/159 (12%)
Query: 84 VTHLDANNFLT--SLQAQLY--------YVFRLSCTRLGQWAIGYVTADGDILQTIPQNK 133
VTH FLT ++A+L Y+FRLSCTRLGQWAIGYVTADG+ILQTIP NK
Sbjct: 219 VTHPGYMAFLTYDEVKARLQKFIHKPGSYIFRLSCTRLGQWAIGYVTADGNILQTIPHNK 278
Query: 134 SLCQALLDGYREGLSGLIYSILRSYLYPDGRNVNPELSWEFISTPEDHIKVTQEQYELYC 193
L QAL+DG+REG YL+PDGRN NP+L+ TP+DHIKVTQEQ+EL C
Sbjct: 279 PLFQALIDGFREGF----------YLFPDGRNQNPDLTGLCEPTPQDHIKVTQEQFELXC 328
Query: 194 EMGSTFQLCKICAENDKDIRIEPCGHLLCTPCLTSWQVS 232
EMGSTFQLCKICAENDKD++IEPCGHL+CT CLTSWQ S
Sbjct: 329 EMGSTFQLCKICAENDKDVKIEPCGHLMCTSCLTSWQES 367
>pdb|3VGO|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
pdb|3VGO|B Chain B, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
pdb|3VGO|C Chain C, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
Length = 394
Score = 203 bits (517), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 96/132 (72%), Positives = 107/132 (81%), Gaps = 10/132 (7%)
Query: 102 YVFRLSCTRLGQWAIGYVTADGDILQTIPQNKSLCQALLDGYREGLSGLIYSILRSYLYP 161
Y+FRLSCTRLGQWAIGYVT DG+ILQTIP NK L QAL+DG REG YLYP
Sbjct: 251 YIFRLSCTRLGQWAIGYVTGDGNILQTIPHNKPLFQALIDGSREGF----------YLYP 300
Query: 162 DGRNVNPELSWEFISTPEDHIKVTQEQYELYCEMGSTFQLCKICAENDKDIRIEPCGHLL 221
DGR+ NP+L+ TP DHIKVTQEQYELYCEMGSTFQLCKICAENDKD++IEPCGHL+
Sbjct: 301 DGRSYNPDLTGLCEPTPHDHIKVTQEQYELYCEMGSTFQLCKICAENDKDVKIEPCGHLM 360
Query: 222 CTPCLTSWQVSN 233
CT CLT+WQ S+
Sbjct: 361 CTSCLTAWQESD 372
>pdb|4A49|A Chain A, Structure Of Phosphotyr371-C-Cbl-Ubch5b Complex
Length = 84
Score = 113 bits (283), Expect = 9e-26, Method: Composition-based stats.
Identities = 48/56 (85%), Positives = 53/56 (94%)
Query: 177 TPEDHIKVTQEQYELYCEMGSTFQLCKICAENDKDIRIEPCGHLLCTPCLTSWQVS 232
TP+DHIKVTQEQ+EL CEMGSTFQLCKICAENDKD++IEPCGHL+CT CLTSWQ S
Sbjct: 5 TPQDHIKVTQEQFELXCEMGSTFQLCKICAENDKDVKIEPCGHLMCTSCLTSWQES 60
>pdb|2LDR|A Chain A, Solution Structure Of Helix-Ring Domain Of Cbl-B In The
Tyr363 Phosphorylated Form
Length = 82
Score = 109 bits (273), Expect = 1e-24, Method: Composition-based stats.
Identities = 46/54 (85%), Positives = 51/54 (94%)
Query: 180 DHIKVTQEQYELYCEMGSTFQLCKICAENDKDIRIEPCGHLLCTPCLTSWQVSN 233
DHIKVTQEQYEL CEMGSTFQLCKICAENDKD++IEPCGHL+CT CLT+WQ S+
Sbjct: 7 DHIKVTQEQYELXCEMGSTFQLCKICAENDKDVKIEPCGHLMCTSCLTAWQESD 60
>pdb|2K4D|A Chain A, E2-C-Cbl Recognition Is Necessary But Not Sufficient For
Ubiquitination Activity
Length = 83
Score = 108 bits (269), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 49/61 (80%), Positives = 53/61 (86%)
Query: 179 EDHIKVTQEQYELYCEMGSTFQLCKICAENDKDIRIEPCGHLLCTPCLTSWQVSNRSRIL 238
+DHIKVTQEQYELYCEMGSTFQLCKICAENDKD++IEPCGHL+CT CLTSWQ S
Sbjct: 4 QDHIKVTQEQYELYCEMGSTFQLCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCP 63
Query: 239 F 239
F
Sbjct: 64 F 64
>pdb|1YVH|A Chain A, Crystal Structure Of The C-Cbl Tkb Domain In Complex With
The Aps Ptyr-618 Phosphopeptide
pdb|3BUM|B Chain B, Crystal Structure Of C-Cbl-Tkb Domain Complexed With Its
Binding Motif In Sprouty2
pdb|3BUN|B Chain B, Crystal Structure Of C-Cbl-Tkb Domain Complexed With Its
Binding Motif In Sprouty4
pdb|3BUO|B Chain B, Crystal Structure Of C-Cbl-Tkb Domain Complexed With Its
Binding Motif In Egf Receptor'
pdb|3BUO|D Chain D, Crystal Structure Of C-Cbl-Tkb Domain Complexed With Its
Binding Motif In Egf Receptor'
pdb|3BUW|B Chain B, Crystal Structure Of C-Cbl-Tkb Domain Complexed With Its
Binding Motif In Syk
pdb|3BUW|D Chain D, Crystal Structure Of C-Cbl-Tkb Domain Complexed With Its
Binding Motif In Syk
pdb|3BUX|B Chain B, Crystal Structure Of C-Cbl-Tkb Domain Complexed With Its
Binding Motif In C-Met
pdb|3BUX|D Chain D, Crystal Structure Of C-Cbl-Tkb Domain Complexed With Its
Binding Motif In C-Met
pdb|3OB1|B Chain B, Crystal Structure Of C-Cbl Tkb Domain In Complex With
Double Phosphorylated Spry2 Peptide
pdb|3OB2|B Chain B, Crystal Structure Of C-Cbl Tkb Domain In Complex With
Double Phosphorylated Egfr Peptide
pdb|3PLF|B Chain B, Reverse Binding Mode Of Metrd Peptide Complexed With C-Cbl
Tkb Domain
pdb|3PLF|D Chain D, Reverse Binding Mode Of Metrd Peptide Complexed With C-Cbl
Tkb Domain
Length = 329
Score = 102 bits (255), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 48/70 (68%), Positives = 55/70 (78%), Gaps = 10/70 (14%)
Query: 102 YVFRLSCTRLGQWAIGYVTADGDILQTIPQNKSLCQALLDGYREGLSGLIYSILRSYLYP 161
Y+FRLSCTRLGQWAIGYVTADG+ILQTIP NK L QAL+DG+REG YL+P
Sbjct: 269 YIFRLSCTRLGQWAIGYVTADGNILQTIPHNKPLFQALIDGFREGF----------YLFP 318
Query: 162 DGRNVNPELS 171
DGRN NP+L+
Sbjct: 319 DGRNQNPDLT 328
>pdb|1B47|A Chain A, Structure Of The N-Terminal Domain Of Cbl In Complex With
Its Binding Site In Zap-70
pdb|1B47|B Chain B, Structure Of The N-Terminal Domain Of Cbl In Complex With
Its Binding Site In Zap-70
pdb|1B47|C Chain C, Structure Of The N-Terminal Domain Of Cbl In Complex With
Its Binding Site In Zap-70
Length = 304
Score = 102 bits (255), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 48/70 (68%), Positives = 55/70 (78%), Gaps = 10/70 (14%)
Query: 102 YVFRLSCTRLGQWAIGYVTADGDILQTIPQNKSLCQALLDGYREGLSGLIYSILRSYLYP 161
Y+FRLSCTRLGQWAIGYVTADG+ILQTIP NK L QAL+DG+REG YL+P
Sbjct: 245 YIFRLSCTRLGQWAIGYVTADGNILQTIPHNKPLFQALIDGFREGF----------YLFP 294
Query: 162 DGRNVNPELS 171
DGRN NP+L+
Sbjct: 295 DGRNQNPDLT 304
>pdb|2CBL|A Chain A, N-Terminal Domain Of Cbl In Complex With Its Binding Site
On Zap-70
Length = 305
Score = 102 bits (255), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 48/70 (68%), Positives = 55/70 (78%), Gaps = 10/70 (14%)
Query: 102 YVFRLSCTRLGQWAIGYVTADGDILQTIPQNKSLCQALLDGYREGLSGLIYSILRSYLYP 161
Y+FRLSCTRLGQWAIGYVTADG+ILQTIP NK L QAL+DG+REG YL+P
Sbjct: 245 YIFRLSCTRLGQWAIGYVTADGNILQTIPHNKPLFQALIDGFREGF----------YLFP 294
Query: 162 DGRNVNPELS 171
DGRN NP+L+
Sbjct: 295 DGRNQNPDLT 304
>pdb|3PFV|A Chain A, Crystal Structure Of Cbl-B Tkb Domain In Complex With Egfr
Py1069 Peptide
pdb|3PFV|B Chain B, Crystal Structure Of Cbl-B Tkb Domain In Complex With Egfr
Py1069 Peptide
Length = 315
Score = 99.0 bits (245), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 47/70 (67%), Positives = 53/70 (75%), Gaps = 10/70 (14%)
Query: 102 YVFRLSCTRLGQWAIGYVTADGDILQTIPQNKSLCQALLDGYREGLSGLIYSILRSYLYP 161
Y+FRLSCTRLGQWAIGYVT DG+ILQTIP NK L QAL+DG REG YLYP
Sbjct: 247 YIFRLSCTRLGQWAIGYVTGDGNILQTIPHNKPLFQALIDGSREGF----------YLYP 296
Query: 162 DGRNVNPELS 171
DGR+ NP+L+
Sbjct: 297 DGRSYNPDLT 306
>pdb|3OP0|A Chain A, Crystal Structure Of Cbl-C (Cbl-3) Tkb Domain In Complex
With Egfr Py1069 Peptide
pdb|3OP0|B Chain B, Crystal Structure Of Cbl-C (Cbl-3) Tkb Domain In Complex
With Egfr Py1069 Peptide
Length = 323
Score = 87.0 bits (214), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 41/70 (58%), Positives = 50/70 (71%), Gaps = 10/70 (14%)
Query: 102 YVFRLSCTRLGQWAIGYVTADGDILQTIPQNKSLCQALLDGYREGLSGLIYSILRSYLYP 161
Y+FR SCTRLGQWAIGYV++DG ILQTIP NK L Q LL+G ++G YLYP
Sbjct: 254 YIFRPSCTRLGQWAIGYVSSDGSILQTIPANKPLSQVLLEGQKDGF----------YLYP 303
Query: 162 DGRNVNPELS 171
DG+ NP+L+
Sbjct: 304 DGKTHNPDLT 313
>pdb|4AUQ|B Chain B, Structure Of Birc7-Ubch5b-Ub Complex.
pdb|4AUQ|E Chain E, Structure Of Birc7-Ubch5b-Ub Complex
Length = 62
Score = 33.5 bits (75), Expect = 0.12, Method: Composition-based stats.
Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 6/46 (13%)
Query: 202 CKICAENDKDIRIEPCGHLLCTPCLTSWQVSN------RSRILFYL 241
CK+C + I PCGHL+C C Q+ RSR+ +L
Sbjct: 16 CKVCLDRAVSIVFVPCGHLVCAECAPGLQLCPICRAPVRSRVRTFL 61
>pdb|2ECJ|A Chain A, Solution Structure Of The Ring Domain Of The Human
Tripartite Motif-Containing Protein 39
Length = 58
Score = 31.6 bits (70), Expect = 0.42, Method: Composition-based stats.
Identities = 12/28 (42%), Positives = 15/28 (53%)
Query: 202 CKICAENDKDIRIEPCGHLLCTPCLTSW 229
C +C E K+ I CGH C C+T W
Sbjct: 18 CSVCLEYLKEPVIIECGHNFCKACITRW 45
>pdb|2ECN|A Chain A, Solution Structure Of The Ring Domain Of The Human Ring
Finger Protein 141
Length = 70
Score = 31.2 bits (69), Expect = 0.55, Method: Composition-based stats.
Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 3/35 (8%)
Query: 202 CKICAENDKDIRIEPCGHLLCTPCLTSWQVSNRSR 236
C IC + D+ I PC H C C+ W S+R R
Sbjct: 18 CCICMDGRADL-ILPCAHSFCQKCIDKW--SDRHR 49
>pdb|4IC3|A Chain A, Crystal Structure Of The F495l Mutant Xiap Ring Domain
pdb|4IC3|B Chain B, Crystal Structure Of The F495l Mutant Xiap Ring Domain
Length = 74
Score = 30.8 bits (68), Expect = 0.77, Method: Composition-based stats.
Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Query: 200 QLCKICAENDKDIRIEPCGHLL-CTPC 225
+LCKIC + + I PCGHL+ C C
Sbjct: 25 KLCKICMDRNIAIVFVPCGHLVTCKQC 51
>pdb|4IC2|A Chain A, Crystal Structure Of The Xiap Ring Domain
pdb|4IC2|B Chain B, Crystal Structure Of The Xiap Ring Domain
Length = 74
Score = 30.8 bits (68), Expect = 0.77, Method: Composition-based stats.
Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Query: 200 QLCKICAENDKDIRIEPCGHLL-CTPC 225
+LCKIC + + I PCGHL+ C C
Sbjct: 25 KLCKICMDRNIAIVFVPCGHLVTCKQC 51
>pdb|2ECG|A Chain A, Solution Structure Of The Ring Domain Of The Baculoviral
Iap Repeat-Containing Protein 4 From Homo Sapiens
Length = 75
Score = 30.8 bits (68), Expect = 0.81, Method: Composition-based stats.
Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Query: 200 QLCKICAENDKDIRIEPCGHLL-CTPC 225
+LCKIC + + I PCGHL+ C C
Sbjct: 26 KLCKICMDRNIAIVFVPCGHLVTCKQC 52
>pdb|1CHC|A Chain A, Structure Of The C3hc4 Domain By 1h-Nuclear Magnetic
Resonance Spectroscopy; A New Structural Class Of Zinc-
Finger
Length = 68
Score = 29.6 bits (65), Expect = 1.6, Method: Composition-based stats.
Identities = 13/40 (32%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
Query: 195 MGSTFQLCKICAENDKDIRIE-PCGHLLCTPCLTSWQVSN 233
M + + C IC E+ + + PC H C C+T W N
Sbjct: 1 MATVAERCPICLEDPSNYSMALPCLHAFCYVCITRWIRQN 40
>pdb|3EB5|A Chain A, Structure Of The Ciap2 Ring Domain
pdb|3EB6|A Chain A, Structure Of The Ciap2 Ring Domain Bound To Ubch5b
Length = 74
Score = 29.6 bits (65), Expect = 1.7, Method: Composition-based stats.
Identities = 12/28 (42%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Query: 202 CKICAENDKDIRIEPCGHL-LCTPCLTS 228
CK+C + + I PCGHL +C C S
Sbjct: 27 CKVCMDKEVSIVFIPCGHLVVCKDCAPS 54
>pdb|2BZN|A Chain A, Crystal Structure Of Human Guanosine Monophosphate
Reductase 2 Gmpr2 In Complex With Imp
pdb|2BZN|B Chain B, Crystal Structure Of Human Guanosine Monophosphate
Reductase 2 Gmpr2 In Complex With Imp
pdb|2BZN|C Chain C, Crystal Structure Of Human Guanosine Monophosphate
Reductase 2 Gmpr2 In Complex With Imp
pdb|2BZN|D Chain D, Crystal Structure Of Human Guanosine Monophosphate
Reductase 2 Gmpr2 In Complex With Imp
pdb|2BZN|E Chain E, Crystal Structure Of Human Guanosine Monophosphate
Reductase 2 Gmpr2 In Complex With Imp
pdb|2BZN|F Chain F, Crystal Structure Of Human Guanosine Monophosphate
Reductase 2 Gmpr2 In Complex With Imp
pdb|2BZN|G Chain G, Crystal Structure Of Human Guanosine Monophosphate
Reductase 2 Gmpr2 In Complex With Imp
pdb|2BZN|H Chain H, Crystal Structure Of Human Guanosine Monophosphate
Reductase 2 Gmpr2 In Complex With Imp
pdb|2C6Q|A Chain A, Crystal Structure Of Human Guanosine Monophosphate
Reductase 2 Gmpr2 In Complex With Imp And Nadph
pdb|2C6Q|B Chain B, Crystal Structure Of Human Guanosine Monophosphate
Reductase 2 Gmpr2 In Complex With Imp And Nadph
pdb|2C6Q|C Chain C, Crystal Structure Of Human Guanosine Monophosphate
Reductase 2 Gmpr2 In Complex With Imp And Nadph
pdb|2C6Q|D Chain D, Crystal Structure Of Human Guanosine Monophosphate
Reductase 2 Gmpr2 In Complex With Imp And Nadph
pdb|2C6Q|E Chain E, Crystal Structure Of Human Guanosine Monophosphate
Reductase 2 Gmpr2 In Complex With Imp And Nadph
pdb|2C6Q|F Chain F, Crystal Structure Of Human Guanosine Monophosphate
Reductase 2 Gmpr2 In Complex With Imp And Nadph
pdb|2C6Q|G Chain G, Crystal Structure Of Human Guanosine Monophosphate
Reductase 2 Gmpr2 In Complex With Imp And Nadph
pdb|2C6Q|H Chain H, Crystal Structure Of Human Guanosine Monophosphate
Reductase 2 Gmpr2 In Complex With Imp And Nadph
Length = 351
Score = 29.6 bits (65), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
Query: 125 ILQTIPQNKSLCQALLDGYREGLSGLIYSILRSY---LYPDGRNVNPELSWEFISTPEDH 181
IL+ IPQ K +C + +GY E + + + + G V E+ E I + D
Sbjct: 126 ILEAIPQVKYICLDVANGYSEHFVEFVKDVRKRFPQHTIMAGNVVTGEMVEELILSGADI 185
Query: 182 IKV 184
IKV
Sbjct: 186 IKV 188
>pdb|2A7R|A Chain A, Crystal Structure Of Human Guanosine Monophosphate
Reductase 2 (Gmpr2)
pdb|2A7R|B Chain B, Crystal Structure Of Human Guanosine Monophosphate
Reductase 2 (Gmpr2)
pdb|2A7R|C Chain C, Crystal Structure Of Human Guanosine Monophosphate
Reductase 2 (Gmpr2)
pdb|2A7R|D Chain D, Crystal Structure Of Human Guanosine Monophosphate
Reductase 2 (Gmpr2)
Length = 366
Score = 29.6 bits (65), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
Query: 125 ILQTIPQNKSLCQALLDGYREGLSGLIYSILRSY---LYPDGRNVNPELSWEFISTPEDH 181
IL+ IPQ K +C + +GY E + + + + G V E+ E I + D
Sbjct: 134 ILEAIPQVKYICLDVANGYSEHFVEFVKDVRKRFPQHTIMAGNVVTGEMVEELILSGADI 193
Query: 182 IKV 184
IKV
Sbjct: 194 IKV 196
>pdb|1X4J|A Chain A, Solution Structure Of Ring Finger In Ring Finger Protein
38
Length = 75
Score = 28.9 bits (63), Expect = 3.1, Method: Composition-based stats.
Identities = 12/38 (31%), Positives = 20/38 (52%), Gaps = 3/38 (7%)
Query: 201 LCKICA---ENDKDIRIEPCGHLLCTPCLTSWQVSNRS 235
LC +C E+ + +R+ PC H C+ W +NR+
Sbjct: 25 LCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANRT 62
>pdb|3T6P|A Chain A, Iap Antagonist-Induced Conformational Change In Ciap1
Promotes E3 Ligase Activation Via Dimerization
Length = 345
Score = 27.7 bits (60), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Query: 202 CKICAENDKDIRIEPCGHL-LCTPCLTS 228
CK+C + + + PCGHL +C C S
Sbjct: 298 CKVCMDKEVSVVFIPCGHLVVCQECAPS 325
>pdb|2EP4|A Chain A, Solution Structure Of Ring Finger From Human Ring Finger
Protein 24
Length = 74
Score = 27.3 bits (59), Expect = 8.9, Method: Composition-based stats.
Identities = 12/33 (36%), Positives = 17/33 (51%), Gaps = 3/33 (9%)
Query: 200 QLCKICAENDK---DIRIEPCGHLLCTPCLTSW 229
+LC +C E+ K ++ I PC H CL W
Sbjct: 16 ELCAVCLEDFKPRDELGICPCKHAFHRKCLIKW 48
>pdb|2EGP|A Chain A, Solution Structure Of The Ring-Finger Domain From Human
Tripartite Motif Protein 34
Length = 79
Score = 27.3 bits (59), Expect = 9.5, Method: Composition-based stats.
Identities = 16/40 (40%), Positives = 20/40 (50%), Gaps = 11/40 (27%)
Query: 202 CKICAENDKDIRIEP----CGHLLCTPCLTSWQVSNRSRI 237
C IC E + EP CGH LC C+T VSN+ +
Sbjct: 15 CPICLE----LLTEPLSLDCGHSLCRACIT---VSNKEAV 47
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.141 0.454
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,599,569
Number of Sequences: 62578
Number of extensions: 307598
Number of successful extensions: 972
Number of sequences better than 100.0: 39
Number of HSP's better than 100.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 939
Number of HSP's gapped (non-prelim): 39
length of query: 264
length of database: 14,973,337
effective HSP length: 97
effective length of query: 167
effective length of database: 8,903,271
effective search space: 1486846257
effective search space used: 1486846257
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 50 (23.9 bits)