BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9201
(264 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P22682|CBL_MOUSE E3 ubiquitin-protein ligase CBL OS=Mus musculus GN=Cbl PE=1 SV=3
Length = 913
Score = 213 bits (543), Expect = 9e-55, Method: Compositional matrix adjust.
Identities = 106/159 (66%), Positives = 120/159 (75%), Gaps = 20/159 (12%)
Query: 84 VTHLDANNFLT--SLQAQLY--------YVFRLSCTRLGQWAIGYVTADGDILQTIPQNK 133
VTH FLT ++A+L Y+FRLSCTRLGQWAIGYVTADG+ILQTIP NK
Sbjct: 261 VTHPGYMAFLTYDEVKARLQKFIHKPGSYIFRLSCTRLGQWAIGYVTADGNILQTIPHNK 320
Query: 134 SLCQALLDGYREGLSGLIYSILRSYLYPDGRNVNPELSWEFISTPEDHIKVTQEQYELYC 193
L QAL+DG+REG YL+PDGRN NP+L+ TP+DHIKVTQEQYELYC
Sbjct: 321 PLFQALIDGFREGF----------YLFPDGRNQNPDLTGLCEPTPQDHIKVTQEQYELYC 370
Query: 194 EMGSTFQLCKICAENDKDIRIEPCGHLLCTPCLTSWQVS 232
EMGSTFQLCKICAENDKD++IEPCGHL+CT CLTSWQ S
Sbjct: 371 EMGSTFQLCKICAENDKDVKIEPCGHLMCTSCLTSWQES 409
>sp|P22681|CBL_HUMAN E3 ubiquitin-protein ligase CBL OS=Homo sapiens GN=CBL PE=1 SV=2
Length = 906
Score = 213 bits (541), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 106/159 (66%), Positives = 120/159 (75%), Gaps = 20/159 (12%)
Query: 84 VTHLDANNFLT--SLQAQLY--------YVFRLSCTRLGQWAIGYVTADGDILQTIPQNK 133
VTH FLT ++A+L Y+FRLSCTRLGQWAIGYVTADG+ILQTIP NK
Sbjct: 263 VTHPGYMAFLTYDEVKARLQKFIHKPGSYIFRLSCTRLGQWAIGYVTADGNILQTIPHNK 322
Query: 134 SLCQALLDGYREGLSGLIYSILRSYLYPDGRNVNPELSWEFISTPEDHIKVTQEQYELYC 193
L QAL+DG+REG YL+PDGRN NP+L+ TP+DHIKVTQEQYELYC
Sbjct: 323 PLFQALIDGFREGF----------YLFPDGRNQNPDLTGLCEPTPQDHIKVTQEQYELYC 372
Query: 194 EMGSTFQLCKICAENDKDIRIEPCGHLLCTPCLTSWQVS 232
EMGSTFQLCKICAENDKD++IEPCGHL+CT CLTSWQ S
Sbjct: 373 EMGSTFQLCKICAENDKDVKIEPCGHLMCTSCLTSWQES 411
>sp|Q6GQL0|CBLBA_XENLA E3 ubiquitin-protein ligase CBL-B-A OS=Xenopus laevis GN=cblb-a
PE=2 SV=1
Length = 918
Score = 209 bits (532), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 106/160 (66%), Positives = 119/160 (74%), Gaps = 20/160 (12%)
Query: 84 VTHLDANNFLT--SLQAQLY--------YVFRLSCTRLGQWAIGYVTADGDILQTIPQNK 133
VTH FLT ++A+L Y+FRLSCTRLGQWAIGYVTADG+ILQTIP NK
Sbjct: 266 VTHPGYMAFLTYDEVKARLQKYSLKPGSYIFRLSCTRLGQWAIGYVTADGNILQTIPHNK 325
Query: 134 SLCQALLDGYREGLSGLIYSILRSYLYPDGRNVNPELSWEFISTPEDHIKVTQEQYELYC 193
L QAL+DG REG YLYPDGR+ NP+L+ TP DHIKVTQEQYELYC
Sbjct: 326 PLFQALIDGSREGF----------YLYPDGRSYNPDLTGLCEPTPHDHIKVTQEQYELYC 375
Query: 194 EMGSTFQLCKICAENDKDIRIEPCGHLLCTPCLTSWQVSN 233
EMGSTFQLCKICAENDKD++IEPCGHL+CT CLTSWQ S+
Sbjct: 376 EMGSTFQLCKICAENDKDVKIEPCGHLMCTSCLTSWQESD 415
>sp|Q6DFR2|CBLB_XENTR E3 ubiquitin-protein ligase CBL-B OS=Xenopus tropicalis GN=cblb
PE=2 SV=1
Length = 982
Score = 208 bits (530), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 98/132 (74%), Positives = 108/132 (81%), Gaps = 10/132 (7%)
Query: 102 YVFRLSCTRLGQWAIGYVTADGDILQTIPQNKSLCQALLDGYREGLSGLIYSILRSYLYP 161
Y+FRLSCTRLGQWAIGYVTADG+ILQTIP NK L QAL+DG REG YLYP
Sbjct: 294 YIFRLSCTRLGQWAIGYVTADGNILQTIPHNKPLFQALIDGSREGF----------YLYP 343
Query: 162 DGRNVNPELSWEFISTPEDHIKVTQEQYELYCEMGSTFQLCKICAENDKDIRIEPCGHLL 221
DGR+ NP+L+ TP DHIKVTQEQYELYCEMGSTFQLCKICAENDKD++IEPCGHL+
Sbjct: 344 DGRSYNPDLTDLCEPTPHDHIKVTQEQYELYCEMGSTFQLCKICAENDKDVKIEPCGHLM 403
Query: 222 CTPCLTSWQVSN 233
CT CLTSWQ S+
Sbjct: 404 CTSCLTSWQESD 415
>sp|Q3TTA7|CBLB_MOUSE E3 ubiquitin-protein ligase CBL-B OS=Mus musculus GN=Cblb PE=1 SV=3
Length = 982
Score = 206 bits (525), Expect = 9e-53, Method: Compositional matrix adjust.
Identities = 96/132 (72%), Positives = 107/132 (81%), Gaps = 10/132 (7%)
Query: 102 YVFRLSCTRLGQWAIGYVTADGDILQTIPQNKSLCQALLDGYREGLSGLIYSILRSYLYP 161
Y+FRLSCTRLGQWAIGYVT DG+ILQTIP NK L QAL+DG REG YLYP
Sbjct: 283 YIFRLSCTRLGQWAIGYVTGDGNILQTIPHNKPLFQALIDGSREGF----------YLYP 332
Query: 162 DGRNVNPELSWEFISTPEDHIKVTQEQYELYCEMGSTFQLCKICAENDKDIRIEPCGHLL 221
DGR+ NP+L+ TP DHIKVTQEQYELYCEMGSTFQLCKICAENDKD++IEPCGHL+
Sbjct: 333 DGRSYNPDLTGLCEPTPHDHIKVTQEQYELYCEMGSTFQLCKICAENDKDVKIEPCGHLM 392
Query: 222 CTPCLTSWQVSN 233
CT CLT+WQ S+
Sbjct: 393 CTSCLTAWQESD 404
>sp|Q8K4S7|CBLB_RAT E3 ubiquitin-protein ligase CBL-B OS=Rattus norvegicus GN=Cblb PE=2
SV=1
Length = 938
Score = 206 bits (525), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 104/160 (65%), Positives = 118/160 (73%), Gaps = 20/160 (12%)
Query: 84 VTHLDANNFLT--SLQAQLY--------YVFRLSCTRLGQWAIGYVTADGDILQTIPQNK 133
VTH FLT ++A+L Y+FRLSCTRLGQWAIGYVT DG+ILQTIP NK
Sbjct: 255 VTHPGYMAFLTYDEVKARLQKYSTKPGSYIFRLSCTRLGQWAIGYVTGDGNILQTIPHNK 314
Query: 134 SLCQALLDGYREGLSGLIYSILRSYLYPDGRNVNPELSWEFISTPEDHIKVTQEQYELYC 193
L QAL+DG REG YLYPDGR+ NP+L+ TP DHIKVTQEQYELYC
Sbjct: 315 PLFQALIDGSREGF----------YLYPDGRSYNPDLTGLCEPTPHDHIKVTQEQYELYC 364
Query: 194 EMGSTFQLCKICAENDKDIRIEPCGHLLCTPCLTSWQVSN 233
EMGSTFQLCKICAENDKD++IEPCGHL+CT CLT+WQ S+
Sbjct: 365 EMGSTFQLCKICAENDKDVKIEPCGHLMCTSCLTAWQESD 404
>sp|Q13191|CBLB_HUMAN E3 ubiquitin-protein ligase CBL-B OS=Homo sapiens GN=CBLB PE=1 SV=2
Length = 982
Score = 206 bits (525), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 96/132 (72%), Positives = 107/132 (81%), Gaps = 10/132 (7%)
Query: 102 YVFRLSCTRLGQWAIGYVTADGDILQTIPQNKSLCQALLDGYREGLSGLIYSILRSYLYP 161
Y+FRLSCTRLGQWAIGYVT DG+ILQTIP NK L QAL+DG REG YLYP
Sbjct: 283 YIFRLSCTRLGQWAIGYVTGDGNILQTIPHNKPLFQALIDGSREGF----------YLYP 332
Query: 162 DGRNVNPELSWEFISTPEDHIKVTQEQYELYCEMGSTFQLCKICAENDKDIRIEPCGHLL 221
DGR+ NP+L+ TP DHIKVTQEQYELYCEMGSTFQLCKICAENDKD++IEPCGHL+
Sbjct: 333 DGRSYNPDLTGLCEPTPHDHIKVTQEQYELYCEMGSTFQLCKICAENDKDVKIEPCGHLM 392
Query: 222 CTPCLTSWQVSN 233
CT CLT+WQ S+
Sbjct: 393 CTSCLTAWQESD 404
>sp|Q6NRE7|CBLBB_XENLA E3 ubiquitin-protein ligase CBL-B-B OS=Xenopus laevis GN=cblb-b
PE=2 SV=1
Length = 764
Score = 204 bits (519), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 97/132 (73%), Positives = 107/132 (81%), Gaps = 10/132 (7%)
Query: 102 YVFRLSCTRLGQWAIGYVTADGDILQTIPQNKSLCQALLDGYREGLSGLIYSILRSYLYP 161
Y+FRLSCTRLGQWAIGYVTA G+ILQTIP NK L QAL+DG REG YLYP
Sbjct: 296 YIFRLSCTRLGQWAIGYVTAGGNILQTIPHNKPLFQALIDGSREGF----------YLYP 345
Query: 162 DGRNVNPELSWEFISTPEDHIKVTQEQYELYCEMGSTFQLCKICAENDKDIRIEPCGHLL 221
DGR+ NP+L+ TP DHIKVTQEQYELYCEMGSTFQLCKICAENDKD++IEPCGHL+
Sbjct: 346 DGRSYNPDLTDLCEPTPHDHIKVTQEQYELYCEMGSTFQLCKICAENDKDVKIEPCGHLM 405
Query: 222 CTPCLTSWQVSN 233
CT CLTSWQ S+
Sbjct: 406 CTSCLTSWQESD 417
>sp|Q9ULV8|CBLC_HUMAN Signal transduction protein CBL-C OS=Homo sapiens GN=CBLC PE=1 SV=3
Length = 474
Score = 160 bits (406), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 76/138 (55%), Positives = 98/138 (71%), Gaps = 10/138 (7%)
Query: 102 YVFRLSCTRLGQWAIGYVTADGDILQTIPQNKSLCQALLDGYREGLSGLIYSILRSYLYP 161
Y+FR SCTRLGQWAIGYV++DG ILQTIP NK L Q LL+G ++G YLYP
Sbjct: 261 YIFRPSCTRLGQWAIGYVSSDGSILQTIPANKPLSQVLLEGQKDGF----------YLYP 310
Query: 162 DGRNVNPELSWEFISTPEDHIKVTQEQYELYCEMGSTFQLCKICAENDKDIRIEPCGHLL 221
DG+ NP+L+ + P+ I V++EQ +LY M STF+LCKICAE++KD++IEPCGHLL
Sbjct: 311 DGKTHNPDLTELGQAEPQQRIHVSEEQLQLYWAMDSTFELCKICAESNKDVKIEPCGHLL 370
Query: 222 CTPCLTSWQVSNRSRILF 239
C+ CL +WQ S+ F
Sbjct: 371 CSCCLAAWQHSDSQTCPF 388
>sp|Q80XL1|CBLC_MOUSE Signal transduction protein CBL-C OS=Mus musculus GN=Cblc PE=2 SV=2
Length = 496
Score = 156 bits (395), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 76/132 (57%), Positives = 94/132 (71%), Gaps = 10/132 (7%)
Query: 102 YVFRLSCTRLGQWAIGYVTADGDILQTIPQNKSLCQALLDGYREGLSGLIYSILRSYLYP 161
Y+FR SCTRLGQWAIGYV++DG ILQTIP NK L Q LL G ++G+ +L+P
Sbjct: 260 YIFRPSCTRLGQWAIGYVSSDGSILQTIPLNKPLLQVLLKGQKDGI----------FLFP 309
Query: 162 DGRNVNPELSWEFISTPEDHIKVTQEQYELYCEMGSTFQLCKICAENDKDIRIEPCGHLL 221
DG+ NP+L+ P I+V++EQ LY M STFQLCKICAE DKD+RIEPCGHLL
Sbjct: 310 DGKKHNPDLTELCRVEPYQRIQVSEEQLLLYQAMNSTFQLCKICAERDKDVRIEPCGHLL 369
Query: 222 CTPCLTSWQVSN 233
C+ CL +WQ S+
Sbjct: 370 CSCCLAAWQDSD 381
>sp|P23092|CBL_MLVCN Transforming protein cbl OS=Cas-NS-1 murine leukemia virus GN=V-CBL
PE=3 SV=1
Length = 390
Score = 102 bits (255), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 56/98 (57%), Positives = 66/98 (67%), Gaps = 20/98 (20%)
Query: 84 VTHLDANNFLT--SLQAQLY--------YVFRLSCTRLGQWAIGYVTADGDILQTIPQNK 133
VTH FLT ++A+L Y+FRLSCTRLGQWAIGYVTADG+ILQTIP NK
Sbjct: 293 VTHPGYMAFLTYDEVKARLQKFIHKPGSYIFRLSCTRLGQWAIGYVTADGNILQTIPHNK 352
Query: 134 SLCQALLDGYREGLSGLIYSILRSYLYPDGRNVNPELS 171
L QAL+DG+REG YL+PDGRN NP+L+
Sbjct: 353 PLFQALIDGFREGF----------YLFPDGRNQNPDLT 380
>sp|Q4I7N9|BRE1_GIBZE E3 ubiquitin-protein ligase BRE1 OS=Gibberella zeae (strain PH-1 /
ATCC MYA-4620 / FGSC 9075 / NRRL 31084) GN=BRE1 PE=3
SV=1
Length = 703
Score = 47.4 bits (111), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/169 (24%), Positives = 77/169 (45%), Gaps = 20/169 (11%)
Query: 78 GKMVTLVTHLDANN--FLTSLQAQLYYVFRLSCTRLGQWAIGYVTADGDILQTIPQNKSL 135
+++ + L++ N L +L+ QL + + + + + + VT+ L + + +SL
Sbjct: 526 SEIIAQLKDLESQNRVLLGNLEKQLTDLKQSNASLMTENKKMEVTS----LDAVRRTESL 581
Query: 136 CQALLDGYREGLSGLIYSILRSYLYPDGRNVNPELSWEFISTPEDHIKVTQEQYELYC-- 193
+ + D LS L+ S + RNV E E + +H + ++ ++
Sbjct: 582 NKQVSD-----LSNLVKSKDAASAVVRERNVMQETEVEKMKVRLEHAQKDRDNWKNKALS 636
Query: 194 ------EMGSTFQLCKICAENDKDIRIEPCGHLLCTPCLTSWQVSNRSR 236
EM TF LC IC N K+ ++ CGHL C C+ ++SNR R
Sbjct: 637 NSSEEEEMLRTFALCTICRNNFKNTALKTCGHLFCNQCVDD-RISNRMR 684
>sp|Q6PC78|RN185_DANRE E3 ubiquitin-protein ligase RNF185 OS=Danio rerio GN=rnf185 PE=2
SV=1
Length = 194
Score = 39.7 bits (91), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Query: 197 STFQLCKICAENDKDIRIEPCGHLLCTPCLTSWQVSNRSR 236
STF+ C IC + KD I CGHL C PCL W + +R
Sbjct: 37 STFE-CNICLDTSKDAVISLCGHLFCWPCLHQWLETRPNR 75
>sp|Q5RFK9|RN185_PONAB E3 ubiquitin-protein ligase RNF185 OS=Pongo abelii GN=RNF185 PE=2
SV=1
Length = 192
Score = 39.3 bits (90), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Query: 197 STFQLCKICAENDKDIRIEPCGHLLCTPCLTSWQVSNRSR 236
STF+ C IC + KD I CGHL C PCL W + +R
Sbjct: 35 STFE-CNICLDTAKDAVISLCGHLFCWPCLHQWLETRPNR 73
>sp|Q96GF1|RN185_HUMAN E3 ubiquitin-protein ligase RNF185 OS=Homo sapiens GN=RNF185 PE=1
SV=1
Length = 192
Score = 38.9 bits (89), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Query: 197 STFQLCKICAENDKDIRIEPCGHLLCTPCLTSWQVSNRSR 236
STF+ C IC + KD I CGHL C PCL W + +R
Sbjct: 35 STFE-CNICLDTAKDAVISLCGHLFCWPCLHQWLETRPNR 73
>sp|Q568Y3|RN185_RAT E3 ubiquitin-protein ligase RNF185 OS=Rattus norvegicus GN=Rnf185
PE=2 SV=1
Length = 192
Score = 38.9 bits (89), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Query: 197 STFQLCKICAENDKDIRIEPCGHLLCTPCLTSWQVSNRSR 236
STF+ C IC + KD I CGHL C PCL W + +R
Sbjct: 35 STFE-CNICLDTAKDAVISLCGHLFCWPCLHQWLETRPNR 73
>sp|Q7S304|BRE1_NEUCR E3 ubiquitin-protein ligase bre-1 OS=Neurospora crassa (strain ATCC
24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987)
GN=bre-1 PE=3 SV=1
Length = 707
Score = 38.9 bits (89), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 23/100 (23%), Positives = 47/100 (47%), Gaps = 9/100 (9%)
Query: 145 EGLSGLIYSILRSYLYPDGRNVNPELSWEFISTPEDHIKVTQEQYELYCEMGSTFQ---- 200
E L L+ S + + ++ E E + D + +++++ C+ ST +
Sbjct: 590 ENLQNLVKSKDTAGRELKEKAIDKEQEAEKLKVRLDKVSSERDKWKTKCQSNSTEEEEML 649
Query: 201 ----LCKICAENDKDIRIEPCGHLLCTPCLTSWQVSNRSR 236
LC +C N K+ ++ CGH+ C C+ + +++NR R
Sbjct: 650 RNLVLCSVCRSNFKNTILKGCGHVFCNECVDN-RLANRMR 688
>sp|Q91YT2|RN185_MOUSE E3 ubiquitin-protein ligase RNF185 OS=Mus musculus GN=Rnf185 PE=2
SV=1
Length = 192
Score = 38.9 bits (89), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Query: 197 STFQLCKICAENDKDIRIEPCGHLLCTPCLTSWQVSNRSR 236
STF+ C IC + KD I CGHL C PCL W + +R
Sbjct: 35 STFE-CNICLDTAKDAVISLCGHLFCWPCLHQWLETRPNR 73
>sp|Q2U9B0|BRE1_ASPOR E3 ubiquitin-protein ligase bre1 OS=Aspergillus oryzae (strain ATCC
42149 / RIB 40) GN=bre1 PE=3 SV=1
Length = 760
Score = 38.9 bits (89), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Query: 194 EMGSTFQLCKICAENDKDIRIEPCGHLLCTPCLTSWQVSNRSR 236
EM T LC +C N K+ I+ CGH+ C C+ ++++RSR
Sbjct: 700 EMLRTLALCTVCRRNFKNTAIKTCGHVFCKDCV-EERLTSRSR 741
>sp|Q09463|RNF5_CAEEL RING finger protein 5 OS=Caenorhabditis elegans GN=rnf-5 PE=1 SV=1
Length = 235
Score = 38.5 bits (88), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 17/28 (60%)
Query: 202 CKICAENDKDIRIEPCGHLLCTPCLTSW 229
C IC + KD + CGHL C PCL+ W
Sbjct: 26 CNICLDAAKDAVVSLCGHLFCWPCLSQW 53
>sp|Q6ZMN7|PZRN4_HUMAN PDZ domain-containing RING finger protein 4 OS=Homo sapiens
GN=PDZRN4 PE=1 SV=3
Length = 1036
Score = 38.5 bits (88), Expect = 0.057, Method: Composition-based stats.
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 202 CKICAENDKDIRIEPCGHLLCTPCLTSWQVSNR 234
CK+C + ++ PCGH+ C CL W V R
Sbjct: 18 CKLCGQVLEEPLCTPCGHVFCASCLLPWAVRRR 50
>sp|Q5ZIR9|RN185_CHICK E3 ubiquitin-protein ligase RNF185 OS=Gallus gallus GN=RNF185 PE=2
SV=1
Length = 194
Score = 37.7 bits (86), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Query: 197 STFQLCKICAENDKDIRIEPCGHLLCTPCLTSWQVSNRSR 236
+TF+ C IC + KD I CGHL C PCL W + +R
Sbjct: 37 NTFE-CNICLDTAKDAVISLCGHLFCWPCLHQWLETRPNR 75
>sp|O60683|PEX10_HUMAN Peroxisome biogenesis factor 10 OS=Homo sapiens GN=PEX10 PE=1 SV=1
Length = 326
Score = 37.7 bits (86), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 24/53 (45%)
Query: 181 HIKVTQEQYELYCEMGSTFQLCKICAENDKDIRIEPCGHLLCTPCLTSWQVSN 233
H ++ + L S LC +C E + PCGHL C C+T+W S
Sbjct: 252 HRGLSHRRASLEERAVSRNPLCTLCLEERRHPTATPCGHLFCWECITAWCSSK 304
>sp|Q8HXW8|PEX10_MACFA Peroxisome biogenesis factor 10 OS=Macaca fascicularis GN=PEX10
PE=2 SV=1
Length = 326
Score = 37.4 bits (85), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 24/53 (45%)
Query: 181 HIKVTQEQYELYCEMGSTFQLCKICAENDKDIRIEPCGHLLCTPCLTSWQVSN 233
H ++ + L S LC +C E + PCGHL C C+T+W S
Sbjct: 252 HRGLSHRRGSLEERAVSRNPLCTLCLEERRHPTATPCGHLFCWECITAWCSSK 304
>sp|Q4WDD7|BRE1_ASPFU E3 ubiquitin-protein ligase bre1 OS=Neosartorya fumigata (strain
ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=bre1
PE=3 SV=2
Length = 725
Score = 37.4 bits (85), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Query: 194 EMGSTFQLCKICAENDKDIRIEPCGHLLCTPCLTSWQVSNRSR 236
EM + LC +C N K+ I+ CGH+ C C+ ++++RSR
Sbjct: 665 EMLRSLALCTVCRRNFKNTAIKTCGHVFCKECV-EERLTSRSR 706
>sp|Q99942|RNF5_HUMAN E3 ubiquitin-protein ligase RNF5 OS=Homo sapiens GN=RNF5 PE=1 SV=1
Length = 180
Score = 37.4 bits (85), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 195 MGSTFQLCKICAENDKDIRIEPCGHLLCTPCLTSW 229
G+TF+ C IC E ++ + CGHL C PCL W
Sbjct: 21 AGATFE-CNICLETAREAVVSVCGHLYCWPCLHQW 54
>sp|B1AUE5|PEX10_MOUSE Peroxisome biogenesis factor 10 OS=Mus musculus GN=Pex10 PE=2 SV=1
Length = 324
Score = 36.6 bits (83), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 201 LCKICAENDKDIRIEPCGHLLCTPCLTSW 229
LC +C E + PCGHL C C+T W
Sbjct: 270 LCTLCLEERRHSTATPCGHLFCWECITEW 298
>sp|P93030|RMA2_ARATH E3 ubiquitin-protein ligase RMA2 OS=Arabidopsis thaliana GN=RMA2
PE=1 SV=1
Length = 193
Score = 35.8 bits (81), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Query: 194 EMGSTFQLCKICAENDKDIRIEPCGHLLCTPCLTSWQ-VSNRSR 236
+ G F C IC + +D + CGHL C PC+ W SN SR
Sbjct: 14 DSGGDFD-CNICLDQVRDPVVTLCGHLFCWPCIHKWTYASNNSR 56
>sp|Q9FIY7|SM3L3_ARATH Putative SWI/SNF-related matrix-associated actin-dependent regulator
of chromatin subfamily A member 3-like 3 OS=Arabidopsis
thaliana GN=At5g43530 PE=3 SV=1
Length = 1277
Score = 35.8 bits (81), Expect = 0.33, Method: Composition-based stats.
Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Query: 202 CKICAENDKDIRIEPCGHLLCTPC-LTSWQ 230
C IC E+ D + PC H +C C LTSW+
Sbjct: 1040 CPICLESADDPVLTPCAHRMCRECLLTSWR 1069
>sp|Q5M807|RNF5_RAT E3 ubiquitin-protein ligase RNF5 OS=Rattus norvegicus GN=Rnf5 PE=2
SV=1
Length = 180
Score = 35.0 bits (79), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Query: 197 STFQLCKICAENDKDIRIEPCGHLLCTPCLTSW 229
+TF+ C IC E ++ + CGHL C PCL W
Sbjct: 23 ATFE-CNICLETAREAVVSVCGHLYCWPCLHQW 54
>sp|O35445|RNF5_MOUSE E3 ubiquitin-protein ligase RNF5 OS=Mus musculus GN=Rnf5 PE=1 SV=1
Length = 180
Score = 35.0 bits (79), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Query: 197 STFQLCKICAENDKDIRIEPCGHLLCTPCLTSW 229
+TF+ C IC E ++ + CGHL C PCL W
Sbjct: 23 ATFE-CNICLETAREAVVSVCGHLYCWPCLHQW 54
>sp|Q05568|PEX10_YEAST Peroxisome biogenesis factor 10 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=PEX10 PE=1 SV=1
Length = 337
Score = 35.0 bits (79), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 15/28 (53%)
Query: 202 CKICAENDKDIRIEPCGHLLCTPCLTSW 229
C +C N D PCGHL C CL SW
Sbjct: 286 CILCLMNMSDPSCAPCGHLFCWSCLMSW 313
>sp|Q646M7|MATK_SAPSA Maturase K OS=Sapindus saponaria GN=matK PE=3 SV=2
Length = 522
Score = 34.7 bits (78), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 8/61 (13%)
Query: 53 PFGDPPLHITLNQPEWGRESEQHAIGKMVTLVTHLDANNFLTSLQAQLY---YVFRLSCT 109
P G+P +++P W S+ H IG+ V + +L + +S + LY Y+ R+SC
Sbjct: 383 PLGNP-----ISKPTWADSSDCHIIGRFVRICRNLSHYHSGSSKKKSLYRIKYILRVSCV 437
Query: 110 R 110
+
Sbjct: 438 K 438
>sp|Q9UTL9|YIV5_SCHPO Uncharacterized ATP-dependent helicase C144.05 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPAC144.05 PE=3 SV=1
Length = 1375
Score = 34.7 bits (78), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 21/41 (51%)
Query: 189 YELYCEMGSTFQLCKICAENDKDIRIEPCGHLLCTPCLTSW 229
YE + Q+C IC + K I CGHL C+ CL +W
Sbjct: 1079 YEHIVLKAESHQICIICRDIIKQGFITTCGHLYCSFCLEAW 1119
>sp|Q8TFH8|PEX12_SCHPO Peroxisome assembly protein 12 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=pex12 PE=3 SV=2
Length = 343
Score = 33.9 bits (76), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 197 STFQLCKICAENDKDIRIEPCGHLLCTPCLTSW 229
ST +CKIC E K+ + G + C PC+ W
Sbjct: 284 STTDICKICGEKIKNPAVLSTGFVFCYPCIQVW 316
>sp|Q03601|NHL1_CAEEL RING finger protein nhl-1 OS=Caenorhabditis elegans GN=nhl-1 PE=1
SV=2
Length = 974
Score = 33.9 bits (76), Expect = 1.2, Method: Composition-based stats.
Identities = 12/27 (44%), Positives = 15/27 (55%)
Query: 202 CKICAENDKDIRIEPCGHLLCTPCLTS 228
C IC + K ++ PC H C PCL S
Sbjct: 43 CPICLDRYKQPKLLPCQHTFCYPCLES 69
>sp|Q5SWK7|RN145_MOUSE RING finger protein 145 OS=Mus musculus GN=Rnf145 PE=2 SV=1
Length = 663
Score = 33.9 bits (76), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 6/45 (13%)
Query: 185 TQEQYELYCEMGSTFQLCKICAENDKDIRIEPCGHLLCTPCLTSW 229
TQEQ E + + +C IC ++ K I PC H CL W
Sbjct: 526 TQEQLEKHND------ICAICYQDMKSAVITPCSHFFHAGCLKKW 564
>sp|Q80SY4|MIB1_MOUSE E3 ubiquitin-protein ligase MIB1 OS=Mus musculus GN=Mib1 PE=1 SV=1
Length = 1006
Score = 33.9 bits (76), Expect = 1.3, Method: Composition-based stats.
Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 9/49 (18%)
Query: 198 TFQLCKICAENDKDIRIEPCGHL----LCTP----CLT-SWQVSNRSRI 237
T + C +C++ +D PCGH+ LC+P CL QV +R++I
Sbjct: 815 TLEECMVCSDMKRDTLFGPCGHIATCSLCSPRVKKCLICKEQVQSRTKI 863
>sp|Q86YT6|MIB1_HUMAN E3 ubiquitin-protein ligase MIB1 OS=Homo sapiens GN=MIB1 PE=1 SV=1
Length = 1006
Score = 33.9 bits (76), Expect = 1.3, Method: Composition-based stats.
Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 9/49 (18%)
Query: 198 TFQLCKICAENDKDIRIEPCGHL----LCTP----CLT-SWQVSNRSRI 237
T + C +C++ +D PCGH+ LC+P CL QV +R++I
Sbjct: 815 TLEECMVCSDMKRDTLFGPCGHIATCSLCSPRVKKCLICKEQVQSRTKI 863
>sp|Q804S5|MIB1_DANRE E3 ubiquitin-protein ligase mib1 OS=Danio rerio GN=mib1 PE=1 SV=1
Length = 1030
Score = 33.9 bits (76), Expect = 1.3, Method: Composition-based stats.
Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 9/49 (18%)
Query: 198 TFQLCKICAENDKDIRIEPCGHL----LCTP----CLT-SWQVSNRSRI 237
T + C +C++ +D PCGH+ LC+P CL QV +R++I
Sbjct: 813 TLEECMVCSDMKRDTLFGPCGHIATCSLCSPRVKKCLICKEQVQSRTKI 861
>sp|Q8RXD6|BRE1A_ARATH E3 ubiquitin-protein ligase BRE1-like 1 OS=Arabidopsis thaliana
GN=HUB1 PE=1 SV=1
Length = 878
Score = 33.9 bits (76), Expect = 1.4, Method: Composition-based stats.
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 202 CKICAENDKDIRIEPCGHLLCTPCL 226
CK C + K++ I C HL C PC+
Sbjct: 826 CKACNDRPKEVVITKCYHLFCNPCV 850
>sp|Q99ML9|RN111_MOUSE E3 ubiquitin-protein ligase Arkadia OS=Mus musculus GN=Rnf111 PE=1
SV=1
Length = 989
Score = 33.5 bits (75), Expect = 1.4, Method: Composition-based stats.
Identities = 21/75 (28%), Positives = 33/75 (44%), Gaps = 13/75 (17%)
Query: 173 EFISTPEDHIKVTQE---QYELYCEMGSTFQL-------CKICA---ENDKDIRIEPCGH 219
E + P + KVT + Q +L+C+ C IC E +D+R PC H
Sbjct: 898 ERCTYPHKYKKVTTDWFSQRKLHCKQDGEEGTEEDTEEKCTICLSILEEGEDVRRLPCMH 957
Query: 220 LLCTPCLTSWQVSNR 234
L C+ W ++N+
Sbjct: 958 LFHQVCVDQWLITNK 972
>sp|Q5A4X0|BRE1_CANAL E3 ubiquitin-protein ligase BRE1 OS=Candida albicans (strain SC5314
/ ATCC MYA-2876) GN=BRE1 PE=3 SV=1
Length = 681
Score = 33.5 bits (75), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 16/24 (66%)
Query: 202 CKICAENDKDIRIEPCGHLLCTPC 225
C +C++N KD I CGH+ C+ C
Sbjct: 629 CSVCSKNWKDTAITVCGHVFCSKC 652
>sp|A9JTP3|BIRC7_XENTR Baculoviral IAP repeat-containing protein 7 OS=Xenopus tropicalis
GN=birc7 PE=2 SV=1
Length = 365
Score = 33.5 bits (75), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
Query: 200 QLCKICAENDKDIRIEPCGHL-LCTPC 225
++CK+C +ND + PCGHL +CT C
Sbjct: 316 RMCKVCMDNDVSMVFVPCGHLVVCTEC 342
>sp|Q6ZNA4|RN111_HUMAN E3 ubiquitin-protein ligase Arkadia OS=Homo sapiens GN=RNF111 PE=1
SV=3
Length = 994
Score = 33.5 bits (75), Expect = 1.6, Method: Composition-based stats.
Identities = 21/75 (28%), Positives = 33/75 (44%), Gaps = 13/75 (17%)
Query: 173 EFISTPEDHIKVTQE---QYELYCEMGSTFQL-------CKICA---ENDKDIRIEPCGH 219
E + P + KVT + Q +L+C+ C IC E +D+R PC H
Sbjct: 903 ERCTYPHKYKKVTTDWFSQRKLHCKQDGEEGTEEDTEEKCTICLSILEEGEDVRRLPCMH 962
Query: 220 LLCTPCLTSWQVSNR 234
L C+ W ++N+
Sbjct: 963 LFHQVCVDQWLITNK 977
>sp|Q336R3|BRE1B_ORYSJ E3 ubiquitin-protein ligase BRE1-like 2 OS=Oryza sativa subsp.
japonica GN=BRE1B PE=2 SV=1
Length = 844
Score = 33.5 bits (75), Expect = 1.7, Method: Composition-based stats.
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 202 CKICAENDKDIRIEPCGHLLCTPCL 226
C +C + K++ I C HL C+PC+
Sbjct: 792 CGVCFDRPKEVVITKCFHLFCSPCI 816
>sp|A2ZAC2|BRE1B_ORYSI E3 ubiquitin-protein ligase BRE1-like 2 OS=Oryza sativa subsp.
indica GN=BRE1B PE=3 SV=2
Length = 844
Score = 33.5 bits (75), Expect = 1.7, Method: Composition-based stats.
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 202 CKICAENDKDIRIEPCGHLLCTPCL 226
C +C + K++ I C HL C+PC+
Sbjct: 792 CGVCFDRPKEVVITKCFHLFCSPCI 816
>sp|A9ULZ2|BIR7B_XENLA Baculoviral IAP repeat-containing protein 7-B OS=Xenopus laevis
GN=birc7-b PE=2 SV=2
Length = 345
Score = 33.5 bits (75), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 13/66 (19%)
Query: 161 PDGRNVNPELSWEFISTPEDHIKVTQEQYELYCEMGSTFQLCKICAENDKDIRIEPCGHL 220
P R+ P++S +ST E ++ +E+ +CK+C + D + PCGHL
Sbjct: 269 PGERSEPPKVSGPPLSTEEQLQRLKEER------------MCKVCMDKDVSMLFVPCGHL 316
Query: 221 -LCTPC 225
+CT C
Sbjct: 317 VVCTEC 322
>sp|Q24307|IAP2_DROME Apoptosis 2 inhibitor OS=Drosophila melanogaster GN=Iap2 PE=2 SV=3
Length = 498
Score = 33.5 bits (75), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 38/77 (49%), Gaps = 12/77 (15%)
Query: 175 ISTPEDHIKVTQEQYELYCEMGSTFQLCKICAENDKDIRIEPCGHLL-CTPCLTSWQVSN 233
++TP ++ + +E +L +LCK+C + + + PCGHL C C S V+N
Sbjct: 429 VATPNGNLSLEEENRQL-----KDARLCKVCLDEEVGVVFLPCGHLATCNQCAPS--VAN 481
Query: 234 ----RSRILFYLFYFFS 246
R+ I ++ F S
Sbjct: 482 CPMCRADIKGFVRTFLS 498
>sp|Q8GUK7|RMA3_ARATH E3 ubiquitin-protein ligase RMA3 OS=Arabidopsis thaliana GN=RMA3
PE=1 SV=1
Length = 243
Score = 33.5 bits (75), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 15/28 (53%)
Query: 202 CKICAENDKDIRIEPCGHLLCTPCLTSW 229
C IC + D + CGHL C PC+ W
Sbjct: 44 CNICLDTAHDPVVTLCGHLFCWPCIYKW 71
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.326 0.141 0.453
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 100,778,662
Number of Sequences: 539616
Number of extensions: 4245175
Number of successful extensions: 12129
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 47
Number of HSP's that attempted gapping in prelim test: 12015
Number of HSP's gapped (non-prelim): 150
length of query: 264
length of database: 191,569,459
effective HSP length: 115
effective length of query: 149
effective length of database: 129,513,619
effective search space: 19297529231
effective search space used: 19297529231
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 60 (27.7 bits)