Query psy9201
Match_columns 264
No_of_seqs 214 out of 1531
Neff 4.9
Searched_HMMs 46136
Date Fri Aug 16 21:29:39 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9201.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/9201hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1785|consensus 100.0 6.2E-62 1.4E-66 461.6 4.4 169 74-252 244-423 (563)
2 PF02762 Cbl_N3: CBL proto-onc 100.0 1.5E-42 3.3E-47 264.3 0.4 76 85-170 1-86 (86)
3 KOG0317|consensus 99.7 2E-16 4.3E-21 146.2 7.5 51 201-252 241-291 (293)
4 KOG0823|consensus 99.5 1.5E-14 3.3E-19 130.3 3.4 61 196-257 45-107 (230)
5 PLN03208 E3 ubiquitin-protein 99.3 1.4E-12 3E-17 115.3 2.7 56 201-256 20-90 (193)
6 PF13920 zf-C3HC4_3: Zinc fing 99.1 1.1E-10 2.4E-15 81.3 3.2 45 201-246 4-49 (50)
7 PF15227 zf-C3HC4_4: zinc fing 99.0 1.6E-10 3.6E-15 78.7 3.5 39 202-240 1-42 (42)
8 KOG0320|consensus 99.0 7.7E-11 1.7E-15 103.1 1.8 52 201-253 133-186 (187)
9 PF13923 zf-C3HC4_2: Zinc fing 99.0 1.4E-10 3.1E-15 77.0 2.7 38 202-240 1-39 (39)
10 smart00504 Ubox Modified RING 99.0 2.3E-10 4.9E-15 82.0 3.4 53 201-254 3-55 (63)
11 PF13639 zf-RING_2: Ring finge 98.9 3.5E-10 7.5E-15 76.8 2.0 40 201-241 2-44 (44)
12 KOG0978|consensus 98.9 2.1E-10 4.6E-15 117.1 1.1 67 183-253 631-697 (698)
13 PHA02929 N1R/p28-like protein; 98.8 1.5E-09 3.3E-14 99.0 3.4 47 200-247 175-229 (238)
14 PF00097 zf-C3HC4: Zinc finger 98.8 1.9E-09 4.1E-14 71.7 2.8 39 202-240 1-41 (41)
15 cd00162 RING RING-finger (Real 98.8 2.6E-09 5.7E-14 69.8 2.9 44 201-244 1-45 (45)
16 smart00184 RING Ring finger. E 98.8 3.2E-09 7E-14 67.0 2.5 39 202-240 1-39 (39)
17 COG5574 PEX10 RING-finger-cont 98.8 2.8E-09 6.1E-14 98.1 2.8 50 201-250 217-267 (271)
18 KOG2164|consensus 98.7 7.9E-09 1.7E-13 102.2 3.8 61 196-256 183-247 (513)
19 PHA02926 zinc finger-like prot 98.7 8.5E-09 1.8E-13 93.3 3.7 53 197-249 168-234 (242)
20 PF04564 U-box: U-box domain; 98.7 1.3E-08 2.8E-13 76.5 3.9 54 201-254 6-59 (73)
21 TIGR00599 rad18 DNA repair pro 98.6 1.7E-08 3.8E-13 98.0 2.9 49 201-250 28-76 (397)
22 PF14634 zf-RING_5: zinc-RING 98.6 2.7E-08 5.9E-13 67.9 2.5 40 202-242 2-44 (44)
23 KOG4628|consensus 98.5 3.6E-08 7.7E-13 94.2 2.5 47 200-246 230-279 (348)
24 COG5243 HRD1 HRD ubiquitin lig 98.5 6.5E-08 1.4E-12 93.1 3.3 50 198-248 286-348 (491)
25 PF12678 zf-rbx1: RING-H2 zinc 98.5 8.1E-08 1.8E-12 72.5 3.2 40 201-241 21-73 (73)
26 PF13445 zf-RING_UBOX: RING-ty 98.5 7.2E-08 1.6E-12 66.4 1.9 36 202-238 1-43 (43)
27 KOG4172|consensus 98.4 4.4E-08 9.5E-13 71.2 -0.4 47 200-246 8-55 (62)
28 COG5540 RING-finger-containing 98.3 2.3E-07 4.9E-12 87.4 2.7 46 201-246 325-373 (374)
29 KOG0287|consensus 98.3 1.7E-07 3.6E-12 89.5 1.3 46 201-247 25-70 (442)
30 KOG2177|consensus 98.3 3.1E-07 6.6E-12 78.8 1.7 41 201-242 15-55 (386)
31 COG5432 RAD18 RING-finger-cont 98.3 3.7E-07 8E-12 85.7 1.9 46 200-246 26-71 (391)
32 TIGR00570 cdk7 CDK-activating 98.2 1E-06 2.2E-11 83.2 3.6 51 201-251 5-60 (309)
33 KOG0802|consensus 98.2 5.3E-07 1.1E-11 90.4 1.5 47 200-247 292-343 (543)
34 PF12861 zf-Apc11: Anaphase-pr 98.1 1.4E-06 3E-11 68.3 2.5 35 212-246 47-83 (85)
35 PF14835 zf-RING_6: zf-RING of 98.1 1.4E-06 3E-11 65.1 1.3 45 201-248 9-54 (65)
36 KOG4265|consensus 97.9 5.8E-06 1.3E-10 79.1 2.0 46 201-247 292-338 (349)
37 KOG0824|consensus 97.8 5.8E-06 1.3E-10 77.8 1.6 47 201-247 9-55 (324)
38 KOG0311|consensus 97.8 2.5E-06 5.4E-11 81.7 -1.4 47 201-247 45-92 (381)
39 KOG1039|consensus 97.6 1.9E-05 4.1E-10 75.8 1.7 65 199-263 161-239 (344)
40 KOG1002|consensus 97.6 4.3E-05 9.3E-10 76.8 3.3 211 9-248 349-589 (791)
41 KOG2879|consensus 97.5 0.00016 3.4E-09 67.6 5.9 47 201-247 241-289 (298)
42 KOG0297|consensus 97.5 4.5E-05 9.7E-10 74.0 1.8 50 201-251 23-73 (391)
43 COG5152 Uncharacterized conser 97.4 4.9E-05 1.1E-09 68.4 0.8 43 201-244 198-240 (259)
44 KOG3039|consensus 97.4 0.00012 2.7E-09 67.6 3.3 53 201-254 223-279 (303)
45 KOG4159|consensus 97.4 8E-05 1.7E-09 72.8 2.2 48 197-246 83-130 (398)
46 KOG4275|consensus 97.2 7.2E-05 1.6E-09 70.5 -0.4 43 199-246 300-343 (350)
47 KOG0828|consensus 97.1 0.00016 3.4E-09 72.2 1.0 46 201-246 573-635 (636)
48 smart00744 RINGv The RING-vari 97.1 0.00033 7.1E-09 49.3 2.3 41 201-241 1-49 (49)
49 KOG4692|consensus 97.1 0.00023 4.9E-09 68.8 1.9 49 197-246 420-468 (489)
50 KOG0827|consensus 97.1 0.00028 6E-09 68.7 2.3 50 201-250 6-61 (465)
51 KOG1571|consensus 97.0 0.0003 6.6E-09 67.6 2.2 45 198-246 304-348 (355)
52 COG5219 Uncharacterized conser 97.0 0.00025 5.4E-09 75.3 1.7 50 196-245 1466-1523(1525)
53 PF11789 zf-Nse: Zinc-finger o 97.0 0.00044 9.6E-09 50.2 2.4 39 201-239 13-53 (57)
54 PF04641 Rtf2: Rtf2 RING-finge 96.9 0.00081 1.8E-08 61.7 3.7 54 201-256 115-172 (260)
55 KOG1813|consensus 96.7 0.00056 1.2E-08 64.5 1.1 44 201-245 243-286 (313)
56 PF14447 Prok-RING_4: Prokaryo 96.7 0.001 2.2E-08 48.4 1.8 46 200-248 8-53 (55)
57 KOG0804|consensus 96.5 0.00072 1.6E-08 66.8 0.4 42 201-245 177-222 (493)
58 KOG1734|consensus 96.5 0.00089 1.9E-08 62.7 0.7 47 201-247 226-283 (328)
59 KOG1493|consensus 96.4 0.00064 1.4E-08 52.7 -0.8 33 213-245 47-81 (84)
60 COG5236 Uncharacterized conser 96.2 0.0025 5.4E-08 61.7 1.9 45 199-244 61-107 (493)
61 KOG4185|consensus 96.2 0.0031 6.8E-08 58.0 2.6 44 201-244 5-54 (296)
62 COG5222 Uncharacterized conser 96.1 0.0019 4.2E-08 61.4 0.9 43 200-242 275-318 (427)
63 KOG0825|consensus 96.1 0.0013 2.9E-08 68.7 -0.3 53 201-254 125-180 (1134)
64 KOG1001|consensus 96.0 0.0018 4E-08 67.1 0.2 48 201-249 456-504 (674)
65 PF11793 FANCL_C: FANCL C-term 96.0 0.0018 3.9E-08 48.6 0.1 46 201-246 4-67 (70)
66 KOG0826|consensus 96.0 0.003 6.5E-08 60.5 1.4 54 200-254 301-355 (357)
67 PF14570 zf-RING_4: RING/Ubox 95.9 0.0066 1.4E-07 43.0 2.4 43 202-244 1-47 (48)
68 KOG4739|consensus 95.7 0.0036 7.7E-08 57.4 0.8 48 201-251 5-54 (233)
69 KOG2660|consensus 95.7 0.0027 5.8E-08 60.6 -0.3 49 199-248 15-64 (331)
70 KOG1645|consensus 95.6 0.0039 8.5E-08 61.2 0.6 55 201-255 6-66 (463)
71 COG5194 APC11 Component of SCF 95.5 0.0091 2E-07 46.8 2.1 34 212-246 49-82 (88)
72 KOG1100|consensus 95.4 0.0085 1.8E-07 53.9 1.9 40 202-246 161-201 (207)
73 KOG1814|consensus 94.6 0.021 4.5E-07 56.2 2.5 45 197-242 183-237 (445)
74 KOG3800|consensus 94.6 0.019 4.1E-07 54.2 2.1 46 201-246 2-52 (300)
75 PHA03096 p28-like protein; Pro 93.7 0.028 6.1E-07 52.9 1.2 42 201-242 180-231 (284)
76 KOG1941|consensus 93.6 0.023 5.1E-07 55.8 0.5 45 201-245 367-416 (518)
77 PHA02862 5L protein; Provision 93.4 0.05 1.1E-06 46.9 2.2 46 200-246 3-54 (156)
78 PF04757 Pex2_Pex12: Pex2 / Pe 93.1 0.038 8.1E-07 48.6 1.0 34 23-56 145-179 (229)
79 PHA02825 LAP/PHD finger-like p 93.0 0.076 1.7E-06 46.3 2.7 46 201-247 10-61 (162)
80 COG5220 TFB3 Cdk activating ki 92.9 0.039 8.5E-07 51.3 0.9 44 201-244 12-63 (314)
81 KOG4367|consensus 92.8 0.059 1.3E-06 53.8 1.9 31 201-231 6-36 (699)
82 PF07800 DUF1644: Protein of u 92.6 0.082 1.8E-06 46.1 2.3 50 201-250 4-96 (162)
83 KOG3002|consensus 92.5 0.075 1.6E-06 50.4 2.1 42 201-246 50-92 (299)
84 KOG3970|consensus 92.4 0.074 1.6E-06 49.1 1.9 45 201-245 52-105 (299)
85 PF10272 Tmpp129: Putative tra 92.4 0.11 2.5E-06 50.4 3.2 54 197-250 269-356 (358)
86 KOG2930|consensus 91.0 0.1 2.2E-06 42.7 1.1 29 214-243 78-106 (114)
87 KOG2817|consensus 90.7 0.18 4E-06 49.4 2.8 55 197-252 333-392 (394)
88 PF05290 Baculo_IE-1: Baculovi 90.6 0.16 3.4E-06 43.3 1.9 48 201-248 82-135 (140)
89 PF12906 RINGv: RING-variant d 90.5 0.14 3.1E-06 35.5 1.3 39 202-240 1-47 (47)
90 KOG4445|consensus 90.3 0.11 2.5E-06 49.6 0.9 49 199-247 115-188 (368)
91 KOG3039|consensus 90.3 0.19 4.1E-06 46.9 2.3 36 196-231 40-75 (303)
92 COG5175 MOT2 Transcriptional r 89.7 0.18 3.8E-06 49.1 1.7 49 201-249 16-68 (480)
93 KOG4362|consensus 89.5 0.11 2.3E-06 54.2 0.1 57 201-259 23-81 (684)
94 PF10367 Vps39_2: Vacuolar sor 88.4 0.22 4.8E-06 38.4 1.2 29 199-227 78-108 (109)
95 KOG2932|consensus 88.2 0.14 3.1E-06 49.1 -0.0 45 201-248 92-137 (389)
96 KOG3899|consensus 88.0 0.22 4.9E-06 47.5 1.1 34 217-250 325-370 (381)
97 PF05883 Baculo_RING: Baculovi 88.0 0.21 4.5E-06 42.5 0.8 32 200-231 27-67 (134)
98 KOG0298|consensus 87.2 0.2 4.4E-06 55.4 0.3 41 201-242 1155-1196(1394)
99 COG0068 HypF Hydrogenase matur 86.0 0.38 8.3E-06 50.5 1.6 126 102-242 17-181 (750)
100 KOG1940|consensus 86.0 0.4 8.8E-06 45.1 1.6 41 201-242 160-204 (276)
101 KOG2114|consensus 84.4 0.7 1.5E-05 49.4 2.6 39 201-243 842-881 (933)
102 KOG1952|consensus 83.4 0.91 2E-05 48.6 3.0 44 201-244 193-246 (950)
103 KOG3161|consensus 82.8 0.43 9.4E-06 49.7 0.3 37 201-241 13-53 (861)
104 KOG3113|consensus 82.7 1 2.2E-05 42.3 2.7 51 201-254 113-167 (293)
105 COG5183 SSM4 Protein involved 82.7 0.78 1.7E-05 49.1 2.1 52 197-248 10-69 (1175)
106 PF08746 zf-RING-like: RING-li 82.3 1.7 3.6E-05 29.8 3.0 39 202-240 1-43 (43)
107 PF03854 zf-P11: P-11 zinc fin 82.1 1.2 2.7E-05 31.7 2.3 43 201-246 4-47 (50)
108 KOG1428|consensus 81.2 0.7 1.5E-05 52.4 1.2 49 199-247 3486-3546(3738)
109 KOG1812|consensus 80.5 0.71 1.5E-05 45.1 0.9 56 200-255 147-213 (384)
110 KOG2034|consensus 80.1 0.71 1.5E-05 49.5 0.8 35 197-231 815-851 (911)
111 KOG1815|consensus 75.7 1.3 2.9E-05 43.7 1.2 55 201-255 72-136 (444)
112 KOG3268|consensus 74.0 2 4.4E-05 38.6 1.8 46 201-246 167-229 (234)
113 PF14569 zf-UDP: Zinc-binding 72.8 3 6.6E-05 32.5 2.3 49 200-248 10-65 (80)
114 KOG4185|consensus 72.3 0.59 1.3E-05 43.1 -2.0 43 201-243 209-265 (296)
115 KOG3579|consensus 70.1 2.5 5.5E-05 40.4 1.6 32 200-231 269-304 (352)
116 PF04216 FdhE: Protein involve 68.3 1.6 3.5E-05 40.5 -0.1 43 200-243 173-220 (290)
117 KOG0825|consensus 66.2 2.9 6.2E-05 44.9 1.2 44 201-244 101-153 (1134)
118 PF10235 Cript: Microtubule-as 66.1 3.9 8.6E-05 32.6 1.7 39 199-247 44-82 (90)
119 PLN02195 cellulose synthase A 66.0 5.4 0.00012 43.6 3.3 55 197-251 4-65 (977)
120 KOG3842|consensus 62.6 6.8 0.00015 38.1 2.9 50 199-248 341-417 (429)
121 KOG0802|consensus 62.6 2 4.3E-05 43.5 -0.7 47 200-251 480-526 (543)
122 PLN02189 cellulose synthase 61.9 5.4 0.00012 43.8 2.4 47 200-246 35-88 (1040)
123 KOG3053|consensus 59.5 4.2 9.1E-05 38.4 0.9 44 201-244 22-81 (293)
124 PLN02436 cellulose synthase A 58.8 6.6 0.00014 43.4 2.4 47 200-246 37-90 (1094)
125 TIGR01562 FdhE formate dehydro 58.6 3.2 7E-05 39.6 0.0 42 201-243 186-233 (305)
126 PF07975 C1_4: TFIIH C1-like d 58.4 8.3 0.00018 27.6 2.1 27 214-241 24-50 (51)
127 KOG0309|consensus 57.5 5.9 0.00013 42.4 1.7 37 202-239 1031-1069(1081)
128 KOG2113|consensus 57.3 7 0.00015 37.9 2.0 41 200-243 344-385 (394)
129 KOG0289|consensus 56.8 6.2 0.00013 39.7 1.6 57 201-258 2-59 (506)
130 PLN02638 cellulose synthase A 52.8 9.7 0.00021 42.1 2.4 45 201-245 19-70 (1079)
131 PF04710 Pellino: Pellino; In 52.8 4.6 9.9E-05 40.1 0.0 47 200-246 329-402 (416)
132 KOG3842|consensus 52.3 6.2 0.00013 38.4 0.8 35 213-253 318-357 (429)
133 KOG0827|consensus 51.2 1.9 4.2E-05 42.7 -2.8 46 201-247 198-247 (465)
134 PLN02400 cellulose synthase 50.5 9.8 0.00021 42.1 2.0 47 200-246 37-90 (1085)
135 KOG2231|consensus 49.3 11 0.00023 39.9 2.0 44 202-245 3-52 (669)
136 PLN02915 cellulose synthase A 47.7 13 0.00027 41.1 2.3 47 200-246 16-69 (1044)
137 KOG2113|consensus 47.5 6.1 0.00013 38.4 -0.0 47 201-247 138-185 (394)
138 PRK03564 formate dehydrogenase 45.5 8.7 0.00019 36.8 0.7 42 200-242 188-234 (309)
139 PF01363 FYVE: FYVE zinc finge 45.3 2.7 5.9E-05 30.4 -2.2 30 201-230 11-44 (69)
140 PF02891 zf-MIZ: MIZ/SP-RING z 45.1 16 0.00035 25.6 1.8 42 201-243 4-50 (50)
141 KOG1815|consensus 43.9 13 0.00028 36.8 1.6 19 211-229 178-196 (444)
142 COG5109 Uncharacterized conser 43.8 16 0.00035 35.6 2.2 51 201-251 338-393 (396)
143 KOG4718|consensus 43.8 12 0.00026 34.5 1.2 43 201-244 183-226 (235)
144 cd00065 FYVE FYVE domain; Zinc 41.8 9.1 0.0002 26.5 0.1 31 201-231 4-38 (57)
145 KOG1812|consensus 41.6 13 0.00029 36.3 1.3 33 201-233 308-345 (384)
146 PF07191 zinc-ribbons_6: zinc- 40.6 4.9 0.00011 30.7 -1.5 39 201-245 3-41 (70)
147 KOG2068|consensus 39.7 20 0.00043 34.8 2.1 45 201-246 251-299 (327)
148 KOG0269|consensus 39.4 25 0.00055 37.7 2.9 42 201-243 781-826 (839)
149 smart00647 IBR In Between Ring 38.9 7.7 0.00017 27.0 -0.6 14 216-229 45-58 (64)
150 TIGR01245 trpD anthranilate ph 38.8 24 0.00052 33.6 2.5 61 32-100 143-206 (330)
151 PF14319 Zn_Tnp_IS91: Transpos 38.8 31 0.00068 27.9 2.9 22 202-225 45-66 (111)
152 PF04710 Pellino: Pellino; In 38.6 10 0.00022 37.7 0.0 31 213-246 305-340 (416)
153 KOG3799|consensus 37.1 20 0.00043 31.0 1.5 22 200-225 66-87 (169)
154 PF10833 DUF2572: Protein of u 36.2 16 0.00035 33.5 0.9 34 18-51 4-37 (221)
155 KOG1609|consensus 35.5 21 0.00045 32.5 1.5 48 200-247 79-136 (323)
156 KOG1356|consensus 34.8 13 0.00029 40.1 0.1 47 200-246 230-283 (889)
157 PF04423 Rad50_zn_hook: Rad50 32.7 11 0.00023 26.5 -0.7 13 236-248 22-34 (54)
158 PF10497 zf-4CXXC_R1: Zinc-fin 32.5 39 0.00084 27.3 2.4 26 218-243 37-70 (105)
159 KOG2807|consensus 30.5 26 0.00055 34.3 1.2 40 201-241 332-374 (378)
160 PF06906 DUF1272: Protein of u 30.2 56 0.0012 24.1 2.7 43 202-247 8-54 (57)
161 PF09297 zf-NADH-PPase: NADH p 29.8 12 0.00026 23.6 -0.8 26 218-243 2-30 (32)
162 PRK00418 DNA gyrase inhibitor; 29.4 29 0.00062 25.9 1.1 11 235-245 7-17 (62)
163 TIGR00622 ssl1 transcription f 28.9 33 0.00071 28.4 1.4 40 201-241 57-110 (112)
164 KOG3476|consensus 28.1 12 0.00025 30.1 -1.3 42 196-247 51-92 (100)
165 PF06750 DiS_P_DiS: Bacterial 28.1 23 0.0005 27.8 0.4 21 234-254 33-53 (92)
166 PRK11595 DNA utilization prote 27.5 48 0.001 29.6 2.4 38 201-244 7-44 (227)
167 PF15616 TerY-C: TerY-C metal 26.5 37 0.0008 28.8 1.4 39 201-246 79-117 (131)
168 PRK04023 DNA polymerase II lar 26.1 39 0.00085 37.5 1.8 45 201-248 628-677 (1121)
169 smart00290 ZnF_UBP Ubiquitin C 25.8 35 0.00076 22.9 1.0 24 202-225 2-25 (50)
170 PF01485 IBR: IBR domain; Int 25.2 14 0.00031 25.6 -1.2 15 215-229 44-58 (64)
171 PF09723 Zn-ribbon_8: Zinc rib 25.0 26 0.00056 23.5 0.2 27 214-242 8-34 (42)
172 cd06397 PB1_UP1 Uncharacterize 24.7 81 0.0018 24.9 2.9 45 96-144 25-69 (82)
173 PF12773 DZR: Double zinc ribb 24.4 53 0.0012 22.2 1.7 28 219-246 12-41 (50)
174 PF02318 FYVE_2: FYVE-type zin 24.4 11 0.00025 30.5 -2.0 42 201-242 56-102 (118)
175 PF15145 DUF4577: Domain of un 23.9 42 0.00092 28.1 1.2 47 2-48 41-100 (128)
176 PF10083 DUF2321: Uncharacteri 23.0 37 0.0008 29.7 0.8 26 219-248 28-53 (158)
177 PF13240 zinc_ribbon_2: zinc-r 22.2 21 0.00046 21.3 -0.6 11 233-243 12-22 (23)
178 COG4647 AcxC Acetone carboxyla 21.8 45 0.00098 28.7 1.0 21 204-224 62-82 (165)
179 smart00064 FYVE Protein presen 21.8 62 0.0013 23.1 1.6 31 201-231 12-46 (68)
180 PF10571 UPF0547: Uncharacteri 21.8 41 0.00089 20.7 0.6 11 236-246 2-12 (26)
181 COG3813 Uncharacterized protei 21.7 87 0.0019 24.4 2.5 47 202-251 8-58 (84)
182 PF02044 Bombesin: Bombesin-li 21.6 28 0.00061 18.8 -0.1 7 113-119 3-9 (14)
183 COG1545 Predicted nucleic-acid 21.3 55 0.0012 27.6 1.5 24 212-244 30-53 (140)
184 KOG1553|consensus 20.7 34 0.00074 34.1 0.1 51 67-119 257-323 (517)
No 1
>KOG1785|consensus
Probab=100.00 E-value=6.2e-62 Score=461.63 Aligned_cols=169 Identities=61% Similarity=1.019 Sum_probs=161.9
Q ss_pred ccccceeEEeeccchhHHHHHH--HHHHH--------HhhhhhhhhhhcccccccccCCcceeeccCCCchHHHHHhccc
Q psy9201 74 QHAIGKMVTLVTHLDANNFLTS--LQAQL--------YYVFRLSCTRLGQWAIGYVTADGDILQTIPQNKSLCQALLDGY 143 (264)
Q Consensus 74 ~~~~~~~~l~v~~~~~~a~~ty--v~~~l--------s~~f~~s~~rlgqw~ig~vs~d~~~~qtIp~nksl~qALLdg~ 143 (264)
-..-||+.|||+|||||||||| ||+|| |||||+|||||||||||||++||+|+||||+||+++|||+||.
T Consensus 244 tllkNWq~LavtHPGYmAFLTYDEVk~RLqk~~~KpGSYIFRlSCTRlGQWAIGYVt~dG~IlQTIP~NKpL~QaL~eG~ 323 (563)
T KOG1785|consen 244 TLLKNWQTLAVTHPGYMAFLTYDEVKARLQKYIKKPGSYIFRLSCTRLGQWAIGYVTADGNILQTIPQNKPLFQALLEGH 323 (563)
T ss_pred HHHHhhhhhhccCCceeEEeeHHHHHHHHHHHhcCCCceEEeeccCcccceeEEEEcCCCceeeccCCCcHHHHHHHhcc
Confidence 4567999999999999999999 99999 9999999999999999999999999999999999999999999
Q ss_pred cccchhhHHHHHHHhcCCCCCCCCCCccccccCCCcccccccHHHHHHHHhhCCcccccccccccccCceeeCCCCeecH
Q psy9201 144 REGLSGLIYSILRSYLYPDGRNVNPELSWEFISTPEDHIKVTQEQYELYCEMGSTFQLCKICAENDKDIRIEPCGHLLCT 223 (264)
Q Consensus 144 Reg~s~i~~~ll~~yl~Pdgr~~npdls~l~~~~~e~~i~vtqEq~e~~~e~~st~elC~ICle~~kdpvitpCGH~FC~ 223 (264)
|||+ |+||||++.|||++.+.+.+++++++|++||+++||+|+++|++|+||.|+.||+.+.||||.+|.
T Consensus 324 keGF----------YlyPdGr~~npdLt~l~~~~p~d~i~VtqEQyeLYceMgsTFeLCKICaendKdvkIEPCGHLlCt 393 (563)
T KOG1785|consen 324 KEGF----------YLYPDGRDQNPDLTGLCQPPPQDRIKVTQEQYELYCEMGSTFELCKICAENDKDVKIEPCGHLLCT 393 (563)
T ss_pred ccce----------EECCCCccCCCChhhccCCCcccceeeeHHHHHHHHHccchHHHHHHhhccCCCcccccccchHHH
Confidence 9999 999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHhccC-CCcccccccccccccceec
Q psy9201 224 PCLTSWQVSN-RSRILFYLFYFFSVKEIPL 252 (264)
Q Consensus 224 ~CI~~wl~s~-~~~CP~CR~~i~~~~vipl 252 (264)
.|+..|..++ ..+||+||.+|+..+.+-+
T Consensus 394 ~CLa~WQ~sd~gq~CPFCRcEIKGte~vii 423 (563)
T KOG1785|consen 394 SCLAAWQDSDEGQTCPFCRCEIKGTEPVII 423 (563)
T ss_pred HHHHhhcccCCCCCCCceeeEeccccceee
Confidence 9999999765 7899999999988764433
No 2
>PF02762 Cbl_N3: CBL proto-oncogene N-terminus, SH2-like domain; InterPro: IPR014742 Cbl (Casitas B-lineage lymphoma) is an adaptor protein that functions as a negative regulator of many signalling pathways that start from receptors at the cell surface. The N-terminal region of Cbl contains a Cbl-type phosphotyrosine-binding (Cbl-PTB) domain, which is composed of three evolutionarily conserved domains: an N-terminal four-helix bundle (4H) domain, an EF hand-like calcium-binding domain, and a divergent SH2-like domain. The calcium-bound EF-hand wedges between the 4H and SH2 domains, and roughly determines their relative orientation. The Cbl-PTB domain has also been named Cbl N-terminal (Cbl-N) or tyrosine kinase binding (TKB) domain [, ]. The N-terminal 4H domain contains four long alpha-helices. The C and D helices in this domain pack against the adjacent EF-hand-like domain, and a highly conserved loop connecting the A and B helices contacts the SH2-like domain. The EF-hand motif is similar to classical EF-hand proteins. The SH2-like domain retains the general helix-sheet-helix architecture of the SH2 fold, but lacks the secondary beta-sheet, comprising beta-strands D', E and F, and also a prominent BG loop []. This entry represents the SH2-like domain.; PDB: 3PFV_A 3VGO_A 3PLF_B 2Y1M_A 2CBL_A 3BUX_B 3BUN_B 3BUM_B 3OB1_B 3BUW_B ....
Probab=100.00 E-value=1.5e-42 Score=264.34 Aligned_cols=76 Identities=72% Similarity=1.195 Sum_probs=64.0
Q ss_pred ccchhHHHHHH--HHHHH--------HhhhhhhhhhhcccccccccCCcceeeccCCCchHHHHHhccccccchhhHHHH
Q psy9201 85 THLDANNFLTS--LQAQL--------YYVFRLSCTRLGQWAIGYVTADGDILQTIPQNKSLCQALLDGYREGLSGLIYSI 154 (264)
Q Consensus 85 ~~~~~~a~~ty--v~~~l--------s~~f~~s~~rlgqw~ig~vs~d~~~~qtIp~nksl~qALLdg~Reg~s~i~~~l 154 (264)
+|||||||||| ||++| |||||+|||||||||||||++||+|+||||+|||++|||+||.|||+
T Consensus 1 tHpgY~AFlTYdevk~~L~~~~~kpGsYiFRlSCTrLGQWAIGyV~~dg~I~QTIPqnk~L~qaLidG~reG~------- 73 (86)
T PF02762_consen 1 THPGYMAFLTYDEVKARLQHYRDKPGSYIFRLSCTRLGQWAIGYVTQDGKILQTIPQNKSLYQALIDGSREGF------- 73 (86)
T ss_dssp S-TTBETT--HHHHHHHHGGGTTSTTEEEEEEESSSTTSEEEEEEETTSEEEEE--SSS-HHHHHHHHHHTTS-------
T ss_pred CCCceeEEEeHHHHHHHHHHHhCCcccEEEeeccccccceeEEEEcCCCcEEEecCCCchHHHHHHhccccce-------
Confidence 69999999999 99999 99999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCCCCCCCc
Q psy9201 155 LRSYLYPDGRNVNPEL 170 (264)
Q Consensus 155 l~~yl~Pdgr~~npdl 170 (264)
|+||+|++.|||+
T Consensus 74 ---ylyP~G~~~npdL 86 (86)
T PF02762_consen 74 ---YLYPDGKDDNPDL 86 (86)
T ss_dssp ---S-EETT-SS---T
T ss_pred ---EECCCCCCCCCCC
Confidence 9999999999985
No 3
>KOG0317|consensus
Probab=99.65 E-value=2e-16 Score=146.18 Aligned_cols=51 Identities=29% Similarity=0.651 Sum_probs=46.7
Q ss_pred ccccccccccCceeeCCCCeecHhhHHHHhccCCCcccccccccccccceec
Q psy9201 201 LCKICAENDKDIRIEPCGHLLCTPCLTSWQVSNRSRILFYLFYFFSVKEIPL 252 (264)
Q Consensus 201 lC~ICle~~kdpvitpCGH~FC~~CI~~wl~s~~~~CP~CR~~i~~~~vipl 252 (264)
+|.+|+|...+|..+||||+||+.||.+|.... ..||.||..+...+++-+
T Consensus 241 kC~LCLe~~~~pSaTpCGHiFCWsCI~~w~~ek-~eCPlCR~~~~pskvi~L 291 (293)
T KOG0317|consen 241 KCSLCLENRSNPSATPCGHIFCWSCILEWCSEK-AECPLCREKFQPSKVICL 291 (293)
T ss_pred ceEEEecCCCCCCcCcCcchHHHHHHHHHHccc-cCCCcccccCCCcceeee
Confidence 799999999999999999999999999999754 579999999999888765
No 4
>KOG0823|consensus
Probab=99.48 E-value=1.5e-14 Score=130.29 Aligned_cols=61 Identities=31% Similarity=0.584 Sum_probs=54.6
Q ss_pred CCcccccccccccccCceeeCCCCeecHhhHHHHhcc--CCCcccccccccccccceeccchhh
Q psy9201 196 GSTFQLCKICAENDKDIRIEPCGHLLCTPCLTSWQVS--NRSRILFYLFYFFSVKEIPLWTPTF 257 (264)
Q Consensus 196 ~st~elC~ICle~~kdpvitpCGH~FC~~CI~~wl~s--~~~~CP~CR~~i~~~~vipl~~~~f 257 (264)
++.| .|.||+|..+|||++.|||+||+.|+.+|+.. ....||+|+..++.++++|+|+.+-
T Consensus 45 ~~~F-dCNICLd~akdPVvTlCGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~~~vvPlYGrG~ 107 (230)
T KOG0823|consen 45 GGFF-DCNICLDLAKDPVVTLCGHLFCWPCLYQWLQTRPNSKECPVCKAEVSIDTVVPLYGRGS 107 (230)
T ss_pred CCce-eeeeeccccCCCEEeecccceehHHHHHHHhhcCCCeeCCccccccccceEEeeeccCC
Confidence 4556 49999999999999999999999999999973 4568899999999999999999764
No 5
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=99.28 E-value=1.4e-12 Score=115.31 Aligned_cols=56 Identities=23% Similarity=0.605 Sum_probs=50.3
Q ss_pred ccccccccccCceeeCCCCeecHhhHHHHhcc---------------CCCcccccccccccccceeccchh
Q psy9201 201 LCKICAENDKDIRIEPCGHLLCTPCLTSWQVS---------------NRSRILFYLFYFFSVKEIPLWTPT 256 (264)
Q Consensus 201 lC~ICle~~kdpvitpCGH~FC~~CI~~wl~s---------------~~~~CP~CR~~i~~~~vipl~~~~ 256 (264)
.|+||++..++|++++|||.||+.|+.+|+.. +...||.||..+...+++|+++..
T Consensus 20 ~CpICld~~~dPVvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~~LvPiygrg 90 (193)
T PLN03208 20 DCNICLDQVRDPVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEATLVPIYGRG 90 (193)
T ss_pred CCccCCCcCCCcEEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChhcEEEeeccC
Confidence 59999999999999999999999999999742 235899999999999999999854
No 6
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=99.06 E-value=1.1e-10 Score=81.33 Aligned_cols=45 Identities=31% Similarity=0.633 Sum_probs=39.6
Q ss_pred ccccccccccCceeeCCCCe-ecHhhHHHHhccCCCccccccccccc
Q psy9201 201 LCKICAENDKDIRIEPCGHL-LCTPCLTSWQVSNRSRILFYLFYFFS 246 (264)
Q Consensus 201 lC~ICle~~kdpvitpCGH~-FC~~CI~~wl~s~~~~CP~CR~~i~~ 246 (264)
.|.||++...+++..||||. ||..|+.+|+. +...||+||+++.+
T Consensus 4 ~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~-~~~~CP~Cr~~i~~ 49 (50)
T PF13920_consen 4 ECPICFENPRDVVLLPCGHLCFCEECAERLLK-RKKKCPICRQPIES 49 (50)
T ss_dssp B-TTTSSSBSSEEEETTCEEEEEHHHHHHHHH-TTSBBTTTTBB-SE
T ss_pred CCccCCccCCceEEeCCCChHHHHHHhHHhcc-cCCCCCcCChhhcC
Confidence 69999999999999999999 99999999987 55689999998864
No 7
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=99.04 E-value=1.6e-10 Score=78.73 Aligned_cols=39 Identities=31% Similarity=0.520 Sum_probs=30.7
Q ss_pred cccccccccCceeeCCCCeecHhhHHHHhccCC---Cccccc
Q psy9201 202 CKICAENDKDIRIEPCGHLLCTPCLTSWQVSNR---SRILFY 240 (264)
Q Consensus 202 C~ICle~~kdpvitpCGH~FC~~CI~~wl~s~~---~~CP~C 240 (264)
|+||++.+++|+.++|||.||..|+.+|.+... ..||.|
T Consensus 1 CpiC~~~~~~Pv~l~CGH~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKDPVSLPCGHSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SSEEE-SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhCCccccCCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence 899999999999999999999999999876432 369987
No 8
>KOG0320|consensus
Probab=99.03 E-value=7.7e-11 Score=103.06 Aligned_cols=52 Identities=15% Similarity=0.372 Sum_probs=45.8
Q ss_pred ccccccccccC--ceeeCCCCeecHhhHHHHhccCCCcccccccccccccceecc
Q psy9201 201 LCKICAENDKD--IRIEPCGHLLCTPCLTSWQVSNRSRILFYLFYFFSVKEIPLW 253 (264)
Q Consensus 201 lC~ICle~~kd--pvitpCGH~FC~~CI~~wl~s~~~~CP~CR~~i~~~~vipl~ 253 (264)
.|+||++...+ ++.+.|||+||..||+..+... .+||.||+.+..++++++|
T Consensus 133 ~CPiCl~~~sek~~vsTkCGHvFC~~Cik~alk~~-~~CP~C~kkIt~k~~~rI~ 186 (187)
T KOG0320|consen 133 KCPICLDSVSEKVPVSTKCGHVFCSQCIKDALKNT-NKCPTCRKKITHKQFHRIY 186 (187)
T ss_pred CCCceecchhhccccccccchhHHHHHHHHHHHhC-CCCCCcccccchhhheecc
Confidence 69999997754 6779999999999999999754 5899999999999998876
No 9
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=99.03 E-value=1.4e-10 Score=77.05 Aligned_cols=38 Identities=26% Similarity=0.771 Sum_probs=33.5
Q ss_pred cccccccccCc-eeeCCCCeecHhhHHHHhccCCCccccc
Q psy9201 202 CKICAENDKDI-RIEPCGHLLCTPCLTSWQVSNRSRILFY 240 (264)
Q Consensus 202 C~ICle~~kdp-vitpCGH~FC~~CI~~wl~s~~~~CP~C 240 (264)
|+||++...++ ++++|||.||..|+.+|+.. +.+||.|
T Consensus 1 C~iC~~~~~~~~~~~~CGH~fC~~C~~~~~~~-~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRDPVVVTPCGHSFCKECIEKYLEK-NPKCPVC 39 (39)
T ss_dssp ETTTTSB-SSEEEECTTSEEEEHHHHHHHHHC-TSB-TTT
T ss_pred CCCCCCcccCcCEECCCCCchhHHHHHHHHHC-cCCCcCC
Confidence 89999999999 68999999999999999987 6799998
No 10
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=99.01 E-value=2.3e-10 Score=81.96 Aligned_cols=53 Identities=25% Similarity=0.237 Sum_probs=48.1
Q ss_pred ccccccccccCceeeCCCCeecHhhHHHHhccCCCcccccccccccccceeccc
Q psy9201 201 LCKICAENDKDIRIEPCGHLLCTPCLTSWQVSNRSRILFYLFYFFSVKEIPLWT 254 (264)
Q Consensus 201 lC~ICle~~kdpvitpCGH~FC~~CI~~wl~s~~~~CP~CR~~i~~~~vipl~~ 254 (264)
.|+||.+..++|++++|||+||..|+.+|+.. ..+||.|+.++..+++++...
T Consensus 3 ~Cpi~~~~~~~Pv~~~~G~v~~~~~i~~~~~~-~~~cP~~~~~~~~~~l~~~~~ 55 (63)
T smart00504 3 LCPISLEVMKDPVILPSGQTYERRAIEKWLLS-HGTDPVTGQPLTHEDLIPNLA 55 (63)
T ss_pred CCcCCCCcCCCCEECCCCCEEeHHHHHHHHHH-CCCCCCCcCCCChhhceeCHH
Confidence 59999999999999999999999999999976 568999999998888888643
No 11
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=98.94 E-value=3.5e-10 Score=76.75 Aligned_cols=40 Identities=28% Similarity=0.654 Sum_probs=34.4
Q ss_pred cccccccccc---CceeeCCCCeecHhhHHHHhccCCCcccccc
Q psy9201 201 LCKICAENDK---DIRIEPCGHLLCTPCLTSWQVSNRSRILFYL 241 (264)
Q Consensus 201 lC~ICle~~k---dpvitpCGH~FC~~CI~~wl~s~~~~CP~CR 241 (264)
.|+||++.+. .++.++|||.||.+|+.+|+... .+||.||
T Consensus 2 ~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~~-~~CP~CR 44 (44)
T PF13639_consen 2 ECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKRN-NSCPVCR 44 (44)
T ss_dssp CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHHS-SB-TTTH
T ss_pred CCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHhC-CcCCccC
Confidence 5999999774 57889999999999999999864 5999997
No 12
>KOG0978|consensus
Probab=98.93 E-value=2.1e-10 Score=117.12 Aligned_cols=67 Identities=22% Similarity=0.393 Sum_probs=60.0
Q ss_pred cccHHHHHHHHhhCCcccccccccccccCceeeCCCCeecHhhHHHHhccCCCcccccccccccccceecc
Q psy9201 183 KVTQEQYELYCEMGSTFQLCKICAENDKDIRIEPCGHLLCTPCLTSWQVSNRSRILFYLFYFFSVKEIPLW 253 (264)
Q Consensus 183 ~vtqEq~e~~~e~~st~elC~ICle~~kdpvitpCGH~FC~~CI~~wl~s~~~~CP~CR~~i~~~~vipl~ 253 (264)
.+..|+...|.++. .|++|..+++|.+++.|||+||..|++.....+.++||.|.+.|...|+.++|
T Consensus 631 ~~L~EElk~yK~~L----kCs~Cn~R~Kd~vI~kC~H~FC~~Cvq~r~etRqRKCP~Cn~aFganDv~~I~ 697 (698)
T KOG0978|consen 631 EVLAEELKEYKELL----KCSVCNTRWKDAVITKCGHVFCEECVQTRYETRQRKCPKCNAAFGANDVHRIH 697 (698)
T ss_pred HHHHHHHHHHHhce----eCCCccCchhhHHHHhcchHHHHHHHHHHHHHhcCCCCCCCCCCCcccccccC
Confidence 44577777777765 59999999999999999999999999999888889999999999999999886
No 13
>PHA02929 N1R/p28-like protein; Provisional
Probab=98.85 E-value=1.5e-09 Score=98.97 Aligned_cols=47 Identities=28% Similarity=0.627 Sum_probs=39.0
Q ss_pred cccccccccccC--------ceeeCCCCeecHhhHHHHhccCCCcccccccccccc
Q psy9201 200 QLCKICAENDKD--------IRIEPCGHLLCTPCLTSWQVSNRSRILFYLFYFFSV 247 (264)
Q Consensus 200 elC~ICle~~kd--------pvitpCGH~FC~~CI~~wl~s~~~~CP~CR~~i~~~ 247 (264)
+.|+||++...+ +++++|||.||..|+.+|+.. ..+||+||..+...
T Consensus 175 ~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~-~~tCPlCR~~~~~v 229 (238)
T PHA02929 175 KECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKE-KNTCPVCRTPFISV 229 (238)
T ss_pred CCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhc-CCCCCCCCCEeeEE
Confidence 469999997654 356789999999999999974 56899999987653
No 14
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=98.84 E-value=1.9e-09 Score=71.66 Aligned_cols=39 Identities=36% Similarity=0.813 Sum_probs=35.9
Q ss_pred cccccccccCce-eeCCCCeecHhhHHHHhc-cCCCccccc
Q psy9201 202 CKICAENDKDIR-IEPCGHLLCTPCLTSWQV-SNRSRILFY 240 (264)
Q Consensus 202 C~ICle~~kdpv-itpCGH~FC~~CI~~wl~-s~~~~CP~C 240 (264)
|+||.+...+++ +++|||.||..|+.+|+. .....||.|
T Consensus 1 C~iC~~~~~~~~~~~~C~H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDPVILLPCGHSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSEEEETTTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccCCCEEecCCCcchHHHHHHHHHhcCCccCCcC
Confidence 899999999998 999999999999999998 566789988
No 15
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=98.82 E-value=2.6e-09 Score=69.79 Aligned_cols=44 Identities=27% Similarity=0.709 Sum_probs=36.6
Q ss_pred ccccccccccCceee-CCCCeecHhhHHHHhccCCCccccccccc
Q psy9201 201 LCKICAENDKDIRIE-PCGHLLCTPCLTSWQVSNRSRILFYLFYF 244 (264)
Q Consensus 201 lC~ICle~~kdpvit-pCGH~FC~~CI~~wl~s~~~~CP~CR~~i 244 (264)
.|+||.+...+++.. +|||.||..|+.+|+......||.||..+
T Consensus 1 ~C~iC~~~~~~~~~~~~C~H~~c~~C~~~~~~~~~~~Cp~C~~~~ 45 (45)
T cd00162 1 ECPICLEEFREPVVLLPCGHVFCRSCIDKWLKSGKNTCPLCRTPI 45 (45)
T ss_pred CCCcCchhhhCceEecCCCChhcHHHHHHHHHhCcCCCCCCCCcC
Confidence 399999998666555 49999999999999986567899998753
No 16
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=98.79 E-value=3.2e-09 Score=67.01 Aligned_cols=39 Identities=36% Similarity=0.848 Sum_probs=35.5
Q ss_pred cccccccccCceeeCCCCeecHhhHHHHhccCCCccccc
Q psy9201 202 CKICAENDKDIRIEPCGHLLCTPCLTSWQVSNRSRILFY 240 (264)
Q Consensus 202 C~ICle~~kdpvitpCGH~FC~~CI~~wl~s~~~~CP~C 240 (264)
|+||++...+++.++|||.||..|+..|+......||.|
T Consensus 1 C~iC~~~~~~~~~~~C~H~~c~~C~~~~~~~~~~~CP~C 39 (39)
T smart00184 1 CPICLEELKDPVVLPCGHTFCRSCIRKWLKSGNNTCPIC 39 (39)
T ss_pred CCcCccCCCCcEEecCCChHHHHHHHHHHHhCcCCCCCC
Confidence 789999999999999999999999999998556689987
No 17
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.78 E-value=2.8e-09 Score=98.09 Aligned_cols=50 Identities=28% Similarity=0.582 Sum_probs=44.2
Q ss_pred ccccccccccCceeeCCCCeecHhhHHH-HhccCCCcccccccccccccce
Q psy9201 201 LCKICAENDKDIRIEPCGHLLCTPCLTS-WQVSNRSRILFYLFYFFSVKEI 250 (264)
Q Consensus 201 lC~ICle~~kdpvitpCGH~FC~~CI~~-wl~s~~~~CP~CR~~i~~~~vi 250 (264)
+|.||++...+|..++|||+||+.|+.. |...+...||.||..+..++++
T Consensus 217 kC~lC~e~~~~ps~t~CgHlFC~~Cl~~~~t~~k~~~CplCRak~~pk~vi 267 (271)
T COG5574 217 KCFLCLEEPEVPSCTPCGHLFCLSCLLISWTKKKYEFCPLCRAKVYPKKVI 267 (271)
T ss_pred ceeeeecccCCcccccccchhhHHHHHHHHHhhccccCchhhhhccchhhh
Confidence 6999999999999999999999999998 8776666799999988766653
No 18
>KOG2164|consensus
Probab=98.72 E-value=7.9e-09 Score=102.18 Aligned_cols=61 Identities=23% Similarity=0.411 Sum_probs=50.8
Q ss_pred CCcccccccccccccCceeeCCCCeecHhhHHHHhcc----CCCcccccccccccccceeccchh
Q psy9201 196 GSTFQLCKICAENDKDIRIEPCGHLLCTPCLTSWQVS----NRSRILFYLFYFFSVKEIPLWTPT 256 (264)
Q Consensus 196 ~st~elC~ICle~~kdpvitpCGH~FC~~CI~~wl~s----~~~~CP~CR~~i~~~~vipl~~~~ 256 (264)
.++...|+||++.+.-|+.+.|||+||..||.+++.. ....||+|+..|..+++.|++-.+
T Consensus 183 ~~t~~~CPICL~~~~~p~~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~kdl~pv~~e~ 247 (513)
T KOG2164|consen 183 GSTDMQCPICLEPPSVPVRTNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITLKDLLPVFIED 247 (513)
T ss_pred cCcCCcCCcccCCCCcccccccCceeeHHHHHHHHhhhcccCCccCCchhhhccccceeeeeecc
Confidence 3345579999999999999999999999999986542 346899999999998888877654
No 19
>PHA02926 zinc finger-like protein; Provisional
Probab=98.71 E-value=8.5e-09 Score=93.31 Aligned_cols=53 Identities=21% Similarity=0.480 Sum_probs=40.3
Q ss_pred CcccccccccccccC---------ceeeCCCCeecHhhHHHHhccC-----CCcccccccccccccc
Q psy9201 197 STFQLCKICAENDKD---------IRIEPCGHLLCTPCLTSWQVSN-----RSRILFYLFYFFSVKE 249 (264)
Q Consensus 197 st~elC~ICle~~kd---------pvitpCGH~FC~~CI~~wl~s~-----~~~CP~CR~~i~~~~v 249 (264)
+....|+||+|..-+ .++.+|+|.||..|+.+|...+ .+.||+||..+.....
T Consensus 168 SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~~I~p 234 (242)
T PHA02926 168 SKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFRNITM 234 (242)
T ss_pred cCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceeeeecc
Confidence 334479999997422 4677999999999999998742 3569999998775433
No 20
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=98.71 E-value=1.3e-08 Score=76.48 Aligned_cols=54 Identities=26% Similarity=0.300 Sum_probs=44.8
Q ss_pred ccccccccccCceeeCCCCeecHhhHHHHhccCCCcccccccccccccceeccc
Q psy9201 201 LCKICAENDKDIRIEPCGHLLCTPCLTSWQVSNRSRILFYLFYFFSVKEIPLWT 254 (264)
Q Consensus 201 lC~ICle~~kdpvitpCGH~FC~~CI~~wl~s~~~~CP~CR~~i~~~~vipl~~ 254 (264)
.|+|+.+.+.|||+++|||.|+..||.+|+..+...||+|+.++...+.+|-+.
T Consensus 6 ~CpIt~~lM~dPVi~~~G~tyer~~I~~~l~~~~~~~P~t~~~l~~~~l~pn~~ 59 (73)
T PF04564_consen 6 LCPITGELMRDPVILPSGHTYERSAIERWLEQNGGTDPFTRQPLSESDLIPNRA 59 (73)
T ss_dssp B-TTTSSB-SSEEEETTSEEEEHHHHHHHHCTTSSB-TTT-SB-SGGGSEE-HH
T ss_pred CCcCcCcHhhCceeCCcCCEEcHHHHHHHHHcCCCCCCCCCCcCCcccceECHH
Confidence 699999999999999999999999999999976789999999999988888665
No 21
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.62 E-value=1.7e-08 Score=97.95 Aligned_cols=49 Identities=16% Similarity=0.284 Sum_probs=43.1
Q ss_pred ccccccccccCceeeCCCCeecHhhHHHHhccCCCcccccccccccccce
Q psy9201 201 LCKICAENDKDIRIEPCGHLLCTPCLTSWQVSNRSRILFYLFYFFSVKEI 250 (264)
Q Consensus 201 lC~ICle~~kdpvitpCGH~FC~~CI~~wl~s~~~~CP~CR~~i~~~~vi 250 (264)
.|+||.+.+.+|++++|||.||..|+..|+... ..||.||..+...++.
T Consensus 28 ~C~IC~d~~~~PvitpCgH~FCs~CI~~~l~~~-~~CP~Cr~~~~~~~Lr 76 (397)
T TIGR00599 28 RCHICKDFFDVPVLTSCSHTFCSLCIRRCLSNQ-PKCPLCRAEDQESKLR 76 (397)
T ss_pred CCCcCchhhhCccCCCCCCchhHHHHHHHHhCC-CCCCCCCCccccccCc
Confidence 699999999999999999999999999999754 5899999988765443
No 22
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=98.59 E-value=2.7e-08 Score=67.87 Aligned_cols=40 Identities=28% Similarity=0.710 Sum_probs=34.5
Q ss_pred cccccccc---cCceeeCCCCeecHhhHHHHhccCCCccccccc
Q psy9201 202 CKICAEND---KDIRIEPCGHLLCTPCLTSWQVSNRSRILFYLF 242 (264)
Q Consensus 202 C~ICle~~---kdpvitpCGH~FC~~CI~~wl~s~~~~CP~CR~ 242 (264)
|+||.+.+ ..+++++|||.||..|+.... .....||+||+
T Consensus 2 C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~-~~~~~CP~C~k 44 (44)
T PF14634_consen 2 CNICFEKYSEERRPRLTSCGHIFCEKCLKKLK-GKSVKCPICRK 44 (44)
T ss_pred CcCcCccccCCCCeEEcccCCHHHHHHHHhhc-CCCCCCcCCCC
Confidence 89999988 358899999999999999987 44568999985
No 23
>KOG4628|consensus
Probab=98.53 E-value=3.6e-08 Score=94.25 Aligned_cols=47 Identities=26% Similarity=0.568 Sum_probs=41.4
Q ss_pred cccccccccccC---ceeeCCCCeecHhhHHHHhccCCCccccccccccc
Q psy9201 200 QLCKICAENDKD---IRIEPCGHLLCTPCLTSWQVSNRSRILFYLFYFFS 246 (264)
Q Consensus 200 elC~ICle~~kd---pvitpCGH~FC~~CI~~wl~s~~~~CP~CR~~i~~ 246 (264)
..|.||+|++++ .+++||+|.|+..||+.|+...++.||+|+.++..
T Consensus 230 ~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~r~~CPvCK~di~~ 279 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQTRTFCPVCKRDIRT 279 (348)
T ss_pred ceEEEeecccccCCeeeEecCCCchhhccchhhHhhcCccCCCCCCcCCC
Confidence 379999998874 78999999999999999999776779999987754
No 24
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=98.50 E-value=6.5e-08 Score=93.12 Aligned_cols=50 Identities=22% Similarity=0.448 Sum_probs=40.3
Q ss_pred cccccccccccc-------------cCceeeCCCCeecHhhHHHHhccCCCccccccccccccc
Q psy9201 198 TFQLCKICAEND-------------KDIRIEPCGHLLCTPCLTSWQVSNRSRILFYLFYFFSVK 248 (264)
Q Consensus 198 t~elC~ICle~~-------------kdpvitpCGH~FC~~CI~~wl~s~~~~CP~CR~~i~~~~ 248 (264)
....|.||+|.. +.|..+||||.++..|++.|++ +..+||.||.++-.++
T Consensus 286 ~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~E-RqQTCPICr~p~ifd~ 348 (491)
T COG5243 286 SDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLE-RQQTCPICRRPVIFDQ 348 (491)
T ss_pred CCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHH-hccCCCcccCcccccc
Confidence 344799999972 2368999999999999999998 4569999999954433
No 25
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=98.50 E-value=8.1e-08 Score=72.47 Aligned_cols=40 Identities=33% Similarity=0.720 Sum_probs=32.3
Q ss_pred ccccccccccC-------------ceeeCCCCeecHhhHHHHhccCCCcccccc
Q psy9201 201 LCKICAENDKD-------------IRIEPCGHLLCTPCLTSWQVSNRSRILFYL 241 (264)
Q Consensus 201 lC~ICle~~kd-------------pvitpCGH~FC~~CI~~wl~s~~~~CP~CR 241 (264)
.|.||++.+.+ ++..+|||.|+..||.+|++.+ .+||+||
T Consensus 21 ~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~~-~~CP~CR 73 (73)
T PF12678_consen 21 NCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQN-NTCPLCR 73 (73)
T ss_dssp BETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTTS-SB-TTSS
T ss_pred cccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhcC-CcCCCCC
Confidence 59999997732 3556899999999999999754 4999997
No 26
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=98.46 E-value=7.2e-08 Score=66.41 Aligned_cols=36 Identities=33% Similarity=0.770 Sum_probs=22.2
Q ss_pred cccccccccC----ceeeCCCCeecHhhHHHHhccC---CCccc
Q psy9201 202 CKICAENDKD----IRIEPCGHLLCTPCLTSWQVSN---RSRIL 238 (264)
Q Consensus 202 C~ICle~~kd----pvitpCGH~FC~~CI~~wl~s~---~~~CP 238 (264)
|+||.| +.+ |++++|||+||..|++++...+ .-+||
T Consensus 1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~l~~~~~~~~~kCP 43 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQKLSKKSDRNRFKCP 43 (43)
T ss_dssp -TTT-----TTSS-EEE-SSS-EEEHHHHHHHHHH-S-S-B--T
T ss_pred CCcccc-ccCCCCCCEEEeCccHHHHHHHHHHHhcCCCCeeeCc
Confidence 899999 777 9999999999999999998743 34676
No 27
>KOG4172|consensus
Probab=98.40 E-value=4.4e-08 Score=71.20 Aligned_cols=47 Identities=21% Similarity=0.394 Sum_probs=40.6
Q ss_pred cccccccccccCceeeCCCCe-ecHhhHHHHhccCCCccccccccccc
Q psy9201 200 QLCKICAENDKDIRIEPCGHL-LCTPCLTSWQVSNRSRILFYLFYFFS 246 (264)
Q Consensus 200 elC~ICle~~kdpvitpCGH~-FC~~CI~~wl~s~~~~CP~CR~~i~~ 246 (264)
+.|.||.|.+-|.|+..|||. +|..|-.+..+..+..||.||.++++
T Consensus 8 dECTICye~pvdsVlYtCGHMCmCy~Cg~rl~~~~~g~CPiCRapi~d 55 (62)
T KOG4172|consen 8 DECTICYEHPVDSVLYTCGHMCMCYACGLRLKKALHGCCPICRAPIKD 55 (62)
T ss_pred cceeeeccCcchHHHHHcchHHhHHHHHHHHHHccCCcCcchhhHHHH
Confidence 469999999999999999998 89999777555456789999998865
No 28
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.34 E-value=2.3e-07 Score=87.41 Aligned_cols=46 Identities=22% Similarity=0.496 Sum_probs=40.0
Q ss_pred ccccccccccC---ceeeCCCCeecHhhHHHHhccCCCccccccccccc
Q psy9201 201 LCKICAENDKD---IRIEPCGHLLCTPCLTSWQVSNRSRILFYLFYFFS 246 (264)
Q Consensus 201 lC~ICle~~kd---pvitpCGH~FC~~CI~~wl~s~~~~CP~CR~~i~~ 246 (264)
.|.||++++.+ .+++||.|+|+..|+.+|+..-+.+||.||.+++.
T Consensus 325 eCaICms~fiK~d~~~vlPC~H~FH~~Cv~kW~~~y~~~CPvCrt~iPP 373 (374)
T COG5540 325 ECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLGYSNKCPVCRTAIPP 373 (374)
T ss_pred eEEEEhhhhcccceEEEeccCceechhHHHHHHhhhcccCCccCCCCCC
Confidence 59999998753 67899999999999999998656789999998763
No 29
>KOG0287|consensus
Probab=98.32 E-value=1.7e-07 Score=89.47 Aligned_cols=46 Identities=22% Similarity=0.423 Sum_probs=41.6
Q ss_pred ccccccccccCceeeCCCCeecHhhHHHHhccCCCcccccccccccc
Q psy9201 201 LCKICAENDKDIRIEPCGHLLCTPCLTSWQVSNRSRILFYLFYFFSV 247 (264)
Q Consensus 201 lC~ICle~~kdpvitpCGH~FC~~CI~~wl~s~~~~CP~CR~~i~~~ 247 (264)
.|.||.|.++.|+++||||.||.-||...+.. ++.||.|+.++...
T Consensus 25 RC~IC~eyf~ip~itpCsHtfCSlCIR~~L~~-~p~CP~C~~~~~Es 70 (442)
T KOG0287|consen 25 RCGICFEYFNIPMITPCSHTFCSLCIRKFLSY-KPQCPTCCVTVTES 70 (442)
T ss_pred HHhHHHHHhcCceeccccchHHHHHHHHHhcc-CCCCCceecccchh
Confidence 59999999999999999999999999999974 56899999887653
No 30
>KOG2177|consensus
Probab=98.27 E-value=3.1e-07 Score=78.84 Aligned_cols=41 Identities=29% Similarity=0.505 Sum_probs=37.5
Q ss_pred ccccccccccCceeeCCCCeecHhhHHHHhccCCCccccccc
Q psy9201 201 LCKICAENDKDIRIEPCGHLLCTPCLTSWQVSNRSRILFYLF 242 (264)
Q Consensus 201 lC~ICle~~kdpvitpCGH~FC~~CI~~wl~s~~~~CP~CR~ 242 (264)
.|+||++.+++|++++|||.||..|+..+.. ..-.||.||.
T Consensus 15 ~C~iC~~~~~~p~~l~C~H~~c~~C~~~~~~-~~~~Cp~cr~ 55 (386)
T KOG2177|consen 15 TCPICLEYFREPVLLPCGHNFCRACLTRSWE-GPLSCPVCRP 55 (386)
T ss_pred cChhhHHHhhcCccccccchHhHHHHHHhcC-CCcCCcccCC
Confidence 6999999999999999999999999999876 5568999993
No 31
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=98.25 E-value=3.7e-07 Score=85.71 Aligned_cols=46 Identities=17% Similarity=0.253 Sum_probs=41.1
Q ss_pred cccccccccccCceeeCCCCeecHhhHHHHhccCCCccccccccccc
Q psy9201 200 QLCKICAENDKDIRIEPCGHLLCTPCLTSWQVSNRSRILFYLFYFFS 246 (264)
Q Consensus 200 elC~ICle~~kdpvitpCGH~FC~~CI~~wl~s~~~~CP~CR~~i~~ 246 (264)
..|.||.+.++.|++++|||.||.-||...+.. .+.||.||.+...
T Consensus 26 lrC~IC~~~i~ip~~TtCgHtFCslCIR~hL~~-qp~CP~Cr~~~~e 71 (391)
T COG5432 26 LRCRICDCRISIPCETTCGHTFCSLCIRRHLGT-QPFCPVCREDPCE 71 (391)
T ss_pred HHhhhhhheeecceecccccchhHHHHHHHhcC-CCCCccccccHHh
Confidence 369999999999999999999999999999974 5689999987654
No 32
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.20 E-value=1e-06 Score=83.24 Aligned_cols=51 Identities=18% Similarity=0.285 Sum_probs=38.9
Q ss_pred cccccccc---ccCc--eeeCCCCeecHhhHHHHhccCCCccccccccccccccee
Q psy9201 201 LCKICAEN---DKDI--RIEPCGHLLCTPCLTSWQVSNRSRILFYLFYFFSVKEIP 251 (264)
Q Consensus 201 lC~ICle~---~kdp--vitpCGH~FC~~CI~~wl~s~~~~CP~CR~~i~~~~vip 251 (264)
.|++|... ..+. .+.+|||.||..|+...+..+...||.|+..+...+..+
T Consensus 5 ~CP~Ck~~~y~np~~kl~i~~CGH~~C~sCv~~l~~~~~~~CP~C~~~lrk~~fr~ 60 (309)
T TIGR00570 5 GCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGSGSCPECDTPLRKNNFRV 60 (309)
T ss_pred CCCcCCCCCccCcccccccCCCCCcccHHHHHHHhcCCCCCCCCCCCccchhhccc
Confidence 69999994 2222 233899999999999966656668999999988776443
No 33
>KOG0802|consensus
Probab=98.18 E-value=5.3e-07 Score=90.37 Aligned_cols=47 Identities=28% Similarity=0.603 Sum_probs=40.7
Q ss_pred cccccccccccC-----ceeeCCCCeecHhhHHHHhccCCCcccccccccccc
Q psy9201 200 QLCKICAENDKD-----IRIEPCGHLLCTPCLTSWQVSNRSRILFYLFYFFSV 247 (264)
Q Consensus 200 elC~ICle~~kd-----pvitpCGH~FC~~CI~~wl~s~~~~CP~CR~~i~~~ 247 (264)
+.|.||.|.... +..++|||.||..|+.+|++. ..+||+||..+...
T Consensus 292 ~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~CL~~W~er-~qtCP~CR~~~~~~ 343 (543)
T KOG0802|consen 292 ELCIICLEELHSGHNITPKRLPCGHIFHDSCLRSWFER-QQTCPTCRTVLYDY 343 (543)
T ss_pred CeeeeechhhccccccccceeecccchHHHHHHHHHHH-hCcCCcchhhhhcc
Confidence 379999998887 899999999999999999985 56999999955443
No 34
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=98.13 E-value=1.4e-06 Score=68.30 Aligned_cols=35 Identities=11% Similarity=0.292 Sum_probs=28.9
Q ss_pred ceeeCCCCeecHhhHHHHhcc--CCCccccccccccc
Q psy9201 212 IRIEPCGHLLCTPCLTSWQVS--NRSRILFYLFYFFS 246 (264)
Q Consensus 212 pvitpCGH~FC~~CI~~wl~s--~~~~CP~CR~~i~~ 246 (264)
.+.-.|+|.|+..||.+|+.+ .+..||+||.+...
T Consensus 47 lv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~~ 83 (85)
T PF12861_consen 47 LVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPWKF 83 (85)
T ss_pred eeeccCccHHHHHHHHHHHccccCCCCCCCcCCeeee
Confidence 345579999999999999985 35799999998654
No 35
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=98.06 E-value=1.4e-06 Score=65.09 Aligned_cols=45 Identities=20% Similarity=0.398 Sum_probs=24.7
Q ss_pred ccccccccccCce-eeCCCCeecHhhHHHHhccCCCccccccccccccc
Q psy9201 201 LCKICAENDKDIR-IEPCGHLLCTPCLTSWQVSNRSRILFYLFYFFSVK 248 (264)
Q Consensus 201 lC~ICle~~kdpv-itpCGH~FC~~CI~~wl~s~~~~CP~CR~~i~~~~ 248 (264)
.|++|.+.+++|+ ...|.|.||+.|+.+-+.+ .||+|+.+...+|
T Consensus 9 rCs~C~~~l~~pv~l~~CeH~fCs~Ci~~~~~~---~CPvC~~Paw~qD 54 (65)
T PF14835_consen 9 RCSICFDILKEPVCLGGCEHIFCSSCIRDCIGS---ECPVCHTPAWIQD 54 (65)
T ss_dssp S-SSS-S--SS-B---SSS--B-TTTGGGGTTT---B-SSS--B-S-SS
T ss_pred CCcHHHHHhcCCceeccCccHHHHHHhHHhcCC---CCCCcCChHHHHH
Confidence 5999999999997 5789999999999886642 5999998865544
No 36
>KOG4265|consensus
Probab=97.87 E-value=5.8e-06 Score=79.08 Aligned_cols=46 Identities=26% Similarity=0.535 Sum_probs=40.0
Q ss_pred ccccccccccCceeeCCCCe-ecHhhHHHHhccCCCcccccccccccc
Q psy9201 201 LCKICAENDKDIRIEPCGHL-LCTPCLTSWQVSNRSRILFYLFYFFSV 247 (264)
Q Consensus 201 lC~ICle~~kdpvitpCGH~-FC~~CI~~wl~s~~~~CP~CR~~i~~~ 247 (264)
.|.||+...+|.+++||-|. +|..|.+...- ....||+||.++...
T Consensus 292 eCVIClse~rdt~vLPCRHLCLCs~Ca~~Lr~-q~n~CPICRqpi~~l 338 (349)
T KOG4265|consen 292 ECVICLSESRDTVVLPCRHLCLCSGCAKSLRY-QTNNCPICRQPIEEL 338 (349)
T ss_pred eeEEEecCCcceEEecchhhehhHhHHHHHHH-hhcCCCccccchHhh
Confidence 59999999999999999998 79999998763 345799999988653
No 37
>KOG0824|consensus
Probab=97.85 E-value=5.8e-06 Score=77.79 Aligned_cols=47 Identities=19% Similarity=0.260 Sum_probs=42.9
Q ss_pred ccccccccccCceeeCCCCeecHhhHHHHhccCCCcccccccccccc
Q psy9201 201 LCKICAENDKDIRIEPCGHLLCTPCLTSWQVSNRSRILFYLFYFFSV 247 (264)
Q Consensus 201 lC~ICle~~kdpvitpCGH~FC~~CI~~wl~s~~~~CP~CR~~i~~~ 247 (264)
.|.||+....-|+.++|+|.||.-||+.-...++++|++||.+|...
T Consensus 9 eC~IC~nt~n~Pv~l~C~HkFCyiCiKGsy~ndk~~CavCR~pids~ 55 (324)
T KOG0824|consen 9 ECLICYNTGNCPVNLYCFHKFCYICIKGSYKNDKKTCAVCRFPIDST 55 (324)
T ss_pred cceeeeccCCcCccccccchhhhhhhcchhhcCCCCCceecCCCCcc
Confidence 59999999999999999999999999987767888999999999764
No 38
>KOG0311|consensus
Probab=97.82 E-value=2.5e-06 Score=81.69 Aligned_cols=47 Identities=21% Similarity=0.283 Sum_probs=41.0
Q ss_pred ccccccccccCceee-CCCCeecHhhHHHHhccCCCcccccccccccc
Q psy9201 201 LCKICAENDKDIRIE-PCGHLLCTPCLTSWQVSNRSRILFYLFYFFSV 247 (264)
Q Consensus 201 lC~ICle~~kdpvit-pCGH~FC~~CI~~wl~s~~~~CP~CR~~i~~~ 247 (264)
.|+||++..+..+.+ .|+|.||..||...+......||.||+.+...
T Consensus 45 ~c~icl~llk~tmttkeClhrfc~~ci~~a~r~gn~ecptcRk~l~Sk 92 (381)
T KOG0311|consen 45 ICPICLSLLKKTMTTKECLHRFCFDCIWKALRSGNNECPTCRKKLVSK 92 (381)
T ss_pred ccHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcCCCCchHHhhcccc
Confidence 699999999887666 59999999999999888888999999987543
No 39
>KOG1039|consensus
Probab=97.65 E-value=1.9e-05 Score=75.78 Aligned_cols=65 Identities=23% Similarity=0.464 Sum_probs=48.1
Q ss_pred ccccccccccccCce-----e---eCCCCeecHhhHHHHhccC------CCcccccccccccccceeccchhhhhhhcc
Q psy9201 199 FQLCKICAENDKDIR-----I---EPCGHLLCTPCLTSWQVSN------RSRILFYLFYFFSVKEIPLWTPTFVAKIRL 263 (264)
Q Consensus 199 ~elC~ICle~~kdpv-----i---tpCGH~FC~~CI~~wl~s~------~~~CP~CR~~i~~~~vipl~~~~f~~~~~~ 263 (264)
...|.||++...+.. . .+|-|.||..|+..|.... .+.||+||........-..|..++-+|.+|
T Consensus 161 ~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~~v~pS~~Wv~t~~~k~~l 239 (344)
T KOG1039|consen 161 EKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPSSFVNPSSFWVETKEEKQKL 239 (344)
T ss_pred cccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCccccccccceeeeeccccccc
Confidence 346999999776654 2 6799999999999998422 479999999877654444477766665543
No 40
>KOG1002|consensus
Probab=97.59 E-value=4.3e-05 Score=76.80 Aligned_cols=211 Identities=17% Similarity=0.164 Sum_probs=114.6
Q ss_pred ccccccchhhhHHHhhhhhhhheehheeccchHHHHHH-HhccccccCCCCCccccCCCCCCCCCcccc--------cce
Q psy9201 9 LLSIAPLAATTFTLLFSLSFMLFIIFLFSWGLPEFARF-QLGLYLPFGDPPLHITLNQPEWGRESEQHA--------IGK 79 (264)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~ 79 (264)
-+|++||+--.=- ||||.=.|=|= -.+||-..+. --.+.|.|+|--- -++-+..--+|- -.-
T Consensus 349 ~LSGTPLQNrigE-lySLiRFL~i~---Pfsyyfc~~cdc~~~~~~ftdr~~-----c~~c~h~~m~h~~~~n~~mlk~I 419 (791)
T KOG1002|consen 349 CLSGTPLQNRIGE-LYSLIRFLNIN---PFSYYFCTKCDCASLDWKFTDRMH-----CDHCSHNIMQHTCFFNHFMLKPI 419 (791)
T ss_pred hccCCcchhhHHH-HHHHHHHHccC---cchhhhhhhccccccceeeccccc-----CCcccchhhhhhhhhcccccccc
Confidence 4788898875433 45554322221 0123322222 1357889988322 233334444442 233
Q ss_pred eEEeeccchhHHHHHHHHHHHHhhhhhhhhhhcccccccccCCcceeecc-----CCCchHHHHHhccccccchhhHH--
Q psy9201 80 MVTLVTHLDANNFLTSLQAQLYYVFRLSCTRLGQWAIGYVTADGDILQTI-----PQNKSLCQALLDGYREGLSGLIY-- 152 (264)
Q Consensus 80 ~~l~v~~~~~~a~~tyv~~~ls~~f~~s~~rlgqw~ig~vs~d~~~~qtI-----p~nksl~qALLdg~Reg~s~i~~-- 152 (264)
++-|+-.||-.||. -++..|.-|- +.+|+||.=+-=-+. -+|+.-= -..+++++.|....+.-++..+-
T Consensus 420 qkfG~eGpGk~af~-~~h~llk~Im-lrrTkl~RAdDLgLP--PRiv~vRrD~fn~eE~D~YeSLY~dSkrkfntyieeG 495 (791)
T KOG1002|consen 420 QKFGVEGPGKEAFN-NIHTLLKNIM-LRRTKLERADDLGLP--PRIVTVRRDFFNEEEKDLYESLYKDSKRKFNTYIEEG 495 (791)
T ss_pred hhhcccCchHHHHH-HHHHHHHHHH-HHHhhcccccccCCC--ccceeeehhhhhhHHHHHHHHHHHhhHHhhhhHHhhh
Confidence 56789999999998 4555555554 667888743100000 0111000 01266777777666655554441
Q ss_pred ------H----HHHHhcCCCCCCCCCCccccccCCCcccccccHHHHHHHHhhCCcccccccccccccCceeeCCCCeec
Q psy9201 153 ------S----ILRSYLYPDGRNVNPELSWEFISTPEDHIKVTQEQYELYCEMGSTFQLCKICAENDKDIRIEPCGHLLC 222 (264)
Q Consensus 153 ------~----ll~~yl~Pdgr~~npdls~l~~~~~e~~i~vtqEq~e~~~e~~st~elC~ICle~~kdpvitpCGH~FC 222 (264)
+ ++.+.. .-.++||+.-.. ....+. -| +.....|.+|.+...|++.+.|.|.||
T Consensus 496 vvlNNYAnIF~LitRmR---Q~aDHP~LVl~S---~~~n~~--~e--------nk~~~~C~lc~d~aed~i~s~ChH~FC 559 (791)
T KOG1002|consen 496 VVLNNYANIFTLITRMR---QAADHPDLVLYS---ANANLP--DE--------NKGEVECGLCHDPAEDYIESSCHHKFC 559 (791)
T ss_pred hhhhhHHHHHHHHHHHH---HhccCcceeeeh---hhcCCC--cc--------ccCceeecccCChhhhhHhhhhhHHHH
Confidence 1 122111 112445543221 110100 01 111225999999999999999999999
Q ss_pred HhhHHHHhc----cCCCccccccccccccc
Q psy9201 223 TPCLTSWQV----SNRSRILFYLFYFFSVK 248 (264)
Q Consensus 223 ~~CI~~wl~----s~~~~CP~CR~~i~~~~ 248 (264)
..|+.+++. +..-+||.|...++-+.
T Consensus 560 rlCi~eyv~~f~~~~nvtCP~C~i~LsiDl 589 (791)
T KOG1002|consen 560 RLCIKEYVESFMENNNVTCPVCHIGLSIDL 589 (791)
T ss_pred HHHHHHHHHhhhcccCCCCccccccccccc
Confidence 999988765 34579999988776543
No 41
>KOG2879|consensus
Probab=97.53 E-value=0.00016 Score=67.60 Aligned_cols=47 Identities=19% Similarity=0.369 Sum_probs=37.6
Q ss_pred ccccccccccCce-eeCCCCeecHhhHHHHhcc-CCCcccccccccccc
Q psy9201 201 LCKICAENDKDIR-IEPCGHLLCTPCLTSWQVS-NRSRILFYLFYFFSV 247 (264)
Q Consensus 201 lC~ICle~~kdpv-itpCGH~FC~~CI~~wl~s-~~~~CP~CR~~i~~~ 247 (264)
.|++|-+.+..|- +.+|||++|.-|+..-... ...+||.|.+++..-
T Consensus 241 ~C~~Cg~~PtiP~~~~~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~~l 289 (298)
T KOG2879|consen 241 ECPVCGEPPTIPHVIGKCGHIYCYYCIATSRLWDASFTCPLCGENVEPL 289 (298)
T ss_pred eeeccCCCCCCCeeeccccceeehhhhhhhhcchhhcccCccCCCCcch
Confidence 5999999999875 4569999999999875543 345899999887643
No 42
>KOG0297|consensus
Probab=97.48 E-value=4.5e-05 Score=74.04 Aligned_cols=50 Identities=26% Similarity=0.507 Sum_probs=44.4
Q ss_pred ccccccccccCceee-CCCCeecHhhHHHHhccCCCccccccccccccccee
Q psy9201 201 LCKICAENDKDIRIE-PCGHLLCTPCLTSWQVSNRSRILFYLFYFFSVKEIP 251 (264)
Q Consensus 201 lC~ICle~~kdpvit-pCGH~FC~~CI~~wl~s~~~~CP~CR~~i~~~~vip 251 (264)
.|++|....++|+.+ .|||.||..|+.+|+.. ...||.|+..+...+.++
T Consensus 23 ~C~~C~~vl~~p~~~~~cgh~fC~~C~~~~~~~-~~~cp~~~~~~~~~~~~~ 73 (391)
T KOG0297|consen 23 LCPICMSVLRDPVQTTTCGHRFCAGCLLESLSN-HQKCPVCRQELTQAEELP 73 (391)
T ss_pred cCccccccccCCCCCCCCCCcccccccchhhcc-CcCCcccccccchhhccC
Confidence 699999999999995 99999999999999986 679999998877666555
No 43
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=97.39 E-value=4.9e-05 Score=68.36 Aligned_cols=43 Identities=21% Similarity=0.388 Sum_probs=37.0
Q ss_pred ccccccccccCceeeCCCCeecHhhHHHHhccCCCccccccccc
Q psy9201 201 LCKICAENDKDIRIEPCGHLLCTPCLTSWQVSNRSRILFYLFYF 244 (264)
Q Consensus 201 lC~ICle~~kdpvitpCGH~FC~~CI~~wl~s~~~~CP~CR~~i 244 (264)
.|.||.++.+.|+++.|||.||..|...-.. ....|-.|.+..
T Consensus 198 ~C~iCKkdy~spvvt~CGH~FC~~Cai~~y~-kg~~C~~Cgk~t 240 (259)
T COG5152 198 LCGICKKDYESPVVTECGHSFCSLCAIRKYQ-KGDECGVCGKAT 240 (259)
T ss_pred eehhchhhccchhhhhcchhHHHHHHHHHhc-cCCcceecchhh
Confidence 6999999999999999999999999876554 346899998754
No 44
>KOG3039|consensus
Probab=97.39 E-value=0.00012 Score=67.60 Aligned_cols=53 Identities=13% Similarity=0.179 Sum_probs=47.8
Q ss_pred ccccccccccC----ceeeCCCCeecHhhHHHHhccCCCcccccccccccccceeccc
Q psy9201 201 LCKICAENDKD----IRIEPCGHLLCTPCLTSWQVSNRSRILFYLFYFFSVKEIPLWT 254 (264)
Q Consensus 201 lC~ICle~~kd----pvitpCGH~FC~~CI~~wl~s~~~~CP~CR~~i~~~~vipl~~ 254 (264)
+|++|.+.+.+ .++.||||++|..|+++.+..++ .||+|..++++.++|++..
T Consensus 223 iCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~D~-v~pv~d~plkdrdiI~Lqr 279 (303)
T KOG3039|consen 223 ICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRKDM-VDPVTDKPLKDRDIIGLQR 279 (303)
T ss_pred ecccchhhhcCccceEEeccCCcEeeHHHHHHhccccc-cccCCCCcCcccceEeeec
Confidence 79999998887 46789999999999999998665 8999999999999999875
No 45
>KOG4159|consensus
Probab=97.38 E-value=8e-05 Score=72.75 Aligned_cols=48 Identities=23% Similarity=0.454 Sum_probs=41.7
Q ss_pred CcccccccccccccCceeeCCCCeecHhhHHHHhccCCCccccccccccc
Q psy9201 197 STFQLCKICAENDKDIRIEPCGHLLCTPCLTSWQVSNRSRILFYLFYFFS 246 (264)
Q Consensus 197 st~elC~ICle~~kdpvitpCGH~FC~~CI~~wl~s~~~~CP~CR~~i~~ 246 (264)
+.+ .|.||.+.+-+|+.+||||.||..|+.+.+. ....||.||..+..
T Consensus 83 sef-~c~vc~~~l~~pv~tpcghs~c~~Cl~r~ld-~~~~cp~Cr~~l~e 130 (398)
T KOG4159|consen 83 SEF-ECCVCSRALYPPVVTPCGHSFCLECLDRSLD-QETECPLCRDELVE 130 (398)
T ss_pred chh-hhhhhHhhcCCCccccccccccHHHHHHHhc-cCCCCccccccccc
Confidence 445 5999999999999999999999999999776 45689999988764
No 46
>KOG4275|consensus
Probab=97.20 E-value=7.2e-05 Score=70.49 Aligned_cols=43 Identities=28% Similarity=0.613 Sum_probs=36.2
Q ss_pred ccccccccccccCceeeCCCCe-ecHhhHHHHhccCCCccccccccccc
Q psy9201 199 FQLCKICAENDKDIRIEPCGHL-LCTPCLTSWQVSNRSRILFYLFYFFS 246 (264)
Q Consensus 199 ~elC~ICle~~kdpvitpCGH~-FC~~CI~~wl~s~~~~CP~CR~~i~~ 246 (264)
..+|.||++.+.|-+.++|||. -|..|- +++..||+||..+.+
T Consensus 300 ~~LC~ICmDaP~DCvfLeCGHmVtCt~CG-----krm~eCPICRqyi~r 343 (350)
T KOG4275|consen 300 RRLCAICMDAPRDCVFLECGHMVTCTKCG-----KRMNECPICRQYIVR 343 (350)
T ss_pred HHHHHHHhcCCcceEEeecCcEEeehhhc-----cccccCchHHHHHHH
Confidence 4479999999999999999996 588885 345589999998765
No 47
>KOG0828|consensus
Probab=97.12 E-value=0.00016 Score=72.24 Aligned_cols=46 Identities=20% Similarity=0.416 Sum_probs=37.2
Q ss_pred cccccccccc-----------------CceeeCCCCeecHhhHHHHhccCCCccccccccccc
Q psy9201 201 LCKICAENDK-----------------DIRIEPCGHLLCTPCLTSWQVSNRSRILFYLFYFFS 246 (264)
Q Consensus 201 lC~ICle~~k-----------------dpvitpCGH~FC~~CI~~wl~s~~~~CP~CR~~i~~ 246 (264)
.|.||+.... +-..+||.|+|+..|+++|+...+-.||.||.+++.
T Consensus 573 dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~HifH~~CL~~WMd~ykl~CPvCR~pLPp 635 (636)
T KOG0828|consen 573 DCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIFHRQCLLQWMDTYKLICPVCRCPLPP 635 (636)
T ss_pred cceEeccccceeeccCcchhhhhhhhccccccchHHHHHHHHHHHHHhhhcccCCccCCCCCC
Confidence 4999998432 134679999999999999998666689999998753
No 48
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=97.10 E-value=0.00033 Score=49.27 Aligned_cols=41 Identities=22% Similarity=0.656 Sum_probs=33.4
Q ss_pred ccccccc--cccCceeeCCC-----CeecHhhHHHHhcc-CCCcccccc
Q psy9201 201 LCKICAE--NDKDIRIEPCG-----HLLCTPCLTSWQVS-NRSRILFYL 241 (264)
Q Consensus 201 lC~ICle--~~kdpvitpCG-----H~FC~~CI~~wl~s-~~~~CP~CR 241 (264)
.|.||++ ...++.+.||. |.++..|+.+|+.. +..+||+|+
T Consensus 1 ~CrIC~~~~~~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHDEGDEGDPLVSPCRCKGSLKYVHQECLERWINESGNKTCEICK 49 (49)
T ss_pred CccCCCCCCCCCCeeEeccccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence 3889997 55678899996 78999999999974 356899995
No 49
>KOG4692|consensus
Probab=97.10 E-value=0.00023 Score=68.81 Aligned_cols=49 Identities=27% Similarity=0.522 Sum_probs=42.1
Q ss_pred CcccccccccccccCceeeCCCCeecHhhHHHHhccCCCccccccccccc
Q psy9201 197 STFQLCKICAENDKDIRIEPCGHLLCTPCLTSWQVSNRSRILFYLFYFFS 246 (264)
Q Consensus 197 st~elC~ICle~~kdpvitpCGH~FC~~CI~~wl~s~~~~CP~CR~~i~~ 246 (264)
++..+|+||...+.+.+..||||.-|..||.+.+-+. +.|=+|+..+..
T Consensus 420 sEd~lCpICyA~pi~Avf~PC~H~SC~~CI~qHlmN~-k~CFfCktTv~~ 468 (489)
T KOG4692|consen 420 SEDNLCPICYAGPINAVFAPCSHRSCYGCITQHLMNC-KRCFFCKTTVID 468 (489)
T ss_pred cccccCcceecccchhhccCCCCchHHHHHHHHHhcC-CeeeEecceeee
Confidence 4455799999999999999999999999999988644 579999987763
No 50
>KOG0827|consensus
Probab=97.08 E-value=0.00028 Score=68.73 Aligned_cols=50 Identities=24% Similarity=0.547 Sum_probs=35.8
Q ss_pred ccccccccccC---c-eeeCCCCeecHhhHHHHhcc--CCCcccccccccccccce
Q psy9201 201 LCKICAENDKD---I-RIEPCGHLLCTPCLTSWQVS--NRSRILFYLFYFFSVKEI 250 (264)
Q Consensus 201 lC~ICle~~kd---p-vitpCGH~FC~~CI~~wl~s--~~~~CP~CR~~i~~~~vi 250 (264)
+|.||.+-... . .+-.|||+|+..|+.+|... ..+.||.|+-.+....++
T Consensus 6 ~C~Ic~d~~p~~~~l~~i~~cGhifh~~cl~qwfe~~Ps~R~cpic~ik~~~r~~~ 61 (465)
T KOG0827|consen 6 ECHICIDGRPNDHELGPIGTCGHIFHTTCLTQWFEGDPSNRGCPICQIKLQERHVA 61 (465)
T ss_pred eeeEeccCCccccccccccchhhHHHHHHHHHHHccCCccCCCCceeecccceeee
Confidence 69999543222 2 24469999999999999984 236899999555555555
No 51
>KOG1571|consensus
Probab=97.04 E-value=0.0003 Score=67.59 Aligned_cols=45 Identities=22% Similarity=0.452 Sum_probs=35.9
Q ss_pred cccccccccccccCceeeCCCCeecHhhHHHHhccCCCccccccccccc
Q psy9201 198 TFQLCKICAENDKDIRIEPCGHLLCTPCLTSWQVSNRSRILFYLFYFFS 246 (264)
Q Consensus 198 t~elC~ICle~~kdpvitpCGH~FC~~CI~~wl~s~~~~CP~CR~~i~~ 246 (264)
....|.||.+.+++.+..||||+.| |...... -++||.||..+..
T Consensus 304 ~p~lcVVcl~e~~~~~fvpcGh~cc--ct~cs~~--l~~CPvCR~rI~~ 348 (355)
T KOG1571|consen 304 QPDLCVVCLDEPKSAVFVPCGHVCC--CTLCSKH--LPQCPVCRQRIRL 348 (355)
T ss_pred CCCceEEecCCccceeeecCCcEEE--chHHHhh--CCCCchhHHHHHH
Confidence 3447999999999999999999977 7665543 3469999988754
No 52
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=97.04 E-value=0.00025 Score=75.26 Aligned_cols=50 Identities=26% Similarity=0.343 Sum_probs=40.4
Q ss_pred CCccccccccccccc-------CceeeCCCCeecHhhHHHHhcc-CCCcccccccccc
Q psy9201 196 GSTFQLCKICAENDK-------DIRIEPCGHLLCTPCLTSWQVS-NRSRILFYLFYFF 245 (264)
Q Consensus 196 ~st~elC~ICle~~k-------dpvitpCGH~FC~~CI~~wl~s-~~~~CP~CR~~i~ 245 (264)
.+.++.|+||..... .-+.-.|.|-|+.+|+.+|..+ +..+||.||.+++
T Consensus 1466 fsG~eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~Ss~~s~CPlCRseit 1523 (1525)
T COG5219 1466 FSGHEECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCRSEIT 1523 (1525)
T ss_pred cCCcchhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHhcCCCCCCccccccc
Confidence 466778999998654 2456679999999999999985 4569999998775
No 53
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=97.02 E-value=0.00044 Score=50.21 Aligned_cols=39 Identities=18% Similarity=0.284 Sum_probs=29.0
Q ss_pred ccccccccccCceee-CCCCeecHhhHHHHhc-cCCCcccc
Q psy9201 201 LCKICAENDKDIRIE-PCGHLLCTPCLTSWQV-SNRSRILF 239 (264)
Q Consensus 201 lC~ICle~~kdpvit-pCGH~FC~~CI~~wl~-s~~~~CP~ 239 (264)
.|+|....+++|+.. .|||.|....|.+++. .+...||.
T Consensus 13 ~CPiT~~~~~~PV~s~~C~H~fek~aI~~~i~~~~~~~CPv 53 (57)
T PF11789_consen 13 KCPITLQPFEDPVKSKKCGHTFEKEAILQYIQRNGSKRCPV 53 (57)
T ss_dssp B-TTTSSB-SSEEEESSS--EEEHHHHHHHCTTTS-EE-SC
T ss_pred CCCCcCChhhCCcCcCCCCCeecHHHHHHHHHhcCCCCCCC
Confidence 699999999999875 8999999999999994 34568998
No 54
>PF04641 Rtf2: Rtf2 RING-finger
Probab=96.92 E-value=0.00081 Score=61.74 Aligned_cols=54 Identities=19% Similarity=0.386 Sum_probs=45.2
Q ss_pred ccccccccccC----ceeeCCCCeecHhhHHHHhccCCCcccccccccccccceeccchh
Q psy9201 201 LCKICAENDKD----IRIEPCGHLLCTPCLTSWQVSNRSRILFYLFYFFSVKEIPLWTPT 256 (264)
Q Consensus 201 lC~ICle~~kd----pvitpCGH~FC~~CI~~wl~s~~~~CP~CR~~i~~~~vipl~~~~ 256 (264)
.|||....+.. +.+.+|||+|+..++.+.- ....||.|..++...++|++..+.
T Consensus 115 ~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~k--~~~~Cp~c~~~f~~~DiI~Lnp~~ 172 (260)
T PF04641_consen 115 ICPVTGKEFNGKHKFVYLRPCGCVFSEKALKELK--KSKKCPVCGKPFTEEDIIPLNPPE 172 (260)
T ss_pred ECCCCCcccCCceeEEEEcCCCCEeeHHHHHhhc--ccccccccCCccccCCEEEecCCc
Confidence 69999987743 5677999999999999973 345799999999999999987754
No 55
>KOG1813|consensus
Probab=96.72 E-value=0.00056 Score=64.48 Aligned_cols=44 Identities=18% Similarity=0.305 Sum_probs=37.2
Q ss_pred ccccccccccCceeeCCCCeecHhhHHHHhccCCCcccccccccc
Q psy9201 201 LCKICAENDKDIRIEPCGHLLCTPCLTSWQVSNRSRILFYLFYFF 245 (264)
Q Consensus 201 lC~ICle~~kdpvitpCGH~FC~~CI~~wl~s~~~~CP~CR~~i~ 245 (264)
.|-||.+.+.+||++.|||.||..|...-+.. ...|++|.....
T Consensus 243 ~c~icr~~f~~pVvt~c~h~fc~~ca~~~~qk-~~~c~vC~~~t~ 286 (313)
T KOG1813|consen 243 KCFICRKYFYRPVVTKCGHYFCEVCALKPYQK-GEKCYVCSQQTH 286 (313)
T ss_pred cccccccccccchhhcCCceeehhhhcccccc-CCcceecccccc
Confidence 49999999999999999999999998776543 457999976543
No 56
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=96.67 E-value=0.001 Score=48.40 Aligned_cols=46 Identities=26% Similarity=0.449 Sum_probs=37.7
Q ss_pred cccccccccccCceeeCCCCeecHhhHHHHhccCCCccccccccccccc
Q psy9201 200 QLCKICAENDKDIRIEPCGHLLCTPCLTSWQVSNRSRILFYLFYFFSVK 248 (264)
Q Consensus 200 elC~ICle~~kdpvitpCGH~FC~~CI~~wl~s~~~~CP~CR~~i~~~~ 248 (264)
..|-.|....+..+++||||+.|..|..-+ +-..||+|.+++...+
T Consensus 8 ~~~~~~~~~~~~~~~~pCgH~I~~~~f~~~---rYngCPfC~~~~~~~~ 53 (55)
T PF14447_consen 8 QPCVFCGFVGTKGTVLPCGHLICDNCFPGE---RYNGCPFCGTPFEFDD 53 (55)
T ss_pred eeEEEccccccccccccccceeeccccChh---hccCCCCCCCcccCCC
Confidence 358889898888999999999999997654 3347999999987654
No 57
>KOG0804|consensus
Probab=96.52 E-value=0.00072 Score=66.81 Aligned_cols=42 Identities=24% Similarity=0.448 Sum_probs=34.1
Q ss_pred ccccccccccC----ceeeCCCCeecHhhHHHHhccCCCcccccccccc
Q psy9201 201 LCKICAENDKD----IRIEPCGHLLCTPCLTSWQVSNRSRILFYLFYFF 245 (264)
Q Consensus 201 lC~ICle~~kd----pvitpCGH~FC~~CI~~wl~s~~~~CP~CR~~i~ 245 (264)
.|+||+|+..+ .+...|-|.|..+|+..|-. .+||+||--..
T Consensus 177 TCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w~~---~scpvcR~~q~ 222 (493)
T KOG0804|consen 177 TCPVCLERMDSSTTGILTILCNHSFHCSCLMKWWD---SSCPVCRYCQS 222 (493)
T ss_pred CcchhHhhcCccccceeeeecccccchHHHhhccc---CcChhhhhhcC
Confidence 59999998765 35678999999999999964 47999986544
No 58
>KOG1734|consensus
Probab=96.48 E-value=0.00089 Score=62.72 Aligned_cols=47 Identities=13% Similarity=0.406 Sum_probs=35.2
Q ss_pred cccccccccc----------CceeeCCCCeecHhhHHHHhc-cCCCcccccccccccc
Q psy9201 201 LCKICAENDK----------DIRIEPCGHLLCTPCLTSWQV-SNRSRILFYLFYFFSV 247 (264)
Q Consensus 201 lC~ICle~~k----------dpvitpCGH~FC~~CI~~wl~-s~~~~CP~CR~~i~~~ 247 (264)
.|.||-.... +.-.+.|+|+|+..||..|-- ..+++||.|++.+..+
T Consensus 226 vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWcivGKkqtCPYCKekVdl~ 283 (328)
T KOG1734|consen 226 VCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKVDLK 283 (328)
T ss_pred hhHhhcchheeecchhhhhhhheeeecccchHHHhhhhheeecCCCCCchHHHHhhHh
Confidence 4666655332 344689999999999999965 3567999999887654
No 59
>KOG1493|consensus
Probab=96.35 E-value=0.00064 Score=52.68 Aligned_cols=33 Identities=12% Similarity=0.261 Sum_probs=26.7
Q ss_pred eeeCCCCeecHhhHHHHhcc--CCCcccccccccc
Q psy9201 213 RIEPCGHLLCTPCLTSWQVS--NRSRILFYLFYFF 245 (264)
Q Consensus 213 vitpCGH~FC~~CI~~wl~s--~~~~CP~CR~~i~ 245 (264)
+.-.|.|.|...||.+|+.. +...||+||....
T Consensus 47 v~G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~~ 81 (84)
T KOG1493|consen 47 VWGYCLHAFHAHCILKWLNTPTSQGQCPMCRQTWQ 81 (84)
T ss_pred HHHHHHHHHHHHHHHHHhcCccccccCCcchheeE
Confidence 34479999999999999973 3468999998764
No 60
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=96.18 E-value=0.0025 Score=61.71 Aligned_cols=45 Identities=22% Similarity=0.386 Sum_probs=37.1
Q ss_pred ccccccccccccCceeeCCCCeecHhhHHHH--hccCCCccccccccc
Q psy9201 199 FQLCKICAENDKDIRIEPCGHLLCTPCLTSW--QVSNRSRILFYLFYF 244 (264)
Q Consensus 199 ~elC~ICle~~kdpvitpCGH~FC~~CI~~w--l~s~~~~CP~CR~~i 244 (264)
.+.|.||.+......++||+|.+|.-|.... +- ....||+||.+-
T Consensus 61 n~~C~ICA~~~TYs~~~PC~H~~CH~Ca~RlRALY-~~K~C~~CrTE~ 107 (493)
T COG5236 61 NMNCQICAGSTTYSARYPCGHQICHACAVRLRALY-MQKGCPLCRTET 107 (493)
T ss_pred cceeEEecCCceEEEeccCCchHHHHHHHHHHHHH-hccCCCcccccc
Confidence 4479999999999999999999999997653 33 345899999764
No 61
>KOG4185|consensus
Probab=96.18 E-value=0.0031 Score=58.03 Aligned_cols=44 Identities=27% Similarity=0.486 Sum_probs=38.3
Q ss_pred cccccccccc------CceeeCCCCeecHhhHHHHhccCCCccccccccc
Q psy9201 201 LCKICAENDK------DIRIEPCGHLLCTPCLTSWQVSNRSRILFYLFYF 244 (264)
Q Consensus 201 lC~ICle~~k------dpvitpCGH~FC~~CI~~wl~s~~~~CP~CR~~i 244 (264)
.|-||.+.+. .|+++.|||.+|..|+...+....-.||+||.+.
T Consensus 5 ~c~~c~~~~s~~~~~~~p~~l~c~h~~c~~c~~~l~~~~~i~cpfcR~~~ 54 (296)
T KOG4185|consen 5 ECEICNEDYSSEDGDHIPRVLKCGHTICQNCASKLLGNSRILCPFCRETT 54 (296)
T ss_pred ceeecCccccccCcccCCcccccCceehHhHHHHHhcCceeeccCCCCcc
Confidence 5999999765 3889999999999999998887777899999984
No 62
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=96.13 E-value=0.0019 Score=61.40 Aligned_cols=43 Identities=16% Similarity=0.325 Sum_probs=36.4
Q ss_pred cccccccccccCceee-CCCCeecHhhHHHHhccCCCccccccc
Q psy9201 200 QLCKICAENDKDIRIE-PCGHLLCTPCLTSWQVSNRSRILFYLF 242 (264)
Q Consensus 200 elC~ICle~~kdpvit-pCGH~FC~~CI~~wl~s~~~~CP~CR~ 242 (264)
..|+.|....++|+-+ .|||.||..||...+......||.|..
T Consensus 275 LkCplc~~Llrnp~kT~cC~~~fc~eci~~al~dsDf~CpnC~r 318 (427)
T COG5222 275 LKCPLCHCLLRNPMKTPCCGHTFCDECIGTALLDSDFKCPNCSR 318 (427)
T ss_pred ccCcchhhhhhCcccCccccchHHHHHHhhhhhhccccCCCccc
Confidence 3699999999999988 589999999999776544568999965
No 63
>KOG0825|consensus
Probab=96.09 E-value=0.0013 Score=68.74 Aligned_cols=53 Identities=21% Similarity=0.302 Sum_probs=41.4
Q ss_pred ccccccccccCc---eeeCCCCeecHhhHHHHhccCCCcccccccccccccceeccc
Q psy9201 201 LCKICAENDKDI---RIEPCGHLLCTPCLTSWQVSNRSRILFYLFYFFSVKEIPLWT 254 (264)
Q Consensus 201 lC~ICle~~kdp---vitpCGH~FC~~CI~~wl~s~~~~CP~CR~~i~~~~vipl~~ 254 (264)
.|++|+....|- .-.+|+|.||..|+..|-.. ..+||.||..+....+..-+.
T Consensus 125 ~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR~-aqTCPiDR~EF~~v~V~eS~~ 180 (1134)
T KOG0825|consen 125 QCPNCLKSCNDQLEESEKHTAHYFCEECVGSWSRC-AQTCPVDRGEFGEVKVLESTG 180 (1134)
T ss_pred hhhHHHHHHHHHhhccccccccccHHHHhhhhhhh-cccCchhhhhhheeeeecccc
Confidence 599999877653 23589999999999999864 458999999998866554433
No 64
>KOG1001|consensus
Probab=96.02 E-value=0.0018 Score=67.14 Aligned_cols=48 Identities=23% Similarity=0.424 Sum_probs=40.6
Q ss_pred ccccccccccCceeeCCCCeecHhhHHHHhcc-CCCcccccccccccccc
Q psy9201 201 LCKICAENDKDIRIEPCGHLLCTPCLTSWQVS-NRSRILFYLFYFFSVKE 249 (264)
Q Consensus 201 lC~ICle~~kdpvitpCGH~FC~~CI~~wl~s-~~~~CP~CR~~i~~~~v 249 (264)
.|.+|.+ ...+++++|||.||..|+.+.+.. ....||.||..+...+.
T Consensus 456 ~c~ic~~-~~~~~it~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~~~~l 504 (674)
T KOG1001|consen 456 WCHICCD-LDSFFITRCGHDFCVECLKKSIQQSENAPCPLCRNVLKEKKL 504 (674)
T ss_pred ccccccc-cccceeecccchHHHHHHHhccccccCCCCcHHHHHHHHHHH
Confidence 6999999 888999999999999999987764 33469999988776553
No 65
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=96.01 E-value=0.0018 Score=48.59 Aligned_cols=46 Identities=22% Similarity=0.421 Sum_probs=23.3
Q ss_pred cccccccccc-C-----cee--eCCCCeecHhhHHHHhcc--CC--------Cccccccccccc
Q psy9201 201 LCKICAENDK-D-----IRI--EPCGHLLCTPCLTSWQVS--NR--------SRILFYLFYFFS 246 (264)
Q Consensus 201 lC~ICle~~k-d-----pvi--tpCGH~FC~~CI~~wl~s--~~--------~~CP~CR~~i~~ 246 (264)
.|.||.+..- + .+. ..|++.|+..|+.+|+.. +. .+||.|++++.-
T Consensus 4 ~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~~ 67 (70)
T PF11793_consen 4 ECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPISW 67 (70)
T ss_dssp S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEEG
T ss_pred CCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeeeE
Confidence 5999998643 2 222 279999999999999862 11 369999988753
No 66
>KOG0826|consensus
Probab=95.98 E-value=0.003 Score=60.48 Aligned_cols=54 Identities=20% Similarity=0.453 Sum_probs=43.7
Q ss_pred cccccccccccCce-eeCCCCeecHhhHHHHhccCCCcccccccccccccceeccc
Q psy9201 200 QLCKICAENDKDIR-IEPCGHLLCTPCLTSWQVSNRSRILFYLFYFFSVKEIPLWT 254 (264)
Q Consensus 200 elC~ICle~~kdpv-itpCGH~FC~~CI~~wl~s~~~~CP~CR~~i~~~~vipl~~ 254 (264)
+.|++|+..-.+|. +.--|-+||.+|+-+.+.+ ...||+-..+..-.+.+.+++
T Consensus 301 ~~CpvClk~r~Nptvl~vSGyVfCY~Ci~~Yv~~-~~~CPVT~~p~~v~~l~rl~~ 355 (357)
T KOG0826|consen 301 EVCPVCLKKRQNPTVLEVSGYVFCYPCIFSYVVN-YGHCPVTGYPASVDHLIRLFN 355 (357)
T ss_pred ccChhHHhccCCCceEEecceEEeHHHHHHHHHh-cCCCCccCCcchHHHHHHHhc
Confidence 46999999776654 4556999999999999984 558999999888877777665
No 67
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=95.86 E-value=0.0066 Score=43.00 Aligned_cols=43 Identities=21% Similarity=0.403 Sum_probs=21.7
Q ss_pred ccccccccc--Cceee--CCCCeecHhhHHHHhccCCCccccccccc
Q psy9201 202 CKICAENDK--DIRIE--PCGHLLCTPCLTSWQVSNRSRILFYLFYF 244 (264)
Q Consensus 202 C~ICle~~k--dpvit--pCGH~FC~~CI~~wl~s~~~~CP~CR~~i 244 (264)
|++|.+... +.... +||+..|..|....++.....||-||++.
T Consensus 1 cp~C~e~~d~~d~~~~PC~Cgf~IC~~C~~~i~~~~~g~CPgCr~~Y 47 (48)
T PF14570_consen 1 CPLCDEELDETDKDFYPCECGFQICRFCYHDILENEGGRCPGCREPY 47 (48)
T ss_dssp -TTTS-B--CCCTT--SSTTS----HHHHHHHTTSS-SB-TTT--B-
T ss_pred CCCcccccccCCCccccCcCCCcHHHHHHHHHHhccCCCCCCCCCCC
Confidence 678888652 33333 68899999999998875566899999864
No 68
>KOG4739|consensus
Probab=95.73 E-value=0.0036 Score=57.41 Aligned_cols=48 Identities=19% Similarity=0.384 Sum_probs=34.5
Q ss_pred cccccccccc-C-ceeeCCCCeecHhhHHHHhccCCCccccccccccccccee
Q psy9201 201 LCKICAENDK-D-IRIEPCGHLLCTPCLTSWQVSNRSRILFYLFYFFSVKEIP 251 (264)
Q Consensus 201 lC~ICle~~k-d-pvitpCGH~FC~~CI~~wl~s~~~~CP~CR~~i~~~~vip 251 (264)
-|..|..... + --++.|+|+||..|...-. ...||.|++++...+.-+
T Consensus 5 hCn~C~~~~~~~~f~LTaC~HvfC~~C~k~~~---~~~C~lCkk~ir~i~l~~ 54 (233)
T KOG4739|consen 5 HCNKCFRFPSQDPFFLTACRHVFCEPCLKASS---PDVCPLCKKSIRIIQLNR 54 (233)
T ss_pred EeccccccCCCCceeeeechhhhhhhhcccCC---ccccccccceeeeeeccc
Confidence 4777776554 2 3589999999999986532 238999999976655433
No 69
>KOG2660|consensus
Probab=95.66 E-value=0.0027 Score=60.64 Aligned_cols=49 Identities=16% Similarity=0.375 Sum_probs=40.8
Q ss_pred ccccccccccccCc-eeeCCCCeecHhhHHHHhccCCCccccccccccccc
Q psy9201 199 FQLCKICAENDKDI-RIEPCGHLLCTPCLTSWQVSNRSRILFYLFYFFSVK 248 (264)
Q Consensus 199 ~elC~ICle~~kdp-vitpCGH~FC~~CI~~wl~s~~~~CP~CR~~i~~~~ 248 (264)
...|.+|...+.|+ .++.|-|.||.+||.+.+.. ...||.|...+....
T Consensus 15 ~itC~LC~GYliDATTI~eCLHTFCkSCivk~l~~-~~~CP~C~i~ih~t~ 64 (331)
T KOG2660|consen 15 HITCRLCGGYLIDATTITECLHTFCKSCIVKYLEE-SKYCPTCDIVIHKTH 64 (331)
T ss_pred ceehhhccceeecchhHHHHHHHHHHHHHHHHHHH-hccCCccceeccCcc
Confidence 34699999999886 46789999999999999886 568999988776653
No 70
>KOG1645|consensus
Probab=95.61 E-value=0.0039 Score=61.21 Aligned_cols=55 Identities=20% Similarity=0.391 Sum_probs=43.5
Q ss_pred ccccccccccC-----ceeeCCCCeecHhhHHHHhcc-CCCcccccccccccccceeccch
Q psy9201 201 LCKICAENDKD-----IRIEPCGHLLCTPCLTSWQVS-NRSRILFYLFYFFSVKEIPLWTP 255 (264)
Q Consensus 201 lC~ICle~~kd-----pvitpCGH~FC~~CI~~wl~s-~~~~CP~CR~~i~~~~vipl~~~ 255 (264)
.|+||++...- .+.+.|||.|=.+||++|+.+ ..+.||.|...-...++.+.+..
T Consensus 6 tcpiclds~~~~g~hr~vsl~cghlFgs~cie~wl~k~~~~~cp~c~~katkr~i~~e~al 66 (463)
T KOG1645|consen 6 TCPICLDSYTTAGNHRIVSLQCGHLFGSQCIEKWLGKKTKMQCPLCSGKATKRQIRPEYAL 66 (463)
T ss_pred cCceeeeeeeecCceEEeeecccccccHHHHHHHHhhhhhhhCcccCChhHHHHHHHHHHH
Confidence 59999996543 578899999999999999973 34689999887766666666553
No 71
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=95.48 E-value=0.0091 Score=46.76 Aligned_cols=34 Identities=12% Similarity=0.260 Sum_probs=27.9
Q ss_pred ceeeCCCCeecHhhHHHHhccCCCccccccccccc
Q psy9201 212 IRIEPCGHLLCTPCLTSWQVSNRSRILFYLFYFFS 246 (264)
Q Consensus 212 pvitpCGH~FC~~CI~~wl~s~~~~CP~CR~~i~~ 246 (264)
.+.-.|.|.|...||.+|+..+ ..||++|.....
T Consensus 49 v~wG~CnHaFH~HCI~rWL~Tk-~~CPld~q~w~~ 82 (88)
T COG5194 49 VVWGVCNHAFHDHCIYRWLDTK-GVCPLDRQTWVL 82 (88)
T ss_pred EEEEecchHHHHHHHHHHHhhC-CCCCCCCceeEE
Confidence 4455799999999999999864 589999987643
No 72
>KOG1100|consensus
Probab=95.39 E-value=0.0085 Score=53.87 Aligned_cols=40 Identities=30% Similarity=0.514 Sum_probs=34.0
Q ss_pred cccccccccCceeeCCCCe-ecHhhHHHHhccCCCccccccccccc
Q psy9201 202 CKICAENDKDIRIEPCGHL-LCTPCLTSWQVSNRSRILFYLFYFFS 246 (264)
Q Consensus 202 C~ICle~~kdpvitpCGH~-FC~~CI~~wl~s~~~~CP~CR~~i~~ 246 (264)
|..|.+....+.++||-|+ +|..|-.. -+.||.|+.....
T Consensus 161 Cr~C~~~~~~VlllPCrHl~lC~~C~~~-----~~~CPiC~~~~~s 201 (207)
T KOG1100|consen 161 CRKCGEREATVLLLPCRHLCLCGICDES-----LRICPICRSPKTS 201 (207)
T ss_pred ceecCcCCceEEeecccceEeccccccc-----CccCCCCcChhhc
Confidence 9999999999999999997 89999533 4579999887544
No 73
>KOG1814|consensus
Probab=94.64 E-value=0.021 Score=56.23 Aligned_cols=45 Identities=27% Similarity=0.557 Sum_probs=33.7
Q ss_pred CcccccccccccccC---ceeeCCCCeecHhhHHHHhc-------cCCCccccccc
Q psy9201 197 STFQLCKICAENDKD---IRIEPCGHLLCTPCLTSWQV-------SNRSRILFYLF 242 (264)
Q Consensus 197 st~elC~ICle~~kd---pvitpCGH~FC~~CI~~wl~-------s~~~~CP~CR~ 242 (264)
+-+ .|.||.+.... .+.+||+|+||..|+..+.+ .+..+||-+..
T Consensus 183 slf-~C~ICf~e~~G~~c~~~lpC~Hv~Ck~C~kdY~~~~i~eg~v~~l~Cp~~~C 237 (445)
T KOG1814|consen 183 SLF-DCCICFEEQMGQHCFKFLPCSHVFCKSCLKDYFTIQIQEGQVSCLKCPDPKC 237 (445)
T ss_pred hcc-cceeeehhhcCcceeeecccchHHHHHHHHHHHHHhhhcceeeeecCCCCCC
Confidence 444 59999997764 67899999999999998764 12347876643
No 74
>KOG3800|consensus
Probab=94.63 E-value=0.019 Score=54.21 Aligned_cols=46 Identities=22% Similarity=0.517 Sum_probs=34.4
Q ss_pred cccccccc---ccC--ceeeCCCCeecHhhHHHHhccCCCccccccccccc
Q psy9201 201 LCKICAEN---DKD--IRIEPCGHLLCTPCLTSWQVSNRSRILFYLFYFFS 246 (264)
Q Consensus 201 lC~ICle~---~kd--pvitpCGH~FC~~CI~~wl~s~~~~CP~CR~~i~~ 246 (264)
.|++|..+ ..+ ..+-+|||.+|.+|+......+...||.|.+.+-.
T Consensus 2 ~Cp~CKt~~Y~np~lk~~in~C~H~lCEsCvd~iF~~g~~~CpeC~~iLRk 52 (300)
T KOG3800|consen 2 ACPKCKTDRYLNPDLKLMINECGHRLCESCVDRIFSLGPAQCPECMVILRK 52 (300)
T ss_pred CCcccccceecCccceeeeccccchHHHHHHHHHHhcCCCCCCcccchhhh
Confidence 47777663 233 23459999999999999888777899999776543
No 75
>PHA03096 p28-like protein; Provisional
Probab=93.72 E-value=0.028 Score=52.91 Aligned_cols=42 Identities=21% Similarity=0.303 Sum_probs=30.6
Q ss_pred ccccccccccC--------ceeeCCCCeecHhhHHHHhcc--CCCccccccc
Q psy9201 201 LCKICAENDKD--------IRIEPCGHLLCTPCLTSWQVS--NRSRILFYLF 242 (264)
Q Consensus 201 lC~ICle~~kd--------pvitpCGH~FC~~CI~~wl~s--~~~~CP~CR~ 242 (264)
.|.||+++... -.+..|.|.||..|+..|... ....||.||.
T Consensus 180 ~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~wr~~~~~~e~~~~c~~ 231 (284)
T PHA03096 180 ICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIWMTESLYKETEPENRR 231 (284)
T ss_pred hcccchhhhhhhccccccccccccCCcHHHHHHHHHHHHhhhhcccCccccc
Confidence 59999996542 346789999999999999863 2334555543
No 76
>KOG1941|consensus
Probab=93.60 E-value=0.023 Score=55.83 Aligned_cols=45 Identities=20% Similarity=0.363 Sum_probs=35.4
Q ss_pred ccccccccc--c--CceeeCCCCeecHhhHHHHhcc-CCCcccccccccc
Q psy9201 201 LCKICAEND--K--DIRIEPCGHLLCTPCLTSWQVS-NRSRILFYLFYFF 245 (264)
Q Consensus 201 lC~ICle~~--k--dpvitpCGH~FC~~CI~~wl~s-~~~~CP~CR~~i~ 245 (264)
.|..|-+.. + .-..+||.|.|+.+|+.+.+.+ ..++||.||+-.+
T Consensus 367 ~Cg~CGe~~Glk~e~LqALpCsHIfH~rCl~e~L~~n~~rsCP~CrklrS 416 (518)
T KOG1941|consen 367 YCGLCGESIGLKNERLQALPCSHIFHLRCLQEILENNGTRSCPNCRKLRS 416 (518)
T ss_pred hhhhhhhhhcCCcccccccchhHHHHHHHHHHHHHhCCCCCCccHHHHHh
Confidence 499998843 2 3567899999999999998864 4679999995433
No 77
>PHA02862 5L protein; Provisional
Probab=93.42 E-value=0.05 Score=46.92 Aligned_cols=46 Identities=15% Similarity=0.384 Sum_probs=36.1
Q ss_pred cccccccccccCceeeCCCC-----eecHhhHHHHhcc-CCCccccccccccc
Q psy9201 200 QLCKICAENDKDIRIEPCGH-----LLCTPCLTSWQVS-NRSRILFYLFYFFS 246 (264)
Q Consensus 200 elC~ICle~~kdpvitpCGH-----~FC~~CI~~wl~s-~~~~CP~CR~~i~~ 246 (264)
+.|-||.+...+. ..||.. ..+.+|+++|++. ++..|+.|+.+..-
T Consensus 3 diCWIC~~~~~e~-~~PC~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY~I 54 (156)
T PHA02862 3 DICWICNDVCDER-NNFCGCNEEYKVVHIKCMQLWINYSKKKECNLCKTKYNI 54 (156)
T ss_pred CEEEEecCcCCCC-cccccccCcchhHHHHHHHHHHhcCCCcCccCCCCeEEE
Confidence 3699999987544 588875 3589999999974 56799999988643
No 78
>PF04757 Pex2_Pex12: Pex2 / Pex12 amino terminal region; InterPro: IPR006845 This region is the N-terminal part of a number of peroxisomal biogenesis proteins, including Pex2, Pex10 and Pex12, which contain two predicted transmembrane segments. The majority of these proteins have a C-terminal ring finger domain IPR001841 from INTERPRO.; GO: 0007031 peroxisome organization, 0005778 peroxisomal membrane
Probab=93.10 E-value=0.038 Score=48.64 Aligned_cols=34 Identities=15% Similarity=0.126 Sum_probs=29.4
Q ss_pred hhhhhhhheehheeccc-hHHHHHHHhccccccCC
Q psy9201 23 LFSLSFMLFIIFLFSWG-LPEFARFQLGLYLPFGD 56 (264)
Q Consensus 23 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 56 (264)
+-.+.+.-++.||++|+ |+++++|++|++|++..
T Consensus 145 ~~~~~~~~~~~Fl~~g~~y~s~~~rllgi~~~~~~ 179 (229)
T PF04757_consen 145 YELLNLLHLLLFLLGGTPYYSPSKRLLGIRYVRLS 179 (229)
T ss_pred HHHHHHHHHHHHHhCCCCCCCHHHHHhCcEEEECC
Confidence 34456677788999999 99999999999999995
No 79
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=93.03 E-value=0.076 Score=46.32 Aligned_cols=46 Identities=15% Similarity=0.275 Sum_probs=36.1
Q ss_pred ccccccccccCceeeCCCCee-----cHhhHHHHhcc-CCCcccccccccccc
Q psy9201 201 LCKICAENDKDIRIEPCGHLL-----CTPCLTSWQVS-NRSRILFYLFYFFSV 247 (264)
Q Consensus 201 lC~ICle~~kdpvitpCGH~F-----C~~CI~~wl~s-~~~~CP~CR~~i~~~ 247 (264)
.|-||.+... +...||.... +.+|+++|+.. +...|+.|+.++.-.
T Consensus 10 ~CRIC~~~~~-~~~~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~i~ 61 (162)
T PHA02825 10 CCWICKDEYD-VVTNYCNCKNENKIVHKECLEEWINTSKNKSCKICNGPYNIK 61 (162)
T ss_pred eeEecCCCCC-CccCCcccCCCchHHHHHHHHHHHhcCCCCcccccCCeEEEE
Confidence 5999999865 3457888654 89999999974 567999999887543
No 80
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=92.93 E-value=0.039 Score=51.28 Aligned_cols=44 Identities=23% Similarity=0.518 Sum_probs=34.1
Q ss_pred ccccccccc---cCce--eeC-CCCeecHhhHHHHhccCCCccc--cccccc
Q psy9201 201 LCKICAEND---KDIR--IEP-CGHLLCTPCLTSWQVSNRSRIL--FYLFYF 244 (264)
Q Consensus 201 lC~ICle~~---kdpv--itp-CGH~FC~~CI~~wl~s~~~~CP--~CR~~i 244 (264)
.|++|..+- .|++ +.| |-|.+|.+|+......+...|| -|.+-+
T Consensus 12 ~CPvCksDrYLnPdik~linPECyHrmCESCvdRIFs~GpAqCP~~gC~kIL 63 (314)
T COG5220 12 RCPVCKSDRYLNPDIKILINPECYHRMCESCVDRIFSRGPAQCPYKGCGKIL 63 (314)
T ss_pred cCCccccccccCCCeEEEECHHHHHHHHHHHHHHHhcCCCCCCCCccHHHHH
Confidence 699998843 3443 345 9999999999999887778999 786544
No 81
>KOG4367|consensus
Probab=92.76 E-value=0.059 Score=53.82 Aligned_cols=31 Identities=32% Similarity=0.743 Sum_probs=28.9
Q ss_pred ccccccccccCceeeCCCCeecHhhHHHHhc
Q psy9201 201 LCKICAENDKDIRIEPCGHLLCTPCLTSWQV 231 (264)
Q Consensus 201 lC~ICle~~kdpvitpCGH~FC~~CI~~wl~ 231 (264)
+|+||-.-+.+|+++||||..|..|...-+.
T Consensus 6 kc~vc~~f~~epiil~c~h~lc~~ca~~~~~ 36 (699)
T KOG4367|consen 6 KCPVCGSFYREPIILPCSHNLCQACARNILV 36 (699)
T ss_pred cCceehhhccCceEeecccHHHHHHHHhhcc
Confidence 6999999999999999999999999987665
No 82
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=92.61 E-value=0.082 Score=46.10 Aligned_cols=50 Identities=18% Similarity=0.339 Sum_probs=36.0
Q ss_pred ccccccccccCceeeCCC-C-eec-----------HhhHHHHhcc------------------------------CCCcc
Q psy9201 201 LCKICAENDKDIRIEPCG-H-LLC-----------TPCLTSWQVS------------------------------NRSRI 237 (264)
Q Consensus 201 lC~ICle~~kdpvitpCG-H-~FC-----------~~CI~~wl~s------------------------------~~~~C 237 (264)
.|+||+|.+.+.|++-|. | ..| +.|+++..+. ..-.|
T Consensus 4 ~CpICme~PHNAVLLlCSS~~kgcRpymc~Ts~rhSNCLdqfkka~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~C 83 (162)
T PF07800_consen 4 TCPICMEHPHNAVLLLCSSHEKGCRPYMCDTSYRHSNCLDQFKKAYGKSSSSSSQSSSSAPSDSSSSESSESQEQPELAC 83 (162)
T ss_pred cCceeccCCCceEEEEeccccCCccccccCCccchhHHHHHHHHHhcCCCCccccccccCcCCCcccccccccccccccC
Confidence 699999999999998775 2 123 6788887430 12479
Q ss_pred cccccccccccce
Q psy9201 238 LFYLFYFFSVKEI 250 (264)
Q Consensus 238 P~CR~~i~~~~vi 250 (264)
|.||..++.-.++
T Consensus 84 PLCRG~V~GWtvv 96 (162)
T PF07800_consen 84 PLCRGEVKGWTVV 96 (162)
T ss_pred ccccCceeceEEc
Confidence 9999988764443
No 83
>KOG3002|consensus
Probab=92.46 E-value=0.075 Score=50.38 Aligned_cols=42 Identities=19% Similarity=0.308 Sum_probs=32.7
Q ss_pred ccccccccccCceee-CCCCeecHhhHHHHhccCCCccccccccccc
Q psy9201 201 LCKICAENDKDIRIE-PCGHLLCTPCLTSWQVSNRSRILFYLFYFFS 246 (264)
Q Consensus 201 lC~ICle~~kdpvit-pCGH~FC~~CI~~wl~s~~~~CP~CR~~i~~ 246 (264)
.|+||.+....|... +=||..|..|-.+- ...||.||.++..
T Consensus 50 eCPvC~~~l~~Pi~QC~nGHlaCssC~~~~----~~~CP~Cr~~~g~ 92 (299)
T KOG3002|consen 50 DCPVCFNPLSPPIFQCDNGHLACSSCRTKV----SNKCPTCRLPIGN 92 (299)
T ss_pred cCchhhccCcccceecCCCcEehhhhhhhh----cccCCcccccccc
Confidence 599999998877432 34899999997642 3479999998874
No 84
>KOG3970|consensus
Probab=92.41 E-value=0.074 Score=49.09 Aligned_cols=45 Identities=20% Similarity=0.292 Sum_probs=36.1
Q ss_pred ccccccccc--cCceeeCCCCeecHhhHHHHhc-------cCCCcccccccccc
Q psy9201 201 LCKICAEND--KDIRIEPCGHLLCTPCLTSWQV-------SNRSRILFYLFYFF 245 (264)
Q Consensus 201 lC~ICle~~--kdpvitpCGH~FC~~CI~~wl~-------s~~~~CP~CR~~i~ 245 (264)
-|..|.... .|.+.+.|-|+|++.|+.+|.. .....||.|..+|-
T Consensus 52 NC~LC~t~La~gdt~RLvCyhlfHW~ClneraA~lPanTAPaGyqCP~Cs~eiF 105 (299)
T KOG3970|consen 52 NCRLCNTPLASGDTTRLVCYHLFHWKCLNERAANLPANTAPAGYQCPCCSQEIF 105 (299)
T ss_pred CCceeCCccccCcceeehhhhhHHHHHhhHHHhhCCCcCCCCcccCCCCCCccC
Confidence 388888755 4688899999999999999975 23568999987753
No 85
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=92.36 E-value=0.11 Score=50.38 Aligned_cols=54 Identities=15% Similarity=0.410 Sum_probs=37.9
Q ss_pred CcccccccccccccCceee--------------------CCC--CeecHhhHHHHhcc------------CCCccccccc
Q psy9201 197 STFQLCKICAENDKDIRIE--------------------PCG--HLLCTPCLTSWQVS------------NRSRILFYLF 242 (264)
Q Consensus 197 st~elC~ICle~~kdpvit--------------------pCG--H~FC~~CI~~wl~s------------~~~~CP~CR~ 242 (264)
++.|.|--|+....++++. +|. -+-|.+|+-+|..+ ++-.||+||+
T Consensus 269 ~e~e~CigC~~~~~~vkl~k~C~~~~~~g~~~~~~~~C~~C~CRPmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa 348 (358)
T PF10272_consen 269 QELEPCIGCMQAQPNVKLVKRCADEEQEGSPLPNEPPCQQCYCRPMWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRA 348 (358)
T ss_pred cccCCccccccCCCCcEEEeccCCcccCCcccccCCCCccccccchHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCcc
Confidence 4556698899877765544 222 23499999999752 2358999999
Q ss_pred ccccccce
Q psy9201 243 YFFSVKEI 250 (264)
Q Consensus 243 ~i~~~~vi 250 (264)
.+.-.|+-
T Consensus 349 ~FCilDV~ 356 (358)
T PF10272_consen 349 KFCILDVC 356 (358)
T ss_pred cceeeeee
Confidence 98876653
No 86
>KOG2930|consensus
Probab=90.98 E-value=0.1 Score=42.75 Aligned_cols=29 Identities=14% Similarity=0.274 Sum_probs=24.6
Q ss_pred eeCCCCeecHhhHHHHhccCCCcccccccc
Q psy9201 214 IEPCGHLLCTPCLTSWQVSNRSRILFYLFY 243 (264)
Q Consensus 214 itpCGH~FC~~CI~~wl~s~~~~CP~CR~~ 243 (264)
-=.|.|.|+..||.+|++.+ ..||.|.++
T Consensus 78 WG~CNHaFH~hCisrWlktr-~vCPLdn~e 106 (114)
T KOG2930|consen 78 WGVCNHAFHFHCISRWLKTR-NVCPLDNKE 106 (114)
T ss_pred eeecchHHHHHHHHHHHhhc-CcCCCcCcc
Confidence 34799999999999999865 479999765
No 87
>KOG2817|consensus
Probab=90.73 E-value=0.18 Score=49.42 Aligned_cols=55 Identities=16% Similarity=0.306 Sum_probs=41.0
Q ss_pred Cccccccccccccc---CceeeCCCCeecHhhHHHHhccCC--Ccccccccccccccceec
Q psy9201 197 STFQLCKICAENDK---DIRIEPCGHLLCTPCLTSWQVSNR--SRILFYLFYFFSVKEIPL 252 (264)
Q Consensus 197 st~elC~ICle~~k---dpvitpCGH~FC~~CI~~wl~s~~--~~CP~CR~~i~~~~vipl 252 (264)
+.| .|||=.+.-. .|+.+.|||+.|.+-+.+..+++. -+||.|=......+...+
T Consensus 333 SvF-~CPVlKeqtsdeNPPm~L~CGHVISkdAlnrLS~ng~~sfKCPYCP~e~~~~~~kql 392 (394)
T KOG2817|consen 333 SVF-ICPVLKEQTSDENPPMMLICGHVISKDALNRLSKNGSQSFKCPYCPVEQLASDTKQL 392 (394)
T ss_pred cee-ecccchhhccCCCCCeeeeccceecHHHHHHHhhCCCeeeeCCCCCcccCHHhcccc
Confidence 445 5999776433 488999999999999999877655 589999776655554443
No 88
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=90.63 E-value=0.16 Score=43.31 Aligned_cols=48 Identities=25% Similarity=0.521 Sum_probs=37.8
Q ss_pred ccccccccccCceee----CCCCeecHhhHHH-Hhcc-CCCccccccccccccc
Q psy9201 201 LCKICAENDKDIRIE----PCGHLLCTPCLTS-WQVS-NRSRILFYLFYFFSVK 248 (264)
Q Consensus 201 lC~ICle~~kdpvit----pCGH~FC~~CI~~-wl~s-~~~~CP~CR~~i~~~~ 248 (264)
.|.||.|...|..-+ -||-..|..|--. |... -.+.||.|+.+++...
T Consensus 82 eCnIC~etS~ee~FLKPneCCgY~iCn~Cya~LWK~~~~ypvCPvCkTSFKss~ 135 (140)
T PF05290_consen 82 ECNICKETSAEERFLKPNECCGYSICNACYANLWKFCNLYPVCPVCKTSFKSSS 135 (140)
T ss_pred eccCcccccchhhcCCcccccchHHHHHHHHHHHHHcccCCCCCcccccccccc
Confidence 599999988876543 5999999999765 7653 4579999999987643
No 89
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=90.49 E-value=0.14 Score=35.53 Aligned_cols=39 Identities=26% Similarity=0.697 Sum_probs=25.6
Q ss_pred cccccccccC--ceeeCCCC-----eecHhhHHHHhcc-CCCccccc
Q psy9201 202 CKICAENDKD--IRIEPCGH-----LLCTPCLTSWQVS-NRSRILFY 240 (264)
Q Consensus 202 C~ICle~~kd--pvitpCGH-----~FC~~CI~~wl~s-~~~~CP~C 240 (264)
|-||++...+ +.+.||+- ..+..|+.+|+.. +..+|+.|
T Consensus 1 CrIC~~~~~~~~~li~pC~C~Gs~~~vH~~CL~~W~~~~~~~~C~~C 47 (47)
T PF12906_consen 1 CRICLEGEEEDEPLISPCRCKGSMKYVHRSCLERWIRESGNRKCEIC 47 (47)
T ss_dssp ETTTTEE-SSSS-EE-SSS-SSCCGSEECCHHHHHHHHHT-SB-TTT
T ss_pred CeEeCCcCCCCCceecccccCCCcchhHHHHHHHHHHhcCCCcCCCC
Confidence 6789886553 56888874 3588999999973 45679887
No 90
>KOG4445|consensus
Probab=90.31 E-value=0.11 Score=49.58 Aligned_cols=49 Identities=14% Similarity=0.214 Sum_probs=36.9
Q ss_pred ccccccccccccC---ceeeCCCCeecHhhHHHHhc----------------------cCCCcccccccccccc
Q psy9201 199 FQLCKICAENDKD---IRIEPCGHLLCTPCLTSWQV----------------------SNRSRILFYLFYFFSV 247 (264)
Q Consensus 199 ~elC~ICle~~kd---pvitpCGH~FC~~CI~~wl~----------------------s~~~~CP~CR~~i~~~ 247 (264)
...|.||+--+.+ -..++|.|-|+..|+..+++ +....||+||..++.+
T Consensus 115 ~gqCvICLygfa~~~~ft~T~C~Hy~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i~~e 188 (368)
T KOG4445|consen 115 NGQCVICLYGFASSPAFTVTACDHYMHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERIKIE 188 (368)
T ss_pred CCceEEEEEeecCCCceeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhcccc
Confidence 3359999886654 46899999999999987754 1123799999988754
No 91
>KOG3039|consensus
Probab=90.27 E-value=0.19 Score=46.95 Aligned_cols=36 Identities=19% Similarity=0.336 Sum_probs=32.2
Q ss_pred CCcccccccccccccCceeeCCCCeecHhhHHHHhc
Q psy9201 196 GSTFQLCKICAENDKDIRIEPCGHLLCTPCLTSWQV 231 (264)
Q Consensus 196 ~st~elC~ICle~~kdpvitpCGH~FC~~CI~~wl~ 231 (264)
...|+.|+.|+....+|+++|=||+||..||.+.+-
T Consensus 40 iK~FdcCsLtLqPc~dPvit~~GylfdrEaILe~il 75 (303)
T KOG3039|consen 40 IKPFDCCSLTLQPCRDPVITPDGYLFDREAILEYIL 75 (303)
T ss_pred cCCcceeeeecccccCCccCCCCeeeeHHHHHHHHH
Confidence 456778999999999999999999999999998753
No 92
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=89.74 E-value=0.18 Score=49.14 Aligned_cols=49 Identities=18% Similarity=0.343 Sum_probs=35.0
Q ss_pred cccccccccc----CceeeCCCCeecHhhHHHHhccCCCcccccccccccccc
Q psy9201 201 LCKICAENDK----DIRIEPCGHLLCTPCLTSWQVSNRSRILFYLFYFFSVKE 249 (264)
Q Consensus 201 lC~ICle~~k----dpvitpCGH~FC~~CI~~wl~s~~~~CP~CR~~i~~~~v 249 (264)
.|+.|+|... +-.--+||-..|.-|.......-...||.||....++.+
T Consensus 16 ~cplcie~mditdknf~pc~cgy~ic~fc~~~irq~lngrcpacrr~y~denv 68 (480)
T COG5175 16 YCPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQNLNGRCPACRRKYDDENV 68 (480)
T ss_pred cCcccccccccccCCcccCCcccHHHHHHHHHHHhhccCCChHhhhhccccce
Confidence 5999999543 333458998888888765544333579999998877664
No 93
>KOG4362|consensus
Probab=89.46 E-value=0.11 Score=54.20 Aligned_cols=57 Identities=19% Similarity=0.305 Sum_probs=42.9
Q ss_pred ccccccccccCceeeCCCCeecHhhHHHHhc--cCCCcccccccccccccceeccchhhhh
Q psy9201 201 LCKICAENDKDIRIEPCGHLLCTPCLTSWQV--SNRSRILFYLFYFFSVKEIPLWTPTFVA 259 (264)
Q Consensus 201 lC~ICle~~kdpvitpCGH~FC~~CI~~wl~--s~~~~CP~CR~~i~~~~vipl~~~~f~~ 259 (264)
.|+||.+..++++.+.|.|.||..|+..-+. +....||+|+..+.....-. ++-|.+
T Consensus 23 Ec~ic~~~~~~p~~~kc~~~~l~~~~n~~f~~~~~~~~~~lc~~~~eK~s~~E--s~r~sq 81 (684)
T KOG4362|consen 23 ECPICLEHVKEPSLLKCDHIFLKFCLNKLFESKKGPKQCALCKSDIEKRSLRE--SPRFSQ 81 (684)
T ss_pred cCCceeEEeeccchhhhhHHHHhhhhhceeeccCccccchhhhhhhhhhhccc--cchHHH
Confidence 6999999999999999999999999886443 33568999987765433322 444443
No 94
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=88.44 E-value=0.22 Score=38.43 Aligned_cols=29 Identities=24% Similarity=0.739 Sum_probs=23.6
Q ss_pred ccccccccccccC--ceeeCCCCeecHhhHH
Q psy9201 199 FQLCKICAENDKD--IRIEPCGHLLCTPCLT 227 (264)
Q Consensus 199 ~elC~ICle~~kd--pvitpCGH~FC~~CI~ 227 (264)
...|++|.....+ -++.||||+++..|+.
T Consensus 78 ~~~C~vC~k~l~~~~f~~~p~~~v~H~~C~~ 108 (109)
T PF10367_consen 78 STKCSVCGKPLGNSVFVVFPCGHVVHYSCIK 108 (109)
T ss_pred CCCccCcCCcCCCceEEEeCCCeEEeccccc
Confidence 3469999997765 4577999999999974
No 95
>KOG2932|consensus
Probab=88.21 E-value=0.14 Score=49.11 Aligned_cols=45 Identities=22% Similarity=0.349 Sum_probs=31.5
Q ss_pred cccccccccc-CceeeCCCCeecHhhHHHHhccCCCccccccccccccc
Q psy9201 201 LCKICAENDK-DIRIEPCGHLLCTPCLTSWQVSNRSRILFYLFYFFSVK 248 (264)
Q Consensus 201 lC~ICle~~k-dpvitpCGH~FC~~CI~~wl~s~~~~CP~CR~~i~~~~ 248 (264)
.|--|--..+ .-+..||.|+||.+|... .+ .+.||.|-..+.+.+
T Consensus 92 fCd~Cd~PI~IYGRmIPCkHvFCl~CAr~--~~-dK~Cp~C~d~VqrIe 137 (389)
T KOG2932|consen 92 FCDRCDFPIAIYGRMIPCKHVFCLECARS--DS-DKICPLCDDRVQRIE 137 (389)
T ss_pred eecccCCcceeeecccccchhhhhhhhhc--Cc-cccCcCcccHHHHHH
Confidence 4767755433 356889999999999753 23 358999977665543
No 96
>KOG3899|consensus
Probab=88.03 E-value=0.22 Score=47.51 Aligned_cols=34 Identities=18% Similarity=0.274 Sum_probs=26.0
Q ss_pred CCCeecHhhHHHHhc------------cCCCcccccccccccccce
Q psy9201 217 CGHLLCTPCLTSWQV------------SNRSRILFYLFYFFSVKEI 250 (264)
Q Consensus 217 CGH~FC~~CI~~wl~------------s~~~~CP~CR~~i~~~~vi 250 (264)
|..+-|.+|+-+|.. .++.+||+||+.+.-.|+.
T Consensus 325 crp~wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~fci~dv~ 370 (381)
T KOG3899|consen 325 CRPLWCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNFCIRDVH 370 (381)
T ss_pred cccHHHHHHHHHHHhhcccchhHHHHHhcCCCCcchhhceEEeeee
Confidence 566789999999864 2346899999998766553
No 97
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=87.97 E-value=0.21 Score=42.47 Aligned_cols=32 Identities=22% Similarity=0.664 Sum_probs=25.4
Q ss_pred cccccccccccC---ceeeCCC------CeecHhhHHHHhc
Q psy9201 200 QLCKICAENDKD---IRIEPCG------HLLCTPCLTSWQV 231 (264)
Q Consensus 200 elC~ICle~~kd---pvitpCG------H~FC~~CI~~wl~ 231 (264)
..|.||.+...+ .+..+|| |+||..|+++|..
T Consensus 27 ~EC~IC~~~I~~~~GvV~vt~~g~lnLEkmfc~~C~~rw~~ 67 (134)
T PF05883_consen 27 VECQICFDRIDNNDGVVYVTDGGTLNLEKMFCADCDKRWRR 67 (134)
T ss_pred eeehhhhhhhhcCCCEEEEecCCeehHHHHHHHHHHHHHHh
Confidence 359999996544 6677777 6799999999953
No 98
>KOG0298|consensus
Probab=87.15 E-value=0.2 Score=55.35 Aligned_cols=41 Identities=29% Similarity=0.579 Sum_probs=35.9
Q ss_pred cccccccccc-CceeeCCCCeecHhhHHHHhccCCCccccccc
Q psy9201 201 LCKICAENDK-DIRIEPCGHLLCTPCLTSWQVSNRSRILFYLF 242 (264)
Q Consensus 201 lC~ICle~~k-dpvitpCGH~FC~~CI~~wl~s~~~~CP~CR~ 242 (264)
.|.||.+..+ .-.+..|||-+|..|...|+.. +..||.|+.
T Consensus 1155 ~c~ic~dil~~~~~I~~cgh~~c~~c~~~~l~~-~s~~~~~ks 1196 (1394)
T KOG0298|consen 1155 VCEICLDILRNQGGIAGCGHEPCCRCDELWLYA-SSRCPICKS 1196 (1394)
T ss_pred chHHHHHHHHhcCCeeeechhHhhhHHHHHHHH-hccCcchhh
Confidence 6999999988 5678899999999999999974 458999974
No 99
>COG0068 HypF Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones]
Probab=86.00 E-value=0.38 Score=50.51 Aligned_cols=126 Identities=22% Similarity=0.292 Sum_probs=66.5
Q ss_pred hhhhhhhhhhcccccccccCCcceeeccCCCchHHHHHhccccccchhhHHHHHHHhcCCCCCCCCCCccccccCCCccc
Q psy9201 102 YVFRLSCTRLGQWAIGYVTADGDILQTIPQNKSLCQALLDGYREGLSGLIYSILRSYLYPDGRNVNPELSWEFISTPEDH 181 (264)
Q Consensus 102 ~~f~~s~~rlgqw~ig~vs~d~~~~qtIp~nksl~qALLdg~Reg~s~i~~~ll~~yl~Pdgr~~npdls~l~~~~~e~~ 181 (264)
||+|+ +.++| +.|||.-||+-|+-+ +++.+++.. -|-..+++...|..+-.+-+..+.....+. .
T Consensus 17 FVyrl-A~~~~--L~G~V~N~g~gVeI~----------v~~~~~~~e-~Fi~~L~~~~PPLarI~~~~i~~~~~~~f~-~ 81 (750)
T COG0068 17 FVYRL-AQKLG--LKGYVRNDGDGVEIV----------LEGDEENLE-EFLNRLKKEKPPLARIEKVEIEEISESGFT-D 81 (750)
T ss_pred HHHHH-HHHcC--CceEEecCCCeEEEE----------EecCcccHH-HHHHHHhhcCCchhhhhhhhccccccccCC-c
Confidence 34443 34556 579998888776433 344332221 112344556677776555544443322121 1
Q ss_pred ccccHH--HHHHHHhhCCcccccccccccccCc----------eeeCCCCee--------------------cHhhHHHH
Q psy9201 182 IKVTQE--QYELYCEMGSTFQLCKICAENDKDI----------RIEPCGHLL--------------------CTPCLTSW 229 (264)
Q Consensus 182 i~vtqE--q~e~~~e~~st~elC~ICle~~kdp----------vitpCGH~F--------------------C~~CI~~w 229 (264)
..+.++ ..+....+..+...|.-|++..-|| ..|.||.+| |..|..++
T Consensus 82 F~I~~S~~~~~~~~~I~pD~a~C~~Cl~Ei~dp~~rrY~YPF~~CT~CGPRfTIi~alPYDR~nTsM~~F~lC~~C~~EY 161 (750)
T COG0068 82 FRIRKSEGKGNKNTQIPPDAATCEDCLEEIFDPNSRRYLYPFINCTNCGPRFTIIEALPYDRENTSMADFPLCPFCDKEY 161 (750)
T ss_pred eEEEecCCCCCcccccCCchhhhHHHHHHhcCCCCcceeccccccCCCCcceeeeccCCCCcccCccccCcCCHHHHHHh
Confidence 222222 1111123344455688888866553 467787764 88888887
Q ss_pred hccC-------CCccccccc
Q psy9201 230 QVSN-------RSRILFYLF 242 (264)
Q Consensus 230 l~s~-------~~~CP~CR~ 242 (264)
.... .-.||.|.=
T Consensus 162 ~dP~nRRfHAQp~aCp~CGP 181 (750)
T COG0068 162 KDPLNRRFHAQPIACPKCGP 181 (750)
T ss_pred cCccccccccccccCcccCC
Confidence 6521 237888854
No 100
>KOG1940|consensus
Probab=85.97 E-value=0.4 Score=45.14 Aligned_cols=41 Identities=22% Similarity=0.425 Sum_probs=35.2
Q ss_pred ccccccccc----cCceeeCCCCeecHhhHHHHhccCCCccccccc
Q psy9201 201 LCKICAEND----KDIRIEPCGHLLCTPCLTSWQVSNRSRILFYLF 242 (264)
Q Consensus 201 lC~ICle~~----kdpvitpCGH~FC~~CI~~wl~s~~~~CP~CR~ 242 (264)
-|+||.+.. .++...+|||....+|..+....+ -.||.|.+
T Consensus 160 ncPic~e~l~~s~~~~~~~~CgH~~h~~cf~e~~~~~-y~CP~C~~ 204 (276)
T KOG1940|consen 160 NCPICKEYLFLSFEDAGVLKCGHYMHSRCFEEMICEG-YTCPICSK 204 (276)
T ss_pred CCchhHHHhccccccCCccCcccchHHHHHHHHhccC-CCCCcccc
Confidence 499999955 357889999999999999988766 79999988
No 101
>KOG2114|consensus
Probab=84.38 E-value=0.7 Score=49.39 Aligned_cols=39 Identities=21% Similarity=0.255 Sum_probs=31.9
Q ss_pred ccccccccccCc-eeeCCCCeecHhhHHHHhccCCCcccccccc
Q psy9201 201 LCKICAENDKDI-RIEPCGHLLCTPCLTSWQVSNRSRILFYLFY 243 (264)
Q Consensus 201 lC~ICle~~kdp-vitpCGH~FC~~CI~~wl~s~~~~CP~CR~~ 243 (264)
.|..|.....-| |--.|||.|+.+|+. .+...||.|+.+
T Consensus 842 kCs~C~~~LdlP~VhF~CgHsyHqhC~e----~~~~~CP~C~~e 881 (933)
T KOG2114|consen 842 KCSACEGTLDLPFVHFLCGHSYHQHCLE----DKEDKCPKCLPE 881 (933)
T ss_pred eecccCCccccceeeeecccHHHHHhhc----cCcccCCccchh
Confidence 599999988866 456899999999997 234589999873
No 102
>KOG1952|consensus
Probab=83.45 E-value=0.91 Score=48.59 Aligned_cols=44 Identities=25% Similarity=0.392 Sum_probs=33.6
Q ss_pred ccccccccccC--ce--eeCCCCeecHhhHHHHhccC------CCccccccccc
Q psy9201 201 LCKICAENDKD--IR--IEPCGHLLCTPCLTSWQVSN------RSRILFYLFYF 244 (264)
Q Consensus 201 lC~ICle~~kd--pv--itpCGH~FC~~CI~~wl~s~------~~~CP~CR~~i 244 (264)
.|.||.+..+. ++ ...|-|+|...||.+|..+. .=.||.|+...
T Consensus 193 eCmIC~e~I~~t~~~WSC~sCYhVFHl~CI~~WArs~ek~~~~~WrCP~Cqsv~ 246 (950)
T KOG1952|consen 193 ECMICTERIKRTAPVWSCKSCYHVFHLNCIKKWARSSEKTGQDGWRCPACQSVS 246 (950)
T ss_pred EEEEeeeeccccCCceecchhhhhhhHHHHHHHHHHhhhccCccccCCcccchh
Confidence 59999997763 33 34699999999999998642 23799998543
No 103
>KOG3161|consensus
Probab=82.76 E-value=0.43 Score=49.73 Aligned_cols=37 Identities=24% Similarity=0.477 Sum_probs=28.9
Q ss_pred cccccccccc----CceeeCCCCeecHhhHHHHhccCCCcccccc
Q psy9201 201 LCKICAENDK----DIRIEPCGHLLCTPCLTSWQVSNRSRILFYL 241 (264)
Q Consensus 201 lC~ICle~~k----dpvitpCGH~FC~~CI~~wl~s~~~~CP~CR 241 (264)
.|.||...+- .||.+.|||..|..|++..- ..+|| |.
T Consensus 13 ~c~ic~n~f~~~~~~Pvsl~cghtic~~c~~~ly---n~scp-~~ 53 (861)
T KOG3161|consen 13 LCDICLNLFVVQRLEPVSLQCGHTICGHCVQLLY---NASCP-TK 53 (861)
T ss_pred hchHHHHHHHHHhcCcccccccchHHHHHHHhHh---hccCC-CC
Confidence 6999966543 58999999999999998753 35788 53
No 104
>KOG3113|consensus
Probab=82.69 E-value=1 Score=42.32 Aligned_cols=51 Identities=14% Similarity=0.150 Sum_probs=41.6
Q ss_pred ccccccccccC----ceeeCCCCeecHhhHHHHhccCCCcccccccccccccceeccc
Q psy9201 201 LCKICAENDKD----IRIEPCGHLLCTPCLTSWQVSNRSRILFYLFYFFSVKEIPLWT 254 (264)
Q Consensus 201 lC~ICle~~kd----pvitpCGH~FC~~CI~~wl~s~~~~CP~CR~~i~~~~vipl~~ 254 (264)
+|+|-.-.+.. ..+.+|||+|-.+-+++.- ...|+.|...+...++|.+-+
T Consensus 113 iCPvtgleMng~~~F~~l~~CGcV~SerAlKeik---as~C~~C~a~y~~~dvIvlNg 167 (293)
T KOG3113|consen 113 ICPVTGLEMNGKYRFCALRCCGCVFSERALKEIK---ASVCHVCGAAYQEDDVIVLNG 167 (293)
T ss_pred ecccccceecceEEEEEEeccceeccHHHHHHhh---hccccccCCcccccCeEeeCC
Confidence 69987665544 5688999999998888764 358999999999999998876
No 105
>COG5183 SSM4 Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=82.68 E-value=0.78 Score=49.07 Aligned_cols=52 Identities=21% Similarity=0.471 Sum_probs=39.5
Q ss_pred Ccccccccccccc--cCceeeCCCCe-----ecHhhHHHHhc-cCCCccccccccccccc
Q psy9201 197 STFQLCKICAEND--KDIRIEPCGHL-----LCTPCLTSWQV-SNRSRILFYLFYFFSVK 248 (264)
Q Consensus 197 st~elC~ICle~~--kdpvitpCGH~-----FC~~CI~~wl~-s~~~~CP~CR~~i~~~~ 248 (264)
.+.+.|.||+... .+|-.-||... .+..|+.+|+. +...+|-.|+.+++-++
T Consensus 10 ~d~~~CRICr~e~~~d~pLfhPCKC~GSIkYiH~eCL~eW~~~s~~~kCdiChy~~~Fk~ 69 (1175)
T COG5183 10 EDKRSCRICRTEDIRDDPLFHPCKCSGSIKYIHRECLMEWMECSGTKKCDICHYEYKFKD 69 (1175)
T ss_pred ccchhceeecCCCCCCCcCcccccccchhHHHHHHHHHHHHhcCCCcceeeecceeeeee
Confidence 3345799998744 46878888764 58999999997 45678999998876654
No 106
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=82.34 E-value=1.7 Score=29.76 Aligned_cols=39 Identities=15% Similarity=0.273 Sum_probs=20.4
Q ss_pred cccccccccCceee---CCCCeecHhhHHHHhccCC-Cccccc
Q psy9201 202 CKICAENDKDIRIE---PCGHLLCTPCLTSWQVSNR-SRILFY 240 (264)
Q Consensus 202 C~ICle~~kdpvit---pCGH~FC~~CI~~wl~s~~-~~CP~C 240 (264)
|.+|.+....-+.= .|+=.++..|+..++..+. ..||.|
T Consensus 1 C~~C~~iv~~G~~C~~~~C~~r~H~~C~~~y~r~~~~~~CP~C 43 (43)
T PF08746_consen 1 CEACKEIVTQGQRCSNRDCNVRLHDDCFKKYFRHRSNPKCPNC 43 (43)
T ss_dssp -TTT-SB-SSSEE-SS--S--EE-HHHHHHHTTT-SS-B-TTT
T ss_pred CcccchhHeeeccCCCCccCchHHHHHHHHHHhcCCCCCCcCC
Confidence 56777755543332 4888899999999887543 369987
No 107
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=82.07 E-value=1.2 Score=31.73 Aligned_cols=43 Identities=28% Similarity=0.415 Sum_probs=24.5
Q ss_pred ccccccccccCceeeCCC-CeecHhhHHHHhccCCCccccccccccc
Q psy9201 201 LCKICAENDKDIRIEPCG-HLLCTPCLTSWQVSNRSRILFYLFYFFS 246 (264)
Q Consensus 201 lC~ICle~~kdpvitpCG-H~FC~~CI~~wl~s~~~~CP~CR~~i~~ 246 (264)
.|+-|.-..+.- ..|. |-.|..|+...+. .+..||+|..+++.
T Consensus 4 nCKsCWf~~k~L--i~C~dHYLCl~CLt~ml~-~s~~C~iC~~~LPt 47 (50)
T PF03854_consen 4 NCKSCWFANKGL--IKCSDHYLCLNCLTLMLS-RSDRCPICGKPLPT 47 (50)
T ss_dssp ---SS-S--SSE--EE-SS-EEEHHHHHHT-S-SSSEETTTTEE---
T ss_pred cChhhhhcCCCe--eeecchhHHHHHHHHHhc-cccCCCcccCcCcc
Confidence 478887766653 4565 7789999999886 45689999988764
No 108
>KOG1428|consensus
Probab=81.22 E-value=0.7 Score=52.36 Aligned_cols=49 Identities=12% Similarity=0.146 Sum_probs=35.8
Q ss_pred cccccccccccc---CceeeCCCCeecHhhHHHHhc-----cC----CCcccccccccccc
Q psy9201 199 FQLCKICAENDK---DIRIEPCGHLLCTPCLTSWQV-----SN----RSRILFYLFYFFSV 247 (264)
Q Consensus 199 ~elC~ICle~~k---dpvitpCGH~FC~~CI~~wl~-----s~----~~~CP~CR~~i~~~ 247 (264)
.+.|-||....- ..+.+.|+|.|+..|...-+. ++ -..||.|+.++...
T Consensus 3486 DDmCmICFTE~L~AAP~IqL~C~HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~InH~ 3546 (3738)
T KOG1428|consen 3486 DDMCMICFTEALSAAPAIQLDCSHIFHLQCCRRVLENRWLGPRITFGFISCPICKNKINHI 3546 (3738)
T ss_pred CceEEEEehhhhCCCcceecCCccchhHHHHHHHHHhcccCCeeEEeeeecccccchhhhH
Confidence 447899987432 356789999999999875443 22 24899999988764
No 109
>KOG1812|consensus
Probab=80.51 E-value=0.71 Score=45.11 Aligned_cols=56 Identities=23% Similarity=0.396 Sum_probs=36.1
Q ss_pred cccccccccccC----ceeeCCCCeecHhhHHHHhc-----cCCCcccc--cccccccccceeccch
Q psy9201 200 QLCKICAENDKD----IRIEPCGHLLCTPCLTSWQV-----SNRSRILF--YLFYFFSVKEIPLWTP 255 (264)
Q Consensus 200 elC~ICle~~kd----pvitpCGH~FC~~CI~~wl~-----s~~~~CP~--CR~~i~~~~vipl~~~ 255 (264)
+.|.||...... -....|+|.||..|+.+.+. .....||. |...+.......+.++
T Consensus 147 ~~C~iC~~e~~~~~~~f~~~~C~H~fC~~C~k~~iev~~~~~~~~~C~~~~C~~~l~~~~c~~llt~ 213 (384)
T KOG1812|consen 147 EECGICFVEDPEAEDMFSVLKCGHRFCKDCVKQHIEVKLLSGTVIRCPHDGCESRLTLESCRKLLTP 213 (384)
T ss_pred ccCccCccccccHhhhHHHhcccchhhhHHhHHHhhhhhccCCCccCCCCCCCccCCHHHHhhhcCH
Confidence 369999943322 23678999999999998776 22356763 5555555555444444
No 110
>KOG2034|consensus
Probab=80.09 E-value=0.71 Score=49.48 Aligned_cols=35 Identities=23% Similarity=0.511 Sum_probs=26.9
Q ss_pred Cccccccccccccc--CceeeCCCCeecHhhHHHHhc
Q psy9201 197 STFQLCKICAENDK--DIRIEPCGHLLCTPCLTSWQV 231 (264)
Q Consensus 197 st~elC~ICle~~k--dpvitpCGH~FC~~CI~~wl~ 231 (264)
...+.|.+|....- .-.+-||||.|++.|+.+...
T Consensus 815 ep~d~C~~C~~~ll~~pF~vf~CgH~FH~~Cl~~~v~ 851 (911)
T KOG2034|consen 815 EPQDSCDHCGRPLLIKPFYVFPCGHCFHRDCLIRHVL 851 (911)
T ss_pred cCccchHHhcchhhcCcceeeeccchHHHHHHHHHHH
Confidence 34557999998553 456789999999999987643
No 111
>KOG1815|consensus
Probab=75.71 E-value=1.3 Score=43.68 Aligned_cols=55 Identities=24% Similarity=0.334 Sum_probs=39.8
Q ss_pred ccccccccccC-ceeeCCCCeecHhhHHHHhccC-----C--Ccc--cccccccccccceeccch
Q psy9201 201 LCKICAENDKD-IRIEPCGHLLCTPCLTSWQVSN-----R--SRI--LFYLFYFFSVKEIPLWTP 255 (264)
Q Consensus 201 lC~ICle~~kd-pvitpCGH~FC~~CI~~wl~s~-----~--~~C--P~CR~~i~~~~vipl~~~ 255 (264)
.|.||.+...+ .....|||.||..|....++.. . -+| +-|+..+..+.+..+-++
T Consensus 72 ~c~ic~~~~~~~~~~~~c~H~~c~~cw~~yl~~kI~~~~~~~i~cp~~~C~a~v~~~~i~~~~s~ 136 (444)
T KOG1815|consen 72 QCGICVESYDGEIIGLGCGHPFCPPCWTGYLGTKIHEGEEAKIKCPAHGCPALVGEDTVEKLVSD 136 (444)
T ss_pred cCCcccCCCcchhhhcCCCcHHHHHHHHHHhhheeeccccccccCCCCCccccCCCceeeeecCC
Confidence 59999998885 8888999999999999987621 1 145 456666666555555444
No 112
>KOG3268|consensus
Probab=74.02 E-value=2 Score=38.62 Aligned_cols=46 Identities=24% Similarity=0.387 Sum_probs=33.2
Q ss_pred ccccccccccC-----ce--eeCCCCeecHhhHHHHhc----cCC------Cccccccccccc
Q psy9201 201 LCKICAENDKD-----IR--IEPCGHLLCTPCLTSWQV----SNR------SRILFYLFYFFS 246 (264)
Q Consensus 201 lC~ICle~~kd-----pv--itpCGH~FC~~CI~~wl~----s~~------~~CP~CR~~i~~ 246 (264)
-|.||....-+ .+ -..||.-|+.-|+.+|+. ++. ..||.|..++.-
T Consensus 167 ~cgicyayqldGTipDqtCdN~qCgkpFHqiCL~dWLRgilTsRQSFdiiFGeCPYCS~Pial 229 (234)
T KOG3268|consen 167 ACGICYAYQLDGTIPDQTCDNIQCGKPFHQICLTDWLRGILTSRQSFDIIFGECPYCSDPIAL 229 (234)
T ss_pred cccceeeeecCCccccccccccccCCcHHHHHHHHHHHHHhhccceeeeeeccCCCCCCccee
Confidence 49999874332 22 347999999999999986 221 489999887653
No 113
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=72.79 E-value=3 Score=32.54 Aligned_cols=49 Identities=18% Similarity=0.391 Sum_probs=21.1
Q ss_pred cccccccccccC-------ceeeCCCCeecHhhHHHHhccCCCccccccccccccc
Q psy9201 200 QLCKICAENDKD-------IRIEPCGHLLCTPCLTSWQVSNRSRILFYLFYFFSVK 248 (264)
Q Consensus 200 elC~ICle~~kd-------pvitpCGH~FC~~CI~~wl~s~~~~CP~CR~~i~~~~ 248 (264)
..|.||-+..-- +..-.|+--.|..|..-=.+.+.+.||-|+...+..+
T Consensus 10 qiCqiCGD~VGl~~~Ge~FVAC~eC~fPvCr~CyEYErkeg~q~CpqCkt~ykr~k 65 (80)
T PF14569_consen 10 QICQICGDDVGLTENGEVFVACHECAFPVCRPCYEYERKEGNQVCPQCKTRYKRHK 65 (80)
T ss_dssp -B-SSS--B--B-SSSSB--S-SSS-----HHHHHHHHHTS-SB-TTT--B----T
T ss_pred cccccccCccccCCCCCEEEEEcccCCccchhHHHHHhhcCcccccccCCCccccc
Confidence 369999985432 2345788889999997655567789999998876543
No 114
>KOG4185|consensus
Probab=72.31 E-value=0.59 Score=43.05 Aligned_cols=43 Identities=23% Similarity=0.494 Sum_probs=34.6
Q ss_pred cccccccccc------CceeeC--------CCCeecHhhHHHHhccCCCcccccccc
Q psy9201 201 LCKICAENDK------DIRIEP--------CGHLLCTPCLTSWQVSNRSRILFYLFY 243 (264)
Q Consensus 201 lC~ICle~~k------dpvitp--------CGH~FC~~CI~~wl~s~~~~CP~CR~~ 243 (264)
.|.||..... .|.+.. |||..|..|+..-+......||+|+..
T Consensus 209 ~c~ic~~~~~~n~~~~~p~vl~~~~~~~~~c~htlc~~c~~~~l~~~~~~cp~~~~~ 265 (296)
T KOG4185|consen 209 LCEICERIYSENDEKLAPLVLSLSRLKEKIEGHTLCKECIDTILLQAGIKCPFCTWS 265 (296)
T ss_pred HHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHhcchHHHHHHhhhcCCcccce
Confidence 5999988665 256666 999999999998876555899999874
No 115
>KOG3579|consensus
Probab=70.07 E-value=2.5 Score=40.37 Aligned_cols=32 Identities=28% Similarity=0.666 Sum_probs=27.4
Q ss_pred cccccccccccCceeeCC----CCeecHhhHHHHhc
Q psy9201 200 QLCKICAENDKDIRIEPC----GHLLCTPCLTSWQV 231 (264)
Q Consensus 200 elC~ICle~~kdpvitpC----GH~FC~~CI~~wl~ 231 (264)
..|.+|.|++.|.-.+.| .|.||..|-.+-++
T Consensus 269 LcCTLC~ERLEDTHFVQCPSVp~HKFCFPCSResIK 304 (352)
T KOG3579|consen 269 LCCTLCHERLEDTHFVQCPSVPSHKFCFPCSRESIK 304 (352)
T ss_pred eeehhhhhhhccCceeecCCCcccceecccCHHHHH
Confidence 369999999999877777 69999999988776
No 116
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=68.28 E-value=1.6 Score=40.55 Aligned_cols=43 Identities=19% Similarity=0.377 Sum_probs=21.8
Q ss_pred cccccccccccCceeeCC---C--CeecHhhHHHHhccCCCcccccccc
Q psy9201 200 QLCKICAENDKDIRIEPC---G--HLLCTPCLTSWQVSNRSRILFYLFY 243 (264)
Q Consensus 200 elC~ICle~~kdpvitpC---G--H~FC~~CI~~wl~s~~~~CP~CR~~ 243 (264)
..||||-..+.-.++..= | |.+|.-|-.+|-..+ ..||.|...
T Consensus 173 g~CPvCGs~P~~s~l~~~~~~G~R~L~Cs~C~t~W~~~R-~~Cp~Cg~~ 220 (290)
T PF04216_consen 173 GYCPVCGSPPVLSVLRGGEREGKRYLHCSLCGTEWRFVR-IKCPYCGNT 220 (290)
T ss_dssp SS-TTT---EEEEEEE------EEEEEETTT--EEE--T-TS-TTT---
T ss_pred CcCCCCCCcCceEEEecCCCCccEEEEcCCCCCeeeecC-CCCcCCCCC
Confidence 369999998776555544 4 568999999997654 479999764
No 117
>KOG0825|consensus
Probab=66.17 E-value=2.9 Score=44.86 Aligned_cols=44 Identities=18% Similarity=0.264 Sum_probs=29.3
Q ss_pred ccccccccccC----ceeeCCCCeecHhhHHHHhc-----cCCCccccccccc
Q psy9201 201 LCKICAENDKD----IRIEPCGHLLCTPCLTSWQV-----SNRSRILFYLFYF 244 (264)
Q Consensus 201 lC~ICle~~kd----pvitpCGH~FC~~CI~~wl~-----s~~~~CP~CR~~i 244 (264)
.|.+|.....| -.+..|+|.+|..||..|.. ...-.|++|..-|
T Consensus 101 ~C~~E~S~~~ds~~i~P~~~~~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci 153 (1134)
T KOG0825|consen 101 VCEKEHSPDVDSSNICPVQTHVENQCPNCLKSCNDQLEESEKHTAHYFCEECV 153 (1134)
T ss_pred hhheecCCcccccCcCchhhhhhhhhhHHHHHHHHHhhccccccccccHHHHh
Confidence 46666665222 22345999999999999975 2234788886543
No 118
>PF10235 Cript: Microtubule-associated protein CRIPT; InterPro: IPR019367 The CRIPT protein is a cytoskeletal protein involved in microtubule production. This C-terminal domain is essential for binding to the PDZ3 domain of the SAP90 protein, one of a super-family of PDZ-containing proteins that play an important role in coupling the membrane ion channels with their signalling partners [].
Probab=66.09 E-value=3.9 Score=32.58 Aligned_cols=39 Identities=18% Similarity=0.339 Sum_probs=29.8
Q ss_pred ccccccccccccCceeeCCCCeecHhhHHHHhccCCCcccccccccccc
Q psy9201 199 FQLCKICAENDKDIRIEPCGHLLCTPCLTSWQVSNRSRILFYLFYFFSV 247 (264)
Q Consensus 199 ~elC~ICle~~kdpvitpCGH~FC~~CI~~wl~s~~~~CP~CR~~i~~~ 247 (264)
+..|.||......+ ||.||..|.. ....|.+|.+.+.+.
T Consensus 44 ~~~C~~CK~~v~q~-----g~~YCq~CAY-----kkGiCamCGKki~dt 82 (90)
T PF10235_consen 44 SSKCKICKTKVHQP-----GAKYCQTCAY-----KKGICAMCGKKILDT 82 (90)
T ss_pred CccccccccccccC-----CCccChhhhc-----ccCcccccCCeeccc
Confidence 34699999876655 8999999963 345899999887543
No 119
>PLN02195 cellulose synthase A
Probab=66.02 E-value=5.4 Score=43.57 Aligned_cols=55 Identities=20% Similarity=0.282 Sum_probs=39.5
Q ss_pred Cccccccccccccc-----C--ceeeCCCCeecHhhHHHHhccCCCccccccccccccccee
Q psy9201 197 STFQLCKICAENDK-----D--IRIEPCGHLLCTPCLTSWQVSNRSRILFYLFYFFSVKEIP 251 (264)
Q Consensus 197 st~elC~ICle~~k-----d--pvitpCGH~FC~~CI~~wl~s~~~~CP~CR~~i~~~~vip 251 (264)
+..+.|.||-+... + +..-.||--.|.+|.+-=.+.+++.||-|+...++++.+.
T Consensus 4 ~~~~~c~~cgd~~~~~~~g~~fvaC~eC~~pvCrpCyeyer~eg~q~CpqCkt~Yk~~~~~~ 65 (977)
T PLN02195 4 SGAPICATCGEEVGVDSNGEAFVACHECSYPLCKACLEYEIKEGRKVCLRCGGPYDAENVFD 65 (977)
T ss_pred CCCccceecccccCcCCCCCeEEEeccCCCccccchhhhhhhcCCccCCccCCccccccccc
Confidence 44457999998443 1 4566899999999996444456789999999888544433
No 120
>KOG3842|consensus
Probab=62.64 E-value=6.8 Score=38.15 Aligned_cols=50 Identities=16% Similarity=0.339 Sum_probs=33.1
Q ss_pred ccccccccccccC-------------------ceeeCCCCeecHhhHHHHhccC--------CCccccccccccccc
Q psy9201 199 FQLCKICAENDKD-------------------IRIEPCGHLLCTPCLTSWQVSN--------RSRILFYLFYFFSVK 248 (264)
Q Consensus 199 ~elC~ICle~~kd-------------------pvitpCGH~FC~~CI~~wl~s~--------~~~CP~CR~~i~~~~ 248 (264)
...|++|+..-.- -...||||+.-..=..-|.... ...||+|-..+..++
T Consensus 341 ~r~CPmC~~~gp~V~L~lG~E~~f~vD~G~pthaF~PCGHv~sekt~~YWs~iplPhGT~~f~a~CPFC~~~L~ge~ 417 (429)
T KOG3842|consen 341 ERECPMCRVVGPYVPLWLGCEAGFYVDAGPPTHAFNPCGHVCSEKTVKYWSQIPLPHGTHAFHAACPFCATQLAGEQ 417 (429)
T ss_pred cCcCCeeeeecceeeeeccccceeEecCCCcccccCCcccccchhhhhHhhcCcCCCccccccccCcchhhhhccCC
Confidence 3469999985431 1347999976666666676421 358999988775543
No 121
>KOG0802|consensus
Probab=62.61 E-value=2 Score=43.53 Aligned_cols=47 Identities=26% Similarity=0.574 Sum_probs=36.2
Q ss_pred cccccccccccCceeeCCCCeecHhhHHHHhccCCCccccccccccccccee
Q psy9201 200 QLCKICAENDKDIRIEPCGHLLCTPCLTSWQVSNRSRILFYLFYFFSVKEIP 251 (264)
Q Consensus 200 elC~ICle~~kdpvitpCGH~FC~~CI~~wl~s~~~~CP~CR~~i~~~~vip 251 (264)
..|.+|.+.. ..++++|.| ..|+.+|+..+ ..||.|++....++...
T Consensus 480 ~~~~~~~~~~-~~~~~~~~~---~~~l~~~~~~~-~~~pl~~~~~~~~~~~~ 526 (543)
T KOG0802|consen 480 DVCAICYQEM-SARITPCSH---ALCLRKWLYVQ-EVCPLCHTYMKEDDFLS 526 (543)
T ss_pred CcchHHHHHH-Hhccccccc---hhHHHhhhhhc-cccCCCchhhhcccccC
Confidence 3599999988 777888885 77888888754 48999998877665443
No 122
>PLN02189 cellulose synthase
Probab=61.90 E-value=5.4 Score=43.82 Aligned_cols=47 Identities=19% Similarity=0.432 Sum_probs=35.2
Q ss_pred cccccccccccC-------ceeeCCCCeecHhhHHHHhccCCCccccccccccc
Q psy9201 200 QLCKICAENDKD-------IRIEPCGHLLCTPCLTSWQVSNRSRILFYLFYFFS 246 (264)
Q Consensus 200 elC~ICle~~kd-------pvitpCGH~FC~~CI~~wl~s~~~~CP~CR~~i~~ 246 (264)
+.|.||-++... +..-.||--.|..|.+-=.+.+++.||-|+...+.
T Consensus 35 ~~C~iCgd~vg~~~~g~~fvaC~~C~fpvCr~Cyeyer~eg~q~CpqCkt~Y~r 88 (1040)
T PLN02189 35 QVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERREGTQNCPQCKTRYKR 88 (1040)
T ss_pred ccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchhh
Confidence 379999997431 33456888899999965445567899999988774
No 123
>KOG3053|consensus
Probab=59.49 E-value=4.2 Score=38.36 Aligned_cols=44 Identities=25% Similarity=0.554 Sum_probs=33.1
Q ss_pred ccccccccccCce----eeCCC-----CeecHhhHHHHhccC-------CCccccccccc
Q psy9201 201 LCKICAENDKDIR----IEPCG-----HLLCTPCLTSWQVSN-------RSRILFYLFYF 244 (264)
Q Consensus 201 lC~ICle~~kdpv----itpCG-----H~FC~~CI~~wl~s~-------~~~CP~CR~~i 244 (264)
.|-||....+|-. +-||- |-.+.+|+..|+... .-.||-|+.+.
T Consensus 22 ~CWiCF~TdeDn~~a~WV~PCrCRGt~KWVHqsCL~rWiDEK~~~n~~q~V~C~QCqTEY 81 (293)
T KOG3053|consen 22 CCWICFATDEDNRLAAWVHPCRCRGTTKWVHQSCLSRWIDEKQRGNPLQTVSCPQCQTEY 81 (293)
T ss_pred eEEEEeccCcccchhhhcccccccCccHHHHHHHHHHHHhHHhcCCCCceeechhhcchh
Confidence 6999999887743 45775 447899999998632 23899998864
No 124
>PLN02436 cellulose synthase A
Probab=58.79 E-value=6.6 Score=43.35 Aligned_cols=47 Identities=19% Similarity=0.444 Sum_probs=35.4
Q ss_pred ccccccccccc---C----ceeeCCCCeecHhhHHHHhccCCCccccccccccc
Q psy9201 200 QLCKICAENDK---D----IRIEPCGHLLCTPCLTSWQVSNRSRILFYLFYFFS 246 (264)
Q Consensus 200 elC~ICle~~k---d----pvitpCGH~FC~~CI~~wl~s~~~~CP~CR~~i~~ 246 (264)
+.|.||-++.. | +..-.||--.|..|.+-=.+..++.||-|++..+.
T Consensus 37 ~iCqICGD~Vg~t~dGe~FVACn~C~fpvCr~Cyeyer~eg~~~Cpqckt~Y~r 90 (1094)
T PLN02436 37 QTCQICGDEIELTVDGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKR 90 (1094)
T ss_pred ccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchhh
Confidence 36999999653 1 34556888899999965455567899999988774
No 125
>TIGR01562 FdhE formate dehydrogenase accessory protein FdhE. The only sequence scoring between trusted and noise is that from Aquifex aeolicus, which shows certain structural differences from the proteobacterial forms in the alignment. However it is notable that A. aeolicus also has a sequence scoring above trusted to the alpha subunit of formate dehydrogenase (TIGR01553).
Probab=58.58 E-value=3.2 Score=39.60 Aligned_cols=42 Identities=21% Similarity=0.434 Sum_probs=30.9
Q ss_pred ccccccccccCceee----CCC--CeecHhhHHHHhccCCCcccccccc
Q psy9201 201 LCKICAENDKDIRIE----PCG--HLLCTPCLTSWQVSNRSRILFYLFY 243 (264)
Q Consensus 201 lC~ICle~~kdpvit----pCG--H~FC~~CI~~wl~s~~~~CP~CR~~ 243 (264)
.|+||-..+.-.++. .=| +..|.-|-.+|-..+ ..||.|...
T Consensus 186 ~CPvCGs~P~~s~~~~~~~~~G~RyL~CslC~teW~~~R-~~C~~Cg~~ 233 (305)
T TIGR01562 186 LCPACGSPPVASMVRQGGKETGLRYLSCSLCATEWHYVR-VKCSHCEES 233 (305)
T ss_pred cCCCCCChhhhhhhcccCCCCCceEEEcCCCCCcccccC-ccCCCCCCC
Confidence 699999987644332 245 457999999997654 589999764
No 126
>PF07975 C1_4: TFIIH C1-like domain; InterPro: IPR004595 All proteins in this domain for which functions are known are components of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair. It includes the yeast transcription factor Ssl1 (Suppressor of stem-loop protein 1) that is essential for translation initiation and affects UV resistance. The C-terminal region is essential for transcription activity. This regions binds three zinc atoms through two independent domain. The first contains a C4 zinc finger motif, whereas the second is characterised by a CX(2)CX(2-4)FCADCD motif. The solution structure of the second C-terminal domain revealed homology with the regulatory domain of protein kinase C [].; GO: 0006281 DNA repair, 0005634 nucleus; PDB: 1Z60_A.
Probab=58.44 E-value=8.3 Score=27.63 Aligned_cols=27 Identities=11% Similarity=0.158 Sum_probs=15.3
Q ss_pred eeCCCCeecHhhHHHHhccCCCcccccc
Q psy9201 214 IEPCGHLLCTPCLTSWQVSNRSRILFYL 241 (264)
Q Consensus 214 itpCGH~FC~~CI~~wl~s~~~~CP~CR 241 (264)
-..|++.||.+|= -.+...-+.||-|.
T Consensus 24 C~~C~~~FC~dCD-~fiHE~LH~CPGC~ 50 (51)
T PF07975_consen 24 CPKCKNHFCIDCD-VFIHETLHNCPGCE 50 (51)
T ss_dssp -TTTT--B-HHHH-HTTTTTS-SSSTT-
T ss_pred CCCCCCccccCcC-hhhhccccCCcCCC
Confidence 3468999999993 34455557899984
No 127
>KOG0309|consensus
Probab=57.45 E-value=5.9 Score=42.44 Aligned_cols=37 Identities=24% Similarity=0.498 Sum_probs=28.2
Q ss_pred ccccccccc--CceeeCCCCeecHhhHHHHhccCCCcccc
Q psy9201 202 CKICAENDK--DIRIEPCGHLLCTPCLTSWQVSNRSRILF 239 (264)
Q Consensus 202 C~ICle~~k--dpvitpCGH~FC~~CI~~wl~s~~~~CP~ 239 (264)
|.+|.-... ..+...|||+++.+|..+|...+. .||.
T Consensus 1031 C~~C~l~V~gss~~Cg~C~Hv~H~sc~~eWf~~gd-~Cps 1069 (1081)
T KOG0309|consen 1031 CAICHLAVRGSSNFCGTCGHVGHTSCMMEWFRTGD-VCPS 1069 (1081)
T ss_pred eeeEeeEeeccchhhccccccccHHHHHHHHhcCC-cCCC
Confidence 777766443 245678999999999999998654 7874
No 128
>KOG2113|consensus
Probab=57.31 E-value=7 Score=37.95 Aligned_cols=41 Identities=2% Similarity=-0.352 Sum_probs=33.7
Q ss_pred cccccccccccCceeeCCCCe-ecHhhHHHHhccCCCcccccccc
Q psy9201 200 QLCKICAENDKDIRIEPCGHL-LCTPCLTSWQVSNRSRILFYLFY 243 (264)
Q Consensus 200 elC~ICle~~kdpvitpCGH~-FC~~CI~~wl~s~~~~CP~CR~~ 243 (264)
.+|..|-+..-.....+|||. ||..|... +-..+||.|...
T Consensus 344 ~~~~~~~~~~~st~~~~~~~n~~~~~~a~~---s~~~~~~~c~~~ 385 (394)
T KOG2113|consen 344 LKGTSAGFGLLSTIWSGGNMNLSPGSLASA---SASPTSSTCDHN 385 (394)
T ss_pred cccccccCceeeeEeecCCcccChhhhhhc---ccCCcccccccc
Confidence 369999999999999999996 89999872 345799999654
No 129
>KOG0289|consensus
Probab=56.80 E-value=6.2 Score=39.74 Aligned_cols=57 Identities=14% Similarity=0.211 Sum_probs=50.9
Q ss_pred ccccccccccCceeeC-CCCeecHhhHHHHhccCCCcccccccccccccceeccchhhh
Q psy9201 201 LCKICAENDKDIRIEP-CGHLLCTPCLTSWQVSNRSRILFYLFYFFSVKEIPLWTPTFV 258 (264)
Q Consensus 201 lC~ICle~~kdpvitp-CGH~FC~~CI~~wl~s~~~~CP~CR~~i~~~~vipl~~~~f~ 258 (264)
.|.|--|.+++||+.| -||+|=.+=|++.+.. ..+||+-..+++.++++++..++++
T Consensus 2 ~CaISgEvP~~PVvS~~Sg~vfEkrLIEqyI~e-~G~DPIt~~pLs~eelV~Ik~~~~v 59 (506)
T KOG0289|consen 2 VCAISGEVPEEPVVSPVSGHVFEKRLIEQYIAE-TGKDPITNEPLSIEELVEIKVPAQV 59 (506)
T ss_pred eecccCCCCCCccccccccchHHHHHHHHHHHH-cCCCCCCCCcCCHHHeeeccccccc
Confidence 5999999999998876 8999999999999874 4589999999999999999999884
No 130
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=52.78 E-value=9.7 Score=42.10 Aligned_cols=45 Identities=18% Similarity=0.457 Sum_probs=34.3
Q ss_pred ccccccccccC-------ceeeCCCCeecHhhHHHHhccCCCcccccccccc
Q psy9201 201 LCKICAENDKD-------IRIEPCGHLLCTPCLTSWQVSNRSRILFYLFYFF 245 (264)
Q Consensus 201 lC~ICle~~kd-------pvitpCGH~FC~~CI~~wl~s~~~~CP~CR~~i~ 245 (264)
.|.||-++..- +..-.||--.|.+|.+-=.+.+++.||-|+...+
T Consensus 19 iCqICGD~vg~~~~Ge~FVAC~eC~FPVCrpCYEYEr~eG~q~CPqCktrYk 70 (1079)
T PLN02638 19 VCQICGDNVGKTVDGEPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTKYK 70 (1079)
T ss_pred eeeecccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchh
Confidence 69999996431 4556788889999996434456789999998776
No 131
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=52.76 E-value=4.6 Score=40.08 Aligned_cols=47 Identities=17% Similarity=0.383 Sum_probs=0.0
Q ss_pred cccccccccccC-------------------ceeeCCCCeecHhhHHHHhccC--------CCccccccccccc
Q psy9201 200 QLCKICAENDKD-------------------IRIEPCGHLLCTPCLTSWQVSN--------RSRILFYLFYFFS 246 (264)
Q Consensus 200 elC~ICle~~kd-------------------pvitpCGH~FC~~CI~~wl~s~--------~~~CP~CR~~i~~ 246 (264)
..|++|+..-.- -...||||+.-.....-|-.-. ...||+|-.++..
T Consensus 329 r~CPlCr~~g~~V~L~mG~E~afyvD~~~pthaF~PCGHv~SekTa~yWs~i~lPhGt~~f~a~CPFCa~~L~g 402 (416)
T PF04710_consen 329 RTCPLCRQVGPYVPLWMGCEPAFYVDSGPPTHAFNPCGHVCSEKTAKYWSQIPLPHGTHAFHAACPFCATPLDG 402 (416)
T ss_dssp --------------------------------------------------------------------------
T ss_pred ccCCCccccCCceeEeeccccceeecCCCCceeecccccccchhhhhhhhcCCCCCCcccccccCCcccCcccC
Confidence 369999974321 2457999988778888886521 2489999888864
No 132
>KOG3842|consensus
Probab=52.34 E-value=6.2 Score=38.40 Aligned_cols=35 Identities=23% Similarity=0.417 Sum_probs=21.5
Q ss_pred eeeCCCCeecHhhHHHHhc-----cCCCcccccccccccccceecc
Q psy9201 213 RIEPCGHLLCTPCLTSWQV-----SNRSRILFYLFYFFSVKEIPLW 253 (264)
Q Consensus 213 vitpCGH~FC~~CI~~wl~-----s~~~~CP~CR~~i~~~~vipl~ 253 (264)
+-+.|||+-=. ..|=. .+.+.||+||..-. ++|+|
T Consensus 318 vYl~CGHV~G~---H~WG~~e~~g~~~r~CPmC~~~gp---~V~L~ 357 (429)
T KOG3842|consen 318 VYLNCGHVHGY---HNWGVRENTGQRERECPMCRVVGP---YVPLW 357 (429)
T ss_pred EEEeccccccc---cccccccccCcccCcCCeeeeecc---eeeee
Confidence 45799997321 12421 34579999987544 56666
No 133
>KOG0827|consensus
Probab=51.21 E-value=1.9 Score=42.67 Aligned_cols=46 Identities=22% Similarity=0.320 Sum_probs=38.4
Q ss_pred ccccccccccC----ceeeCCCCeecHhhHHHHhccCCCcccccccccccc
Q psy9201 201 LCKICAENDKD----IRIEPCGHLLCTPCLTSWQVSNRSRILFYLFYFFSV 247 (264)
Q Consensus 201 lC~ICle~~kd----pvitpCGH~FC~~CI~~wl~s~~~~CP~CR~~i~~~ 247 (264)
.|.||.+..+. ....-|||.....|+.+|+.+ .++||.|+..+...
T Consensus 198 sl~I~~~slK~~y~k~~~~~~g~~~~~~kL~k~L~~-~~kl~~~~rel~~~ 247 (465)
T KOG0827|consen 198 SLSICFESLKQNYDKISAIVCGHIYHHGKLSKWLAT-KRKLPSCRRELPKN 247 (465)
T ss_pred hhHhhHHHHHHHHHHHHHHhhcccchhhHHHHHHHH-HHHhHHHHhhhhhh
Confidence 49999987764 456789999999999999987 56899999887653
No 134
>PLN02400 cellulose synthase
Probab=50.48 E-value=9.8 Score=42.10 Aligned_cols=47 Identities=17% Similarity=0.408 Sum_probs=34.9
Q ss_pred cccccccccccC-------ceeeCCCCeecHhhHHHHhccCCCccccccccccc
Q psy9201 200 QLCKICAENDKD-------IRIEPCGHLLCTPCLTSWQVSNRSRILFYLFYFFS 246 (264)
Q Consensus 200 elC~ICle~~kd-------pvitpCGH~FC~~CI~~wl~s~~~~CP~CR~~i~~ 246 (264)
+.|.||-|+.-- +..-.||--.|..|.+-=.+.+.+.||-|+...+.
T Consensus 37 qiCqICGD~VG~t~dGe~FVAC~eCaFPVCRpCYEYERkeGnq~CPQCkTrYkR 90 (1085)
T PLN02400 37 QICQICGDDVGVTETGDVFVACNECAFPVCRPCYEYERKDGTQCCPQCKTRYRR 90 (1085)
T ss_pred ceeeecccccCcCCCCCEEEEEccCCCccccchhheecccCCccCcccCCcccc
Confidence 379999996432 44567888899999864334467799999988774
No 135
>KOG2231|consensus
Probab=49.29 E-value=11 Score=39.85 Aligned_cols=44 Identities=23% Similarity=0.450 Sum_probs=35.3
Q ss_pred cccccccccCceeeCCCC-eecHhhHHHHhcc-C----CCcccccccccc
Q psy9201 202 CKICAENDKDIRIEPCGH-LLCTPCLTSWQVS-N----RSRILFYLFYFF 245 (264)
Q Consensus 202 C~ICle~~kdpvitpCGH-~FC~~CI~~wl~s-~----~~~CP~CR~~i~ 245 (264)
|.||.....-+..-.||| ..|.+|....... . ...||.||..+.
T Consensus 3 c~ic~~s~~~~~~~s~~h~~v~~~~~~R~~~~~~~~~~~~~~~vcr~~~~ 52 (669)
T KOG2231|consen 3 CAICAFSPDFVGRGSCGHNEVCATCVVRLRFELNNRKCSNECPVCRREVE 52 (669)
T ss_pred cceeecCccccccccccccccchhhhhhhhhhcccccccccCccccccee
Confidence 999999999899999999 7999998775431 2 346799998654
No 136
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=47.68 E-value=13 Score=41.13 Aligned_cols=47 Identities=15% Similarity=0.395 Sum_probs=35.4
Q ss_pred cccccccccccC-------ceeeCCCCeecHhhHHHHhccCCCccccccccccc
Q psy9201 200 QLCKICAENDKD-------IRIEPCGHLLCTPCLTSWQVSNRSRILFYLFYFFS 246 (264)
Q Consensus 200 elC~ICle~~kd-------pvitpCGH~FC~~CI~~wl~s~~~~CP~CR~~i~~ 246 (264)
+.|.||-++... +..-.||--.|..|.+-=.+.+++.||.|+...+.
T Consensus 16 ~~c~iCGd~vg~~~~Ge~FVAC~eC~fpvCr~cyeye~~~g~~~cp~c~t~y~~ 69 (1044)
T PLN02915 16 KTCRVCGDEVGVKEDGQPFVACHVCGFPVCKPCYEYERSEGNQCCPQCNTRYKR 69 (1044)
T ss_pred chhhccccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchhh
Confidence 469999996432 34567888899999965445567899999988763
No 137
>KOG2113|consensus
Probab=47.51 E-value=6.1 Score=38.35 Aligned_cols=47 Identities=11% Similarity=-0.052 Sum_probs=36.6
Q ss_pred ccccccccccCceeeCCCC-eecHhhHHHHhccCCCcccccccccccc
Q psy9201 201 LCKICAENDKDIRIEPCGH-LLCTPCLTSWQVSNRSRILFYLFYFFSV 247 (264)
Q Consensus 201 lC~ICle~~kdpvitpCGH-~FC~~CI~~wl~s~~~~CP~CR~~i~~~ 247 (264)
.|.+|.++.--....+||| +||..|..+--.++.+.||+|...+...
T Consensus 138 ~~iqq~tnt~I~T~v~~~~~Vf~Vtg~~~nC~kra~s~eie~ta~~ra 185 (394)
T KOG2113|consen 138 KRIQQFTNTYIATPVRCGEPVFCVTGAPKNCVKRARSCEIEQTAVTRA 185 (394)
T ss_pred chheecccceEeeeccCCCceEEEecCCcchhhhccccchhhhhhhhh
Confidence 5899999887778889999 6999997665445667899997665443
No 138
>PRK03564 formate dehydrogenase accessory protein FdhE; Provisional
Probab=45.51 E-value=8.7 Score=36.81 Aligned_cols=42 Identities=21% Similarity=0.477 Sum_probs=30.7
Q ss_pred cccccccccccCceee---CCCC--eecHhhHHHHhccCCCccccccc
Q psy9201 200 QLCKICAENDKDIRIE---PCGH--LLCTPCLTSWQVSNRSRILFYLF 242 (264)
Q Consensus 200 elC~ICle~~kdpvit---pCGH--~FC~~CI~~wl~s~~~~CP~CR~ 242 (264)
..|++|-..+.-.++. .=|+ ..|.-|-.+|-..+ ..||.|..
T Consensus 188 ~~CPvCGs~P~~s~v~~~~~~G~RyL~CslC~teW~~~R-~~C~~Cg~ 234 (309)
T PRK03564 188 QFCPVCGSMPVSSVVQIGTTQGLRYLHCNLCESEWHVVR-VKCSNCEQ 234 (309)
T ss_pred CCCCCCCCcchhheeeccCCCCceEEEcCCCCCcccccC-ccCCCCCC
Confidence 4699999987644332 3454 57999999997654 58999975
No 139
>PF01363 FYVE: FYVE zinc finger; InterPro: IPR000306 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The FYVE zinc finger is named after four proteins that it has been found in: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two zinc ions []. The FYVE finger has eight potential zinc coordinating cysteine positions. Many members of this family also include two histidines in a motif R+HHC+XCG, where + represents a charged residue and X any residue. FYVE-type domains are divided into two known classes: FYVE domains that specifically bind to phosphatidylinositol 3-phosphate in lipid bilayers and FYVE-related domains of undetermined function []. Those that bind to phosphatidylinositol 3-phosphate are often found in proteins targeted to lipid membranes that are involved in regulating membrane traffic [, , ]. Most FYVE domains target proteins to endosomes by binding specifically to phosphatidylinositol-3-phosphate at the membrane surface. By contrast, the CARP2 FYVE-like domain is not optimized to bind to phosphoinositides or insert into lipid bilayers. FYVE domains are distinguished from other zinc fingers by three signature sequences: an N-terminal WxxD motif, a basic R(R/K)HHCR patch, and a C-terminal RVC motif. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding; PDB: 1HYI_A 1JOC_B 1HYJ_A 1DVP_A 3ZYQ_A 4AVX_A 1VFY_A 3T7L_A 1X4U_A 1WFK_A ....
Probab=45.27 E-value=2.7 Score=30.45 Aligned_cols=30 Identities=23% Similarity=0.667 Sum_probs=16.4
Q ss_pred ccccccccccCc----eeeCCCCeecHhhHHHHh
Q psy9201 201 LCKICAENDKDI----RIEPCGHLLCTPCLTSWQ 230 (264)
Q Consensus 201 lC~ICle~~kdp----vitpCGH~FC~~CI~~wl 230 (264)
.|.+|...+.-. ---.||++||..|.....
T Consensus 11 ~C~~C~~~F~~~~rrhhCr~CG~~vC~~Cs~~~~ 44 (69)
T PF01363_consen 11 NCMICGKKFSLFRRRHHCRNCGRVVCSSCSSQRI 44 (69)
T ss_dssp B-TTT--B-BSSS-EEE-TTT--EEECCCS-EEE
T ss_pred cCcCcCCcCCCceeeEccCCCCCEECCchhCCEE
Confidence 599999988532 245899999999987654
No 140
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=45.07 E-value=16 Score=25.56 Aligned_cols=42 Identities=17% Similarity=0.173 Sum_probs=20.1
Q ss_pred ccccccccccCce-eeCCCCeecHhhHHHHhc----cCCCcccccccc
Q psy9201 201 LCKICAENDKDIR-IEPCGHLLCTPCLTSWQV----SNRSRILFYLFY 243 (264)
Q Consensus 201 lC~ICle~~kdpv-itpCGH~FC~~CI~~wl~----s~~~~CP~CR~~ 243 (264)
.|++.....+.|+ -..|.|.-|-+ +..|+. .+.=.||.|.++
T Consensus 4 ~CPls~~~i~~P~Rg~~C~H~~CFD-l~~fl~~~~~~~~W~CPiC~~~ 50 (50)
T PF02891_consen 4 RCPLSFQRIRIPVRGKNCKHLQCFD-LESFLESNQRTPKWKCPICNKP 50 (50)
T ss_dssp B-TTTSSB-SSEEEETT--SS--EE-HHHHHHHHHHS---B-TTT---
T ss_pred eCCCCCCEEEeCccCCcCcccceEC-HHHHHHHhhccCCeECcCCcCc
Confidence 5999999888765 55799986643 344543 233479999763
No 141
>KOG1815|consensus
Probab=43.91 E-value=13 Score=36.80 Aligned_cols=19 Identities=26% Similarity=0.366 Sum_probs=15.2
Q ss_pred CceeeCCCCeecHhhHHHH
Q psy9201 211 DIRIEPCGHLLCTPCLTSW 229 (264)
Q Consensus 211 dpvitpCGH~FC~~CI~~w 229 (264)
..+.-.|||.||..|..+|
T Consensus 178 ~~v~C~~g~~FC~~C~~~~ 196 (444)
T KOG1815|consen 178 VEVDCGCGHEFCFACGEES 196 (444)
T ss_pred cceeCCCCchhHhhccccc
Confidence 4566789999999998776
No 142
>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=43.79 E-value=16 Score=35.57 Aligned_cols=51 Identities=12% Similarity=0.156 Sum_probs=35.6
Q ss_pred cccccccccc---CceeeCCCCeecHhhHHHHhccC--CCccccccccccccccee
Q psy9201 201 LCKICAENDK---DIRIEPCGHLLCTPCLTSWQVSN--RSRILFYLFYFFSVKEIP 251 (264)
Q Consensus 201 lC~ICle~~k---dpvitpCGH~FC~~CI~~wl~s~--~~~CP~CR~~i~~~~vip 251 (264)
.||+=.+.-. .|+.+.|||+.-..-+...-+++ .-+||.|-..-...+.+.
T Consensus 338 iCPVlKe~~t~ENpP~ml~CgHVIskeal~~LS~nG~~~FKCPYCP~~~~~~~~~r 393 (396)
T COG5109 338 ICPVLKELCTDENPPVMLECGHVISKEALSVLSQNGVLSFKCPYCPEMSKYENILR 393 (396)
T ss_pred eccccHhhhcccCCCeeeeccceeeHHHHHHHhhcCcEEeeCCCCCcchhhhhhhc
Confidence 5887555332 48899999999988887765543 348999976555544443
No 143
>KOG4718|consensus
Probab=43.77 E-value=12 Score=34.48 Aligned_cols=43 Identities=16% Similarity=0.294 Sum_probs=34.3
Q ss_pred ccccccccc-cCceeeCCCCeecHhhHHHHhccCCCccccccccc
Q psy9201 201 LCKICAEND-KDIRIEPCGHLLCTPCLTSWQVSNRSRILFYLFYF 244 (264)
Q Consensus 201 lC~ICle~~-kdpvitpCGH~FC~~CI~~wl~s~~~~CP~CR~~i 244 (264)
.|.+|.... .+.+.-.||-.+..+|++..+.. ...||.|..-.
T Consensus 183 ~Cn~Ch~LvIqg~rCg~c~i~~h~~c~qty~q~-~~~cphc~d~w 226 (235)
T KOG4718|consen 183 NCNLCHCLVIQGIRCGSCNIQYHRGCIQTYLQR-RDICPHCGDLW 226 (235)
T ss_pred HHhHhHHHhheeeccCcccchhhhHHHHHHhcc-cCcCCchhccc
Confidence 599999955 45667789888999999999876 56899996543
No 144
>cd00065 FYVE FYVE domain; Zinc-binding domain; targets proteins to membrane lipids via interaction with phosphatidylinositol-3-phosphate, PI3P; present in Fab1, YOTB, Vac1, and EEA1;
Probab=41.83 E-value=9.1 Score=26.46 Aligned_cols=31 Identities=19% Similarity=0.542 Sum_probs=22.7
Q ss_pred cccccccccc----CceeeCCCCeecHhhHHHHhc
Q psy9201 201 LCKICAENDK----DIRIEPCGHLLCTPCLTSWQV 231 (264)
Q Consensus 201 lC~ICle~~k----dpvitpCGH~FC~~CI~~wl~ 231 (264)
.|.+|...+. ......||++||..|......
T Consensus 4 ~C~~C~~~F~~~~rk~~Cr~Cg~~~C~~C~~~~~~ 38 (57)
T cd00065 4 SCMGCGKPFTLTRRRHHCRNCGRIFCSKCSSNRIP 38 (57)
T ss_pred cCcccCccccCCccccccCcCcCCcChHHcCCeee
Confidence 4888877554 344568999999999876544
No 145
>KOG1812|consensus
Probab=41.63 E-value=13 Score=36.33 Aligned_cols=33 Identities=27% Similarity=0.575 Sum_probs=23.2
Q ss_pred ccccccccc-----cCceeeCCCCeecHhhHHHHhccC
Q psy9201 201 LCKICAEND-----KDIRIEPCGHLLCTPCLTSWQVSN 233 (264)
Q Consensus 201 lC~ICle~~-----kdpvitpCGH~FC~~CI~~wl~s~ 233 (264)
.|+.|.-.. .+.+.-.|||.||..|...|...+
T Consensus 308 ~CpkC~~~ie~~~GCnhm~CrC~~~fcy~C~~~~~~~~ 345 (384)
T KOG1812|consen 308 QCPKCKFMIELSEGCNHMTCRCGHQFCYMCGGDWKTHN 345 (384)
T ss_pred cCcccceeeeecCCcceEEeeccccchhhcCcchhhCC
Confidence 477777642 233344499999999999997643
No 146
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=40.58 E-value=4.9 Score=30.66 Aligned_cols=39 Identities=15% Similarity=0.212 Sum_probs=21.9
Q ss_pred ccccccccccCceeeCCCCeecHhhHHHHhccCCCcccccccccc
Q psy9201 201 LCKICAENDKDIRIEPCGHLLCTPCLTSWQVSNRSRILFYLFYFF 245 (264)
Q Consensus 201 lC~ICle~~kdpvitpCGH~FC~~CI~~wl~s~~~~CP~CR~~i~ 245 (264)
.|+.|...+... . ||-.|..|-..... ...||.|..++.
T Consensus 3 ~CP~C~~~L~~~---~-~~~~C~~C~~~~~~--~a~CPdC~~~Le 41 (70)
T PF07191_consen 3 TCPKCQQELEWQ---G-GHYHCEACQKDYKK--EAFCPDCGQPLE 41 (70)
T ss_dssp B-SSS-SBEEEE---T-TEEEETTT--EEEE--EEE-TTT-SB-E
T ss_pred cCCCCCCccEEe---C-CEEECcccccccee--cccCCCcccHHH
Confidence 599998874422 2 78889999877543 357999987653
No 147
>KOG2068|consensus
Probab=39.69 E-value=20 Score=34.79 Aligned_cols=45 Identities=27% Similarity=0.381 Sum_probs=32.7
Q ss_pred cccccccccc--C--ceeeCCCCeecHhhHHHHhccCCCccccccccccc
Q psy9201 201 LCKICAENDK--D--IRIEPCGHLLCTPCLTSWQVSNRSRILFYLFYFFS 246 (264)
Q Consensus 201 lC~ICle~~k--d--pvitpCGH~FC~~CI~~wl~s~~~~CP~CR~~i~~ 246 (264)
.|++|-+... + ..--+||+..|..|...-... ...||.||++...
T Consensus 251 s~p~~~~~~~~~d~~~lP~~~~~~~~l~~~~t~~~~-~~~~~~~rk~~~~ 299 (327)
T KOG2068|consen 251 SCPICYEDLDLTDSNFLPCPCGFRLCLFCHKTISDG-DGRCPGCRKPYER 299 (327)
T ss_pred CCCCCCCcccccccccccccccccchhhhhhccccc-CCCCCccCCcccc
Confidence 5999999552 2 333478999999998776654 4579999976544
No 148
>KOG0269|consensus
Probab=39.44 E-value=25 Score=37.70 Aligned_cols=42 Identities=21% Similarity=0.333 Sum_probs=32.0
Q ss_pred ccccccccccCc--eeeCCCCeecHhhHHHHhccCCCcccc--cccc
Q psy9201 201 LCKICAENDKDI--RIEPCGHLLCTPCLTSWQVSNRSRILF--YLFY 243 (264)
Q Consensus 201 lC~ICle~~kdp--vitpCGH~FC~~CI~~wl~s~~~~CP~--CR~~ 243 (264)
.|.+|....+.. -.--|||..+.+|+++|+... ..||. |...
T Consensus 781 ~CtVC~~vi~G~~~~c~~C~H~gH~sh~~sw~~~~-s~ca~~~C~~~ 826 (839)
T KOG0269|consen 781 KCTVCDLVIRGVDVWCQVCGHGGHDSHLKSWFFKA-SPCAKSICPHL 826 (839)
T ss_pred CceeecceeeeeEeecccccccccHHHHHHHHhcC-CCCccccCCcc
Confidence 599999887754 345699999999999999754 35776 6443
No 149
>smart00647 IBR In Between Ring fingers. the domains occurs between pairs og RING fingers
Probab=38.93 E-value=7.7 Score=27.03 Aligned_cols=14 Identities=36% Similarity=1.182 Sum_probs=12.7
Q ss_pred CCCCeecHhhHHHH
Q psy9201 216 PCGHLLCTPCLTSW 229 (264)
Q Consensus 216 pCGH~FC~~CI~~w 229 (264)
.|||.||..|..+|
T Consensus 45 ~C~~~fC~~C~~~~ 58 (64)
T smart00647 45 KCGFSFCFRCKVPW 58 (64)
T ss_pred CCCCeECCCCCCcC
Confidence 68999999998887
No 150
>TIGR01245 trpD anthranilate phosphoribosyltransferase. In many widely different species, including E. coli, Thermotoga maritima, and Archaeoglobus fulgidus, this enzymatic domain (anthranilate phosphoribosyltransferase) is found C-terminal to glutamine amidotransferase; the fusion protein is designated anthranilate synthase component II (EC 4.1.3.27)
Probab=38.80 E-value=24 Score=33.60 Aligned_cols=61 Identities=18% Similarity=0.127 Sum_probs=40.6
Q ss_pred ehheeccchHHHHHHHhccccccC-CCCCcc--ccCCCCCCCCCcccccceeEEeeccchhHHHHHHHHHHH
Q psy9201 32 IIFLFSWGLPEFARFQLGLYLPFG-DPPLHI--TLNQPEWGRESEQHAIGKMVTLVTHLDANNFLTSLQAQL 100 (264)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~~l~v~~~~~~a~~tyv~~~l 100 (264)
|.|+|-..|.---+++.++|-..| |+++|+ .|-.| -.....|++|.||.|+.-+..+-..+
T Consensus 143 ~~f~~~~~~~P~~~~l~~lR~~lg~rT~~N~lgpL~NP--------~~~~~~v~Gv~~~~~~~~~a~~~~~l 206 (330)
T TIGR01245 143 IGFLFAPLYHPAMKHVAPVRRELGVRTVFNLLGPLTNP--------ARPKYQVIGVYDPDLVEVMAEALKNL 206 (330)
T ss_pred cEEeechhhCHHHHHHHHHHHHhCCCCHHHHHHHhcCC--------CCCCCEEEcccCHHHHHHHHHHHHHh
Confidence 345665555555566777776666 566666 45544 24578999999999998887744444
No 151
>PF14319 Zn_Tnp_IS91: Transposase zinc-binding domain
Probab=38.79 E-value=31 Score=27.94 Aligned_cols=22 Identities=27% Similarity=0.853 Sum_probs=10.3
Q ss_pred cccccccccCceeeCCCCeecHhh
Q psy9201 202 CKICAENDKDIRIEPCGHLLCTPC 225 (264)
Q Consensus 202 C~ICle~~kdpvitpCGH~FC~~C 225 (264)
|.-|-... .+--.|+|.+|..|
T Consensus 45 C~~Cg~~~--~~~~SCk~R~CP~C 66 (111)
T PF14319_consen 45 CEDCGHEK--IVYNSCKNRHCPSC 66 (111)
T ss_pred cCCCCceE--EecCcccCcCCCCC
Confidence 44444332 23345555555555
No 152
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=38.57 E-value=10 Score=37.66 Aligned_cols=31 Identities=13% Similarity=0.082 Sum_probs=0.0
Q ss_pred eeeCCCCeecHhhHHHHhc-----cCCCccccccccccc
Q psy9201 213 RIEPCGHLLCTPCLTSWQV-----SNRSRILFYLFYFFS 246 (264)
Q Consensus 213 vitpCGH~FC~~CI~~wl~-----s~~~~CP~CR~~i~~ 246 (264)
|-+.|||++=. ..|-. ...+.||+||..-+.
T Consensus 305 VYl~CGHVhG~---h~Wg~~~~~~~~~r~CPlCr~~g~~ 340 (416)
T PF04710_consen 305 VYLNCGHVHGY---HNWGQDSDRDPRSRTCPLCRQVGPY 340 (416)
T ss_dssp ---------------------------------------
T ss_pred eeccccceeee---cccccccccccccccCCCccccCCc
Confidence 45789997533 23432 136799999986555
No 153
>KOG3799|consensus
Probab=37.06 E-value=20 Score=31.03 Aligned_cols=22 Identities=36% Similarity=0.988 Sum_probs=13.3
Q ss_pred cccccccccccCceeeCCCCeecHhh
Q psy9201 200 QLCKICAENDKDIRIEPCGHLLCTPC 225 (264)
Q Consensus 200 elC~ICle~~kdpvitpCGH~FC~~C 225 (264)
..|.||...-- ..-|||. |.-|
T Consensus 66 atC~IC~KTKF---ADG~GH~-C~YC 87 (169)
T KOG3799|consen 66 ATCGICHKTKF---ADGCGHN-CSYC 87 (169)
T ss_pred cchhhhhhccc---ccccCcc-cchh
Confidence 36999987432 3457873 4444
No 154
>PF10833 DUF2572: Protein of unknown function (DUF2572); InterPro: IPR022543 This bacterial family of proteins has no known function.
Probab=36.22 E-value=16 Score=33.52 Aligned_cols=34 Identities=35% Similarity=0.372 Sum_probs=28.9
Q ss_pred hhHHHhhhhhhhheehheeccchHHHHHHHhccc
Q psy9201 18 TTFTLLFSLSFMLFIIFLFSWGLPEFARFQLGLY 51 (264)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 51 (264)
+||++|+.||.+|.++|+|.--.-.+-+-+++.|
T Consensus 4 ~tL~~LillS~~L~l~~L~~dd~L~~~~~~~~qR 37 (221)
T PF10833_consen 4 VTLTILILLSGLLTLIMLFKDDLLRLERSILSQR 37 (221)
T ss_pred ehHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHH
Confidence 6899999999999999999987777666666655
No 155
>KOG1609|consensus
Probab=35.49 E-value=21 Score=32.47 Aligned_cols=48 Identities=27% Similarity=0.711 Sum_probs=35.1
Q ss_pred cccccccccccC----ceeeCCCC-----eecHhhHHHHhc-cCCCcccccccccccc
Q psy9201 200 QLCKICAENDKD----IRIEPCGH-----LLCTPCLTSWQV-SNRSRILFYLFYFFSV 247 (264)
Q Consensus 200 elC~ICle~~kd----pvitpCGH-----~FC~~CI~~wl~-s~~~~CP~CR~~i~~~ 247 (264)
..|-||.+.... +...||.. ..+..|++.|.. ++...|..|.......
T Consensus 79 ~~cRIc~~~~~~~~~~~l~~pC~C~g~l~~vH~~cl~~W~~~~~~~~CeiC~~~~~~~ 136 (323)
T KOG1609|consen 79 PICRICHEEDEESNGLLLISPCSCKGSLAYVHRSCLEKWFSIKGNITCEICKSFFINV 136 (323)
T ss_pred CcEEEEecccccccccccccCccccCcHHHHHHHHHHhhhccccCeeeecccccceec
Confidence 369999995542 56778764 347999999997 3567999998765443
No 156
>KOG1356|consensus
Probab=34.79 E-value=13 Score=40.07 Aligned_cols=47 Identities=19% Similarity=0.463 Sum_probs=33.9
Q ss_pred cccccccccccC--ceeeCCCCeecHhhHHHHhc-----cCCCccccccccccc
Q psy9201 200 QLCKICAENDKD--IRIEPCGHLLCTPCLTSWQV-----SNRSRILFYLFYFFS 246 (264)
Q Consensus 200 elC~ICle~~kd--pvitpCGH~FC~~CI~~wl~-----s~~~~CP~CR~~i~~ 246 (264)
++|-.|.....+ =+...||+.+|.+|+..|.- .....|++|+.....
T Consensus 230 ~mC~~C~~tlfn~hw~C~~C~~~~Cl~C~r~~~p~~~~~e~a~k~~~~~~~C~~ 283 (889)
T KOG1356|consen 230 EMCDRCETTLFNIHWRCPRCGFGVCLDCYRKWYPRLSKEEVAEKCEFSWLKCNK 283 (889)
T ss_pred hhhhhhcccccceeEEccccCCeeeecchhhccccchHhHhhhhhhHHHHhcCC
Confidence 469999887765 46778999999999999941 112367777655443
No 157
>PF04423 Rad50_zn_hook: Rad50 zinc hook motif; InterPro: IPR007517 The Mre11 complex (Mre11 Rad50 Nbs1) is central to chromosomal maintenance and functions in homologous recombination, telomere maintenance and sister chromatid association. The Rad50 coiled-coil region contains a dimer interface at the apex of the coiled coils in which pairs of conserved Cys-X-X-Cys motifs form interlocking hooks that bind one Zn ion. This alignment includes the zinc hook motif and a short stretch of coiled-coil on either side.; GO: 0004518 nuclease activity, 0005524 ATP binding, 0008270 zinc ion binding, 0006281 DNA repair; PDB: 1L8D_B.
Probab=32.72 E-value=11 Score=26.48 Aligned_cols=13 Identities=0% Similarity=-0.468 Sum_probs=6.9
Q ss_pred ccccccccccccc
Q psy9201 236 RILFYLFYFFSVK 248 (264)
Q Consensus 236 ~CP~CR~~i~~~~ 248 (264)
.||+|..++...+
T Consensus 22 ~CPlC~r~l~~e~ 34 (54)
T PF04423_consen 22 CCPLCGRPLDEEH 34 (54)
T ss_dssp E-TTT--EE-HHH
T ss_pred cCCCCCCCCCHHH
Confidence 7999988887654
No 158
>PF10497 zf-4CXXC_R1: Zinc-finger domain of monoamine-oxidase A repressor R1; InterPro: IPR018866 R1 is a transcription factor repressor that inhibits monoamine oxidase A gene expression. This domain is a four-CXXC zinc finger putative DNA-binding domain found at the C-terminal end of R1. The domain carries 12 cysteines of which four pairs are of the CXXC type [].
Probab=32.51 E-value=39 Score=27.29 Aligned_cols=26 Identities=12% Similarity=0.001 Sum_probs=18.4
Q ss_pred CCeecHhhHHHHhc--------cCCCcccccccc
Q psy9201 218 GHLLCTPCLTSWQV--------SNRSRILFYLFY 243 (264)
Q Consensus 218 GH~FC~~CI~~wl~--------s~~~~CP~CR~~ 243 (264)
.=.||..|+..... ...-.||.||.-
T Consensus 37 ~~~fC~~CL~~ryge~~~ev~~~~~W~CP~Crgi 70 (105)
T PF10497_consen 37 RGKFCGGCLRNRYGENVEEVLEDPNWKCPKCRGI 70 (105)
T ss_pred cceehHhHHHHHHhhhHHHHhcCCceECCCCCCe
Confidence 55799999876543 234579999863
No 159
>KOG2807|consensus
Probab=30.54 E-value=26 Score=34.31 Aligned_cols=40 Identities=18% Similarity=0.345 Sum_probs=26.7
Q ss_pred ccccccccccC---ceeeCCCCeecHhhHHHHhccCCCcccccc
Q psy9201 201 LCKICAENDKD---IRIEPCGHLLCTPCLTSWQVSNRSRILFYL 241 (264)
Q Consensus 201 lC~ICle~~kd---pvitpCGH~FC~~CI~~wl~s~~~~CP~CR 241 (264)
.|-.|.+..++ -+...|.|+||.+|=. .+...-+.||-|.
T Consensus 332 ~Cf~C~~~~~~~~~y~C~~Ck~~FCldCDv-~iHesLh~CpgCe 374 (378)
T KOG2807|consen 332 FCFACQGELLSSGRYRCESCKNVFCLDCDV-FIHESLHNCPGCE 374 (378)
T ss_pred ceeeeccccCCCCcEEchhccceeeccchH-HHHhhhhcCCCcC
Confidence 38888665554 3456788999999932 3333345799995
No 160
>PF06906 DUF1272: Protein of unknown function (DUF1272); InterPro: IPR010696 This family consists of several hypothetical bacterial proteins of around 80 residues in length. This family contains a number of conserved cysteine residues and its function is unknown.
Probab=30.19 E-value=56 Score=24.07 Aligned_cols=43 Identities=12% Similarity=0.176 Sum_probs=29.5
Q ss_pred cccccccccC--ceeeCCCC--eecHhhHHHHhccCCCcccccccccccc
Q psy9201 202 CKICAENDKD--IRIEPCGH--LLCTPCLTSWQVSNRSRILFYLFYFFSV 247 (264)
Q Consensus 202 C~ICle~~kd--pvitpCGH--~FC~~CI~~wl~s~~~~CP~CR~~i~~~ 247 (264)
|-.|..++.. +...-|.+ .||.+|.+..+. ..||-|...+...
T Consensus 8 CE~C~~dLp~~s~~A~ICSfECTFC~~C~e~~l~---~~CPNCgGelv~R 54 (57)
T PF06906_consen 8 CECCDKDLPPDSPEAYICSFECTFCADCAETMLN---GVCPNCGGELVRR 54 (57)
T ss_pred ccccCCCCCCCCCcceEEeEeCcccHHHHHHHhc---CcCcCCCCccccC
Confidence 6667665432 23455664 699999998773 4799998876543
No 161
>PF09297 zf-NADH-PPase: NADH pyrophosphatase zinc ribbon domain; InterPro: IPR015376 This domain has a zinc ribbon structure and is often found between two NUDIX domains.; GO: 0016787 hydrolase activity, 0046872 metal ion binding; PDB: 1VK6_A 2GB5_A.
Probab=29.80 E-value=12 Score=23.61 Aligned_cols=26 Identities=15% Similarity=0.098 Sum_probs=13.2
Q ss_pred CCeecHhhHHHHhcc---CCCcccccccc
Q psy9201 218 GHLLCTPCLTSWQVS---NRSRILFYLFY 243 (264)
Q Consensus 218 GH~FC~~CI~~wl~s---~~~~CP~CR~~ 243 (264)
.|.||..|-...... ..+.||.|+..
T Consensus 2 ~~rfC~~CG~~t~~~~~g~~r~C~~Cg~~ 30 (32)
T PF09297_consen 2 NHRFCGRCGAPTKPAPGGWARRCPSCGHE 30 (32)
T ss_dssp TTSB-TTT--BEEE-SSSS-EEESSSS-E
T ss_pred CCcccCcCCccccCCCCcCEeECCCCcCE
Confidence 377888887654331 24578888653
No 162
>PRK00418 DNA gyrase inhibitor; Reviewed
Probab=29.40 E-value=29 Score=25.93 Aligned_cols=11 Identities=0% Similarity=-0.644 Sum_probs=7.1
Q ss_pred Ccccccccccc
Q psy9201 235 SRILFYLFYFF 245 (264)
Q Consensus 235 ~~CP~CR~~i~ 245 (264)
..||.|++++.
T Consensus 7 v~CP~C~k~~~ 17 (62)
T PRK00418 7 VNCPTCGKPVE 17 (62)
T ss_pred ccCCCCCCccc
Confidence 46777777653
No 163
>TIGR00622 ssl1 transcription factor ssl1. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=28.91 E-value=33 Score=28.42 Aligned_cols=40 Identities=13% Similarity=0.228 Sum_probs=27.7
Q ss_pred ccccccccccCc--------------eeeCCCCeecHhhHHHHhccCCCcccccc
Q psy9201 201 LCKICAENDKDI--------------RIEPCGHLLCTPCLTSWQVSNRSRILFYL 241 (264)
Q Consensus 201 lC~ICle~~kdp--------------vitpCGH~FC~~CI~~wl~s~~~~CP~CR 241 (264)
.|--|...+.++ .-..|++.||.+|=. .+...-+.||.|.
T Consensus 57 ~C~~C~~~f~~~~~~~~~~~~~~~~y~C~~C~~~FC~dCD~-fiHe~Lh~CPGC~ 110 (112)
T TIGR00622 57 FCFGCQGPFPKPPVSPFDELKDSHRYVCAVCKNVFCVDCDV-FVHESLHCCPGCI 110 (112)
T ss_pred cccCcCCCCCCcccccccccccccceeCCCCCCccccccch-hhhhhccCCcCCC
Confidence 488888766543 256899999999943 2333446899995
No 164
>KOG3476|consensus
Probab=28.10 E-value=12 Score=30.08 Aligned_cols=42 Identities=17% Similarity=0.403 Sum_probs=31.5
Q ss_pred CCcccccccccccccCceeeCCCCeecHhhHHHHhccCCCcccccccccccc
Q psy9201 196 GSTFQLCKICAENDKDIRIEPCGHLLCTPCLTSWQVSNRSRILFYLFYFFSV 247 (264)
Q Consensus 196 ~st~elC~ICle~~kdpvitpCGH~FC~~CI~~wl~s~~~~CP~CR~~i~~~ 247 (264)
+..+..|.||......| |.++|..|..+ ...|.+|.+.+.+.
T Consensus 51 gt~~~kC~iCk~~vHQ~-----GshYC~tCAY~-----KgiCAMCGKki~nT 92 (100)
T KOG3476|consen 51 GTALAKCRICKQLVHQP-----GSHYCQTCAYK-----KGICAMCGKKILNT 92 (100)
T ss_pred ccccchhHHHHHHhcCC-----cchhHhHhhhh-----hhHHHHhhhHhhcc
Confidence 44445799999987776 77799999753 35799998877554
No 165
>PF06750 DiS_P_DiS: Bacterial Peptidase A24 N-terminal domain; InterPro: IPR010627 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This domain is found at the N terminus of bacterial aspartic peptidases belonging to MEROPS peptidase family A24 (clan AD), subfamily A24A (type IV prepilin peptidase, IPR000045 from INTERPRO). It's function has not been specifically determined; however some of the family have been characterised as bifunctional [], and this domain may contain the N-methylation activity. The domain consists of an intracellular region between a pair of transmembrane domains. This intracellular region contains an invariant proline and four conserved cysteines. These Cys residues are arranged in a two-pair motif, with the Cys residues of a pair separated (usually) by 2 aa and with each pair separated by 21 largely hydrophilic residues (C-X-X-C...X21...C-X-X-C); they have been shown to be essential to the overall function of the enzyme [, ]. The bifunctional enzyme prepilin peptidase (PilD) from Pseudomonas aeruginosa is a key determinant in both type-IV pilus biogenesis and extracellular protein secretion, in its roles as a leader peptidase and methyl transferase (MTase). It is responsible for endopeptidic cleavage of the unique leader peptides that characterise type-IV pilin precursors, as well as proteins with homologous leader sequences that are essential components of the general secretion pathway found in a variety of Gram-negative pathogens. Following removal of the leader peptides, the same enzyme is responsible for the second posttranslational modification that characterises the type-IV pilins and their homologues, namely N-methylation of the newly exposed N-terminal amino acid residue [].
Probab=28.07 E-value=23 Score=27.83 Aligned_cols=21 Identities=19% Similarity=0.036 Sum_probs=15.2
Q ss_pred CCcccccccccccccceeccc
Q psy9201 234 RSRILFYLFYFFSVKEIPLWT 254 (264)
Q Consensus 234 ~~~CP~CR~~i~~~~vipl~~ 254 (264)
...||.|+++++--|.+|+.+
T Consensus 33 rS~C~~C~~~L~~~~lIPi~S 53 (92)
T PF06750_consen 33 RSHCPHCGHPLSWWDLIPILS 53 (92)
T ss_pred CCcCcCCCCcCcccccchHHH
Confidence 346777777777777777765
No 166
>PRK11595 DNA utilization protein GntX; Provisional
Probab=27.49 E-value=48 Score=29.62 Aligned_cols=38 Identities=13% Similarity=0.149 Sum_probs=18.4
Q ss_pred ccccccccccCceeeCCCCeecHhhHHHHhccCCCccccccccc
Q psy9201 201 LCKICAENDKDIRIEPCGHLLCTPCLTSWQVSNRSRILFYLFYF 244 (264)
Q Consensus 201 lC~ICle~~kdpvitpCGH~FC~~CI~~wl~s~~~~CP~CR~~i 244 (264)
.|.+|.+..... .+..|..|...+-.. ...||.|..+.
T Consensus 7 ~C~~C~~~~~~~-----~~~lC~~C~~~l~~~-~~~C~~Cg~~~ 44 (227)
T PRK11595 7 LCWLCRMPLALS-----HWGICSVCSRALRTL-KTCCPQCGLPA 44 (227)
T ss_pred cCccCCCccCCC-----CCcccHHHHhhCCcc-cCcCccCCCcC
Confidence 366776543211 123566666654221 23566665543
No 167
>PF15616 TerY-C: TerY-C metal binding domain
Probab=26.46 E-value=37 Score=28.81 Aligned_cols=39 Identities=15% Similarity=0.129 Sum_probs=28.0
Q ss_pred ccccccccccCceeeCCCCeecHhhHHHHhccCCCccccccccccc
Q psy9201 201 LCKICAENDKDIRIEPCGHLLCTPCLTSWQVSNRSRILFYLFYFFS 246 (264)
Q Consensus 201 lC~ICle~~kdpvitpCGH~FC~~CI~~wl~s~~~~CP~CR~~i~~ 246 (264)
-||=|-....=++. .||+++|.. .....+||-|......
T Consensus 79 gCP~CGn~~~fa~C-~CGkl~Ci~------g~~~~~CPwCg~~g~~ 117 (131)
T PF15616_consen 79 GCPHCGNQYAFAVC-GCGKLFCID------GEGEVTCPWCGNEGSF 117 (131)
T ss_pred CCCCCcChhcEEEe-cCCCEEEeC------CCCCEECCCCCCeeee
Confidence 39988776555555 899999942 2345699999887644
No 168
>PRK04023 DNA polymerase II large subunit; Validated
Probab=26.13 E-value=39 Score=37.48 Aligned_cols=45 Identities=16% Similarity=0.161 Sum_probs=32.3
Q ss_pred ccccccccccCceeeCCCC-----eecHhhHHHHhccCCCccccccccccccc
Q psy9201 201 LCKICAENDKDIRIEPCGH-----LLCTPCLTSWQVSNRSRILFYLFYFFSVK 248 (264)
Q Consensus 201 lC~ICle~~kdpvitpCGH-----~FC~~CI~~wl~s~~~~CP~CR~~i~~~~ 248 (264)
.|+-|-........-.||. .||..|-.+ .....||.|........
T Consensus 628 fCpsCG~~t~~frCP~CG~~Te~i~fCP~CG~~---~~~y~CPKCG~El~~~s 677 (1121)
T PRK04023 628 KCPSCGKETFYRRCPFCGTHTEPVYRCPRCGIE---VEEDECEKCGREPTPYS 677 (1121)
T ss_pred cCCCCCCcCCcccCCCCCCCCCcceeCccccCc---CCCCcCCCCCCCCCccc
Confidence 5999998865566677984 599999433 22357999998876543
No 169
>smart00290 ZnF_UBP Ubiquitin Carboxyl-terminal Hydrolase-like zinc finger.
Probab=25.81 E-value=35 Score=22.95 Aligned_cols=24 Identities=21% Similarity=0.573 Sum_probs=17.2
Q ss_pred cccccccccCceeeCCCCeecHhh
Q psy9201 202 CKICAENDKDIRIEPCGHLLCTPC 225 (264)
Q Consensus 202 C~ICle~~kdpvitpCGH~FC~~C 225 (264)
|..|.....--+.+.|+|++|..-
T Consensus 2 C~~C~~~~~l~~CL~C~~~~c~~~ 25 (50)
T smart00290 2 CSVCGTIENLWLCLTCGQVGCGRY 25 (50)
T ss_pred cccCCCcCCeEEecCCCCcccCCC
Confidence 777776555556778999999543
No 170
>PF01485 IBR: IBR domain; InterPro: IPR002867 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a cysteine-rich (C6HC) zinc finger domain that is present in Triad1, and which is conserved in other proteins encoded by various eukaryotes. The C6HC consensus pattern is: C-x(4)-C-x(14-30)-C-x(1-4)-C-x(4)-C-x(2)-C-x(4)-H-x(4)-C The C6HC zinc finger motif is the fourth family member of the zinc-binding RING, LIM, and LAP/PHD fingers. Strikingly, in most of the proteins the C6HC domain is flanked by two RING finger structures IPR001841 from INTERPRO. The novel C6HC motif has been called DRIL (double RING finger linked). The strong conservation of the larger tripartite TRIAD (twoRING fingers and DRIL) structure indicates that the three subdomains are functionally linked and identifies a novel class of proteins []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2CT7_A 1WD2_A 2JMO_A 1WIM_A.
Probab=25.22 E-value=14 Score=25.56 Aligned_cols=15 Identities=33% Similarity=1.048 Sum_probs=12.7
Q ss_pred eCCCCeecHhhHHHH
Q psy9201 215 EPCGHLLCTPCLTSW 229 (264)
Q Consensus 215 tpCGH~FC~~CI~~w 229 (264)
..||+.||..|-..|
T Consensus 44 ~~C~~~fC~~C~~~~ 58 (64)
T PF01485_consen 44 PSCGTEFCFKCGEPW 58 (64)
T ss_dssp TSCCSEECSSSTSES
T ss_pred CCCCCcCccccCccc
Confidence 349999999998877
No 171
>PF09723 Zn-ribbon_8: Zinc ribbon domain; InterPro: IPR013429 This entry represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB []. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=25.04 E-value=26 Score=23.54 Aligned_cols=27 Identities=19% Similarity=0.004 Sum_probs=16.2
Q ss_pred eeCCCCeecHhhHHHHhccCCCccccccc
Q psy9201 214 IEPCGHLLCTPCLTSWQVSNRSRILFYLF 242 (264)
Q Consensus 214 itpCGH~FC~~CI~~wl~s~~~~CP~CR~ 242 (264)
...|||.|-...-.. ......||.|+.
T Consensus 8 C~~Cg~~fe~~~~~~--~~~~~~CP~Cg~ 34 (42)
T PF09723_consen 8 CEECGHEFEVLQSIS--EDDPVPCPECGS 34 (42)
T ss_pred eCCCCCEEEEEEEcC--CCCCCcCCCCCC
Confidence 357888776432111 123568999987
No 172
>cd06397 PB1_UP1 Uncharacterized protein 1. The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.
Probab=24.75 E-value=81 Score=24.85 Aligned_cols=45 Identities=27% Similarity=0.430 Sum_probs=35.4
Q ss_pred HHHHHHhhhhhhhhhhcccccccccCCcceeeccCCCchHHHHHhcccc
Q psy9201 96 LQAQLYYVFRLSCTRLGQWAIGYVTADGDILQTIPQNKSLCQALLDGYR 144 (264)
Q Consensus 96 v~~~ls~~f~~s~~rlgqw~ig~vs~d~~~~qtIp~nksl~qALLdg~R 144 (264)
++++|--+|++.--.+| +.|+..||..+ ||..|+++..+.-.+.+
T Consensus 25 L~~kl~~Lf~lp~~~~~---vtYiDeD~D~I-Tlssd~eL~d~~~~~~~ 69 (82)
T cd06397 25 LASKLENLYNLPEIKVG---VTYIDNDNDEI-TLSSNKELQDFYRLSHR 69 (82)
T ss_pred HHHHHHHHhCCChhHeE---EEEEcCCCCEE-EecchHHHHHHHHhccc
Confidence 78888888877765555 99999998887 88899988777654444
No 173
>PF12773 DZR: Double zinc ribbon
Probab=24.45 E-value=53 Score=22.15 Aligned_cols=28 Identities=11% Similarity=-0.064 Sum_probs=15.1
Q ss_pred CeecHhhHHHHh--ccCCCccccccccccc
Q psy9201 219 HLLCTPCLTSWQ--VSNRSRILFYLFYFFS 246 (264)
Q Consensus 219 H~FC~~CI~~wl--~s~~~~CP~CR~~i~~ 246 (264)
-.||..|-.... ......||.|...+..
T Consensus 12 ~~fC~~CG~~l~~~~~~~~~C~~Cg~~~~~ 41 (50)
T PF12773_consen 12 AKFCPHCGTPLPPPDQSKKICPNCGAENPP 41 (50)
T ss_pred ccCChhhcCChhhccCCCCCCcCCcCCCcC
Confidence 345555554443 2234567777776543
No 174
>PF02318 FYVE_2: FYVE-type zinc finger; InterPro: IPR003315 This entry represents the zinc-binding domain found in rabphilin Rab3A. The small G protein Rab3A plays an important role in the regulation of neurotransmitter release. The crystal structure of the small G protein Rab3A complexed with the effector domain of rabphilin-3A shows that the effector domain of rabphilin-3A contacts Rab3A in two distinct areas. The first interface involves the Rab3A switch I and switch II regions, which are sensitive to the nucleotide-binding state of Rab3A. The second interface consists of a deep pocket in Rab3A that interacts with a SGAWFF structural element of rabphilin-3A. Sequence and structure analysis, and biochemical data suggest that this pocket, or Rab complementarity-determining region (RabCDR), establishes a specific interaction between each Rab protein and its effectors. It has been suggested that RabCDRs could be major determinants of effector specificity during vesicle trafficking and fusion [].; GO: 0008270 zinc ion binding, 0017137 Rab GTPase binding, 0006886 intracellular protein transport; PDB: 2CSZ_A 2ZET_C 1ZBD_B 3BC1_B 2CJS_C 2A20_A.
Probab=24.38 E-value=11 Score=30.55 Aligned_cols=42 Identities=14% Similarity=0.168 Sum_probs=26.7
Q ss_pred ccccccccc-----cCceeeCCCCeecHhhHHHHhccCCCccccccc
Q psy9201 201 LCKICAEND-----KDIRIEPCGHLLCTPCLTSWQVSNRSRILFYLF 242 (264)
Q Consensus 201 lC~ICle~~-----kdpvitpCGH~FC~~CI~~wl~s~~~~CP~CR~ 242 (264)
.|.+|...+ ...+...|+|.+|..|-..-.....-.|-+|.+
T Consensus 56 ~C~~C~~~fg~l~~~~~~C~~C~~~VC~~C~~~~~~~~~WlC~vC~k 102 (118)
T PF02318_consen 56 HCARCGKPFGFLFNRGRVCVDCKHRVCKKCGVYSKKEPIWLCKVCQK 102 (118)
T ss_dssp B-TTTS-BCSCTSTTCEEETTTTEEEETTSEEETSSSCCEEEHHHHH
T ss_pred chhhhCCcccccCCCCCcCCcCCccccCccCCcCCCCCCEEChhhHH
Confidence 599998854 346678899999999965411112236888865
No 175
>PF15145 DUF4577: Domain of unknown function (DUF4577)
Probab=23.91 E-value=42 Score=28.10 Aligned_cols=47 Identities=26% Similarity=0.454 Sum_probs=31.2
Q ss_pred Cccchhccccccc----------chhhhHHHhhhhhhhheehheeccc---hHHHHHHHh
Q psy9201 2 LLPQEQKLLSIAP----------LAATTFTLLFSLSFMLFIIFLFSWG---LPEFARFQL 48 (264)
Q Consensus 2 ~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~ 48 (264)
++|.|+|+...+. +-+..++|..||...-|.||+..-+ ..+.+||+.
T Consensus 41 lf~leek~~~~~~~sg~g~~~lffvglii~LivSLaLVsFvIFLiiQTgnkMddvSrRL~ 100 (128)
T PF15145_consen 41 LFPLEEKIPGTGTNSGNGSRSLFFVGLIIVLIVSLALVSFVIFLIIQTGNKMDDVSRRLT 100 (128)
T ss_pred CCChHHhccccCCCCCCCceeehHHHHHHHHHHHHHHHHHHHHheeeccchHHHHHHHHH
Confidence 5788888766654 2345667777887777777776433 456666654
No 176
>PF10083 DUF2321: Uncharacterized protein conserved in bacteria (DUF2321); InterPro: IPR016891 This entry is represented by Bacteriophage 'Lactobacillus prophage Lj928', Orf-Ljo1454. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=23.04 E-value=37 Score=29.75 Aligned_cols=26 Identities=8% Similarity=-0.078 Sum_probs=20.5
Q ss_pred CeecHhhHHHHhccCCCccccccccccccc
Q psy9201 219 HLLCTPCLTSWQVSNRSRILFYLFYFFSVK 248 (264)
Q Consensus 219 H~FC~~CI~~wl~s~~~~CP~CR~~i~~~~ 248 (264)
+.||..|-.+.+. .||.|..+|....
T Consensus 28 ~~fC~kCG~~tI~----~Cp~C~~~IrG~y 53 (158)
T PF10083_consen 28 EKFCSKCGAKTIT----SCPNCSTPIRGDY 53 (158)
T ss_pred HHHHHHhhHHHHH----HCcCCCCCCCCce
Confidence 5699999888764 6999999887643
No 177
>PF13240 zinc_ribbon_2: zinc-ribbon domain
Probab=22.17 E-value=21 Score=21.30 Aligned_cols=11 Identities=0% Similarity=-0.547 Sum_probs=6.0
Q ss_pred CCCcccccccc
Q psy9201 233 NRSRILFYLFY 243 (264)
Q Consensus 233 ~~~~CP~CR~~ 243 (264)
+...||.|..+
T Consensus 12 ~~~fC~~CG~~ 22 (23)
T PF13240_consen 12 DAKFCPNCGTP 22 (23)
T ss_pred cCcchhhhCCc
Confidence 34456666554
No 178
>COG4647 AcxC Acetone carboxylase, gamma subunit [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=21.80 E-value=45 Score=28.73 Aligned_cols=21 Identities=29% Similarity=0.520 Sum_probs=17.7
Q ss_pred cccccccCceeeCCCCeecHh
Q psy9201 204 ICAENDKDIRIEPCGHLLCTP 224 (264)
Q Consensus 204 ICle~~kdpvitpCGH~FC~~ 224 (264)
||.+..+.+..-.|||.||..
T Consensus 62 i~qs~~~rv~rcecghsf~d~ 82 (165)
T COG4647 62 ICQSAQKRVIRCECGHSFGDY 82 (165)
T ss_pred EEecccccEEEEeccccccCh
Confidence 788888888788999999963
No 179
>smart00064 FYVE Protein present in Fab1, YOTB, Vac1, and EEA1. The FYVE zinc finger is named after four proteins where it was first found: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two Zn2+ ions. The FYVE finger has eight potential zinc coordinating cysteine positions. The FYVE finger is structurally related to the PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=21.79 E-value=41 Score=20.73 Aligned_cols=11 Identities=0% Similarity=-0.629 Sum_probs=8.1
Q ss_pred ccccccccccc
Q psy9201 236 RILFYLFYFFS 246 (264)
Q Consensus 236 ~CP~CR~~i~~ 246 (264)
+||.|++.++.
T Consensus 2 ~CP~C~~~V~~ 12 (26)
T PF10571_consen 2 TCPECGAEVPE 12 (26)
T ss_pred cCCCCcCCchh
Confidence 68888877754
No 181
>COG3813 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.73 E-value=87 Score=24.42 Aligned_cols=47 Identities=17% Similarity=0.198 Sum_probs=30.2
Q ss_pred ccccccccc----CceeeCCCCeecHhhHHHHhccCCCccccccccccccccee
Q psy9201 202 CKICAENDK----DIRIEPCGHLLCTPCLTSWQVSNRSRILFYLFYFFSVKEIP 251 (264)
Q Consensus 202 C~ICle~~k----dpvitpCGH~FC~~CI~~wl~s~~~~CP~CR~~i~~~~vip 251 (264)
|--|-.+.. +..+-.=-|.||.+|...-+. ..||-|...+....+-|
T Consensus 8 CECCDrDLpp~s~dA~ICtfEcTFCadCae~~l~---g~CPnCGGelv~RP~RP 58 (84)
T COG3813 8 CECCDRDLPPDSTDARICTFECTFCADCAENRLH---GLCPNCGGELVARPIRP 58 (84)
T ss_pred CcccCCCCCCCCCceeEEEEeeehhHhHHHHhhc---CcCCCCCchhhcCcCCh
Confidence 555544332 334434457899999987664 47999988876654443
No 182
>PF02044 Bombesin: Bombesin-like peptide; InterPro: IPR000874 Bombesin-like peptides comprise a large family of peptides which were initially isolated from amphibian skin, where they stimulate smooth muscle contraction. They were later found to be widely distributed in mammalian neural and endocrine cells. The amphibian peptides which belong to this family are currently classified into three subfamilies [, ]; the Bombesin group, which includes bombesin and alytesin; the Ranatensin group, which includes ranatensins, litorin, and Rohdei litorin; and the Phyllolitorin group, which includes Leu(8)- and Phe(8)-phyllolitorins. In mammals and birds two categories of bombesin-like peptides are known [, ], gastrin-releasing peptide (GRP), which stimulates the release of gastrin as well as other gastrointestinal hormones, and neuromedin B (NMB), a neuropeptide whose function is not yet clear. Bombesin-like peptides, like many other active peptides, are synthesized as larger protein precursors that are enzymatically converted to their mature forms. The final peptides are eight to fourteen residues long.; GO: 0007218 neuropeptide signaling pathway; PDB: 1C9A_A 1C98_A.
Probab=21.57 E-value=28 Score=18.78 Aligned_cols=7 Identities=57% Similarity=1.279 Sum_probs=5.5
Q ss_pred ccccccc
Q psy9201 113 QWAIGYV 119 (264)
Q Consensus 113 qw~ig~v 119 (264)
|||+|..
T Consensus 3 ~WAvGh~ 9 (14)
T PF02044_consen 3 QWAVGHF 9 (14)
T ss_dssp TCHHHCT
T ss_pred ccceeee
Confidence 7988864
No 183
>COG1545 Predicted nucleic-acid-binding protein containing a Zn-ribbon [General function prediction only]
Probab=21.30 E-value=55 Score=27.56 Aligned_cols=24 Identities=13% Similarity=0.079 Sum_probs=17.8
Q ss_pred ceeeCCCCeecHhhHHHHhccCCCccccccccc
Q psy9201 212 IRIEPCGHLLCTPCLTSWQVSNRSRILFYLFYF 244 (264)
Q Consensus 212 pvitpCGH~FC~~CI~~wl~s~~~~CP~CR~~i 244 (264)
.+...|||+|. .....||.|++..
T Consensus 30 ~kC~~CG~v~~---------PPr~~Cp~C~~~~ 53 (140)
T COG1545 30 TKCKKCGRVYF---------PPRAYCPKCGSET 53 (140)
T ss_pred EEcCCCCeEEc---------CCcccCCCCCCCC
Confidence 34567899887 4556899998875
No 184
>KOG1553|consensus
Probab=20.73 E-value=34 Score=34.14 Aligned_cols=51 Identities=24% Similarity=0.165 Sum_probs=33.0
Q ss_pred CCCCCCcccccceeEEeeccchhH----------------HHHHHHHHHHHhhhhhhhhhhcccccccc
Q psy9201 67 EWGRESEQHAIGKMVTLVTHLDAN----------------NFLTSLQAQLYYVFRLSCTRLGQWAIGYV 119 (264)
Q Consensus 67 ~~~~~~~~~~~~~~~l~v~~~~~~----------------a~~tyv~~~ls~~f~~s~~rlgqw~ig~v 119 (264)
|-|+-++|...||.|||-+|||.- |+..|...+|. ||..--=|--|-||-.
T Consensus 257 EvG~m~tP~~lgYsvLGwNhPGFagSTG~P~p~n~~nA~DaVvQfAI~~Lg--f~~edIilygWSIGGF 323 (517)
T KOG1553|consen 257 EVGVMNTPAQLGYSVLGWNHPGFAGSTGLPYPVNTLNAADAVVQFAIQVLG--FRQEDIILYGWSIGGF 323 (517)
T ss_pred EeeeecChHHhCceeeccCCCCccccCCCCCcccchHHHHHHHHHHHHHcC--CCccceEEEEeecCCc
Confidence 456678888999999999999963 45555444552 2333333445777643
Done!