RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy9201
(264 letters)
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin
ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB:
2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A
2ldr_A*
Length = 389
Score = 150 bits (379), Expect = 3e-43
Identities = 98/136 (72%), Positives = 109/136 (80%), Gaps = 10/136 (7%)
Query: 101 YYVFRLSCTRLGQWAIGYVTADGDILQTIPQNKSLCQALLDGYREGLSGLIYSILRSYLY 160
Y+FRLSCTRLGQWAIGYVTADG+ILQTIP NK L QAL+DG+REG YL+
Sbjct: 244 SYIFRLSCTRLGQWAIGYVTADGNILQTIPHNKPLFQALIDGFREGF----------YLF 293
Query: 161 PDGRNVNPELSWEFISTPEDHIKVTQEQYELYCEMGSTFQLCKICAENDKDIRIEPCGHL 220
PDGRN NP+L+ TP+DHIKVTQEQYELYCEMGSTFQLCKICAENDKD++IEPCGHL
Sbjct: 294 PDGRNQNPDLTGLCEPTPQDHIKVTQEQYELYCEMGSTFQLCKICAENDKDVKIEPCGHL 353
Query: 221 LCTPCLTSWQVSNRSR 236
+CT CLTSWQ S
Sbjct: 354 MCTSCLTSWQESEGQG 369
>3op0_A Signal transduction protein CBL-C; structural genomics, structural
genomics consortium, SGC, SI transduction protein,
SH3-binding protein; HET: PTR; 2.52A {Homo sapiens}
Length = 323
Score = 94.1 bits (233), Expect = 1e-22
Identities = 43/100 (43%), Positives = 57/100 (57%), Gaps = 11/100 (11%)
Query: 80 MVTLVTHLDANNFLTS-LQAQLYYVFRLSCTRLGQWAIGYVTADGDILQTIPQNKSLCQA 138
+ +T+ + L + Y+FR SCTRLGQWAIGYV++DG ILQTIP NK L Q
Sbjct: 231 YMAFLTYDEVQERLQACRDKPGSYIFRPSCTRLGQWAIGYVSSDGSILQTIPANKPLSQV 290
Query: 139 LLDGYREGLSGLIYSILRSYLYPDGRNVNPELSWEFISTP 178
LL+G ++G YLYPDG+ NP+L+
Sbjct: 291 LLEGQKDGF----------YLYPDGKTHNPDLTELGAENL 320
>3bux_B E3 ubiquitin-protein ligase CBL; TKB, signal transduction,
proto-oncogene, complex, ATP-binding, glycoprotein,
kinase, membrane, nucleotide-binding; HET: PTR; 1.35A
{Homo sapiens} SCOP: a.39.1.7 a.48.1.1 d.93.1.1 PDB:
1yvh_A* 3bun_B* 3buo_B* 3bum_B* 3buw_B* 3ob1_B* 3ob2_B*
3plf_B* 2cbl_A* 1b47_A 3pfv_A*
Length = 329
Score = 89.0 bits (220), Expect = 7e-21
Identities = 54/102 (52%), Positives = 63/102 (61%), Gaps = 20/102 (19%)
Query: 80 MVTLVTHLDANNFLTSLQAQL----------YYVFRLSCTRLGQWAIGYVTADGDILQTI 129
VTH FLT + + Y+FRLSCTRLGQWAIGYVTADG+ILQTI
Sbjct: 237 NSLAVTHPGYMAFLTYDEVKARLQKFIHKPGSYIFRLSCTRLGQWAIGYVTADGNILQTI 296
Query: 130 PQNKSLCQALLDGYREGLSGLIYSILRSYLYPDGRNVNPELS 171
P NK L QAL+DG+REG YL+PDGRN NP+L+
Sbjct: 297 PHNKPLFQALIDGFREG----------FYLFPDGRNQNPDLT 328
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 52.7 bits (126), Expect = 5e-08
Identities = 49/307 (15%), Positives = 84/307 (27%), Gaps = 115/307 (37%)
Query: 3 LPQEQKLLSIAPLAATTFTLLFSLSFMLFIIFLFSWG------------LPEFARFQLGL 50
+ + + A L F+ ++ L L EF
Sbjct: 48 FAADDEPTTPAELVG---------KFLGYVSSLVEPSKVGQFDQVLNLCLTEFEN----C 94
Query: 51 YLPFGDPPLH---ITLNQPEWGRESEQHAIGKMVTLVTHLDANNFL---------TSL-- 96
YL D +H L Q + + + ++ A ++L
Sbjct: 95 YLEGND--IHALAAKLLQENDTTLVKTKEL-----IKNYITARIMAKRPFDKKSNSALFR 147
Query: 97 -----QAQLYYVFRLSCTRLGQWAIGYVTADGDI------LQTIPQN-KSLCQALLDGYR 144
AQL +F GQ G+ L+ + Q L L+
Sbjct: 148 AVGEGNAQLVAIFG------GQ---------GNTDDYFEELRDLYQTYHVLVGDLIKFSA 192
Query: 145 EGLSGLIYSILR-SYLYPDGRNVNPELSWEFISTPEDH---------------IKVTQ-E 187
E LS LI + L ++ G N+ L W + P + I V Q
Sbjct: 193 ETLSELIRTTLDAEKVFTQGLNI---LEW--LENPSNTPDKDYLLSIPISCPLIGVIQLA 247
Query: 188 QYELYCEMGSTFQLCKICAENDKDIRIEPCGHLLCTPCL---------TSWQ--VSNRSR 236
Y + K+ ++R G + L SW+ + +
Sbjct: 248 HYVV---------TAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRK 298
Query: 237 ILFYLFY 243
+ LF+
Sbjct: 299 AITVLFF 305
Score = 41.2 bits (96), Expect = 3e-04
Identities = 41/273 (15%), Positives = 87/273 (31%), Gaps = 86/273 (31%)
Query: 7 QKLLSIAPLA-ATTFTLLFSLSFMLFIIFLFSWGLPEFARFQLGLYLPFGDPPLHITLNQ 65
Q L++ +A ++ F I LF G+ R P +
Sbjct: 275 QGLVTAVAIAETDSWESFFVSV-RKAITVLFFIGV----RCYEAY------PNTSLP--- 320
Query: 66 PEWGRESEQHAIGK---MVTLVTHLDANNFLTSLQAQLYYVFRLSCTRLGQWAIGYVTAD 122
P +S ++ G M++ +++L Q Q+ + + L
Sbjct: 321 PSILEDSLENNEGVPSPMLS-ISNLT--------QEQVQDYVNKTNSHL----------- 360
Query: 123 GDILQTIPQNKSLCQALLDGYR--------EGLSGLIYSILRSYLYPDGRNVN------- 167
P K + +L++G + + L GL LR P G + +
Sbjct: 361 -------PAGKQVEISLVNGAKNLVVSGPPQSLYGLN-LTLRKAKAPSGLDQSRIPFSER 412
Query: 168 -PELSWEF--ISTPEDH----IKVTQEQYELYCEMGSTF---QLCKI---CAENDKDIRI 214
+ S F +++P H + + + + +F + +I + D+R+
Sbjct: 413 KLKFSNRFLPVASPF-HSHLLVPASDLINKDLVKNNVSFNAKDI-QIPVYDTFDGSDLRV 470
Query: 215 --EPCGHLLCTPCLTS----WQVSNR---SRIL 238
+ C+ W+ + + + IL
Sbjct: 471 LSGSISERIV-DCIIRLPVKWETTTQFKATHIL 502
Score = 26.9 bits (59), Expect = 9.6
Identities = 14/72 (19%), Positives = 21/72 (29%), Gaps = 29/72 (40%)
Query: 118 YVTADGDILQTIPQN--KSLCQAL------------------LD---GYREGLSGLIYSI 154
Y T DG L+ + + + + + LD G GL L +
Sbjct: 460 YDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDFGPGGASGLGVLTHRN 519
Query: 155 LRSYLYPDGRNV 166
DG V
Sbjct: 520 K------DGTGV 525
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian,
zinc-binding domain, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 75
Score = 42.8 bits (101), Expect = 4e-06
Identities = 23/76 (30%), Positives = 29/76 (38%), Gaps = 11/76 (14%)
Query: 176 STPEDHIKVTQEQYELYCEMGSTFQLCKICAENDKDIRIEPCGHL-LCTPCLTSWQVSN- 233
S T+EQ E +LCKIC + + I PCGHL C C + V
Sbjct: 6 SGSLQKEISTEEQLRRLQEE----KLCKICMDRNIAIVFVPCGHLVTCKQC--AEAVDKC 59
Query: 234 ---RSRILFYLFYFFS 246
+ I F F S
Sbjct: 60 PMCYTVITFKQKIFMS 75
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase
complex, ring zinc-finger, UBL conjugation pathway;
2.10A {Homo sapiens} PDB: 2yhn_A
Length = 79
Score = 41.3 bits (97), Expect = 2e-05
Identities = 14/45 (31%), Positives = 19/45 (42%), Gaps = 5/45 (11%)
Query: 182 IKVTQEQYELYCEMGSTFQLCKICAENDKDIRIEPCGHL-LCTPC 225
+V QE+ E LC +C E + + PCGH C C
Sbjct: 5 TRVLQEKLRKLKEA----MLCMVCCEEEINSTFCPCGHTVCCESC 45
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1,
ring domain, zinc-binding domain, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 68
Score = 40.5 bits (95), Expect = 2e-05
Identities = 8/27 (29%), Positives = 12/27 (44%), Gaps = 1/27 (3%)
Query: 200 QLCKICAENDKDIRIEPCGHL-LCTPC 225
+ C +C + + PC H LC C
Sbjct: 16 KDCVVCQNGTVNWVLLPCRHTCLCDGC 42
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 70
Score = 37.8 bits (88), Expect = 2e-04
Identities = 11/34 (32%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Query: 202 CKICAENDKDIRIEPCGHLLCTPCLTSWQVSNRS 235
C IC + D+ + PC H C C+ W +R+
Sbjct: 18 CCICMDGRADLIL-PCAHSFCQKCIDKWSDRHRN 50
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2,
protein structure initiative, northeast structural
genomics consortium, NESG; HET: MSE; 2.29A {Homo
sapiens}
Length = 100
Score = 38.3 bits (89), Expect = 3e-04
Identities = 13/35 (37%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 202 CKICAENDKDIRIEP-CGHLLCTPCLTSWQVSNRS 235
C IC E +D R+ P C L C C+ W R+
Sbjct: 25 CFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQRA 59
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative
splicing, HOST-virus interaction, UBL conjugation
pathway, zinc-finger, polymorphism; HET: FLC; 2.20A
{Homo sapiens} PDB: 2vjf_B*
Length = 63
Score = 35.6 bits (82), Expect = 0.001
Identities = 10/39 (25%), Positives = 16/39 (41%), Gaps = 3/39 (7%)
Query: 200 QLCKICAENDKDIRI--EPCGHL-LCTPCLTSWQVSNRS 235
+ C +C + +D I GHL C C + + S
Sbjct: 8 KPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKAGAS 46
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1;
RCHY1, ring domain, zinc-binding domain, structural
genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Length = 55
Score = 35.3 bits (82), Expect = 0.001
Identities = 12/44 (27%), Positives = 14/44 (31%), Gaps = 4/44 (9%)
Query: 196 GSTFQLCKICAEN----DKDIRIEPCGHLLCTPCLTSWQVSNRS 235
S C IC E+ + PCGHLL C
Sbjct: 2 SSGSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYR 45
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring
domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 81
Score = 36.0 bits (83), Expect = 0.001
Identities = 7/28 (25%), Positives = 11/28 (39%)
Query: 202 CKICAENDKDIRIEPCGHLLCTPCLTSW 229
C IC + ++ + C H C C
Sbjct: 18 CFICRQAFQNPVVTKCRHYFCESCALEH 45
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid
herpesvirus 1} SCOP: g.44.1.1
Length = 68
Score = 35.5 bits (82), Expect = 0.001
Identities = 11/29 (37%), Positives = 14/29 (48%), Gaps = 1/29 (3%)
Query: 202 CKICAENDKD-IRIEPCGHLLCTPCLTSW 229
C IC E+ + PC H C C+T W
Sbjct: 8 CPICLEDPSNYSMALPCLHAFCYVCITRW 36
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding
domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 69
Score = 35.3 bits (81), Expect = 0.002
Identities = 11/35 (31%), Positives = 15/35 (42%), Gaps = 7/35 (20%)
Query: 202 CKICAE-------NDKDIRIEPCGHLLCTPCLTSW 229
C IC + N + I CGH+ C+ CL
Sbjct: 18 CPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDS 52
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding;
HET: SUC; 1.50A {Homo sapiens}
Length = 64
Score = 35.1 bits (81), Expect = 0.002
Identities = 12/41 (29%), Positives = 17/41 (41%), Gaps = 8/41 (19%)
Query: 196 GSTFQLCKIC-------AENDKDIRIEPCGHLLCTPCLTSW 229
G+ C IC +N + I CGH+ C+ CL
Sbjct: 1 GAMVS-CPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDS 40
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA,
apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase,
IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB:
1qbh_A 2l9m_A 3eb5_A 3eb6_A
Length = 345
Score = 38.0 bits (86), Expect = 0.002
Identities = 15/75 (20%), Positives = 27/75 (36%), Gaps = 1/75 (1%)
Query: 152 YSILRSYLYPDGRNVNPELSWEFISTPEDHIKVTQEQYELYCEMGSTFQLCKICAENDKD 211
+I ++ L + L + V+ E + CK+C + +
Sbjct: 248 ANIFKNSLKEIDSTLYKNLFVDKNMKYIPTEDVSGLSLEEQLRRLQEERTCKVCMDKEVS 307
Query: 212 IRIEPCGHL-LCTPC 225
+ PCGHL +C C
Sbjct: 308 VVFIPCGHLVVCQEC 322
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 71
Score = 34.8 bits (80), Expect = 0.003
Identities = 8/28 (28%), Positives = 11/28 (39%)
Query: 202 CKICAENDKDIRIEPCGHLLCTPCLTSW 229
C IC + PC H+ C C+
Sbjct: 18 CAICLQTCVHPVSLPCKHVFCYLCVKGA 45
>4epo_C E3 ubiquitin-protein ligase RNF8; coiled-coil, E3 ubiquitin ligase,
protein binding complex; 4.80A {Homo sapiens}
Length = 149
Score = 36.2 bits (83), Expect = 0.003
Identities = 14/57 (24%), Positives = 24/57 (42%), Gaps = 3/57 (5%)
Query: 176 STPEDHIKVTQEQYELYCEMGSTFQ---LCKICAENDKDIRIEPCGHLLCTPCLTSW 229
T E+ K+ ++ E+ M + C IC+E + C H C+ C+ W
Sbjct: 38 QTKEEKEKMQAQKEEVLSHMNDVLENELQCIICSEYFIEAVTLNCAHSFCSYCINEW 94
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT-
interacting protein, ring domain, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 88
Score = 35.1 bits (81), Expect = 0.003
Identities = 11/40 (27%), Positives = 20/40 (50%), Gaps = 4/40 (10%)
Query: 202 CKICAE--NDKDI--RIEPCGHLLCTPCLTSWQVSNRSRI 237
C IC E ++ + ++ CGH +C CL S+ + +
Sbjct: 18 CPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGV 57
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS),
leukemia, transcription regulation; NMR {Homo sapiens}
SCOP: g.44.1.1
Length = 56
Score = 33.5 bits (77), Expect = 0.005
Identities = 11/34 (32%), Positives = 17/34 (50%)
Query: 199 FQLCKICAENDKDIRIEPCGHLLCTPCLTSWQVS 232
F C+ C K ++ PC H LC+ CL + +
Sbjct: 6 FLRCQQCQAEAKCPKLLPCLHTLCSGCLEASGMQ 39
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 66
Score = 33.6 bits (77), Expect = 0.006
Identities = 8/36 (22%), Positives = 14/36 (38%)
Query: 201 LCKICAENDKDIRIEPCGHLLCTPCLTSWQVSNRSR 236
C+ C + CGH C C+ + S+ +
Sbjct: 17 KCEKCHLVLCSPKQTECGHRFCESCMAALLSSSSPK 52
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase,
ubiquitylation, sumoylation, zinc-FI metal binding
protein; 1.80A {Rattus norvegicus}
Length = 71
Score = 33.7 bits (77), Expect = 0.006
Identities = 11/35 (31%), Positives = 15/35 (42%), Gaps = 7/35 (20%)
Query: 202 CKICAE-------NDKDIRIEPCGHLLCTPCLTSW 229
C IC + N + I CGH+ C+ CL
Sbjct: 13 CPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDS 47
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional
control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Length = 78
Score = 33.9 bits (77), Expect = 0.008
Identities = 8/39 (20%), Positives = 14/39 (35%), Gaps = 4/39 (10%)
Query: 202 CKICAE----NDKDIRIEPCGHLLCTPCLTSWQVSNRSR 236
C +C E +D + CG+ +C C +
Sbjct: 14 CPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGL 52
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation,
alternative splicing, HOST-virus interaction, UBL
conjugation pathway, zinc-finger, polymorphism; HET:
FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Length = 64
Score = 33.3 bits (76), Expect = 0.008
Identities = 10/29 (34%), Positives = 12/29 (41%), Gaps = 3/29 (10%)
Query: 200 QLCKICAENDKDIRIEP--CGHL-LCTPC 225
+ C IC K+ I GHL C C
Sbjct: 9 EPCVICQGRPKNGCIVHGKTGHLMACFTC 37
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative
splicing, apoptosis, cytoplasm, metal-binding, UBL
conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Length = 141
Score = 34.3 bits (78), Expect = 0.014
Identities = 11/36 (30%), Positives = 13/36 (36%)
Query: 201 LCKICAENDKDIRIEPCGHLLCTPCLTSWQVSNRSR 236
LC C + CGH C+ CL S S
Sbjct: 33 LCSACRNVLRRPFQAQCGHRYCSFCLASILSSGPQN 68
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha,
coiled coil, cytoplasm, metal- binding, UBL conjugation,
UBL conjugation pathway; 2.20A {Homo sapiens}
Length = 170
Score = 34.7 bits (79), Expect = 0.015
Identities = 9/36 (25%), Positives = 13/36 (36%)
Query: 201 LCKICAENDKDIRIEPCGHLLCTPCLTSWQVSNRSR 236
C IC ++ PCGH C C+ +
Sbjct: 20 ECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHK 55
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA
repair, ring finger domain, metal binding, DNA
replication; 1.75A {Homo sapiens}
Length = 124
Score = 33.8 bits (77), Expect = 0.016
Identities = 8/28 (28%), Positives = 9/28 (32%)
Query: 202 CKICAENDKDIRIEPCGHLLCTPCLTSW 229
C C E C H +C CL
Sbjct: 55 CICCQELVFRPITTVCQHNVCKDCLDRS 82
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 74
Score = 32.2 bits (73), Expect = 0.021
Identities = 10/37 (27%), Positives = 15/37 (40%), Gaps = 2/37 (5%)
Query: 202 CKICAEN-DKDIRIEPCGHLLCTPCLTSW-QVSNRSR 236
C IC + E CG + PC+ + Q + R
Sbjct: 18 CNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPR 54
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4,
UIP4, structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
SCOP: g.44.1.1
Length = 94
Score = 32.9 bits (75), Expect = 0.022
Identities = 9/31 (29%), Positives = 14/31 (45%), Gaps = 3/31 (9%)
Query: 202 CKICAEN---DKDIRIEPCGHLLCTPCLTSW 229
CK+C ++ I C + CT CL +
Sbjct: 8 CKLCLGEYPVEQMTTIAQCQCIFCTLCLKQY 38
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex,
chimera; 2.21A {Rattus norvegicus}
Length = 133
Score = 33.2 bits (75), Expect = 0.026
Identities = 10/41 (24%), Positives = 16/41 (39%), Gaps = 7/41 (17%)
Query: 202 CKICAENDKDIRIE-------PCGHLLCTPCLTSWQVSNRS 235
C IC + +I CGH+ C+ CL + +
Sbjct: 10 CPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANT 50
Score = 30.1 bits (67), Expect = 0.31
Identities = 16/66 (24%), Positives = 24/66 (36%), Gaps = 7/66 (10%)
Query: 171 SWEFISTPEDHIKVTQEQYELYCEMGSTFQLCKICAE-------NDKDIRIEPCGHLLCT 223
S + +T K + +GS C IC + N + I CGH+ C+
Sbjct: 44 SLKNANTCPTCRKKINHKRYHPIYIGSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCS 103
Query: 224 PCLTSW 229
CL
Sbjct: 104 QCLRDS 109
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4),
metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Length = 65
Score = 31.1 bits (70), Expect = 0.043
Identities = 9/35 (25%), Positives = 12/35 (34%), Gaps = 5/35 (14%)
Query: 200 QLCKICAEN-----DKDIRIEPCGHLLCTPCLTSW 229
Q C C + + CGH LC C+
Sbjct: 4 QGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLL 38
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 74
Score = 30.9 bits (70), Expect = 0.062
Identities = 12/45 (26%), Positives = 19/45 (42%), Gaps = 3/45 (6%)
Query: 194 EMGSTFQLCKICAENDKD---IRIEPCGHLLCTPCLTSWQVSNRS 235
+ + +LC +C E+ K + I PC H CL W +
Sbjct: 10 KELNLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKV 54
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding
domain; 1.90A {Mus musculus}
Length = 101
Score = 31.7 bits (71), Expect = 0.068
Identities = 9/30 (30%), Positives = 12/30 (40%), Gaps = 1/30 (3%)
Query: 202 CKICAENDKD-IRIEPCGHLLCTPCLTSWQ 230
C C K R+ PC H+ C C +
Sbjct: 4 CDKCGLPIKVYGRMIPCKHVFCYDCAILHE 33
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha,
coiled coil, cytoplasm, metal- binding, UBL conjugation,
UBL conjugation pathway; 2.10A {Homo sapiens} PDB:
3hcu_A 2eci_A 2jmd_A
Length = 118
Score = 31.7 bits (72), Expect = 0.069
Identities = 9/29 (31%), Positives = 12/29 (41%)
Query: 201 LCKICAENDKDIRIEPCGHLLCTPCLTSW 229
C IC ++ PCGH C C+
Sbjct: 20 ECPICLMALREAVQTPCGHRFCKACIIKS 48
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA
damage, chromatin regulator, chromosomal protein, DNA
repair, metal-binding; 2.12A {Homo sapiens}
Length = 115
Score = 31.8 bits (72), Expect = 0.080
Identities = 12/29 (41%), Positives = 13/29 (44%)
Query: 202 CKICAENDKDIRIEPCGHLLCTPCLTSWQ 230
C IC E + PC H LC PC S
Sbjct: 18 CGICMEILVEPVTLPCNHTLCKPCFQSTV 46
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger,
zinc-binding protein, heterodimer, ubiquitin ligase,
antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Length = 117
Score = 31.4 bits (71), Expect = 0.099
Identities = 6/29 (20%), Positives = 14/29 (48%), Gaps = 1/29 (3%)
Query: 202 CKICAENDKD-IRIEPCGHLLCTPCLTSW 229
C C ++ + + C H+ C+ C++
Sbjct: 25 CSRCTNILREPVCLGGCEHIFCSNCVSDC 53
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 72
Score = 30.5 bits (69), Expect = 0.10
Identities = 9/29 (31%), Positives = 10/29 (34%), Gaps = 1/29 (3%)
Query: 202 CKICAENDKD-IRIEPCGHLLCTPCLTSW 229
C IC D I C H C C+
Sbjct: 18 CSICKGYLIDATTITECLHTFCKSCIVRH 46
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch
signaling, structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Mus musculus}
SCOP: g.44.1.1
Length = 114
Score = 31.0 bits (69), Expect = 0.13
Identities = 12/73 (16%), Positives = 22/73 (30%), Gaps = 6/73 (8%)
Query: 163 GRNVNPELSWEFISTPEDHIKVTQEQY------ELYCEMGSTFQLCKICAENDKDIRIEP 216
G + + + I + +KV E+ +L G + R+
Sbjct: 1 GSSGSSGEPEQVIRKYTEELKVAPEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTK 60
Query: 217 CGHLLCTPCLTSW 229
C H CL +
Sbjct: 61 CSHAFHLLCLLAM 73
>2k4k_A GSP13, general stress protein 13; cytoplasm, stress response, RNA
binding protein; NMR {Bacillus subtilis}
Length = 130
Score = 30.8 bits (70), Expect = 0.17
Identities = 5/19 (26%), Positives = 10/19 (52%)
Query: 169 ELSWEFISTPEDHIKVTQE 187
E++ F+ +H+ V E
Sbjct: 39 EVTHGFVKDINEHLSVGDE 57
>2ecw_A Tripartite motif-containing protein 30; metal binding protein,
structural genomics, NPPSFA; NMR {Mus musculus}
Length = 85
Score = 30.0 bits (68), Expect = 0.18
Identities = 13/35 (37%), Positives = 16/35 (45%)
Query: 202 CKICAENDKDIRIEPCGHLLCTPCLTSWQVSNRSR 236
C IC E K+ C H C C+T SNR+
Sbjct: 22 CPICLELLKEPVSADCNHSFCRACITLNYESNRNT 56
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace
motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Length = 60
Score = 29.3 bits (66), Expect = 0.18
Identities = 13/44 (29%), Positives = 18/44 (40%), Gaps = 11/44 (25%)
Query: 202 CKICAENDKDIRIEPCGHLLCT--------PCLTSWQVSNRSRI 237
C IC E + R CG CT CL++W +R+
Sbjct: 9 CWICNEELGNERFRACG---CTGELENVHRSCLSTWLTISRNTA 49
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc
binuclear cluster, zinc finger, DNA-binding protein;
2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Length = 116
Score = 30.7 bits (69), Expect = 0.19
Identities = 9/28 (32%), Positives = 11/28 (39%)
Query: 202 CKICAENDKDIRIEPCGHLLCTPCLTSW 229
C+IC D C HL C C+
Sbjct: 26 CQICEHILADPVETSCKHLFCRICILRC 53
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain,
zinc-binding domain, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 58
Score = 29.2 bits (66), Expect = 0.19
Identities = 12/28 (42%), Positives = 15/28 (53%)
Query: 202 CKICAENDKDIRIEPCGHLLCTPCLTSW 229
C +C E K+ I CGH C C+T W
Sbjct: 18 CSVCLEYLKEPVIIECGHNFCKACITRW 45
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 31.2 bits (70), Expect = 0.24
Identities = 6/30 (20%), Positives = 9/30 (30%), Gaps = 1/30 (3%)
Query: 197 STFQLCKICAENDKDIRIEP-CGHLLCTPC 225
+ C C I G ++C C
Sbjct: 19 NIVLTCPECKVYPPKIVERFSEGDVVCALC 48
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding,
translesion synthesis, UB conjugation pathway; 1.80A
{Homo sapiens}
Length = 99
Score = 29.7 bits (67), Expect = 0.24
Identities = 9/30 (30%), Positives = 13/30 (43%), Gaps = 1/30 (3%)
Query: 201 LCKICAENDKD-IRIEPCGHLLCTPCLTSW 229
C IC E + I C H C+ C+ +
Sbjct: 24 RCGICFEYFNIAMIIPQCSHNYCSLCIRKF 53
>1z6u_A NP95-like ring finger protein isoform B; structural genomics
consortium, ligase, ubiquitin-protein ligase, cell cycle
regulation, SGC; 2.10A {Homo sapiens}
Length = 150
Score = 30.7 bits (69), Expect = 0.25
Identities = 8/28 (28%), Positives = 9/28 (32%)
Query: 202 CKICAENDKDIRIEPCGHLLCTPCLTSW 229
C C E C H +C CL
Sbjct: 81 CVCCQELVYQPVTTECFHNVCKDCLQRS 108
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb,
E3-ligase, nuclear protein, chromosomal protein,
transcription regulation; 2.0A {Mus musculus} PDB:
3rpg_B 2h0d_A
Length = 108
Score = 29.8 bits (67), Expect = 0.30
Identities = 8/29 (27%), Positives = 11/29 (37%), Gaps = 1/29 (3%)
Query: 202 CKICAENDKD-IRIEPCGHLLCTPCLTSW 229
C +C D I C H C C+ +
Sbjct: 18 CVLCGGYFIDATTIIECLHSFCKTCIVRY 46
>2ect_A Ring finger protein 126; metal binding protein, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Mus musculus}
Length = 78
Score = 28.9 bits (65), Expect = 0.33
Identities = 11/37 (29%), Positives = 17/37 (45%), Gaps = 3/37 (8%)
Query: 202 CKICAEN---DKDIRIEPCGHLLCTPCLTSWQVSNRS 235
C +C E+ + +R PC HL C+ W + S
Sbjct: 18 CPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDS 54
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural
genomics, PSI-2, protein struc initiative; NMR {Homo
sapiens}
Length = 91
Score = 29.2 bits (66), Expect = 0.40
Identities = 21/80 (26%), Positives = 29/80 (36%), Gaps = 11/80 (13%)
Query: 160 YPDGRNVNPELSWEFIST-PEDHIKVTQEQYELYCEMGSTFQLCKICAEN---DKDIRIE 215
+ NP S E I PE I VT++ + EM C IC
Sbjct: 7 HHSHMVANPPASKESIDALPE--ILVTEDHGAVGQEMC-----CPICCSEYVKGDVATEL 59
Query: 216 PCGHLLCTPCLTSWQVSNRS 235
PC H PC++ W + +
Sbjct: 60 PCHHYFHKPCVSIWLQKSGT 79
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein
of testis, proliferation potential-related protein,
protein P2P-R; NMR {Homo sapiens}
Length = 74
Score = 28.6 bits (64), Expect = 0.46
Identities = 10/30 (33%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Query: 201 LCKICAENDKD-IRIEPCGHLLCTPCLTSW 229
LC IC + D + I CG+ C C+ +
Sbjct: 17 LCLICKDIMTDAVVIPCCGNSYCDECIRTA 46
>1hlc_A Human lectin; HET: GAL BGC; 2.90A {Homo sapiens} SCOP: b.29.1.3
Length = 129
Score = 29.1 bits (65), Expect = 0.73
Identities = 18/97 (18%), Positives = 30/97 (30%), Gaps = 19/97 (19%)
Query: 45 RFQLGLYLPFGDPPLHI------------TLNQPEWGRESEQHAI----GKMVTLVTHLD 88
F + L LH +L+ WG+E + + G V +
Sbjct: 27 GFVINLGQGTDKLNLHFNPRFSESTIVCNSLDGSNWGQEQREDHLCFSPGSEVKFTVTFE 86
Query: 89 ANNFLTSLQAQLYYVFRLSCTRLGQWAIGYVTADGDI 125
++ F L F RLG + Y++ G
Sbjct: 87 SDKFKVKLPDGHELTFP---NRLGHSHLSYLSVRGGF 120
>1is3_A Congerin II; complex with lactose and MES, sugar binding protein;
HET: LAT MES; 1.45A {Conger myriaster} SCOP: b.29.1.3
PDB: 1is4_A* 1is5_A 1is6_A* 1wld_A* 1wlw_A* 1wlc_A*
3ak0_A* 3ajz_A*
Length = 135
Score = 28.8 bits (64), Expect = 1.0
Identities = 14/102 (13%), Positives = 23/102 (22%), Gaps = 24/102 (23%)
Query: 45 RFQLGLYLPFGDPPLHI-----------------TLNQPEWGRESEQHAI----GKMVTL 83
RF + + +H+ ++ W +E G
Sbjct: 29 RFSINVGESTDSIAMHMDHRFSYGADQNVLVLNSLVHNVGWQQEERSKKFPFTKGDHFQT 88
Query: 84 VTHLDANNFLTSLQAQLYYVFRLSCTRLGQWAIGYVTADGDI 125
D + F L F R A + GD
Sbjct: 89 TITFDTHTFYIQLSNGETVEFP---NRNKDAAFNLIYLAGDA 127
>1uur_A Stata protein, STAT protein; transcription activator, SH2, signal
transduction, transducer, transcription factor; HET:
PTR; 2.7A {Dictyostelium discoideum} SCOP: a.47.1.1
b.2.5.5 d.93.1.1 PDB: 1uus_A*
Length = 473
Score = 29.6 bits (65), Expect = 1.3
Identities = 6/23 (26%), Positives = 11/23 (47%)
Query: 102 YVFRLSCTRLGQWAIGYVTADGD 124
++ R S GQ+ I Y+ +
Sbjct: 375 FIIRFSERNPGQFGIAYIGVEMP 397
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger
domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 73
Score = 27.3 bits (61), Expect = 1.3
Identities = 9/30 (30%), Positives = 13/30 (43%), Gaps = 1/30 (3%)
Query: 202 CKICAENDKDIRIEPCGHLLCTPCLT-SWQ 230
C IC + + CGH C C+T +
Sbjct: 23 CPICLDILQKPVTIDCGHNFCLKCITQIGE 52
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger
domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 63
Score = 27.0 bits (60), Expect = 1.4
Identities = 9/28 (32%), Positives = 12/28 (42%)
Query: 202 CKICAENDKDIRIEPCGHLLCTPCLTSW 229
C IC + + CGH C C+T
Sbjct: 23 CPICLDILQKPVTIDCGHNFCLKCITQI 50
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring,
ATP-binding, chromosomal protein, coiled coil, DNA
damage; 2.31A {Saccharomyces cerevisiae}
Length = 267
Score = 29.2 bits (64), Expect = 1.4
Identities = 9/59 (15%), Positives = 21/59 (35%), Gaps = 10/59 (16%)
Query: 179 EDHIKVTQEQYELYCEMGSTFQLCKICAENDKD-IRIEPCGHLLCTPCLTSWQVSNRSR 236
ED +++ + EL C I + + + C H+ + ++ +R
Sbjct: 170 EDDLQIEGGKIEL---------TCPITCKPYEAPLISRKCNHVFDRDGIQNYLQGYTTR 219
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn
binding domain, metal zinc, zinc-finger, metal binding
protein; NMR {Homo sapiens}
Length = 69
Score = 26.9 bits (60), Expect = 1.7
Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 3/37 (8%)
Query: 202 CKIC---AENDKDIRIEPCGHLLCTPCLTSWQVSNRS 235
C IC E +D+R PC HL C+ W ++N+
Sbjct: 17 CTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKK 53
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing,
mRNA splicing; NMR {Homo sapiens}
Length = 92
Score = 27.0 bits (60), Expect = 2.1
Identities = 10/30 (33%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Query: 201 LCKICAENDKD-IRIEPCGHLLCTPCLTSW 229
LC IC + D + I CG+ C C+ +
Sbjct: 15 LCLICKDIMTDAVVIPCCGNSYCDECIRTA 44
>3zzo_A CG11501, RH38110P; immune system, immune response; 1.15A
{Drosophila melanogaster} PDB: 3zzr_A
Length = 95
Score = 26.9 bits (59), Expect = 2.4
Identities = 18/86 (20%), Positives = 26/86 (30%), Gaps = 12/86 (13%)
Query: 181 HIKVTQEQYELYCEMGSTFQLCK--ICAENDKDIRIEPCGHLLCTP--------CLTS-W 229
K+ + E + + C+ ICA + CG C CL+ W
Sbjct: 10 EFKMDRGDCEAVRAIENYPNGCEVTICA-DGVAQLGAYCGQGPCNIFGCNCDGGCLSGDW 68
Query: 230 QVSNRSRILFYLFYFFSVKEIPLWTP 255
R Y V +P W P
Sbjct: 69 SQEFVRRNQQYGIQIIKVTRLPFWRP 94
>1d4a_A DT-diaphorase, quinone reductase; flavoprotein, rossman fold,
oxidoreductase; HET: FAD; 1.70A {Homo sapiens} SCOP:
c.23.5.3 PDB: 1dxo_A* 1gg5_A* 1kbo_A* 1kbq_A* 2f1o_A*
3jsx_A* 1h69_A* 1h66_A* 1qbg_A* 1dxq_A* 1qrd_A*
Length = 273
Score = 28.4 bits (63), Expect = 2.5
Identities = 12/61 (19%), Positives = 21/61 (34%), Gaps = 2/61 (3%)
Query: 130 PQNKSLCQALLDGYREGLSGLIYSILRSYLYPDGRNVNPELSWEFISTPEDHIKVTQEQY 189
+ S A+ + L + ++ S LY NP +S + I+ Q
Sbjct: 12 SERTSFNYAMKEAAAAALKKKGWEVVESDLYAMN--FNPIISRKDITGKLKDPANFQYPA 69
Query: 190 E 190
E
Sbjct: 70 E 70
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 27.6 bits (60), Expect = 2.7
Identities = 13/45 (28%), Positives = 16/45 (35%), Gaps = 17/45 (37%)
Query: 144 REGLSGLIYSILRSYLY-PDGRNVNPELSWEFISTPEDHIKVTQE 187
++ L L S L+ LY D S P IK T E
Sbjct: 19 KQALKKLQAS-LK--LYADD-------------SAPALAIKATME 47
Score = 26.8 bits (58), Expect = 5.4
Identities = 7/22 (31%), Positives = 8/22 (36%), Gaps = 2/22 (9%)
Query: 42 EFARFQ--LGLYLPFGDPPLHI 61
+ Q L LY P L I
Sbjct: 21 ALKKLQASLKLYADDSAPALAI 42
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens}
Length = 75
Score = 26.1 bits (58), Expect = 2.9
Identities = 10/38 (26%), Positives = 16/38 (42%), Gaps = 5/38 (13%)
Query: 202 CKIC----AENDKDIRIEPCGHLLCTPCLTSWQVSNRS 235
C +C +R+ PC H C+ W +NR+
Sbjct: 26 CVVCMCDFESRQL-LRVLPCNHEFHAKCVDKWLKANRT 62
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 28.3 bits (62), Expect = 3.1
Identities = 21/106 (19%), Positives = 33/106 (31%), Gaps = 40/106 (37%)
Query: 28 FMLF-IIFL-FSW--------GLPEFARF-------QLGLYLPFGDPPLHITLNQPEWGR 70
LF ++FL F + A QL Y P +I N P++ R
Sbjct: 490 MTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKP------YICDNDPKYER 543
Query: 71 ESEQHAIGKMVTLVTHLDANNFLTSLQAQLYYVFRLSCTRLGQWAI 116
+V +FL ++ L T L + A+
Sbjct: 544 ---------LVN-----AILDFLPKIEENLI---CSKYTDLLRIAL 572
Score = 28.3 bits (62), Expect = 3.7
Identities = 17/94 (18%), Positives = 35/94 (37%), Gaps = 10/94 (10%)
Query: 99 QLYYVFRLSCTRLGQWAIGYVTADGDILQTIPQNKSLCQALLDGYRE-GLSGLIYSILRS 157
+F ++ + +V ++L+ K L + R+ + +Y R
Sbjct: 63 GTLRLFWTLLSKQEEMVQKFV---EEVLR--INYKFLMSPIKTEQRQPSMMTRMYIEQRD 117
Query: 158 YLYPDGRNVNPELSWEFISTPEDHIKVTQEQYEL 191
LY N N + +S + ++K+ Q EL
Sbjct: 118 RLY----NDNQVFAKYNVSRLQPYLKLRQALLEL 147
Score = 26.7 bits (58), Expect = 9.4
Identities = 12/85 (14%), Positives = 25/85 (29%), Gaps = 30/85 (35%)
Query: 124 DILQTIPQNKSLCQALLDGYREGLSGLIYSILRSYLYPDGRNVNPELSWEFISTPED--- 180
++ + +L ++++D Y I +++ S + I D
Sbjct: 434 ELKVKLENEYALHRSIVDHYN---------IPKTF-----------DSDDLIPPYLDQYF 473
Query: 181 ------HIKVTQEQYELYCEMGSTF 199
H+K E E F
Sbjct: 474 YSHIGHHLK-NIEHPERMTLFRMVF 497
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3
ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Length = 238
Score = 27.8 bits (61), Expect = 3.3
Identities = 10/41 (24%), Positives = 16/41 (39%), Gaps = 1/41 (2%)
Query: 197 STFQLCKICAEN-DKDIRIEPCGHLLCTPCLTSWQVSNRSR 236
++C IC + E CG + PC+ + SN
Sbjct: 178 DAVKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEP 218
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase,
nuclear protein, chromosomal protein, transcription
regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Length = 165
Score = 27.2 bits (60), Expect = 3.7
Identities = 9/36 (25%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
Query: 202 CKICAENDKD-IRIEPCGHLLCTPCLT-SWQVSNRS 235
C IC + K+ + + C H C C+ + + N+
Sbjct: 57 CPICLDMLKNTMTTKECLHRFCADCIITALRSGNKE 92
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 81
Score = 26.0 bits (57), Expect = 3.8
Identities = 6/35 (17%), Positives = 13/35 (37%), Gaps = 1/35 (2%)
Query: 202 CKICAENDKDIRIEP-CGHLLCTPCLTSWQVSNRS 235
C+ + + + + C H C++ W N
Sbjct: 32 CQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNR 66
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger,
zinc-binding protein, heterodimer, ubiquitin ligase,
antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Length = 112
Score = 26.6 bits (59), Expect = 4.5
Identities = 9/32 (28%), Positives = 13/32 (40%), Gaps = 8/32 (25%)
Query: 202 CKICAENDKDIRIEP----CGHLLCTPCLTSW 229
C IC ++ EP C H+ C C+
Sbjct: 24 CPIC----LELIKEPVSTKCDHIFCKFCMLKL 51
>2hy5_A Putative sulfurtransferase DSRE; DSRE, DSRF, sulfur, structural
genomics, PSI, protein initiative, berkeley structural
genomics center, BSGC, TRAN; 1.72A {Allochromatium
vinosum} SCOP: c.114.1.1 PDB: 2hyb_A
Length = 130
Score = 26.4 bits (58), Expect = 5.3
Identities = 15/74 (20%), Positives = 24/74 (32%), Gaps = 14/74 (18%)
Query: 135 LCQALLDGYREGLSGLIYSILRSYLYPDG-RNVNPELSWEFISTPEDHIKVTQEQYELYC 193
+A L+ E I R + Y DG N + P+D + EL
Sbjct: 23 FAKAALEKGHE--------IFRVFFYHDGVNNST-----RLTTPPQDDRHIVNRWAELAE 69
Query: 194 EMGSTFQLCKICAE 207
+ +C A+
Sbjct: 70 QYELDMVVCVAAAQ 83
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite
motif protein 34, interferon- responsive finger protein
1; NMR {Homo sapiens}
Length = 79
Score = 25.7 bits (57), Expect = 5.4
Identities = 11/28 (39%), Positives = 13/28 (46%)
Query: 202 CKICAENDKDIRIEPCGHLLCTPCLTSW 229
C IC E + CGH LC C+T
Sbjct: 15 CPICLELLTEPLSLDCGHSLCRACITVS 42
>2ecv_A Tripartite motif-containing protein 5; metal binding protein,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 85
Score = 25.7 bits (57), Expect = 5.7
Identities = 11/32 (34%), Positives = 15/32 (46%), Gaps = 8/32 (25%)
Query: 202 CKICAENDKDIRIEP----CGHLLCTPCLTSW 229
C IC ++ +P CGH C CLT+
Sbjct: 22 CPIC----LELLTQPLSLDCGHSFCQACLTAN 49
>2d1p_A TUSD, hypothetical UPF0163 protein YHEN; tRNA modification, sulfur
transfer, structural genomics, translation; 2.15A
{Escherichia coli} SCOP: c.114.1.1
Length = 140
Score = 26.4 bits (58), Expect = 6.8
Identities = 12/73 (16%), Positives = 25/73 (34%), Gaps = 12/73 (16%)
Query: 135 LCQALLDGYREGLSGLIYSILRSYLYPDGRNVNPELSWEFISTPEDHIKVTQEQYELYCE 194
QAL+ +G + + + Y +G +L+ D + + +L +
Sbjct: 35 FAQALIA---DG-----HELSSVFFYREGVYNANQLTS----PASDEFDLVRAWQQLNAQ 82
Query: 195 MGSTFQLCKICAE 207
G +C A
Sbjct: 83 HGVALNICVAAAL 95
>1npb_A Fosfomycin-resistance protein; manganese binding, potassium
binding loop, transferase; 2.50A {Serratia marcescens}
SCOP: d.32.1.2
Length = 141
Score = 26.3 bits (58), Expect = 7.1
Identities = 12/40 (30%), Positives = 16/40 (40%), Gaps = 2/40 (5%)
Query: 39 GLPEFARFQLGLYLPFGDPPLHITLNQPEWGRESEQHAIG 78
GL AR+ G YL GD L + L+ E +
Sbjct: 27 GLTLHARWNTGAYLTCGD--LWVCLSYDEARQYVPPQESD 64
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.326 0.141 0.453
Gapped
Lambda K H
0.267 0.0544 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,017,751
Number of extensions: 229090
Number of successful extensions: 633
Number of sequences better than 10.0: 1
Number of HSP's gapped: 628
Number of HSP's successfully gapped: 87
Length of query: 264
Length of database: 6,701,793
Length adjustment: 92
Effective length of query: 172
Effective length of database: 4,133,061
Effective search space: 710886492
Effective search space used: 710886492
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 56 (25.8 bits)