RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy9201
(264 letters)
>d3buxb3 d.93.1.1 (B:264-351) Cbl {Human (Homo sapiens) [TaxId:
9606]}
Length = 88
Score = 113 bits (285), Expect = 4e-33
Identities = 48/70 (68%), Positives = 55/70 (78%), Gaps = 10/70 (14%)
Query: 102 YVFRLSCTRLGQWAIGYVTADGDILQTIPQNKSLCQALLDGYREGLSGLIYSILRSYLYP 161
Y+FRLSCTRLGQWAIGYVTADG+ILQTIP NK L QAL+DG+REG YL+P
Sbjct: 28 YIFRLSCTRLGQWAIGYVTADGNILQTIPHNKPLFQALIDGFREGF----------YLFP 77
Query: 162 DGRNVNPELS 171
DGRN NP+L+
Sbjct: 78 DGRNQNPDLT 87
>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId:
9606]}
Length = 79
Score = 86.6 bits (214), Expect = 1e-22
Identities = 50/60 (83%), Positives = 54/60 (90%)
Query: 177 TPEDHIKVTQEQYELYCEMGSTFQLCKICAENDKDIRIEPCGHLLCTPCLTSWQVSNRSR 236
TP+DHIKVTQEQYELYCEMGSTFQLCKICAENDKD++IEPCGHL+CT CLTSWQ S
Sbjct: 1 TPQDHIKVTQEQYELYCEMGSTFQLCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQG 60
>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia
proto-oncoprotein PML {Human (Homo sapiens) [TaxId:
9606]}
Length = 56
Score = 40.6 bits (95), Expect = 7e-06
Identities = 11/34 (32%), Positives = 17/34 (50%)
Query: 199 FQLCKICAENDKDIRIEPCGHLLCTPCLTSWQVS 232
F C+ C K ++ PC H LC+ CL + +
Sbjct: 6 FLRCQQCQAEAKCPKLLPCLHTLCSGCLEASGMQ 39
>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine
herpesvirus 1 [TaxId: 10326]}
Length = 68
Score = 38.4 bits (89), Expect = 5e-05
Identities = 13/42 (30%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Query: 195 MGSTFQLCKICAENDKD-IRIEPCGHLLCTPCLTSWQVSNRS 235
M + + C IC E+ + PC H C C+T W N +
Sbjct: 1 MATVAERCPICLEDPSNYSMALPCLHAFCYVCITRWIRQNPT 42
>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens)
[TaxId: 9606]}
Length = 103
Score = 35.8 bits (82), Expect = 7e-04
Identities = 9/34 (26%), Positives = 13/34 (38%)
Query: 202 CKICAENDKDIRIEPCGHLLCTPCLTSWQVSNRS 235
C IC E K+ C H+ C C+ +
Sbjct: 24 CPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKG 57
>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1
(RAG1), dimerization domain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 86
Score = 34.9 bits (80), Expect = 0.001
Identities = 9/28 (32%), Positives = 11/28 (39%)
Query: 202 CKICAENDKDIRIEPCGHLLCTPCLTSW 229
C+IC D C HL C C+
Sbjct: 26 CQICEHILADPVETSCKHLFCRICILRC 53
>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa)
[TaxId: 4530]}
Length = 55
Score = 32.1 bits (73), Expect = 0.006
Identities = 8/38 (21%), Positives = 16/38 (42%), Gaps = 4/38 (10%)
Query: 202 CKIC----AENDKDIRIEPCGHLLCTPCLTSWQVSNRS 235
C +C + ++ + CGH C+ W S+ +
Sbjct: 8 CAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHST 45
>d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 78
Score = 32.7 bits (74), Expect = 0.007
Identities = 9/54 (16%), Positives = 12/54 (22%)
Query: 201 LCKICAENDKDIRIEPCGHLLCTPCLTSWQVSNRSRILFYLFYFFSVKEIPLWT 254
C I E KD I G + W + P +
Sbjct: 10 RCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTPNYV 63
>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 52
Score = 32.0 bits (72), Expect = 0.007
Identities = 8/32 (25%), Positives = 13/32 (40%), Gaps = 4/32 (12%)
Query: 202 CKICAE----NDKDIRIEPCGHLLCTPCLTSW 229
C +C E +D + CG+ +C C
Sbjct: 3 CPLCMEPLEIDDINFFPCTCGYQICRFCWHRI 34
>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens)
[TaxId: 9606]}
Length = 97
Score = 32.8 bits (74), Expect = 0.009
Identities = 6/29 (20%), Positives = 13/29 (44%), Gaps = 1/29 (3%)
Query: 202 CKICAEN-DKDIRIEPCGHLLCTPCLTSW 229
C C + + + C H+ C+ C++
Sbjct: 25 CSRCTNILREPVCLGGCEHIFCSNCVSDC 53
>d2c2la2 g.44.1.2 (A:225-304) STIP1 homology and U box-containing
protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 80
Score = 31.4 bits (70), Expect = 0.019
Identities = 8/54 (14%), Positives = 12/54 (22%)
Query: 201 LCKICAENDKDIRIEPCGHLLCTPCLTSWQVSNRSRILFYLFYFFSVKEIPLWT 254
KI E ++ I P G + + IP
Sbjct: 9 CGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQLIPNLA 62
>d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 114
Score = 32.3 bits (72), Expect = 0.020
Identities = 12/73 (16%), Positives = 21/73 (28%), Gaps = 6/73 (8%)
Query: 163 GRNVNPELSWEFISTPEDHIKVTQEQY-----ELYCEMGSTFQLCKICAENDKD-IRIEP 216
G + + + I + +KV E+ E + A R+
Sbjct: 1 GSSGSSGEPEQVIRKYTEELKVAPEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTK 60
Query: 217 CGHLLCTPCLTSW 229
C H CL +
Sbjct: 61 CSHAFHLLCLLAM 73
>d1wima_ g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA0161) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 94
Score = 30.4 bits (68), Expect = 0.061
Identities = 9/31 (29%), Positives = 14/31 (45%), Gaps = 3/31 (9%)
Query: 202 CKICAEN---DKDIRIEPCGHLLCTPCLTSW 229
CK+C ++ I C + CT CL +
Sbjct: 8 CKLCLGEYPVEQMTTIAQCQCIFCTLCLKQY 38
>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens)
[TaxId: 9606]}
Length = 65
Score = 29.4 bits (65), Expect = 0.088
Identities = 10/42 (23%), Positives = 13/42 (30%), Gaps = 5/42 (11%)
Query: 200 QLCKICAEN-----DKDIRIEPCGHLLCTPCLTSWQVSNRSR 236
Q C C + + CGH LC C+ V
Sbjct: 4 QGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGN 45
>d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain
{Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8
[TaxId: 37296]}
Length = 60
Score = 28.3 bits (62), Expect = 0.18
Identities = 8/33 (24%), Positives = 12/33 (36%), Gaps = 5/33 (15%)
Query: 202 CKICAENDKDIRI-----EPCGHLLCTPCLTSW 229
C IC E + R + CL++W
Sbjct: 9 CWICNEELGNERFRACGCTGELENVHRSCLSTW 41
>d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF
ubiquitin ligase complex {Human (Homo sapiens) [TaxId:
9606]}
Length = 88
Score = 28.6 bits (63), Expect = 0.26
Identities = 5/48 (10%), Positives = 13/48 (27%), Gaps = 4/48 (8%)
Query: 192 YCEMGSTFQLCKICAENDKD----IRIEPCGHLLCTPCLTSWQVSNRS 235
+ C+ + + C H C++ W + +
Sbjct: 28 RNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQV 75
>d1nzia1 b.23.1.1 (A:1-117) Complement C1S component {Human (Homo
sapiens) [TaxId: 9606]}
Length = 117
Score = 27.9 bits (61), Expect = 0.59
Identities = 15/92 (16%), Positives = 35/92 (38%), Gaps = 3/92 (3%)
Query: 152 YSILRSYLYPDGRNVNPELSWEFISTPEDHIKVTQEQYELYCEMGSTFQLCKICAENDKD 211
Y + S YP E SW+ I + ++ + +I + + ++
Sbjct: 5 YGEILSPNYPQAYPSEVEKSWDIEVPEGYGIHLYFTHLDIELSENCAYDSVQIISGDTEE 64
Query: 212 IRIEP--CGHLLCTPCLTSWQV-SNRSRILFY 240
R+ + +P + +QV N+ +++F
Sbjct: 65 GRLCGQRSSNNPHSPIVEEFQVPYNKLQVIFK 96
>d2d1pa1 c.114.1.1 (A:1-128) tRNA 2-thiouridine synthesizing protein
D, TusD {Escherichia coli [TaxId: 562]}
Length = 128
Score = 26.9 bits (59), Expect = 1.3
Identities = 14/74 (18%), Positives = 23/74 (31%), Gaps = 14/74 (18%)
Query: 135 LCQALLDGYREGLSGLIYSILRSYLYPDG-RNVNPELSWEFISTPEDHIKVTQEQYELYC 193
QAL+ E + + Y +G N N S D + + +L
Sbjct: 23 FAQALIADGHE--------LSSVFFYREGVYNANQ-----LTSPASDEFDLVRAWQQLNA 69
Query: 194 EMGSTFQLCKICAE 207
+ G +C A
Sbjct: 70 QHGVALNICVAAAL 83
>d1fjja_ b.17.1.2 (A:) Hypothetical protein YbhB {Escherichia coli
[TaxId: 562]}
Length = 159
Score = 24.9 bits (54), Expect = 8.0
Identities = 6/12 (50%), Positives = 10/12 (83%)
Query: 162 DGRNVNPELSWE 173
DG N++P L+W+
Sbjct: 27 DGDNISPHLAWD 38
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.326 0.141 0.453
Gapped
Lambda K H
0.267 0.0510 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,006,410
Number of extensions: 46976
Number of successful extensions: 149
Number of sequences better than 10.0: 1
Number of HSP's gapped: 146
Number of HSP's successfully gapped: 25
Length of query: 264
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 180
Effective length of database: 1,254,276
Effective search space: 225769680
Effective search space used: 225769680
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 52 (24.3 bits)