Query psy9204
Match_columns 265
No_of_seqs 298 out of 1296
Neff 8.3
Searched_HMMs 46136
Date Fri Aug 16 21:34:20 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9204.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/9204hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1287|consensus 99.9 2E-24 4.4E-29 198.5 17.2 179 86-264 8-186 (479)
2 TIGR00911 2A0308 L-type amino 99.9 1E-22 2.3E-27 193.0 21.7 177 86-262 38-214 (501)
3 PRK11387 S-methylmethionine tr 99.9 6.8E-22 1.5E-26 186.1 19.3 175 79-261 3-177 (471)
4 PRK10249 phenylalanine transpo 99.9 8.2E-22 1.8E-26 184.9 18.8 168 86-262 17-184 (458)
5 PRK15049 L-asparagine permease 99.9 1.2E-21 2.6E-26 185.6 19.6 169 86-262 24-193 (499)
6 PRK10238 aromatic amino acid t 99.9 3.9E-21 8.5E-26 180.3 19.4 167 86-261 8-174 (456)
7 PRK11357 frlA putative fructos 99.9 3.9E-21 8.5E-26 179.6 19.2 172 86-261 4-175 (445)
8 PRK10746 putative transport pr 99.9 7.4E-21 1.6E-25 178.6 18.7 166 86-260 6-171 (461)
9 TIGR01773 GABAperm gamma-amino 99.9 8.7E-21 1.9E-25 177.7 19.0 167 86-261 8-174 (452)
10 PRK10836 lysine transporter; P 99.9 1E-20 2.2E-25 179.0 19.3 168 86-261 11-178 (489)
11 TIGR00906 2A0303 cationic amin 99.9 5.8E-21 1.3E-25 182.9 17.2 174 85-261 23-209 (557)
12 PRK10644 arginine:agmatin anti 99.9 1.3E-20 2.8E-25 176.2 18.4 170 86-261 4-173 (445)
13 PRK10655 potE putrescine trans 99.9 2E-20 4.3E-25 174.5 18.6 168 88-261 4-171 (438)
14 TIGR00905 2A0302 transporter, 99.9 2.3E-20 4.9E-25 175.9 17.9 171 88-261 5-177 (473)
15 PRK10580 proY putative proline 99.9 2.9E-20 6.2E-25 174.4 17.8 166 86-260 5-170 (457)
16 TIGR03428 ureacarb_perm permea 99.8 4.7E-20 1E-24 173.8 17.8 173 85-260 8-191 (475)
17 PRK11049 D-alanine/D-serine/gl 99.8 1.1E-19 2.3E-24 171.1 18.9 168 85-261 15-182 (469)
18 TIGR03810 arg_ornith_anti argi 99.8 8.8E-20 1.9E-24 171.6 18.2 169 90-261 1-171 (468)
19 PRK10435 cadB lysine/cadaverin 99.8 1.4E-19 2.9E-24 168.9 18.0 167 87-260 2-168 (435)
20 COG1113 AnsP Gamma-aminobutyra 99.8 5E-19 1.1E-23 160.9 18.7 171 85-264 8-178 (462)
21 COG0833 LysP Amino acid transp 99.8 2.2E-19 4.8E-24 166.3 16.5 171 87-264 41-211 (541)
22 TIGR00913 2A0310 amino acid pe 99.8 4.6E-19 1E-23 167.1 18.7 166 89-262 1-167 (478)
23 TIGR00908 2A0305 ethanolamine 99.8 1.1E-18 2.3E-23 163.1 18.4 163 85-256 2-164 (442)
24 TIGR00909 2A0306 amino acid tr 99.8 1.4E-18 3.1E-23 161.5 16.6 170 88-261 1-181 (429)
25 PRK11021 putative transporter; 99.8 2.9E-18 6.2E-23 158.8 17.0 151 92-249 1-151 (410)
26 PF13520 AA_permease_2: Amino 99.8 4.9E-18 1.1E-22 157.5 18.2 166 92-262 1-168 (426)
27 PRK10197 gamma-aminobutyrate t 99.8 3E-18 6.5E-23 160.3 16.3 153 100-261 2-154 (446)
28 TIGR00930 2a30 K-Cl cotranspor 99.8 3.4E-18 7.4E-23 171.6 16.6 170 87-258 73-248 (953)
29 TIGR00907 2A0304 amino acid pe 99.8 3.4E-18 7.4E-23 161.4 15.4 173 85-259 7-189 (482)
30 KOG1289|consensus 99.8 2.7E-18 5.9E-23 158.8 12.2 172 85-258 43-222 (550)
31 KOG1286|consensus 99.7 6.7E-18 1.5E-22 160.2 10.6 169 86-261 26-203 (554)
32 COG0531 PotE Amino acid transp 99.7 1.9E-16 4.1E-21 148.1 18.2 173 86-263 8-184 (466)
33 PRK15238 inner membrane transp 99.6 8.7E-15 1.9E-19 138.8 18.8 159 87-251 4-173 (496)
34 TIGR03813 put_Glu_GABA_T putat 99.6 7.8E-15 1.7E-19 138.3 17.7 165 90-261 1-172 (474)
35 TIGR00910 2A0307_GadC glutamat 99.6 5.2E-14 1.1E-18 133.8 17.3 165 88-262 2-173 (507)
36 PF00324 AA_permease: Amino ac 99.5 6.5E-15 1.4E-19 139.0 5.0 156 98-257 3-161 (478)
37 TIGR00837 araaP aromatic amino 99.5 1.6E-13 3.5E-18 125.8 13.0 160 98-261 3-162 (381)
38 TIGR00912 2A0309 spore germina 99.5 8.2E-13 1.8E-17 120.2 15.8 152 90-250 1-152 (359)
39 PHA02764 hypothetical protein; 99.3 2.3E-11 5E-16 105.9 13.2 95 85-180 7-101 (399)
40 KOG1287|consensus 99.2 3.5E-10 7.6E-15 104.8 14.4 54 32-86 183-238 (479)
41 TIGR00796 livcs branched-chain 99.0 2.4E-08 5.1E-13 91.4 16.4 150 102-261 5-159 (378)
42 PF03845 Spore_permease: Spore 98.9 9.4E-08 2E-12 85.8 16.6 157 91-257 1-157 (320)
43 TIGR00814 stp serine transport 98.8 1.3E-07 2.9E-12 87.2 16.0 157 98-261 9-170 (397)
44 PF03222 Trp_Tyr_perm: Tryptop 98.8 1.8E-07 4E-12 86.3 15.6 168 91-262 2-169 (394)
45 PRK10483 tryptophan permease; 98.6 1.8E-06 3.9E-11 79.8 16.1 169 87-261 6-175 (414)
46 PRK09664 tryptophan permease T 98.5 5.1E-06 1.1E-10 76.9 15.4 163 93-261 10-174 (415)
47 COG0814 SdaC Amino acid permea 98.4 1.2E-05 2.6E-10 74.9 16.4 170 88-260 5-175 (415)
48 PRK15132 tyrosine transporter 98.4 8.6E-06 1.9E-10 75.4 15.2 162 93-261 4-168 (403)
49 PRK13629 threonine/serine tran 98.4 1.8E-05 4E-10 73.5 17.1 161 98-261 25-186 (443)
50 KOG2083|consensus 98.0 1.9E-05 4E-10 74.7 8.4 165 89-258 27-193 (643)
51 KOG2082|consensus 97.9 8.8E-05 1.9E-09 71.8 10.5 152 105-258 128-292 (1075)
52 PF01235 Na_Ala_symp: Sodium:a 97.8 0.002 4.3E-08 59.8 17.6 161 88-257 15-183 (416)
53 TIGR00835 agcS amino acid carr 97.8 0.0012 2.5E-08 61.5 15.2 155 90-255 45-208 (425)
54 COG1115 AlsT Na+/alanine sympo 97.6 0.0065 1.4E-07 56.3 17.1 160 87-256 58-226 (452)
55 KOG1288|consensus 97.4 0.00024 5.3E-09 68.3 6.1 162 91-254 66-238 (945)
56 PRK10655 potE putrescine trans 97.4 0.014 3E-07 54.6 17.9 33 50-82 188-220 (438)
57 PRK11021 putative transporter; 97.3 0.062 1.3E-06 49.8 19.8 34 49-82 175-208 (410)
58 PRK10644 arginine:agmatin anti 97.0 0.044 9.5E-07 51.4 16.7 34 49-82 189-222 (445)
59 PRK10435 cadB lysine/cadaverin 97.0 0.055 1.2E-06 50.6 17.1 34 49-82 185-218 (435)
60 PRK11375 allantoin permease; P 96.8 0.16 3.4E-06 48.5 18.1 173 84-259 19-204 (484)
61 TIGR00911 2A0308 L-type amino 96.7 0.14 3.1E-06 48.8 17.7 35 48-82 232-266 (501)
62 PRK10249 phenylalanine transpo 96.7 0.19 4.1E-06 47.4 17.8 34 49-82 207-240 (458)
63 PRK11049 D-alanine/D-serine/gl 96.6 0.11 2.3E-06 49.2 15.8 33 50-82 210-242 (469)
64 TIGR03428 ureacarb_perm permea 96.5 0.37 8.1E-06 45.6 18.7 32 51-82 213-244 (475)
65 TIGR00796 livcs branched-chain 96.5 0.088 1.9E-06 48.5 13.8 163 51-256 174-348 (378)
66 TIGR00905 2A0302 transporter, 96.5 0.36 7.8E-06 45.7 18.4 33 49-82 197-229 (473)
67 PRK10197 gamma-aminobutyrate t 96.4 0.32 7E-06 45.7 17.7 34 49-82 179-212 (446)
68 PRK11357 frlA putative fructos 96.2 0.34 7.4E-06 45.3 16.2 33 50-82 194-226 (445)
69 TIGR00913 2A0310 amino acid pe 96.1 0.47 1E-05 44.8 17.1 33 50-82 196-228 (478)
70 PRK11387 S-methylmethionine tr 96.0 0.44 9.5E-06 45.1 16.4 33 50-82 205-237 (471)
71 TIGR01773 GABAperm gamma-amino 96.0 0.64 1.4E-05 43.6 17.1 34 49-82 199-232 (452)
72 TIGR00909 2A0306 amino acid tr 95.9 0.61 1.3E-05 43.3 16.7 34 49-82 193-226 (429)
73 TIGR00800 ncs1 NCS1 nucleoside 95.9 0.46 1E-05 44.6 15.7 166 85-254 7-181 (442)
74 PRK15049 L-asparagine permease 95.9 0.56 1.2E-05 44.8 16.4 33 50-82 219-251 (499)
75 TIGR00907 2A0304 amino acid pe 95.8 1.1 2.3E-05 42.5 18.1 31 52-82 218-248 (482)
76 PRK10836 lysine transporter; P 95.7 1.5 3.2E-05 41.7 18.7 31 52-82 206-236 (489)
77 PRK10238 aromatic amino acid t 95.6 0.65 1.4E-05 43.7 15.6 33 50-82 199-231 (456)
78 TIGR03810 arg_ornith_anti argi 95.6 2.2 4.7E-05 40.3 19.5 31 50-80 194-224 (468)
79 PRK10580 proY putative proline 95.5 1.3 2.8E-05 41.6 17.2 33 50-82 198-230 (457)
80 TIGR00906 2A0303 cationic amin 95.4 1.3 2.9E-05 42.9 17.3 33 50-82 230-262 (557)
81 PRK10746 putative transport pr 95.3 0.65 1.4E-05 43.9 14.6 34 49-82 198-231 (461)
82 PRK11017 codB cytosine permeas 95.2 1.6 3.4E-05 40.6 16.6 90 158-255 73-162 (404)
83 PRK15433 branched-chain amino 95.1 0.65 1.4E-05 43.6 13.5 149 101-261 17-170 (439)
84 COG1457 CodB Purine-cytosine p 95.1 0.67 1.4E-05 43.5 13.5 116 132-257 59-174 (442)
85 PF05525 Branch_AA_trans: Bran 95.1 0.79 1.7E-05 42.9 13.9 151 102-262 13-167 (427)
86 PF02133 Transp_cyt_pur: Perme 95.0 0.47 1E-05 44.3 12.5 163 86-253 3-177 (440)
87 PTZ00206 amino acid transporte 94.9 0.87 1.9E-05 43.2 14.2 101 96-200 64-164 (467)
88 TIGR00813 sss transporter, SSS 94.8 2.6 5.6E-05 39.0 16.9 160 90-260 3-164 (407)
89 KOG1303|consensus 94.8 0.75 1.6E-05 43.2 13.1 169 88-261 34-211 (437)
90 PRK15238 inner membrane transp 94.4 4.1 8.8E-05 38.8 17.4 31 52-82 212-242 (496)
91 COG1114 BrnQ Branched-chain am 94.3 1.6 3.6E-05 40.4 13.6 154 100-262 13-169 (431)
92 TIGR03813 put_Glu_GABA_T putat 94.2 5.1 0.00011 37.8 17.6 24 59-82 202-225 (474)
93 TIGR00908 2A0305 ethanolamine 94.0 5 0.00011 37.4 17.0 33 50-82 190-222 (442)
94 PF13520 AA_permease_2: Amino 93.9 5 0.00011 37.0 16.7 28 52-79 189-216 (426)
95 KOG1304|consensus 93.9 3.4 7.3E-05 38.9 15.2 159 91-253 46-220 (449)
96 COG1953 FUI1 Cytosine/uracil/t 93.5 7.2 0.00016 37.1 17.4 182 79-263 28-221 (497)
97 KOG1289|consensus 93.4 4.3 9.3E-05 39.0 15.0 88 52-174 253-343 (550)
98 TIGR02119 panF sodium/pantothe 93.1 7.8 0.00017 36.6 16.7 162 88-258 38-203 (471)
99 COG0591 PutP Na+/proline sympo 93.0 8.6 0.00019 36.8 17.4 159 88-256 36-199 (493)
100 PRK09395 actP acetate permease 92.8 9.8 0.00021 36.9 17.3 95 158-259 134-229 (551)
101 COG0531 PotE Amino acid transp 92.7 8.4 0.00018 35.8 18.2 35 48-82 198-232 (466)
102 TIGR03648 Na_symport_lg probab 92.6 9.9 0.00021 36.8 16.9 154 88-252 30-185 (552)
103 COG3949 Uncharacterized membra 92.6 3.5 7.5E-05 37.2 12.4 142 100-252 11-155 (349)
104 PRK12488 acetate permease; Pro 92.5 11 0.00023 36.6 17.0 163 88-261 65-229 (549)
105 TIGR00910 2A0307_GadC glutamat 92.2 11 0.00024 36.0 17.9 29 54-82 197-225 (507)
106 PF00474 SSF: Sodium:solute sy 92.0 4.9 0.00011 37.0 13.6 161 89-261 5-169 (406)
107 PRK09442 panF sodium/panthothe 91.7 12 0.00026 35.5 17.4 106 145-258 98-204 (483)
108 TIGR02358 thia_cytX probable h 91.6 11 0.00024 34.7 16.3 98 158-258 60-157 (386)
109 PRK15419 proline:sodium sympor 90.5 17 0.00036 34.8 16.9 98 155-259 107-207 (502)
110 PRK10484 putative transporter; 89.6 20 0.00043 34.4 17.7 169 88-261 36-210 (523)
111 TIGR02711 symport_actP cation/ 89.4 22 0.00047 34.5 17.2 96 158-260 132-228 (549)
112 PF01566 Nramp: Natural resist 89.2 17 0.00036 33.0 14.3 63 136-199 20-84 (358)
113 KOG1286|consensus 89.1 4.7 0.0001 39.2 10.9 31 52-82 233-263 (554)
114 PLN03074 auxin influx permease 88.7 19 0.00041 34.3 14.5 85 92-178 46-142 (473)
115 PRK00701 manganese transport p 88.5 22 0.00048 33.5 17.1 40 136-175 72-113 (439)
116 PF00324 AA_permease: Amino ac 86.1 0.65 1.4E-05 43.9 3.1 35 48-82 197-231 (478)
117 COG1113 AnsP Gamma-aminobutyra 85.7 4 8.7E-05 38.4 7.9 35 48-82 200-234 (462)
118 TIGR02121 Na_Pro_sym sodium/pr 85.5 34 0.00073 32.5 17.6 97 156-259 104-203 (487)
119 COG1966 CstA Carbon starvation 76.4 78 0.0017 30.7 14.2 99 96-199 56-156 (575)
120 TIGR00930 2a30 K-Cl cotranspor 75.6 1.1E+02 0.0023 32.0 16.2 22 61-82 290-311 (953)
121 COG0833 LysP Amino acid transp 74.4 85 0.0018 30.4 12.7 50 50-100 233-282 (541)
122 PF02028 BCCT: BCCT family tra 73.4 88 0.0019 30.0 16.2 168 88-257 71-264 (485)
123 PF01490 Aa_trans: Transmembra 68.8 0.13 2.7E-06 47.3 -7.3 107 90-199 1-110 (409)
124 TIGR00814 stp serine transport 65.2 1.2E+02 0.0025 28.2 12.1 33 49-81 184-220 (397)
125 PRK09950 putative transporter; 62.9 1.5E+02 0.0032 28.6 12.5 49 209-257 225-274 (506)
126 PRK09928 choline transport pro 61.4 1.3E+02 0.0029 30.0 11.6 22 89-110 90-111 (679)
127 PRK15433 branched-chain amino 59.0 1.6E+02 0.0035 27.8 15.4 93 159-259 268-360 (439)
128 TIGR00842 bcct choline/carniti 56.4 1.8E+02 0.004 27.6 13.0 46 212-257 181-227 (453)
129 COG1914 MntH Mn2+ and Fe2+ tra 54.7 1.9E+02 0.0041 27.2 14.7 40 136-175 55-96 (416)
130 PF05525 Branch_AA_trans: Bran 44.8 2.7E+02 0.0059 26.2 15.8 94 159-259 264-357 (427)
131 PF02554 CstA: Carbon starvati 43.6 2.7E+02 0.0058 25.8 15.2 82 96-180 56-138 (376)
132 KOG2466|consensus 42.7 3.2E+02 0.007 26.4 13.5 174 77-261 41-234 (572)
133 COG1292 BetT Choline-glycine b 38.5 3.8E+02 0.0083 26.1 17.7 51 207-257 226-277 (537)
134 TIGR01197 nramp NRAMP (natural 33.2 4E+02 0.0086 24.7 15.1 34 136-169 42-77 (390)
135 PRK03356 L-carnitine/gamma-but 32.0 4.8E+02 0.01 25.2 13.4 22 89-110 83-104 (504)
136 PRK09928 choline transport pro 25.6 7E+02 0.015 25.1 10.2 72 189-261 429-501 (679)
137 COG4145 PanF Na+/panthothenate 22.3 6.5E+02 0.014 23.6 10.3 72 130-202 73-152 (473)
138 COG4146 Predicted symporter [G 22.3 6.6E+02 0.014 23.6 9.7 107 158-264 105-215 (571)
139 TIGR00912 2A0309 spore germina 21.9 5.7E+02 0.012 22.7 12.8 45 36-82 165-210 (359)
140 KOG3660|consensus 20.8 8.5E+02 0.018 24.3 10.6 46 215-260 217-263 (629)
141 PRK15015 carbon starvation pro 20.2 9E+02 0.019 24.4 12.9 97 98-198 89-186 (701)
142 PF03839 Sec62: Translocation 20.1 3.7E+02 0.0081 22.9 6.2 6 156-161 97-102 (224)
No 1
>KOG1287|consensus
Probab=99.92 E-value=2e-24 Score=198.45 Aligned_cols=179 Identities=60% Similarity=0.977 Sum_probs=169.2
Q ss_pred cccccccchhhhHHhhhccccceeeecchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhccccccCCchHHhHHHH
Q psy9204 86 PVTGQRLVRLEGVSIIVGCIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTIGALCYAELGTCISRSGGDYAYILVA 165 (265)
Q Consensus 86 ~~l~r~l~~~~~~~l~i~~vig~gi~~~~~~~~~~~g~~~~~i~~~~i~~l~~~~~a~~~aEl~s~~P~~GG~y~~~~~~ 165 (265)
.++|||++++..+.+.+++++|+|+|..|..++..+|+.+.++..|++++++++..++||+||++.+|++||+|.|..+.
T Consensus 8 ~~~~kkigll~~v~livg~iIGsGIFvsp~~Vl~~~gsvg~sL~iWv~~gi~s~~galcyaELGT~ipksGgd~ayi~~a 87 (479)
T KOG1287|consen 8 VQLKKKIGLLSGVSLIVGNIIGSGIFVSPKGVLANTGSVGLSLIIWVFCGIISIIGALCYAELGTSIPKSGGDYAYISEA 87 (479)
T ss_pred ccccceeeeecceeEEEEeeEecccccCcHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHHHhccccCCCcchhhHHHH
Confidence 35899999999999999999999999999999999999999988899999999999999999999999999999999999
Q ss_pred hCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Q psy9204 166 FGELPAFLRLWVALLIMRPTTQAIVALTFAQYAIKPFFPDSELPDRAVLLLAAACLCVLTAVNCMSVSWAMQVQTLFTVG 245 (265)
Q Consensus 166 ~g~~~gf~~gw~~~l~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~l~~~~~in~~gvk~~~~i~~v~~~~ 245 (265)
|||.+||+..|.-+++..+...+..+..+++|....++|..+.|.+...+++.+++++++++|+.++|+..|+|.+++..
T Consensus 88 fg~~~aF~~~wvs~l~~~p~~~Ai~altF~~Y~l~p~fp~c~~p~~~~~lla~~~l~~lt~~n~~~V~~a~~vq~~ft~~ 167 (479)
T KOG1287|consen 88 FGPFPAFLFLWVSLLIIVPTSAAIIALTFATYLLKPFFPLCDVPRVASKLLAAALLVLLTLINSFSVKWATRVQIVFTIA 167 (479)
T ss_pred hccchhHHHHHHHHHHHhhhHHHHHHHHHHHHhhcccCCCCCCchHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence 99999999999999977888889999999999666678877788899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhcC
Q psy9204 246 KLVALFGIIAAGIGYLGIG 264 (265)
Q Consensus 246 ~i~~~~~~ii~g~~~~~~g 264 (265)
|++.+.++++.|++....|
T Consensus 168 Kl~al~lIii~G~~~~~~g 186 (479)
T KOG1287|consen 168 KLLALLLIIITGLYLLFWG 186 (479)
T ss_pred HHHHHHHHHHhchheeEec
Confidence 9999999999999977665
No 2
>TIGR00911 2A0308 L-type amino acid transporter.
Probab=99.91 E-value=1e-22 Score=192.98 Aligned_cols=177 Identities=55% Similarity=0.984 Sum_probs=155.6
Q ss_pred cccccccchhhhHHhhhccccceeeecchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhccccccCCchHHhHHHH
Q psy9204 86 PVTGQRLVRLEGVSIIVGCIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTIGALCYAELGTCISRSGGDYAYILVA 165 (265)
Q Consensus 86 ~~l~r~l~~~~~~~l~i~~vig~gi~~~~~~~~~~~g~~~~~i~~~~i~~l~~~~~a~~~aEl~s~~P~~GG~y~~~~~~ 165 (265)
+++||+++.+++++++++.++|+|++..++.++..+|+.+..+++|++++++.++.+++++|+++++|++||.|+|+++.
T Consensus 38 ~~l~r~l~~~~~~~l~vg~iiGsGif~~~~~~~~~~G~~g~~~~~~ii~~i~~~~~al~~aELas~~P~sGG~y~~~~~~ 117 (501)
T TIGR00911 38 VALKKEITLLSGVGIIVGTIIGSGIFVSPKGVLKNAGSVGLALIMWAVCGIFSIVGALVYAELGTTIPKSGGEYNYILEV 117 (501)
T ss_pred cccCccccHhHhhHhheeceEEeeEeecHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchhhhHHhH
Confidence 46999999999999999999999999999998888887666677899999999999999999999999999999999999
Q ss_pred hCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Q psy9204 166 FGELPAFLRLWVALLIMRPTTQAIVALTFAQYAIKPFFPDSELPDRAVLLLAAACLCVLTAVNCMSVSWAMQVQTLFTVG 245 (265)
Q Consensus 166 ~g~~~gf~~gw~~~l~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~l~~~~~in~~gvk~~~~i~~v~~~~ 245 (265)
+||..||+.+|..++...+...+..+..+++|+...+.++...+.+...+++++++++.+++|++|+|..+|+|++.+++
T Consensus 118 ~g~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~~~~~~~~~~~~i~~~~i~~~~~ln~~Gvk~~~~~~~i~~~~ 197 (501)
T TIGR00911 118 FGPLLAFLRLWIELLVIRPGSQAVNALNFAIYILTPVFPDCEVPEWAIRLVAVLCVLLLTLVNCLSVKWATRVQDIFTAC 197 (501)
T ss_pred hCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 99999999999987644456667777778888754455665566677788888899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhh
Q psy9204 246 KLVALFGIIAAGIGYLG 262 (265)
Q Consensus 246 ~i~~~~~~ii~g~~~~~ 262 (265)
|+++++++++.++....
T Consensus 198 ~l~~l~~~ii~~~~~~~ 214 (501)
T TIGR00911 198 KLLALLLIIITGWVQLG 214 (501)
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 99999999888887654
No 3
>PRK11387 S-methylmethionine transporter; Provisional
Probab=99.89 E-value=6.8e-22 Score=186.11 Aligned_cols=175 Identities=16% Similarity=0.282 Sum_probs=143.8
Q ss_pred CCCCCCccccccccchhhhHHhhhccccceeeecchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhccccccCCch
Q psy9204 79 DPYNLVLPVTGQRLVRLEGVSIIVGCIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTIGALCYAELGTCISRSGGD 158 (265)
Q Consensus 79 ~p~~~~~~~l~r~l~~~~~~~l~i~~vig~gi~~~~~~~~~~~g~~~~~i~~~~i~~l~~~~~a~~~aEl~s~~P~~GG~ 158 (265)
+|++...+++||+++.+++.+++++.++|+|+|..++.++..+|+.+ .+++|++++++.++.+++++||++++|++||.
T Consensus 3 ~~~~~~~~~l~r~L~~~~~~~l~ig~~IG~Gif~~~g~~~~~~G~~~-~~l~~~i~~~~~~~~~~~~aELas~~P~aGG~ 81 (471)
T PRK11387 3 EPTSQQAGQFKRTMKVRHLVMLSLGGVIGTGLFFNTGYIISTTGAAG-TLLAYLIGALVVYLVMQCLGELSVAMPETGAF 81 (471)
T ss_pred CCCCCcchhhhhcCcHHHHHHHHHHhhhhhHHHHHHHHHHHHhCcHH-HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCH
Confidence 34442335799999999999999999999999999999988877533 57789999999999999999999999999999
Q ss_pred HHhHHHHhCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHhhhhhHHHHH
Q psy9204 159 YAYILVAFGELPAFLRLWVALLIMRPTTQAIVALTFAQYAIKPFFPDSELPDRAVLLLAAACLCVLTAVNCMSVSWAMQV 238 (265)
Q Consensus 159 y~~~~~~~g~~~gf~~gw~~~l~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~l~~~~~in~~gvk~~~~i 238 (265)
|.|+++.+||..||++||.+|+ .+....+........++. .+.|+ .+. +....+++++++.+|++|+|..+++
T Consensus 82 y~y~~~~~g~~~gf~~gw~~~~-~~~~~~~~~~~~~~~~~~-~~~p~--~~~---~~~~~~~~~~~~~in~~gvk~~~~~ 154 (471)
T PRK11387 82 HVYAARYLGPATGYTVAWLYWL-TWTVALGSSLTAAGFCMQ-YWFPQ--VPV---WPWCLLFCALIFGLNVVSTRFFAEG 154 (471)
T ss_pred HHHHHHhcChHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH-hccCc--CcH---HHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 9999999999999999999998 666666555555555544 34443 232 2344455677889999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q psy9204 239 QTLFTVGKLVALFGIIAAGIGYL 261 (265)
Q Consensus 239 ~~v~~~~~i~~~~~~ii~g~~~~ 261 (265)
|.+.+.+|++.++.+++.++...
T Consensus 155 ~~~~~~~ki~~l~~~ii~g~~~~ 177 (471)
T PRK11387 155 EFWFSLIKVVTILAFIVLGGAAI 177 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999988888887654
No 4
>PRK10249 phenylalanine transporter; Provisional
Probab=99.89 E-value=8.2e-22 Score=184.94 Aligned_cols=168 Identities=22% Similarity=0.296 Sum_probs=145.1
Q ss_pred cccccccchhhhHHhhhccccceeeecchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhccccccCCchHHhHHHH
Q psy9204 86 PVTGQRLVRLEGVSIIVGCIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTIGALCYAELGTCISRSGGDYAYILVA 165 (265)
Q Consensus 86 ~~l~r~l~~~~~~~l~i~~vig~gi~~~~~~~~~~~g~~~~~i~~~~i~~l~~~~~a~~~aEl~s~~P~~GG~y~~~~~~ 165 (265)
+++||+++.+++..++++.++|+|+|..++..+..+|+ ..+++|++++++.++.+++++|+++++|.+||.|.|+++.
T Consensus 17 ~~l~r~l~~~~~~~i~ig~~IGsGif~~~g~~~~~aGp--~~~l~~li~~~~~~~~~~~~aEl~~~~P~~Gg~~~y~~~~ 94 (458)
T PRK10249 17 PTLHRGLHNRHIQLIALGGAIGTGLFLGIGPAIQMAGP--AVLLGYGVAGIIAFLIMRQLGEMVVEEPVSGSFAHFAYKY 94 (458)
T ss_pred hhhhccCcHhHhhhhhhhcccchhHHHHHHHHHHhcCc--HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHH
Confidence 47999999999999999999999999999999988775 3667899999999999999999999999999999999999
Q ss_pred hCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Q psy9204 166 FGELPAFLRLWVALLIMRPTTQAIVALTFAQYAIKPFFPDSELPDRAVLLLAAACLCVLTAVNCMSVSWAMQVQTLFTVG 245 (265)
Q Consensus 166 ~g~~~gf~~gw~~~l~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~l~~~~~in~~gvk~~~~i~~v~~~~ 245 (265)
+||.+||++||.+|+ .+....+......+.++.. +.|+. + .+.+..+++++.+++|++|+|..+|+|.+.+.+
T Consensus 95 ~g~~~gf~~gw~~~~-~~~~~~~~~~~a~~~~~~~-~~~~~--~---~~~~~~~~~~l~~~lN~~gv~~~~~i~~~~~~i 167 (458)
T PRK10249 95 WGPFAGFLSGWNYWV-MFVLVGMAELTAAGIYMQY-WFPDV--P---TWIWAAAFFIIINAVNLVNVRLYGETEFWFALI 167 (458)
T ss_pred hChHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH-cCCcC--c---HHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHH
Confidence 999999999999999 5555556666666677663 44432 2 345567778889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhh
Q psy9204 246 KLVALFGIIAAGIGYLG 262 (265)
Q Consensus 246 ~i~~~~~~ii~g~~~~~ 262 (265)
|++.++++++.++....
T Consensus 168 kv~~i~~~i~~~i~~~~ 184 (458)
T PRK10249 168 KVLAIIGMIGFGLWLLF 184 (458)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99998888888876543
No 5
>PRK15049 L-asparagine permease; Provisional
Probab=99.88 E-value=1.2e-21 Score=185.56 Aligned_cols=169 Identities=21% Similarity=0.345 Sum_probs=141.7
Q ss_pred cccccccchhhhHHhhhccccceeeecchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhccccccCCchHHhHHHH
Q psy9204 86 PVTGQRLVRLEGVSIIVGCIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTIGALCYAELGTCISRSGGDYAYILVA 165 (265)
Q Consensus 86 ~~l~r~l~~~~~~~l~i~~vig~gi~~~~~~~~~~~g~~~~~i~~~~i~~l~~~~~a~~~aEl~s~~P~~GG~y~~~~~~ 165 (265)
+++||+++.+++.++++|.++|+|+|..++.++..+|+ ..+++|++++++.++++.+++||++++|++||.|.|+++.
T Consensus 24 ~~l~r~L~~~~~~~i~~G~~IGsGiF~~~g~~~~~aGp--~~il~~li~~i~~~~v~~slaELas~~P~aGg~y~y~~~~ 101 (499)
T PRK15049 24 EGYHKAMGNRQVQMIAIGGAIGTGLFLGAGARLQMAGP--ALALVYLICGLFSFFILRALGELVLHRPSSGSFVSYAREF 101 (499)
T ss_pred hhhhccCCHhHhHHHhhhccccchHHHhhHHHHHhcCC--HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHH
Confidence 45999999999999999999999999999999988876 3567899999999999999999999999999999999999
Q ss_pred hCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhcCCCCC-CchHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Q psy9204 166 FGELPAFLRLWVALLIMRPTTQAIVALTFAQYAIKPFFPDSE-LPDRAVLLLAAACLCVLTAVNCMSVSWAMQVQTLFTV 244 (265)
Q Consensus 166 ~g~~~gf~~gw~~~l~~~~~~~a~~~~~~~~~l~~~~~~~~~-~~~~~~~~i~~~~l~~~~~in~~gvk~~~~i~~v~~~ 244 (265)
+||..||++||.+|+ .+....+......+.+... .+..+ .+ .++++.+++++++.+|++|+|..+++|+++++
T Consensus 102 ~G~~~gf~~GW~~~l-~~~~~~~~~~~a~~~~~~~--~~~~~~~~---~~~~~~~~~~l~~~iN~~gvk~~~~i~~~~~~ 175 (499)
T PRK15049 102 LGEKAAYVAGWMYFI-NWAMTGIVDITAVALYMHY--WGAFGGVP---QWVFALAALTIVGTMNMIGVKWFAEMEFWFAL 175 (499)
T ss_pred hCcHhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH--hccCCCCc---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999998 5554444444444455432 22221 23 34567778889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhh
Q psy9204 245 GKLVALFGIIAAGIGYLG 262 (265)
Q Consensus 245 ~~i~~~~~~ii~g~~~~~ 262 (265)
+|++.++++++.++....
T Consensus 176 iki~~l~~~ii~~i~~~~ 193 (499)
T PRK15049 176 IKVLAIVTFLVVGTVFLG 193 (499)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 999999998888876543
No 6
>PRK10238 aromatic amino acid transporter; Provisional
Probab=99.87 E-value=3.9e-21 Score=180.27 Aligned_cols=167 Identities=19% Similarity=0.270 Sum_probs=145.7
Q ss_pred cccccccchhhhHHhhhccccceeeecchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhccccccCCchHHhHHHH
Q psy9204 86 PVTGQRLVRLEGVSIIVGCIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTIGALCYAELGTCISRSGGDYAYILVA 165 (265)
Q Consensus 86 ~~l~r~l~~~~~~~l~i~~vig~gi~~~~~~~~~~~g~~~~~i~~~~i~~l~~~~~a~~~aEl~s~~P~~GG~y~~~~~~ 165 (265)
+++||+|+.++...++++.++|+|+|..++.++..+|+ ..+++|++++++.++++++++|+++++|.+||.|+|++|.
T Consensus 8 ~~l~r~L~~~~~~~i~ig~~IGsGif~~~g~~~~~~Gp--~~i~~~~i~gi~~~~v~~s~aEl~s~~P~aGg~y~~~~~~ 85 (456)
T PRK10238 8 EQLKRGLKNRHIQLIALGGAIGTGLFLGSASVIQSAGP--GIILGYAIAGFIAFLIMRQLGEMVVEEPVAGSFSHFAYKY 85 (456)
T ss_pred hhhhccCcHHHHHHHHhhccccchHHHhhHHHHHhcCc--HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Confidence 46999999999999999999999999999999988775 4677899999999999999999999999999999999999
Q ss_pred hCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Q psy9204 166 FGELPAFLRLWVALLIMRPTTQAIVALTFAQYAIKPFFPDSELPDRAVLLLAAACLCVLTAVNCMSVSWAMQVQTLFTVG 245 (265)
Q Consensus 166 ~g~~~gf~~gw~~~l~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~l~~~~~in~~gvk~~~~i~~v~~~~ 245 (265)
+||..||++||.+++ .+....+.....+++++.. +.|+ .+. +....+++++++.+|++|+|..+++|.+.+++
T Consensus 86 ~g~~~gf~~Gw~~~~-~~~~~~~~~~~~~~~~~~~-~~p~--~~~---~~~~~i~~~~~~~lN~~gv~~~~~~~~~~~~i 158 (456)
T PRK10238 86 WGSFAGFASGWNYWV-LYVLVAMAELTAVGKYIQF-WYPE--IPT---WVSAAVFFVVINAINLTNVKVFGEMEFWFAII 158 (456)
T ss_pred cCcHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH-hcCc--CcH---HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 999999999999999 7777777777778888763 4443 232 34566667889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHh
Q psy9204 246 KLVALFGIIAAGIGYL 261 (265)
Q Consensus 246 ~i~~~~~~ii~g~~~~ 261 (265)
|++.++++++.++..+
T Consensus 159 ki~~i~~~ii~~~~~~ 174 (456)
T PRK10238 159 KVIAVVAMIIFGGWLL 174 (456)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999888888776543
No 7
>PRK11357 frlA putative fructoselysine transporter; Provisional
Probab=99.87 E-value=3.9e-21 Score=179.65 Aligned_cols=172 Identities=26% Similarity=0.334 Sum_probs=146.7
Q ss_pred cccccccchhhhHHhhhccccceeeecchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhccccccCCchHHhHHHH
Q psy9204 86 PVTGQRLVRLEGVSIIVGCIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTIGALCYAELGTCISRSGGDYAYILVA 165 (265)
Q Consensus 86 ~~l~r~l~~~~~~~l~i~~vig~gi~~~~~~~~~~~g~~~~~i~~~~i~~l~~~~~a~~~aEl~s~~P~~GG~y~~~~~~ 165 (265)
+++||+++.++.++++++.++|+|++..++.+...+|+++..+++|++++++.++.+++++|+++++|++||.|.|+++.
T Consensus 4 ~~L~r~l~~~~~~~l~vg~~ig~Gif~~~g~~~~~~G~~~~~~l~~li~~v~~l~~al~~aEl~s~~P~~GG~y~y~~~~ 83 (445)
T PRK11357 4 QELQRKLGFWAVLAIAVGTTVGSGIFVSVGEVAKAAGTPWLTVLAFVIGGLIVIPQMCVYAELSTAYPENGADYVYLKNA 83 (445)
T ss_pred ccccccccHHHHHHHHHHhheechhccchHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCceeeHHHh
Confidence 46999999999999999999999999999988877787666788899999999999999999999999999999999999
Q ss_pred hCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Q psy9204 166 FGELPAFLRLWVALLIMRPTTQAIVALTFAQYAIKPFFPDSELPDRAVLLLAAACLCVLTAVNCMSVSWAMQVQTLFTVG 245 (265)
Q Consensus 166 ~g~~~gf~~gw~~~l~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~l~~~~~in~~gvk~~~~i~~v~~~~ 245 (265)
+||..||+.+|..++.......+..+..+.+|+.. ..|. +......++.+++++++.+|++|+|..+|+|++.+++
T Consensus 84 ~g~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~-~~~~---~~~~~~~~~~~~~~~~~~ln~~gv~~~~~v~~~~~~~ 159 (445)
T PRK11357 84 GSRPLAFLSGWASFWANDAPSLSIMALAIVSNLGF-LTPI---DPLLGKFIAAGLIIAFMLLHLRSVEGGAAFQTLITIA 159 (445)
T ss_pred cCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCC---chHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 99999999999855424555666777788888763 3332 2233456677777888999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHh
Q psy9204 246 KLVALFGIIAAGIGYL 261 (265)
Q Consensus 246 ~i~~~~~~ii~g~~~~ 261 (265)
|+++++++++.++...
T Consensus 160 ~~~~l~~~ii~g~~~~ 175 (445)
T PRK11357 160 KIIPFTIVIGLGIFWF 175 (445)
T ss_pred HHHHHHHHHHHHHHHc
Confidence 9999988888887643
No 8
>PRK10746 putative transport protein YifK; Provisional
Probab=99.87 E-value=7.4e-21 Score=178.59 Aligned_cols=166 Identities=17% Similarity=0.239 Sum_probs=144.4
Q ss_pred cccccccchhhhHHhhhccccceeeecchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhccccccCCchHHhHHHH
Q psy9204 86 PVTGQRLVRLEGVSIIVGCIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTIGALCYAELGTCISRSGGDYAYILVA 165 (265)
Q Consensus 86 ~~l~r~l~~~~~~~l~i~~vig~gi~~~~~~~~~~~g~~~~~i~~~~i~~l~~~~~a~~~aEl~s~~P~~GG~y~~~~~~ 165 (265)
+++||+++.+++..+++|.++|+|+|..++..+..+|+ ..+++|++++++.++++++++||++++|++||.|.|++|.
T Consensus 6 ~~l~r~L~~~~~~~i~ig~~IGtGlf~~~g~~l~~aGp--~~~l~~~i~g~~~~~v~~~~aEl~~~~P~sGg~~~y~~~~ 83 (461)
T PRK10746 6 PELQRGLEARHIELIALGGTIGVGLFMGAASTLKWAGP--SVLLAYIIAGLFVFFIMRSMGEMLFLEPVTGSFAVYAHRY 83 (461)
T ss_pred hHHhccCcHHHHHHHHHHhhhhhhHHHHhHHHHHhcCh--HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Confidence 46999999999999999999999999999999988775 3667899999999999999999999999999999999999
Q ss_pred hCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Q psy9204 166 FGELPAFLRLWVALLIMRPTTQAIVALTFAQYAIKPFFPDSELPDRAVLLLAAACLCVLTAVNCMSVSWAMQVQTLFTVG 245 (265)
Q Consensus 166 ~g~~~gf~~gw~~~l~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~l~~~~~in~~gvk~~~~i~~v~~~~ 245 (265)
+||.+||.+||.+|+ .+....+......+.++.. ++|+. + .+....+++++.+.+|++|+|..+++|.+.+.+
T Consensus 84 ~g~~~Gf~~gw~~~~-~~~~~~~~~~~a~~~~l~~-~~p~~--~---~~~~~~~~~~~~~~lN~~gv~~~~~~e~~~~~~ 156 (461)
T PRK10746 84 MSPFFGYLTAWSYWF-MWMAVGISEITAIGVYVQF-WFPEM--A---QWIPALIAVALVALANLAAVRLYGEIEFWFAMI 156 (461)
T ss_pred hCcHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH-ccCCC--c---hHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 999999999999999 6666666666677777763 55542 2 234556667888899999999999999999999
Q ss_pred HHHHHHHHHHHHHHH
Q psy9204 246 KLVALFGIIAAGIGY 260 (265)
Q Consensus 246 ~i~~~~~~ii~g~~~ 260 (265)
|++.++++++.++..
T Consensus 157 ki~~i~~~ii~~~~~ 171 (461)
T PRK10746 157 KVTTIIVMIVIGLGV 171 (461)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999988888754
No 9
>TIGR01773 GABAperm gamma-aminobutyrate permease. GabP is highly homologous to amino acid permeases from B. subtilis, E. coli, as well as to other members of the amino acid permease family (pfam00324). A member of the APC (amine-polyamine-choline) transporter superfamily, GABA permease possesses a "consensus amphiphatic region" (CAR) found to be evolutionarily conserved within this transport family. This amphiphatic region is located between helix 8 and cytoplasmic loop 8-9, forming a potential channel domain and suggested to play a significant role in ligand recognition and translocation. Unique to GABA permeases, a conserved cysteine residue (CYS-300, E.coli) located at the beginning of the amphiphatic domain, has been determined to be critical for catalytic specificity.
Probab=99.87 E-value=8.7e-21 Score=177.65 Aligned_cols=167 Identities=21% Similarity=0.277 Sum_probs=146.9
Q ss_pred cccccccchhhhHHhhhccccceeeecchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhccccccCCchHHhHHHH
Q psy9204 86 PVTGQRLVRLEGVSIIVGCIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTIGALCYAELGTCISRSGGDYAYILVA 165 (265)
Q Consensus 86 ~~l~r~l~~~~~~~l~i~~vig~gi~~~~~~~~~~~g~~~~~i~~~~i~~l~~~~~a~~~aEl~s~~P~~GG~y~~~~~~ 165 (265)
.++||+|+.++..+++++.++|+|+|..++..+..+|+ ..+++|++++++.++.+++++||++++|++||.|.|+++.
T Consensus 8 ~~~~~~L~~~~~~~i~ig~~IGsGif~~~g~~~~~~G~--~~~i~~~i~~v~~~~~a~~~aEl~s~~P~~Gg~~~~~~~~ 85 (452)
T TIGR01773 8 LKLPNGLKTRHVTMLSIAGVIGAGLFVGSGSAIASAGP--AALLAYLLAGLLVVFIMRMLGEMAVANPDTGSFSTYADDA 85 (452)
T ss_pred HhHhCcCcHHHHHHHHHhhhhhchHHHhhHHHHHhcCC--HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Confidence 35899999999999999999999999999999988775 3567899999999999999999999999999999999999
Q ss_pred hCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Q psy9204 166 FGELPAFLRLWVALLIMRPTTQAIVALTFAQYAIKPFFPDSELPDRAVLLLAAACLCVLTAVNCMSVSWAMQVQTLFTVG 245 (265)
Q Consensus 166 ~g~~~gf~~gw~~~l~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~l~~~~~in~~gvk~~~~i~~v~~~~ 245 (265)
+||..||+++|.+|+ .+....+......+.++.. +.|+. + .+.++.+++++++.+|++|+|..+++|++.+++
T Consensus 86 ~g~~~gf~~gw~~~~-~~~~~~~~~~~~~~~~l~~-~~~~~--~---~~~~~~~~~~~~~~~n~~gv~~~~~~~~~~~~~ 158 (452)
T TIGR01773 86 IGRWAGFTIGWLYWW-FWVLVIPLEAIAAAGILQY-WFPDI--P---LWLFSLILTIVLTLTNLYSVKSYGEFEFWFALI 158 (452)
T ss_pred hCcHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH-hcCcC--c---HHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHH
Confidence 999999999999999 7777777777888888774 44542 2 446778888889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHh
Q psy9204 246 KLVALFGIIAAGIGYL 261 (265)
Q Consensus 246 ~i~~~~~~ii~g~~~~ 261 (265)
|++.++.+++.++...
T Consensus 159 ki~~l~~~ii~~~~~~ 174 (452)
T TIGR01773 159 KVIAIIAFIILGAVAI 174 (452)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999988888876543
No 10
>PRK10836 lysine transporter; Provisional
Probab=99.87 E-value=1e-20 Score=178.97 Aligned_cols=168 Identities=22% Similarity=0.284 Sum_probs=139.6
Q ss_pred cccccccchhhhHHhhhccccceeeecchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhccccccCCchHHhHHHH
Q psy9204 86 PVTGQRLVRLEGVSIIVGCIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTIGALCYAELGTCISRSGGDYAYILVA 165 (265)
Q Consensus 86 ~~l~r~l~~~~~~~l~i~~vig~gi~~~~~~~~~~~g~~~~~i~~~~i~~l~~~~~a~~~aEl~s~~P~~GG~y~~~~~~ 165 (265)
+++||+++.+++.++++|.++|+|+|..++.++..+|+ +..+++|+++++++++.++||+||++++|++||.|.|+++.
T Consensus 11 ~~l~r~L~~~~~~~l~vG~~IGsGif~~~g~~~~~aGp-~~~l~a~~i~g~~~~~~al~~aEL~s~~P~sGg~y~y~~~~ 89 (489)
T PRK10836 11 PGLRRELKARHLTMIAIGGSIGTGLFVASGATISQAGP-GGALLSYMLIGLMVYFLMTSLGELAAYMPVSGSFATYGQNY 89 (489)
T ss_pred ccccccCcHHHHHHHHHhhhhhhhhhHhhhHHHHhcCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH
Confidence 56999999999999999999999999999999998775 34678899999999999999999999999999999999999
Q ss_pred hCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Q psy9204 166 FGELPAFLRLWVALLIMRPTTQAIVALTFAQYAIKPFFPDSELPDRAVLLLAAACLCVLTAVNCMSVSWAMQVQTLFTVG 245 (265)
Q Consensus 166 ~g~~~gf~~gw~~~l~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~l~~~~~in~~gvk~~~~i~~v~~~~ 245 (265)
+||..||+.||.+++ .+....+...... .+....+.|+. +. +....+++++++.+|++|+|..+++|.+.+..
T Consensus 90 ~g~~~gf~~Gw~~~~-~~~~~~a~~~~a~-~~~~~~~~~~~--~~---~~~~~~~~~~~~~lN~~gv~~~~~~~~~~~~~ 162 (489)
T PRK10836 90 VEEGFGFALGWNYWY-NWAVTIAVDLVAA-QLVMSWWFPDT--PG---WIWSALFLGVIFLLNYISVRGFGEAEYWFSLI 162 (489)
T ss_pred cChHHHHHHHHHHHH-HHHHHHHHHHHHH-HHHhhhcCCCC--ch---HHHHHHHHHHHHHHHHHcchhhhhhHHHHHHH
Confidence 999999999999998 5555544433333 33333344432 22 23455666778899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHh
Q psy9204 246 KLVALFGIIAAGIGYL 261 (265)
Q Consensus 246 ~i~~~~~~ii~g~~~~ 261 (265)
|++.++.+++.++...
T Consensus 163 ki~~~~~~i~~~~~~~ 178 (489)
T PRK10836 163 KVTTVIVFIIVGVLMI 178 (489)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999998888887664
No 11
>TIGR00906 2A0303 cationic amino acid transport permease.
Probab=99.86 E-value=5.8e-21 Score=182.94 Aligned_cols=174 Identities=23% Similarity=0.369 Sum_probs=145.8
Q ss_pred ccccccccchhhhHHhhhccccceeeecchHHHHHh-cccchHHHHHHHHHHHHHHHHHHHHHHhccccccCCchHHhHH
Q psy9204 85 LPVTGQRLVRLEGVSIIVGCIIGSGIFVSPAGVLAE-TQSVGLSIVIWTVCGLLSTIGALCYAELGTCISRSGGDYAYIL 163 (265)
Q Consensus 85 ~~~l~r~l~~~~~~~l~i~~vig~gi~~~~~~~~~~-~g~~~~~i~~~~i~~l~~~~~a~~~aEl~s~~P~~GG~y~~~~ 163 (265)
+++++|+++.+++++++++.++|+|+|..++.++.. +|+ ..+++|+++++.+++.++||+|+++++|++||.|.|++
T Consensus 23 ~~~L~r~L~~~~l~~l~ig~viGsGIf~l~g~~a~~~aGp--~~~ls~liagv~~l~~al~yaElas~~P~sGg~Y~y~~ 100 (557)
T TIGR00906 23 ESKMKRCLTTWDLMALGIGSTIGAGIYVLTGEVARNDSGP--AIVLSFLISGLAAVLSGFCYAEFGARVPKAGSAYLYSY 100 (557)
T ss_pred ccchhhcCCHHHHHHHHhhhhhcchhhhhhhHHHHhccCc--HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcceeeHH
Confidence 346999999999999999999999999999887654 443 36678999999999999999999999999999999999
Q ss_pred HHhCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhcCC---C-------CCCch--HHHHHHHHHHHHHHHHHHhhh
Q psy9204 164 VAFGELPAFLRLWVALLIMRPTTQAIVALTFAQYAIKPFFP---D-------SELPD--RAVLLLAAACLCVLTAVNCMS 231 (265)
Q Consensus 164 ~~~g~~~gf~~gw~~~l~~~~~~~a~~~~~~~~~l~~~~~~---~-------~~~~~--~~~~~i~~~~l~~~~~in~~g 231 (265)
+.+||.+||+.||.+++ .+....+..+..++.|+...+.. . ...+. ....+++++++++++.+|++|
T Consensus 101 ~~~G~~~gfi~GW~~~l-~~~~~~a~va~~~s~yl~~ll~~~~~~~~~~~~~~~~~~l~~~~~~~a~~ii~l~~~ln~~G 179 (557)
T TIGR00906 101 VTVGELWAFITGWNLIL-EYVIGTAAVARSWSAYFDELLNKQIGQFRRTYFKLNYDGLAEYPDFFAVCLILLLAVLLSFG 179 (557)
T ss_pred HHhCcHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhhccccccccccccCCcccccchHHHHHHHHHHHHHHHhc
Confidence 99999999999999999 77788888888888887643210 0 00010 123456777788889999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy9204 232 VSWAMQVQTLFTVGKLVALFGIIAAGIGYL 261 (265)
Q Consensus 232 vk~~~~i~~v~~~~~i~~~~~~ii~g~~~~ 261 (265)
+|.++|+|++++.+|++.++++++.|+.+.
T Consensus 180 ik~s~~v~~i~~~iki~~l~~~iv~g~~~~ 209 (557)
T TIGR00906 180 VKESAWVNKIFTAINILVLLFVIIAGFTKA 209 (557)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhhhHHHhhC
Confidence 999999999999999999999999988754
No 12
>PRK10644 arginine:agmatin antiporter; Provisional
Probab=99.86 E-value=1.3e-20 Score=176.17 Aligned_cols=170 Identities=21% Similarity=0.314 Sum_probs=139.7
Q ss_pred cccccccchhhhHHhhhccccceeeecchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhccccccCCchHHhHHHH
Q psy9204 86 PVTGQRLVRLEGVSIIVGCIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTIGALCYAELGTCISRSGGDYAYILVA 165 (265)
Q Consensus 86 ~~l~r~l~~~~~~~l~i~~vig~gi~~~~~~~~~~~g~~~~~i~~~~i~~l~~~~~a~~~aEl~s~~P~~GG~y~~~~~~ 165 (265)
.+.+|++++++++++.++.++|+|++..++.+... | +..+++|+++++..++.+++++||++++|++||.|.|+++.
T Consensus 4 ~~~~~~lg~~~~~~l~vg~~iGsGif~~~~~~a~~-g--~~~~~~~~i~~~~~l~~al~~aEL~s~~P~aGG~y~~~~~~ 80 (445)
T PRK10644 4 DADAHKVGLIPVTLMVAGNIMGSGVFLLPANLAST-G--GIAIYGWLVTIIGALGLSMVYAKMSSLDPSPGGSYAYARRC 80 (445)
T ss_pred CccCCCcCHHHHHHHHHhhHhhhHHHhhHHHHHHH-H--HHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCChhHHHHHH
Confidence 35788999999999999999999999999886654 3 34677899999999999999999999999999999999999
Q ss_pred hCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Q psy9204 166 FGELPAFLRLWVALLIMRPTTQAIVALTFAQYAIKPFFPDSELPDRAVLLLAAACLCVLTAVNCMSVSWAMQVQTLFTVG 245 (265)
Q Consensus 166 ~g~~~gf~~gw~~~l~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~l~~~~~in~~gvk~~~~i~~v~~~~ 245 (265)
+||.+||+++|.+|+ .+.............+... ++|.. .+++...++..+++++++.+|++|+|..+|+|++.+.+
T Consensus 81 ~g~~~gf~~gw~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~ln~~gvk~~~~i~~i~~~~ 157 (445)
T PRK10644 81 FGPFLGYQTNVLYWL-ACWIGNIAMVVIGVGYLSY-FFPIL-KDPLVLTITCVVVLWIFVLLNIVGPKMITRVQAVATVL 157 (445)
T ss_pred cCchHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH-Hhccc-CCcHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHH
Confidence 999999999999998 4433444444344455543 44433 23455667778888899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHh
Q psy9204 246 KLVALFGIIAAGIGYL 261 (265)
Q Consensus 246 ~i~~~~~~ii~g~~~~ 261 (265)
|++.++++++.++...
T Consensus 158 ~~i~l~~~~~~~~~~~ 173 (445)
T PRK10644 158 ALIPIVGIAVFGWFWF 173 (445)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9998888888776543
No 13
>PRK10655 potE putrescine transporter; Provisional
Probab=99.86 E-value=2e-20 Score=174.53 Aligned_cols=168 Identities=20% Similarity=0.298 Sum_probs=141.1
Q ss_pred cccccchhhhHHhhhccccceeeecchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhccccccCCchHHhHHHHhC
Q psy9204 88 TGQRLVRLEGVSIIVGCIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTIGALCYAELGTCISRSGGDYAYILVAFG 167 (265)
Q Consensus 88 l~r~l~~~~~~~l~i~~vig~gi~~~~~~~~~~~g~~~~~i~~~~i~~l~~~~~a~~~aEl~s~~P~~GG~y~~~~~~~g 167 (265)
.||++++++++++.++.++|+|++..|..+. ..|+ ..+++|++++++.++.+++++|+++++|++||.|.|+++.+|
T Consensus 4 ~~~~l~~~~~~~l~vg~~iGsGif~~p~~~~-~~G~--~~~~~w~i~~~~~~~~a~~~aeL~~~~P~~GG~y~y~~~~~G 80 (438)
T PRK10655 4 KSNKMGVVQLTILTAVNMMGSGIIMLPTKLA-QVGT--ISILSWLVTAVGSMALAYAFAKCGMFSRKSGGMGGYAEYAFG 80 (438)
T ss_pred ccCcccHHHHHHHHHHhhhhhHHHHhHHHHH-HhhH--HHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCchHHHHHHHcC
Confidence 5789999999999999999999999998755 4454 456789999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Q psy9204 168 ELPAFLRLWVALLIMRPTTQAIVALTFAQYAIKPFFPDSELPDRAVLLLAAACLCVLTAVNCMSVSWAMQVQTLFTVGKL 247 (265)
Q Consensus 168 ~~~gf~~gw~~~l~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~l~~~~~in~~gvk~~~~i~~v~~~~~i 247 (265)
|..||+.+|.+++ .+.......+.....|+.. ++|. ..+++...++.++++++++++|++|+|..+|+|++.+..++
T Consensus 81 ~~~gf~~gw~~~~-~~~~~~~~~a~~~~~y~~~-~~~~-~~~~~~~~~~~~~~l~~~~~ln~~g~~~~~~i~~i~~~~~l 157 (438)
T PRK10655 81 KSGNFMANYTYGV-SLLIANVAIAISAVGYGTE-LFGA-TLSPVQICLATIGVLWLCTVANFGGARITGQISSVTVWGVI 157 (438)
T ss_pred cchHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH-hccc-ccchHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHH
Confidence 9999999999998 5544444555666677764 4442 23445666777888899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHh
Q psy9204 248 VALFGIIAAGIGYL 261 (265)
Q Consensus 248 ~~~~~~ii~g~~~~ 261 (265)
++++++++.++...
T Consensus 158 ~~l~~~~i~~~~~~ 171 (438)
T PRK10655 158 IPVVGLSIIGWFWF 171 (438)
T ss_pred HHHHHHHHHHHHHh
Confidence 98888888776553
No 14
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family. This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions.
Probab=99.85 E-value=2.3e-20 Score=175.86 Aligned_cols=171 Identities=27% Similarity=0.341 Sum_probs=142.3
Q ss_pred cccccchhhhHHhhhccccceeeecchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhcccccc-CCchHHhHHHHh
Q psy9204 88 TGQRLVRLEGVSIIVGCIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTIGALCYAELGTCISR-SGGDYAYILVAF 166 (265)
Q Consensus 88 l~r~l~~~~~~~l~i~~vig~gi~~~~~~~~~~~g~~~~~i~~~~i~~l~~~~~a~~~aEl~s~~P~-~GG~y~~~~~~~ 166 (265)
.+|+++.+++.++.++.++|+|++..|..+...+ +++..+++|++++++.++.+++|+|+++++|+ +||.|.|+++.+
T Consensus 5 ~~~~l~~~~~~~l~ig~vIGsGif~~~~~~~~~~-g~~~~~~~wli~~~~~~~~al~~aEl~s~~P~~sGG~y~y~~~~~ 83 (473)
T TIGR00905 5 KSKKLGLFALTALVIGSMIGSGIFSLPQNLASVA-GPGAVIIGWIITGVGMLALAFVFAILATKKPELDGGIYAYAREGF 83 (473)
T ss_pred cCCCccHHHHHHHHHHHHHhHHHHHhHHHHHHhc-chHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCChhhhHHhHc
Confidence 4789999999999999999999999999877654 34456778999999999999999999999999 999999999999
Q ss_pred CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhcCCCCC-CchHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Q psy9204 167 GELPAFLRLWVALLIMRPTTQAIVALTFAQYAIKPFFPDSE-LPDRAVLLLAAACLCVLTAVNCMSVSWAMQVQTLFTVG 245 (265)
Q Consensus 167 g~~~gf~~gw~~~l~~~~~~~a~~~~~~~~~l~~~~~~~~~-~~~~~~~~i~~~~l~~~~~in~~gvk~~~~i~~v~~~~ 245 (265)
||..||+.||.+|+ .........+....+++.. ++|... .+++...+++++++++.+.+|++|+|..+|+|++.+.+
T Consensus 84 G~~~gf~~gw~~~~-~~~~~~~~~~~~~~~~l~~-~~p~~~~~~~~~~~~~~~~~~~~~~~ln~~Gi~~~~~i~~~~~~~ 161 (473)
T TIGR00905 84 GPYIGFMSGWGYWL-SAWIGNVAYAVLLFSALGY-FFPLFGSGNPVPSILGASVLLWVFTFLVLRGVRQAAFINTITTIA 161 (473)
T ss_pred ccccHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH-HhhhhcCCCcHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence 99999999999988 5444445555555566653 444221 23455667778888889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHh
Q psy9204 246 KLVALFGIIAAGIGYL 261 (265)
Q Consensus 246 ~i~~~~~~ii~g~~~~ 261 (265)
|+++++++++.++...
T Consensus 162 ~l~~l~~~ii~~~~~~ 177 (473)
T TIGR00905 162 KLIPLFLFIIIGWFWF 177 (473)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999888887643
No 15
>PRK10580 proY putative proline-specific permease; Provisional
Probab=99.85 E-value=2.9e-20 Score=174.44 Aligned_cols=166 Identities=19% Similarity=0.280 Sum_probs=141.2
Q ss_pred cccccccchhhhHHhhhccccceeeecchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhccccccCCchHHhHHHH
Q psy9204 86 PVTGQRLVRLEGVSIIVGCIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTIGALCYAELGTCISRSGGDYAYILVA 165 (265)
Q Consensus 86 ~~l~r~l~~~~~~~l~i~~vig~gi~~~~~~~~~~~g~~~~~i~~~~i~~l~~~~~a~~~aEl~s~~P~~GG~y~~~~~~ 165 (265)
+++||+++.++..+++++.++|+|++..++.....+|+ ..+++|++++++.++.+++++|+++++|++||.|.|++|.
T Consensus 5 ~~l~r~L~~~~~~~i~vg~~IG~Gif~~~g~~~~~aG~--~~~l~~~i~~i~~~~~a~~~aEl~s~~P~~Gg~y~y~~~~ 82 (457)
T PRK10580 5 NKLKRGLSTRHIRFMALGSAIGTGLFYGSADAIKMAGP--SVLLAYIIGGVAAYIIMRALGEMSVHNPAASSFSRYAQEN 82 (457)
T ss_pred ccccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh--HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 46899999999999999999999999999998887665 3578899999999999999999999999999999999999
Q ss_pred hCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Q psy9204 166 FGELPAFLRLWVALLIMRPTTQAIVALTFAQYAIKPFFPDSELPDRAVLLLAAACLCVLTAVNCMSVSWAMQVQTLFTVG 245 (265)
Q Consensus 166 ~g~~~gf~~gw~~~l~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~l~~~~~in~~gvk~~~~i~~v~~~~ 245 (265)
+||.+||++||.+++ .+....+.....++.++.. +.|.. +. ....++++++.+.+|++|+|..+|+|.+.+.+
T Consensus 83 ~G~~~gf~~gw~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~--~~---~~~~~~~~~l~~~ln~~gv~~~~~~~~~~~~~ 155 (457)
T PRK10580 83 LGPLAGYITGWTYCF-EILIVAIADVTAFGIYMGV-WFPTV--PH---WIWVLSVVLIICAVNLMSVKVFGELEFWFSFF 155 (457)
T ss_pred cCcHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH-hCCCC--Ch---HHHHHHHHHHHHHHHHccchhHHHHHHHHHHH
Confidence 999999999999998 6666666666677777763 44432 22 23455566788999999999999999999999
Q ss_pred HHHHHHHHHHHHHHH
Q psy9204 246 KLVALFGIIAAGIGY 260 (265)
Q Consensus 246 ~i~~~~~~ii~g~~~ 260 (265)
|++.++++++.++..
T Consensus 156 ~~~~l~~~ii~~~~i 170 (457)
T PRK10580 156 KVATIIIMIVAGIGI 170 (457)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999998888877543
No 16
>TIGR03428 ureacarb_perm permease, urea carboxylase system. A number of bacteria obtain nitrogen by biotin- and ATP-dependent urea degradation system distinct from urease. The two characterized proteins of this system are the enzymes urea carboxylase and allophanate hydrolase, but other, uncharacterized proteins co-occur as genes encoded nearby in multiple organisms. This family includes predicted permeases of the amino acid permease family, likely to transport either urea or a compound from which urea is derived. It is found so far only Actinobacteria, whereas a number of other species with the urea carboxylase have an adjacent ABC transporter operon.
Probab=99.85 E-value=4.7e-20 Score=173.80 Aligned_cols=173 Identities=20% Similarity=0.240 Sum_probs=141.1
Q ss_pred ccccccccchhhhHHhhhccc-cceeeecchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhccccccCCchHHhHH
Q psy9204 85 LPVTGQRLVRLEGVSIIVGCI-IGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTIGALCYAELGTCISRSGGDYAYIL 163 (265)
Q Consensus 85 ~~~l~r~l~~~~~~~l~i~~v-ig~gi~~~~~~~~~~~g~~~~~i~~~~i~~l~~~~~a~~~aEl~s~~P~~GG~y~~~~ 163 (265)
+|++||+++.++.++++++.+ ++.|++..++..+..+|+ ..+++|+++++..++.+++++||++++|++||+|+|++
T Consensus 8 ~~~L~R~~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~Gp--~~~~~~li~~i~~l~~als~aEL~s~~P~aGG~Y~~~~ 85 (475)
T TIGR03428 8 QPQLHRKLGRYASFAAGFSFVSILTTIFQLFGFGYGFGGP--AFFWTWPVVFVGQLLVALNFAELAARYPISGAIYQWSR 85 (475)
T ss_pred ccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCc--HHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHH
Confidence 467999999999999999984 778999999888887665 46788999999999999999999999999999999999
Q ss_pred HHhCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhh------c--CCCCC--CchHHHHHHHHHHHHHHHHHHhhhhh
Q psy9204 164 VAFGELPAFLRLWVALLIMRPTTQAIVALTFAQYAIKP------F--FPDSE--LPDRAVLLLAAACLCVLTAVNCMSVS 233 (265)
Q Consensus 164 ~~~g~~~gf~~gw~~~l~~~~~~~a~~~~~~~~~l~~~------~--~~~~~--~~~~~~~~i~~~~l~~~~~in~~gvk 233 (265)
+.+||.+||++||.+++ .+....+........++... + .+++. .+.++..+++.+++++++.+|++|+|
T Consensus 86 ~~~g~~~gf~~gW~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~g~k 164 (475)
T TIGR03428 86 RMGGEVIGWFAGWFMII-AQIVTAAAAAIALQVVLPNIWSGFQIIGEDPTLTSPSGAANAVLLGSVLLVLTTVINCIGVE 164 (475)
T ss_pred HHcCccccHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhhhhhcccCccccCCCchHHHHHHHHHHHHHHHHHHHhhhh
Confidence 99999999999999998 66555555555544444221 1 11221 12356778888888999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9204 234 WAMQVQTLFTVGKLVALFGIIAAGIGY 260 (265)
Q Consensus 234 ~~~~i~~v~~~~~i~~~~~~ii~g~~~ 260 (265)
..+|+|++..+++++.++++++.++.+
T Consensus 165 ~~~~i~~~~~~~~i~~l~~iii~~~~~ 191 (475)
T TIGR03428 165 WMSRVNTIGVTCEIVGVLAVIGVLFTH 191 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999998888777766544
No 17
>PRK11049 D-alanine/D-serine/glycine permease; Provisional
Probab=99.84 E-value=1.1e-19 Score=171.12 Aligned_cols=168 Identities=17% Similarity=0.239 Sum_probs=144.8
Q ss_pred ccccccccchhhhHHhhhccccceeeecchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhccccccCCchHHhHHH
Q psy9204 85 LPVTGQRLVRLEGVSIIVGCIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTIGALCYAELGTCISRSGGDYAYILV 164 (265)
Q Consensus 85 ~~~l~r~l~~~~~~~l~i~~vig~gi~~~~~~~~~~~g~~~~~i~~~~i~~l~~~~~a~~~aEl~s~~P~~GG~y~~~~~ 164 (265)
++++||+++.++..++++|.++|+|+|..++.++..+|+ ..+++|++++++.++.+++++|+++..|..|+.|.|+++
T Consensus 15 ~~~l~r~l~~~~~~~i~vG~~IGsGif~~~g~~~~~aGp--~~i~~~~i~~i~~~~~~~s~aEl~s~~~~~~~~~~ya~~ 92 (469)
T PRK11049 15 EQSLRRNLTNRHIQLIAIGGAIGTGLFMGSGKTISLAGP--SIIFVYMIIGFMLFFVMRAMGELLLSNLEYKSFSDFASD 92 (469)
T ss_pred chhhhccCcHHHHHHHHHhhHHHhHHHHHhhHHHhhcCc--HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHH
Confidence 357999999999999999999999999999999988775 357789999999999999999999999999999999999
Q ss_pred HhCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Q psy9204 165 AFGELPAFLRLWVALLIMRPTTQAIVALTFAQYAIKPFFPDSELPDRAVLLLAAACLCVLTAVNCMSVSWAMQVQTLFTV 244 (265)
Q Consensus 165 ~~g~~~gf~~gw~~~l~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~l~~~~~in~~gvk~~~~i~~v~~~ 244 (265)
.+||.+||+.||.+++ .+....+..+..+..++.. ++|+. + .+.++.+++++++.+|++|+|..+++|++.+.
T Consensus 93 ~~g~~~gf~~gW~~~~-~~~~~~~a~~~a~~~~~~~-~~p~~--~---~~~~~~~~~~~~~~iN~~g~~~~~~i~~~~~~ 165 (469)
T PRK11049 93 LLGPWAGYFTGWTYWF-CWVVTGIADVVAITAYAQF-WFPDL--S---DWVASLAVVLLLLSLNLATVKMFGEMEFWFAM 165 (469)
T ss_pred HhCcHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH-hcCCC--c---HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 9999999999999998 5555555556667777763 44543 2 23455567788899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHh
Q psy9204 245 GKLVALFGIIAAGIGYL 261 (265)
Q Consensus 245 ~~i~~~~~~ii~g~~~~ 261 (265)
+|++.++.+++.++...
T Consensus 166 ~kl~~l~~~ii~g~~~~ 182 (469)
T PRK11049 166 IKIVAIVALIVVGLVMV 182 (469)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999998765
No 18
>TIGR03810 arg_ornith_anti arginine/ornithine antiporter. Members of this protein family are the arginine/ornithine antiporter, ArcD. This exchanger of ornithine for arginine occurs in a system with arginine deiminase, ornithine carbamoyltransferase, and carbamate kinase, with together turn arginine to ornithine with the generation of ATP and release of CO2.
Probab=99.84 E-value=8.8e-20 Score=171.63 Aligned_cols=169 Identities=25% Similarity=0.333 Sum_probs=137.4
Q ss_pred cccchhhhHHhhhccccceeeecchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhccccccC-CchHHhHHHHhCc
Q psy9204 90 QRLVRLEGVSIIVGCIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTIGALCYAELGTCISRS-GGDYAYILVAFGE 168 (265)
Q Consensus 90 r~l~~~~~~~l~i~~vig~gi~~~~~~~~~~~g~~~~~i~~~~i~~l~~~~~a~~~aEl~s~~P~~-GG~y~~~~~~~g~ 168 (265)
|+++++++.++.++.++|+|+|..|+.++..+| ++..+++|++++++.++.+++++|+++++|++ ||.|.|+++.+||
T Consensus 1 ~~lgl~~~~~l~vg~~IGsGif~~~~~~~~~ag-~~~~l~~w~i~~~~~~~~al~~aeL~s~~P~~gGG~y~y~~~~fG~ 79 (468)
T TIGR03810 1 KKLGLGALTALVVGSMIGSGIFSLPSDMAAGAA-AGAVLIGWVITGVGMLALAFSFQNLANKKPELDGGVYSYAKAGFGP 79 (468)
T ss_pred CCCCHHHHHHHHHHhHHhhHHHHhHHHHHHhhc-hHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCChhhhHHhHcCc
Confidence 689999999999999999999999999887765 44567789999999999999999999999996 5999999999999
Q ss_pred hhHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhcCCCCCC-chHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Q psy9204 169 LPAFLRLWVALLIMRPTTQAIVALTFAQYAIKPFFPDSEL-PDRAVLLLAAACLCVLTAVNCMSVSWAMQVQTLFTVGKL 247 (265)
Q Consensus 169 ~~gf~~gw~~~l~~~~~~~a~~~~~~~~~l~~~~~~~~~~-~~~~~~~i~~~~l~~~~~in~~gvk~~~~i~~v~~~~~i 247 (265)
..||+.+|.+|+ .+.............++. .++|.... ++.....++.+++++++++|++|+|..+|+|++.+++|+
T Consensus 80 ~~gf~~gw~~w~-~~~~~~~~~~~~~~~~~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~ln~~Gv~~~~~i~~i~~~~ki 157 (468)
T TIGR03810 80 FMGFISAWGYWL-SAWLGNVAYATLLFSTLG-YFFPIFGGGNNPPSIIGASVLLWCVHFLVLRGVEGAAFINTITTIAKL 157 (468)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH-HhcccccCCCcHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHH
Confidence 999999999998 443333333333444443 23443321 223445666777788999999999999999999999999
Q ss_pred HHHHHHHHHHHHHh
Q psy9204 248 VALFGIIAAGIGYL 261 (265)
Q Consensus 248 ~~~~~~ii~g~~~~ 261 (265)
++++++++.++...
T Consensus 158 ~~l~~~ii~~~~~~ 171 (468)
T TIGR03810 158 VPLFVFIVIGIFAF 171 (468)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999988887654
No 19
>PRK10435 cadB lysine/cadaverine antiporter; Provisional
Probab=99.84 E-value=1.4e-19 Score=168.91 Aligned_cols=167 Identities=22% Similarity=0.277 Sum_probs=136.7
Q ss_pred ccccccchhhhHHhhhccccceeeecchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhccccccCCchHHhHHHHh
Q psy9204 87 VTGQRLVRLEGVSIIVGCIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTIGALCYAELGTCISRSGGDYAYILVAF 166 (265)
Q Consensus 87 ~l~r~l~~~~~~~l~i~~vig~gi~~~~~~~~~~~g~~~~~i~~~~i~~l~~~~~a~~~aEl~s~~P~~GG~y~~~~~~~ 166 (265)
+.+|+++.+++.++.++.++|+|++.+|+.+.. +|+ ..+++|+++++.+++.+++++||++++|++||.|.|++| +
T Consensus 2 ~~~~~lg~~~~~~l~vg~~IGsGif~lp~~~a~-~G~--~~i~~wli~~~~~l~~al~~aEL~s~~P~~GG~y~y~~~-~ 77 (435)
T PRK10435 2 SSAKKIGLFACTGVVAGNMMGSGIALLPANLAS-IGS--IAIWGWIISIIGAMSLAYVYARLATKNPQQGGPIAYAGE-I 77 (435)
T ss_pred CCCCcCCHHHHHHHHHhhHHHHHHHHHHHHHHH-hHH--HHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCChhHHHHH-H
Confidence 457899999999999999999999999998654 453 467789999999999999999999999999999999999 8
Q ss_pred CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Q psy9204 167 GELPAFLRLWVALLIMRPTTQAIVALTFAQYAIKPFFPDSELPDRAVLLLAAACLCVLTAVNCMSVSWAMQVQTLFTVGK 246 (265)
Q Consensus 167 g~~~gf~~gw~~~l~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~l~~~~~in~~gvk~~~~i~~v~~~~~ 246 (265)
||.+||.++|.+|. ...............|+.. ++|.... ++...+++++++++++++|++|+|..+++|.+..+++
T Consensus 78 g~~~gf~~gw~~~~-~~~~~~~~~~~~~~~y~~~-~~p~~~~-~~~~~~~~~~i~~~~~~ln~~gvk~~~~i~~i~~~~~ 154 (435)
T PRK10435 78 SPAFGFQTGVLYYH-ANWIGNLAIGITAVSYLST-FFPVLND-PIPAGIACIAIVWVFTFVNMLGGTWVSRLTTIGLVLV 154 (435)
T ss_pred CcHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH-HccccCC-hHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 99999999999997 3334444555666677764 4554332 2344566777888899999999999999999999998
Q ss_pred HHHHHHHHHHHHHH
Q psy9204 247 LVALFGIIAAGIGY 260 (265)
Q Consensus 247 i~~~~~~ii~g~~~ 260 (265)
+++++.+++.++.+
T Consensus 155 li~~~~~~i~g~~~ 168 (435)
T PRK10435 155 LIPVVGTAIVGWHW 168 (435)
T ss_pred HHHHHHHHHHHHHH
Confidence 88877777666543
No 20
>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]
Probab=99.83 E-value=5e-19 Score=160.94 Aligned_cols=171 Identities=22% Similarity=0.282 Sum_probs=157.7
Q ss_pred ccccccccchhhhHHhhhccccceeeecchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhccccccCCchHHhHHH
Q psy9204 85 LPVTGQRLVRLEGVSIIVGCIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTIGALCYAELGTCISRSGGDYAYILV 164 (265)
Q Consensus 85 ~~~l~r~l~~~~~~~l~i~~vig~gi~~~~~~~~~~~g~~~~~i~~~~i~~l~~~~~a~~~aEl~s~~P~~GG~y~~~~~ 164 (265)
++++||.|+.++...+++|..+|+|.|...+.....+|+ ..++++++++++.+++.-+++||..+-|++|+.-+|+++
T Consensus 8 ~~~l~rgL~~RHIqlIAiGGaIGtGLFlGSg~~I~~AGP--SvlLaY~I~G~~~f~iMRaLGEm~~~~p~~gSF~~~a~~ 85 (462)
T COG1113 8 EQGLKRGLKNRHIQLIAIGGAIGTGLFLGSGSAIAMAGP--SVLLAYLIAGIFVFLIMRALGEMLVANPVSGSFSDYARK 85 (462)
T ss_pred chhhhhhhHHHHHHHHHHhhhhhhhhhcccchhhhhhCc--HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHH
Confidence 346999999999999999999999999999999999885 355679999999999999999999999999999999999
Q ss_pred HhCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Q psy9204 165 AFGELPAFLRLWVALLIMRPTTQAIVALTFAQYAIKPFFPDSELPDRAVLLLAAACLCVLTAVNCMSVSWAMQVQTLFTV 244 (265)
Q Consensus 165 ~~g~~~gf~~gw~~~l~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~l~~~~~in~~gvk~~~~i~~v~~~ 244 (265)
.+||+.||++||.||+ .+.....+.....+.|++ .++|+. | +|+.+++++++...+|+.++|..+.++..+..
T Consensus 86 ~lG~~Agf~tgW~YW~-~wv~v~~ae~tAi~~y~~-~WfP~v--P---~Wv~al~~~~l~~~~NL~sVk~FGE~EfWfAl 158 (462)
T COG1113 86 YLGPWAGFLTGWTYWF-FWVLVGIAELTAIGIYLQ-FWFPDV--P---QWVFALAAVVLLLAVNLISVKVFGELEFWFAL 158 (462)
T ss_pred HhcchHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH-HhcCCC--c---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999 888889999999999998 477775 3 56788888899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhcC
Q psy9204 245 GKLVALFGIIAAGIGYLGIG 264 (265)
Q Consensus 245 ~~i~~~~~~ii~g~~~~~~g 264 (265)
+|++.++.++++|+..+.+|
T Consensus 159 IKV~aIi~~Iv~G~~ll~~g 178 (462)
T COG1113 159 IKVAAIIAFIVVGIVLLFGG 178 (462)
T ss_pred HHHHHHHHHHHHHHHHHhhc
Confidence 99999999999999998765
No 21
>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism]
Probab=99.82 E-value=2.2e-19 Score=166.26 Aligned_cols=171 Identities=20% Similarity=0.243 Sum_probs=153.5
Q ss_pred ccccccchhhhHHhhhccccceeeecchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhccccccCCchHHhHHHHh
Q psy9204 87 VTGQRLVRLEGVSIIVGCIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTIGALCYAELGTCISRSGGDYAYILVAF 166 (265)
Q Consensus 87 ~l~r~l~~~~~~~l~i~~vig~gi~~~~~~~~~~~g~~~~~i~~~~i~~l~~~~~a~~~aEl~s~~P~~GG~y~~~~~~~ 166 (265)
++||+|+.+++.++++|..+|+|.|+..+..+..+|+ +..+++|++.+++..++..|+.||+..+|.+|+...|+.|..
T Consensus 41 ~lkR~LK~RHl~MIAiGG~IGTGLfvgsG~~l~~aGP-~g~li~y~i~G~~vy~vm~sLGEma~~~P~sGsF~~ya~rfv 119 (541)
T COG0833 41 ELKRSLKSRHLQMIAIGGAIGTGLFVGSGKALSQAGP-AGLLIAYLIIGIMVYFVMQSLGELAVFYPVSGSFSTYATRFV 119 (541)
T ss_pred hhhhhhhHHHHHHHHhccccccceeeecchhhhccCc-HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchhhhhhhhc
Confidence 6999999999999999999999999999999988775 457789999999999999999999999999999999999999
Q ss_pred CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Q psy9204 167 GELPAFLRLWVALLIMRPTTQAIVALTFAQYAIKPFFPDSELPDRAVLLLAAACLCVLTAVNCMSVSWAMQVQTLFTVGK 246 (265)
Q Consensus 167 g~~~gf~~gw~~~l~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~l~~~~~in~~gvk~~~~i~~v~~~~~ 246 (265)
+|.+||..||.||+ .|....+....+.+..++ .+.|+. .| ......++.+++..+|++++|..+..+..+..+|
T Consensus 120 dpa~GFa~gWnYw~-~w~v~~~~El~aa~~vi~-yW~p~~-v~---~~~w~~iF~~~i~~iN~~~Vk~fGE~Efw~s~iK 193 (541)
T COG0833 120 DPAFGFALGWNYWL-NWAVTLPLELTAASLVIQ-YWFPDT-VP---PWIWIAIFLVLIFLLNLFGVKGFGETEFWFSSIK 193 (541)
T ss_pred CchHHHHHHHHHHH-HHHHHhhHHHHHHHHhhh-hhcCCC-CC---hHHHHHHHHHHHHHHHHhcccccceehHHHHHHH
Confidence 99999999999999 888888888888877776 455543 22 3466677788889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhcC
Q psy9204 247 LVALFGIIAAGIGYLGIG 264 (265)
Q Consensus 247 i~~~~~~ii~g~~~~~~g 264 (265)
++.++.+++.|++...+|
T Consensus 194 V~~ii~Fii~gii~~~Gg 211 (541)
T COG0833 194 VLTIIGFIILGIIIICGG 211 (541)
T ss_pred HHHHHHHHHHHHHHhcCC
Confidence 999999999999988765
No 22
>TIGR00913 2A0310 amino acid permease (yeast).
Probab=99.82 E-value=4.6e-19 Score=167.10 Aligned_cols=166 Identities=17% Similarity=0.138 Sum_probs=138.8
Q ss_pred ccccchhhhHHhhhccccceeeecchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhcccccc-CCchHHhHHHHhC
Q psy9204 89 GQRLVRLEGVSIIVGCIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTIGALCYAELGTCISR-SGGDYAYILVAFG 167 (265)
Q Consensus 89 ~r~l~~~~~~~l~i~~vig~gi~~~~~~~~~~~g~~~~~i~~~~i~~l~~~~~a~~~aEl~s~~P~-~GG~y~~~~~~~g 167 (265)
||+|+.+++.+++++.++|+|++..++..+..+|+ ...+++|++++++.++.+++++||++++|+ .||.|.|+++.+|
T Consensus 1 ~r~L~~~~~~~l~vg~~IGsGif~~~~~~~~~~Gp-~~~i~~~~i~~~~~~~~a~~~aEl~s~~P~~gG~~~~~~~~~~g 79 (478)
T TIGR00913 1 KKSLKQRHIQMIALGGTIGTGLLVGSGTALATGGP-AGLLIGYAIMGSIIYCVMQSLGEMATFYPVVSGSFATYASRFVD 79 (478)
T ss_pred CCCCcHHHHHHHHHhccccchhhhcchhHHHhcCC-HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHcC
Confidence 68999999999999999999999999999988764 345778999999999999999999999996 5567789999999
Q ss_pred chhHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Q psy9204 168 ELPAFLRLWVALLIMRPTTQAIVALTFAQYAIKPFFPDSELPDRAVLLLAAACLCVLTAVNCMSVSWAMQVQTLFTVGKL 247 (265)
Q Consensus 168 ~~~gf~~gw~~~l~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~l~~~~~in~~gvk~~~~i~~v~~~~~i 247 (265)
|..||++||.+|+ .+....+......+.++.. +.+..+ .+ ....+++++++++|++|+|..+|+|++.+.+|+
T Consensus 80 ~~~gf~~gw~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~--~~---~~~~~~~~~~~~in~~gv~~~~~~~~~~~~~ki 152 (478)
T TIGR00913 80 PAFGFAVGWNYWL-QWLIVLPLELVTASMTIQY-WTDKVN--PA---VWIAIFYVFIVIINLFGVKGYGEAEFWFSSIKI 152 (478)
T ss_pred cHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH-cCCCCC--HH---HHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence 9999999999999 6777777777777777763 434322 11 222345567889999999999999999999999
Q ss_pred HHHHHHHHHHHHHhh
Q psy9204 248 VALFGIIAAGIGYLG 262 (265)
Q Consensus 248 ~~~~~~ii~g~~~~~ 262 (265)
+.++.+++.++....
T Consensus 153 ~~l~~~ii~~i~~~~ 167 (478)
T TIGR00913 153 LAIIGFIILSIILNC 167 (478)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999988888877653
No 23
>TIGR00908 2A0305 ethanolamine permease. The three genes used as the seed for this model (from Burkholderia pseudomallei, Pseudomonas aeruginosa and Clostridium acetobutylicum are all adjacent to genes for the catabolism of ethanolamine. Most if not all of the hits to this model have a similar arrangement of genes. This group is a member of the Amino Acid-Polyamine-Organocation (APC) Superfamily.
Probab=99.81 E-value=1.1e-18 Score=163.09 Aligned_cols=163 Identities=25% Similarity=0.243 Sum_probs=135.3
Q ss_pred ccccccccchhhhHHhhhccccceeeecchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhccccccCCchHHhHHH
Q psy9204 85 LPVTGQRLVRLEGVSIIVGCIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTIGALCYAELGTCISRSGGDYAYILV 164 (265)
Q Consensus 85 ~~~l~r~l~~~~~~~l~i~~vig~gi~~~~~~~~~~~g~~~~~i~~~~i~~l~~~~~a~~~aEl~s~~P~~GG~y~~~~~ 164 (265)
++++||+++.++.++++++.+++ |.+...+..+...|+ ...+++|++++++.++.+++++|+++++|++||.|.|+++
T Consensus 2 ~~~l~r~l~~~~~~~l~~~~~ig-g~~~~~~~~~~~~G~-~~~~~~~~i~~~~~~~~a~~~aEl~s~~P~~Gg~y~~~~~ 79 (442)
T TIGR00908 2 HRQLKKTLATWQLWGIGVGYVIS-GDYAGWNFGLAQGGW-GGFVVATLLVATMYLTFCFSLAELSTMIPTAGGGYGFARR 79 (442)
T ss_pred CchhhccCCHHHHHHhHHHHHhh-ccchhHhhHHHHhCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 35799999999999999999887 666665554555443 3456778999999999999999999999999999999999
Q ss_pred HhCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Q psy9204 165 AFGELPAFLRLWVALLIMRPTTQAIVALTFAQYAIKPFFPDSELPDRAVLLLAAACLCVLTAVNCMSVSWAMQVQTLFTV 244 (265)
Q Consensus 165 ~~g~~~gf~~gw~~~l~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~l~~~~~in~~gvk~~~~i~~v~~~ 244 (265)
.+||..||+.+|.+++ .+....+..+..+++|+.. ++|.. + .+.+..+++++.+++|++|+|..+|+|.+..+
T Consensus 80 ~~G~~~gf~~gw~~~~-~~~~~~~~~a~~~~~~l~~-~~p~~--~---~~~~~~~~~~~~~~ln~~g~~~~~~i~~~~~~ 152 (442)
T TIGR00908 80 AFGPWGGFLAGTAILI-EFAFAPPAIACFIGAYCES-LFPVG--P---GWLAALVFYIVFIGINILGVGEAAKLEFVVTA 152 (442)
T ss_pred HhCcHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH-HhccC--c---hhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 9999999999999998 7778888888889999875 44542 2 23566677788899999999999999999999
Q ss_pred HHHHHHHHHHHH
Q psy9204 245 GKLVALFGIIAA 256 (265)
Q Consensus 245 ~~i~~~~~~ii~ 256 (265)
++++.++++++.
T Consensus 153 ~~~~~l~i~~~~ 164 (442)
T TIGR00908 153 VAIIALGVFIGA 164 (442)
T ss_pred HHHHHHHHHHHH
Confidence 998876665544
No 24
>TIGR00909 2A0306 amino acid transporter.
Probab=99.80 E-value=1.4e-18 Score=161.49 Aligned_cols=170 Identities=27% Similarity=0.358 Sum_probs=142.6
Q ss_pred cccccchhhhHHhhhccccceeeecchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhccccccCCchHHhHHHHhC
Q psy9204 88 TGQRLVRLEGVSIIVGCIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTIGALCYAELGTCISRSGGDYAYILVAFG 167 (265)
Q Consensus 88 l~r~l~~~~~~~l~i~~vig~gi~~~~~~~~~~~g~~~~~i~~~~i~~l~~~~~a~~~aEl~s~~P~~GG~y~~~~~~~g 167 (265)
+||+++.++.+++.++.++|+|++..++......|+ ..+++|++++++.++.+++++|+++++|++||.|.|++|.+|
T Consensus 1 l~r~l~~~~~~~~~i~~~ig~gi~~~~~~~~~~~G~--~~~l~~li~~~~~~~~a~~~~el~~~~p~~Gg~y~~~~~~~G 78 (429)
T TIGR00909 1 LSRELGLFDLTMLGIGAMIGTGIFVVTGIAAGKAGP--AVILSFVLAGLTALFIALVYAELAAMLPVAGSPYTYAYEAMG 78 (429)
T ss_pred CCccccHHHHHHHHHhhhhcchHHHhHHHHHHHcCC--HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcceeeHHHHhC
Confidence 589999999999999999999999999887776553 355779999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhcCCC--CCCchHH---------HHHHHHHHHHHHHHHHhhhhhHHH
Q psy9204 168 ELPAFLRLWVALLIMRPTTQAIVALTFAQYAIKPFFPD--SELPDRA---------VLLLAAACLCVLTAVNCMSVSWAM 236 (265)
Q Consensus 168 ~~~gf~~gw~~~l~~~~~~~a~~~~~~~~~l~~~~~~~--~~~~~~~---------~~~i~~~~l~~~~~in~~gvk~~~ 236 (265)
|..|++.+|.+++ .+....+..+..+++++...+ +. .+.|.+. ..+..++++++++.+|++|+|..+
T Consensus 79 ~~~g~~~gw~~~~-~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~g~~~~~ 156 (429)
T TIGR00909 79 ELTAFIIGWSLWL-EYGVAVAAVAVGWGGYLQEFL-PGVGLDLPAVLTAKPGNGGVFNLPALLIVLFLTYILYLGAKESG 156 (429)
T ss_pred cHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH-HHccccCchhhhcCCcccccccHHHHHHHHHHHHHHHhCcHHHH
Confidence 9999999999998 777888888888888876533 21 1112111 113466788899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q psy9204 237 QVQTLFTVGKLVALFGIIAAGIGYL 261 (265)
Q Consensus 237 ~i~~v~~~~~i~~~~~~ii~g~~~~ 261 (265)
|+|.+.+.++++.++++++.++.+.
T Consensus 157 ~~~~v~~~~~i~~l~~~~~~~~~~~ 181 (429)
T TIGR00909 157 KVNDILVVLKVAALLLFAALGAIHF 181 (429)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHhhC
Confidence 9999999999999988877776653
No 25
>PRK11021 putative transporter; Provisional
Probab=99.79 E-value=2.9e-18 Score=158.77 Aligned_cols=151 Identities=22% Similarity=0.302 Sum_probs=123.9
Q ss_pred cchhhhHHhhhccccceeeecchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhccccccCCchHHhHHHHhCchhH
Q psy9204 92 LVRLEGVSIIVGCIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTIGALCYAELGTCISRSGGDYAYILVAFGELPA 171 (265)
Q Consensus 92 l~~~~~~~l~i~~vig~gi~~~~~~~~~~~g~~~~~i~~~~i~~l~~~~~a~~~aEl~s~~P~~GG~y~~~~~~~g~~~g 171 (265)
+++++..++.++.++|+|+|..|+.++..+|+ ..+++|++++++.++.+++++|+++++|++||.|.|+++.+||.+|
T Consensus 1 ~g~~~~~~l~~g~~IGsGif~~~g~~~~~aG~--~~~~~~~i~~~~~~~~al~~aEl~s~~P~aGG~y~y~~~~~G~~~g 78 (410)
T PRK11021 1 LGLWQGIGLLSTSLLGTGVFAVPALAALVAGN--NSLWAWPLLILLIFPIAIVFARLGRHFPHAGGPAHFVGMAFGPRLG 78 (410)
T ss_pred CcHHHHHHHHHHHHHhhHHHHhHHHHHHhcCc--hHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHhHHHHhCchhH
Confidence 57889999999999999999999999998775 4678899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Q psy9204 172 FLRLWVALLIMRPTTQAIVALTFAQYAIKPFFPDSELPDRAVLLLAAACLCVLTAVNCMSVSWAMQVQTLFTVGKLVA 249 (265)
Q Consensus 172 f~~gw~~~l~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~l~~~~~in~~gvk~~~~i~~v~~~~~i~~ 249 (265)
|+.+|.+++ .+............+++.. ..|. +.+....+..+++++.+.+|++|+|..+|+|.+..++++..
T Consensus 79 f~~gw~~~~-~~~~~~~~~~~~~~~~~~~-~~~~---~~~~~~~~~~~~~~~~~~ln~~Gv~~~~~~~~~~~~~~~~i 151 (410)
T PRK11021 79 RVTGWLFLS-VIPVGLPAALQIAAGFGQA-LFGW---SSWQLLLAELLTLALLWLLNLRGASSSANLQTVIALLIVAL 151 (410)
T ss_pred HHHHHHHHH-HHHhhHHHHHHHHHHHHHH-HcCC---CCchHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 999999997 4444444333344456553 3332 22344567777888899999999999999999988655443
No 26
>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A ....
Probab=99.79 E-value=4.9e-18 Score=157.53 Aligned_cols=166 Identities=31% Similarity=0.500 Sum_probs=140.8
Q ss_pred cchhhhHHhhhccccceeeecchHHHHHhcccchHHHHHHHHHHHHH-HHHHHHHHHhccccccCCchHHhHHHHhCchh
Q psy9204 92 LVRLEGVSIIVGCIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLS-TIGALCYAELGTCISRSGGDYAYILVAFGELP 170 (265)
Q Consensus 92 l~~~~~~~l~i~~vig~gi~~~~~~~~~~~g~~~~~i~~~~i~~l~~-~~~a~~~aEl~s~~P~~GG~y~~~~~~~g~~~ 170 (265)
+++++..++.++.++|++++..+ .....|. ..++.|++++++. ++.+++|+|+++++|++||.|.|+++.+||++
T Consensus 1 l~~~~~~~l~~~~~~g~gi~~~~--~~~~~G~--~~~~~~~i~~~~~~l~~a~~~~el~~~~p~~GG~y~~~~~~~g~~~ 76 (426)
T PF13520_consen 1 LGLFSAIALVIGSIIGSGIFFSP--AAASAGP--SAILAWIIAALLFFLPIALSYAELSSAYPSAGGIYVWVSRAFGPFW 76 (426)
T ss_dssp B-HHHHHHHHHHCHHTTTTTTHH--HHTCTGC--HHHHHHHHHHHHHHHHHHHHHHHHHTTTTSSTTHHHHHHHHH-HHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHH--HHHHHhH--HHHHHHHHHHHHHHHHHHHHHHHHhccCCCcCeeeehhhhcccccc
Confidence 57899999999999999988877 3444343 3666778888877 89999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH-HH
Q psy9204 171 AFLRLWVALLIMRPTTQAIVALTFAQYAIKPFFPDSELPDRAVLLLAAACLCVLTAVNCMSVSWAMQVQTLFTVGKL-VA 249 (265)
Q Consensus 171 gf~~gw~~~l~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~l~~~~~in~~gvk~~~~i~~v~~~~~i-~~ 249 (265)
|++.+|.+++ .+....+..+..+.+++...+.++.+..++...+++++++++.+.+|++|.|..+|++++.+.+++ ..
T Consensus 77 g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~i~~~ 155 (426)
T PF13520_consen 77 GFIVGWLYWV-AYILSLASVASSFASYLLSLFGPDLNPSPWPQFLIAIILILLFTLLNLLGIKLSGKIQNILTVIKIVIP 155 (426)
T ss_dssp HHHHHHHHHH-HHHHHHHHHHHHHHHHHTTTTTGGGTCSHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHH
T ss_pred hhcccceeEE-EeeccccccccchhhhhhhccccccccccchheeeeecccccceEeeechhhhhhhhhhhhhhhhhhhh
Confidence 9999999999 777778788888999998766555555567888999999999999999999999999999999999 67
Q ss_pred HHHHHHHHHHHhh
Q psy9204 250 LFGIIAAGIGYLG 262 (265)
Q Consensus 250 ~~~~ii~g~~~~~ 262 (265)
++++++.++....
T Consensus 156 l~~~i~~~~~~~~ 168 (426)
T PF13520_consen 156 LLVLIILGIVSFS 168 (426)
T ss_dssp HHHHHHHHHHSTT
T ss_pred hhhheeEEEeeec
Confidence 7888888877654
No 27
>PRK10197 gamma-aminobutyrate transporter; Provisional
Probab=99.79 E-value=3e-18 Score=160.34 Aligned_cols=153 Identities=19% Similarity=0.263 Sum_probs=130.1
Q ss_pred hhhccccceeeecchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhccccccCCchHHhHHHHhCchhHHHHHHHHH
Q psy9204 100 IIVGCIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTIGALCYAELGTCISRSGGDYAYILVAFGELPAFLRLWVAL 179 (265)
Q Consensus 100 l~i~~vig~gi~~~~~~~~~~~g~~~~~i~~~~i~~l~~~~~a~~~aEl~s~~P~~GG~y~~~~~~~g~~~gf~~gw~~~ 179 (265)
+++|.++|+|+|..++..+..+|+ ..+++|++++++.++.+++++||++++|++||.|.|++|.+||.+||..+|.+|
T Consensus 2 ~~ig~~IGsGif~~~g~~~~~aG~--~~ll~~~i~gi~~~~~al~~aEL~s~~P~~Gg~y~y~~~~~G~~~gf~~gw~~~ 79 (446)
T PRK10197 2 LSIAGVIGASLFVGSSVAIAEAGP--AVLLAYLFAGLLVVMIMRMLAEMAVATPDTGSFSTYADKAIGRWAGYTIGWLYW 79 (446)
T ss_pred eeecchhHhHHHHHhHHHHHhcCh--HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHcChHHHHHHHHHHH
Confidence 567889999999999999988774 467889999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhHHHHHHHHHHHHhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9204 180 LIMRPTTQAIVALTFAQYAIKPFFPDSELPDRAVLLLAAACLCVLTAVNCMSVSWAMQVQTLFTVGKLVALFGIIAAGIG 259 (265)
Q Consensus 180 l~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~l~~~~~in~~gvk~~~~i~~v~~~~~i~~~~~~ii~g~~ 259 (265)
+ .+....+......+.++.. +.|+. ....++.+++++.+.+|++|+|..+++|.+.+.+|++.++.+++.++.
T Consensus 80 ~-~~~~~~~~~~~~~~~~~~~-~~~~~-----~~~~~~~~~l~~~~~lN~~gv~~~~~i~~~~~~~ki~~li~~ii~~~~ 152 (446)
T PRK10197 80 W-FWVLVIPLEANIAAMILHS-WVPGI-----PIWLFSLVITLALTGSNLLSVKNYGEFEFWLALCKVIAILAFIFLGAV 152 (446)
T ss_pred H-HHHHHHHHHHHHHHHHHHh-ccccC-----cHHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 8 6656666555555555543 33322 245778888899999999999999999999999999999999888876
Q ss_pred Hh
Q psy9204 260 YL 261 (265)
Q Consensus 260 ~~ 261 (265)
..
T Consensus 153 ~~ 154 (446)
T PRK10197 153 AI 154 (446)
T ss_pred Hh
Confidence 44
No 28
>TIGR00930 2a30 K-Cl cotransporter.
Probab=99.78 E-value=3.4e-18 Score=171.56 Aligned_cols=170 Identities=19% Similarity=0.292 Sum_probs=146.8
Q ss_pred ccccccchhhhHHhh-hccccceeeecchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhccc-cccCCchHHhHHH
Q psy9204 87 VTGQRLVRLEGVSII-VGCIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTIGALCYAELGTC-ISRSGGDYAYILV 164 (265)
Q Consensus 87 ~l~r~l~~~~~~~l~-i~~vig~gi~~~~~~~~~~~g~~~~~i~~~~i~~l~~~~~a~~~aEl~s~-~P~~GG~y~~~~~ 164 (265)
.-+|+++++..+.+. ++.++|+++|..++.++..+|. +.+++.|+++++++++.++||+|+++. +|++||.|.|++|
T Consensus 73 ~~~~~lG~~~GV~~~~~~nIiGv~iFlr~~~Vvg~aG~-~~sll~~~la~~vtlltaLS~seiaTng~p~aGG~Y~yisr 151 (953)
T TIGR00930 73 AGAVKFGWVMGVLVPCLLNIWGVILFLRLSWIVGQAGI-GLSLLIILLCCCVTTITGLSMSAIATNGVVKGGGAYYLISR 151 (953)
T ss_pred CCCcccceeEeeeHhhhHhHheeeeeeeHHHHHHhhhH-HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHH
Confidence 456899999999998 9999999999999999988883 456777999999999999999999998 9999999999999
Q ss_pred HhCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhcCCC----CCCchHHHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Q psy9204 165 AFGELPAFLRLWVALLIMRPTTQAIVALTFAQYAIKPFFPD----SELPDRAVLLLAAACLCVLTAVNCMSVSWAMQVQT 240 (265)
Q Consensus 165 ~~g~~~gf~~gw~~~l~~~~~~~a~~~~~~~~~l~~~~~~~----~~~~~~~~~~i~~~~l~~~~~in~~gvk~~~~i~~ 240 (265)
.+||.+|+..||.+++ ......+..+.++++++...+.+. ...+.....+++.+++++++++|++|+|..+|+|.
T Consensus 152 alGp~~Gf~iG~~~~l-a~~va~A~~~~Gf~eyl~~lf~~~~~~~~~~~~~~~~iia~i~l~ll~~In~~Gvk~~ak~q~ 230 (953)
T TIGR00930 152 SLGPEFGGSIGLIFAF-ANAVAVAMYVVGFAETVLDLLRENGSKIMVDPINDIRIYGTVTVVVLLGISFAGMEWENKAQV 230 (953)
T ss_pred HhCcHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhhcccccccCccccchHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 9999999999999998 778888999999999998643211 01121224578888999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy9204 241 LFTVGKLVALFGIIAAGI 258 (265)
Q Consensus 241 v~~~~~i~~~~~~ii~g~ 258 (265)
++++++++.++.+++.++
T Consensus 231 vl~vi~ll~ll~~iig~~ 248 (953)
T TIGR00930 231 LFLVIVLLSILNIFVGTI 248 (953)
T ss_pred HHHHHHHHHHHHHHheee
Confidence 999999999888877654
No 29
>TIGR00907 2A0304 amino acid permease (GABA permease).
Probab=99.78 E-value=3.4e-18 Score=161.40 Aligned_cols=173 Identities=16% Similarity=0.157 Sum_probs=136.9
Q ss_pred ccccccccchhhhHHhhhcccc-ceeeecchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhccccccCCchHHhHH
Q psy9204 85 LPVTGQRLVRLEGVSIIVGCII-GSGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTIGALCYAELGTCISRSGGDYAYIL 163 (265)
Q Consensus 85 ~~~l~r~l~~~~~~~l~i~~vi-g~gi~~~~~~~~~~~g~~~~~i~~~~i~~l~~~~~a~~~aEl~s~~P~~GG~y~~~~ 163 (265)
++++||+++.++.++++++.+. ..+++...+......|+ ...+++|++++++.++.+++++||++++|++||+|+|++
T Consensus 7 ~~~l~r~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~Gp-~~~i~~~~i~gi~~l~~~~~~aEl~s~~P~~Gg~y~~~~ 85 (482)
T TIGR00907 7 KPELKREFSLWSIFGFAFSISNSWTGISTTYNYGLSSGGA-MSIVWGWIIAGAGSICIALSLAELSSAYPTSGGQYFWSA 85 (482)
T ss_pred cceeecccchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCc-cchhHHHHHHHHHHHHHHHHHHHHHhhCCCCccHHHHHH
Confidence 4579999999999999999652 24555555555555454 346778999999999999999999999999999999999
Q ss_pred HHhC----chhHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhc---CCC--CCCchHHHHHHHHHHHHHHHHHHhhhhhH
Q psy9204 164 VAFG----ELPAFLRLWVALLIMRPTTQAIVALTFAQYAIKPF---FPD--SELPDRAVLLLAAACLCVLTAVNCMSVSW 234 (265)
Q Consensus 164 ~~~g----~~~gf~~gw~~~l~~~~~~~a~~~~~~~~~l~~~~---~~~--~~~~~~~~~~i~~~~l~~~~~in~~gvk~ 234 (265)
|.+| +..||++||.+++ .+....+......++++...+ .+. +.+++|...++..+++++++.+|++|+|.
T Consensus 86 ~~~g~~~g~~~~f~~gW~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~in~~g~k~ 164 (482)
T TIGR00907 86 KLAPPRQMPFASWMTGWFNLA-GQVAGTASTDLSVAQLILGIVSLTTPGREYIPTRWHIFGIMIGIHLIHALINSLPTKW 164 (482)
T ss_pred HhcccccccceeHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhcCCCCCccccCchhhhhHHHHHHHHHHHHHhhHhH
Confidence 8876 6789999999998 777777777777777765422 222 33445667778888899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9204 235 AMQVQTLFTVGKLVALFGIIAAGIG 259 (265)
Q Consensus 235 ~~~i~~v~~~~~i~~~~~~ii~g~~ 259 (265)
.++++++..+++++.++++++..+.
T Consensus 165 ~~~~~~~~~~~~i~~~~~~~i~~l~ 189 (482)
T TIGR00907 165 LPRITSSAAYWSLLGFLTICITLLA 189 (482)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhc
Confidence 9999999999998888766555443
No 30
>KOG1289|consensus
Probab=99.77 E-value=2.7e-18 Score=158.81 Aligned_cols=172 Identities=19% Similarity=0.213 Sum_probs=143.1
Q ss_pred ccccccccchhhhHHhhhccccc-eeeecchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhccccccCCchHHhHH
Q psy9204 85 LPVTGQRLVRLEGVSIIVGCIIG-SGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTIGALCYAELGTCISRSGGDYAYIL 163 (265)
Q Consensus 85 ~~~l~r~l~~~~~~~l~i~~vig-~gi~~~~~~~~~~~g~~~~~i~~~~i~~l~~~~~a~~~aEl~s~~P~~GG~y~~~~ 163 (265)
+|++||++++++.++.+++.+-. .++-.....-+.+ |+++..+++|++++.+.++++++++|++|++|.+||.|.|+.
T Consensus 43 kqef~R~fs~~s~fg~sFs~~g~~~~i~tsm~~gl~~-gG~~~~vwgwlIa~~~~i~va~slaEl~Sa~PtsGgLy~waa 121 (550)
T KOG1289|consen 43 KQELKREFSLFSIFGISFSLMGLLPGIATSMAYGLGS-GGPPTLVWGWLIAGFFSICVALSLAELCSAMPTSGGLYFWAA 121 (550)
T ss_pred chhhhhhhhHHHHHHHHHHHhcchhhhhhheeecccc-CChHHHHHHHHHHHHHHHHHHhHHHHHHhhCCCCCcHHHHHH
Confidence 47899999999999999887422 1222221121233 334457788999999999999999999999999999999998
Q ss_pred ----HHhCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhc---CCCCCCchHHHHHHHHHHHHHHHHHHhhhhhHHH
Q psy9204 164 ----VAFGELPAFLRLWVALLIMRPTTQAIVALTFAQYAIKPF---FPDSELPDRAVLLLAAACLCVLTAVNCMSVSWAM 236 (265)
Q Consensus 164 ----~~~g~~~gf~~gw~~~l~~~~~~~a~~~~~~~~~l~~~~---~~~~~~~~~~~~~i~~~~l~~~~~in~~gvk~~~ 236 (265)
++++|..+|++||...+ ++....++...+.++.+.... .|++.++.++++.+..+++++..++|..+.|..+
T Consensus 122 ~lap~k~~~~~sw~~Gw~~~~-g~~~~~aSi~~S~A~~i~~~v~l~np~y~~~~~~~~~v~~ai~~v~~lln~~p~r~l~ 200 (550)
T KOG1289|consen 122 VLAPPKYGPFASWVTGWLNYL-GQATGVASITYSLAQLILGAVSLTNPNYEPTNYHQFGVFEAILFVHGLLNSLPTRVLA 200 (550)
T ss_pred HhcCcchhhHHHHHHHHHHHH-HHHhhchhhhHHHHHHHHHHHhhcCCCCcccceEeehHHHHHHHHHHHHhcCCcHHHH
Confidence 77899999999999998 888999999999999887543 4777788899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy9204 237 QVQTLFTVGKLVALFGIIAAGI 258 (265)
Q Consensus 237 ~i~~v~~~~~i~~~~~~ii~g~ 258 (265)
|++.+...+.++.+++..|.-.
T Consensus 201 ~I~~~~~~~~ll~~~i~~I~ll 222 (550)
T KOG1289|consen 201 RINSVSVYLNLLFLVILMITLL 222 (550)
T ss_pred HHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999998887766543
No 31
>KOG1286|consensus
Probab=99.74 E-value=6.7e-18 Score=160.24 Aligned_cols=169 Identities=20% Similarity=0.245 Sum_probs=132.1
Q ss_pred cccccccchhhhHHhhhccccceeeecchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhcccccc-CCchHHhHHH
Q psy9204 86 PVTGQRLVRLEGVSIIVGCIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTIGALCYAELGTCISR-SGGDYAYILV 164 (265)
Q Consensus 86 ~~l~r~l~~~~~~~l~i~~vig~gi~~~~~~~~~~~g~~~~~i~~~~i~~l~~~~~a~~~aEl~s~~P~-~GG~y~~~~~ 164 (265)
+++||+|+.+++.++++|.++|+|+|+..+.++...|++ ..+++|+++++.+++.++|++|++.++|. +|+.|.|++|
T Consensus 26 ~~lkR~L~~rhl~miaiGg~IGtGl~V~sG~~l~~~gp~-s~iisf~i~g~~~~~~~~~~~E~~~~~P~~aGs~~~ya~~ 104 (554)
T KOG1286|consen 26 TELKRCLKTRHLQMLAIGGTIGTGLFVGTGSALRNGGPP-SLLISFIIAGIAALLSALCLGEFAVRFPVSAGSFYTYAYR 104 (554)
T ss_pred chhhccCCcccEEEEEecceeccceEEeccHHHhccCCh-hHHHHHHHHHHHHHHHHHHHHHHheecccccccceeeeee
Confidence 589999999999999999999999999999999886654 46678999999999999999999999999 5999999999
Q ss_pred HhCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhc-------C-CCCCCchHHHHHHHHHHHHHHHHHHhhhhhHHH
Q psy9204 165 AFGELPAFLRLWVALLIMRPTTQAIVALTFAQYAIKPF-------F-PDSELPDRAVLLLAAACLCVLTAVNCMSVSWAM 236 (265)
Q Consensus 165 ~~g~~~gf~~gw~~~l~~~~~~~a~~~~~~~~~l~~~~-------~-~~~~~~~~~~~~i~~~~l~~~~~in~~gvk~~~ 236 (265)
..|+.+||..||.+++ .+....+.++.+.+.++.... . +..+...|.. .++.+...+|+.|+|..+
T Consensus 105 ~i~e~~aF~~gWny~l-~y~i~~a~e~~a~s~~~~~w~~~~~~~~~~~~~~~~~~~~-----~fla~~v~in~~gv~~~g 178 (554)
T KOG1286|consen 105 FVGESLAFAIGWNYLL-EYVIGLAAEARAWSSYLDYWTGASLIGILVDTVNPGGWIP-----DFLAFILIINLFGVLAYG 178 (554)
T ss_pred eeCcHHHHHHHHHHHH-HHHHhhhHHHHHHHHHHHHHhccccccccccCCCCCccHH-----HHHHHHHHHHHHHHhhcc
Confidence 9999999999999999 899999999999999998532 0 2333332333 334445555556655555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q psy9204 237 QVQTLFTVGKLVALFGIIAAGIGYL 261 (265)
Q Consensus 237 ~i~~v~~~~~i~~~~~~ii~g~~~~ 261 (265)
..+......|++..+-+++.+++..
T Consensus 179 e~ef~~~~~kvl~~v~~~Il~iVi~ 203 (554)
T KOG1286|consen 179 EVEFSLAFNKILTAVGFIILAIVII 203 (554)
T ss_pred ceeehHHHHHHHHHHHHHHhheeee
Confidence 5555555555555555555554443
No 32
>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism]
Probab=99.73 E-value=1.9e-16 Score=148.14 Aligned_cols=173 Identities=29% Similarity=0.473 Sum_probs=148.3
Q ss_pred cccccccchhh-hHHhhhccccceeeecchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhccccccCCchHHhHHH
Q psy9204 86 PVTGQRLVRLE-GVSIIVGCIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTIGALCYAELGTCISRSGGDYAYILV 164 (265)
Q Consensus 86 ~~l~r~l~~~~-~~~l~i~~vig~gi~~~~~~~~~~~g~~~~~i~~~~i~~l~~~~~a~~~aEl~s~~P~~GG~y~~~~~ 164 (265)
++++|+++.++ ......+.+++.|++..++..+... +...+.|++++++..+.+++++|+++++|++||.|.|+++
T Consensus 8 ~~~~~~l~~~~~~~~~~~~~~~~~gif~~~~~~~~~~---~~~~~~~li~~~~~~~~a~~~~el~~~~p~~GG~y~~~~~ 84 (466)
T COG0531 8 SELKKKLGLFDLLTALGVGSMIGSGIFALPGSAAGLA---PAAILAWLIAGIIILFLALSYAELSSAIPSAGGAYAYAKR 84 (466)
T ss_pred hhcCCCcchHHHHHHHHHHhhHhhhhHhhhhhHHHhc---hHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCeeeehhh
Confidence 46788999999 8888888898888988887776654 2344458999999999999999999999999999999999
Q ss_pred HhCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhcCCC---CCCchHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Q psy9204 165 AFGELPAFLRLWVALLIMRPTTQAIVALTFAQYAIKPFFPD---SELPDRAVLLLAAACLCVLTAVNCMSVSWAMQVQTL 241 (265)
Q Consensus 165 ~~g~~~gf~~gw~~~l~~~~~~~a~~~~~~~~~l~~~~~~~---~~~~~~~~~~i~~~~l~~~~~in~~gvk~~~~i~~v 241 (265)
.+||+.++.++|.+++ .+....+..+.....++.. +.+. ...+.+...+++.+++++.+.+|++|+|..++++.+
T Consensus 85 ~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ln~~G~~~~~~~~~~ 162 (466)
T COG0531 85 ALGPRLGFLAGWLYLL-AYVIALAAIAIGAASYLSY-LFPGPGLLSIGPLLIILIALALIALLTLLNLRGIKASAKINSI 162 (466)
T ss_pred hcCcchHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH-hcCcchhhcCCchHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 9999999999999999 7888888888888887764 4442 222227788999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhc
Q psy9204 242 FTVGKLVALFGIIAAGIGYLGI 263 (265)
Q Consensus 242 ~~~~~i~~~~~~ii~g~~~~~~ 263 (265)
..++++++++++++.++.+...
T Consensus 163 ~~~~~i~~~i~~~i~~~~~~~~ 184 (466)
T COG0531 163 ITILKIIILLIFIILGLFAFGF 184 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHhCc
Confidence 9999999999999998887654
No 33
>PRK15238 inner membrane transporter YjeM; Provisional
Probab=99.65 E-value=8.7e-15 Score=138.78 Aligned_cols=159 Identities=17% Similarity=0.169 Sum_probs=106.2
Q ss_pred ccccccchhhhHHhhhccccceeeecchHHHHHhcccchHHHHHHHHHHHH-HHHHHHHHHHhcccccc-CCchHHhHHH
Q psy9204 87 VTGQRLVRLEGVSIIVGCIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLL-STIGALCYAELGTCISR-SGGDYAYILV 164 (265)
Q Consensus 87 ~l~r~l~~~~~~~l~i~~vig~gi~~~~~~~~~~~g~~~~~i~~~~i~~l~-~~~~a~~~aEl~s~~P~-~GG~y~~~~~ 164 (265)
+++|+++++++..+.++.+++.+. .+.. ....|+ ..++.|++++++ .++.+++++||++++|+ +||.|+|+++
T Consensus 4 ~~~~~l~~~~l~~~~~~~vig~~~--~~~~-~~~~G~--~~i~~~~i~~~~~~l~~al~~aEL~s~~P~~aGG~Y~w~~~ 78 (496)
T PRK15238 4 NTKKKLSLIGLILMIFTSVFGFAN--SPRA-FYLMGY--SAIPWYILSAILFFIPFALMMAEYGSAFKDEKGGIYSWMNK 78 (496)
T ss_pred cccCeeeHHHHHHHHHHHHHhCCc--hHHH-HHHcCh--HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHH
Confidence 357899999999999999988542 2322 333343 244445556655 57899999999999997 8999999999
Q ss_pred HhCchhHHHHHHHHHHHHHhhHHHHHHHH----HHHHhhhhc-CCCC---C-CchHHHHHHHHHHHHHHHHHHhhhhhHH
Q psy9204 165 AFGELPAFLRLWVALLIMRPTTQAIVALT----FAQYAIKPF-FPDS---E-LPDRAVLLLAAACLCVLTAVNCMSVSWA 235 (265)
Q Consensus 165 ~~g~~~gf~~gw~~~l~~~~~~~a~~~~~----~~~~l~~~~-~~~~---~-~~~~~~~~i~~~~l~~~~~in~~gvk~~ 235 (265)
.+||+.||+.+|.++. .+.......+.. ....+.... .+.. + .+......++++.+++++++|++|+|..
T Consensus 79 ~~G~~~gf~~~w~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~t~vn~~g~~~~ 157 (496)
T PRK15238 79 SVGPKFAFIGTFMWFA-SYIIWMVSTASKIWIPFSTFIFGKDTTQTWHFLGLNSTQVVGILAVIWMILVTFVASKGINKI 157 (496)
T ss_pred HcCchHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHcCcchhhhhhhhcccchHHHHHHHHHHHHHHHHHHccchHHH
Confidence 9999999999998776 433332222111 111111100 0000 0 1111223455566668999999999999
Q ss_pred HHHHHHHHHHHHHHHH
Q psy9204 236 MQVQTLFTVGKLVALF 251 (265)
Q Consensus 236 ~~i~~v~~~~~i~~~~ 251 (265)
.|+|++.+.+++...+
T Consensus 158 ~~i~~~~~~~~~~~~~ 173 (496)
T PRK15238 158 AKVTSIGGIAVMLLNI 173 (496)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999998888876544
No 34
>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter. Members of this protein family are putative putative glutamate/gamma-aminobutyrate antiporters. Each member of the seed alignment is found adjacent to a glutamate decarboxylase, which converts glutamate (Glu) to gamma-aminobutyrate (GABA). However, the majority belong to genome contexts with a glutaminase (converts Gln to Glu) as well as the decarboxylase that converts Glu to GABA. The specificity of the transporter remains uncertain.
Probab=99.64 E-value=7.8e-15 Score=138.34 Aligned_cols=165 Identities=17% Similarity=0.116 Sum_probs=114.5
Q ss_pred cccchhhhHHhhhccccceeeecchHHHHHhcccchHHHHHHHHHHHHH-HHHHHHHHHhccccccCCchHHhHHHHhCc
Q psy9204 90 QRLVRLEGVSIIVGCIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLS-TIGALCYAELGTCISRSGGDYAYILVAFGE 168 (265)
Q Consensus 90 r~l~~~~~~~l~i~~vig~gi~~~~~~~~~~~g~~~~~i~~~~i~~l~~-~~~a~~~aEl~s~~P~~GG~y~~~~~~~g~ 168 (265)
||++.+++..+.+..+.+.. ..+.. ...| ...++.|++++++. ++.+++++||++++|++||.|.|++|.+||
T Consensus 1 ~~~~~~~l~~~~~~~v~~~~--~~~~~--a~~G--~~~~~~~~i~~~~~~ip~al~~aEL~~~~P~~GG~y~~~~~a~G~ 74 (474)
T TIGR03813 1 KKLTVVTLAIMNITAVVSLR--GLPAE--AEYG--LSAAFYYLFAAIFFLVPVSLVAAELATAWPEKGGVFRWVGEAFGA 74 (474)
T ss_pred CcccHHHHHHHHHHHHHHhh--cchHH--HHhh--HHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCceeeHhhhcCh
Confidence 46889999988877764322 22222 2333 24556688888876 479999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHhhHHHHHHHHHH---HHhhhh--cCCCCCCchHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Q psy9204 169 LPAFLRLWVALLIMRPTTQAIVALTFA---QYAIKP--FFPDSELPDRAVLLLAAACLCVLTAVNCMSVSWAMQVQTLFT 243 (265)
Q Consensus 169 ~~gf~~gw~~~l~~~~~~~a~~~~~~~---~~l~~~--~~~~~~~~~~~~~~i~~~~l~~~~~in~~gvk~~~~i~~v~~ 243 (265)
++||+.+|.+|+ .+....+......+ .+.... ..+..+.+.+....+.++++++.+.+|++|+|..+|++++..
T Consensus 75 ~~gf~~gw~~w~-~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~in~~gv~~~~~i~~~~~ 153 (474)
T TIGR03813 75 RWGFLAIFMLWA-QVTIWFPTVLTFGAVSLAFIGPEATVDESLAGNKLYVLVSVLFVYWLATFIALRGVAAFTKVAKWGG 153 (474)
T ss_pred hHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCccccCcccccccHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 999999999998 44333322211111 122111 112222344555566777778889999999999999999875
Q ss_pred HH-HHHHHHHHHHHHHHHh
Q psy9204 244 VG-KLVALFGIIAAGIGYL 261 (265)
Q Consensus 244 ~~-~i~~~~~~ii~g~~~~ 261 (265)
.+ ++++++++++.++...
T Consensus 154 ~~~~ii~~~~~ii~~~~~~ 172 (474)
T TIGR03813 154 IVGTIIPAAILVILGISYL 172 (474)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 54 5677777777776654
No 35
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter. Lowered cutoffs from 1000/500 to 800/300, promoted from subfamily to equivalog, and put into a Genome Property DHH 9/1/2009
Probab=99.59 E-value=5.2e-14 Score=133.81 Aligned_cols=165 Identities=18% Similarity=0.263 Sum_probs=114.0
Q ss_pred cccccchhhhHHhhhccccceeeecchHHHHHhcccchHHHHH-HHHHHHH-HHHHHHHHHHhccccc-cCCchHHhHHH
Q psy9204 88 TGQRLVRLEGVSIIVGCIIGSGIFVSPAGVLAETQSVGLSIVI-WTVCGLL-STIGALCYAELGTCIS-RSGGDYAYILV 164 (265)
Q Consensus 88 l~r~l~~~~~~~l~i~~vig~gi~~~~~~~~~~~g~~~~~i~~-~~i~~l~-~~~~a~~~aEl~s~~P-~~GG~y~~~~~ 164 (265)
.+||++.++.+.+.++.+.+ ++..|. ....| ...+. |++++++ .++.+++++||++++| ++||.|.|+++
T Consensus 2 ~~~~l~~~~~~~~~~~~v~~--~~~~~~--~a~~G---~~~i~~~i~~~l~~~lp~al~~AELas~~p~~~GG~y~wv~~ 74 (507)
T TIGR00910 2 KAKKLSLFGFFAITASMVLA--VYEYPT--FATSG---FHLVFFLLLGGILWFIPVALCAAEMATVDGWEEGGIFAWVSN 74 (507)
T ss_pred CCcEeeHHHHHHHHHHHHHH--HHhhHH--HHHhh---HHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCeeeehhh
Confidence 36789999999999887643 233332 12223 34344 5666655 5779999999999997 89999999999
Q ss_pred HhCchhHHHHHHHHHHHHHhhHHHHH---HHHHHHHhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Q psy9204 165 AFGELPAFLRLWVALLIMRPTTQAIV---ALTFAQYAIKPFFPDSELPDRAVLLLAAACLCVLTAVNCMSVSWAMQVQTL 241 (265)
Q Consensus 165 ~~g~~~gf~~gw~~~l~~~~~~~a~~---~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~l~~~~~in~~gvk~~~~i~~v 241 (265)
.+||++||+.+|.+|+ ......+.. ......|+.. .+..+.+.+...++.++++++++++|++|+|..++++++
T Consensus 75 a~G~~~Gf~~~~~~W~-~~~~~~~~~~~~~~~~~~y~~~--~~~~~~~~~~~~i~~l~i~~~~t~~n~~G~k~~~~i~~i 151 (507)
T TIGR00910 75 TLGERFGFAAIFFGWF-QIAIGFIPMIYFILGALSYILK--FPALNEDPIIKFIAALIIFWALAFSQFGGTKRTAKIAKA 151 (507)
T ss_pred ccCccHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhc--CchhccCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 9999999999999998 333222221 2222344331 234444456667777778899999999999999999998
Q ss_pred HHHHHH-HHHHHHHHHHHHHhh
Q psy9204 242 FTVGKL-VALFGIIAAGIGYLG 262 (265)
Q Consensus 242 ~~~~~i-~~~~~~ii~g~~~~~ 262 (265)
..++.+ ++++++++.++....
T Consensus 152 ~~~~~~~i~~~ili~l~~~~~~ 173 (507)
T TIGR00910 152 GFFAGILIPAFILFALAAAYFH 173 (507)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 766554 445555555555443
No 36
>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [], [], []. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. This domain is found in a wide variety of permeases, as well as several hypothetical proteins. ; GO: 0006810 transport, 0055085 transmembrane transport, 0016020 membrane
Probab=99.53 E-value=6.5e-15 Score=138.96 Aligned_cols=156 Identities=25% Similarity=0.394 Sum_probs=129.1
Q ss_pred HHhhhccccceeeecchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhccccccCCchHHhHHHHhCchhHHHHHHH
Q psy9204 98 VSIIVGCIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTIGALCYAELGTCISRSGGDYAYILVAFGELPAFLRLWV 177 (265)
Q Consensus 98 ~~l~i~~vig~gi~~~~~~~~~~~g~~~~~i~~~~i~~l~~~~~a~~~aEl~s~~P~~GG~y~~~~~~~g~~~gf~~gw~ 177 (265)
.+++++.++|.|.+...+.....+|+.+ .++++++++++.++.+.+++|+++++|++||.|.|++|.+||..|+..||.
T Consensus 3 ~~~~ig~~ig~g~f~~~g~~~~~~G~~~-~~la~li~~i~~~~~~~~~~ems~~~p~~Gg~y~y~~~~lg~~~Gf~~gw~ 81 (478)
T PF00324_consen 3 FMISIGGIIGTGLFLGSGFAIAAAGPGG-APLAYLIAGIIVLLVALSLAEMSRRFPSAGGFYAYASRGLGPALGFAAGWA 81 (478)
T ss_pred EEeeHHHHHHHHHHHHHHHHHHhccccc-chhHhHHHHHHHHhhhhhhhhhhhhhccccchhhhhhhccCCcCCceeeHH
Confidence 4567888889999999888888776533 467789999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhHHHHHHHHHHHHhhhhc--CCCCCCchHHH-HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Q psy9204 178 ALLIMRPTTQAIVALTFAQYAIKPF--FPDSELPDRAV-LLLAAACLCVLTAVNCMSVSWAMQVQTLFTVGKLVALFGII 254 (265)
Q Consensus 178 ~~l~~~~~~~a~~~~~~~~~l~~~~--~~~~~~~~~~~-~~i~~~~l~~~~~in~~gvk~~~~i~~v~~~~~i~~~~~~i 254 (265)
+++ .+....+......+.++.. . .++.+. .+.. .+++.+++++++.+|++|+|..+|++.++..+|++.++.++
T Consensus 82 y~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~i~~~~~~~l~~~gv~~~~~~~~~~~~i~~~~li~~i 158 (478)
T PF00324_consen 82 YWL-SYIAAIAAEATAAGSFLQF-WGYFPGLPS-TWVWGILIAIIFILLITLLNLFGVRVSGKIEFILTIIKLIALIAFI 158 (478)
T ss_pred HHH-HHHHHHHhhhhhhhhhhcc-ccccccccc-cccccchhhhhhhhhhhhhhhhhhhccchHHHHHHHHhhhHhhhhh
Confidence 999 7777777777777666553 3 233221 1111 14577788889999999999999999999999999999999
Q ss_pred HHH
Q psy9204 255 AAG 257 (265)
Q Consensus 255 i~g 257 (265)
+.+
T Consensus 159 i~~ 161 (478)
T PF00324_consen 159 IVG 161 (478)
T ss_pred hhc
Confidence 888
No 37
>TIGR00837 araaP aromatic amino acid transport protein. aromatic amino acid transporters and includes the tyrosine permease, TyrP, of E. coli, and the tryptophan transporters TnaB and Mtr of E. coli.
Probab=99.51 E-value=1.6e-13 Score=125.82 Aligned_cols=160 Identities=11% Similarity=0.054 Sum_probs=121.3
Q ss_pred HHhhhccccceeeecchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhccccccCCchHHhHHHHhCchhHHHHHHH
Q psy9204 98 VSIIVGCIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTIGALCYAELGTCISRSGGDYAYILVAFGELPAFLRLWV 177 (265)
Q Consensus 98 ~~l~i~~vig~gi~~~~~~~~~~~g~~~~~i~~~~i~~l~~~~~a~~~aEl~s~~P~~GG~y~~~~~~~g~~~gf~~gw~ 177 (265)
..+.+++++|+|++.+|...... |.. ..++..+++++++.+.+++++|+++++|+++|.|.|.++.+||+.+++.+|.
T Consensus 3 ~~lv~gt~IGaGIl~lP~~~a~~-g~~-~~~~~~i~~~~~~~~~~l~~~el~~~~p~~~~~~~~~~~~~G~~~g~~~~~~ 80 (381)
T TIGR00837 3 ALIIAGTTIGAGMLALPTSTAGA-WFI-WTLLLLILLWFLMLHSGLLLLEVYLTYPGGASFNTIAKDLLGKTGNIIAGLS 80 (381)
T ss_pred eEEeehhhHhHHHHHHHHHHHhh-hHH-HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHhCHHHHHHHHHH
Confidence 45677889999999999886654 322 3334457788899999999999999999999999999999999999999999
Q ss_pred HHHHHHhhHHHHHHHHHHHHhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9204 178 ALLIMRPTTQAIVALTFAQYAIKPFFPDSELPDRAVLLLAAACLCVLTAVNCMSVSWAMQVQTLFTVGKLVALFGIIAAG 257 (265)
Q Consensus 178 ~~l~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~l~~~~~in~~gvk~~~~i~~v~~~~~i~~~~~~ii~g 257 (265)
+++ .............++++... ++....+.+...+..+++.+++..+|++|+|..+|+|.+.+..+++.++++++.+
T Consensus 81 ~~~-~~~~~~~ay~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~v~~~l~~~G~~~~~~v~~i~~~~~l~~l~~~ii~~ 158 (381)
T TIGR00837 81 LLF-VLYILTYAYISGGGSILSRL-IGEYFGFPWSARAIVLIFTVLFGSFVWLSTSAVDRITRVLIFGKIIAFALVFSGL 158 (381)
T ss_pred HHH-HHHHHHHHHHHccHHHHHHH-HHHhcCCCccHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 988 34344444444444554432 2211111122345667777888899999999999999999999999999888887
Q ss_pred HHHh
Q psy9204 258 IGYL 261 (265)
Q Consensus 258 ~~~~ 261 (265)
+.+.
T Consensus 159 ~~~~ 162 (381)
T TIGR00837 159 LPHV 162 (381)
T ss_pred Hhhc
Confidence 7654
No 38
>TIGR00912 2A0309 spore germination protein (amino acid permease). This model describes spore germination protein GerKB and paralogs from Bacillus subtilis, Clostridium tetani, and other known or predicted endospore-forming members of the Firmicutes (low-GC Gram positive bacteria). Members show some similarity to amino acid permeases.
Probab=99.49 E-value=8.2e-13 Score=120.20 Aligned_cols=152 Identities=13% Similarity=0.161 Sum_probs=130.1
Q ss_pred cccchhhhHHhhhccccceeeecchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhccccccCCchHHhHHHHhCch
Q psy9204 90 QRLVRLEGVSIIVGCIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTIGALCYAELGTCISRSGGDYAYILVAFGEL 169 (265)
Q Consensus 90 r~l~~~~~~~l~i~~vig~gi~~~~~~~~~~~g~~~~~i~~~~i~~l~~~~~a~~~aEl~s~~P~~GG~y~~~~~~~g~~ 169 (265)
++++.++...+.++.++|+|++..|+.....++.. ++++++++++..++.+.+++|+++++|+. +.+.|.++.+||+
T Consensus 1 ~~is~~q~~~l~~~~~iG~gil~~P~~~~~~a~~~--~wi~~ll~~~~~~~~~~~~~~l~~~~p~~-~~~~~~~~~~Gk~ 77 (359)
T TIGR00912 1 DKISSKQLIFLISSTMIGSGLLTLPALVSQSAGQD--GWISIILGGLIIIFLLCLMIKIMSKFPEK-NFSEILSKYLGKI 77 (359)
T ss_pred CcCcHHHHHHHHHHHHHHHHHHhhhHHHHhccCCC--eeHHHHHHHHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHhhHH
Confidence 36889999999999999999999999988876642 45677999999999999999999999987 5999999999999
Q ss_pred hHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Q psy9204 170 PAFLRLWVALLIMRPTTQAIVALTFAQYAIKPFFPDSELPDRAVLLLAAACLCVLTAVNCMSVSWAMQVQTLFTVGKLVA 249 (265)
Q Consensus 170 ~gf~~gw~~~l~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~l~~~~~in~~gvk~~~~i~~v~~~~~i~~ 249 (265)
.|++.+|.+++ +.....+.....+++++.....|+. | .+.+...+++++..++..|+|..+|++.+...+++..
T Consensus 78 ~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~t--p---~~~~~l~~l~~~~~~~~~Gi~~i~r~~~i~~~~~i~~ 151 (359)
T TIGR00912 78 LGRLLSILFIL-YFFLIAAYLIRIFADFIKTYLLPRT--P---IIVIIILIIIVSIYIVRKGIEVLLRTAEILLIIFLIL 151 (359)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhcCCC--C---HHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHH
Confidence 99999999888 7777777888888888876555543 2 4566777788889999999999999999999998877
Q ss_pred H
Q psy9204 250 L 250 (265)
Q Consensus 250 ~ 250 (265)
.
T Consensus 152 ~ 152 (359)
T TIGR00912 152 F 152 (359)
T ss_pred H
Confidence 3
No 39
>PHA02764 hypothetical protein; Provisional
Probab=99.33 E-value=2.3e-11 Score=105.95 Aligned_cols=95 Identities=19% Similarity=0.037 Sum_probs=75.2
Q ss_pred ccccccccchhhhHHhhhccccceeeecchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhccccccCCchHHhHHH
Q psy9204 85 LPVTGQRLVRLEGVSIIVGCIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTIGALCYAELGTCISRSGGDYAYILV 164 (265)
Q Consensus 85 ~~~l~r~l~~~~~~~l~i~~vig~gi~~~~~~~~~~~g~~~~~i~~~~i~~l~~~~~a~~~aEl~s~~P~~GG~y~~~~~ 164 (265)
...+-|+.+.++++...++.+........+ .......+....+.+|+++++++++.++||+|+++++|++||.|.|.+|
T Consensus 7 SSGLVREvs~lDAF~~Nl~~m~~Gi~Is~~-~l~a~l~pG~nlLLAWLLGGLlALPgAL~YAELGSAmPrAGGdYVYISR 85 (399)
T PHA02764 7 SSGIIKSFNILDIFSINLLYMGILSGISYP-LFVSSLLKNVNLLFAILIGAVFEIPLLLMYYKLTTKFPLNGGDYAYIRT 85 (399)
T ss_pred cCCceeeccHHHHHHHHHHhhccchhHHHH-HHHhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCceEEEhHH
Confidence 357899999999999888775322111111 1122223334566789999999999999999999999999999999999
Q ss_pred HhCchhHHHHHHHHHH
Q psy9204 165 AFGELPAFLRLWVALL 180 (265)
Q Consensus 165 ~~g~~~gf~~gw~~~l 180 (265)
++||..|++.||..|+
T Consensus 86 AFGP~~GFLvG~a~WL 101 (399)
T PHA02764 86 AFSSKFYTIFGISLWL 101 (399)
T ss_pred hhCccHHHHHHHHHHH
Confidence 9999999999999998
No 40
>KOG1287|consensus
Probab=99.20 E-value=3.5e-10 Score=104.84 Aligned_cols=54 Identities=46% Similarity=1.053 Sum_probs=47.9
Q ss_pred eecCCCCCCCCC-cCCC-CChhHHHHHHHhhhhccCCcccchhhhccccCCCCCCcc
Q psy9204 32 LYSEGSSNFDHA-WDGN-YDITKISLALYSGLFAFGGWNYLNFVVDELQDPYNLVLP 86 (265)
Q Consensus 32 ~~~~~~~~f~~~-f~~~-~~~~~~~~a~~~~~~~y~Gw~~~n~v~~e~k~p~~~~~~ 86 (265)
+.+++++|+++. |+++ ++.+.+.+|+|+++|+|+|||++|+++||+|||+| +.|
T Consensus 183 ~~~g~~~~~~~~~f~g~~~~~g~i~lafysglfa~~GWd~lN~vteEiknP~k-tLP 238 (479)
T KOG1287|consen 183 LFWGSTQNFENSEFEGSDTDVGNIALAFYSGLFAFSGWDYLNYVTEEIKNPRR-TLP 238 (479)
T ss_pred eEecccccccccccccCcCchHHHHHHHHHhhhcccCchhhccchHhhcCccc-cch
Confidence 446888998877 8884 88999999999999999999999999999999999 444
No 41
>TIGR00796 livcs branched-chain amino acid uptake carrier. transmembrane helical spanners.
Probab=98.99 E-value=2.4e-08 Score=91.42 Aligned_cols=150 Identities=15% Similarity=0.222 Sum_probs=118.6
Q ss_pred hccccceeeecchHHHHHhcccc-hHHHHHHHHHHHHHHHHHHHHHHhccccccCCchHHhHHHHhCchhHHHHHHHHHH
Q psy9204 102 VGCIIGSGIFVSPAGVLAETQSV-GLSIVIWTVCGLLSTIGALCYAELGTCISRSGGDYAYILVAFGELPAFLRLWVALL 180 (265)
Q Consensus 102 i~~vig~gi~~~~~~~~~~~g~~-~~~i~~~~i~~l~~~~~a~~~aEl~s~~P~~GG~y~~~~~~~g~~~gf~~gw~~~l 180 (265)
++.-.|+|.+..|..+...+|+. ..+.++|++.++...+.+++ +.|++||.|++..+++||+.|++.+|..++
T Consensus 5 FamffGAGNlIfPp~lG~~aG~~~~~a~lgf~ltgV~lpllgl~------av~~~gG~~~~l~~~~g~~f~~lf~~~~~l 78 (378)
T TIGR00796 5 FALFFGAGNIIFPPMLGLAAGEHVWTAALGFLLTGVGLPLLGLI------ALALVGGGYDSLSARIGKVFGILFTVILYL 78 (378)
T ss_pred HHHHHhhhHHhhhHHHHHHhCccHHHHHHHHHHHHHHHHHHHHh------eeeecCCCHHHHHHHhChHHHHHHHHHHHH
Confidence 34456788899999999998875 67778899999988888877 888999999999999999999999999887
Q ss_pred HHHhhH----HHHHHHHHHHHhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy9204 181 IMRPTT----QAIVALTFAQYAIKPFFPDSELPDRAVLLLAAACLCVLTAVNCMSVSWAMQVQTLFTVGKLVALFGIIAA 256 (265)
Q Consensus 181 ~~~~~~----~a~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~l~~~~~in~~gvk~~~~i~~v~~~~~i~~~~~~ii~ 256 (265)
+..+.. ++..++.++ +. .++|... +.....+..+++..+..++|+++.|...+++++++..+++.++.+++.
T Consensus 79 ~iGP~~aiPRtaa~s~e~~--i~-p~~~~~~-~~~~l~i~siiff~i~~~l~~~~~k~~~~iGk~LTP~lLi~l~~lii~ 154 (378)
T TIGR00796 79 TIGPLFAIPRTATVSFEMG--IA-PLLHSPT-SLLALFIFSLIFFAVVLLLSLNPSKLIDRVGKFLTPALLVTLLALIIK 154 (378)
T ss_pred HHHhchhhhHHHHHHHHHH--HH-hccCccc-chHHHHHHHHHHHHHHHHHHcCcccHHHHhHHHHHHHHHHHHHHHHHH
Confidence 544554 555555544 33 3444311 223345566777777788999999999999999999999999999999
Q ss_pred HHHHh
Q psy9204 257 GIGYL 261 (265)
Q Consensus 257 g~~~~ 261 (265)
|+...
T Consensus 155 g~~~p 159 (378)
T TIGR00796 155 ALLWP 159 (378)
T ss_pred HHHcC
Confidence 99764
No 42
>PF03845 Spore_permease: Spore germination protein; InterPro: IPR004761 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. Spore germination protein (amino acid permease) is involved in the response to the germinative mixture of L-asparagine, glucose, fructose and potassium ions (AFFK). These proteins could be amino acid transporters.; GO: 0009847 spore germination, 0016021 integral to membrane
Probab=98.90 E-value=9.4e-08 Score=85.77 Aligned_cols=157 Identities=16% Similarity=0.163 Sum_probs=133.3
Q ss_pred ccchhhhHHhhhccccceeeecchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhccccccCCchHHhHHHHhCchh
Q psy9204 91 RLVRLEGVSIIVGCIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTIGALCYAELGTCISRSGGDYAYILVAFGELP 170 (265)
Q Consensus 91 ~l~~~~~~~l~i~~vig~gi~~~~~~~~~~~g~~~~~i~~~~i~~l~~~~~a~~~aEl~s~~P~~GG~y~~~~~~~g~~~ 170 (265)
|++.+|...+.+...++.+....|......+++ ++++-+++++..+...+.+..+++++|+.. ...+.++.+||+.
T Consensus 1 kIS~~Q~~~l~~~~~~g~~~l~~p~~l~~~~~d---~Wi~~ll~~~~~l~~~~l~~~l~~~~p~~~-l~~~~~~~~Gk~l 76 (320)
T PF03845_consen 1 KISPRQLFFLLISSIIGTGILFLPAILAEQAGD---AWISVLLGGLIGLLLALLIYYLLKRFPGKT-LVEISEKLFGKWL 76 (320)
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC---cHHHHHHHHHHHHHHHHHHHHHHHHCCCCC-HHHHHHHHhCcHH
Confidence 567888999999999999999999998888753 234448889999999999999999999977 8999999999999
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Q psy9204 171 AFLRLWVALLIMRPTTQAIVALTFAQYAIKPFFPDSELPDRAVLLLAAACLCVLTAVNCMSVSWAMQVQTLFTVGKLVAL 250 (265)
Q Consensus 171 gf~~gw~~~l~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~l~~~~~in~~gvk~~~~i~~v~~~~~i~~~ 250 (265)
|.+.+..+.+ ++....+.....+.+.+...++|+.+ .+.+...+++++.+....|.+..+|.+.+...+.++.+
T Consensus 77 g~ii~~~~~l-~~l~~~~~~lr~~~~~i~~~~lp~TP-----~~~i~~~~ll~~~y~a~~G~e~i~R~~~~~~~~~~i~~ 150 (320)
T PF03845_consen 77 GKIINLLYIL-YFLLISALVLREFSEFIKTYLLPETP-----IWVIILLFLLVAAYAARKGIEVIARVAEILFPIFLILL 150 (320)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhcCcCC-----HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHH
Confidence 9999998888 78888899999999999987777643 45777888899999999999999998888888887776
Q ss_pred HHHHHHH
Q psy9204 251 FGIIAAG 257 (265)
Q Consensus 251 ~~~ii~g 257 (265)
+.+.+..
T Consensus 151 ~~i~~~~ 157 (320)
T PF03845_consen 151 LLILLLS 157 (320)
T ss_pred HHHHHHh
Confidence 6665443
No 43
>TIGR00814 stp serine transporter. The HAAAP family includes well characterized aromatic amino acid:H+ symport permeases and hydroxy amino acid permeases. This subfamily is specific for hydroxy amino acid transporters and includes the serine permease, SdaC, of E. coli, and the threonine permease, TdcC, of E. coli.
Probab=98.84 E-value=1.3e-07 Score=87.25 Aligned_cols=157 Identities=11% Similarity=0.056 Sum_probs=106.7
Q ss_pred HHhhhccccceeeecchHHHHHhcccchHHHHHHHHHHHHHHHHHH----HHHHhcccccc-CCchHHhHHHHhCchhHH
Q psy9204 98 VSIIVGCIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTIGAL----CYAELGTCISR-SGGDYAYILVAFGELPAF 172 (265)
Q Consensus 98 ~~l~i~~vig~gi~~~~~~~~~~~g~~~~~i~~~~i~~l~~~~~a~----~~aEl~s~~P~-~GG~y~~~~~~~g~~~gf 172 (265)
....+++++|+|++.+|... +. + .++.++++.++..+..+ .+.|.....|. ..+.+.++++.+||..|.
T Consensus 9 ~~~l~gt~IGaGiL~LP~~a-g~-~----G~i~~li~~l~~~pl~~~~~~ll~~~~l~~~~p~~~i~~~~~~~fGk~~G~ 82 (397)
T TIGR00814 9 MLGLYGTAIGAGVLFLPIQA-GL-G----GLWVLVLMAIIAYPLTYFGHRALARFLLSSKNPCEDITEVVEEHFGKNWGI 82 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHH-Hh-C----HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHcCHHHHH
Confidence 45567788999999999762 21 1 23344555555555444 44555444444 667999999999999999
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Q psy9204 173 LRLWVALLIMRPTTQAIVALTFAQYAIKPFFPDSELPDRAVLLLAAACLCVLTAVNCMSVSWAMQVQTLFTVGKLVALFG 252 (265)
Q Consensus 173 ~~gw~~~l~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~l~~~~~in~~gvk~~~~i~~v~~~~~i~~~~~ 252 (265)
+.++.|++ .........+....+.+.+.+......+.....+.+.+++++...++..|.|...|++.++...+++.+++
T Consensus 83 ii~~lY~~-~~~~i~~aY~~~~~~~~~~fl~~~~~~~~p~~~i~~lilv~il~~iv~~G~~~i~r~~~il~~~~ii~l~~ 161 (397)
T TIGR00814 83 LITLLYFF-AIYPILLIYSVAITNDSASFLVNQLGTAPPLRGLLSLALILILVAIMSFGEKLLFKIMGPLVFPLVLILVL 161 (397)
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999 55555455554444444332211111111123466777777779999999999999999999999998888
Q ss_pred HHHHHHHHh
Q psy9204 253 IIAAGIGYL 261 (265)
Q Consensus 253 ~ii~g~~~~ 261 (265)
+.+..+.+.
T Consensus 162 l~~~lip~~ 170 (397)
T TIGR00814 162 LSLYLIPHW 170 (397)
T ss_pred HHHHHHHHc
Confidence 888777654
No 44
>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. Aromatic amino acids are concentrated in the cytoplasm of Escherichia coli by 4 distinct transport systems: a general aromatic amino acid permease, and a specific permease for each of the 3 types (Phe, Tyr and Trp) []. It has been shown [] that some permeases in E. coli and related bacteria are evolutionary related. These permeases are proteins of about 400 to 420 amino acids and are located in the cytoplasmic membrane and, like bacterial sugar/cation transporters, are thought to contain 12 transmembrane (TM) regions [] - hydropathy analysis, however, is inconclusive, suggesting the possibility of 10 to 12 membrane-spanning domains []. The best conserved domain is a stretch of 20 residues which seems to be located in a cytoplasmic loop between the first and second transmembrane region.
Probab=98.80 E-value=1.8e-07 Score=86.35 Aligned_cols=168 Identities=12% Similarity=0.077 Sum_probs=125.2
Q ss_pred ccchhhhHHhhhccccceeeecchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhccccccCCchHHhHHHHhCchh
Q psy9204 91 RLVRLEGVSIIVGCIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTIGALCYAELGTCISRSGGDYAYILVAFGELP 170 (265)
Q Consensus 91 ~l~~~~~~~l~i~~vig~gi~~~~~~~~~~~g~~~~~i~~~~i~~l~~~~~a~~~aEl~s~~P~~GG~y~~~~~~~g~~~ 170 (265)
+-+.+...++..|+.+|.|+..+|-.... .| ..+..+..+++..++...++.++|...+.|+..+.-..+++.+||..
T Consensus 2 ~~~~~~~~~li~GTaIGAGmLaLP~~~~~-~G-f~~~~~~l~~~w~~~~~s~l~~~E~~~~~~~~~~~~~~a~~~lG~~g 79 (394)
T PF03222_consen 2 NNSILGGVLLIAGTAIGAGMLALPIATAG-AG-FLPSLILLLIAWPLMYYSGLLLAEVSLNTPEGSSLTSMAEKYLGKKG 79 (394)
T ss_pred CchHHHHHHHHHHccHhHHHHHHHHHHHh-Cc-hHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHhChHH
Confidence 44567788999999999999999866433 24 23344445777778888999999999999998889999999999999
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Q psy9204 171 AFLRLWVALLIMRPTTQAIVALTFAQYAIKPFFPDSELPDRAVLLLAAACLCVLTAVNCMSVSWAMQVQTLFTVGKLVAL 250 (265)
Q Consensus 171 gf~~gw~~~l~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~l~~~~~in~~gvk~~~~i~~v~~~~~i~~~ 250 (265)
+++.+..+.+. ......+.....++.+.+.+ +......+.......++.++...+-+.|.|...|++.++...+++.+
T Consensus 80 ~~~~~~~~~~~-~y~ll~AYisg~g~~~~~~l-~~~~~~~~~~~~~~~~f~~i~~~iv~~g~~~v~~~n~~lv~~~i~~~ 157 (394)
T PF03222_consen 80 GIVIGISYLFL-LYALLVAYISGGGSILSSLL-GNQLGTDLSPWLSSLLFTIIFGGIVYFGTKAVDRINRVLVFGMIISF 157 (394)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHccHHHHHHHH-HHhcCCCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 99999988883 33444455555555555432 21111112234556666677777888999999999999999999999
Q ss_pred HHHHHHHHHHhh
Q psy9204 251 FGIIAAGIGYLG 262 (265)
Q Consensus 251 ~~~ii~g~~~~~ 262 (265)
+.+++.++.+..
T Consensus 158 ~~l~~~~~p~~~ 169 (394)
T PF03222_consen 158 IILVVYLIPHWN 169 (394)
T ss_pred HHHHHHHhhhcC
Confidence 999988877653
No 45
>PRK10483 tryptophan permease; Provisional
Probab=98.62 E-value=1.8e-06 Score=79.85 Aligned_cols=169 Identities=14% Similarity=0.074 Sum_probs=124.2
Q ss_pred ccccccchhhhHHhhhccccceeeecchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhccccccCCchHHhHHHHh
Q psy9204 87 VTGQRLVRLEGVSIIVGCIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTIGALCYAELGTCISRSGGDYAYILVAF 166 (265)
Q Consensus 87 ~l~r~l~~~~~~~l~i~~vig~gi~~~~~~~~~~~g~~~~~i~~~~i~~l~~~~~a~~~aEl~s~~P~~GG~y~~~~~~~ 166 (265)
..|++.+......+..|+.+|.|.+.+|...... | ..++.+..++..+++...++.+.|.+.++|+.-+.-..+++.+
T Consensus 6 ~~~~~~~~~g~~~iIaGT~IGaGMLaLP~~~a~~-G-F~~s~~~l~~~W~~M~~taLlllEv~l~~~~g~~~~tma~~~L 83 (414)
T PRK10483 6 TTQTSPSLLGGVVIIGGTIIGAGMFSLPVVMSGA-W-FFWSMAALIFTWFCMLHSGLMILEANLNYRIGSSFDTITKDLL 83 (414)
T ss_pred cccCCCcHHHHHHHHHHchHhHHHHHHHHHHHhc-c-HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHc
Confidence 4567889999999999999999999998654332 4 2344555677888899999999999999998888899999999
Q ss_pred CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhcCC-CCCCchHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Q psy9204 167 GELPAFLRLWVALLIMRPTTQAIVALTFAQYAIKPFFP-DSELPDRAVLLLAAACLCVLTAVNCMSVSWAMQVQTLFTVG 245 (265)
Q Consensus 167 g~~~gf~~gw~~~l~~~~~~~a~~~~~~~~~l~~~~~~-~~~~~~~~~~~i~~~~l~~~~~in~~gvk~~~~i~~v~~~~ 245 (265)
||....+.+..+.+..+ ....++....++.+.+.+.. +.+.| ...-.+++.++...+.+.|.|...|+|.++...
T Consensus 84 G~~g~~i~~~s~lfl~Y-~Ll~AYisg~g~il~~~l~~~~~~i~---~~~~~llF~~~~~~iv~~gt~~vd~~n~~l~~~ 159 (414)
T PRK10483 84 GKGWNVVNGISIAFVLY-ILTYAYISASGSILHHTFAEMSLNVP---ARAAGFGFALLVAFVVWLSTKAVSRMTAIVLGA 159 (414)
T ss_pred ChHHHHHHHHHHHHHHH-HHHHHHHhCcHHHHHHHHHhcCCCCc---HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 99877666655555333 33334444455555543311 12223 346677777888888999999999999999999
Q ss_pred HHHHHHHHHHHHHHHh
Q psy9204 246 KLVALFGIIAAGIGYL 261 (265)
Q Consensus 246 ~i~~~~~~ii~g~~~~ 261 (265)
+++.+++.+...+.++
T Consensus 160 ~i~~f~~~~~~l~~~i 175 (414)
T PRK10483 160 KVITFFLTFGSLLGHV 175 (414)
T ss_pred HHHHHHHHHHHHHhhc
Confidence 9998887776655443
No 46
>PRK09664 tryptophan permease TnaB; Provisional
Probab=98.49 E-value=5.1e-06 Score=76.86 Aligned_cols=163 Identities=12% Similarity=0.058 Sum_probs=117.8
Q ss_pred chhhhHHhhhccccceeeecchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhccccccCCchHHhHHHHhCchhHH
Q psy9204 93 VRLEGVSIIVGCIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTIGALCYAELGTCISRSGGDYAYILVAFGELPAF 172 (265)
Q Consensus 93 ~~~~~~~l~i~~vig~gi~~~~~~~~~~~g~~~~~i~~~~i~~l~~~~~a~~~aEl~s~~P~~GG~y~~~~~~~g~~~gf 172 (265)
+......+..|+.+|.|.+.+|...... | ..++.+..++..+++...++.+.|.+.++|..-+.-..+++.+||..-.
T Consensus 10 ~~~gg~~iIaGT~IGAGMLaLP~~~a~~-G-f~~s~~ll~~~w~~M~~t~LlllEv~l~~~~g~~l~tma~~~LG~~g~~ 87 (415)
T PRK09664 10 SAFWGVMVIAGTVIGGGMFALPVDLAGA-W-FFWGAFILIIAWFSMLHSGLLLLEANLNYPVGSSFNTITKDLIGNTWNI 87 (415)
T ss_pred chhhhhHHhhhccHhHHHHHHHHHHhcc-c-HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHcChHHHH
Confidence 5666788999999999999998554332 4 2344455677888899999999999999998888999999999998666
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHhhhhcCC--CCCCchHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Q psy9204 173 LRLWVALLIMRPTTQAIVALTFAQYAIKPFFP--DSELPDRAVLLLAAACLCVLTAVNCMSVSWAMQVQTLFTVGKLVAL 250 (265)
Q Consensus 173 ~~gw~~~l~~~~~~~a~~~~~~~~~l~~~~~~--~~~~~~~~~~~i~~~~l~~~~~in~~gvk~~~~i~~v~~~~~i~~~ 250 (265)
+.+..+.+..+ ....++....++.+.+.+.. +.+.+ ....++++.++...+-+.|.|...|+|.++...+++.+
T Consensus 88 i~~~~~~fl~Y-~Ll~AYisggG~il~~~l~~~~~~~i~---~~~~~llF~~~~~~~v~~gt~~vd~~nr~l~~~~ii~f 163 (415)
T PRK09664 88 ISGITVAFVLY-ILTYAYISANGAIISETISMNLGYHAN---PRIVGICTAIFVASVLWISSLAASRITSLFLGLKIISF 163 (415)
T ss_pred HHHHHHHHHHH-HHHHHHHhccHHHHHHHHhhhccCCCc---HHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHH
Confidence 66665555233 33334444444555543311 12222 23456778888889999999999999999999999998
Q ss_pred HHHHHHHHHHh
Q psy9204 251 FGIIAAGIGYL 261 (265)
Q Consensus 251 ~~~ii~g~~~~ 261 (265)
++.+...+.++
T Consensus 164 ~~~~~~l~~~i 174 (415)
T PRK09664 164 VIVFGSFFFQV 174 (415)
T ss_pred HHHHHHHhhcc
Confidence 87777665443
No 47
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism]
Probab=98.43 E-value=1.2e-05 Score=74.86 Aligned_cols=170 Identities=14% Similarity=0.091 Sum_probs=129.5
Q ss_pred cccccchhhhHHhhhccccceeeecchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhccccccCC-chHHhHHHHh
Q psy9204 88 TGQRLVRLEGVSIIVGCIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTIGALCYAELGTCISRSG-GDYAYILVAF 166 (265)
Q Consensus 88 l~r~l~~~~~~~l~i~~vig~gi~~~~~~~~~~~g~~~~~i~~~~i~~l~~~~~a~~~aEl~s~~P~~G-G~y~~~~~~~ 166 (265)
.+++-+....+....++.+|+|+...|-. ....| ..+.+...++++.++.+...++.|...+.|+.. +...-+++.+
T Consensus 5 ~~~~~s~~~~vl~l~gT~IGAGvL~lP~a-~~~~G-~~~~l~~l~i~~~~t~~s~~~l~~~~~~~~~~~~~~~~~~~~~~ 82 (415)
T COG0814 5 MKKTSSDLGGVLILAGTAIGAGVLFLPVA-FGGGG-FWPGLLLLIIAWPLTYLSLLLLLEALLSSPNGKASITSLVEDYL 82 (415)
T ss_pred ccCCcchHHHHHHHHccccccchhhhhHH-hcCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHh
Confidence 45566667788889999999999999854 33323 334445567888899999999999999999984 8999999999
Q ss_pred CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Q psy9204 167 GELPAFLRLWVALLIMRPTTQAIVALTFAQYAIKPFFPDSELPDRAVLLLAAACLCVLTAVNCMSVSWAMQVQTLFTVGK 246 (265)
Q Consensus 167 g~~~gf~~gw~~~l~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~l~~~~~in~~gvk~~~~i~~v~~~~~ 246 (265)
||.++++.+..+.+ .......+.....++.+.+.+......+.+...+..+++..+...+.+.|.+..-|.+..+...+
T Consensus 83 G~~~~~li~~s~~~-~~~~~~~aY~~~~g~~l~~~~~~~~~~~~~~r~~~~lif~~~~~~l~~~~~~~~lk~ts~l~~~~ 161 (415)
T COG0814 83 GKKGGILIGLSYFF-ALYGLLVAYIVGIGNLLASFLGNQFGLNPLPRKLGSLIFALVLAFLSWLGTLAVLKITSLLVFGK 161 (415)
T ss_pred CcchHHHHHHHHHH-HHHHHHHHHHhcchhHHHHHHHhhcccCCcchHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHH
Confidence 99999999999888 55555666666666666643321111111345667777777777899999999999999999999
Q ss_pred HHHHHHHHHHHHHH
Q psy9204 247 LVALFGIIAAGIGY 260 (265)
Q Consensus 247 i~~~~~~ii~g~~~ 260 (265)
++.++++.+.-+.+
T Consensus 162 v~~~~~l~~~~~~~ 175 (415)
T COG0814 162 VIYLVLLVVYLIPH 175 (415)
T ss_pred HHHHHHHHHHHhcc
Confidence 99998888776654
No 48
>PRK15132 tyrosine transporter TyrP; Provisional
Probab=98.42 E-value=8.6e-06 Score=75.36 Aligned_cols=162 Identities=14% Similarity=0.140 Sum_probs=113.8
Q ss_pred chhhhHHhhhccccceeeecchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhccccccCCchHHhHHHHhCchhHH
Q psy9204 93 VRLEGVSIIVGCIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTIGALCYAELGTCISRSGGDYAYILVAFGELPAF 172 (265)
Q Consensus 93 ~~~~~~~l~i~~vig~gi~~~~~~~~~~~g~~~~~i~~~~i~~l~~~~~a~~~aEl~s~~P~~GG~y~~~~~~~g~~~gf 172 (265)
+.....++..|+.+|.|...+|-.... .| ..++++..+++..++...++.++|.+.+.|...+.-..+++.+||..++
T Consensus 4 ~~~g~~~li~GTaIGAGmLaLPi~~~~-~G-f~~~~~~li~~w~~m~~t~l~l~Ev~~~~~~~~~~~~~a~~~LG~~g~~ 81 (403)
T PRK15132 4 RTLGSIFIVAGTTIGAGMLAMPLAAAG-VG-FSVTLILLIGLWALMCYTALLLLEVYQHVPADTGLGTLAKRYLGRYGQW 81 (403)
T ss_pred cHHHHHHHHHhcchhHHHHHHHHHHHh-Ch-HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHhChHHHH
Confidence 455678889999999999999866443 24 2334444466666688888889999899888778899999999999999
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHhhhhc---CCCCCCchHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Q psy9204 173 LRLWVALLIMRPTTQAIVALTFAQYAIKPF---FPDSELPDRAVLLLAAACLCVLTAVNCMSVSWAMQVQTLFTVGKLVA 249 (265)
Q Consensus 173 ~~gw~~~l~~~~~~~a~~~~~~~~~l~~~~---~~~~~~~~~~~~~i~~~~l~~~~~in~~gvk~~~~i~~v~~~~~i~~ 249 (265)
+....+.+..+ ....++....++.+.+.+ .+ .+.+. ....+.+.++...+-+.|.|...|++.++...+++.
T Consensus 82 i~~~~y~fl~y-~ll~AYisg~g~il~~~l~~~~~-~~i~~---~~~~l~F~~~~~~iv~~g~~~v~~~n~~L~~~~ii~ 156 (403)
T PRK15132 82 LTGFSMMFLMY-ALTAAYISGAGELLASSISDWTG-ISMSP---TAGVLLFTLVAGGVVCVGTSSVDLFNRFLFSAKIIF 156 (403)
T ss_pred HHHHHHHHHHH-HHHHHHHhCcHHHHHHHHHHhcc-CCCCh---HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH
Confidence 99999888333 344444444334433322 21 12222 234444555556688889999999999999999988
Q ss_pred HHHHHHHHHHHh
Q psy9204 250 LFGIIAAGIGYL 261 (265)
Q Consensus 250 ~~~~ii~g~~~~ 261 (265)
++.+++..+.+.
T Consensus 157 ~~~~~~~l~p~~ 168 (403)
T PRK15132 157 LVVMLALMMPHI 168 (403)
T ss_pred HHHHHHHHHHhc
Confidence 877766655543
No 49
>PRK13629 threonine/serine transporter TdcC; Provisional
Probab=98.42 E-value=1.8e-05 Score=73.50 Aligned_cols=161 Identities=14% Similarity=0.088 Sum_probs=116.5
Q ss_pred HHhhhccccceeeecchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhcccc-ccCCchHHhHHHHhCchhHHHHHH
Q psy9204 98 VSIIVGCIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTIGALCYAELGTCI-SRSGGDYAYILVAFGELPAFLRLW 176 (265)
Q Consensus 98 ~~l~i~~vig~gi~~~~~~~~~~~g~~~~~i~~~~i~~l~~~~~a~~~aEl~s~~-P~~GG~y~~~~~~~g~~~gf~~gw 176 (265)
.....|+.+|+|+..+|-.... .| ..+.++..+++..++......+.|..... |+..+.-..+++.+||..+.+.+.
T Consensus 25 ~l~l~GTAIGAGmLfLPI~~g~-~G-f~p~lillll~~p~m~~s~l~L~e~~L~~~~~~~~i~~v~~~~lG~~g~~i~~i 102 (443)
T PRK13629 25 TLGLFGTAIGAGVLFFPIRAGF-GG-LIPILLMLVLAYPIAFYCHRALARLCLSGSNPSGNITETVEEHFGKTGGVVITF 102 (443)
T ss_pred HHHHHHHHHhHHHHHHHHHHhc-ch-HHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCHHHHHHHHcChhHHHHHHH
Confidence 3556788999999999865332 23 33444445777778888889999999988 555667788889999999999999
Q ss_pred HHHHHHHhhHHHHHHHHHHHHhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy9204 177 VALLIMRPTTQAIVALTFAQYAIKPFFPDSELPDRAVLLLAAACLCVLTAVNCMSVSWAMQVQTLFTVGKLVALFGIIAA 256 (265)
Q Consensus 177 ~~~l~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~l~~~~~in~~gvk~~~~i~~v~~~~~i~~~~~~ii~ 256 (265)
.|.+..++... +......+.+.+.+....+.+.....+.+++++.+...+-..|.|...|++.++...+++.++++.+.
T Consensus 103 lYff~ly~ll~-aY~~~itn~l~sfl~~ql~~~~~~r~l~slifv~~l~~iv~~G~~~v~kv~~~Lv~~~i~~l~~l~~~ 181 (443)
T PRK13629 103 LYFFAICPLLW-IYGVTITNTFMTFWENQLGFAPLNRGFVALFLLLLMAFVIWFGKDLMVKVMSYLVWPFIASLVLISLS 181 (443)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHhhcCcCCccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99884333333 33344444444321111111111356788889999999999999999999999999999999998887
Q ss_pred HHHHh
Q psy9204 257 GIGYL 261 (265)
Q Consensus 257 g~~~~ 261 (265)
.+.+.
T Consensus 182 LiP~w 186 (443)
T PRK13629 182 LIPYW 186 (443)
T ss_pred HHHHc
Confidence 77665
No 50
>KOG2083|consensus
Probab=98.04 E-value=1.9e-05 Score=74.69 Aligned_cols=165 Identities=18% Similarity=0.219 Sum_probs=123.1
Q ss_pred ccccchhhhHHhhh-ccccceeeecchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhccccc-cCCchHHhHHHHh
Q psy9204 89 GQRLVRLEGVSIIV-GCIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTIGALCYAELGTCIS-RSGGDYAYILVAF 166 (265)
Q Consensus 89 ~r~l~~~~~~~l~i-~~vig~gi~~~~~~~~~~~g~~~~~i~~~~i~~l~~~~~a~~~aEl~s~~P-~~GG~y~~~~~~~ 166 (265)
+-++++++-+.... -.+.|...|.-.+-+.+.+| .+..++...++.++.++.+++...++++-. +.||.|..++|.+
T Consensus 27 ~v~fg~~~gv~~~cmlni~gv~lflrl~wivgqag-i~~~~~ii~~~~~vt~it~lSa~~I~t~~~vk~Gg~yflis~sl 105 (643)
T KOG2083|consen 27 PVLFGWWDGVFVRCMLNIFGVILFLRLGWIVGQAG-IGNSVLIIGLTTVVTLITVLSAIAIVTRGQVKSGGVYFLISRSL 105 (643)
T ss_pred ceEEeeeehhhhhhhHHHHHHHHhhhhhheeecch-hhhhHHHHHHHHHHHHHHHHhHheeeecceeccCcEEEEEEecc
Confidence 44678887665532 22445555555555555555 233333345677778888888888888776 5899999999999
Q ss_pred CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Q psy9204 167 GELPAFLRLWVALLIMRPTTQAIVALTFAQYAIKPFFPDSELPDRAVLLLAAACLCVLTAVNCMSVSWAMQVQTLFTVGK 246 (265)
Q Consensus 167 g~~~gf~~gw~~~l~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~l~~~~~in~~gvk~~~~i~~v~~~~~ 246 (265)
||..|-..|-+|.+ ...+.++....++++-+...+. .. ..+...-++.+.+++...+|..|+|+..|+|.++..+.
T Consensus 106 g~efggsigiIy~f-~~aVa~am~~vgfaEsv~~l~~-~~--s~~~i~gi~~vt~~ill~i~~ag~~w~~k~q~~ll~il 181 (643)
T KOG2083|consen 106 GPEFGGSIGIIYAF-ANAVATAMYVVGFAESVAHLFE-TE--SKEMIDGIGSVTVLILLAINVAGVEWEAKLQIVLLLIL 181 (643)
T ss_pred cccccchhHHHHHH-HHHHHHHHhhhhHHHHHHHHHH-hc--cHHHhcchhHHHHHHHHHhhhccchhHHHHHHHHHHHH
Confidence 99999999999999 7888899999999999887542 22 23344458888889999999999999999999999888
Q ss_pred HHHHHHHHHHHH
Q psy9204 247 LVALFGIIAAGI 258 (265)
Q Consensus 247 i~~~~~~ii~g~ 258 (265)
++.+.-+++..+
T Consensus 182 ~iai~~f~~gs~ 193 (643)
T KOG2083|consen 182 LIAIADFLVGSF 193 (643)
T ss_pred HHHHHHhhhhhc
Confidence 887776665544
No 51
>KOG2082|consensus
Probab=97.91 E-value=8.8e-05 Score=71.80 Aligned_cols=152 Identities=17% Similarity=0.248 Sum_probs=103.9
Q ss_pred ccceeeecchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhccccc-cCCchHHhHHHHhCchhHHHHHHHHHHHHH
Q psy9204 105 IIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTIGALCYAELGTCIS-RSGGDYAYILVAFGELPAFLRLWVALLIMR 183 (265)
Q Consensus 105 vig~gi~~~~~~~~~~~g~~~~~i~~~~i~~l~~~~~a~~~aEl~s~~P-~~GG~y~~~~~~~g~~~gf~~gw~~~l~~~ 183 (265)
+.|+-.|.-..-+...+|- +-....-++++.+.++.+.+++.+++.=- .+||.|.+++|.+||-.|-.+|.+..+ +.
T Consensus 128 IlGVilFiRLtWvVG~AGv-~q~fllv~iCC~cTmLTaISmSAIATNGVVpaGGsYfmISRsLGPEFGgAVGlcFYL-gt 205 (1075)
T KOG2082|consen 128 ILGVILFIRLTWVVGMAGV-GQGFLLVFICCLCTMLTAISMSAIATNGVVPAGGSYFMISRSLGPEFGGAVGLCFYL-GT 205 (1075)
T ss_pred HHHHHHHHHHHHHhhhhHH-HHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCCCeeEEEecccCccccceeeehhhh-hh
Confidence 3333334443344444442 12222236777778888999988887543 478899999999999999999988877 66
Q ss_pred hhHHHHHHHHHHHHhhhhcCCCC--------CCc----hHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Q psy9204 184 PTTQAIVALTFAQYAIKPFFPDS--------ELP----DRAVLLLAAACLCVLTAVNCMSVSWAMQVQTLFTVGKLVALF 251 (265)
Q Consensus 184 ~~~~a~~~~~~~~~l~~~~~~~~--------~~~----~~~~~~i~~~~l~~~~~in~~gvk~~~~i~~v~~~~~i~~~~ 251 (265)
....+.......+.+...++|.. ..+ .....+-+.+++++..++...|+|...++..++....++.++
T Consensus 206 T~AaaMYIlGaVEi~L~Yi~P~aaIf~~~~a~~~~~am~nnlRvYGT~~Li~m~lIVf~GVK~Vnk~A~vfL~CVILSIl 285 (1075)
T KOG2082|consen 206 TVAAAMYILGAVEIFLTYIFPAAAIFGAEDAHDEAAAMLNNLRVYGTVFLILMALIVFVGVKFVNKFAPVFLACVILSIL 285 (1075)
T ss_pred HHHHHHHHHhHHHHHHHHHccHhhhcCccccccchhhhhcceehHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 66666777777777665444321 000 112456778888899999999999999999888887777776
Q ss_pred HHHHHHH
Q psy9204 252 GIIAAGI 258 (265)
Q Consensus 252 ~~ii~g~ 258 (265)
.+.+-++
T Consensus 286 aiyaG~i 292 (1075)
T KOG2082|consen 286 AIYAGGI 292 (1075)
T ss_pred HHHHhhh
Confidence 6655444
No 52
>PF01235 Na_Ala_symp: Sodium:alanine symporter family; InterPro: IPR001463 Sodium symporters can be divided by sequence and functional similarity into various groups. One such group is the sodium/alanine symporter family, the members of which transport alanine in association with sodium ions. These transporters are believed to possess 8 transmembrane (TM) helices [, ], forming a channel or pore through the cytoplasmic membrane, the interior face being hydrophilic to allow the passage of alanine molecules and sodium ions []. This family is restricted to the bacteria and archaea, examples are the alanine carrier protein from the Bacillus PS3 (Thermophilic bacterium PS-3); the D-alanine/glycine permease from Pseudoalteromonas haloplanktis (Alteromonas haloplanktis); and the hypothetical protein yaaJ from Escherichia coli.; GO: 0005283 sodium:amino acid symporter activity, 0006814 sodium ion transport, 0016020 membrane
Probab=97.82 E-value=0.002 Score=59.76 Aligned_cols=161 Identities=12% Similarity=0.078 Sum_probs=98.4
Q ss_pred cccccchhhhHHhhhccccceeeecchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhcccccc-------CCchHH
Q psy9204 88 TGQRLVRLEGVSIIVGCIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTIGALCYAELGTCISR-------SGGDYA 160 (265)
Q Consensus 88 l~r~l~~~~~~~l~i~~vig~gi~~~~~~~~~~~g~~~~~i~~~~i~~l~~~~~a~~~aEl~s~~P~-------~GG~y~ 160 (265)
-++.++.++++..+.+..+|+|-......... .|+||...+.|+.+. +.+...++=.-|+.+|.+ .||...
T Consensus 15 ~~g~iS~fqA~~~ala~~vG~GNI~GVa~AI~-~GGPGAiFWMWi~a~-~Gmatk~~E~~La~~yR~~~~~G~~~GGP~y 92 (416)
T PF01235_consen 15 EEGGISPFQALCTALAGTVGTGNIAGVATAIA-IGGPGAIFWMWISAL-LGMATKYAEVTLAQKYREKDEDGEYRGGPMY 92 (416)
T ss_pred CCCCcChHHHHHHHHHhccCcchHHHHHHHHH-hhchhHHHHHHHHHH-HHHHHHHHHHHHHHHheEECCCCCEeecHHH
Confidence 34579999999999999988886555544443 466777777777654 333333333334444432 488999
Q ss_pred hHHHHhCch-hHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Q psy9204 161 YILVAFGEL-PAFLRLWVALLIMRPTTQAIVALTFAQYAIKPFFPDSELPDRAVLLLAAACLCVLTAVNCMSVSWAMQVQ 239 (265)
Q Consensus 161 ~~~~~~g~~-~gf~~gw~~~l~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~l~~~~~in~~gvk~~~~i~ 239 (265)
|.+|.++.+ ++.+.+-..............+-+.++-+.. ..+.| .+..++++.++..++-.-|+|..+++.
T Consensus 93 yi~~gl~~k~la~~fai~~~~~~~~~~~~~Q~nsi~~~~~~----~f~i~---~~~~gi~l~~l~~~vi~GGikrI~~v~ 165 (416)
T PF01235_consen 93 YIEKGLGSKWLAILFAIFLIIAFGIGFNMVQANSIADALSS----AFGIP---PWITGIILAILVALVIFGGIKRIAKVS 165 (416)
T ss_pred HHHHHhccchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh----hcccc---HHHHHHHHHHHHHHHHHcchhHHHHHH
Confidence 999998865 3333332211101111112222222333322 22233 345677777778888889999999999
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy9204 240 TLFTVGKLVALFGIIAAG 257 (265)
Q Consensus 240 ~v~~~~~i~~~~~~ii~g 257 (265)
..+..++.+..++..+.-
T Consensus 166 ~~lVP~Ma~~Yi~~~l~i 183 (416)
T PF01235_consen 166 EKLVPFMAILYILGGLII 183 (416)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999999988777665443
No 53
>TIGR00835 agcS amino acid carrier protein. Members of the AGCS family transport alanine and/or glycine in symport with Na+ and or H+.
Probab=97.76 E-value=0.0012 Score=61.53 Aligned_cols=155 Identities=13% Similarity=0.135 Sum_probs=97.5
Q ss_pred cccchhhhHHhhhcccccee-eecchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhccccc---c----CCchHHh
Q psy9204 90 QRLVRLEGVSIIVGCIIGSG-IFVSPAGVLAETQSVGLSIVIWTVCGLLSTIGALCYAELGTCIS---R----SGGDYAY 161 (265)
Q Consensus 90 r~l~~~~~~~l~i~~vig~g-i~~~~~~~~~~~g~~~~~i~~~~i~~l~~~~~a~~~aEl~s~~P---~----~GG~y~~ 161 (265)
++++.++++..+.+..+|+| +...+.. ... |+++...+.|+.+. +.....++-.-++.++. + .||...|
T Consensus 45 g~iS~fqA~~~ala~~VG~GnI~Gva~A-i~~-GGpGAvFWMWI~al-lGm~~~~~e~~L~~~yr~~~~~g~~~GGP~yy 121 (425)
T TIGR00835 45 GGVSSFQALFTSLAARVGIGNIVGVATA-IAI-GGPGAVFWMWVTAF-IGMATKFVESTLAQKYRERDADGVFRGGPMYY 121 (425)
T ss_pred CCccHHHHHHHHHHHHHhhhHHHHHHHH-HHh-cCCCchHHHHHHHH-HHHHHHHHHHHHHHHeeeeCCCCCEecChHHH
Confidence 46999999999999999997 6555555 444 44666666666543 33333333333333333 2 2455578
Q ss_pred HHHHhC-chhHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Q psy9204 162 ILVAFG-ELPAFLRLWVALLIMRPTTQAIVALTFAQYAIKPFFPDSELPDRAVLLLAAACLCVLTAVNCMSVSWAMQVQT 240 (265)
Q Consensus 162 ~~~~~g-~~~gf~~gw~~~l~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~l~~~~~in~~gvk~~~~i~~ 240 (265)
.++.++ |++|.+.+.. .+.+............++.+...+ +.| .+.+.+++.++..++-.-|+|..+|+..
T Consensus 122 i~~gl~~k~lg~lfa~~-~i~~f~~~~~~Q~nsi~~~~~~~~----~~~---~~v~~i~l~~l~~~vi~GGik~Ia~v~~ 193 (425)
T TIGR00835 122 IKKGLGMRWLAVLFAVF-LIASFGIGNMVQANAIASALSNAF----NVP---KLVTGIVLTVLTALIIFGGLKRIAKISS 193 (425)
T ss_pred HHHHhCccHHHHHHHHH-HHHHHhhhHHHHHHHHHHHHHHHc----CCc---HHHHHHHHHHHHHHHHhcCchHHHHHHH
Confidence 887765 7777776655 331323334555566666665322 223 3456666666666676679999999999
Q ss_pred HHHHHHHHHHHHHHH
Q psy9204 241 LFTVGKLVALFGIIA 255 (265)
Q Consensus 241 v~~~~~i~~~~~~ii 255 (265)
.+..+..+..++..+
T Consensus 194 ~lvP~m~~~Y~~~~l 208 (425)
T TIGR00835 194 VVVPFMALLYVIMAL 208 (425)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999998887755443
No 54
>COG1115 AlsT Na+/alanine symporter [Amino acid transport and metabolism]
Probab=97.59 E-value=0.0065 Score=56.30 Aligned_cols=160 Identities=13% Similarity=0.125 Sum_probs=105.9
Q ss_pred ccccccchhhhHHhhhccccceeeecchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhcccccc-------CCchH
Q psy9204 87 VTGQRLVRLEGVSIIVGCIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTIGALCYAELGTCISR-------SGGDY 159 (265)
Q Consensus 87 ~l~r~l~~~~~~~l~i~~vig~gi~~~~~~~~~~~g~~~~~i~~~~i~~l~~~~~a~~~aEl~s~~P~-------~GG~y 159 (265)
+-++.++.++++..+.+.-+|+|=...... +...|+||...+.|+.+. +-+...++=+-|+..|.+ .||+-
T Consensus 58 ~~~~~vS~FqAl~~sla~~VGtGNIaGVAt-AI~~GGPGAvFWMWi~Al-~Gmat~f~E~~La~~Yr~kd~~G~~~GGP~ 135 (452)
T COG1115 58 AGKGGVSSFQALMTSLAARVGTGNIAGVAT-AIALGGPGAVFWMWIVAL-FGMATKFAESTLAQKYRVKDKDGEYRGGPA 135 (452)
T ss_pred CCCCCcChHHHHHHHHHhccCcchHHHHHH-HHHcCCCccHHHHHHHHH-HHHHHHHHHHHHHhheeEeCCCCCCcCChH
Confidence 356789999999999999888875554433 334477777777888765 333344443446666652 48889
Q ss_pred HhHHHHhC-chhHHHHHHHHHHHHHh-hHHHHHHHHHHHHhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHhhhhhHHHH
Q psy9204 160 AYILVAFG-ELPAFLRLWVALLIMRP-TTQAIVALTFAQYAIKPFFPDSELPDRAVLLLAAACLCVLTAVNCMSVSWAMQ 237 (265)
Q Consensus 160 ~~~~~~~g-~~~gf~~gw~~~l~~~~-~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~l~~~~~in~~gvk~~~~ 237 (265)
.|.++.+| |++|-+.+....+ .+. ......+-+.++.+...+ +.| .+...+++.++..++-..|+|..+|
T Consensus 136 yYi~kGl~~r~l~v~FA~~li~-afg~i~n~vQ~NsIa~a~~~af----~~~---~~~~gi~la~l~~~VI~GGi~rIa~ 207 (452)
T COG1115 136 YYIEKGLGMRWLAVLFAFALIA-AFGFIGNGVQSNSIASALANAF----GIP---PLVTGIVLALLVALVIFGGIKRIAK 207 (452)
T ss_pred HHHHhhcCCcHHHHHHHHHHHH-HHHhhcchhhHHHHHHHHHHhc----CCc---HHHHHHHHHHHHHHHHHcchHHHHH
Confidence 99999988 4566666533222 222 234444555555555432 223 4577778888888889999999999
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy9204 238 VQTLFTVGKLVALFGIIAA 256 (265)
Q Consensus 238 i~~v~~~~~i~~~~~~ii~ 256 (265)
+......+.-+..++..+.
T Consensus 208 v~~~vVPfMA~~Yi~~~~~ 226 (452)
T COG1115 208 VSSKVVPFMAILYVLVALV 226 (452)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9999888887766655443
No 55
>KOG1288|consensus
Probab=97.44 E-value=0.00024 Score=68.28 Aligned_cols=162 Identities=15% Similarity=0.094 Sum_probs=112.2
Q ss_pred ccchhhhHHhhhcc-ccceeeecchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhccccc-cCCchHHhHHHHhCc
Q psy9204 91 RLVRLEGVSIIVGC-IIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTIGALCYAELGTCIS-RSGGDYAYILVAFGE 168 (265)
Q Consensus 91 ~l~~~~~~~l~i~~-vig~gi~~~~~~~~~~~g~~~~~i~~~~i~~l~~~~~a~~~aEl~s~~P-~~GG~y~~~~~~~g~ 168 (265)
+|+.++-+.....- |...-.|.-.+.+...+|- -..+.-.+++-.+.++..++...+++.=- +.||.|.+++|.+||
T Consensus 66 kLgTf~GvfvPtaLsmfSiLlFLR~gfIvG~aGl-l~Tll~lliaY~I~llTvlSicAIsTNGaV~GGGaYymISRsLGp 144 (945)
T KOG1288|consen 66 KLGTFEGVFVPTALSMFSILLFLRFGFIVGQAGL-LKTLLMLLIAYAILLLTVLSICAISTNGAVRGGGAYYMISRSLGP 144 (945)
T ss_pred cccceeeEechhHHHHHHHHHHHHHhhhhcchHH-HHHHHHHHHHHHHHHHHHHHHhhhccCCceecCceEEEEEcccCc
Confidence 56665544332222 2222334444555555441 11222245555556666777777776554 478899999999999
Q ss_pred hhHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhcCC---------CCCCchHHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Q psy9204 169 LPAFLRLWVALLIMRPTTQAIVALTFAQYAIKPFFP---------DSELPDRAVLLLAAACLCVLTAVNCMSVSWAMQVQ 239 (265)
Q Consensus 169 ~~gf~~gw~~~l~~~~~~~a~~~~~~~~~l~~~~~~---------~~~~~~~~~~~i~~~~l~~~~~in~~gvk~~~~i~ 239 (265)
..|-..|-+..+ +.+..++.+...+.+-+...+.+ ..+...|+..+.+..++.++..+.+.|....+|..
T Consensus 145 EfGGSIGllFf~-anV~~~am~isG~vE~il~nfG~~a~g~sg~~~lP~g~ww~fly~t~vl~l~~~vc~lGsalfAkas 223 (945)
T KOG1288|consen 145 EFGGSIGLLFFV-ANVFNCAMNISGFVEPILDNFGKEAQGASGSQFLPDGYWWRFLYTTLVLALCLIVCLLGSALFAKAS 223 (945)
T ss_pred ccCCeeeehhhH-HHHhcchhhhhhhhHHHHHhcCccccCCcccccCCCCcchhhHHHHHHHHHHHHHHHhhHHHHHhhh
Confidence 999999988888 88899999999999988865542 23445789999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHH
Q psy9204 240 TLFTVGKLVALFGII 254 (265)
Q Consensus 240 ~v~~~~~i~~~~~~i 254 (265)
++..++..+.+..+.
T Consensus 224 ~i~f~~is~s~~si~ 238 (945)
T KOG1288|consen 224 NILFVVISVSLFSIP 238 (945)
T ss_pred hhhhhHHHHHHhhhh
Confidence 887776655554443
No 56
>PRK10655 potE putrescine transporter; Provisional
Probab=97.44 E-value=0.014 Score=54.60 Aligned_cols=33 Identities=18% Similarity=0.277 Sum_probs=30.6
Q ss_pred hhHHHHHHHhhhhccCCcccchhhhccccCCCC
Q psy9204 50 ITKISLALYSGLFAFGGWNYLNFVVDELQDPYN 82 (265)
Q Consensus 50 ~~~~~~a~~~~~~~y~Gw~~~n~v~~e~k~p~~ 82 (265)
..++..++..+.|+|.||+...++.||.|||+|
T Consensus 188 ~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~r 220 (438)
T PRK10655 188 FSAVGSSIAMTLWAFLGLESACANSDAVENPER 220 (438)
T ss_pred HHHHHHHHHHHHHHHhhhhhhhhhHHHhhCccc
Confidence 467788899999999999999999999999998
No 57
>PRK11021 putative transporter; Provisional
Probab=97.26 E-value=0.062 Score=49.78 Aligned_cols=34 Identities=18% Similarity=0.294 Sum_probs=31.7
Q ss_pred ChhHHHHHHHhhhhccCCcccchhhhccccCCCC
Q psy9204 49 DITKISLALYSGLFAFGGWNYLNFVVDELQDPYN 82 (265)
Q Consensus 49 ~~~~~~~a~~~~~~~y~Gw~~~n~v~~e~k~p~~ 82 (265)
++.++..++..+.|+|.||+....+.||.|||+|
T Consensus 175 ~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~k 208 (410)
T PRK11021 175 EWSGLFAALGVMFWCFVGIEAFAHLASEFKNPER 208 (410)
T ss_pred cHHHHHHHHHHHHHHHhcHHHHHhhHHhccCccc
Confidence 5677888999999999999999999999999998
No 58
>PRK10644 arginine:agmatin antiporter; Provisional
Probab=97.04 E-value=0.044 Score=51.39 Aligned_cols=34 Identities=18% Similarity=0.260 Sum_probs=30.8
Q ss_pred ChhHHHHHHHhhhhccCCcccchhhhccccCCCC
Q psy9204 49 DITKISLALYSGLFAFGGWNYLNFVVDELQDPYN 82 (265)
Q Consensus 49 ~~~~~~~a~~~~~~~y~Gw~~~n~v~~e~k~p~~ 82 (265)
....+..++..+.|+|.||+....+.||.|||+|
T Consensus 189 ~~~~~~~~~~~~~~af~G~e~~~~~aeE~k~P~r 222 (445)
T PRK10644 189 TFGAIQSTLNVTLWSFIGVESASVAAGVVKNPKR 222 (445)
T ss_pred hHHHHHHHHHHHHHHHHhHHHHHHHHHHhhCccc
Confidence 3556777899999999999999999999999998
No 59
>PRK10435 cadB lysine/cadaverine antiporter; Provisional
Probab=97.02 E-value=0.055 Score=50.61 Aligned_cols=34 Identities=21% Similarity=0.228 Sum_probs=31.7
Q ss_pred ChhHHHHHHHhhhhccCCcccchhhhccccCCCC
Q psy9204 49 DITKISLALYSGLFAFGGWNYLNFVVDELQDPYN 82 (265)
Q Consensus 49 ~~~~~~~a~~~~~~~y~Gw~~~n~v~~e~k~p~~ 82 (265)
+..++..++..+.|+|.||+......||.|||+|
T Consensus 185 ~~~~~~~a~~~~~faf~G~E~~~~~a~E~knP~r 218 (435)
T PRK10435 185 DGHAIIKSILLCLWAFVGVESAAVSTGMVKNPKR 218 (435)
T ss_pred hHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCccc
Confidence 4668888999999999999999999999999998
No 60
>PRK11375 allantoin permease; Provisional
Probab=96.77 E-value=0.16 Score=48.45 Aligned_cols=173 Identities=8% Similarity=-0.034 Sum_probs=87.2
Q ss_pred CccccccccchhhhHHhhhccccceeeecchHHHHHhcc-cchHHHHHHHHHHHHHHHHHHHHHHhccccccCCchHHhH
Q psy9204 84 VLPVTGQRLVRLEGVSIIVGCIIGSGIFVSPAGVLAETQ-SVGLSIVIWTVCGLLSTIGALCYAELGTCISRSGGDYAYI 162 (265)
Q Consensus 84 ~~~~l~r~l~~~~~~~l~i~~vig~gi~~~~~~~~~~~g-~~~~~i~~~~i~~l~~~~~a~~~aEl~s~~P~~GG~y~~~ 162 (265)
|.|+-+|+-++++...+=++.......+...+..+. .| +...++++-+++.++..+.....+..+.++.. +.....
T Consensus 19 pvp~~~Rt~~~~~~~~~W~g~~~~i~~~~~~g~~l~-~GLs~~~ai~ai~lG~~i~~~~~~l~g~~G~~~Gl--~~~v~s 95 (484)
T PRK11375 19 PKTQSQRTWKTFNYFTLWMGSVHNVPNYVMVGGFFI-LGLSTFSIMLAIILSAFFIAAVMVLNGAAGSKYGV--PFAMIL 95 (484)
T ss_pred cCCccccCCcHHHHHHHHHHHhccHHHHHHHHHHHH-ccchHHHHHHHHHHHHHHHHHHHHHhcccccccCC--ChhHhH
Confidence 446667888888877776655443333222222222 22 22333333333333333333333333333221 245677
Q ss_pred HHHhCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhhh---hcCCCCC---C-----c-hHHHHHHHHHHHHHHHHHHhh
Q psy9204 163 LVAFGELPAFLRLWVALLIMRPTTQAIVALTFAQYAIK---PFFPDSE---L-----P-DRAVLLLAAACLCVLTAVNCM 230 (265)
Q Consensus 163 ~~~~g~~~gf~~gw~~~l~~~~~~~a~~~~~~~~~l~~---~~~~~~~---~-----~-~~~~~~i~~~~l~~~~~in~~ 230 (265)
|..||.+-+.+.+....+.......+......++.+.. .+.|... + + +....+..+++.++.+.+.++
T Consensus 96 R~sFG~~Gs~l~~~~rai~~~igW~~vqt~~~g~al~~~l~~i~~~~~~~~~~~~~~g~~~~~~i~~~i~~~l~~~~~~~ 175 (484)
T PRK11375 96 RASYGVRGALFPGLLRGGIAAIMWFGLQCYAGSLALLILIGKIWPGFLTLGGDFTLLGLSLPGLITFLIFWLVNVGIGFG 175 (484)
T ss_pred HHHHccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCCcHHHHHHHHHHHHHHHHHHHc
Confidence 78888775565555553112233444444444444331 2222111 0 0 112233344555666677789
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9204 231 SVSWAMQVQTLFTVGKLVALFGIIAAGIG 259 (265)
Q Consensus 231 gvk~~~~i~~v~~~~~i~~~~~~ii~g~~ 259 (265)
|.|...|++.+...+.++..+...+..+.
T Consensus 176 g~~~i~~l~~i~~p~~~i~~~~~~~~~~~ 204 (484)
T PRK11375 176 GGKVLNKFTAILNPCIYIVFGGMAIWAIS 204 (484)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999888887766655544443
No 61
>TIGR00911 2A0308 L-type amino acid transporter.
Probab=96.75 E-value=0.14 Score=48.76 Aligned_cols=35 Identities=54% Similarity=1.162 Sum_probs=31.9
Q ss_pred CChhHHHHHHHhhhhccCCcccchhhhccccCCCC
Q psy9204 48 YDITKISLALYSGLFAFGGWNYLNFVVDELQDPYN 82 (265)
Q Consensus 48 ~~~~~~~~a~~~~~~~y~Gw~~~n~v~~e~k~p~~ 82 (265)
.+..++..++..+.|+|.||+....+.||.|||+|
T Consensus 232 ~~~~~~~~a~~~~~~af~G~e~~~~~a~E~knP~r 266 (501)
T TIGR00911 232 TSAGGIVLAFYSGIWAYGGWNYLNFVTEEVKNPYR 266 (501)
T ss_pred CcHHHHHHHHHHHHHHHHhHHHHhhhHHHhcCchh
Confidence 34667888999999999999999999999999998
No 62
>PRK10249 phenylalanine transporter; Provisional
Probab=96.66 E-value=0.19 Score=47.36 Aligned_cols=34 Identities=26% Similarity=0.488 Sum_probs=31.6
Q ss_pred ChhHHHHHHHhhhhccCCcccchhhhccccCCCC
Q psy9204 49 DITKISLALYSGLFAFGGWNYLNFVVDELQDPYN 82 (265)
Q Consensus 49 ~~~~~~~a~~~~~~~y~Gw~~~n~v~~e~k~p~~ 82 (265)
.+.++..++..+.|+|.||+......||.|||+|
T Consensus 207 g~~~~~~~~~~~~~af~G~e~~~~~a~E~~~P~k 240 (458)
T PRK10249 207 GWNGLILSLAVIMFSFGGLELIGITAAEARDPEK 240 (458)
T ss_pred cHHHHHHHHHHHHHHHcCHHHHHHHHHHhcCHhh
Confidence 4667888999999999999999999999999998
No 63
>PRK11049 D-alanine/D-serine/glycine permease; Provisional
Probab=96.62 E-value=0.11 Score=49.22 Aligned_cols=33 Identities=21% Similarity=0.348 Sum_probs=30.8
Q ss_pred hhHHHHHHHhhhhccCCcccchhhhccccCCCC
Q psy9204 50 ITKISLALYSGLFAFGGWNYLNFVVDELQDPYN 82 (265)
Q Consensus 50 ~~~~~~a~~~~~~~y~Gw~~~n~v~~e~k~p~~ 82 (265)
+.++..++..+.|+|.||+....+.||.|||+|
T Consensus 210 ~~~~~~~~~~~~~af~G~e~~~~~a~E~knP~r 242 (469)
T PRK11049 210 LSGFFAGFQIAVFAFVGIELVGTTAAETKDPEK 242 (469)
T ss_pred HHHHHHHHHHHHHHHhcHHHHHHHHHHhcCHhh
Confidence 556888999999999999999999999999998
No 64
>TIGR03428 ureacarb_perm permease, urea carboxylase system. A number of bacteria obtain nitrogen by biotin- and ATP-dependent urea degradation system distinct from urease. The two characterized proteins of this system are the enzymes urea carboxylase and allophanate hydrolase, but other, uncharacterized proteins co-occur as genes encoded nearby in multiple organisms. This family includes predicted permeases of the amino acid permease family, likely to transport either urea or a compound from which urea is derived. It is found so far only Actinobacteria, whereas a number of other species with the urea carboxylase have an adjacent ABC transporter operon.
Probab=96.51 E-value=0.37 Score=45.57 Aligned_cols=32 Identities=9% Similarity=0.178 Sum_probs=28.7
Q ss_pred hHHHHHHHhhhhccCCcccchhhhccccCCCC
Q psy9204 51 TKISLALYSGLFAFGGWNYLNFVVDELQDPYN 82 (265)
Q Consensus 51 ~~~~~a~~~~~~~y~Gw~~~n~v~~e~k~p~~ 82 (265)
..+..+.....|+|.||+....+.||.|||+|
T Consensus 213 ~~~~~~~~~~~~~f~G~e~~~~~aeE~knP~r 244 (475)
T TIGR03428 213 GAFLVSGLMAAYVMVGFGSAGELSEETKNPRR 244 (475)
T ss_pred HHHHHHHHHHHHHhcCcchHHHHHHHhcCcch
Confidence 34666788899999999999999999999999
No 65
>TIGR00796 livcs branched-chain amino acid uptake carrier. transmembrane helical spanners.
Probab=96.49 E-value=0.088 Score=48.48 Aligned_cols=163 Identities=17% Similarity=0.178 Sum_probs=91.0
Q ss_pred hHHHHHHHhhhhccC-------Ccccchhhhc-cccCCCCCCccccccccchhhhHHhhhccccceeeecchHHHHHhcc
Q psy9204 51 TKISLALYSGLFAFG-------GWNYLNFVVD-ELQDPYNLVLPVTGQRLVRLEGVSIIVGCIIGSGIFVSPAGVLAETQ 122 (265)
Q Consensus 51 ~~~~~a~~~~~~~y~-------Gw~~~n~v~~-e~k~p~~~~~~~l~r~l~~~~~~~l~i~~vig~gi~~~~~~~~~~~g 122 (265)
+.+..++.++.++|| ||...+.+.+ |.|||++. .+ |. + .+|
T Consensus 174 ~~f~~g~l~GY~TmD~laal~fg~iiv~~i~~~g~~~~~~~-~~---~~--------i-------------------~~G 222 (378)
T TIGR00796 174 QAFSKGFLEGYLTMDALAALVFGIIVVNAIRSRGVTKPKKI-TK---YT--------I-------------------KAG 222 (378)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHH-HH---HH--------H-------------------HHH
Confidence 468899999999999 9999999998 88888872 11 00 0 001
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHhcccccc--CCch--HHhHHHHhCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Q psy9204 123 SVGLSIVIWTVCGLLSTIGALCYAELGTCISR--SGGD--YAYILVAFGELPAFLRLWVALLIMRPTTQAIVALTFAQYA 198 (265)
Q Consensus 123 ~~~~~i~~~~i~~l~~~~~a~~~aEl~s~~P~--~GG~--y~~~~~~~g~~~gf~~gw~~~l~~~~~~~a~~~~~~~~~l 198 (265)
-.....+..+..+ +..+.+..-.+ .++ +|+. -..+++.+|+.-+.+.+-...+ .+..+......++++++
T Consensus 223 ~ia~i~l~~vY~~-L~~lGa~~~~~----~~~~~~~~~~l~~~a~~~~G~~G~~ll~i~v~l-ACLtT~iGli~~~a~~f 296 (378)
T TIGR00796 223 LIAAVLLAFIYLS-LFYLGATSAAA----AGDAVNGAQILSAYSQHLFGSLGSFLLGLIITL-ACLTTAVGLTTACSEYF 296 (378)
T ss_pred HHHHHHHHHHHHH-HHHHhcCcHhh----hcccCCcHHHHHHHHHHHcchhHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 0000111112211 12222222222 222 2322 3556689999988888877777 67677777777888998
Q ss_pred hhhcCCCCCCchHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy9204 199 IKPFFPDSELPDRAVLLLAAACLCVLTAVNCMSVSWAMQVQTLFTVGKLVALFGIIAA 256 (265)
Q Consensus 199 ~~~~~~~~~~~~~~~~~i~~~~l~~~~~in~~gvk~~~~i~~v~~~~~i~~~~~~ii~ 256 (265)
.. +.+. .| .....++..+....+...|.+..-++..-...+.--..++.++.
T Consensus 297 ~~-~~~k--~~---y~~~v~~~~l~s~~ia~~Gl~~Ii~~~~PvL~~~YP~~i~lill 348 (378)
T TIGR00796 297 HK-LVPK--LS---YKTWVIVFTLFSFIVANLGLTQIISISIPVLMIIYPLAIVLILL 348 (378)
T ss_pred HH-hcCC--CC---HHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 86 3443 22 22333444445555555676666555444433333333333333
No 66
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family. This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions.
Probab=96.48 E-value=0.36 Score=45.66 Aligned_cols=33 Identities=9% Similarity=0.113 Sum_probs=29.6
Q ss_pred ChhHHHHHHHhhhhccCCcccchhhhccccCCCC
Q psy9204 49 DITKISLALYSGLFAFGGWNYLNFVVDELQDPYN 82 (265)
Q Consensus 49 ~~~~~~~a~~~~~~~y~Gw~~~n~v~~e~k~p~~ 82 (265)
.+..+..++....|+|.||+...++.||.|| +|
T Consensus 197 ~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~-~r 229 (473)
T TIGR00905 197 VFSQVKNTMLVTLWVFIGIEGAVVSSGRAKN-KS 229 (473)
T ss_pred hHHHHHHHHHHHHHHHHhHHHHHHHHHHHhc-cc
Confidence 3567788899999999999999999999999 76
No 67
>PRK10197 gamma-aminobutyrate transporter; Provisional
Probab=96.44 E-value=0.32 Score=45.67 Aligned_cols=34 Identities=18% Similarity=0.293 Sum_probs=31.9
Q ss_pred ChhHHHHHHHhhhhccCCcccchhhhccccCCCC
Q psy9204 49 DITKISLALYSGLFAFGGWNYLNFVVDELQDPYN 82 (265)
Q Consensus 49 ~~~~~~~a~~~~~~~y~Gw~~~n~v~~e~k~p~~ 82 (265)
.+.++..++..+.|+|.||+......||.|||+|
T Consensus 179 g~~~~~~a~~~~~faf~G~e~~~~~a~E~knP~r 212 (446)
T PRK10197 179 GFGAVLSAMLITMFSFMGAEIVTIAAAESDTPEK 212 (446)
T ss_pred cHHHHHHHHHHHHHHHhCHHHHHHHHHHhcChhh
Confidence 3668899999999999999999999999999998
No 68
>PRK11357 frlA putative fructoselysine transporter; Provisional
Probab=96.15 E-value=0.34 Score=45.33 Aligned_cols=33 Identities=9% Similarity=0.337 Sum_probs=30.2
Q ss_pred hhHHHHHHHhhhhccCCcccchhhhccccCCCC
Q psy9204 50 ITKISLALYSGLFAFGGWNYLNFVVDELQDPYN 82 (265)
Q Consensus 50 ~~~~~~a~~~~~~~y~Gw~~~n~v~~e~k~p~~ 82 (265)
+.++..++..++|+|+||+...++.||.|||+|
T Consensus 194 ~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~r 226 (445)
T PRK11357 194 FMALLAGISATSWSYTGMASICYMTGEIKNPGK 226 (445)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHhhHHHhcCccc
Confidence 456777888999999999999999999999998
No 69
>TIGR00913 2A0310 amino acid permease (yeast).
Probab=96.13 E-value=0.47 Score=44.81 Aligned_cols=33 Identities=18% Similarity=0.438 Sum_probs=31.0
Q ss_pred hhHHHHHHHhhhhccCCcccchhhhccccCCCC
Q psy9204 50 ITKISLALYSGLFAFGGWNYLNFVVDELQDPYN 82 (265)
Q Consensus 50 ~~~~~~a~~~~~~~y~Gw~~~n~v~~e~k~p~~ 82 (265)
..++..++..++|+|.||+....+.||.|||+|
T Consensus 196 ~~~~~~~~~~~~~af~G~e~~~~~a~E~knP~r 228 (478)
T TIGR00913 196 FKGVCSVFVTAAFSFGGTELVALTAGEAANPRK 228 (478)
T ss_pred HHHHHHHHHHHHhhhccHHHHHHHHHhhcChhh
Confidence 567888999999999999999999999999998
No 70
>PRK11387 S-methylmethionine transporter; Provisional
Probab=96.03 E-value=0.44 Score=45.05 Aligned_cols=33 Identities=21% Similarity=0.336 Sum_probs=29.9
Q ss_pred hhHHHHHHHhhhhccCCcccchhhhccccCCCC
Q psy9204 50 ITKISLALYSGLFAFGGWNYLNFVVDELQDPYN 82 (265)
Q Consensus 50 ~~~~~~a~~~~~~~y~Gw~~~n~v~~e~k~p~~ 82 (265)
..++..++..+.|+|.||+......||.|||+|
T Consensus 205 ~~~~~~~~~~~~faf~G~e~~~~~a~E~knP~r 237 (471)
T PRK11387 205 GLPILMTMVAVNFAFSGTELIGIAAGETENPAK 237 (471)
T ss_pred HHHHHHHHHHHHHHHcCHHHHHHHHHHhcChhh
Confidence 346778888999999999999999999999998
No 71
>TIGR01773 GABAperm gamma-aminobutyrate permease. GabP is highly homologous to amino acid permeases from B. subtilis, E. coli, as well as to other members of the amino acid permease family (pfam00324). A member of the APC (amine-polyamine-choline) transporter superfamily, GABA permease possesses a "consensus amphiphatic region" (CAR) found to be evolutionarily conserved within this transport family. This amphiphatic region is located between helix 8 and cytoplasmic loop 8-9, forming a potential channel domain and suggested to play a significant role in ligand recognition and translocation. Unique to GABA permeases, a conserved cysteine residue (CYS-300, E.coli) located at the beginning of the amphiphatic domain, has been determined to be critical for catalytic specificity.
Probab=95.96 E-value=0.64 Score=43.59 Aligned_cols=34 Identities=24% Similarity=0.425 Sum_probs=31.5
Q ss_pred ChhHHHHHHHhhhhccCCcccchhhhccccCCCC
Q psy9204 49 DITKISLALYSGLFAFGGWNYLNFVVDELQDPYN 82 (265)
Q Consensus 49 ~~~~~~~a~~~~~~~y~Gw~~~n~v~~e~k~p~~ 82 (265)
++.++..++..+.|+|.||+....+.||.|||+|
T Consensus 199 g~~~~~~a~~~~~~af~G~e~~~~~a~E~k~P~r 232 (452)
T TIGR01773 199 GIGAVLLAILVTMFSFMGTEIVTIAAAESSNPIK 232 (452)
T ss_pred cHHHHHHHHHHHHHHhccHHHHhHHHHhhcChhh
Confidence 3567889999999999999999999999999998
No 72
>TIGR00909 2A0306 amino acid transporter.
Probab=95.93 E-value=0.61 Score=43.29 Aligned_cols=34 Identities=21% Similarity=0.356 Sum_probs=31.2
Q ss_pred ChhHHHHHHHhhhhccCCcccchhhhccccCCCC
Q psy9204 49 DITKISLALYSGLFAFGGWNYLNFVVDELQDPYN 82 (265)
Q Consensus 49 ~~~~~~~a~~~~~~~y~Gw~~~n~v~~e~k~p~~ 82 (265)
+.+++..++..+.|+|.||+...++.||.|||+|
T Consensus 193 ~~~~~~~~~~~~~~af~G~e~~~~~~~E~~~p~r 226 (429)
T TIGR00909 193 GFGGVGAATALVFFAFIGFEAISTAAEEVKNPER 226 (429)
T ss_pred cHHHHHHHHHHHHHHHhhHHHHHhhHHhccCccc
Confidence 4567888999999999999999999999999988
No 73
>TIGR00800 ncs1 NCS1 nucleoside transporter family. The NCS1 family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.
Probab=95.89 E-value=0.46 Score=44.61 Aligned_cols=166 Identities=14% Similarity=0.036 Sum_probs=77.2
Q ss_pred ccccccccchhhhHHhhhccccceeeecchHHHHHhcc-cchHHHHHHHHHHHHHHHHHHHHHHhccccccCCchHHhHH
Q psy9204 85 LPVTGQRLVRLEGVSIIVGCIIGSGIFVSPAGVLAETQ-SVGLSIVIWTVCGLLSTIGALCYAELGTCISRSGGDYAYIL 163 (265)
Q Consensus 85 ~~~l~r~l~~~~~~~l~i~~vig~gi~~~~~~~~~~~g-~~~~~i~~~~i~~l~~~~~a~~~aEl~s~~P~~GG~y~~~~ 163 (265)
.|+-+|+-+.++...+=++..+....+..... ....| +...++++-+++.++........+..+.++-. ......|
T Consensus 7 vp~~~R~~~~~~~~~~W~~~~~~v~~~~~Ga~-l~~~GLs~~~ailai~lG~~i~~~~~~l~~~~G~r~Gl--~~~v~sR 83 (442)
T TIGR00800 7 VKEEERTWSFLNYFSLWLGAAFNIATWAIGAL-GLPLGLSWWQSVIAIILGNLLGGIFVALNSRAGAKYGL--PFPVLSR 83 (442)
T ss_pred CCcccCCccHHHHHHHHHHHhhhHHHHHHHHH-HHhcCCcHHHHHHHHHHHHHHHHHHHHHhhhhHHHhCC--Ccchhhh
Confidence 34456666777766665554332222222111 11112 22223333233333333333333333333221 2356677
Q ss_pred HHhCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhhh---hcCCCCC-Cch--HHHHHHHHHHHHH--HHHHHhhhhhHH
Q psy9204 164 VAFGELPAFLRLWVALLIMRPTTQAIVALTFAQYAIK---PFFPDSE-LPD--RAVLLLAAACLCV--LTAVNCMSVSWA 235 (265)
Q Consensus 164 ~~~g~~~gf~~gw~~~l~~~~~~~a~~~~~~~~~l~~---~~~~~~~-~~~--~~~~~i~~~~l~~--~~~in~~gvk~~ 235 (265)
..||.+-+.+.....++ ......+.++...++.+.. .+.+... .++ .....++.+++.. .......|.|..
T Consensus 84 ~~FG~~Gs~~~~~~~~i-~~igW~av~~~~~g~al~~~l~~i~~~~~~~~~~~t~~~~~~~~i~~~l~~~~~~~~g~~~~ 162 (442)
T TIGR00800 84 ASFGIYGSLLPSLLRIV-MAIGWYGVQAWVGGLCVALMLDSIFPGYLHLGNGMTTLELICFIIFWALVLVFLFFFGYKIR 162 (442)
T ss_pred hhhhhhHhHHHHHHHHH-HHHHHHHHHHHHhHHHHHHHHHHhcccccccCCcccHHHHHHHHHHHHHHHHHHHcCHHHHH
Confidence 88998888887777776 5566677777776655432 2223210 010 0011222222222 223456677776
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy9204 236 MQVQTLFTVGKLVALFGII 254 (265)
Q Consensus 236 ~~i~~v~~~~~i~~~~~~i 254 (265)
.+.+.......++.+++.+
T Consensus 163 ~~~~~~a~~~~~~~~~~~~ 181 (442)
T TIGR00800 163 HLFEWLAVVPPFAAFGMLI 181 (442)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 6666666655554444443
No 74
>PRK15049 L-asparagine permease; Provisional
Probab=95.87 E-value=0.56 Score=44.78 Aligned_cols=33 Identities=18% Similarity=0.302 Sum_probs=28.8
Q ss_pred hhHHHHHHHhhhhccCCcccchhhhccccCCCC
Q psy9204 50 ITKISLALYSGLFAFGGWNYLNFVVDELQDPYN 82 (265)
Q Consensus 50 ~~~~~~a~~~~~~~y~Gw~~~n~v~~e~k~p~~ 82 (265)
......++..+.|+|.||+....+.||.|||+|
T Consensus 219 ~~~~~~~~~~~~faf~G~e~i~~~aeE~knP~r 251 (499)
T PRK15049 219 LLPALVLIQGVVFAFASIEMVGTAAGECKDPQT 251 (499)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHhcChhh
Confidence 344556778899999999999999999999998
No 75
>TIGR00907 2A0304 amino acid permease (GABA permease).
Probab=95.82 E-value=1.1 Score=42.47 Aligned_cols=31 Identities=16% Similarity=0.377 Sum_probs=27.9
Q ss_pred HHHHHHHhhhhccCCcccchhhhccccCCCC
Q psy9204 52 KISLALYSGLFAFGGWNYLNFVVDELQDPYN 82 (265)
Q Consensus 52 ~~~~a~~~~~~~y~Gw~~~n~v~~e~k~p~~ 82 (265)
....++..+.|+|.||+....+.||.|||+|
T Consensus 218 ~~~~~~~~~~fsf~G~e~~~~~a~E~knP~r 248 (482)
T TIGR00907 218 AFLLGLLNPAWSMTGYDGTAHMAEEIENPEV 248 (482)
T ss_pred hhhhhhhhhHHHhcCcchhhHHHHhcCChhh
Confidence 3556778899999999999999999999998
No 76
>PRK10836 lysine transporter; Provisional
Probab=95.75 E-value=1.5 Score=41.72 Aligned_cols=31 Identities=19% Similarity=0.236 Sum_probs=25.2
Q ss_pred HHHHHHHhhhhccCCcccchhhhccccCCCC
Q psy9204 52 KISLALYSGLFAFGGWNYLNFVVDELQDPYN 82 (265)
Q Consensus 52 ~~~~a~~~~~~~y~Gw~~~n~v~~e~k~p~~ 82 (265)
.+..++....|+|+||+....+.||.|||+|
T Consensus 206 ~~~~~~~~~~faf~G~e~~~~~a~E~knP~r 236 (489)
T PRK10836 206 AMIGVAMIVGFSFQGTELIGIAAGESEDPAK 236 (489)
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHhcCHHH
Confidence 3333344457999999999999999999998
No 77
>PRK10238 aromatic amino acid transporter; Provisional
Probab=95.61 E-value=0.65 Score=43.74 Aligned_cols=33 Identities=21% Similarity=0.466 Sum_probs=29.7
Q ss_pred hhHHHHHHHhhhhccCCcccchhhhccccCCCC
Q psy9204 50 ITKISLALYSGLFAFGGWNYLNFVVDELQDPYN 82 (265)
Q Consensus 50 ~~~~~~a~~~~~~~y~Gw~~~n~v~~e~k~p~~ 82 (265)
+.++..++..+.|+|.||+......||.|||+|
T Consensus 199 ~~~~~~~~~~~~~af~G~e~~~~~aeE~knP~r 231 (456)
T PRK10238 199 FTGLVMMMAIIMFSFGGLELVGITAAEADNPEQ 231 (456)
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHhhcChhh
Confidence 556667788899999999999999999999998
No 78
>TIGR03810 arg_ornith_anti arginine/ornithine antiporter. Members of this protein family are the arginine/ornithine antiporter, ArcD. This exchanger of ornithine for arginine occurs in a system with arginine deiminase, ornithine carbamoyltransferase, and carbamate kinase, with together turn arginine to ornithine with the generation of ATP and release of CO2.
Probab=95.56 E-value=2.2 Score=40.32 Aligned_cols=31 Identities=10% Similarity=0.203 Sum_probs=27.4
Q ss_pred hhHHHHHHHhhhhccCCcccchhhhccccCC
Q psy9204 50 ITKISLALYSGLFAFGGWNYLNFVVDELQDP 80 (265)
Q Consensus 50 ~~~~~~a~~~~~~~y~Gw~~~n~v~~e~k~p 80 (265)
..++..++....|+|.||+....+.||.||+
T Consensus 194 ~~~~~~~~~~~~~~f~G~e~~~~~a~e~k~~ 224 (468)
T TIGR03810 194 MTQVKNMMLVTVWVFIGIEGASMLSARAEKR 224 (468)
T ss_pred HHHHHHHHHHHHHHHHhHhHHhhhHhhccCc
Confidence 5567789999999999999999999999883
No 79
>PRK10580 proY putative proline-specific permease; Provisional
Probab=95.49 E-value=1.3 Score=41.62 Aligned_cols=33 Identities=24% Similarity=0.470 Sum_probs=30.2
Q ss_pred hhHHHHHHHhhhhccCCcccchhhhccccCCCC
Q psy9204 50 ITKISLALYSGLFAFGGWNYLNFVVDELQDPYN 82 (265)
Q Consensus 50 ~~~~~~a~~~~~~~y~Gw~~~n~v~~e~k~p~~ 82 (265)
+.++..++..+.|+|.||+......||.|||+|
T Consensus 198 ~~~~~~~~~~~~fsf~G~e~~~~~a~E~knP~k 230 (457)
T PRK10580 198 WLGMVMSLQMVMFAYGGIEIIGITAGEAKDPEK 230 (457)
T ss_pred hHHHHHHHHHHHHHHhCHHHHHHHHHHhcChhh
Confidence 456777899999999999999999999999998
No 80
>TIGR00906 2A0303 cationic amino acid transport permease.
Probab=95.42 E-value=1.3 Score=42.93 Aligned_cols=33 Identities=21% Similarity=0.375 Sum_probs=29.9
Q ss_pred hhHHHHHHHhhhhccCCcccchhhhccccCCCC
Q psy9204 50 ITKISLALYSGLFAFGGWNYLNFVVDELQDPYN 82 (265)
Q Consensus 50 ~~~~~~a~~~~~~~y~Gw~~~n~v~~e~k~p~~ 82 (265)
..++..++..+.|+|.||+....+.||.|||+|
T Consensus 230 ~~g~l~g~~~~~faf~Gfd~v~~~aeE~knP~r 262 (557)
T TIGR00906 230 FTGVLSGAATCFFAFIGFDAIATTGEEVKNPQR 262 (557)
T ss_pred hHHHHHHHHHHHHHHhhHHHHHHhHHhccCccc
Confidence 456777888899999999999999999999998
No 81
>PRK10746 putative transport protein YifK; Provisional
Probab=95.34 E-value=0.65 Score=43.86 Aligned_cols=34 Identities=15% Similarity=0.193 Sum_probs=31.5
Q ss_pred ChhHHHHHHHhhhhccCCcccchhhhccccCCCC
Q psy9204 49 DITKISLALYSGLFAFGGWNYLNFVVDELQDPYN 82 (265)
Q Consensus 49 ~~~~~~~a~~~~~~~y~Gw~~~n~v~~e~k~p~~ 82 (265)
.+.++..++..+.|+|.||+......||.|||+|
T Consensus 198 g~~g~~~~~~~~~faf~G~e~v~~~a~E~knP~k 231 (461)
T PRK10746 198 GWKGFLTALCIVVASYQGVELIGITAGEAKNPQV 231 (461)
T ss_pred cHHHHHHHHHHHHHHhcCHHHHHHHHHHhcChhh
Confidence 3667888999999999999999999999999998
No 82
>PRK11017 codB cytosine permease; Provisional
Probab=95.25 E-value=1.6 Score=40.61 Aligned_cols=90 Identities=12% Similarity=-0.004 Sum_probs=55.7
Q ss_pred hHHhHHHHhCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHhhhhhHHHH
Q psy9204 158 DYAYILVAFGELPAFLRLWVALLIMRPTTQAIVALTFAQYAIKPFFPDSELPDRAVLLLAAACLCVLTAVNCMSVSWAMQ 237 (265)
Q Consensus 158 ~y~~~~~~~g~~~gf~~gw~~~l~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~l~~~~~in~~gvk~~~~ 237 (265)
.....|..||.+-+.+.+....+ ......+.+....+..+.+ ..+ .+.+ ...+++.++......+|.|...|
T Consensus 73 ~~v~sR~~FG~~Gs~l~~~~~~i-~~igW~av~~~~~~~~l~~-~~~-~~~~-----~~~~i~~~l~~~~~~~G~~~i~~ 144 (404)
T PRK11017 73 THLLARFSFGEKGSWLPSLLLGF-TQVGWFGVGVAMFAIPVVK-ATG-LDIN-----LLIVLSGLLMTVTAYFGISALTI 144 (404)
T ss_pred HHHHHHHHhchhHHHHHHHHHHH-HHHhHHHHHHHHHHHHHHH-HhC-CCHH-----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566778898877777776666 4445555555555555544 222 2211 12333445556677888899999
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy9204 238 VQTLFTVGKLVALFGIIA 255 (265)
Q Consensus 238 i~~v~~~~~i~~~~~~ii 255 (265)
++++...+.++.++...+
T Consensus 145 ~~~~~~p~~~~~~~~~~~ 162 (404)
T PRK11017 145 LSRIAVPAIALLGGYSVW 162 (404)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999988877665554443
No 83
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional
Probab=95.12 E-value=0.65 Score=43.57 Aligned_cols=149 Identities=16% Similarity=0.198 Sum_probs=92.5
Q ss_pred hhccccceeeecchHHHHHhccc-chHHHHHHHHHHHHHHHHH-HHHHHhccccccCCchHHhHHHHhCchhHHHHHHHH
Q psy9204 101 IVGCIIGSGIFVSPAGVLAETQS-VGLSIVIWTVCGLLSTIGA-LCYAELGTCISRSGGDYAYILVAFGELPAFLRLWVA 178 (265)
Q Consensus 101 ~i~~vig~gi~~~~~~~~~~~g~-~~~~i~~~~i~~l~~~~~a-~~~aEl~s~~P~~GG~y~~~~~~~g~~~gf~~gw~~ 178 (265)
-++.-.|+|=...|...-..+|. ...+.+++++.++..=+.+ ++.+ ..||.+.=..++.||+.|.+..-..
T Consensus 17 LFamFFGAGNLIFPp~LG~~aG~~~~~a~~GF~iT~VglPlLgiiava-------~~~g~~~~l~~rv~~~f~~~f~~~i 89 (439)
T PRK15433 17 TFALFVGAGNIIFPPMVGLQAGEHVWTAAFGFLITAVGLPVLTVVALA-------KVGGGVDSLSTPIGKVAGVLLATVC 89 (439)
T ss_pred HHHHHhcCcchhccHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHh-------hcCCCHHHHhhhcchHHHHHHHHHH
Confidence 34445667777888888777774 4555666666665433322 2222 2344555555667888887765544
Q ss_pred HHHHHhhHHHHHHHHHH---HHhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q psy9204 179 LLIMRPTTQAIVALTFA---QYAIKPFFPDSELPDRAVLLLAAACLCVLTAVNCMSVSWAMQVQTLFTVGKLVALFGIIA 255 (265)
Q Consensus 179 ~l~~~~~~~a~~~~~~~---~~l~~~~~~~~~~~~~~~~~i~~~~l~~~~~in~~gvk~~~~i~~v~~~~~i~~~~~~ii 255 (265)
.+...+ .-...+..+ +.-...+.|+ +.....+..+++..+..++.++.-|...++-++++.+.++.++++++
T Consensus 90 ~l~IGP--~~aiPRtaavsfEm~i~p~~~~---~~~~~~ifs~iFF~i~~~l~l~p~klvd~iGK~LTP~LL~~l~~lii 164 (439)
T PRK15433 90 YLAVGP--LFATPRTATVSFEVGIAPLTGD---SALPLFIYSLVYFAIVILVSLYPGKLLDTVGNFLAPLKIIALVILSV 164 (439)
T ss_pred HHHHhh--ccccCCccccchhheeeccCCc---ccHHHHHHHHHHHHHHHHHHcChhhHHHHhHHHHHHHHHHHHHHHHH
Confidence 431111 111111111 1111123332 12344677888888999999999999999999999999999999999
Q ss_pred HHHHHh
Q psy9204 256 AGIGYL 261 (265)
Q Consensus 256 ~g~~~~ 261 (265)
.++..-
T Consensus 165 ~~i~~p 170 (439)
T PRK15433 165 AAIVWP 170 (439)
T ss_pred HHHhcC
Confidence 998864
No 84
>COG1457 CodB Purine-cytosine permease and related proteins [Nucleotide transport and metabolism]
Probab=95.12 E-value=0.67 Score=43.49 Aligned_cols=116 Identities=12% Similarity=-0.014 Sum_probs=73.8
Q ss_pred HHHHHHHHHHHHHHHHhccccccCCchHHhHHHHhCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhcCCCCCCchH
Q psy9204 132 TVCGLLSTIGALCYAELGTCISRSGGDYAYILVAFGELPAFLRLWVALLIMRPTTQAIVALTFAQYAIKPFFPDSELPDR 211 (265)
Q Consensus 132 ~i~~l~~~~~a~~~aEl~s~~P~~GG~y~~~~~~~g~~~gf~~gw~~~l~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~ 211 (265)
+++.++-.+....+++++.+...+ +..-.|..||.+-+.+.....++ .+....+.+....++.... .+. .|
T Consensus 59 llG~llG~i~~A~~s~~Ga~~Glp--qmi~sR~~fG~~Gs~l~sll~~~-~~iGW~~v~~~l~~~a~~~--~~~--~~-- 129 (442)
T COG1457 59 LLGNLLGGIFMAYFSYQGARTGLP--QMILSRYPFGVKGSILPSLLNGI-TLIGWFGVNVILSGIAIGS--GTG--LP-- 129 (442)
T ss_pred HHHHHHHHHHHHHHHHhccccCCC--hheeecccccchhHHHHHHHHHH-HHhhHHHHHHHHhcccccc--CCC--Cc--
Confidence 444444444455556666554433 23445567888887777777666 5666677776666665332 122 22
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9204 212 AVLLLAAACLCVLTAVNCMSVSWAMQVQTLFTVGKLVALFGIIAAG 257 (265)
Q Consensus 212 ~~~~i~~~~l~~~~~in~~gvk~~~~i~~v~~~~~i~~~~~~ii~g 257 (265)
..+..++.-++.+...++|.|...+++++..+..++..+..+...
T Consensus 130 -~~~~ili~g~l~~l~~ifG~r~l~~l~~~a~~~~~~lf~~l~~~~ 174 (442)
T COG1457 130 -VWAGILIIGVLMTLVTIFGYRALHKLERIAVPLLLLLFLYLLALL 174 (442)
T ss_pred -HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 234455555677788889999999999999998888777665543
No 85
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)). They function by a Na+ or H+ symport mechanism and display 12 putative transmembrane helical spanners.; GO: 0015658 branched-chain aliphatic amino acid transmembrane transporter activity, 0015803 branched-chain aliphatic amino acid transport, 0016021 integral to membrane
Probab=95.06 E-value=0.79 Score=42.88 Aligned_cols=151 Identities=18% Similarity=0.237 Sum_probs=95.5
Q ss_pred hccccceeeecchHHHHHhccc-chHHHHHHHHHHHHHHHHH-HHHHHhccccccCCchHHhHHHHhCchhHHHHHHHHH
Q psy9204 102 VGCIIGSGIFVSPAGVLAETQS-VGLSIVIWTVCGLLSTIGA-LCYAELGTCISRSGGDYAYILVAFGELPAFLRLWVAL 179 (265)
Q Consensus 102 i~~vig~gi~~~~~~~~~~~g~-~~~~i~~~~i~~l~~~~~a-~~~aEl~s~~P~~GG~y~~~~~~~g~~~gf~~gw~~~ 179 (265)
++.-.|+|=...|..+-..+|+ ...+.+++++.++..=+.+ ++.+ ..||.+.=..++.||+.|.+..-...
T Consensus 13 FamFFGAGNLIFPp~lG~~aG~~~~~a~~GF~lTgV~lP~Lgvia~~-------~~~~~~~~l~~~v~~~f~~if~~~i~ 85 (427)
T PF05525_consen 13 FAMFFGAGNLIFPPFLGQQAGSNWWPAMIGFLLTGVGLPLLGVIAVA-------KSGGGIEDLASRVGPKFALIFTILIY 85 (427)
T ss_pred HHHHhCCccccchHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHh-------hcCCCHHHHhcccCcHHHHHHHHHHH
Confidence 3444567777788887777774 4455556666665433322 2222 34545555566778888887765544
Q ss_pred HHHHhh-HHH-HHHHHHHHHhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9204 180 LIMRPT-TQA-IVALTFAQYAIKPFFPDSELPDRAVLLLAAACLCVLTAVNCMSVSWAMQVQTLFTVGKLVALFGIIAAG 257 (265)
Q Consensus 180 l~~~~~-~~a-~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~l~~~~~in~~gvk~~~~i~~v~~~~~i~~~~~~ii~g 257 (265)
+...+. ..+ ..+.++ +.....+++. .+.+...+..+++..+...+.+...|...++-++++.+.++.++++++.+
T Consensus 86 l~IGP~~aiPRtaa~sf-e~~i~p~~~~--~~~~~~~ifs~iFF~i~~~l~~~p~kivd~iGk~LTP~LL~~l~ilii~~ 162 (427)
T PF05525_consen 86 LSIGPLFAIPRTAAVSF-EMGIAPFFPE--NSNISLLIFSIIFFAITYLLSLNPSKIVDRIGKFLTPILLILLAILIIKG 162 (427)
T ss_pred HHHHhcccCcchhhhhH-HHhhhccCCc--ccccchhhhhHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 411111 111 122222 2222233442 33455667788888899999999999999999999999999999999999
Q ss_pred HHHhh
Q psy9204 258 IGYLG 262 (265)
Q Consensus 258 ~~~~~ 262 (265)
+....
T Consensus 163 i~~p~ 167 (427)
T PF05525_consen 163 IFSPI 167 (427)
T ss_pred HHcCC
Confidence 88643
No 86
>PF02133 Transp_cyt_pur: Permease for cytosine/purines, uracil, thiamine, allantoin; InterPro: IPR001248 The Nucleobase Cation Symporter-1 (NCS1) family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.; GO: 0015205 nucleobase transmembrane transporter activity, 0015851 nucleobase transport, 0016020 membrane; PDB: 2JLN_A 2JLO_A.
Probab=94.98 E-value=0.47 Score=44.34 Aligned_cols=163 Identities=15% Similarity=0.002 Sum_probs=75.7
Q ss_pred cccccccchhhhHHhhhccccceeeecchHHHHHhcc-cchHHHHHHHHHHHHHHHHHHHHHHhccccccCCc-hHHhHH
Q psy9204 86 PVTGQRLVRLEGVSIIVGCIIGSGIFVSPAGVLAETQ-SVGLSIVIWTVCGLLSTIGALCYAELGTCISRSGG-DYAYIL 163 (265)
Q Consensus 86 ~~l~r~l~~~~~~~l~i~~vig~gi~~~~~~~~~~~g-~~~~~i~~~~i~~l~~~~~a~~~aEl~s~~P~~GG-~y~~~~ 163 (265)
|+-+|+-+.++...+=++..+....+..-.. ....| +...++++-+++.++..+.....+.++. +.|= +....|
T Consensus 3 P~~~R~~~~~~~~~iW~~~~~~~~~~~~G~~-~~~~gL~~~~ailai~~G~~l~~i~~~~~~~~G~---r~Gl~~~v~sR 78 (440)
T PF02133_consen 3 PESERTWSPWSLFWIWFGANISIATFVTGAL-GVALGLSFWQAILAILIGNLLGAILVALMGIIGP---RTGLPTMVLSR 78 (440)
T ss_dssp --GG--B-HHHHHHHHCHHH-SCHHH-HHHH-HHCCCS-HHHHHHHHHHHHHHHHHHHHHHTHHHH---CC---HHHHTT
T ss_pred chhcCCCcHHHHHHHHHHHHHHHHHHHHHHH-HHccCchHHHHHHHHHHHHHHHHHHHHHhccccc---ccCCCchhcch
Confidence 3445666677766654444332222222111 11222 2222333333433333333333333333 3332 345555
Q ss_pred HHhCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhcCCCCC----------CchHHHHHHHHHHHHHHHHHHhhhhh
Q psy9204 164 VAFGELPAFLRLWVALLIMRPTTQAIVALTFAQYAIKPFFPDSE----------LPDRAVLLLAAACLCVLTAVNCMSVS 233 (265)
Q Consensus 164 ~~~g~~~gf~~gw~~~l~~~~~~~a~~~~~~~~~l~~~~~~~~~----------~~~~~~~~i~~~~l~~~~~in~~gvk 233 (265)
..||.+-+.+......+ ......+.++...++.+........+ .......+..++.-++......+|.|
T Consensus 79 ~~FG~~Gs~l~~~l~~i-~~igW~av~~~~~g~al~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~ 157 (440)
T PF02133_consen 79 ASFGYRGSKLPSLLRAI-SAIGWFAVNTWLGGQALAALLGIIFGSFLWIGNAIIGIALPLWVCFFIFWLIQTLFAIYGMK 157 (440)
T ss_dssp TTS-TTTTHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHCCC-----HH-----------HHHHHHHHHHHHHHCTHHH
T ss_pred hccCcchHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhhhcCcchhhhhhhhcchhhHHHHHHHHHHHHHHHHhcCHH
Confidence 77888877777777666 55566677777666666643321111 00111222233344556667788999
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy9204 234 WAMQVQTLFTVGKLVALFGI 253 (265)
Q Consensus 234 ~~~~i~~v~~~~~i~~~~~~ 253 (265)
...+++.+...+..+..+..
T Consensus 158 ~l~~~~~~~~~~~~~~~~~~ 177 (440)
T PF02133_consen 158 ALRRLAVIAAPILLVVFIGM 177 (440)
T ss_dssp HHHHHHHCCHHHHHHHHHHH
T ss_pred HHHhHHhhhhHHHHhhhhhe
Confidence 99998888777655554333
No 87
>PTZ00206 amino acid transporter; Provisional
Probab=94.93 E-value=0.87 Score=43.16 Aligned_cols=101 Identities=8% Similarity=0.079 Sum_probs=59.6
Q ss_pred hhHHhhhccccceeeecchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhccccccCCchHHhHHHHhCchhHHHHH
Q psy9204 96 EGVSIIVGCIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTIGALCYAELGTCISRSGGDYAYILVAFGELPAFLRL 175 (265)
Q Consensus 96 ~~~~l~i~~vig~gi~~~~~~~~~~~g~~~~~i~~~~i~~l~~~~~a~~~aEl~s~~P~~GG~y~~~~~~~g~~~gf~~g 175 (265)
+...-...+++|+|+..+|... ...|-. ..++..++.++++......+.+.+.+ +.......-.++.+||+..++..
T Consensus 64 ~s~fnL~~~~iGaGILsLP~Af-~~~G~v-~giillil~a~ls~ys~~lL~~~~~~-~~~~sY~~la~~~~G~~g~~~v~ 140 (467)
T PTZ00206 64 ASAFNIASSTVGAGIVGLPSAA-NSSGLV-MAMIYLIIITAMTIFSIYALGVAADK-TNIRTYEGVARVLLGPWGSYYVA 140 (467)
T ss_pred HHHHHHHHHHHhHHHHHHHHHH-HHhhHH-HHHHHHHHHHHHHHHHHHHHHHHhcc-CCCCCHHHHHHHHhCHHHHHHHH
Confidence 3444455568889988888653 343422 22222344444444444555555544 33333444555778999999988
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHhhh
Q psy9204 176 WVALLIMRPTTQAIVALTFAQYAIK 200 (265)
Q Consensus 176 w~~~l~~~~~~~a~~~~~~~~~l~~ 200 (265)
....+ .....+.......++.+..
T Consensus 141 ~~~~~-~~~G~cv~YlIiigd~l~~ 164 (467)
T PTZ00206 141 ATRAF-HGFSACVAYVISVGDILSA 164 (467)
T ss_pred HHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 88777 5556666666667666654
No 88
>TIGR00813 sss transporter, SSS family. have different numbers of TMSs. A 13 TMS topology with a periplasmic N-terminus and a cytoplasmic C-terminus has been experimentally determined for the proline:Na+ symporter, PutP, of E. coli.
Probab=94.85 E-value=2.6 Score=38.96 Aligned_cols=160 Identities=11% Similarity=-0.038 Sum_probs=84.4
Q ss_pred cccchhhhHHhhhccccceeeecchHHHHHhcccchHHHHHHHHH-HHHHHHHHHHHHHhccccccCCchHHhHHHHhCc
Q psy9204 90 QRLVRLEGVSIIVGCIIGSGIFVSPAGVLAETQSVGLSIVIWTVC-GLLSTIGALCYAELGTCISRSGGDYAYILVAFGE 168 (265)
Q Consensus 90 r~l~~~~~~~l~i~~vig~gi~~~~~~~~~~~g~~~~~i~~~~i~-~l~~~~~a~~~aEl~s~~P~~GG~y~~~~~~~g~ 168 (265)
|+++++.......++..+...+..........|- ..+.+.++ .+...+.+..+.+.-++.+ .-....|.+++||+
T Consensus 3 r~~~~~~~~~s~~at~~s~~t~ig~~~~~y~~G~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~T~~e~l~~Ryg~ 78 (407)
T TIGR00813 3 RSLGGWVVAASLFASYISASQFLGLPGAIYAYGF---AIGFYELGALVLLIILGWLFVPIFINNG-AYTMPEYLEKRFGK 78 (407)
T ss_pred CCCCcHHHHHHHHHHHhhHHHHhcCcHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCchhHHHHHHhCc
Confidence 6677776655555554444333332232333241 11111122 2223334445555444433 44578999999998
Q ss_pred h-hHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Q psy9204 169 L-PAFLRLWVALLIMRPTTQAIVALTFAQYAIKPFFPDSELPDRAVLLLAAACLCVLTAVNCMSVSWAMQVQTLFTVGKL 247 (265)
Q Consensus 169 ~-~gf~~gw~~~l~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~l~~~~~in~~gvk~~~~i~~v~~~~~i 247 (265)
+ ...+.+....+ ......+......+..+.. +.+ . +.+. .+.+..+++..+...-|.|...+.+.+=.++.+
T Consensus 79 ~~~~~~~~~~~i~-~~~~~~~~q~~g~~~il~~-~~g-i--~~~~--~~ii~~~i~~~Yt~~GG~~av~~Td~iQ~~i~~ 151 (407)
T TIGR00813 79 RILRGLSVLSLIL-YIFLYMSVDLFSGALLIEL-ITG-L--DLYL--SLLLLGAITILYTVFGGLKAVVWTDTIQAVIMI 151 (407)
T ss_pred hHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH-HhC-c--hHHH--HHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHH
Confidence 4 55555555544 4445566666666666654 322 2 2222 222333345556667788888888777777776
Q ss_pred HHHHHHHHHHHHH
Q psy9204 248 VALFGIIAAGIGY 260 (265)
Q Consensus 248 ~~~~~~ii~g~~~ 260 (265)
+..+++.+..+.+
T Consensus 152 ~~~i~~~~~~~~~ 164 (407)
T TIGR00813 152 LGTFILPVFAFSE 164 (407)
T ss_pred HHHHHHHHHHHHH
Confidence 6666555554443
No 89
>KOG1303|consensus
Probab=94.80 E-value=0.75 Score=43.22 Aligned_cols=169 Identities=14% Similarity=0.051 Sum_probs=96.2
Q ss_pred cccccchhhhHHhhhccccceeeecchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhccccccCCc-----hHHhH
Q psy9204 88 TGQRLVRLEGVSIIVGCIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTIGALCYAELGTCISRSGG-----DYAYI 162 (265)
Q Consensus 88 l~r~l~~~~~~~l~i~~vig~gi~~~~~~~~~~~g~~~~~i~~~~i~~l~~~~~a~~~aEl~s~~P~~GG-----~y~~~ 162 (265)
.+|.-+++++..-.++.++|.|...+|-. ..+.| ....+...++.+++.+..+..+.++-...|...| .-...
T Consensus 34 ~~~~~s~~~a~~~~i~~~~G~gvLsLP~A-~~~lG-W~~G~~~Ll~~~iit~YT~~LL~~~~~~~~~~~~~r~~~Y~dl~ 111 (437)
T KOG1303|consen 34 PSRGGSWWQAAFHIINALIGAGVLSLPYA-LAQLG-WISGIVILLLFAIITLYTATLLSRCWEMHEAVPGKRRYRYPDLG 111 (437)
T ss_pred cCCCCcceehhhheehhhhhhhhhhhHHH-HHhCc-hHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccCCChHHHH
Confidence 36678999999999999999999988844 44434 2221223355555666666555555555555555 33445
Q ss_pred HHHhCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhc---CCCC-CCchHHHHHHHHHHHHHHHHHHhhhhhHHHHH
Q psy9204 163 LVAFGELPAFLRLWVALLIMRPTTQAIVALTFAQYAIKPF---FPDS-ELPDRAVLLLAAACLCVLTAVNCMSVSWAMQV 238 (265)
Q Consensus 163 ~~~~g~~~gf~~gw~~~l~~~~~~~a~~~~~~~~~l~~~~---~~~~-~~~~~~~~~i~~~~l~~~~~in~~gvk~~~~i 238 (265)
+++||++.-.+.++...+ .............++-+...+ ..+. ... ...+.+...++.+.... +-......++
T Consensus 112 ~~afG~~~~~iv~~~~~~-~~fg~~v~y~il~~~~L~~~~~~~~~~~~~l~-~~~f~iif~~i~~~~s~-lp~~~~l~~~ 188 (437)
T KOG1303|consen 112 QAAFGPKGRLLVSVLQYL-ELFGICVVYIILAGDNLKALFPIVSLNDNSLD-KQYFIIIFGLIVLPLSQ-LPNFHSLSYL 188 (437)
T ss_pred HHHhCCCceEeeeHHHHH-HHHHHHHHHHHHHHHHHHHHHHhcCCcccccc-ceehhhhHHHHHHHHHH-CCCcchhHHH
Confidence 589998776677776666 333344444444455554322 1111 111 12223333322222222 4555666777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q psy9204 239 QTLFTVGKLVALFGIIAAGIGYL 261 (265)
Q Consensus 239 ~~v~~~~~i~~~~~~ii~g~~~~ 261 (265)
..+..+..+......+++|+..-
T Consensus 189 S~~~avmS~~~a~~~~~~g~~~g 211 (437)
T KOG1303|consen 189 SLVGAVMSTLYAVILIVLGIADG 211 (437)
T ss_pred HHHHHHHHHHHHHHHHHHhhccc
Confidence 77777777777777777776654
No 90
>PRK15238 inner membrane transporter YjeM; Provisional
Probab=94.37 E-value=4.1 Score=38.80 Aligned_cols=31 Identities=23% Similarity=0.414 Sum_probs=27.9
Q ss_pred HHHHHHHhhhhccCCcccchhhhccccCCCC
Q psy9204 52 KISLALYSGLFAFGGWNYLNFVVDELQDPYN 82 (265)
Q Consensus 52 ~~~~a~~~~~~~y~Gw~~~n~v~~e~k~p~~ 82 (265)
++..++..+.|+|.||+......||.|||+|
T Consensus 212 ~~~~~~~~~~~~f~G~e~~~~~a~E~~~p~~ 242 (496)
T PRK15238 212 AVLSFVVFAIFAYGGIEAVGGLVDKTENPEK 242 (496)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHhccCCCc
Confidence 3556778899999999999999999999998
No 91
>COG1114 BrnQ Branched-chain amino acid permeases [Amino acid transport and metabolism]
Probab=94.30 E-value=1.6 Score=40.39 Aligned_cols=154 Identities=16% Similarity=0.146 Sum_probs=93.8
Q ss_pred hhhccccceeeecchHHHHHhcc-cchHHHHHHHHHHHHHHHHHHHHHHhccccccCCchHHhHHHHhCchhHHHHHHHH
Q psy9204 100 IIVGCIIGSGIFVSPAGVLAETQ-SVGLSIVIWTVCGLLSTIGALCYAELGTCISRSGGDYAYILVAFGELPAFLRLWVA 178 (265)
Q Consensus 100 l~i~~vig~gi~~~~~~~~~~~g-~~~~~i~~~~i~~l~~~~~a~~~aEl~s~~P~~GG~y~~~~~~~g~~~gf~~gw~~ 178 (265)
+.++.-.|+|=...|...-..+| ..+.+.+++++.++..=+....-. -..||.+.=..+..||+.|.+..-..
T Consensus 13 mLFalFFGAGNlIFPP~LG~~aG~~~~~A~lGFllTgVglPlLgiIa~------a~~g~~~~~l~~~i~~~fg~~f~~~i 86 (431)
T COG1114 13 MLFALFFGAGNLIFPPMLGLHAGEHVWPAILGFLLTGVGLPLLGIIAV------ALYGGGVESLATRIGPWFGVLFAIAI 86 (431)
T ss_pred HHHHHHhcCCCccCChhhhhhcCccHHHHHHHHHHHHhhHHHHHHHHh------hccCCCHHHHhhhccchHHHHHHHHH
Confidence 33444556676777777777767 456666777766654322222211 14555556666777899887766554
Q ss_pred HHHHHhhH-HH-HHHHHHHHHhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy9204 179 LLIMRPTT-QA-IVALTFAQYAIKPFFPDSELPDRAVLLLAAACLCVLTAVNCMSVSWAMQVQTLFTVGKLVALFGIIAA 256 (265)
Q Consensus 179 ~l~~~~~~-~a-~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~l~~~~~in~~gvk~~~~i~~v~~~~~i~~~~~~ii~ 256 (265)
.+..-+.. .. ..+.++-.-+. .+.++. +.+...+..+++..+...+.+...|...|+-++++.++++.++.+++.
T Consensus 87 yLsIGPffAiPRt~~vsfe~~i~-p~~~~~--~~~~l~ifs~ifF~ia~~~sl~psklid~vGk~LTPilLv~l~il~i~ 163 (431)
T COG1114 87 YLSIGPFFAIPRTGAVSFEVGIS-PLLGDS--SLPSLFIFSVIFFAIAYLFSLNPSKLIDRVGKFLTPILLVLLLILVIA 163 (431)
T ss_pred HHHhcccccCCcccchhHHHhhh-cccCCC--cchHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 44111110 00 11111111111 122221 344566777888888999999999999999999999999999999888
Q ss_pred HHHHhh
Q psy9204 257 GIGYLG 262 (265)
Q Consensus 257 g~~~~~ 262 (265)
++....
T Consensus 164 ~~~~p~ 169 (431)
T COG1114 164 AIIPPA 169 (431)
T ss_pred HHhCCC
Confidence 776543
No 92
>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter. Members of this protein family are putative putative glutamate/gamma-aminobutyrate antiporters. Each member of the seed alignment is found adjacent to a glutamate decarboxylase, which converts glutamate (Glu) to gamma-aminobutyrate (GABA). However, the majority belong to genome contexts with a glutaminase (converts Gln to Glu) as well as the decarboxylase that converts Glu to GABA. The specificity of the transporter remains uncertain.
Probab=94.21 E-value=5.1 Score=37.84 Aligned_cols=24 Identities=17% Similarity=0.324 Sum_probs=22.3
Q ss_pred hhhhccCCcccchhhhccccCCCC
Q psy9204 59 SGLFAFGGWNYLNFVVDELQDPYN 82 (265)
Q Consensus 59 ~~~~~y~Gw~~~n~v~~e~k~p~~ 82 (265)
..+|+|.||+......||.|||+|
T Consensus 202 ~~~~af~G~e~~~~~a~E~knP~r 225 (474)
T TIGR03813 202 SIFLFYAGMEMNAVHVKDVDNPDK 225 (474)
T ss_pred HHHHHHhchhHhHHHHHhccCccc
Confidence 357899999999999999999999
No 93
>TIGR00908 2A0305 ethanolamine permease. The three genes used as the seed for this model (from Burkholderia pseudomallei, Pseudomonas aeruginosa and Clostridium acetobutylicum are all adjacent to genes for the catabolism of ethanolamine. Most if not all of the hits to this model have a similar arrangement of genes. This group is a member of the Amino Acid-Polyamine-Organocation (APC) Superfamily.
Probab=94.05 E-value=5 Score=37.43 Aligned_cols=33 Identities=12% Similarity=0.168 Sum_probs=29.9
Q ss_pred hhHHHHHHHhhhhccCCcccchhhhccccCCCC
Q psy9204 50 ITKISLALYSGLFAFGGWNYLNFVVDELQDPYN 82 (265)
Q Consensus 50 ~~~~~~a~~~~~~~y~Gw~~~n~v~~e~k~p~~ 82 (265)
..++..++..+.|+|.||+....+.||.|||+|
T Consensus 190 ~~~~~~~~~~~~~af~G~e~~~~~aeE~k~P~r 222 (442)
T TIGR00908 190 YVGVFAAIPFAIWFFLAVEGVAMAAEETKNPKR 222 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccc
Confidence 456778888899999999999999999999998
No 94
>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A ....
Probab=93.93 E-value=5 Score=37.02 Aligned_cols=28 Identities=18% Similarity=0.394 Sum_probs=25.2
Q ss_pred HHHHHHHhhhhccCCcccchhhhccccC
Q psy9204 52 KISLALYSGLFAFGGWNYLNFVVDELQD 79 (265)
Q Consensus 52 ~~~~a~~~~~~~y~Gw~~~n~v~~e~k~ 79 (265)
.+..++..++|+|.||+..+.+.||.||
T Consensus 189 ~~~~~~~~~~~~~~G~e~~~~~~~E~k~ 216 (426)
T PF13520_consen 189 GFLAGFSVAFFAFSGFEAIASLAEENKN 216 (426)
T ss_dssp HHHHHHHHHGGGGTTTTHHHHGGGGSSS
T ss_pred chhhHHHHHHhhcccccccccccccccc
Confidence 4678899999999999999999999666
No 95
>KOG1304|consensus
Probab=93.93 E-value=3.4 Score=38.86 Aligned_cols=159 Identities=15% Similarity=0.069 Sum_probs=86.1
Q ss_pred ccchhhhHHhhhccccceeeecchHHHHHhcccchHHHHHHHHHHHHHHH---HHHHHHHhccccccC------------
Q psy9204 91 RLVRLEGVSIIVGCIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTI---GALCYAELGTCISRS------------ 155 (265)
Q Consensus 91 ~l~~~~~~~l~i~~vig~gi~~~~~~~~~~~g~~~~~i~~~~i~~l~~~~---~a~~~aEl~s~~P~~------------ 155 (265)
..+..+.+.=-.-.++|+|.+..|.. ...+|-....+...+++.+...| ..-|--+++++.-++
T Consensus 46 ~~s~~~tl~hl~k~~iGtG~l~lP~A-Fk~sG~~~G~~~~~~i~~l~~yc~~~LVk~~~~L~~~~~~~~~~y~~~~~~a~ 124 (449)
T KOG1304|consen 46 PTSATQTLIHLLKGSIGTGILSLPLA-FKNSGLVMGLLLTVFIGFLCTYCMHLLVKCSHKLCKRFRGPSLDYAETAESAM 124 (449)
T ss_pred CCchHHHHHHHHHhhhccccccChHH-HHhcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCccccHHHHHHHHH
Confidence 45555656555666788999888865 44445322222223444443333 455666676664221
Q ss_pred CchHHhHHHHhCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHh-hhhhH
Q psy9204 156 GGDYAYILVAFGELPAFLRLWVALLIMRPTTQAIVALTFAQYAIKPFFPDSELPDRAVLLLAAACLCVLTAVNC-MSVSW 234 (265)
Q Consensus 156 GG~y~~~~~~~g~~~gf~~gw~~~l~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~l~~~~~in~-~gvk~ 234 (265)
.+.+.| .|.+||+..+++.....+ .+...+.......++-+++.+. ....+.+.......+.+.....+|. +..|.
T Consensus 125 ~~~~~~-~r~~g~~~r~~V~~~L~i-~QlGfc~vY~VFva~nl~~i~~-~~~~~~~s~~~~i~~~~~~~lll~~Ir~Lk~ 201 (449)
T KOG1304|consen 125 EGGPGW-LRKYGPAARFVVNFFLVI-TQLGFCCVYLVFVATNLKQIVD-EHSPGVLSVRLYILIQLPPLLLLNLIRNLKI 201 (449)
T ss_pred cCCcHH-HHhhcHHHHHHHHHHHHH-HHhchhhEEeeeHHhhHHHHHh-ccCCCCccHHHHHHHHHHHHHHHHHHHhhHH
Confidence 222345 688999999988877777 6666666666666777765443 1222333344444444444444443 33455
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy9204 235 AMQVQTLFTVGKLVALFGI 253 (265)
Q Consensus 235 ~~~i~~v~~~~~i~~~~~~ 253 (265)
..-+..+.-++.++.+.++
T Consensus 202 Lsp~Sl~Anv~~~~g~~ii 220 (449)
T KOG1304|consen 202 LSPFSLFANVFILVGLAII 220 (449)
T ss_pred hhHHHHHHHHHHHHHHHHH
Confidence 5444444444444444433
No 96
>COG1953 FUI1 Cytosine/uracil/thiamine/allantoin permeases [Nucleotide transport and metabolism / Coenzyme metabolism]
Probab=93.48 E-value=7.2 Score=37.11 Aligned_cols=182 Identities=11% Similarity=0.006 Sum_probs=92.9
Q ss_pred CCCCCCccccccccchhhhHHhhhccccceeeecchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhccccccCCch
Q psy9204 79 DPYNLVLPVTGQRLVRLEGVSIIVGCIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTIGALCYAELGTCISRSGGD 158 (265)
Q Consensus 79 ~p~~~~~~~l~r~l~~~~~~~l~i~~vig~gi~~~~~~~~~~~g~~~~~i~~~~i~~l~~~~~a~~~aEl~s~~P~~GG~ 158 (265)
|++-.|.++-+|.-+.++...+=.+.+.....+...........++.-.+++.+++-++.......-+..++++... .
T Consensus 28 N~DL~P~~~~~rtWg~~~~~~~W~~~~~nv~~~~~aa~~~~lGLS~~qallai~vG~~iv~i~m~Lng~~G~~~gIp--F 105 (497)
T COG1953 28 NEDLAPTPAEQRTWGWWNYFALWLGMVHNVPTYMLAAGLFELGLSPWQALLAILVGNLIVAIFMVLNGHAGSKYGIP--F 105 (497)
T ss_pred CCCCCCCccccCcchHHHHHHHHHHhhccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhccCcccccCCC--c
Confidence 44433456788999999988877766655555555545444423444344333333333333333223323322111 1
Q ss_pred HHhHHHHhCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhh---hhcCCCCC-----C----chHHHHHHHHHHHHHHHH
Q psy9204 159 YAYILVAFGELPAFLRLWVALLIMRPTTQAIVALTFAQYAI---KPFFPDSE-----L----PDRAVLLLAAACLCVLTA 226 (265)
Q Consensus 159 y~~~~~~~g~~~gf~~gw~~~l~~~~~~~a~~~~~~~~~l~---~~~~~~~~-----~----~~~~~~~i~~~~l~~~~~ 226 (265)
-...+..||-+-+-+-.-...+ .....-.+.+...+..+. ..+.|... . -+..+.+-.+++-.+...
T Consensus 106 pv~~RaSFGi~Ga~~p~l~R~i-~A~~WyGvqty~Gg~av~llL~~i~~~~~~~~~~~~~lg~tt~~~i~F~ifW~l~~l 184 (497)
T COG1953 106 PVLSRASFGIYGANFPALIRAI-VAIVWYGVQTYAGGLAVNLLLGSIFPSLLIPNTLSPLLGLTTLELICFFIFWVLQLL 184 (497)
T ss_pred hHHHHHHHhhhhhhHHHHHHHH-HHHHHHHHHHHHhHHHHHHHHHHhccccccCCccccccCCcHHHHHHHHHHHHHHHH
Confidence 2344555665444433333333 122222333333333222 22233211 1 012233333334444445
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy9204 227 VNCMSVSWAMQVQTLFTVGKLVALFGIIAAGIGYLGI 263 (265)
Q Consensus 227 in~~gvk~~~~i~~v~~~~~i~~~~~~ii~g~~~~~~ 263 (265)
+-.+|.+..+|++.....+..+..+.+.+-...+..+
T Consensus 185 ~~~~g~~~Ir~~~~~a~p~~~~~~~gl~Iw~~~~a~g 221 (497)
T COG1953 185 VLFKGMESIRKFETWAGPLVYIAMLGLAIWALVKAGG 221 (497)
T ss_pred HHhcCHHHHHHHHHHhchHHHHHHHHHHHHHHHhcCC
Confidence 6678999999999999999999988888877766544
No 97
>KOG1289|consensus
Probab=93.38 E-value=4.3 Score=38.96 Aligned_cols=88 Identities=14% Similarity=0.253 Sum_probs=56.5
Q ss_pred HHHHHHHhhhhccCCcccchhhhccccCCCCCCccccccccchhhhHHhhhccccceeeecchHHHHHhcccchHHHHHH
Q psy9204 52 KISLALYSGLFAFGGWNYLNFVVDELQDPYNLVLPVTGQRLVRLEGVSIIVGCIIGSGIFVSPAGVLAETQSVGLSIVIW 131 (265)
Q Consensus 52 ~~~~a~~~~~~~y~Gw~~~n~v~~e~k~p~~~~~~~l~r~l~~~~~~~l~i~~vig~gi~~~~~~~~~~~g~~~~~i~~~ 131 (265)
++-+++...-|...|.+....+.||.||+++ ..| ..+..+ ..+++
T Consensus 253 afil~f~~~~wt~sGyDa~~H~aEE~~nAsk-~aP----------------------------rgIi~s------~~i~~ 297 (550)
T KOG1289|consen 253 AFILGFFNPAWTMSGYDAAAHMAEETKNASK-AAP----------------------------RGIISS------IAIGF 297 (550)
T ss_pred HHHHhhccceeEEeccCchHHHHHHhcchhh-hcc----------------------------HHHHHH------HHHHH
Confidence 5667888999999999999999999999998 222 111111 12334
Q ss_pred HHHHHHHHHHHHHHH-HhccccccCCch--HHhHHHHhCchhHHHH
Q psy9204 132 TVCGLLSTIGALCYA-ELGTCISRSGGD--YAYILVAFGELPAFLR 174 (265)
Q Consensus 132 ~i~~l~~~~~a~~~a-El~s~~P~~GG~--y~~~~~~~g~~~gf~~ 174 (265)
+++.++.+++++++. .+.+.+-+..|+ -.+.....||+.+...
T Consensus 298 i~gw~~~I~i~~~i~~D~~~v~ns~~g~p~~~i~~~~lg~k~~v~~ 343 (550)
T KOG1289|consen 298 ILGWIIIIGIAYTIPDDLDAVLNSSLGQPIVQIYYQALGKKGAVFL 343 (550)
T ss_pred HHHHHHHHHHHHhccchHHHHhcCCCCChHHHHHHHhcCCCceEeh
Confidence 555556666677766 555555444333 3445577888776333
No 98
>TIGR02119 panF sodium/pantothenate symporter. Pantothenate (vitamin B5) is a precursor of coenzyme A and is made from aspartate and 2-oxoisovalerate in most bacteria with completed genome sequences. However, some pathogens must import pantothenate. This model describes PanF, a sodium/pantothenate symporter, from a larger family of Sodium/substrate symporters (pfam00474). Several species that have this transporter appear to lack all enzymes of pantothenate biosynthesis, namely Haemophilus influenzae, Pasteurella multocida, Fusobacterium nucleatum, and Borrelia burgdorferi.
Probab=93.11 E-value=7.8 Score=36.60 Aligned_cols=162 Identities=9% Similarity=-0.036 Sum_probs=79.4
Q ss_pred cccccchhhhHHhhhccccceeeecchHHHHHhcccchHHHHHH---HHHHHHHHHHHHHHHHhccccccCCchHHhHHH
Q psy9204 88 TGQRLVRLEGVSIIVGCIIGSGIFVSPAGVLAETQSVGLSIVIW---TVCGLLSTIGALCYAELGTCISRSGGDYAYILV 164 (265)
Q Consensus 88 l~r~l~~~~~~~l~i~~vig~gi~~~~~~~~~~~g~~~~~i~~~---~i~~l~~~~~a~~~aEl~s~~P~~GG~y~~~~~ 164 (265)
-.|+++.+.......++.++...+..........|-. .....+ ..+.++....+.-+.+..++. +.-....|.++
T Consensus 38 agr~l~~~~~~~s~~at~~s~~t~~g~~g~~y~~G~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~T~~e~l~~ 115 (471)
T TIGR02119 38 GGRSMGGFVLAMTLVATYGSASSFIGGPGIAYNYGLG-WVLLAMIQVPTGYFVLGVLGKKFAIISRKY-NAITINDVLKA 115 (471)
T ss_pred eCCcccHHHHHHHHHHHHhhHHHHcCcHHHHHHhhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCccHHHHHHH
Confidence 4577888876666666655544443333323332311 110100 111111111122233333333 34457899999
Q ss_pred HhCch-hHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Q psy9204 165 AFGEL-PAFLRLWVALLIMRPTTQAIVALTFAQYAIKPFFPDSELPDRAVLLLAAACLCVLTAVNCMSVSWAMQVQTLFT 243 (265)
Q Consensus 165 ~~g~~-~gf~~gw~~~l~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~l~~~~~in~~gvk~~~~i~~v~~ 243 (265)
+||++ ...+.+-...+ .............+..+.. +++ .|.+.. +.+..++.+.+....|.|...+.+.+-.
T Consensus 116 Ryg~~~~~~~~~i~~i~-~~~~~~~~ql~g~g~~l~~-~~g---i~~~~~--iii~~~iv~iYt~~GG~~av~~td~iQ~ 188 (471)
T TIGR02119 116 RYNNKFLVWLSSISLLV-FFFSAMVAQFIGGARLIES-LTG---LSYLTA--LFIFSSSVLIYTTFGGFRAVALTDAIQG 188 (471)
T ss_pred HcCCCchHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH-HHC---CCHHHH--HHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 99954 34444443333 3333334444444555543 222 232222 2233334566667778888888888777
Q ss_pred HHHHHHHHHHHHHHH
Q psy9204 244 VGKLVALFGIIAAGI 258 (265)
Q Consensus 244 ~~~i~~~~~~ii~g~ 258 (265)
++.++..+++.+..+
T Consensus 189 ~v~~~~~~~~~~~~l 203 (471)
T TIGR02119 189 IVMFTGTTILLIAVI 203 (471)
T ss_pred HHHHHHHHHHHHHHH
Confidence 777766665554443
No 99
>COG0591 PutP Na+/proline symporter [Amino acid transport and metabolism / General function prediction only]
Probab=93.04 E-value=8.6 Score=36.75 Aligned_cols=159 Identities=14% Similarity=-0.001 Sum_probs=83.0
Q ss_pred cccccchhhhHHhhhcc-ccc-eeeecchHHHHHhcccchHHHHHH--HHHHHHHHHHHHHHHHhccccccCCchHHhHH
Q psy9204 88 TGQRLVRLEGVSIIVGC-IIG-SGIFVSPAGVLAETQSVGLSIVIW--TVCGLLSTIGALCYAELGTCISRSGGDYAYIL 163 (265)
Q Consensus 88 l~r~l~~~~~~~l~i~~-vig-~gi~~~~~~~~~~~g~~~~~i~~~--~i~~l~~~~~a~~~aEl~s~~P~~GG~y~~~~ 163 (265)
-.|+++.+ ..+++.+. ..+ ......|+..+.. |......... +...+.....+--..+++ +-+..-....|.+
T Consensus 36 ~gR~lg~~-v~~ls~~as~~s~~t~lG~~g~ay~~-G~~~~~~~~~~~~~~~~~~~~~~~rl~~~~-~~~~~~T~~d~l~ 112 (493)
T COG0591 36 GGRSLGPF-VYALSAAASDTSGWTFLGLPGLAYAS-GLSGLWIAIGLLIGAFLLWLLFAPRLRRLA-KARGATTIPDFLE 112 (493)
T ss_pred cCCcCChH-HHHHHHHHHHHHHHHHhcchHHHHhc-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cccCCccHHHHHH
Confidence 35677777 55554444 333 4444556555544 4221111111 122223333455556666 5556666899999
Q ss_pred HHhC-chhHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Q psy9204 164 VAFG-ELPAFLRLWVALLIMRPTTQAIVALTFAQYAIKPFFPDSELPDRAVLLLAAACLCVLTAVNCMSVSWAMQVQTLF 242 (265)
Q Consensus 164 ~~~g-~~~gf~~gw~~~l~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~l~~~~~in~~gvk~~~~i~~v~ 242 (265)
++|| +....+.+....+ ......+......+..+.. .++ .+ . . ....+....+..+.-..|.|...+...+=
T Consensus 113 ~Rf~s~~lr~l~ali~iv-~~i~yia~ql~~~~~~~~~-~~g-i~-~-~--~~~~~~~~~v~~Yt~~gG~~av~~Td~iq 185 (493)
T COG0591 113 ARFGSKILRILSALIIIV-FFIPYIALQLVAGGLLLSL-LFG-IS-Y-V--TGILIGALIVALYTFLGGLRAVVWTDFIQ 185 (493)
T ss_pred HHcCChHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhh-hcC-CC-H-H--HHHHHHHHHHHHHHHHcChhHHHHHHHHH
Confidence 9999 8888888776666 6666677777777666643 332 22 1 1 12222333444444455555554444444
Q ss_pred HHHHHHHHHHHHHH
Q psy9204 243 TVGKLVALFGIIAA 256 (265)
Q Consensus 243 ~~~~i~~~~~~ii~ 256 (265)
..+..+.+..+.+.
T Consensus 186 g~im~i~~~~~~i~ 199 (493)
T COG0591 186 GLIMLIALIVIPIL 199 (493)
T ss_pred HHHHHHHHHHHHHH
Confidence 44444444443333
No 100
>PRK09395 actP acetate permease; Provisional
Probab=92.83 E-value=9.8 Score=36.86 Aligned_cols=95 Identities=9% Similarity=-0.123 Sum_probs=53.1
Q ss_pred hHHhHHHHhC-chhHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHhhhhhHHH
Q psy9204 158 DYAYILVAFG-ELPAFLRLWVALLIMRPTTQAIVALTFAQYAIKPFFPDSELPDRAVLLLAAACLCVLTAVNCMSVSWAM 236 (265)
Q Consensus 158 ~y~~~~~~~g-~~~gf~~gw~~~l~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~l~~~~~in~~gvk~~~ 236 (265)
.+.|.+++|| |....+.+....+ .............+..+.. +.+ .+.+. .+.+..++...+...-|.|...
T Consensus 134 ~~d~l~~Rygs~~~r~l~av~~iv-~~~~yl~~q~~g~g~il~~-~~g---i~~~~--~ili~~~i~~iYt~~GGm~av~ 206 (551)
T PRK09395 134 FADVASYRLKQGPIRTLSACGSLV-VVALYLIAQMVGAGKLIQL-LFG---LNYHV--AVVLVGVLMMVYVLFGGMLATT 206 (551)
T ss_pred HHHHHHHHcCCchHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH-HhC---CCHHH--HHHHHHHHHHHHHhhcchHHHH
Confidence 5667779998 4577776665554 3334444445555554543 222 22222 2333334455566667888877
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy9204 237 QVQTLFTVGKLVALFGIIAAGIG 259 (265)
Q Consensus 237 ~i~~v~~~~~i~~~~~~ii~g~~ 259 (265)
+.+.+=.++.++..+++.+..+.
T Consensus 207 ~TD~iQ~iim~~g~ii~~~~~~~ 229 (551)
T PRK09395 207 WVQIIKAVLLLSGATFMAFMVMK 229 (551)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777666665555444433
No 101
>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism]
Probab=92.69 E-value=8.4 Score=35.76 Aligned_cols=35 Identities=23% Similarity=0.435 Sum_probs=31.8
Q ss_pred CChhHHHHHHHhhhhccCCcccchhhhccccCCCC
Q psy9204 48 YDITKISLALYSGLFAFGGWNYLNFVVDELQDPYN 82 (265)
Q Consensus 48 ~~~~~~~~a~~~~~~~y~Gw~~~n~v~~e~k~p~~ 82 (265)
...+.+..++..+.|+|.||+......||.|||+|
T Consensus 198 ~~~~~~~~~~~~~~~~f~G~e~~~~~a~E~knp~r 232 (466)
T COG0531 198 GSFGGILAAILLAFFAFTGFEAIATLAEEVKNPKR 232 (466)
T ss_pred chHHHHHHHHHHHHHHhhcHHHHHHHHHHhcCccc
Confidence 34567888999999999999999999999999988
No 102
>TIGR03648 Na_symport_lg probable sodium:solute symporter, VC_2705 subfamily. This family belongs to a larger family of transporters of the sodium:solute symporter superfamily, TC 2.A.21. Members of this strictly bacterial protein subfamily are found almost invariably immediately downstream from a member of family TIGR03647. Occasionally, the two genes are fused.
Probab=92.57 E-value=9.9 Score=36.83 Aligned_cols=154 Identities=14% Similarity=0.026 Sum_probs=74.4
Q ss_pred cccccchhhhHHhhhccccceeeecchHHHHHhcccch-HHHHHHHHHHHHHHHHHHHHHHhccccccCCchHHhHHHHh
Q psy9204 88 TGQRLVRLEGVSIIVGCIIGSGIFVSPAGVLAETQSVG-LSIVIWTVCGLLSTIGALCYAELGTCISRSGGDYAYILVAF 166 (265)
Q Consensus 88 l~r~l~~~~~~~l~i~~vig~gi~~~~~~~~~~~g~~~-~~i~~~~i~~l~~~~~a~~~aEl~s~~P~~GG~y~~~~~~~ 166 (265)
-.|+++.+..-....++..+...+..........|-.+ ...++|.++. .+.++.+++.-++... -..+.|.+++|
T Consensus 30 aGr~l~~~~~~~s~~At~~Sa~tflG~~g~~y~~G~~~~~~~~g~~~~~---~~~~~~~~p~~rr~~~-~T~~e~l~~Rf 105 (552)
T TIGR03648 30 AGRGVPPVANGMATAADWMSAASFISMAGLIAFLGYDGLAYLMGWTGGY---VLLALLLAPYLRKFGK-YTVPDFIGDRY 105 (552)
T ss_pred eCCCCchHHHHHHHHHHHHhHHHHHHHHHHHHHhChHHHHHHHHHHHHH---HHHHHHHHHHHHHCCC-ccHHHHHHHHh
Confidence 35678887755555555444433333222222223211 1112233322 2233445555454433 35789999999
Q ss_pred Cch-hHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Q psy9204 167 GEL-PAFLRLWVALLIMRPTTQAIVALTFAQYAIKPFFPDSELPDRAVLLLAAACLCVLTAVNCMSVSWAMQVQTLFTVG 245 (265)
Q Consensus 167 g~~-~gf~~gw~~~l~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~l~~~~~in~~gvk~~~~i~~v~~~~ 245 (265)
+++ ...+.+....+ ......+......+..+.. +.+ .+.+...++. .++.+.+...-|.|...+.+.+=.++
T Consensus 106 ~s~~~~~~~~i~~~~-~~~~~l~~ql~~~~~~l~~-~~g---i~~~~~iii~--~~i~~iYt~~GG~~aV~~TD~iQ~ii 178 (552)
T TIGR03648 106 YSNTARLVAVICAIF-ISFTYVAGQMRGVGVVFSR-FLE---VDFETGVFIG--MAIVFFYAVLGGMKGVTWTQVAQYIV 178 (552)
T ss_pred CCCceehhHHHHHHH-HHHHHHHHHHHHHHHHHHH-HHC---CCHHHHHHHH--HHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 854 56666555444 3333344444444444443 222 2222222222 23445555566777777666666655
Q ss_pred HHHHHHH
Q psy9204 246 KLVALFG 252 (265)
Q Consensus 246 ~i~~~~~ 252 (265)
.++..++
T Consensus 179 m~ig~i~ 185 (552)
T TIGR03648 179 LIVAYLV 185 (552)
T ss_pred HHHHHHH
Confidence 5554443
No 103
>COG3949 Uncharacterized membrane protein [Function unknown]
Probab=92.56 E-value=3.5 Score=37.17 Aligned_cols=142 Identities=15% Similarity=0.113 Sum_probs=88.5
Q ss_pred hhhccccceeeecchHHHHHhcccc-hHHHHHHHHHHHHHHHHHHHHHHhccccccCCchHHhHHHHhCchhHHHHHHHH
Q psy9204 100 IIVGCIIGSGIFVSPAGVLAETQSV-GLSIVIWTVCGLLSTIGALCYAELGTCISRSGGDYAYILVAFGELPAFLRLWVA 178 (265)
Q Consensus 100 l~i~~vig~gi~~~~~~~~~~~g~~-~~~i~~~~i~~l~~~~~a~~~aEl~s~~P~~GG~y~~~~~~~g~~~gf~~gw~~ 178 (265)
..+++++|.| |.+-+++.+-.+.- ..+.++-++++++....+....+++.++.. ...-.+.++.+||+++.+.--..
T Consensus 11 ~~ig~~vGAG-fAsGqEi~QFF~~~G~~s~~gIivs~vlf~~~g~vim~ig~~f~a-~~y~~~~~~v~~~~~~ki~d~~i 88 (349)
T COG3949 11 AFIGTVVGAG-FASGQEIMQFFGKYGVYSILGIILSTVLFTLSGAVIMTIGKKFNA-TSYREILKYVSGPKFAKIIDIII 88 (349)
T ss_pred HHHHHhhccc-ccchHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcc-cchHHHHHHHhhHHHHHHHHHHH
Confidence 3455666655 45556777666642 224555678888888899999999998854 44778899999999998877655
Q ss_pred HHHHHhhHHHHHHHHHHH-HhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHhhh-hhHHHHHHHHHHHHHHHHHHH
Q psy9204 179 LLIMRPTTQAIVALTFAQ-YAIKPFFPDSELPDRAVLLLAAACLCVLTAVNCMS-VSWAMQVQTLFTVGKLVALFG 252 (265)
Q Consensus 179 ~l~~~~~~~a~~~~~~~~-~l~~~~~~~~~~~~~~~~~i~~~~l~~~~~in~~g-vk~~~~i~~v~~~~~i~~~~~ 252 (265)
.+ . ....+.+..+.+. .+.+. ++.|.|... ++++....+...++ +|..-+++.+.+.+.++.+.+
T Consensus 89 if-~-lf~~~vVM~AGags~~~e~----~~lP~wiGa---li~i~~v~i~lfl~~vegi~tvn~iI~P~LIi~l~~ 155 (349)
T COG3949 89 IF-F-LFSTAVVMLAGAGSLLEEM----FGLPYWIGA---LIIILLVLILLFLGRVEGIITVNGIITPFLIIILVL 155 (349)
T ss_pred HH-H-HHHHHHHHhccchhHHHHH----hCccHHHHH---HHHHHHHHHHHHHhcccceeeeheeHHHHHHHHHHH
Confidence 55 2 3334444333333 44432 334544432 33334444444455 777777777777777666433
No 104
>PRK12488 acetate permease; Provisional
Probab=92.47 E-value=11 Score=36.61 Aligned_cols=163 Identities=10% Similarity=-0.023 Sum_probs=82.6
Q ss_pred cccccchhhhHHhhhccccceeeecchHHHHHhcccchHHHHHHHHHHHHHHH-HHHHHHHhccccccCCchHHhHHHHh
Q psy9204 88 TGQRLVRLEGVSIIVGCIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTI-GALCYAELGTCISRSGGDYAYILVAF 166 (265)
Q Consensus 88 l~r~l~~~~~~~l~i~~vig~gi~~~~~~~~~~~g~~~~~i~~~~i~~l~~~~-~a~~~aEl~s~~P~~GG~y~~~~~~~ 166 (265)
-.|+++.+..-....++..+...+..........|-.+ +.+.++..+..+ ..+.+++--.+.. .-..+.|.+++|
T Consensus 65 aGR~l~~~~~~~si~at~~Sa~sflG~~G~~y~~G~~~---~~~~~g~~~g~~~~~~~~a~~lr~~g-~~T~~d~l~~Rf 140 (549)
T PRK12488 65 AGGGLTGMQNGLAIAGDMISAASFLGISAMMFMNGYDG---LLYALGVLAGWPIILFLIAERLRNLG-KYTFADVVSYRL 140 (549)
T ss_pred eCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhChhH---HHHHHHHHHHHHHHHHHHHHHHHHCC-CcchHHHHHHHc
Confidence 35678888776665665555444443333333334221 111222222221 2222333222222 234677888899
Q ss_pred C-chhHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Q psy9204 167 G-ELPAFLRLWVALLIMRPTTQAIVALTFAQYAIKPFFPDSELPDRAVLLLAAACLCVLTAVNCMSVSWAMQVQTLFTVG 245 (265)
Q Consensus 167 g-~~~gf~~gw~~~l~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~l~~~~~in~~gvk~~~~i~~v~~~~ 245 (265)
+ |....+.+....+ .............+..+.. ++ + .+.+.. +.+..++...+.-.-|.|...+.+.+=.++
T Consensus 141 ~s~~~r~laai~~i~-~~~~yl~~q~~g~g~il~~-l~-g--i~~~~~--iii~~~i~~~Yt~~GGm~av~~td~iQ~~i 213 (549)
T PRK12488 141 AQGPVRLTAAFGTLT-VVLMYLVAQMVGAGKLIEL-LF-G--ISYLYA--VVIVGALMVLYVTFGGMLATTWVQIIKAVL 213 (549)
T ss_pred CCCcchHHHHHHHHH-HHHHHHHHHHHHHHHHHHH-Hh-C--CCHHHH--HHHHHHHHHHHHhccchhHHHHHHHHHHHH
Confidence 8 5576666665554 3334444555555555553 32 2 232222 222333444555577888888888877777
Q ss_pred HHHHHHHHHHHHHHHh
Q psy9204 246 KLVALFGIIAAGIGYL 261 (265)
Q Consensus 246 ~i~~~~~~ii~g~~~~ 261 (265)
.++..++..+..+.+.
T Consensus 214 m~~~~i~~~~~~l~~~ 229 (549)
T PRK12488 214 LLSGTSFMAFMVLKHF 229 (549)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 7776666555555444
No 105
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter. Lowered cutoffs from 1000/500 to 800/300, promoted from subfamily to equivalog, and put into a Genome Property DHH 9/1/2009
Probab=92.21 E-value=11 Score=36.04 Aligned_cols=29 Identities=17% Similarity=0.167 Sum_probs=25.9
Q ss_pred HHHHHhhhhccCCcccchhhhccccCCCC
Q psy9204 54 SLALYSGLFAFGGWNYLNFVVDELQDPYN 82 (265)
Q Consensus 54 ~~a~~~~~~~y~Gw~~~n~v~~e~k~p~~ 82 (265)
...+....|+|.||+....+.||.|||+|
T Consensus 197 ~~~~~~~~faf~G~E~~a~~a~E~knP~r 225 (507)
T TIGR00910 197 LVVFVAFIGAYMGVEASASHINELENPGR 225 (507)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHccCCcc
Confidence 34666779999999999999999999998
No 106
>PF00474 SSF: Sodium:solute symporter family; InterPro: IPR001734 Sodium/substrate symport (or co-transport) is a widespread mechanism of solute transport across cytoplasmic membranes of pro- and eukaryotic cells. Thereby the energy stored in an inwardly directed electrochemical sodium gradient (sodium motive force, SMF) is used to drive solute accumulation against a concentration gradient. The SMF is generated by primary sodium pumps (e.g. sodium/potassium ATPases, sodium translocating respiratory chain complexes) or via the action of sodium/proton antiporters. Sodium/substrate transporters are grouped in different families based on sequence similarities [, ]. One of these families, known as the sodium:solute symporter family (SSSF), contains over a hundred members of pro- and eukaryotic origin []. The average hydropathy plot for SSSF proteins predicts 11 to 15 putative transmembrane domains (TMs) in alpha-helical conformation. A secondary structure model of PutP from Escherichia coli suggests the protein contains 13 TMs with the N terminus located on the periplasmic side of the membrane and the C terminus facing the cytoplasm. The results support the idea of a common topological motif for members of the SSSF. Transporters with a C-terminal extension are proposed to have an additional 14th TM. An ordered binding model of sodium/substrate transport suggests that sodium binds to the empty transporter first, thereby inducing a conformational alteration which increases the affinity of the transporter for the solute. The formation of the ternary complex induces another structural change that exposes sodium and substrate to the other site of the membrane. Substrate and sodium are released and the empty transporter re-orientates in the membrane allowing the cycle to start again.; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3DH4_D 2XQ2_A.
Probab=91.98 E-value=4.9 Score=37.01 Aligned_cols=161 Identities=12% Similarity=0.037 Sum_probs=72.1
Q ss_pred ccccchhhhHHhhhccccceeeecc-hHHHHHhcccchH-HHHHHHHHHHHHHHHHHHHHHhccccccCCchHHhHHHHh
Q psy9204 89 GQRLVRLEGVSIIVGCIIGSGIFVS-PAGVLAETQSVGL-SIVIWTVCGLLSTIGALCYAELGTCISRSGGDYAYILVAF 166 (265)
Q Consensus 89 ~r~l~~~~~~~l~i~~vig~gi~~~-~~~~~~~~g~~~~-~i~~~~i~~l~~~~~a~~~aEl~s~~P~~GG~y~~~~~~~ 166 (265)
.|+++.+.......++..+...+.. ++... ..|-.+. ..+++.++ ..+..+.++.--. ..+.-....|.+++|
T Consensus 5 gr~~~~~~~~~s~~at~~s~~t~~G~~g~~y-~~G~~~~~~~~~~~~~---~~~~~~~~~~~~r-~~~~~T~~e~~~~Ry 79 (406)
T PF00474_consen 5 GRSLGWWVVAFSLVATWISAWTFIGFPGFAY-SYGISGLWYAIGYAIG---FLLFALFFAPRLR-RSGAVTIPEYLEKRY 79 (406)
T ss_dssp -S---HHHHHHHHHHHHSSHHHHTHHHHHHH-HT-GGGGHHHHHHHHH---HHHHHHHTHHHHH-HTT--SHHHHHHHHT
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHhh-cCCcceeeeccccchh---HHHHHHHHHHhhc-ccchhhhhhhhhhhc
Confidence 4677777655555555444443333 44433 3342211 11112222 1222222222222 223445789999999
Q ss_pred Cchh--HHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Q psy9204 167 GELP--AFLRLWVALLIMRPTTQAIVALTFAQYAIKPFFPDSELPDRAVLLLAAACLCVLTAVNCMSVSWAMQVQTLFTV 244 (265)
Q Consensus 167 g~~~--gf~~gw~~~l~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~l~~~~~in~~gvk~~~~i~~v~~~ 244 (265)
|+.. ..+......+ ......+......+..+.. +.+ . |.. ..+.+..+++..+...-|.|...+.+.+-.+
T Consensus 80 g~~~~~~~~~~i~~i~-~~~~~~~~q~~~~~~~~~~-~~g-i--~~~--~~~~i~~~i~~iYt~~GGl~av~~td~iQ~~ 152 (406)
T PF00474_consen 80 GSKALLRILAAIIIIV-FMIPYLAAQLVGGGALLSV-LFG-I--PYN--TAILIVGVIVIIYTFFGGLRAVAWTDFIQGV 152 (406)
T ss_dssp -HHH-HHHHHHHHHHH-HHHTHHHHHHHHHHHHHHH-HTT-----HH--HHHHHHHHHHHHTTCTT------SHHHHHHH
T ss_pred CCchhhhhhcccccch-hhhhhhhccccccccchhh-ccc-h--hhh--HHHHHHHHHHHHhhhhhhHhhhhHHHHHHHH
Confidence 9988 4444333333 4445566666666666664 332 2 221 2222333444456667788888877777777
Q ss_pred HHHHHHHHHHHHHHHHh
Q psy9204 245 GKLVALFGIIAAGIGYL 261 (265)
Q Consensus 245 ~~i~~~~~~ii~g~~~~ 261 (265)
+.++..+++.+..+...
T Consensus 153 i~~~~~~~~~~~~~~~~ 169 (406)
T PF00474_consen 153 IMIIGAIVVLIFVLSAV 169 (406)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhccchhc
Confidence 77666666665555443
No 107
>PRK09442 panF sodium/panthothenate symporter; Provisional
Probab=91.74 E-value=12 Score=35.47 Aligned_cols=106 Identities=10% Similarity=-0.059 Sum_probs=58.3
Q ss_pred HHHhccccccCCchHHhHHHHhCch-hHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhcCCCCCCchHHHHHHHHHHHHH
Q psy9204 145 YAELGTCISRSGGDYAYILVAFGEL-PAFLRLWVALLIMRPTTQAIVALTFAQYAIKPFFPDSELPDRAVLLLAAACLCV 223 (265)
Q Consensus 145 ~aEl~s~~P~~GG~y~~~~~~~g~~-~gf~~gw~~~l~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~l~~ 223 (265)
+.++.++. +.-....+.+++||+. ...+.+....+ ......+......+..+.. +. +. |.+.. +.+..+++
T Consensus 98 ~~~~~r~~-~~~T~~e~l~~Ryg~~~~~~~~~i~~~~-~~~~~~~~ql~~~g~~l~~-~~-gi--~~~~~--iii~~~iv 169 (483)
T PRK09442 98 FAILARKY-NAVTLNDMLRARYQSRLLVWLASLSLLV-FFFAAMTAQFIGGARLLET-AT-GI--SYETG--LLIFGITV 169 (483)
T ss_pred HHHHHHHc-CCccHHHHHHHHhCChHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH-Hh-CC--CHHHH--HHHHHHHH
Confidence 44444444 3445788999999865 44455444333 3334445555555555554 22 22 22222 22223344
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9204 224 LTAVNCMSVSWAMQVQTLFTVGKLVALFGIIAAGI 258 (265)
Q Consensus 224 ~~~in~~gvk~~~~i~~v~~~~~i~~~~~~ii~g~ 258 (265)
+.+....|.|...+.+.+-.++.++..+++.+..+
T Consensus 170 ~iYt~~GGl~av~~TD~iQ~~i~~~~~~vi~~~~~ 204 (483)
T PRK09442 170 ALYTAFGGFRAVVLTDALQGIVMLVGTVILLIGVI 204 (483)
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666777888887777777776666655544443
No 108
>TIGR02358 thia_cytX probable hydroxymethylpyrimidine transporter CytX. On the basis of a phylogenomic study of thiamine biosythetic, salvage, and transporter genes and a highly conserved RNA element THI, this protein family has been identified as a probable transporter of hydroxymethylpyrimidine (HMP), the phosphorylated (by ThiD) form of which gets joined (by ThiE) to hydroxyethylthiazole phosphate to make thiamine phosphate.
Probab=91.61 E-value=11 Score=34.74 Aligned_cols=98 Identities=11% Similarity=-0.095 Sum_probs=62.7
Q ss_pred hHHhHHHHhCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHhhhhhHHHH
Q psy9204 158 DYAYILVAFGELPAFLRLWVALLIMRPTTQAIVALTFAQYAIKPFFPDSELPDRAVLLLAAACLCVLTAVNCMSVSWAMQ 237 (265)
Q Consensus 158 ~y~~~~~~~g~~~gf~~gw~~~l~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~l~~~~~in~~gvk~~~~ 237 (265)
+....|..||++-+.+......+ ......+.++...++.+........+.... .....++.++......+|.|...|
T Consensus 60 ~~v~sR~~FG~~Gs~~~~~l~~i-~~igW~~v~~~~gg~~l~~~~~~~~~~~~~--~~~~~i~~~l~~~~~~~G~~~i~~ 136 (386)
T TIGR02358 60 AMGSLKLSLGSKGSVLPSLLNLL-QLVGWTAVMIIVGAKAASLLGGRLFGEESP--MLWILIVGILVTLWLLSGPLAFVW 136 (386)
T ss_pred HHHHHHHHHccchhhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhcCCCch--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677788999888888877777 566777777777777666432111111111 111223334566677899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy9204 238 VQTLFTVGKLVALFGIIAAGI 258 (265)
Q Consensus 238 i~~v~~~~~i~~~~~~ii~g~ 258 (265)
++++...+..+..+...+..+
T Consensus 137 ~~~~~~~~~~i~~~~~~~~~~ 157 (386)
T TIGR02358 137 LNNWSVWLLLIATLWLLVVVF 157 (386)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 999998888777766554433
No 109
>PRK15419 proline:sodium symporter PutP; Provisional
Probab=90.52 E-value=17 Score=34.81 Aligned_cols=98 Identities=14% Similarity=-0.085 Sum_probs=52.7
Q ss_pred CCchHHhHHHHhCc---hhHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHhhh
Q psy9204 155 SGGDYAYILVAFGE---LPAFLRLWVALLIMRPTTQAIVALTFAQYAIKPFFPDSELPDRAVLLLAAACLCVLTAVNCMS 231 (265)
Q Consensus 155 ~GG~y~~~~~~~g~---~~gf~~gw~~~l~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~l~~~~~in~~g 231 (265)
.-..+.|.+++||+ ....+.+....+ ......+......+..+.. +++ . +. ...+.+..++...+...-|
T Consensus 107 ~~T~~e~l~~Ry~~~~~~~~~~~~i~~~~-~~~~~~~~ql~~~~~~l~~-~~g-i--~~--~~~iii~~~iv~iYt~~GG 179 (502)
T PRK15419 107 ALTLPDYFTGRFEDKSRILRIISALVILL-FFTIYCASGIVAGARLFES-TFG-M--SY--ETALWAGAAATILYTFIGG 179 (502)
T ss_pred ceeHHHHHHHHhCCCchhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH-HhC-C--CH--HHHHHHHHHHHHHHHHhhh
Confidence 34578999999985 344333333332 2223334444444445443 222 2 22 2233333445666677778
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9204 232 VSWAMQVQTLFTVGKLVALFGIIAAGIG 259 (265)
Q Consensus 232 vk~~~~i~~v~~~~~i~~~~~~ii~g~~ 259 (265)
.|...+.+.+=.++.++..+++.+..+.
T Consensus 180 l~aV~~TD~iQ~~imi~g~i~~~~~~~~ 207 (502)
T PRK15419 180 FLAVSWTDTVQASLMIFALILTPVIVII 207 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8887777777777766655555444443
No 110
>PRK10484 putative transporter; Provisional
Probab=89.63 E-value=20 Score=34.44 Aligned_cols=169 Identities=13% Similarity=0.020 Sum_probs=73.5
Q ss_pred cccccchhhhHHhhhccccceeeec-chHHHHHhcccchHHHHHHHHHHHHH-HHHHHHHHHhccccccCCchHHhHHHH
Q psy9204 88 TGQRLVRLEGVSIIVGCIIGSGIFV-SPAGVLAETQSVGLSIVIWTVCGLLS-TIGALCYAELGTCISRSGGDYAYILVA 165 (265)
Q Consensus 88 l~r~l~~~~~~~l~i~~vig~gi~~-~~~~~~~~~g~~~~~i~~~~i~~l~~-~~~a~~~aEl~s~~P~~GG~y~~~~~~ 165 (265)
-.|+++.+.......++.++...+. .++..+. .|- ....|.....+. .+.+..++.--.+. ..-..+.|.+++
T Consensus 36 agR~l~~~~~~~sl~AT~~Sa~tflG~~g~~y~-~G~---~~~~~~~~~~~~~~~~~~~~~p~~~r~-~~~T~~e~l~~R 110 (523)
T PRK10484 36 AGRSLTGPVIAGSLLLTNLSTEQLVGLNGQAYA-SGM---SVMAWEVTAAIALIILALIFLPRYLKS-GITTIPDFLEER 110 (523)
T ss_pred cCCCCchHHHHHHHHHHHhhHHHHhcchHHHHH-hCH---HHHHHHHHHHHHHHHHHHHHHHHHHhc-CCccHHHHHHHh
Confidence 4678888765555545544433333 3343332 232 212222222222 22333333221222 233468899999
Q ss_pred hCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhc-CC-CCCCchHHHHHHHH--HHHHHHHHHHhhhhhHHHHHHHH
Q psy9204 166 FGELPAFLRLWVALLIMRPTTQAIVALTFAQYAIKPF-FP-DSELPDRAVLLLAA--ACLCVLTAVNCMSVSWAMQVQTL 241 (265)
Q Consensus 166 ~g~~~gf~~gw~~~l~~~~~~~a~~~~~~~~~l~~~~-~~-~~~~~~~~~~~i~~--~~l~~~~~in~~gvk~~~~i~~v 241 (265)
||+......+....+.......+......+..+...+ .+ ....+......+.. +.++...+...-|.|...+.+.+
T Consensus 111 yg~~~~~~~~~~~~i~~~~~~~~~~l~~g~~~l~~i~~~~~~~gi~~~~~~~~~~~~~~~i~~~Yt~~GGl~aV~~TD~i 190 (523)
T PRK10484 111 YDKTTRRIVSILFLIGYVVSFLPIVLYSGALALNSLFHVSELLGISYGAAIWLLVWLIGIIGAIYAVFGGLKAVAVSDTI 190 (523)
T ss_pred cCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhcCCcHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHH
Confidence 9987655544443331111111211112222222111 00 01112222222211 12334556666778888877777
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q psy9204 242 FTVGKLVALFGIIAAGIGYL 261 (265)
Q Consensus 242 ~~~~~i~~~~~~ii~g~~~~ 261 (265)
=.++.++..+++.+.++...
T Consensus 191 Q~vim~i~~iiv~~~~l~~~ 210 (523)
T PRK10484 191 NGIGLLIGGLLVPVFGLIAL 210 (523)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 77776666555544444443
No 111
>TIGR02711 symport_actP cation/acetate symporter ActP. Members of this family belong to the Sodium:solute symporter family. Both members of this family and other close homologs tend to be encoded next to a member of Pfam family pfam04341, a set of uncharacterized membrane proteins. The characterized member from E. coli is encoded near and cotranscribed with the acetyl coenzyme A synthetase (acs) gene. Proximity to an acs gene was used as one criterion for determining the trusted cutoff for this model. Closely related proteins may differ in function and are excluded by the high cutoffs of this model; members of the family of phenylacetic acid transporter PhaJ can score as high as 1011 bits.
Probab=89.37 E-value=22 Score=34.49 Aligned_cols=96 Identities=9% Similarity=-0.109 Sum_probs=51.9
Q ss_pred hHHhHHHHhC-chhHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHhhhhhHHH
Q psy9204 158 DYAYILVAFG-ELPAFLRLWVALLIMRPTTQAIVALTFAQYAIKPFFPDSELPDRAVLLLAAACLCVLTAVNCMSVSWAM 236 (265)
Q Consensus 158 ~y~~~~~~~g-~~~gf~~gw~~~l~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~l~~~~~in~~gvk~~~ 236 (265)
...|.+++|+ |....+.+....+ .............+..+.. +++ .+.+.. +.+..++...+.-.-|.|...
T Consensus 132 ~~d~l~~Rf~s~~~r~l~ai~~i~-~~~~yl~~ql~g~g~il~~-~~g---i~~~~~--iii~~~i~~~Yt~~GGm~av~ 204 (549)
T TIGR02711 132 FADVASYRLKQRPIRILSACGSLV-VVALYLIAQMVGAGKLIEL-LFG---LNYHVA--VVLVGILMVMYVLFGGMLATT 204 (549)
T ss_pred HHHHHHHHcCCcchhHHHHHHHHH-HHHHHHHHHHHHHHHHHHH-HHC---CCHHHH--HHHHHHHHHHHHHhhhhHHHH
Confidence 5667778887 4455655554444 2333344444444444443 322 232222 223333445556667888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy9204 237 QVQTLFTVGKLVALFGIIAAGIGY 260 (265)
Q Consensus 237 ~i~~v~~~~~i~~~~~~ii~g~~~ 260 (265)
+.+.+=.++.++..+++.+..+..
T Consensus 205 ~td~iQ~~im~~g~i~~~~~~~~~ 228 (549)
T TIGR02711 205 WVQIIKAVLLLFGATFMAFMVMKS 228 (549)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888777777766665554444433
No 112
>PF01566 Nramp: Natural resistance-associated macrophage protein; InterPro: IPR001046 The natural resistance-associated macrophage protein (NRAMP) family consists of Nramp1, Nramp2, and yeast proteins Smf1 and Smf2. The NRAMP family is a novel family of functionally related proteins defined by a conserved hydrophobic core of ten transmembrane domains []. Nramp1 is an integral membrane protein expressed exclusively in cells of the immune system and is recruited to the membrane of a phagosome upon phagocytosis. Nramp2 is a multiple divalent cation transporter for Fe2+, Mn2+ and Zn2+ amongst others. It is expressed at high levels in the intestine; and is major transferrin-independent iron uptake system in mammals []. The yeast proteins Smf1 and Smf2 may also transport divalent cations []. The natural resistance of mice to infection with intracellular parasites is controlled by the Bcg locus, which modulates the cytostatic/cytocidal activity of phagocytes. Nramp1, the gene responsible, is expressed exclusively in macrophages and poly-morphonuclear leukocytes, and encodes a polypeptide (natural resistance-associated macrophage protein) with features typical of integral membrane proteins. Other transporter proteins from a variety of sources also belong to this family.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane
Probab=89.25 E-value=17 Score=33.03 Aligned_cols=63 Identities=22% Similarity=0.152 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHhcccccc--CCchHHhHHHHhCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Q psy9204 136 LLSTIGALCYAELGTCISR--SGGDYAYILVAFGELPAFLRLWVALLIMRPTTQAIVALTFAQYAI 199 (265)
Q Consensus 136 l~~~~~a~~~aEl~s~~P~--~GG~y~~~~~~~g~~~gf~~gw~~~l~~~~~~~a~~~~~~~~~l~ 199 (265)
+++.+..+.+-|++.++-. ..+...-.++.+||.+++...-...+ ........+....+.-+.
T Consensus 20 ll~~~~~~~~q~~~~R~~~~Tg~~l~~~~~~~~g~~~~~~~~~~~~l-~~~~~~~~~~~g~a~al~ 84 (358)
T PF01566_consen 20 LLSNLLKYVFQEMAARLGIVTGKGLAEGIRERFGRGWAWFLWILIFL-ANIATQAAEIIGIAIALN 84 (358)
T ss_pred HHHHHHHHHHHHHHHHHhhhcCCChhhhhhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 3567777888888888864 34456667788888887776655444 333333444444443333
No 113
>KOG1286|consensus
Probab=89.13 E-value=4.7 Score=39.17 Aligned_cols=31 Identities=16% Similarity=0.382 Sum_probs=27.6
Q ss_pred HHHHHHHhhhhccCCcccchhhhccccCCCC
Q psy9204 52 KISLALYSGLFAFGGWNYLNFVVDELQDPYN 82 (265)
Q Consensus 52 ~~~~a~~~~~~~y~Gw~~~n~v~~e~k~p~~ 82 (265)
++..++..+.|+|.|-+.+....||.|||+|
T Consensus 233 Gv~s~~~~~~fsf~G~e~va~~a~E~kNP~k 263 (554)
T KOG1286|consen 233 GVLSGAATAFFSFIGFELVATTAEEAKNPRK 263 (554)
T ss_pred eeeHHHHHHHHHHhhHHHHHHHHHhccCCcc
Confidence 4555777888999999999999999999998
No 114
>PLN03074 auxin influx permease; Provisional
Probab=88.66 E-value=19 Score=34.28 Aligned_cols=85 Identities=14% Similarity=0.105 Sum_probs=43.4
Q ss_pred cchhhhHHhhhccccceeeecchHHHHHhcccchHHHHHHHHHHHHHHHHHH----HHHHhccccccCCchH-----Hh-
Q psy9204 92 LVRLEGVSIIVGCIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTIGAL----CYAELGTCISRSGGDY-----AY- 161 (265)
Q Consensus 92 l~~~~~~~l~i~~vig~gi~~~~~~~~~~~g~~~~~i~~~~i~~l~~~~~a~----~~aEl~s~~P~~GG~y-----~~- 161 (265)
.+..+...-.....+|.|+..+|... ...|-. ..++..++.+++..-.+. ++-|...+.|+.+-.| .|
T Consensus 46 ~s~~~~~~~l~~~~vG~GILaLP~Af-~~~G~v-~Gii~lv~~~~l~~Yt~~lL~~~~~~~~~r~~~~~~~~~~~~~~~~ 123 (473)
T PLN03074 46 GSVYDAWFSCASNQVAQVLLTLPYSF-SQLGML-SGILFQIFYGLLGSWTAYLISVLYVEYRARKEREKVDFKNHVIQWF 123 (473)
T ss_pred chHHHHHHHHHHHHHhHHHHhHHHHH-HHccHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcCCCchhHHHHHHH
Confidence 34444444456667788888888663 343422 222222333433333333 4456676666644222 22
Q ss_pred --HHHHhCchhHHHHHHHH
Q psy9204 162 --ILVAFGELPAFLRLWVA 178 (265)
Q Consensus 162 --~~~~~g~~~gf~~gw~~ 178 (265)
..+.+||.+..+.....
T Consensus 124 e~~~~~~G~~~~~~~~~~~ 142 (473)
T PLN03074 124 EVLDGLLGPYWKNVGLAFN 142 (473)
T ss_pred HHHHHhcChhHHHHHHHHH
Confidence 23567888776664433
No 115
>PRK00701 manganese transport protein MntH; Reviewed
Probab=88.52 E-value=22 Score=33.48 Aligned_cols=40 Identities=15% Similarity=0.103 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHhcccccc-CC-chHHhHHHHhCchhHHHHH
Q psy9204 136 LLSTIGALCYAELGTCISR-SG-GDYAYILVAFGELPAFLRL 175 (265)
Q Consensus 136 l~~~~~a~~~aEl~s~~P~-~G-G~y~~~~~~~g~~~gf~~g 175 (265)
+++.+....+-|++.++-. +| +...-.+++++|++++...
T Consensus 72 lls~~~~~~~Q~~~~RlgivTG~~l~~~ir~~~~~~~~~~~~ 113 (439)
T PRK00701 72 LLSNLMAMLLQSLSAKLGIATGRDLAQACRDRYPRPVVWFLW 113 (439)
T ss_pred HHHHHHHHHHHHHHhHhhhhcCCCHHHHHHHHCCchHHHHHH
Confidence 4566677788888888764 33 6788888999998877653
No 116
>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [], [], []. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. This domain is found in a wide variety of permeases, as well as several hypothetical proteins. ; GO: 0006810 transport, 0055085 transmembrane transport, 0016020 membrane
Probab=86.08 E-value=0.65 Score=43.91 Aligned_cols=35 Identities=23% Similarity=0.407 Sum_probs=32.7
Q ss_pred CChhHHHHHHHhhhhccCCcccchhhhccccCCCC
Q psy9204 48 YDITKISLALYSGLFAFGGWNYLNFVVDELQDPYN 82 (265)
Q Consensus 48 ~~~~~~~~a~~~~~~~y~Gw~~~n~v~~e~k~p~~ 82 (265)
.+..++..++..+.++|.|.+......||.|||+|
T Consensus 197 ~~~~~~~~~~~~~~~af~G~e~~a~~a~E~k~P~k 231 (478)
T PF00324_consen 197 GGFSGFFAALVFAFFAFVGFESIAILAEEAKNPRK 231 (478)
T ss_pred cchhHHHHhhhhhhcccccccccccccccCCCchh
Confidence 45778999999999999999999999999999998
No 117
>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]
Probab=85.74 E-value=4 Score=38.35 Aligned_cols=35 Identities=29% Similarity=0.406 Sum_probs=32.2
Q ss_pred CChhHHHHHHHhhhhccCCcccchhhhccccCCCC
Q psy9204 48 YDITKISLALYSGLFAFGGWNYLNFVVDELQDPYN 82 (265)
Q Consensus 48 ~~~~~~~~a~~~~~~~y~Gw~~~n~v~~e~k~p~~ 82 (265)
..+.++-.++.-+.|||.|=+-...-..|.|||++
T Consensus 200 ~G~~g~~~~~~~v~Faf~GiElvGitA~Et~dP~k 234 (462)
T COG1113 200 NGFLGFLSALQIVMFAFGGIELVGITAAEAKDPEK 234 (462)
T ss_pred CchHHHHHHHHHHHHHHhhHHHHHHHHHhhcChhh
Confidence 35778889999999999999999999999999998
No 118
>TIGR02121 Na_Pro_sym sodium/proline symporter. This family consists of the sodium/proline symporter (proline permease) from a number of Gram-negative and Gram-positive bacteria and from the archaeal genus Methanosarcina. Using the related pantothenate permease as an outgroup, candidate sequences from Bifidobacterium longum and several from archaea are found to be outside the clade defined by known proline permeases. These sequences, scoring between 570 and -40, define the range between trusted and noise cutoff scores.
Probab=85.54 E-value=34 Score=32.53 Aligned_cols=97 Identities=8% Similarity=-0.078 Sum_probs=51.1
Q ss_pred CchHHhHHHHhCch---hHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHhhhh
Q psy9204 156 GGDYAYILVAFGEL---PAFLRLWVALLIMRPTTQAIVALTFAQYAIKPFFPDSELPDRAVLLLAAACLCVLTAVNCMSV 232 (265)
Q Consensus 156 GG~y~~~~~~~g~~---~gf~~gw~~~l~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~l~~~~~in~~gv 232 (265)
-..+.|.+++||+. ...+.+-...+ ......+......+..+.. +.+ .+.+. .+.+..++.+.+...-|.
T Consensus 104 ~T~~e~l~~Ryg~~~~~~~~~~ai~~~~-~~~~~~~~~l~~~~~~l~~-~~g---i~~~~--~iii~~~i~~~Yt~~GGl 176 (487)
T TIGR02121 104 ITLPDFFENRFNDKSRLLRIISALIILV-FFTIYTSSGLVAGGKLFES-TFG---LDYKT--GLLIGALIIVIYTFFGGF 176 (487)
T ss_pred ccHHHHHHHHhCCCCchhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH-HhC---ccHHH--HHHHHHHHHHHHHHhhhH
Confidence 34689999999953 33333332222 2222334444444444443 222 22222 222333455666777788
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9204 233 SWAMQVQTLFTVGKLVALFGIIAAGIG 259 (265)
Q Consensus 233 k~~~~i~~v~~~~~i~~~~~~ii~g~~ 259 (265)
|...+.+.+=.++.++..+++.+..+.
T Consensus 177 ~av~~TD~iQ~~i~~~~~~~v~~~~~~ 203 (487)
T TIGR02121 177 LAVSWTDFVQGLLMFFALVLVPIVALF 203 (487)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 887777777666666655544444433
No 119
>COG1966 CstA Carbon starvation protein, predicted membrane protein [Signal transduction mechanisms]
Probab=76.43 E-value=78 Score=30.75 Aligned_cols=99 Identities=15% Similarity=0.096 Sum_probs=51.7
Q ss_pred hhHHhhhccccceeeecchHHHHHhcc-cchHHHHHHHHHHHHHHHHHHH-HHHhccccccCCchHHhHHHHhCchhHHH
Q psy9204 96 EGVSIIVGCIIGSGIFVSPAGVLAETQ-SVGLSIVIWTVCGLLSTIGALC-YAELGTCISRSGGDYAYILVAFGELPAFL 173 (265)
Q Consensus 96 ~~~~l~i~~vig~gi~~~~~~~~~~~g-~~~~~i~~~~i~~l~~~~~a~~-~aEl~s~~P~~GG~y~~~~~~~g~~~gf~ 173 (265)
-+..--+.++.|.|-...|...++. | .++ ..|++.+.+..-..-= ++-+.|...+.-+.-..+++.+|+..+.+
T Consensus 56 vlfGhHFaaIAGAGPivGPvlAAq~-G~Lp~---~LWIl~G~VfaGaVhD~~~L~~SvR~~G~Si~~ia~~~lG~~a~~~ 131 (575)
T COG1966 56 VLFGHHFASIAGAGPIVGPALAAQY-GWLPA---FLWILLGCVFAGAVHDYFSLMLSVRHGGKSIGEIAGKYLGRTAKVF 131 (575)
T ss_pred hhhHHHHHHHhccCcchhHHHHHHh-cCcHH---HHHHHHhhhhhhhhhhhhheeeeeccCCccHHHHHHHHhhhhHHHH
Confidence 3344455566667766666554444 4 222 3456544333222222 23334443344445677789999999888
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhh
Q psy9204 174 RLWVALLIMRPTTQAIVALTFAQYAI 199 (265)
Q Consensus 174 ~gw~~~l~~~~~~~a~~~~~~~~~l~ 199 (265)
.....++ ......+..+...++.+.
T Consensus 132 ~~~~~l~-iliiv~Avfa~vv~~~l~ 156 (575)
T COG1966 132 FLLLALI-LLILVGAVFAAVIAKLLA 156 (575)
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHh
Confidence 8766555 333444444444444443
No 120
>TIGR00930 2a30 K-Cl cotransporter.
Probab=75.65 E-value=1.1e+02 Score=32.03 Aligned_cols=22 Identities=18% Similarity=0.182 Sum_probs=20.4
Q ss_pred hhccCCcccchhhhccccCCCC
Q psy9204 61 LFAFGGWNYLNFVVDELQDPYN 82 (265)
Q Consensus 61 ~~~y~Gw~~~n~v~~e~k~p~~ 82 (265)
+++|.||....++.+|.|||+|
T Consensus 290 F~A~tGi~agan~sgElKnP~r 311 (953)
T TIGR00930 290 FPSVTGILAGANISGDLKDPQK 311 (953)
T ss_pred HHHHHHHHHHHHHHHhccChhh
Confidence 3589999999999999999998
No 121
>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism]
Probab=74.37 E-value=85 Score=30.39 Aligned_cols=50 Identities=12% Similarity=0.199 Sum_probs=38.1
Q ss_pred hhHHHHHHHhhhhccCCcccchhhhccccCCCCCCccccccccchhhhHHh
Q psy9204 50 ITKISLALYSGLFAFGGWNYLNFVVDELQDPYNLVLPVTGQRLVRLEGVSI 100 (265)
Q Consensus 50 ~~~~~~a~~~~~~~y~Gw~~~n~v~~e~k~p~~~~~~~l~r~l~~~~~~~l 100 (265)
..++...+..+-|||.|-+.+..-..|.+||+| ..|+--|+.=++-++..
T Consensus 233 f~g~~~v~v~a~Fsf~GtElvgiaAgEs~nP~K-~iPkAik~vfwRIl~FY 282 (541)
T COG0833 233 FKGFCSVFVIAAFSFSGTELVGLAAGESENPRK-SIPKAIKQVFWRILLFY 282 (541)
T ss_pred hHHHHHHHhhheeeeeceeeeeeeecccCCchh-hhHHHHHHHHHHHHHHH
Confidence 456788899999999999999999999999999 55554444444444333
No 122
>PF02028 BCCT: BCCT family transporter; InterPro: IPR000060 These prokaryotic transport proteins belong to a family known as BCCT (for Betaine / Carnitine / Choline Transporters) and are specific for compounds containing a quaternary nitrogen atom. The BCCT proteins contain 12 transmembrane regions and are energized by proton symport. They contain a conserved region with four tryptophans in their central region [].; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 2WSX_B 3HFX_A 2WSW_A 4DOJ_B 2WIT_C 4AIN_A 3P03_B.
Probab=73.43 E-value=88 Score=29.96 Aligned_cols=168 Identities=10% Similarity=0.068 Sum_probs=80.3
Q ss_pred cccccchhhhHHhhhccccceeeecc--hHHHHHhc--------ccchH------------HHHHHHHHHHHHHHHHHHH
Q psy9204 88 TGQRLVRLEGVSIIVGCIIGSGIFVS--PAGVLAET--------QSVGL------------SIVIWTVCGLLSTIGALCY 145 (265)
Q Consensus 88 l~r~l~~~~~~~l~i~~vig~gi~~~--~~~~~~~~--------g~~~~------------~i~~~~i~~l~~~~~a~~~ 145 (265)
-|.+.+.++-.+|.+++-+|.|+..- ...+.... ++... .+.+|.+=++..+..++.+
T Consensus 71 ~kPefS~~sW~aMlf~aGig~GivfwgvaEP~~~~~~pP~~~~p~s~~A~~~A~~~~~fHWG~~~Wa~Y~~~~l~~ay~~ 150 (485)
T PF02028_consen 71 AKPEFSTFSWFAMLFCAGIGAGIVFWGVAEPLYHYQSPPFGIEPGSPEAAEWAMAYSFFHWGFHAWAIYALVGLAIAYFF 150 (485)
T ss_dssp S--SS-HHHHHHHHHHHCSSHHHHHHHHHHHHHHHHS-STT-TTT-HHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCchHHHHHHHHHHhcchhhcchhHhhHHHhcCCCCCCCCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHheee
Confidence 34477788888888888777665321 01111111 11000 0223555555566666554
Q ss_pred HHhccccccCCchHHhHHHHhCchhHHHHHHHHHHH---HHhhHHHHHHHHHHHHhhhhcCCCCCCchHHHHHHHHHHHH
Q psy9204 146 AELGTCISRSGGDYAYILVAFGELPAFLRLWVALLI---MRPTTQAIVALTFAQYAIKPFFPDSELPDRAVLLLAAACLC 222 (265)
Q Consensus 146 aEl~s~~P~~GG~y~~~~~~~g~~~gf~~gw~~~l~---~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~l~ 222 (265)
-.-...+.-+...+.-..++..+.+|.+.-....+. +.....+........-+.. ++ +.+++...+..+..++.+
T Consensus 151 y~k~~~~~~ss~l~pl~g~~~~g~~g~~ID~l~i~a~~~GvatslGlg~~qi~~gl~~-~~-Gi~~~~~~~~~ii~~~~~ 228 (485)
T PF02028_consen 151 YNKGKPLRISSALYPLLGDRINGPLGKIIDILAIFATIFGVATSLGLGVPQISAGLSS-LF-GIPNTFGLQIIIIIVITV 228 (485)
T ss_dssp HTS---SSGGGGCHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HC-TSSSTHHHHHHHHHHHHH
T ss_pred eecCCCCchhhhhhhhcCCcccCcchhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHH-Hc-CCCCchHHHHHHHHHHHH
Confidence 443332223444455555444444455444433331 1222222233333333333 22 344455556666666666
Q ss_pred HHHHHHhhhh-hHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9204 223 VLTAVNCMSV-SWAMQVQTLFTVGKLVALFGIIAAG 257 (265)
Q Consensus 223 ~~~~in~~gv-k~~~~i~~v~~~~~i~~~~~~ii~g 257 (265)
+.+.-...|+ |-.+++.++-..+.+..++.+.++|
T Consensus 229 i~~~S~~~Gl~kGIk~LS~~n~~l~~~ll~~vl~~G 264 (485)
T PF02028_consen 229 IFTISAVSGLDKGIKRLSNINVYLAFALLLFVLLFG 264 (485)
T ss_dssp HHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 7777777776 4466666666666666665555554
No 123
>PF01490 Aa_trans: Transmembrane amino acid transporter protein; InterPro: IPR013057 This transmembrane region is found in many amino acid transporters including P34579 from SWISSPROT (UNC-47) and P40501 from SWISSPROT (MTR). UNC-47 encodes a vesicular amino butyric acid (GABA) transporter, (VGAT) and is is predicted to have 10 transmembrane domains UNC47_CAEEL []. MTR is an N system amino acid transporter system protein involved in methyltryptophan resistance MTR_NEUCR. Other members of this family include proline transporters and amino acid transporters whose specificity has not yet been identified.
Probab=68.80 E-value=0.13 Score=47.30 Aligned_cols=107 Identities=16% Similarity=0.203 Sum_probs=66.1
Q ss_pred cccchhhhHHhhhccccceeeecchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhccccccCCchHHh---HHHHh
Q psy9204 90 QRLVRLEGVSIIVGCIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTIGALCYAELGTCISRSGGDYAY---ILVAF 166 (265)
Q Consensus 90 r~l~~~~~~~l~i~~vig~gi~~~~~~~~~~~g~~~~~i~~~~i~~l~~~~~a~~~aEl~s~~P~~GG~y~~---~~~~~ 166 (265)
||-+.++.....+..++|+|.+.+|-.... .|-. ..++..++.++++......+.|.....|+..+...| .++.+
T Consensus 1 ~~~s~~~~~~~l~~~~iG~G~L~lP~af~~-~G~~-~g~i~l~~~~~~s~~t~~~l~~~~~~~~~~~~~~~y~~l~~~~~ 78 (409)
T PF01490_consen 1 HKGSWFSAFFNLINSIIGAGILSLPYAFAQ-SGWV-LGIILLVLVALLSYYTMYLLVRAANAMPNGTGRRSYGDLARRAF 78 (409)
T ss_pred CCccHHHHHHHHHHHHHhHHHHHHHHHHHH-hhhh-hhhHHHHHHHHHHHHhhhhhhccccccccccccccccccccccc
Confidence 456778888888999999999999866444 3422 223333566666667777788877776522233333 35889
Q ss_pred CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Q psy9204 167 GELPAFLRLWVALLIMRPTTQAIVALTFAQYAI 199 (265)
Q Consensus 167 g~~~gf~~gw~~~l~~~~~~~a~~~~~~~~~l~ 199 (265)
||+..++......+ .............++.+.
T Consensus 79 G~~~~~~~~~~~~~-~~~g~~v~y~i~~~~~l~ 110 (409)
T PF01490_consen 79 GPKGKWFVDICIFI-YLFGSCVAYLIIIGDSLS 110 (409)
T ss_pred cccccccccchhee-ccccccceeEEEeeeeee
Confidence 99888777766555 333333333333444444
No 124
>TIGR00814 stp serine transporter. The HAAAP family includes well characterized aromatic amino acid:H+ symport permeases and hydroxy amino acid permeases. This subfamily is specific for hydroxy amino acid transporters and includes the serine permease, SdaC, of E. coli, and the threonine permease, TdcC, of E. coli.
Probab=65.23 E-value=1.2e+02 Score=28.20 Aligned_cols=33 Identities=15% Similarity=0.169 Sum_probs=25.8
Q ss_pred ChhHHHHHHHhhhhccCCcccchhhh----ccccCCC
Q psy9204 49 DITKISLALYSGLFAFGGWNYLNFVV----DELQDPY 81 (265)
Q Consensus 49 ~~~~~~~a~~~~~~~y~Gw~~~n~v~----~e~k~p~ 81 (265)
.+..+-.++--..|||.|++...... +|.+||+
T Consensus 184 ~~~~i~~alpv~~~SF~~~~iIssl~~~~~~~~~~~~ 220 (397)
T TIGR00814 184 FLKTLWLTIPVMVFSFNHSPIISSFAISYREEYGDKE 220 (397)
T ss_pred hHHHHHHHHHHHHHHHHccccchHHHHHHHHHcCCcc
Confidence 35678889999999999999998887 4445444
No 125
>PRK09950 putative transporter; Provisional
Probab=62.88 E-value=1.5e+02 Score=28.60 Aligned_cols=49 Identities=4% Similarity=0.072 Sum_probs=26.6
Q ss_pred chHHHHHHHHHHHHHHHHHHhhhh-hHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9204 209 PDRAVLLLAAACLCVLTAVNCMSV-SWAMQVQTLFTVGKLVALFGIIAAG 257 (265)
Q Consensus 209 ~~~~~~~i~~~~l~~~~~in~~gv-k~~~~i~~v~~~~~i~~~~~~ii~g 257 (265)
+...+..+..++.++.+.-...|+ |-.+|+.++-..+.++.++.+.++|
T Consensus 225 ~~~~~~~ii~vi~~if~~S~~~Gl~kGIk~LS~~N~~la~~ll~~vli~G 274 (506)
T PRK09950 225 NFTVQAFVILLSGVIFCLSSYIGIDNGLQRLSKMVGWGAFLFALLVLIVG 274 (506)
T ss_pred chHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhheeecc
Confidence 333344444555555666666666 5566666666555555555444443
No 126
>PRK09928 choline transport protein BetT; Provisional
Probab=61.43 E-value=1.3e+02 Score=30.02 Aligned_cols=22 Identities=14% Similarity=0.197 Sum_probs=16.3
Q ss_pred ccccchhhhHHhhhccccceee
Q psy9204 89 GQRLVRLEGVSIIVGCIIGSGI 110 (265)
Q Consensus 89 ~r~l~~~~~~~l~i~~vig~gi 110 (265)
|.+++.++-++|.+++-+|.|+
T Consensus 90 kPefS~~sW~aMLFaAGmGigL 111 (679)
T PRK09928 90 KPEFSLLSWAAMLFAAGIGIDL 111 (679)
T ss_pred CCCCCcchHHHHHHHHhhhhhh
Confidence 4577888888888888666664
No 127
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional
Probab=59.00 E-value=1.6e+02 Score=27.79 Aligned_cols=93 Identities=15% Similarity=0.126 Sum_probs=61.0
Q ss_pred HHhHHHHhCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHhhhhhHHHHH
Q psy9204 159 YAYILVAFGELPAFLRLWVALLIMRPTTQAIVALTFAQYAIKPFFPDSELPDRAVLLLAAACLCVLTAVNCMSVSWAMQV 238 (265)
Q Consensus 159 y~~~~~~~g~~~gf~~gw~~~l~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~l~~~~~in~~gvk~~~~i 238 (265)
-..+.+.+|+....+.+-..++ .+..+......++++++.+. .+ .+ ......++.++...+...|.+..-++
T Consensus 268 ~~~~~~~~G~~G~~ll~iiv~l-ACLTTaIGLi~a~a~~f~~~-~~---is---Y~~~v~i~~l~S~~lSn~G~~~II~~ 339 (439)
T PRK15433 268 HAYVQHTFGGGGSFLLAALIFI-ACLVTAVGLTCACAEFFAQY-VP---LS---YRTLVFILGGFSMVVSNLGLSQLIQI 339 (439)
T ss_pred HHHHHHHhCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhh-cC---Cc---HHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 3445689999999999988888 78788888899999999863 23 11 23455556666777777777665555
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy9204 239 QTLFTVGKLVALFGIIAAGIG 259 (265)
Q Consensus 239 ~~v~~~~~i~~~~~~ii~g~~ 259 (265)
..=...+.-=..+++++.++.
T Consensus 340 s~PiL~~iYP~~IvLill~l~ 360 (439)
T PRK15433 340 SVPVLTAIYPPCIALVVLSFT 360 (439)
T ss_pred HHHHHHHHhHHHHHHHHHHHH
Confidence 544444443334444444443
No 128
>TIGR00842 bcct choline/carnitine/betaine transport. properties inherent to their polypeptide chains.
Probab=56.42 E-value=1.8e+02 Score=27.57 Aligned_cols=46 Identities=9% Similarity=0.029 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhh-hHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9204 212 AVLLLAAACLCVLTAVNCMSV-SWAMQVQTLFTVGKLVALFGIIAAG 257 (265)
Q Consensus 212 ~~~~i~~~~l~~~~~in~~gv-k~~~~i~~v~~~~~i~~~~~~ii~g 257 (265)
.+..+..++.++.+.-...|+ |-.+|+.++-..+.++.++.+.++|
T Consensus 181 ~~~~ii~~i~~~f~~S~~~Gl~kGIk~LS~~n~~l~~~ll~fvli~G 227 (453)
T TIGR00842 181 LQALIILCVTALACISVASGVGKGIKILSNINMALAFLLLLFVLIVG 227 (453)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 344444444455555555555 4555555555555555554444443
No 129
>COG1914 MntH Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism]
Probab=54.66 E-value=1.9e+02 Score=27.16 Aligned_cols=40 Identities=25% Similarity=0.169 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHhcccccc-CC-chHHhHHHHhCchhHHHHH
Q psy9204 136 LLSTIGALCYAELGTCISR-SG-GDYAYILVAFGELPAFLRL 175 (265)
Q Consensus 136 l~~~~~a~~~aEl~s~~P~-~G-G~y~~~~~~~g~~~gf~~g 175 (265)
+++-+..+..-|++.++-. +| |.-.-.+++++|+++++..
T Consensus 55 lls~l~~~~~Q~~~arLgivTG~~laq~ir~~y~~~~~~~~~ 96 (416)
T COG1914 55 LLSNLMAYILQELSARLGIVTGKGLAEAIRERYLPGLGILLW 96 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHccchHHHHHH
Confidence 3455556666666666653 22 3566677888888876653
No 130
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)). They function by a Na+ or H+ symport mechanism and display 12 putative transmembrane helical spanners.; GO: 0015658 branched-chain aliphatic amino acid transmembrane transporter activity, 0015803 branched-chain aliphatic amino acid transport, 0016021 integral to membrane
Probab=44.84 E-value=2.7e+02 Score=26.20 Aligned_cols=94 Identities=12% Similarity=0.044 Sum_probs=61.0
Q ss_pred HHhHHHHhCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHhhhhhHHHHH
Q psy9204 159 YAYILVAFGELPAFLRLWVALLIMRPTTQAIVALTFAQYAIKPFFPDSELPDRAVLLLAAACLCVLTAVNCMSVSWAMQV 238 (265)
Q Consensus 159 y~~~~~~~g~~~gf~~gw~~~l~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~l~~~~~in~~gvk~~~~i 238 (265)
-..+++.+|+.-..+.+-...+ .+..+......++++|+++ ..+... -.....+..++...+..+|.+..-++
T Consensus 264 ~~i~~~~~G~~G~~ll~iiv~l-ACLTTaIGL~~a~a~yf~~-~~~kis-----Y~~~v~i~~i~S~~ian~Gl~~Ii~~ 336 (427)
T PF05525_consen 264 SQIANHLFGSAGQILLGIIVFL-ACLTTAIGLISACAEYFSE-LFPKIS-----YKVWVIIFTIFSFIIANLGLDQIIKI 336 (427)
T ss_pred HHHHHHHcChhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH-HhcccC-----hHHHHHHHHHHHHHHHHhCHHHHHHH
Confidence 3445578999888888888777 7777777888889999986 444222 23445555667777888887766655
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy9204 239 QTLFTVGKLVALFGIIAAGIG 259 (265)
Q Consensus 239 ~~v~~~~~i~~~~~~ii~g~~ 259 (265)
..=...+.-=..+++++.++.
T Consensus 337 s~PiL~~iYP~~IvLIll~l~ 357 (427)
T PF05525_consen 337 SVPILMFIYPVAIVLILLNLF 357 (427)
T ss_pred HHHHHHHHhHHHHHHHHHHHH
Confidence 554444443344444444443
No 131
>PF02554 CstA: Carbon starvation protein CstA; InterPro: IPR003706 Escherichia coli induces the synthesis of at least 30 proteins at the onset of carbon starvation, two-thirds of which are positively regulated by the cyclic AMP (cAMP) and cAMP receptor protein (CRP) complex. This family consists of carbon starvation protein CstA a predicted membrane protein. It has been suggested that CstA is involved in peptide utilization [].; GO: 0009267 cellular response to starvation, 0016020 membrane
Probab=43.60 E-value=2.7e+02 Score=25.75 Aligned_cols=82 Identities=18% Similarity=0.153 Sum_probs=42.5
Q ss_pred hhHHhhhccccceeeecchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhcccccc-CCchHHhHHHHhCchhHHHH
Q psy9204 96 EGVSIIVGCIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTIGALCYAELGTCISR-SGGDYAYILVAFGELPAFLR 174 (265)
Q Consensus 96 ~~~~l~i~~vig~gi~~~~~~~~~~~g~~~~~i~~~~i~~l~~~~~a~~~aEl~s~~P~-~GG~y~~~~~~~g~~~gf~~ 174 (265)
-++.--+.++.|.|-...|... ..-|. ...+.|++-+-+..-..-=|..+-....+ .-+.-.-+++..||+.+.+.
T Consensus 56 vlfghhf~sIAGaGPI~GPi~a-a~~Gw--lPa~lWI~~G~if~GaVHD~~sl~~SvR~~G~Si~~i~~~~lG~~~~~lf 132 (376)
T PF02554_consen 56 VLFGHHFASIAGAGPIVGPILA-AQFGW--LPALLWIVFGCIFAGAVHDYGSLMASVRHKGKSIGEIAGKYLGKRAKKLF 132 (376)
T ss_pred HhhHHHHHHHhccccchHHHHH-HHhcc--hHHHHHHHHccHHHHHHHHHHHHhhhhcCCCccHHHHHHHHHHHHHHHHH
Confidence 3344445555555655554333 22232 11244665554444443334443333333 33445566688898888887
Q ss_pred HHHHHH
Q psy9204 175 LWVALL 180 (265)
Q Consensus 175 gw~~~l 180 (265)
....++
T Consensus 133 ~~f~~~ 138 (376)
T PF02554_consen 133 LIFIFF 138 (376)
T ss_pred HHHHHH
Confidence 776665
No 132
>KOG2466|consensus
Probab=42.72 E-value=3.2e+02 Score=26.39 Aligned_cols=174 Identities=15% Similarity=0.086 Sum_probs=82.2
Q ss_pred ccCCCCCCccccccccchhhhHHhhhccccceeeecchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhccccccCC
Q psy9204 77 LQDPYNLVLPVTGQRLVRLEGVSIIVGCIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTIGALCYAELGTCISRSG 156 (265)
Q Consensus 77 ~k~p~~~~~~~l~r~l~~~~~~~l~i~~vig~gi~~~~~~~~~~~g~~~~~i~~~~i~~l~~~~~a~~~aEl~s~~P~~G 156 (265)
++||+-.|-|.-||..++++-+.+=.+.....+.+...+..+...-+..-.+....++-++....... .+ ..|
T Consensus 41 L~N~DL~Pv~~~~Rtws~~~~~~fW~~~~fnv~Tw~ia~s~l~lGLswwq~~~tv~vG~~~~~~f~~l----ns---~~G 113 (572)
T KOG2466|consen 41 LTNPDLKPVPPSRRTWSWWNYIAFWLADSFNVNTWMIAGSALELGLSWWQTWITVWVGYLFTAIFLVL----NS---RPG 113 (572)
T ss_pred ccCCCCCcCCcccccccHHHHHHHHHhccccccceeehhhHHhccCCHHHHHHHHHHHHHHHHHHHHH----cc---CCC
Confidence 44555335567899999999988877777777777666665554223333333322322222222221 11 344
Q ss_pred chHHhHH-----HHhC---chhHHHHHHHHHHHHHhhHHHHHHHHHHHHhh---hhcC------CCCCC--chHHHHHHH
Q psy9204 157 GDYAYIL-----VAFG---ELPAFLRLWVALLIMRPTTQAIVALTFAQYAI---KPFF------PDSEL--PDRAVLLLA 217 (265)
Q Consensus 157 G~y~~~~-----~~~g---~~~gf~~gw~~~l~~~~~~~a~~~~~~~~~l~---~~~~------~~~~~--~~~~~~~i~ 217 (265)
..|+-.- ..|| ..+.-+.--.... +.-.+++...++-++ ...+ |+.-. ....-.+++
T Consensus 114 ~~yhIsFpv~sR~sFGiygS~~pIi~R~vma~----vwYg~~awiGgecV~lmL~si~~~~~hipntl~~~~~tt~e~i~ 189 (572)
T KOG2466|consen 114 SDYHISFPVLSRSSFGIYGSLWPIINRVVMAC----VWYGVNAWIGGECVQLMLKSIFKSFSHIPNTLGKPGTTTYEFIG 189 (572)
T ss_pred cccccceeeeeeeehhhhHhHHHHHHHHHHHH----hhhhhhhhhhhhhHHHHHHHHhhhhhcCccccCCCCCchHHHHH
Confidence 4444432 1222 2222222211111 122222222222222 1111 21111 011123444
Q ss_pred HHHHHHHH-HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy9204 218 AACLCVLT-AVNCMSVSWAMQVQTLFTVGKLVALFGIIAAGIGYL 261 (265)
Q Consensus 218 ~~~l~~~~-~in~~gvk~~~~i~~v~~~~~i~~~~~~ii~g~~~~ 261 (265)
..+.+++. ..-.++..-..++..+-.++...+.+.++|-.+...
T Consensus 190 FfIFwv~s~~~~~~~p~~ir~lf~~ka~~t~fA~~g~LIw~l~kA 234 (572)
T KOG2466|consen 190 FFIFWVASLPFYWFPPYKIRHLFTWKAVLTPFAAFGFLIWLLKKA 234 (572)
T ss_pred HHHHHHHhhheeeccHHHhhhHHHHHHhhhHHHHHHHHHHHHHhc
Confidence 44444443 455677788888888777777776666666655544
No 133
>COG1292 BetT Choline-glycine betaine transporter [Cell envelope biogenesis, outer membrane]
Probab=38.55 E-value=3.8e+02 Score=26.05 Aligned_cols=51 Identities=10% Similarity=0.030 Sum_probs=30.3
Q ss_pred CCchHHHHHHHHHHHHHHHHHHhhhh-hHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9204 207 ELPDRAVLLLAAACLCVLTAVNCMSV-SWAMQVQTLFTVGKLVALFGIIAAG 257 (265)
Q Consensus 207 ~~~~~~~~~i~~~~l~~~~~in~~gv-k~~~~i~~v~~~~~i~~~~~~ii~g 257 (265)
+...+.+..+..++.++.+.-...|+ |..+++.++-..+..+.++++.++|
T Consensus 226 p~~~~~q~~iI~vi~~~~~~S~~sGv~KGIr~LS~~n~~la~~lllfvli~G 277 (537)
T COG1292 226 PNSFAVQAIIIAVITALFTISVWSGLDKGIRVLSNINMVLAFLLLLFVLIVG 277 (537)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 33445555555555555666666665 6666666666666666666555555
No 134
>TIGR01197 nramp NRAMP (natural resistance-associated macrophage protein) metal ion transporters. This model describes the Nramp metal ion transporter family. Historically, in mammals these proteins have been functionally characterized as proteins involved in the host pathogen resistance, hence the name - NRAMP. At least two isoforms Nramp1 and Nramp2 have been identified. However the exact mechanism of pathogen resistance was unclear, until it was demonstrated by expression cloning and electrophysiological techniques that this protein was a metal ion transporter. It was also independently demonstrated that a microcytic anemia (mk) locus in mouse, encodes a metal ion transporter (DCT1 or Nramp2). The transporter has a broad range of substrate specificity that include Fe+2, Zn+2, Mn+2, Co+2, Cd+2, Cu+2, Ni+2 and Pb+2. The uptake of these metal ions is coupled to proton symport. Metal ions are essential cofactors in a number of biological process including, oxidative phosphorylation, gene
Probab=33.19 E-value=4e+02 Score=24.69 Aligned_cols=34 Identities=21% Similarity=0.059 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHhccccccC--CchHHhHHHHhCch
Q psy9204 136 LLSTIGALCYAELGTCISRS--GGDYAYILVAFGEL 169 (265)
Q Consensus 136 l~~~~~a~~~aEl~s~~P~~--GG~y~~~~~~~g~~ 169 (265)
+++.+.+..+-|++.+.-.. -+.-.-.++.++|+
T Consensus 42 lls~~~~~~~Q~~aaRlg~vTg~~l~~~~r~~~~~~ 77 (390)
T TIGR01197 42 LLSNIMALLLQRLCARLGVVTGLDLAEVCREHYPKV 77 (390)
T ss_pred HHHHHHHHHHHHHHHHheeecCCCHHHHHHHHCCCc
Confidence 46777788888888888753 44577788888873
No 135
>PRK03356 L-carnitine/gamma-butyrobetaine antiporter; Provisional
Probab=31.96 E-value=4.8e+02 Score=25.21 Aligned_cols=22 Identities=0% Similarity=0.067 Sum_probs=16.4
Q ss_pred ccccchhhhHHhhhccccceee
Q psy9204 89 GQRLVRLEGVSIIVGCIIGSGI 110 (265)
Q Consensus 89 ~r~l~~~~~~~l~i~~vig~gi 110 (265)
|.+++.++-++|.+++-+|.|+
T Consensus 83 kPefs~~sW~aMlf~aG~G~gl 104 (504)
T PRK03356 83 KPEFSTASWIFMMFASCTSAAV 104 (504)
T ss_pred CCCccchHHHHHHHHHhhhhhh
Confidence 4577888888888888777665
No 136
>PRK09928 choline transport protein BetT; Provisional
Probab=25.62 E-value=7e+02 Score=25.12 Aligned_cols=72 Identities=14% Similarity=0.033 Sum_probs=32.5
Q ss_pred HHHHHHHHHhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy9204 189 IVALTFAQYAIKPFFPDSELPDRAVLLLAAACLCVLTAVNCM-SVSWAMQVQTLFTVGKLVALFGIIAAGIGYL 261 (265)
Q Consensus 189 ~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~l~~~~~in~~-gvk~~~~i~~v~~~~~i~~~~~~ii~g~~~~ 261 (265)
+.++..++.......++.++|.|.....++++-++...+-.. |++..... .+.+.+-+..++++...++++.
T Consensus 429 S~s~Vla~lts~g~~~~~~pp~~~RifW~v~ig~la~~LL~~GGL~aLQt~-sii~alPf~~I~ll~~~sl~k~ 501 (679)
T PRK09928 429 SGALVLGNFTSKLKDINSDAPNWLRVFWSVAIGLLTLGMLMTNGISALQNT-TVIMGLPFSFVIFFVMAGLYKS 501 (679)
T ss_pred HHHHHHHHHHcCCCCCCCCCCcceeeHHHHHHHHHHHHHHHhcCHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444332222334566776666665554444444333 44433332 2333333444444455555543
No 137
>COG4145 PanF Na+/panthothenate symporter [Coenzyme metabolism]
Probab=22.34 E-value=6.5e+02 Score=23.60 Aligned_cols=72 Identities=8% Similarity=0.062 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHH-HHHHHHhcccccc------CCchHHhHHHH-hCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhh
Q psy9204 130 IWTVCGLLSTIG-ALCYAELGTCISR------SGGDYAYILVA-FGELPAFLRLWVALLIMRPTTQAIVALTFAQYAIKP 201 (265)
Q Consensus 130 ~~~i~~l~~~~~-a~~~aEl~s~~P~------~GG~y~~~~~~-~g~~~gf~~gw~~~l~~~~~~~a~~~~~~~~~l~~~ 201 (265)
+|++-+.+..+. -++..-++.++.. +=-...+.+++ =+++.-++.+....+ .+...+.+.....+..+...
T Consensus 73 gwvlLa~iqvp~~~l~lgvlgkk~~~~ar~~nAltI~D~l~~RY~s~fl~~las~~Lif-ff~~~m~~qfiGgarLlE~~ 151 (473)
T COG4145 73 GWVLLAMIQVPTVWLALGVLGKKFAILAREYNALTINDLLFARYQSRFLVWLASLSLIF-FFVGAMTVQFIGGARLLETA 151 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhCCeeHHHHHHHHhcchHHHHHHHHHHHH-HHHHHHHHHHhhHHHHHHHH
Confidence 465544454443 3344444443321 11234555544 467777787777776 66777777778888887754
Q ss_pred c
Q psy9204 202 F 202 (265)
Q Consensus 202 ~ 202 (265)
.
T Consensus 152 ~ 152 (473)
T COG4145 152 L 152 (473)
T ss_pred H
Confidence 4
No 138
>COG4146 Predicted symporter [General function prediction only]
Probab=22.26 E-value=6.6e+02 Score=23.61 Aligned_cols=107 Identities=13% Similarity=0.020 Sum_probs=62.2
Q ss_pred hHHhHHHHhCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhcC--C--CCCCchHHHHHHHHHHHHHHHHHHhhhhh
Q psy9204 158 DYAYILVAFGELPAFLRLWVALLIMRPTTQAIVALTFAQYAIKPFF--P--DSELPDRAVLLLAAACLCVLTAVNCMSVS 233 (265)
Q Consensus 158 ~y~~~~~~~g~~~gf~~gw~~~l~~~~~~~a~~~~~~~~~l~~~~~--~--~~~~~~~~~~~i~~~~l~~~~~in~~gvk 233 (265)
.-.+.+++|.+..-.+......+.+.........++.+-.+.+.+. . +.............+-++.+.+.-.-|.|
T Consensus 105 IPdFlE~RfD~~TR~Iis~lFLi~y~~~flPtvLYsGAla~nsiF~l~~v~~IS~g~~i~~~viaiG~~g~~Yai~GGLk 184 (571)
T COG4146 105 IPDFLEERFDKTTRMIISFLFLIAYGVCFLPTVLYSGALALNSIFHLGEVLQISHGAAIWLLVIAIGLAGILYAIIGGLK 184 (571)
T ss_pred chHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHhhhhHHHhhhhchHhhhCcCcchHHHHHHHHHHHHHHHHHHHcchh
Confidence 4577888888877777776666533333344444444444433221 0 11111122222233334556666677888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q psy9204 234 WAMQVQTLFTVGKLVALFGIIAAGIGYLGIG 264 (265)
Q Consensus 234 ~~~~i~~v~~~~~i~~~~~~ii~g~~~~~~g 264 (265)
..+--..+-.+..++.-+++=+.+++++++|
T Consensus 185 A~AvsDtiNgigLviGgLlvPifaLi~lG~G 215 (571)
T COG4146 185 AMAVSDTINGIGLVIGGLLVPIFALIALGKG 215 (571)
T ss_pred heeeccccchhhHhhhhHHHHHHHHHhhcCc
Confidence 8777777777777777777778888888766
No 139
>TIGR00912 2A0309 spore germination protein (amino acid permease). This model describes spore germination protein GerKB and paralogs from Bacillus subtilis, Clostridium tetani, and other known or predicted endospore-forming members of the Firmicutes (low-GC Gram positive bacteria). Members show some similarity to amino acid permeases.
Probab=21.87 E-value=5.7e+02 Score=22.73 Aligned_cols=45 Identities=18% Similarity=0.222 Sum_probs=31.6
Q ss_pred CCCCCCCCcCCCCChhHHHHHHH-hhhhccCCcccchhhhccccCCCC
Q psy9204 36 GSSNFDHAWDGNYDITKISLALY-SGLFAFGGWNYLNFVVDELQDPYN 82 (265)
Q Consensus 36 ~~~~f~~~f~~~~~~~~~~~a~~-~~~~~y~Gw~~~n~v~~e~k~p~~ 82 (265)
|.+|+.+.++. +..++..+.. ...|+|.||+......++.|||++
T Consensus 165 ~~~~l~P~~~~--g~~~~~~~~~~~~~~~f~g~~i~~~~~~~~~~~~~ 210 (359)
T TIGR00912 165 NIKNLLPVLEN--GLSPILKGAYPVVTFAFGEIEIFFLLFPLLSKKKK 210 (359)
T ss_pred cHHHccCcccc--CcHHHHhhhhHHhhhhhHHHHHHHHHHHHhCChhh
Confidence 44555544432 3445555555 788999999999999999988765
No 140
>KOG3660|consensus
Probab=20.76 E-value=8.5e+02 Score=24.29 Aligned_cols=46 Identities=15% Similarity=0.054 Sum_probs=33.8
Q ss_pred HHHHHHHHHH-HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9204 215 LLAAACLCVL-TAVNCMSVSWAMQVQTLFTVGKLVALFGIIAAGIGY 260 (265)
Q Consensus 215 ~i~~~~l~~~-~~in~~gvk~~~~i~~v~~~~~i~~~~~~ii~g~~~ 260 (265)
.+++.+.+++ .++-.+|+|.++|+..+...+-.+.++++.+-|+..
T Consensus 217 ~~~l~~~Wliv~~~i~KGvks~GKvvY~~a~fPyviL~iLliRgvTL 263 (629)
T KOG3660|consen 217 ALCLALAWLIVFFCIWKGVKSSGKVVYFTATFPYVILIVLLIRGVTL 263 (629)
T ss_pred HHHHHHHHHHHHHHHhhcccccCcEEEEEehhHHHHHHHHHHHHccC
Confidence 4444544444 445678999999999999888888888887777654
No 141
>PRK15015 carbon starvation protein A; Provisional
Probab=20.24 E-value=9e+02 Score=24.38 Aligned_cols=97 Identities=15% Similarity=0.194 Sum_probs=51.0
Q ss_pred HHhhhccccceeeecchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhcccccc-CCchHHhHHHHhCchhHHHHHH
Q psy9204 98 VSIIVGCIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTIGALCYAELGTCISR-SGGDYAYILVAFGELPAFLRLW 176 (265)
Q Consensus 98 ~~l~i~~vig~gi~~~~~~~~~~~g~~~~~i~~~~i~~l~~~~~a~~~aEl~s~~P~-~GG~y~~~~~~~g~~~gf~~gw 176 (265)
+.=-+.++.|.|-...|...++ -|- .....|++.+.+..-...=|.-+-....+ .-+.-..+++..||..+.+...
T Consensus 89 fGHHFasIAGAGPivGPvlAa~-~Gw--lP~~LWIl~G~vf~GaVhD~~~L~~S~R~~GrSig~ia~~~iG~~~~~lfli 165 (701)
T PRK15015 89 FGHHFAAIAGAGPLVGPVLAAQ-MGY--LPGMIWLLAGVVLAGAVQDFMVLFVSTRRDGRSLGELVKEEMGPTAGVIALV 165 (701)
T ss_pred hHHHHHHHhccCccHHHHHHHH-Hcc--hHHHHHHHHcceeechhhhhhheeeeecCCCccHHHHHHHHhhHHHHHHHHH
Confidence 3334555556666666644443 242 12234776665554444444444444443 3444567778899988877766
Q ss_pred HHHHHHHhhHHHHHHHHHHHHh
Q psy9204 177 VALLIMRPTTQAIVALTFAQYA 198 (265)
Q Consensus 177 ~~~l~~~~~~~a~~~~~~~~~l 198 (265)
..++ ......+..+...++.+
T Consensus 166 ~i~~-iliiviAvfalvvv~al 186 (701)
T PRK15015 166 ACFM-IMVIILAVLAMIVVKAL 186 (701)
T ss_pred HHHH-HHHHHHHHHHHHHHHHH
Confidence 5555 33334444444444433
No 142
>PF03839 Sec62: Translocation protein Sec62; InterPro: IPR004728 Members of the NSCC2 family have been sequenced from various yeast, fungal and animals species including Saccharomyces cerevisiae, Drosophila melanogaster and Homo sapiens. These proteins are the Sec62 proteins, believed to be associated with the Sec61 and Sec63 constituents of the general protein secretary systems of yeast microsomes. They are also the non-selective cation (NS) channels of the mammalian cytoplasmic membrane. The yeast Sec62 protein has been shown to be essential for cell growth. The mammalian NS channel proteins have been implicated in platelet derived growth factor(PGDF) dependent single channel current in fibroblasts. These channels are essentially closed in serum deprived tissue-culture cells and are specifically opened by exposure to PDGF. These channels are reported to exhibit equal selectivity for Na+, K+ and Cs+ with low permeability to Ca2+, and no permeability to anions.; GO: 0008565 protein transporter activity, 0015031 protein transport, 0016021 integral to membrane
Probab=20.07 E-value=3.7e+02 Score=22.90 Aligned_cols=6 Identities=17% Similarity=0.473 Sum_probs=2.8
Q ss_pred CchHHh
Q psy9204 156 GGDYAY 161 (265)
Q Consensus 156 GG~y~~ 161 (265)
.+.|.|
T Consensus 97 ~~~YvW 102 (224)
T PF03839_consen 97 DEYYVW 102 (224)
T ss_pred CeEEEE
Confidence 335555
Done!