Query psy9204
Match_columns 265
No_of_seqs 298 out of 1296
Neff 8.3
Searched_HMMs 29240
Date Fri Aug 16 21:34:35 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9204.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/9204hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3l1l_A Arginine/agmatine antip 99.8 4E-20 1.4E-24 170.5 15.0 169 87-261 5-173 (445)
2 3gia_A Uncharacterized protein 99.8 7.4E-19 2.5E-23 162.0 19.6 170 87-261 3-173 (444)
3 4djk_A Probable glutamate/gamm 99.8 1.2E-17 4E-22 156.7 15.6 169 86-262 7-180 (511)
4 2jln_A MHP1; hydantoin, transp 97.5 0.0035 1.2E-07 58.5 16.6 166 84-260 19-189 (501)
5 3l1l_A Arginine/agmatine antip 97.2 0.0086 3E-07 54.2 15.3 34 49-82 189-222 (445)
6 4djk_A Probable glutamate/gamm 95.2 0.83 2.8E-05 41.8 16.3 27 56-82 206-232 (511)
7 3gia_A Uncharacterized protein 93.5 0.75 2.6E-05 41.2 11.8 33 50-82 187-219 (444)
8 2xq2_A Sodium/glucose cotransp 92.5 4.9 0.00017 37.9 16.2 102 154-261 110-211 (593)
9 3dh4_A Sodium/glucose cotransp 92.4 2.4 8.3E-05 39.4 13.7 163 89-261 19-182 (530)
10 2wsw_A BCCT family betaine/car 36.0 2.6E+02 0.0089 25.7 14.4 22 89-110 88-109 (509)
11 2a65_A Leutaa, Na(+):neurotran 31.2 3.1E+02 0.011 25.1 16.2 48 211-258 166-214 (519)
12 4ain_A Glycine betaine transpo 25.2 1E+02 0.0035 28.6 5.6 24 88-111 92-115 (539)
No 1
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=99.83 E-value=4e-20 Score=170.46 Aligned_cols=169 Identities=21% Similarity=0.312 Sum_probs=145.9
Q ss_pred ccccccchhhhHHhhhccccceeeecchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhccccccCCchHHhHHHHh
Q psy9204 87 VTGQRLVRLEGVSIIVGCIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTIGALCYAELGTCISRSGGDYAYILVAF 166 (265)
Q Consensus 87 ~l~r~l~~~~~~~l~i~~vig~gi~~~~~~~~~~~g~~~~~i~~~~i~~l~~~~~a~~~aEl~s~~P~~GG~y~~~~~~~ 166 (265)
+.||+++.++..++.++.++|+|++..|+.+. .+|+ ..+++|++++++.++.+++++|+++++|++||.|.|+++.+
T Consensus 5 ~~~r~l~~~~~~~l~ig~~iG~Gif~~~~~~~-~~G~--~~~~~~li~~~~~~~~a~~~~el~~~~p~~Gg~y~~~~~~~ 81 (445)
T 3l1l_A 5 ADAHKVGLIPVTLMVSGAIMGSGVFLLPANLA-STGG--IAIYGWLVTIIGALGLSMVYAKMSFLDPSPGGSYAYARRCF 81 (445)
T ss_dssp --CCCBCHHHHHHHHHHHHCSSHHHHHHHHHH-HHCT--HHHHHHHHHHHHHHHHHHHHHHHHHHCCCTTTHHHHHHHHS
T ss_pred CCCCcccHHHHHHHHHHhHHhhhHHhhHHHHH-Hhhh--HHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCchhhHHhHc
Confidence 46789999999999999999999999988754 4454 36678999999999999999999999999999999999999
Q ss_pred CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Q psy9204 167 GELPAFLRLWVALLIMRPTTQAIVALTFAQYAIKPFFPDSELPDRAVLLLAAACLCVLTAVNCMSVSWAMQVQTLFTVGK 246 (265)
Q Consensus 167 g~~~gf~~gw~~~l~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~l~~~~~in~~gvk~~~~i~~v~~~~~ 246 (265)
||.+|++.+|.+++ .+....+.....+++++.. ++|..+ ++++..+++++++++++.+|++|+|..+|++.+.+.++
T Consensus 82 G~~~g~~~g~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~in~~g~~~~~~~~~~~~~~~ 158 (445)
T 3l1l_A 82 GPFLGYQTNVLYWL-ACWIGNIAMVVIGVGYLSY-FFPILK-DPWVLTITCVVVLWIFVLLNIVGPKMITRVQAVATVLA 158 (445)
T ss_dssp CHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHTTT-TCGGGG-SHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH-HCcccc-ccHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHH
Confidence 99999999999999 6677777888888888874 445432 34677888999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHh
Q psy9204 247 LVALFGIIAAGIGYL 261 (265)
Q Consensus 247 i~~~~~~ii~g~~~~ 261 (265)
++.++++++.++.+.
T Consensus 159 i~~~~~~~i~~~~~~ 173 (445)
T 3l1l_A 159 LIPIVGIAVFGWFWF 173 (445)
T ss_dssp HHHHHHHHHTTSTTC
T ss_pred HHHHHHHHHHHHHHh
Confidence 999988888776543
No 2
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C
Probab=99.82 E-value=7.4e-19 Score=162.04 Aligned_cols=170 Identities=21% Similarity=0.229 Sum_probs=148.2
Q ss_pred ccccccchhhhHHhhhccccceeeecchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhccccccCCchHHhHHHHh
Q psy9204 87 VTGQRLVRLEGVSIIVGCIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTIGALCYAELGTCISRSGGDYAYILVAF 166 (265)
Q Consensus 87 ~l~r~l~~~~~~~l~i~~vig~gi~~~~~~~~~~~g~~~~~i~~~~i~~l~~~~~a~~~aEl~s~~P~~GG~y~~~~~~~ 166 (265)
+.||+++.++..+++++.++|+|++..++.....+|+ ..+++|++++++.++.+++++|+++++|++||.|.|+++.+
T Consensus 3 ~~~r~l~~~~~~~l~~g~~iG~gi~~~~~~~~~~~G~--~~~~~~li~~~~~~~~~~~~~el~~~~P~~Gg~y~~~~~~~ 80 (444)
T 3gia_A 3 LKNKKLSLWEAVSMAVGVMIGASIFSIFGVGAKIAGR--NLPETFILSGIYALLVAYSYTKLGAKIVSNAGPIAFIHKAI 80 (444)
T ss_dssp CCCCCBCHHHHHHHHHHHHHHHHTTTSHHHHHHHHGG--GHHHHHHHHHHHHHHHHHHHHHHHTTCCCTTTHHHHHHHHH
T ss_pred ccCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc--HHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcHHHhHHHHh
Confidence 3578999999999999999999999999887777665 46678999999999999999999999999999999999999
Q ss_pred Cch-hHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Q psy9204 167 GEL-PAFLRLWVALLIMRPTTQAIVALTFAQYAIKPFFPDSELPDRAVLLLAAACLCVLTAVNCMSVSWAMQVQTLFTVG 245 (265)
Q Consensus 167 g~~-~gf~~gw~~~l~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~l~~~~~in~~gvk~~~~i~~v~~~~ 245 (265)
||. .+...+|.+++ .+....+..+..+++++.. .++. ..++++..+++.+++++++.+|++|+|..+|++.+.+.+
T Consensus 81 G~~~~~g~~~~~~~~-~~~~~~a~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~in~~g~~~~~~~~~~~~~~ 157 (444)
T 3gia_A 81 GDNIITGALSILLWM-SYVISIALFAKGFAGYFLP-LINA-PINTFNIAITEIGIVAFFTALNFFGSKAVGRAEFFIVLV 157 (444)
T ss_dssp CSSHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH-HTTC-CCCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH-HhCC-CCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 996 35556899988 7778888899999999886 4443 334566778889999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHh
Q psy9204 246 KLVALFGIIAAGIGYL 261 (265)
Q Consensus 246 ~i~~~~~~ii~g~~~~ 261 (265)
|++.++++++.++...
T Consensus 158 ~i~~~~~~ii~~~~~~ 173 (444)
T 3gia_A 158 KLLILGLFIFAGLITI 173 (444)
T ss_dssp HHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHc
Confidence 9999999999888764
No 3
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A
Probab=99.75 E-value=1.2e-17 Score=156.68 Aligned_cols=169 Identities=16% Similarity=0.170 Sum_probs=124.5
Q ss_pred cccccccchhhhHHhhhccccceeeecchHHHHHhcccchHHHHHHHHHHHHH-HHHHHHHHHhcc--ccccCCchHHhH
Q psy9204 86 PVTGQRLVRLEGVSIIVGCIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLS-TIGALCYAELGT--CISRSGGDYAYI 162 (265)
Q Consensus 86 ~~l~r~l~~~~~~~l~i~~vig~gi~~~~~~~~~~~g~~~~~i~~~~i~~l~~-~~~a~~~aEl~s--~~P~~GG~y~~~ 162 (265)
+++||+++.+++++++++.+++ ++..+. ....|+ ..++.|++++++. ++.+++++|+++ ++| +||.|+|+
T Consensus 7 ~~~~r~l~~~~~~~l~~~~~ig--~~~~~~--~~~~G~--~~~~~~~i~~~~~~l~~al~~ael~s~~~~P-~GG~y~~~ 79 (511)
T 4djk_A 7 TGKAKQLTLLGFFAITASMVMA--VYEYPT--FATSGF--SLVFFLLLGGILWFIPVGLCAAEMATVDGWE-EGGVFAWV 79 (511)
T ss_dssp -----CCCHHHHHHHTGGGGCC--GGGHHH--HHTTTT--HHHHHHHHHHHHTHHHHHHHHHHHHTTSCC----CHHHHH
T ss_pred CccCccccHHHHHHHHHHHHHh--hchhHH--HHhhHH--HHHHHHHHHHHHHHHHHHHHHHHHcccccCC-CCChhhhH
Confidence 4688999999999999999875 333332 233332 2333445555554 469999999999 999 99999999
Q ss_pred HHHhCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhc-CCCCCCchHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Q psy9204 163 LVAFGELPAFLRLWVALLIMRPTTQAIVALTFAQYAIKPF-FPDSELPDRAVLLLAAACLCVLTAVNCMSVSWAMQVQTL 241 (265)
Q Consensus 163 ~~~~g~~~gf~~gw~~~l~~~~~~~a~~~~~~~~~l~~~~-~~~~~~~~~~~~~i~~~~l~~~~~in~~gvk~~~~i~~v 241 (265)
++.+||++|++.+|.+++ .+....+......+.++...+ .|+.+.++|+..+++++++++++.+|++|+|..+|++++
T Consensus 80 ~~~~g~~~g~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~in~~g~~~~~~~~~~ 158 (511)
T 4djk_A 80 SNTLGPRWGFAAISFGYL-QIAIGFIPMLYFVLGALSYILKWPALNEDPITKTIAALIILWALALTQFGGTKYTARIAKV 158 (511)
T ss_dssp HHHHCHHHHHHHHHHHHH-HHHHHTHHHHHHHHHHHHTTTTCGGGTSCSSHHHHHHHHHHHHHHHHHHTCSSSHHHHTHH
T ss_pred HhhcCchHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhcCcccccCcHHHHHHHHHHHHHHHHHHHhChHHHHHHHHH
Confidence 999999999999999999 666666666667777765432 456666678888999999999999999999999999999
Q ss_pred HHHHHHH-HHHHHHHHHHHHhh
Q psy9204 242 FTVGKLV-ALFGIIAAGIGYLG 262 (265)
Q Consensus 242 ~~~~~i~-~~~~~ii~g~~~~~ 262 (265)
.+.++++ .++++++.++....
T Consensus 159 ~~~~~~~~~~~~~i~~~~~~~~ 180 (511)
T 4djk_A 159 GFFAGILLPAFILIALAAIYLH 180 (511)
T ss_dssp HHHHTTHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 9888654 46667777776543
No 4
>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A
Probab=97.52 E-value=0.0035 Score=58.49 Aligned_cols=166 Identities=10% Similarity=-0.043 Sum_probs=95.5
Q ss_pred CccccccccchhhhHHhhhccccceeeecchHHHHHhcc-cchHHHHHHHHHHHHHHHHHHHHHHhccccccCCc-hHHh
Q psy9204 84 VLPVTGQRLVRLEGVSIIVGCIIGSGIFVSPAGVLAETQ-SVGLSIVIWTVCGLLSTIGALCYAELGTCISRSGG-DYAY 161 (265)
Q Consensus 84 ~~~~l~r~l~~~~~~~l~i~~vig~gi~~~~~~~~~~~g-~~~~~i~~~~i~~l~~~~~a~~~aEl~s~~P~~GG-~y~~ 161 (265)
|.|+-+|+.+.++...+=++.....+.+....... . | +...++++-+++.++..+.....+.++ |+.|- +...
T Consensus 19 pvp~~~R~~~~~~~~~~W~g~~~~i~~~~~Ga~~~-~-GLs~~~a~lai~lG~li~~~~~~l~~~~G---~~~Gl~~~v~ 93 (501)
T 2jln_A 19 PTRYAERSVGPFSLAAIWFAMAIQVAIFIAAGQMT-S-SFQVWQVIVAIAAGCTIAVILLFFTQSAA---IRWGINFTVA 93 (501)
T ss_dssp CCCGGGCCBCHHHHHHHHHHHHCSTHHHHHHHHHT-T-TSCHHHHHHHHHHHHHHHHHHHHHHTHHH---HHHCCCHHHH
T ss_pred CCChhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHh-c-CcCHHHHHHHHHHHHHHHHHHHHHHhHHH---hhcCCChhhh
Confidence 34556677888888877666654444333322222 2 3 222233333333333333333333333 33333 4446
Q ss_pred HHHHhCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhc---CCCCCCchHHHHHHHHHHHHHHHHHHhhhhhHHHHH
Q psy9204 162 ILVAFGELPAFLRLWVALLIMRPTTQAIVALTFAQYAIKPF---FPDSELPDRAVLLLAAACLCVLTAVNCMSVSWAMQV 238 (265)
Q Consensus 162 ~~~~~g~~~gf~~gw~~~l~~~~~~~a~~~~~~~~~l~~~~---~~~~~~~~~~~~~i~~~~l~~~~~in~~gvk~~~~i 238 (265)
.+..||++.+.+......+ ......+.+....++.+...+ + +.+ + ..+..+++.++...+.++|.|...++
T Consensus 94 ~R~~FG~~Gs~i~~ll~~i-~~igw~~v~~~~gg~al~~~~~~~~-g~~-~---~~v~~~i~~~l~~~~~~~G~~~i~~~ 167 (501)
T 2jln_A 94 ARMPFGIRGSLIPITLKAL-LSLFWFGFQTWLGALALDEITRLLT-GFT-N---LPLWIVIFGAIQVVTTFYGITFIRWM 167 (501)
T ss_dssp TTTTSCTTTTHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH-CCC-C---HHHHHHHHHHHHHHHHTTHHHHHHHH
T ss_pred hHhhcchhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhc-Ccc-h---HHHHHHHHHHHHHHHHHhCHHHHHHH
Confidence 7788999988888877766 455555666655555554322 1 222 1 12333445556777889999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy9204 239 QTLFTVGKLVALFGIIAAGIGY 260 (265)
Q Consensus 239 ~~v~~~~~i~~~~~~ii~g~~~ 260 (265)
+.+...+.++.++.+.+..+..
T Consensus 168 ~~~~~p~~~i~~i~~~~~~l~~ 189 (501)
T 2jln_A 168 NVFASPVLLAMGVYMVYLMLDG 189 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 9999988888777766655443
No 5
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=97.24 E-value=0.0086 Score=54.20 Aligned_cols=34 Identities=18% Similarity=0.260 Sum_probs=28.7
Q ss_pred ChhHHHHHHHhhhhccCCcccchhhhccccCCCC
Q psy9204 49 DITKISLALYSGLFAFGGWNYLNFVVDELQDPYN 82 (265)
Q Consensus 49 ~~~~~~~a~~~~~~~y~Gw~~~n~v~~e~k~p~~ 82 (265)
+..++..++..+.|+|.||+......||.|||+|
T Consensus 189 ~~~~~~~~~~~~~~af~G~e~~~~~~~e~k~p~r 222 (445)
T 3l1l_A 189 TFGAIQSTLNVTLWSFIGVESASVAAGVVKNPKR 222 (445)
T ss_dssp ----HHHHHHHHHHTTTTTTHHHHGGGGBSSHHH
T ss_pred cHHHHHHHHHHHHHHHHhHHHHHHHHHHhcCccc
Confidence 3567888999999999999999999999999987
No 6
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A
Probab=95.20 E-value=0.83 Score=41.78 Aligned_cols=27 Identities=15% Similarity=0.234 Sum_probs=24.8
Q ss_pred HHHhhhhccCCcccchhhhccccCCCC
Q psy9204 56 ALYSGLFAFGGWNYLNFVVDELQDPYN 82 (265)
Q Consensus 56 a~~~~~~~y~Gw~~~n~v~~e~k~p~~ 82 (265)
++..+.|+|.||+....+.||.|||+|
T Consensus 206 ~~~~~~~a~~G~e~~~~~a~E~k~P~k 232 (511)
T 4djk_A 206 VFVAFILSYMGVEASATHVNEMSNPGR 232 (511)
T ss_dssp THHHHHHHHTTGGGGTGGGSSSSCCTT
T ss_pred HHHHHHHHHhhHHHHHHHHHhccCccc
Confidence 466779999999999999999999998
No 7
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C
Probab=93.54 E-value=0.75 Score=41.23 Aligned_cols=33 Identities=9% Similarity=0.293 Sum_probs=29.3
Q ss_pred hhHHHHHHHhhhhccCCcccchhhhccccCCCC
Q psy9204 50 ITKISLALYSGLFAFGGWNYLNFVVDELQDPYN 82 (265)
Q Consensus 50 ~~~~~~a~~~~~~~y~Gw~~~n~v~~e~k~p~~ 82 (265)
+.++..++..+.|+|.|++......||.|||+|
T Consensus 187 ~~~~~~~~~~~~~a~~G~e~~~~~~~e~k~P~r 219 (444)
T 3gia_A 187 VSGMIFASAIFFLSYMGFGVITNASEHIENPKK 219 (444)
T ss_dssp HHHHHHHHHHGGGGGTHHHHHHTTGGGBSSHHH
T ss_pred hHHHHHHHHHHHHHHHhHHHHHHHHHHccCccc
Confidence 446777888889999999999999999999987
No 8
>2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats, LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus} PDB: 2xq2_B 2kpe_A
Probab=92.47 E-value=4.9 Score=37.86 Aligned_cols=102 Identities=7% Similarity=-0.089 Sum_probs=53.7
Q ss_pred cCCchHHhHHHHhCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHhhhhh
Q psy9204 154 RSGGDYAYILVAFGELPAFLRLWVALLIMRPTTQAIVALTFAQYAIKPFFPDSELPDRAVLLLAAACLCVLTAVNCMSVS 233 (265)
Q Consensus 154 ~~GG~y~~~~~~~g~~~gf~~gw~~~l~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~l~~~~~in~~gvk 233 (265)
+.-..+.|.+++||+....+......+.......+......+..+.. +.+ .+.+. .+.+..++...+....|.|
T Consensus 110 ~~~T~~e~l~~Rfg~~~~~~~ai~~l~~~~~~~~~~~l~~~~~~l~~-~~G---i~~~~--~i~i~~~i~~~Yt~~GGl~ 183 (593)
T 2xq2_A 110 GIYTIPEFVEKRFNKKLKTILAVFWISLYIFVNLTSVLYLGGLALET-ILG---IPLMY--SILGLALFALVYSIYGGLS 183 (593)
T ss_dssp TCCSHHHHHHHHTCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHH-HHC---CCHHH--HHHHHHHHHHHHHHTTC--
T ss_pred CCCCcHHHHHHHccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcC---ccHHH--HHHHHHHHHHHHHHhcchH
Confidence 34457999999999987766654433312222333333344444443 222 12222 2222333445566667788
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy9204 234 WAMQVQTLFTVGKLVALFGIIAAGIGYL 261 (265)
Q Consensus 234 ~~~~i~~v~~~~~i~~~~~~ii~g~~~~ 261 (265)
...+.+.+=.+++++..+++.+.++...
T Consensus 184 av~~TD~iQ~iiml~~~l~v~~~~l~~~ 211 (593)
T 2xq2_A 184 AVVWTDVIQVFFLVLGGFMTTYMAVSFI 211 (593)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 7777777767777766666655555443
No 9
>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus}
Probab=92.36 E-value=2.4 Score=39.38 Aligned_cols=163 Identities=8% Similarity=-0.036 Sum_probs=71.8
Q ss_pred ccccchhhhHHhhhccccceeeec-chHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhccccccCCchHHhHHHHhC
Q psy9204 89 GQRLVRLEGVSIIVGCIIGSGIFV-SPAGVLAETQSVGLSIVIWTVCGLLSTIGALCYAELGTCISRSGGDYAYILVAFG 167 (265)
Q Consensus 89 ~r~l~~~~~~~l~i~~vig~gi~~-~~~~~~~~~g~~~~~i~~~~i~~l~~~~~a~~~aEl~s~~P~~GG~y~~~~~~~g 167 (265)
.|+++.+.......++.++...+. .++..+. .|-.. ....|.. .+...+.+..+...-.+. +.-..+.|.+++||
T Consensus 19 GR~l~~~~~~~s~~at~~Sa~~~lG~~g~~y~-~G~~~-~~~~~~~-~~~~~i~~~~~~p~~~~~-~~~T~~e~l~~Rfg 94 (530)
T 3dh4_A 19 GKSLPWWAVGASLIAANISAEQFIGMSGSGYS-IGLAI-ASYEWMS-AITLIIVGKYFLPIFIEK-GIYTIPEFVEKRFN 94 (530)
T ss_dssp CSCCCHHHHHHHHHHHHCSHHHHTHHHHHHHH-TCGGG-HHHHHHH-HHHHHHHHHHTHHHHHHT-TCCSHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-hChHH-HHHHHHH-HHHHHHHHHHHHHHHHHc-CCccHHHHHHHHcC
Confidence 567777776555555544433333 3444333 34221 1122221 112222233333322222 34457899999999
Q ss_pred chhHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Q psy9204 168 ELPAFLRLWVALLIMRPTTQAIVALTFAQYAIKPFFPDSELPDRAVLLLAAACLCVLTAVNCMSVSWAMQVQTLFTVGKL 247 (265)
Q Consensus 168 ~~~gf~~gw~~~l~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~l~~~~~in~~gvk~~~~i~~v~~~~~i 247 (265)
+....+.+....+.+.....+......+..+.. +++ .+.+.. +.+..++...+....|.|...+.+.+-.++.+
T Consensus 95 ~~~~~~~a~~~l~~~~~~~~~~~l~~~~~~~~~-~~G---i~~~~~--i~i~~~i~~~Yt~~GGl~aV~~TD~iQ~~im~ 168 (530)
T 3dh4_A 95 KKLKTILAVFWISLYIFVNLTSVLYLGGLALET-ILG---IPLMYS--ILGLALFALVYSIYGGLSAVVWTDVIQVFFLV 168 (530)
T ss_dssp HHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHH-HTT---CCHHHH--HHHHHHHHHHTTC------CCSHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhC---CCHHHH--HHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 987776665443312222333333333444443 322 222222 22222223333444567766666666666666
Q ss_pred HHHHHHHHHHHHHh
Q psy9204 248 VALFGIIAAGIGYL 261 (265)
Q Consensus 248 ~~~~~~ii~g~~~~ 261 (265)
+..+++.+.++...
T Consensus 169 ~g~~~v~~~~~~~~ 182 (530)
T 3dh4_A 169 LGGFMTTYMAVSFI 182 (530)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc
Confidence 65555555555443
No 10
>2wsw_A BCCT family betaine/carnitine/choline transporter; transport protein, SD methionine, membrane protein; HET: CM5 1PE; 2.29A {Proteus mirabilis} PDB: 2wsx_A* 3hfx_A*
Probab=36.05 E-value=2.6e+02 Score=25.69 Aligned_cols=22 Identities=0% Similarity=0.067 Sum_probs=15.7
Q ss_pred ccccchhhhHHhhhccccceee
Q psy9204 89 GQRLVRLEGVSIIVGCIIGSGI 110 (265)
Q Consensus 89 ~r~l~~~~~~~l~i~~vig~gi 110 (265)
|.+.+.++-++|.+++-+|.|+
T Consensus 88 kPefs~~sW~aMlF~aGmGiGl 109 (509)
T 2wsw_A 88 KPEFSTASWIFMMFASCTSAAV 109 (509)
T ss_dssp CCSSCHHHHHHHHHHHTCCHHH
T ss_pred CCCCccchHHHHHHHHhhhhHH
Confidence 3467778888888887666654
No 11
>2a65_A Leutaa, Na(+):neurotransmitter symporter (SNF family); membrane protein, transport protein; HET: BOG; 1.65A {Aquifex aeolicus} SCOP: f.54.1.1 PDB: 2q6h_A* 2q72_A* 2qb4_A* 2qei_A* 3f3a_A* 3f3c_A* 3f3d_A* 3f3e_A* 3f48_A* 3f4i_A* 3f4j_A* 3usg_A* 3usi_A 3usj_A 3usk_A 3usl_A* 3usm_A* 3uso_A 3usp_A* 3qs5_A* ...
Probab=31.16 E-value=3.1e+02 Score=25.13 Aligned_cols=48 Identities=0% Similarity=-0.074 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhh-hHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9204 211 RAVLLLAAACLCVLTAVNCMSV-SWAMQVQTLFTVGKLVALFGIIAAGI 258 (265)
Q Consensus 211 ~~~~~i~~~~l~~~~~in~~gv-k~~~~i~~v~~~~~i~~~~~~ii~g~ 258 (265)
|...+.-.+..++...+..+|+ |..+|++.++..+..+.++++.+-++
T Consensus 166 ~~~~~~~~~~w~i~~~ii~~Gv~kgiek~~~~~mp~l~vlliiL~ir~l 214 (519)
T 2a65_A 166 LFAYIVFLITMFINVSILIRGISKGIERFAKIAMPTLFILAVFLVIRVF 214 (519)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCTTTTHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4444444555666677788899 78999999998888877777766544
No 12
>4ain_A Glycine betaine transporter BETP; membrane protein, chemosensor and osmosensor, secondary TRAN sodium coupled transport; HET: FLC CM5; 3.10A {Corynebacterium glutamicum} PDB: 4doj_A* 2w8a_A 2wit_A 3p03_A
Probab=25.20 E-value=1e+02 Score=28.61 Aligned_cols=24 Identities=13% Similarity=0.329 Sum_probs=17.7
Q ss_pred cccccchhhhHHhhhccccceeee
Q psy9204 88 TGQRLVRLEGVSIIVGCIIGSGIF 111 (265)
Q Consensus 88 l~r~l~~~~~~~l~i~~vig~gi~ 111 (265)
-|.+++.++-++|.+++-+|.|+.
T Consensus 92 ~kPefS~~sW~aMlF~AGmGiGl~ 115 (539)
T 4ain_A 92 EAPEFRTVSWISMMFAAGMGIGLM 115 (539)
T ss_dssp CCCSSCHHHHHHHHHTTSCCTHHH
T ss_pred CCCCCcchHHHHHHHHHhhcchhe
Confidence 345788888888888887776653
Done!