Query psy9204
Match_columns 265
No_of_seqs 298 out of 1296
Neff 8.3
Searched_HMMs 13730
Date Fri Aug 16 21:34:41 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9204.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/9204hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2a65a1 f.54.1.1 (A:5-513) Na( 6.8 5.7E+02 0.042 20.6 16.4 38 218-255 169-207 (509)
2 d1eaka3 g.14.1.2 (A:217-277) G 4.9 1.4E+02 0.011 17.3 1.4 19 9-27 33-53 (61)
3 d1e88a2 g.14.1.2 (A:102-160) F 4.8 90 0.0066 18.2 0.4 19 9-27 31-51 (59)
4 d1eaka4 g.14.1.2 (A:278-335) G 4.5 1.6E+02 0.012 16.9 1.5 18 10-27 31-50 (58)
5 d1h8pa2 g.14.1.2 (A:68-109) PD 4.4 94 0.0069 16.7 0.2 10 18-27 28-37 (42)
6 d1eaka5 g.14.1.2 (A:336-393) G 4.3 1.1E+02 0.0078 17.7 0.5 19 9-27 30-50 (58)
7 d2axte1 f.23.38.1 (E:3-84) Cyt 4.1 3.1E+02 0.023 16.6 2.6 20 245-264 20-39 (82)
8 d1l6ja5 g.14.1.2 (A:332-390) G 3.3 1.5E+02 0.011 17.2 0.4 19 9-27 32-52 (59)
9 d1l6ja3 g.14.1.2 (A:216-274) G 3.2 1.5E+02 0.011 17.1 0.4 19 9-27 31-51 (59)
10 d1ogmx1 b.133.1.1 (X:3-201) De 2.9 1.7E+02 0.013 20.7 0.6 21 8-28 4-24 (199)
No 1
>d2a65a1 f.54.1.1 (A:5-513) Na(+):neurotransmitter symporter homologue LeuT {Aquifex aeolicus [TaxId: 63363]}
Probab=6.82 E-value=5.7e+02 Score=20.57 Aligned_cols=38 Identities=0% Similarity=-0.051 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHhhhh-hHHHHHHHHHHHHHHHHHHHHHH
Q psy9204 218 AACLCVLTAVNCMSV-SWAMQVQTLFTVGKLVALFGIIA 255 (265)
Q Consensus 218 ~~~l~~~~~in~~gv-k~~~~i~~v~~~~~i~~~~~~ii 255 (265)
.+.+++...+..+|+ |...+..+++.....++.+++.+
T Consensus 169 ~~~~~i~~~i~~~gi~kGi~~~~kv~~~~l~~~~~~l~i 207 (509)
T d2a65a1 169 LITMFINVSILIRGISKGIERFAKIAMPTLFILAVFLVI 207 (509)
T ss_dssp HHHHHHHHHHHTTCTTTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHH
Confidence 344555555666665 45566666655555444444433
No 2
>d1eaka3 g.14.1.2 (A:217-277) Gelatinase A (MMP-2) type II modules {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.85 E-value=1.4e+02 Score=17.31 Aligned_cols=19 Identities=16% Similarity=0.022 Sum_probs=11.7
Q ss_pred ecCCCCCCc--CCCCCcccee
Q psy9204 9 TEGSSNFDH--AWDGNYDITK 27 (265)
Q Consensus 9 ~~~~~~~~~--~~~~~~~~~~ 27 (265)
+||+.+.-. +.|.|||..+
T Consensus 33 ~~g~~~~~~WCatt~~yd~d~ 53 (61)
T d1eaka3 33 DTGRSDGFLWCSTTYNFEKDG 53 (61)
T ss_dssp CTTCSSCCCEEESSSBTTTSC
T ss_pred cCCCCCCccCcCCccccccCC
Confidence 355554433 6788888754
No 3
>d1e88a2 g.14.1.2 (A:102-160) Fibronectin {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.80 E-value=90 Score=18.16 Aligned_cols=19 Identities=26% Similarity=0.370 Sum_probs=11.4
Q ss_pred ecCCCCCCc--CCCCCcccee
Q psy9204 9 TEGSSNFDH--AWDGNYDITK 27 (265)
Q Consensus 9 ~~~~~~~~~--~~~~~~~~~~ 27 (265)
+||+.+.-. +.+.|||..+
T Consensus 31 ~~g~~~~~~WCaTT~nyd~d~ 51 (59)
T d1e88a2 31 SEGRRDNMKWCGTTQNYDADQ 51 (59)
T ss_dssp CTTCCSSCCEEESSTBHHHHC
T ss_pred CCCCCCCcCCcCCccccccCC
Confidence 355554333 6688888654
No 4
>d1eaka4 g.14.1.2 (A:278-335) Gelatinase A (MMP-2) type II modules {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.55 E-value=1.6e+02 Score=16.86 Aligned_cols=18 Identities=28% Similarity=0.335 Sum_probs=10.9
Q ss_pred cCCCCCCc--CCCCCcccee
Q psy9204 10 EGSSNFDH--AWDGNYDITK 27 (265)
Q Consensus 10 ~~~~~~~~--~~~~~~~~~~ 27 (265)
||+.+... +.+.|||..+
T Consensus 31 ~~~~~~~~WCaTt~nyd~d~ 50 (58)
T d1eaka4 31 EGRTDGYRWCGTTEDYDRDK 50 (58)
T ss_dssp TTCSSCCCEEESSSCTTTSC
T ss_pred CCCCCCccCcCCccccCcCC
Confidence 55544333 6688888654
No 5
>d1h8pa2 g.14.1.2 (A:68-109) PDC-109, collagen-binding type II domain {Cow (Bos taurus) [TaxId: 9913]}
Probab=4.36 E-value=94 Score=16.68 Aligned_cols=10 Identities=30% Similarity=0.541 Sum_probs=7.5
Q ss_pred CCCCCcccee
Q psy9204 18 AWDGNYDITK 27 (265)
Q Consensus 18 ~~~~~~~~~~ 27 (265)
+.|.|||..+
T Consensus 28 att~nyd~d~ 37 (42)
T d1h8pa2 28 SLSPNYDKDR 37 (42)
T ss_dssp ESSSBHHHHC
T ss_pred CcccccccCC
Confidence 6789998654
No 6
>d1eaka5 g.14.1.2 (A:336-393) Gelatinase A (MMP-2) type II modules {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.34 E-value=1.1e+02 Score=17.72 Aligned_cols=19 Identities=32% Similarity=0.368 Sum_probs=12.0
Q ss_pred ecCCCCCCc--CCCCCcccee
Q psy9204 9 TEGSSNFDH--AWDGNYDITK 27 (265)
Q Consensus 9 ~~~~~~~~~--~~~~~~~~~~ 27 (265)
+||+.+... +.+.|||..+
T Consensus 30 ~~~~~~~~~WCatt~nyd~d~ 50 (58)
T d1eaka5 30 SAGRSDGKMWCATTANYDDDR 50 (58)
T ss_dssp CTTCSSSCCEEESSSCHHHHC
T ss_pred cCCCCCCccCcCcccccccCC
Confidence 356555444 7788998654
No 7
>d2axte1 f.23.38.1 (E:3-84) Cytochrome b559 subunit alpha, PsbE {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=4.06 E-value=3.1e+02 Score=16.64 Aligned_cols=20 Identities=15% Similarity=0.273 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHhhcC
Q psy9204 245 GKLVALFGIIAAGIGYLGIG 264 (265)
Q Consensus 245 ~~i~~~~~~ii~g~~~~~~g 264 (265)
++.+.+-.+.++|+.++.+|
T Consensus 20 IHsiTIPslFiaGwlFVstG 39 (82)
T d2axte1 20 IHSITIPALFIAGWLFVSTG 39 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHTT
T ss_pred EEeecccHHHHhhhhheecc
Confidence 44444555556666665555
No 8
>d1l6ja5 g.14.1.2 (A:332-390) Gelatinase B (MMP-9) type II modules {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.30 E-value=1.5e+02 Score=17.18 Aligned_cols=19 Identities=32% Similarity=0.370 Sum_probs=11.5
Q ss_pred ecCCCCCCc--CCCCCcccee
Q psy9204 9 TEGSSNFDH--AWDGNYDITK 27 (265)
Q Consensus 9 ~~~~~~~~~--~~~~~~~~~~ 27 (265)
+||+.+--. +.+.|||..+
T Consensus 32 ~~g~~~~~~WCatT~nyd~d~ 52 (59)
T d1l6ja5 32 SEGRGDGRLWCATTSNFDSDK 52 (59)
T ss_dssp CTTCSSCCCEEESSSBHHHHC
T ss_pred CCCCCCCccCcCcccccCCCC
Confidence 355544433 7788998654
No 9
>d1l6ja3 g.14.1.2 (A:216-274) Gelatinase B (MMP-9) type II modules {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.16 E-value=1.5e+02 Score=17.06 Aligned_cols=19 Identities=32% Similarity=0.352 Sum_probs=10.9
Q ss_pred ecCCCCCCc--CCCCCcccee
Q psy9204 9 TEGSSNFDH--AWDGNYDITK 27 (265)
Q Consensus 9 ~~~~~~~~~--~~~~~~~~~~ 27 (265)
+||+.+... +-+.|||..+
T Consensus 31 ~~~~~~~~~WCaTT~nyd~d~ 51 (59)
T d1l6ja3 31 TDGRSDGLPWCSTTANYDTDD 51 (59)
T ss_dssp CTTCSSCCCEEESSSBHHHHC
T ss_pred cCCCCCCcCEeCcccccccCC
Confidence 355544433 6678887653
No 10
>d1ogmx1 b.133.1.1 (X:3-201) Dextranase, N-terminal domain {Penicillium minioluteum [TaxId: 28574]}
Probab=2.94 E-value=1.7e+02 Score=20.74 Aligned_cols=21 Identities=19% Similarity=0.294 Sum_probs=14.9
Q ss_pred eecCCCCCCcCCCCCccceeE
Q psy9204 8 FTEGSSNFDHAWDGNYDITKI 28 (265)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~ 28 (265)
+|.-|.++-|-|.||+++|..
T Consensus 4 ~t~~g~~l~TWWHd~geiNt~ 24 (199)
T d1ogmx1 4 NTHCGADFCTWWHDSGEINTQ 24 (199)
T ss_dssp CCCBSSSEECCCCTTEECCSS
T ss_pred ccccCccceeeEecCceecCC
Confidence 455677777788888887754
Done!