RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy9204
(265 letters)
>gnl|CDD|233179 TIGR00911, 2A0308, L-type amino acid transporter. [Transport and
binding proteins, Amino acids, peptides and amines].
Length = 501
Score = 215 bits (549), Expect = 6e-67
Identities = 100/179 (55%), Positives = 127/179 (70%), Gaps = 1/179 (0%)
Query: 87 VTGQRLVR-LEGVSIIVGCIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTIGALCY 145
V ++ + L GV IIVG IIGSGIFVSP GVL SVGL++++W VCG+ S +GAL Y
Sbjct: 38 VALKKEITLLSGVGIIVGTIIGSGIFVSPKGVLKNAGSVGLALIMWAVCGIFSIVGALVY 97
Query: 146 AELGTCISRSGGDYAYILVAFGELPAFLRLWVALLIMRPTTQAIVALTFAQYAIKPFFPD 205
AELGT I +SGG+Y YIL FG L AFLRLW+ LL++RP +QA+ AL FA Y + P FPD
Sbjct: 98 AELGTTIPKSGGEYNYILEVFGPLLAFLRLWIELLVIRPGSQAVNALNFAIYILTPVFPD 157
Query: 206 SELPDRAVLLLAAACLCVLTAVNCMSVSWAMQVQTLFTVGKLVALFGIIAAGIGYLGIG 264
E+P+ A+ L+A C+ +LT VNC+SV WA +VQ +FT KL+AL II G LG G
Sbjct: 158 CEVPEWAIRLVAVLCVLLLTLVNCLSVKWATRVQDIFTACKLLALLLIIITGWVQLGKG 216
Score = 50.9 bits (122), Expect = 2e-07
Identities = 23/46 (50%), Positives = 33/46 (71%), Gaps = 1/46 (2%)
Query: 37 SSNFDHAWDG-NYDITKISLALYSGLFAFGGWNYLNFVVDELQDPY 81
S N +A++G I LA YSG++A+GGWNYLNFV +E+++PY
Sbjct: 220 SLNPKNAFEGTETSAGGIVLAFYSGIWAYGGWNYLNFVTEEVKNPY 265
>gnl|CDD|222193 pfam13520, AA_permease_2, Amino acid permease.
Length = 425
Score = 70.8 bits (174), Expect = 5e-14
Identities = 50/166 (30%), Positives = 76/166 (45%), Gaps = 5/166 (3%)
Query: 100 IIVGCIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTIGALCYAELGTCISRSGGDY 159
+++G IIGSGIFV+P L + + W + S AL YAEL + R+GG Y
Sbjct: 9 LVIGSIIGSGIFVTP---LIASAGAAAILWGWIAALIFSLAVALVYAELSSAFPRNGGIY 65
Query: 160 AYILVAFGELPAFLRLWVALLIMRPTTQAIVALTFAQYAIKPFFPDSELPDRAVLLLAAA 219
++ AFG+ AF+ W L + ++ AQY + FFPD +A A
Sbjct: 66 VWLKNAFGKPVAFIAAWFNWLAYILGLASSSSV-AAQYLLSAFFPDLVGNTWLTYGIAIA 124
Query: 220 CLCVLTAVNCMSVSWAMQVQT-LFTVGKLVALFGIIAAGIGYLGIG 264
L + +N + + ++Q L V L+ L II G+ G
Sbjct: 125 ILIIFALINIRGIKESAKIQNILGIVKLLLPLILIILLGLVLALGG 170
>gnl|CDD|223605 COG0531, PotE, Amino acid transporters [Amino acid transport and
metabolism].
Length = 466
Score = 68.7 bits (168), Expect = 3e-13
Identities = 48/170 (28%), Positives = 79/170 (46%), Gaps = 6/170 (3%)
Query: 98 VSIIVGCIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTIGALCYAELGTCISRSGG 157
++ VG +IGSGIF P +I+ W + G++ AL YAEL + I +GG
Sbjct: 21 TALGVGSMIGSGIFALPGSAAGLA---PAAILAWLIAGIIILFLALSYAELSSAIPSAGG 77
Query: 158 DYAYILVAFGELPAFLRLWVALLIMRPTTQAIVALTFAQY--AIKPFFPDSELPDRAVLL 215
YAY A G FL W+ LL A +A+ A Y + P + ++L
Sbjct: 78 AYAYAKRALGPRLGFLAGWLYLLAY-VIALAAIAIGAASYLSYLFPGPGLLSIGPLLIIL 136
Query: 216 LAAACLCVLTAVNCMSVSWAMQVQTLFTVGKLVALFGIIAAGIGYLGIGL 265
+A A + +LT +N + + ++ ++ T+ K++ L I G+ G
Sbjct: 137 IALALIALLTLLNLRGIKASAKINSIITILKIIILLIFIILGLFAFGFSN 186
>gnl|CDD|183096 PRK11357, frlA, putative fructoselysine transporter; Provisional.
Length = 445
Score = 63.3 bits (154), Expect = 2e-11
Identities = 45/164 (27%), Positives = 71/164 (43%), Gaps = 4/164 (2%)
Query: 98 VSIIVGCIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTIGALCYAELGTCISRSGG 157
++I VG +GSGIFVS V + L+++ + + GL+ YAEL T +G
Sbjct: 16 LAIAVGTTVGSGIFVSVGEVAKAAGTPWLTVLAFVIGGLIVIPQMCVYAELSTAYPENGA 75
Query: 158 DYAYILVAFGELPAFLRLWVALLIMRPTTQAIVALTFAQYAIKPFFPDSELPDRAVLLLA 217
DY Y+ A AFL W + + +I+AL + P L +A
Sbjct: 76 DYVYLKNAGSRPLAFLSGWASFWANDAPSLSIMALAIVSN-LGFLTPIDPL---LGKFIA 131
Query: 218 AACLCVLTAVNCMSVSWAMQVQTLFTVGKLVALFGIIAAGIGYL 261
A + ++ SV QTL T+ K++ +I GI +
Sbjct: 132 AGLIIAFMLLHLRSVEGGAAFQTLITIAKIIPFTIVIGLGIFWF 175
>gnl|CDD|129987 TIGR00909, 2A0306, amino acid transporter. [Transport and binding
proteins, Amino acids, peptides and amines].
Length = 429
Score = 59.4 bits (144), Expect = 3e-10
Identities = 50/175 (28%), Positives = 75/175 (42%), Gaps = 15/175 (8%)
Query: 98 VSIIVGCIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTIGALCYAELGTCISRSGG 157
+ +G +IG+GIFV G+ A I+ + + GL + AL YAEL + +G
Sbjct: 11 TMLGIGAMIGTGIFVV-TGIAAGKAGPA-VILSFVLAGLTALFIALVYAELAAMLPVAGS 68
Query: 158 DYAYILVAFGELPAFLRLWVALLIMRPTTQAIVALTFAQYAIKPFFPDSELPDRAVL--- 214
Y Y A GEL AF+ W L + A VA+ + Y ++ F P L AVL
Sbjct: 69 PYTYAYEAMGELTAFIIGWS-LWLEYGVAVAAVAVGWGGY-LQEFLPGVGLDLPAVLTAK 126
Query: 215 --------LLAAACLCVLTAVNCMSVSWAMQVQTLFTVGKLVALFGIIAAGIGYL 261
L A + LT + + + +V + V K+ AL A G +
Sbjct: 127 PGNGGVFNLPALLIVLFLTYILYLGAKESGKVNDILVVLKVAALLLFAALGAIHF 181
>gnl|CDD|129983 TIGR00905, 2A0302, transporter, basic amino acid/polyamine
antiporter (APA) family. This family includes several
families of antiporters that, rather commonly, are
encoded next to decarboxylases that convert one of the
antiporter substrates into the other. This arrangement
allows a cycle that can remove proteins from the
cytoplasm and thereby protect against acidic conditions
[Transport and binding proteins, Amino acids, peptides
and amines].
Length = 473
Score = 57.4 bits (139), Expect = 2e-09
Identities = 47/163 (28%), Positives = 70/163 (42%), Gaps = 9/163 (5%)
Query: 100 IIVGCIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTIGALCYAELGTCISR-SGGD 158
+++G +IGSGIF P LA G I+ W + G+ A +A L T GG
Sbjct: 17 LVIGSMIGSGIFSLPQN-LASVAGPGAVIIGWIITGVGMLALAFVFAILATKKPELDGGI 75
Query: 159 YAYILVAFGELPAFLR---LWVALLIMRPTTQAIVALTFAQYAIKPFFPDSELPDRAVLL 215
YAY FG F+ W++ I A++ + Y F + +P +L
Sbjct: 76 YAYAREGFGPYIGFMSGWGYWLSAWIGN-VAYAVLLFSALGYFFPLFGSGNPVP---SIL 131
Query: 216 LAAACLCVLTAVNCMSVSWAMQVQTLFTVGKLVALFGIIAAGI 258
A+ L V T + V A + T+ T+ KL+ LF I G
Sbjct: 132 GASVLLWVFTFLVLRGVRQAAFINTITTIAKLIPLFLFIIIGW 174
>gnl|CDD|129984 TIGR00906, 2A0303, cationic amino acid transport permease.
[Transport and binding proteins, Amino acids, peptides
and amines].
Length = 557
Score = 55.2 bits (133), Expect = 1e-08
Identities = 52/180 (28%), Positives = 80/180 (44%), Gaps = 24/180 (13%)
Query: 98 VSIIVGCIIGSGIFVSPAGVLAETQSVGLSIVI-WTVCGLLSTIGALCYAELGTCISRSG 156
+++ +G IG+GI+V G +A S G +IV+ + + GL + + CYAE G + ++G
Sbjct: 36 MALGIGSTIGAGIYVL-TGEVARNDS-GPAIVLSFLISGLAAVLSGFCYAEFGARVPKAG 93
Query: 157 GDYAYILVAFGELPAFLRLWVALLIMRPTTQAIV---ALTFAQYAIKP---FFPD----- 205
Y Y V GEL AF+ W +L T A+ + F + K F
Sbjct: 94 SAYLYSYVTVGELWAFITGWNLILEYVIGTAAVARSWSAYFDELLNKQIGQFRRTYFKLN 153
Query: 206 ----SELPDRAVLLLAAACLCVLTAV-NCMSVSWAMQVQTLFTVGKLVALFGIIAAGIGY 260
+E PD A CL +L AV V + V +FT ++ L +I AG
Sbjct: 154 YDGLAEYPD-----FFAVCLILLLAVLLSFGVKESAWVNKIFTAINILVLLFVIIAGFTK 208
>gnl|CDD|182613 PRK10644, PRK10644, arginine:agmatin antiporter; Provisional.
Length = 445
Score = 42.1 bits (99), Expect = 2e-04
Identities = 50/168 (29%), Positives = 78/168 (46%), Gaps = 26/168 (15%)
Query: 100 IIVGCIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTIGAL----CYAELGTCISRS 155
++ G I+GSG+F+ PA LA T G++I W L++ IGAL YA++ +
Sbjct: 18 MVAGNIMGSGVFLLPAN-LASTG--GIAIYGW----LVTIIGALGLSMVYAKMSSLDPSP 70
Query: 156 GGDYAYILVAFGELPAF---LRLWVALLIMRPTTQAIVALTFAQYAIKPFFPDSELPDRA 212
GG YAY FG + + W+A I ++ + + Y FFP + P
Sbjct: 71 GGSYAYARRCFGPFLGYQTNVLYWLACWIGN-IAMVVIGVGYLSY----FFPILKDP--- 122
Query: 213 VLLLAAACLCVL---TAVNCMSVSWAMQVQTLFTVGKLVALFGIIAAG 257
L+L C+ VL +N + +VQ + TV L+ + GI G
Sbjct: 123 -LVLTITCVVVLWIFVLLNIVGPKMITRVQAVATVLALIPIVGIAVFG 169
>gnl|CDD|224038 COG1113, AnsP, Gamma-aminobutyrate permease and related permeases
[Amino acid transport and metabolism].
Length = 462
Score = 41.5 bits (98), Expect = 3e-04
Identities = 41/174 (23%), Positives = 71/174 (40%), Gaps = 25/174 (14%)
Query: 100 IIVGCIIGSGIFVSPAGVLAETQSVGLSIVI-WTVCGL-----LSTIGALCYAELGTCIS 153
I +G IG+G+F+ +A G S+++ + + G+ + +G + A S
Sbjct: 23 IAIGGAIGTGLFLGSGSAIAMA---GPSVLLAYLIAGIFVFLIMRALGEMLVANPV---S 76
Query: 154 RSGGDYAYILVAFGELPAFLRLWV--ALLIMRPTTQAIVALTFAQYAIKPFFPDSELPDR 211
S DYA G FL W ++ + + Q+ +FPD
Sbjct: 77 GSFSDYAR--KYLGPWAGFLTGWTYWFFWVLVGIAELTAIGIYLQF----WFPDVPQ--- 127
Query: 212 AVLLLAAACLCVLTAVNCMSVSWAMQVQTLFTVGKLVALFGIIAAGIGYLGIGL 265
+ A A + +L AVN +SV +++ F + K+ A+ I GI L G
Sbjct: 128 --WVFALAAVVLLLAVNLISVKVFGELEFWFALIKVAAIIAFIVVGIVLLFGGF 179
>gnl|CDD|215858 pfam00324, AA_permease, Amino acid permease.
Length = 473
Score = 36.9 bits (86), Expect = 0.008
Identities = 37/160 (23%), Positives = 68/160 (42%), Gaps = 5/160 (3%)
Query: 98 VSIIVGCIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTIGALCYAELGTCISRSGG 157
+ I +G +IG+G+FV VL + +++ + + G++ + L E+ T +GG
Sbjct: 3 LMIALGGVIGTGLFVGSGSVLGQA-GPAGALLGYLIAGVVIFLTMLSLGEMSTNGPVAGG 61
Query: 158 DYAYILVAFGELPAFLRLWVALLIMRPTTQAIVALTFAQYAIKPFFPDSELPDRAVLLLA 217
YAY G F W L + LT A I+ + ++P V
Sbjct: 62 FYAYASRFLGPSLGFATGWNYWLSW--IFVIALELTAASILIQFWELVPDIPYLWVWGAV 119
Query: 218 AACLCVLTAVNCMSVSWAMQVQTLFTVGKLVALFGIIAAG 257
+ +L +N + V + + F + K++A+ G I G
Sbjct: 120 F--IVLLLIINLVGVKGYGEAEFWFALIKVIAIIGFIIVG 157
>gnl|CDD|185009 PRK15049, PRK15049, L-asparagine permease; Provisional.
Length = 499
Score = 36.9 bits (85), Expect = 0.009
Identities = 44/177 (24%), Positives = 79/177 (44%), Gaps = 13/177 (7%)
Query: 89 GQRLVRLEGVSIIVGCIIGSGIFVSPAGVLAETQSVGLSI-VIWTVCGLLSTIGALCYAE 147
G R V++ I +G IG+G+F+ G A Q G ++ +++ +CGL S E
Sbjct: 31 GNRQVQM----IAIGGAIGTGLFL---GAGARLQMAGPALALVYLICGLFSFFILRALGE 83
Query: 148 LGTCISRSGGDYAYILVAFGELPAFLRLWVALLIMRPTTQAIVALTFAQYAIKPFFPDSE 207
L SG +Y GE A++ W+ + T IV +T + +
Sbjct: 84 LVLHRPSSGSFVSYAREFLGEKAAYVAGWMYFINWAMT--GIVDITAVALYMHYWGAFGG 141
Query: 208 LPDRAVLLLAAACLCVLTAVNCMSVSWAMQVQTLFTVGKLVALFGIIAAGIGYLGIG 264
+P + A A L ++ +N + V W +++ F + K++A+ + G +LG G
Sbjct: 142 VPQ---WVFALAALTIVGTMNMIGVKWFAEMEFWFALIKVLAIVTFLVVGTVFLGSG 195
>gnl|CDD|129986 TIGR00908, 2A0305, ethanolamine permease. The three genes used as
the seed for this model (from Burkholderia pseudomallei,
Pseudomonas aeruginosa and Clostridium acetobutylicum
are all adjacent to genes for the catabolism of
ethanolamine. Most if not all of the hits to this model
have a similar arrangement of genes. This group is a
member of the Amino Acid-Polyamine-Organocation (APC)
Superfamily [Transport and binding proteins, Amino
acids, peptides and amines].
Length = 442
Score = 36.0 bits (83), Expect = 0.016
Identities = 40/155 (25%), Positives = 58/155 (37%), Gaps = 12/155 (7%)
Query: 100 IIVGCIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTIGALCYAELGTCISRSGGDY 159
I VG +I SG + LA+ G + V + T AEL T I +GG Y
Sbjct: 17 IGVGYVI-SGDYAGWNFGLAQGGWGGFVVATLLVATMYLTF-CFSLAELSTMIPTAGGGY 74
Query: 160 AYILVAFGELPAFLRLWVALLIMRPTTQAIVALTFAQYAIKPFFPDSELPDRAVLLLAAA 219
+ AFG FL A+LI +A Y +S P L A
Sbjct: 75 GFARRAFGPWGGFLA-GTAILIEFAFAPPAIACFIGAYC------ESLFPVGPGWLAALV 127
Query: 220 CLCVLTAVNCMSVSWAMQVQTLFTVGKLVALFGII 254
V +N + V A +++ + T VA+ +
Sbjct: 128 FYIVFIGINILGVGEAAKLEFVVT---AVAIIALG 159
>gnl|CDD|182622 PRK10655, potE, putrescine transporter; Provisional.
Length = 438
Score = 34.2 bits (79), Expect = 0.067
Identities = 27/78 (34%), Positives = 40/78 (51%), Gaps = 6/78 (7%)
Query: 107 GSGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTIGALCYAELGTCISRSGGDYAYILVAF 166
GSGI + P LA+ ++ SI+ W V + S A +A+ G +SGG Y AF
Sbjct: 23 GSGIIMLPTK-LAQVGTI--SILSWLVTAVGSMALAYAFAKCGMFSRKSGGMGGYAEYAF 79
Query: 167 GELPAFLRLW---VALLI 181
G+ F+ + V+LLI
Sbjct: 80 GKSGNFMANYTYGVSLLI 97
>gnl|CDD|163522 TIGR03810, arg_ornith_anti, arginine-ornithine antiporter. Members
of this protein family are the arginine/ornithine
antiporter, ArcD. This exchanger of ornithine for
arginine occurs in a system with arginine deiminase,
ornithine carbamoyltransferase, and carbamate kinase,
with together turn arginine to ornithine with the
generation of ATP and release of CO2 [Transport and
binding proteins, Amino acids, peptides and amines].
Length = 468
Score = 32.3 bits (74), Expect = 0.27
Identities = 47/163 (28%), Positives = 70/163 (42%), Gaps = 7/163 (4%)
Query: 99 SIIVGCIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTIGALCYAELGTCISR-SGG 157
+++VG +IGSGIF P+ +A + G ++ W + G+ A + L GG
Sbjct: 10 ALVVGSMIGSGIFSLPSD-MAAGAAAGAVLIGWVITGVGMLALAFSFQNLANKKPELDGG 68
Query: 158 DYAYILVAFGELPAFLRLWVALLIMRPTTQAIVALTFAQYAIKPFFPDSELPDRAVLLLA 217
Y+Y FG F+ W L A L F+ + FFP + ++
Sbjct: 69 VYSYAKAGFGPFMGFISAWGYWLSAWLGNVAYATLLFS--TLGYFFPIFGGGNNPPSIIG 126
Query: 218 AACL--CVLTAVNCMSVSWAMQVQTLFTVGKLVALFGIIAAGI 258
A+ L CV V V A + T+ T+ KLV LF I GI
Sbjct: 127 ASVLLWCVHFLVL-RGVEGAAFINTITTIAKLVPLFVFIVIGI 168
>gnl|CDD|236667 PRK10249, PRK10249, phenylalanine transporter; Provisional.
Length = 458
Score = 31.5 bits (71), Expect = 0.46
Identities = 39/167 (23%), Positives = 72/167 (43%), Gaps = 19/167 (11%)
Query: 100 IIVGCIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTIGALCYAELGTCISRS--GG 157
I +G IG+G+F+ G+ Q G ++++ G+ I L +LG + G
Sbjct: 31 IALGGAIGTGLFL---GIGPAIQMAGPAVLLGY--GVAGIIAFLIMRQLGEMVVEEPVSG 85
Query: 158 DYAYILVAF-GELPAFLRLW--VALLIMRPTTQAIVALTFAQYAIKPFFPDSELPDRAVL 214
+A+ + G FL W + ++ + A + QY PD
Sbjct: 86 SFAHFAYKYWGPFAGFLSGWNYWVMFVLVGMAELTAAGIYMQYW---------FPDVPTW 136
Query: 215 LLAAACLCVLTAVNCMSVSWAMQVQTLFTVGKLVALFGIIAAGIGYL 261
+ AAA ++ AVN ++V + + F + K++A+ G+I G+ L
Sbjct: 137 IWAAAFFIIINAVNLVNVRLYGETEFWFALIKVLAIIGMIGFGLWLL 183
>gnl|CDD|182458 PRK10435, cadB, lysine/cadaverine antiporter; Provisional.
Length = 435
Score = 30.5 bits (69), Expect = 0.82
Identities = 47/175 (26%), Positives = 73/175 (41%), Gaps = 25/175 (14%)
Query: 100 IIVGCIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTIGALCYAELGTCISRSGGDY 159
++ G ++GSGI + PA LA S+ +I W + + + A YA L T + GG
Sbjct: 15 VVAGNMMGSGIALLPAN-LASIGSI--AIWGWIISIIGAMSLAYVYARLATKNPQQGGPI 71
Query: 160 AY---ILVAFGELPAFLRL---WVALLIMRPTTQAIVALTFAQYAIKPFFPDSELPDRAV 213
AY I AFG L W+ L + I A+++ + FFP P A
Sbjct: 72 AYAGEISPAFGFQTGVLYYHANWIGNLAI-----GITAVSY----LSTFFPVLNDPIPA- 121
Query: 214 LLLAAACLC---VLTAVNCMSVSWAMQVQTLFTVGKLVALFGIIAAGIGYLGIGL 265
AC+ V T VN + +W ++ T+ V L+ + G G +
Sbjct: 122 ---GIACIAIVWVFTFVNMLGGTWVSRLTTIGLVLVLIPVVGTAIVGWHWFDAAT 173
>gnl|CDD|218155 pfam04575, DUF560, Protein of unknown function (DUF560). Family of
hypothetical bacterial proteins.
Length = 301
Score = 29.6 bits (67), Expect = 1.8
Identities = 15/69 (21%), Positives = 30/69 (43%), Gaps = 6/69 (8%)
Query: 20 DGNYDIT---KISLALYSEGSSNFDHAW-DGNYDITKISLALY--SGLFAFGGWNYLNFV 73
+G+Y ++ ++S AL + F+ DGN ++L + FGG ++
Sbjct: 139 EGSYWLSPKWQLSTALEYKQERYFERKHLDGNIHFVSLTLIYLPNPSQYWFGGLDFYRED 198
Query: 74 VDELQDPYN 82
+ D Y+
Sbjct: 199 TRDKADSYD 207
>gnl|CDD|213912 TIGR04299, antiport_PotE, putrescine-ornithine antiporter. Members
of this protein family are putrescine-ornithine
antiporter. They work together with an enzyme that
decarboxylates ornithine to putrescine. This two-gene
system has the net effect of removing a protein from the
cytosol, providing transient resistance to acid
conditions.
Length = 430
Score = 29.5 bits (66), Expect = 2.1
Identities = 22/69 (31%), Positives = 36/69 (52%), Gaps = 3/69 (4%)
Query: 105 IIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTIGALCYAELGTCISRSGGDYAYILV 164
++GSGI + P LA+ + +SI+ W V + + A +A G S+SGG Y
Sbjct: 19 MMGSGIIMLPTN-LAQVGT--MSIISWLVTAVGAMALAWAFARAGMYSSKSGGMGGYAEY 75
Query: 165 AFGELPAFL 173
+FG+ F+
Sbjct: 76 SFGKAGNFM 84
>gnl|CDD|225082 COG2171, DapD, Tetrahydrodipicolinate N-succinyltransferase [Amino
acid transport and metabolism].
Length = 271
Score = 28.8 bits (65), Expect = 3.1
Identities = 8/25 (32%), Positives = 16/25 (64%)
Query: 89 GQRLVRLEGVSIIVGCIIGSGIFVS 113
G +EGV + GC++ +G+F++
Sbjct: 192 GANSEVVEGVIVGDGCVVAAGVFIT 216
>gnl|CDD|218093 pfam04453, OstA_C, Organic solvent tolerance protein. Family
involved in organic solvent tolerance in bacteria. The
region contains several highly conserved, potentially
catalytic, residues.
Length = 385
Score = 28.9 bits (65), Expect = 3.1
Identities = 17/86 (19%), Positives = 25/86 (29%), Gaps = 5/86 (5%)
Query: 5 FLYFTEGSSNFDHAWDGNYDITKISLALYSE-GSSNFDHAWDGNYD-ITKISLALYSGLF 62
F + + W D T +S Y SSN ++S + F
Sbjct: 4 GYVFAKHQFRINDNWSFGVDYTYVSDKNYFRDYSSNLGLRSQTYLLRQGRLSYRGENWDF 63
Query: 63 AFGGWNY--LNFVVDELQDPYNLVLP 86
+ Y L + PY LP
Sbjct: 64 SLRAQYYQTLRDSIISNDTPYQ-RLP 88
>gnl|CDD|181922 PRK09512, rbsC, ribose ABC transporter permease protein; Reviewed.
Length = 320
Score = 28.5 bits (64), Expect = 3.2
Identities = 29/82 (35%), Positives = 43/82 (52%), Gaps = 7/82 (8%)
Query: 105 IIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTIGALCYAELGTCISRSGGDYAYILV 164
I+ SGI +S +LA T +V SIV V L++ AL LG I G ++V
Sbjct: 66 ILTSGIDLSVGSLLALTGAVAASIVGIEVNALVAVPAALA---LGAAIGAVTG----VIV 118
Query: 165 AFGELPAFLRLWVALLIMRPTT 186
A G++ AF+ V +L++R T
Sbjct: 119 AKGKVQAFIATLVMMLLLRGVT 140
>gnl|CDD|132469 TIGR03428, ureacarb_perm, permease, urea carboxylase system. A
number of bacteria obtain nitrogen by biotin- and
ATP-dependent urea degradation system distinct from
urease. The two characterized proteins of this system
are the enzymes urea carboxylase and allophanate
hydrolase, but other, uncharacterized proteins co-occur
as genes encoded nearby in multiple organisms. This
family includes predicted permeases of the amino acid
permease family, likely to transport either urea or a
compound from which urea is derived. It is found so far
only Actinobacteria, whereas a number of other species
with the urea carboxylase have an adjacent ABC
transporter operon.
Length = 475
Score = 28.3 bits (63), Expect = 5.5
Identities = 35/135 (25%), Positives = 55/135 (40%), Gaps = 9/135 (6%)
Query: 131 WTVCGLLSTIGALCYAELGTCISRSGGDYAYILVAFGELPAFLRLWVALLIMRPT-TQAI 189
W V + + AL +AEL SG Y + GE+ + W ++ T A
Sbjct: 53 WPVVFVGQLLVALNFAELAARYPISGAIYQWSRRMGGEVIGWFAGWFMIIAQIVTAAAAA 112
Query: 190 VALTFAQYAIKPFFP----DSEL--PDRAV--LLLAAACLCVLTAVNCMSVSWAMQVQTL 241
+AL I F D L P A +LL + L + T +NC+ V W +V T+
Sbjct: 113 IALQVVLPNIWSGFQIIGEDPTLTSPSGAANAVLLGSVLLVLTTVINCIGVEWMSRVNTI 172
Query: 242 FTVGKLVALFGIIAA 256
++V + +I
Sbjct: 173 GVTCEIVGVLAVIGV 187
>gnl|CDD|165129 PHA02764, PHA02764, hypothetical protein; Provisional.
Length = 399
Score = 28.0 bits (62), Expect = 5.6
Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
Query: 143 LCYAELGTCISRSGGDYAYILVAFGE--LPAF-LRLWVALLIMRPTTQAIVALTF 194
L Y +L T +GGDYAYI AF F + LW+ ++ +P +V L F
Sbjct: 64 LMYYKLTTKFPLNGGDYAYIRTAFSSKFYTIFGISLWLTYVLSQPILGDLVLLNF 118
>gnl|CDD|236830 PRK11049, PRK11049, D-alanine/D-serine/glycine permease;
Provisional.
Length = 469
Score = 27.8 bits (62), Expect = 6.1
Identities = 20/77 (25%), Positives = 40/77 (51%), Gaps = 10/77 (12%)
Query: 189 IVALT-FAQYAIKPFFPDSELPDRAVLLLAAACLCVLTAVNCMSVSWAMQVQTLFTVGKL 247
+VA+T +AQ+ +FPD L D L + +L ++N +V +++ F + K+
Sbjct: 118 VVAITAYAQF----WFPD--LSDWVASLA---VVLLLLSLNLATVKMFGEMEFWFAMIKI 168
Query: 248 VALFGIIAAGIGYLGIG 264
VA+ +I G+ + +
Sbjct: 169 VAIVALIVVGLVMVAMH 185
>gnl|CDD|173387 PTZ00093, PTZ00093, nucleoside diphosphate kinase, cytosolic;
Provisional.
Length = 149
Score = 27.0 bits (60), Expect = 7.5
Identities = 11/29 (37%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Query: 177 VALLIMRPTTQAIVALTFAQYAIKPFFPD 205
VAL +++PT + I + ++ KPFFP
Sbjct: 34 VALKMLQPTPE-IAEEHYKEHKGKPFFPG 61
>gnl|CDD|213911 TIGR04298, his_histam_anti, histidine-histamine antiporter.
Members of this protein family are antiporters that
exchange histidine with histamine, product of histidine
decarboxylation. A system consisting of this protein,
and a histidine decarboxylase encoded by an adjacent
gene, creates decarboxylation/antiport proton-motive
cycle that provides a transient resistance to acidic
conditions.
Length = 429
Score = 27.2 bits (60), Expect = 8.9
Identities = 22/68 (32%), Positives = 36/68 (52%), Gaps = 3/68 (4%)
Query: 105 IIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTIGALCYAELGTCISRSGGDYAYILV 164
++GSG+F+ P LA ++ + I+T+ G+++ AL +A+ R GG AY
Sbjct: 15 MMGSGVFLLPTN-LAGIGAISIFGWIFTIIGVIAL--ALVFAKTSLIHERIGGIVAYARD 71
Query: 165 AFGELPAF 172
AFG F
Sbjct: 72 AFGPFIGF 79
>gnl|CDD|119381 cd06419, GH25_muramidase_2, Uncharacterized bacterial muramidase
containing a glycosyl hydrolase family 25 (GH25)
catalytic domain. Endo-N-acetylmuramidases are
lysozymes (also referred to as peptidoglycan
hydrolases) that degrade bacterial cell walls by
catalyzing the hydrolysis of 1,4-beta-linkages between
N-acetylmuramic acid and N-acetyl-D-glucosamine
residues.
Length = 190
Score = 27.0 bits (60), Expect = 8.9
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 2 SFFFLYFTEGSSNFDHAWDGNYD 24
SF +L T+G+S FD + N+
Sbjct: 31 SFVYLRATQGASYFDDNFLSNFS 53
>gnl|CDD|234515 TIGR04234, seadorna_RNAP, seadornavirus RNA-directed RNA
polymerase. Members of this protein family are the
seadornavirus VP1 protein, the RNA-directed RNA
polymerase.
Length = 1144
Score = 27.5 bits (61), Expect = 9.0
Identities = 21/57 (36%), Positives = 24/57 (42%), Gaps = 7/57 (12%)
Query: 40 FDHAWDGNYDITKISLALYS--GLFAFGGWNYLNFVVDELQDPYNLVLPVTGQRLVR 94
FD G Y +T ISL L S N++NF D L N G RLVR
Sbjct: 437 FDTYAPGKYVLTIISLKLKSKNANILTHPENFINFDHDNLDRVVN-----AGSRLVR 488
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.327 0.142 0.445
Gapped
Lambda K H
0.267 0.0765 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 13,929,370
Number of extensions: 1370120
Number of successful extensions: 2088
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2055
Number of HSP's successfully gapped: 86
Length of query: 265
Length of database: 10,937,602
Length adjustment: 95
Effective length of query: 170
Effective length of database: 6,723,972
Effective search space: 1143075240
Effective search space used: 1143075240
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 58 (26.0 bits)