Query psy9205
Match_columns 220
No_of_seqs 141 out of 1181
Neff 9.8
Searched_HMMs 46136
Date Fri Aug 16 21:35:28 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9205.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/9205hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1287|consensus 100.0 3.7E-37 7.9E-42 255.7 17.9 219 1-219 225-454 (479)
2 TIGR00911 2A0308 L-type amino 100.0 1.9E-32 4.2E-37 236.5 21.7 213 2-214 257-479 (501)
3 TIGR00906 2A0303 cationic amin 100.0 6.5E-31 1.4E-35 228.6 22.3 208 1-211 252-557 (557)
4 TIGR00908 2A0305 ethanolamine 100.0 2.1E-30 4.5E-35 220.8 22.0 209 2-210 213-435 (442)
5 PRK11357 frlA putative fructos 100.0 2.4E-30 5.2E-35 220.6 21.1 208 1-209 216-439 (445)
6 PRK10655 potE putrescine trans 100.0 1.1E-29 2.4E-34 216.0 20.7 204 1-207 210-430 (438)
7 TIGR00909 2A0306 amino acid tr 100.0 3.9E-29 8.5E-34 212.2 22.2 199 2-203 217-428 (429)
8 PRK11387 S-methylmethionine tr 100.0 7.3E-29 1.6E-33 212.7 18.6 207 2-208 228-459 (471)
9 PRK10644 arginine:agmatin anti 100.0 4.6E-28 1E-32 206.5 20.8 202 2-208 213-431 (445)
10 PRK15049 L-asparagine permease 100.0 6.4E-28 1.4E-32 207.8 20.0 202 2-203 242-467 (499)
11 TIGR00913 2A0310 amino acid pe 100.0 7E-28 1.5E-32 207.2 19.9 214 2-215 219-471 (478)
12 PRK10197 gamma-aminobutyrate t 100.0 1.2E-27 2.7E-32 203.7 20.7 215 2-216 203-440 (446)
13 TIGR03813 put_Glu_GABA_T putat 100.0 2.5E-27 5.4E-32 203.5 21.5 203 2-204 216-454 (474)
14 TIGR00905 2A0302 transporter, 100.0 2E-27 4.3E-32 204.0 20.2 204 2-211 221-442 (473)
15 PRK10746 putative transport pr 100.0 2.4E-27 5.3E-32 202.6 20.3 209 2-210 222-454 (461)
16 PRK10836 lysine transporter; P 100.0 2.3E-27 5.1E-32 204.3 18.8 180 2-181 227-437 (489)
17 PRK11049 D-alanine/D-serine/gl 100.0 3.9E-27 8.5E-32 201.9 19.1 177 2-178 233-431 (469)
18 TIGR00910 2A0307_GadC glutamat 100.0 1.1E-26 2.5E-31 200.3 20.7 182 2-183 216-427 (507)
19 PRK10580 proY putative proline 99.9 2.8E-26 6.1E-31 196.1 19.4 204 2-205 221-447 (457)
20 TIGR01773 GABAperm gamma-amino 99.9 3.3E-26 7.2E-31 195.5 19.7 202 2-203 223-447 (452)
21 PRK10249 phenylalanine transpo 99.9 3.7E-26 8.1E-31 195.3 19.8 179 2-180 231-429 (458)
22 TIGR03810 arg_ornith_anti argi 99.9 6.9E-26 1.5E-30 194.2 21.2 201 2-208 217-434 (468)
23 PRK10435 cadB lysine/cadaverin 99.9 4.9E-26 1.1E-30 193.5 19.7 201 2-212 209-431 (435)
24 PRK10238 aromatic amino acid t 99.9 9.9E-26 2.1E-30 192.6 19.5 180 2-181 222-421 (456)
25 TIGR00907 2A0304 amino acid pe 99.9 3.8E-25 8.2E-30 190.4 21.0 207 2-210 239-480 (482)
26 PRK11021 putative transporter; 99.9 3.4E-25 7.4E-30 187.1 20.2 169 1-178 198-381 (410)
27 COG0833 LysP Amino acid transp 99.9 4.6E-25 1E-29 184.7 18.9 180 2-181 256-466 (541)
28 TIGR00930 2a30 K-Cl cotranspor 99.9 1.1E-24 2.4E-29 198.0 20.8 209 2-216 302-548 (953)
29 KOG1286|consensus 99.9 1.1E-23 2.4E-28 181.1 16.9 151 1-151 253-424 (554)
30 COG0531 PotE Amino acid transp 99.9 6.2E-23 1.4E-27 175.7 21.0 161 2-162 223-401 (466)
31 COG1113 AnsP Gamma-aminobutyra 99.9 3.2E-24 6.9E-29 176.4 11.6 205 2-206 225-451 (462)
32 PRK15238 inner membrane transp 99.9 1.1E-22 2.4E-27 175.6 20.5 179 2-181 233-458 (496)
33 TIGR03428 ureacarb_perm permea 99.9 9.2E-22 2E-26 169.1 21.5 180 2-182 235-443 (475)
34 KOG1289|consensus 99.9 5.9E-23 1.3E-27 171.9 13.3 209 1-210 273-515 (550)
35 PF00324 AA_permease: Amino ac 99.9 1.1E-23 2.4E-28 181.2 6.3 151 1-151 221-393 (478)
36 PF13520 AA_permease_2: Amino 99.9 8.7E-21 1.9E-25 161.0 17.6 177 2-182 210-406 (426)
37 KOG2082|consensus 99.7 3.4E-17 7.4E-22 140.6 13.1 211 2-218 432-658 (1075)
38 KOG1288|consensus 99.5 6.8E-13 1.5E-17 113.7 16.5 171 2-177 316-500 (945)
39 TIGR00796 livcs branched-chain 99.2 2.4E-09 5.2E-14 89.1 16.4 153 4-165 206-369 (378)
40 TIGR00837 araaP aromatic amino 99.1 6.2E-09 1.3E-13 87.4 14.6 88 3-90 201-296 (381)
41 KOG2083|consensus 98.8 8.9E-08 1.9E-12 81.8 10.8 210 1-216 244-477 (643)
42 PHA02764 hypothetical protein; 97.7 0.00027 5.8E-09 56.8 8.3 39 70-108 244-282 (399)
43 TIGR00912 2A0309 spore germina 97.3 0.0079 1.7E-07 50.1 13.4 87 3-90 202-293 (359)
44 PF13906 AA_permease_C: C-term 97.2 0.0013 2.9E-08 38.4 4.8 49 158-209 1-51 (51)
45 PF03222 Trp_Tyr_perm: Tryptop 97.0 0.088 1.9E-06 44.6 16.3 149 6-162 210-375 (394)
46 PF05525 Branch_AA_trans: Bran 96.5 0.22 4.7E-06 42.6 15.2 121 10-139 221-347 (427)
47 PRK10483 tryptophan permease; 96.3 0.63 1.4E-05 39.7 16.8 84 8-92 221-312 (414)
48 PRK15132 tyrosine transporter 96.1 0.73 1.6E-05 39.2 18.4 87 7-93 208-302 (403)
49 COG3949 Uncharacterized membra 96.0 0.3 6.6E-06 39.9 12.6 83 2-87 201-283 (349)
50 PRK09664 tryptophan permease T 95.9 0.66 1.4E-05 39.6 14.8 81 10-90 223-311 (415)
51 KOG1304|consensus 95.3 0.56 1.2E-05 40.2 12.3 39 4-43 265-306 (449)
52 PRK11375 allantoin permease; P 95.3 1.3 2.8E-05 38.7 15.0 32 67-103 314-346 (484)
53 PF02705 K_trans: K+ potassium 95.1 1.6 3.5E-05 38.4 14.6 97 53-149 265-377 (534)
54 PRK13629 threonine/serine tran 94.9 2.1 4.5E-05 36.9 14.7 85 9-93 248-346 (443)
55 COG0814 SdaC Amino acid permea 94.4 2.9 6.3E-05 35.8 16.7 40 3-42 216-256 (415)
56 KOG1303|consensus 93.9 1.1 2.4E-05 38.5 11.1 38 5-43 253-290 (437)
57 TIGR00814 stp serine transport 93.8 2.3 5E-05 36.2 12.7 90 4-93 214-311 (397)
58 PRK15433 branched-chain amino 93.0 5.4 0.00012 34.4 15.8 81 13-93 228-310 (439)
59 PLN03074 auxin influx permease 92.6 6.6 0.00014 34.2 14.6 38 4-42 257-294 (473)
60 PF01490 Aa_trans: Transmembra 92.0 0.08 1.7E-06 44.7 1.5 145 3-152 215-376 (409)
61 PF01566 Nramp: Natural resist 91.7 3.8 8.1E-05 34.2 11.2 42 54-95 244-287 (358)
62 PTZ00206 amino acid transporte 91.0 3.4 7.3E-05 36.0 10.5 39 4-42 280-319 (467)
63 COG1953 FUI1 Cytosine/uracil/t 90.4 11 0.00023 33.0 12.6 28 5-33 266-293 (497)
64 COG1115 AlsT Na+/alanine sympo 90.0 12 0.00025 32.3 13.8 95 2-96 288-385 (452)
65 TIGR00794 kup potassium uptake 89.7 6.4 0.00014 35.8 11.2 84 60-143 309-407 (688)
66 KOG1305|consensus 89.2 13 0.00028 31.8 12.8 40 4-43 218-258 (411)
67 PRK09442 panF sodium/panthothe 88.7 16 0.00034 31.9 15.8 79 6-87 263-345 (483)
68 PF01235 Na_Ala_symp: Sodium:a 88.6 6.3 0.00014 33.7 10.0 92 2-93 244-338 (416)
69 TIGR00835 agcS amino acid carr 86.8 19 0.00042 30.9 14.4 143 2-149 271-416 (425)
70 PRK00701 manganese transport p 86.2 21 0.00046 30.8 15.5 29 56-84 301-330 (439)
71 COG1114 BrnQ Branched-chain am 86.1 21 0.00045 30.6 15.4 40 49-88 263-303 (431)
72 PRK10745 trkD potassium transp 86.1 6.8 0.00015 35.2 9.0 83 61-143 284-381 (622)
73 PLN00151 potassium transporter 84.4 16 0.00034 34.0 10.6 89 54-142 409-512 (852)
74 TIGR00813 sss transporter, SSS 84.3 24 0.00053 29.9 12.1 79 10-88 232-321 (407)
75 PLN00150 potassium ion transpo 83.9 13 0.00029 34.3 10.0 89 54-142 349-452 (779)
76 PF14256 YwiC: YwiC-like prote 83.0 14 0.0003 26.1 8.8 22 130-151 31-52 (129)
77 COG1914 MntH Mn2+ and Fe2+ tra 79.9 38 0.00083 29.1 13.8 30 58-87 281-311 (416)
78 PLN00148 potassium transporter 79.4 21 0.00046 33.1 9.6 82 60-141 338-434 (785)
79 PF02028 BCCT: BCCT family tra 79.1 44 0.00096 29.4 15.1 89 62-150 390-484 (485)
80 COG3158 Kup K+ transporter [In 78.3 48 0.001 29.6 11.0 60 90-149 318-393 (627)
81 COG1457 CodB Purine-cytosine p 78.0 45 0.00098 28.9 17.7 37 57-93 265-301 (442)
82 PTZ00370 STEVOR; Provisional 77.9 2.9 6.3E-05 33.5 3.4 29 192-220 265-293 (296)
83 PLN00149 potassium transporter 76.4 66 0.0014 30.0 11.8 88 54-141 336-438 (779)
84 PF03845 Spore_permease: Spore 68.7 63 0.0014 26.4 10.0 86 5-91 200-290 (320)
85 COG4025 Predicted membrane pro 66.3 62 0.0014 25.4 8.6 17 83-99 54-70 (284)
86 PRK10484 putative transporter; 60.8 1.2E+02 0.0026 26.8 17.6 78 10-88 273-354 (523)
87 PF00474 SSF: Sodium:solute sy 60.1 1.1E+02 0.0023 25.9 10.3 41 53-96 283-324 (406)
88 PF12794 MscS_TM: Mechanosensi 58.9 1.1E+02 0.0023 25.6 15.7 30 3-32 32-65 (340)
89 PRK11017 codB cytosine permeas 58.9 1.1E+02 0.0025 26.0 18.2 23 70-92 264-286 (404)
90 TIGR01478 STEVOR variant surfa 52.8 17 0.00038 29.2 3.2 13 202-214 279-291 (295)
91 PF14316 DUF4381: Domain of un 44.7 25 0.00055 25.2 2.8 12 198-209 36-47 (146)
92 KOG4753|consensus 44.3 27 0.00058 24.1 2.7 28 3-30 41-68 (124)
93 COG4858 Uncharacterized membra 43.7 1.4E+02 0.0031 22.6 7.2 18 143-160 145-162 (226)
94 PF07301 DUF1453: Protein of u 43.5 1.1E+02 0.0023 22.3 5.8 30 156-185 27-57 (148)
95 TIGR02119 panF sodium/pantothe 42.9 2.2E+02 0.0049 24.6 17.8 81 6-88 262-345 (471)
96 COG4145 PanF Na+/panthothenate 42.6 1.6E+02 0.0034 25.3 7.3 80 7-87 262-343 (473)
97 PF07226 DUF1422: Protein of u 42.6 1.1E+02 0.0024 21.1 8.2 18 190-207 95-112 (117)
98 PRK11056 hypothetical protein; 42.1 1.2E+02 0.0025 21.1 7.5 9 109-117 11-19 (120)
99 PTZ00206 amino acid transporte 40.7 2.5E+02 0.0054 24.5 13.3 53 51-103 123-176 (467)
100 TIGR00800 ncs1 NCS1 nucleoside 40.5 2.4E+02 0.0052 24.3 12.5 20 11-30 238-257 (442)
101 PF14007 YtpI: YtpI-like prote 39.4 1.1E+02 0.0024 20.1 5.0 23 183-205 56-78 (89)
102 PF02468 PsbN: Photosystem II 39.2 32 0.0007 19.2 2.0 33 188-220 8-41 (43)
103 PF04246 RseC_MucC: Positive r 39.0 57 0.0012 23.0 3.9 14 163-176 76-89 (135)
104 PF11998 DUF3493: Protein of u 38.8 40 0.00086 21.4 2.6 31 4-34 11-41 (75)
105 PF08114 PMP1_2: ATPase proteo 38.4 30 0.00066 19.0 1.8 22 194-215 20-41 (43)
106 COG0053 MMT1 Predicted Co/Zn/C 37.7 2.3E+02 0.0049 23.2 9.4 20 143-162 60-79 (304)
107 PHA03164 hypothetical protein; 37.2 30 0.00065 21.8 1.9 32 2-33 47-78 (88)
108 COG1346 LrgB Putative effector 36.5 94 0.002 24.3 4.9 17 186-202 65-81 (230)
109 PF08693 SKG6: Transmembrane a 36.4 28 0.0006 19.1 1.5 9 194-202 26-34 (40)
110 PF11143 DUF2919: Protein of u 35.9 1.7E+02 0.0037 21.2 6.2 33 184-216 53-85 (149)
111 PRK13108 prolipoprotein diacyl 34.2 2.7E+02 0.0058 24.5 7.8 21 186-206 257-277 (460)
112 PRK09928 choline transport pro 34.0 3.9E+02 0.0084 24.8 12.7 87 62-148 407-502 (679)
113 PRK13183 psbN photosystem II r 33.4 49 0.0011 18.7 2.1 34 187-220 10-44 (46)
114 PRK09950 putative transporter; 31.9 3.7E+02 0.008 23.9 15.0 89 62-150 400-498 (506)
115 PF02009 Rifin_STEVOR: Rifin/s 31.4 34 0.00074 28.0 1.9 15 194-208 269-283 (299)
116 PTZ00046 rifin; Provisional 31.0 48 0.001 27.8 2.7 16 194-209 328-343 (358)
117 PF15099 PIRT: Phosphoinositid 30.3 31 0.00068 24.1 1.3 27 189-215 90-116 (129)
118 TIGR01477 RIFIN variant surfac 30.3 50 0.0011 27.6 2.7 16 194-209 323-338 (353)
119 PRK03356 L-carnitine/gamma-but 28.9 4.2E+02 0.0091 23.6 14.0 88 62-149 403-499 (504)
120 COG5547 Small integral membran 28.4 1.4E+02 0.003 17.8 4.5 19 158-176 7-25 (62)
121 PRK10862 SoxR reducing system 28.4 1.5E+02 0.0033 21.5 4.7 12 163-174 83-94 (154)
122 CHL00020 psbN photosystem II p 27.5 64 0.0014 18.0 1.9 33 188-220 8-41 (43)
123 COG0591 PutP Na+/proline sympo 27.1 4.4E+02 0.0095 23.2 11.4 35 53-87 316-351 (493)
124 PF05545 FixQ: Cbb3-type cytoc 26.7 82 0.0018 17.8 2.5 10 194-203 21-30 (49)
125 PF14150 YesK: YesK-like prote 26.6 1.8E+02 0.004 18.7 6.7 11 145-155 17-27 (81)
126 PRK15419 proline:sodium sympor 25.8 4.6E+02 0.01 23.0 17.8 32 56-87 319-351 (502)
127 TIGR02587 putative integral me 25.2 3.7E+02 0.008 21.7 6.9 41 122-162 177-217 (271)
128 COG4965 TadB Flp pilus assembl 24.1 2.2E+02 0.0048 23.4 5.3 27 192-218 112-139 (309)
129 PF05961 Chordopox_A13L: Chord 23.8 80 0.0017 19.5 2.1 23 187-209 6-28 (68)
130 KOG2784|consensus 23.0 58 0.0013 27.4 1.8 24 83-106 317-340 (483)
131 PRK04288 antiholin-like protei 22.9 2.1E+02 0.0044 22.6 4.7 17 186-202 68-84 (232)
132 PHA03049 IMV membrane protein; 22.9 87 0.0019 19.2 2.1 21 188-208 7-27 (68)
133 PF14715 FixP_N: N-terminal do 22.6 1.7E+02 0.0037 16.9 3.2 18 4-24 14-31 (51)
134 PF10112 Halogen_Hydrol: 5-bro 22.4 2E+02 0.0043 21.7 4.6 7 187-193 33-39 (199)
135 COG2271 UhpC Sugar phosphate p 22.0 5.4E+02 0.012 22.5 9.6 32 72-103 66-97 (448)
136 PF14654 Epiglycanin_C: Mucin, 20.9 2.4E+02 0.0052 18.9 4.0 38 1-38 4-41 (106)
137 PRK08568 preprotein translocas 20.7 5.8E+02 0.013 22.4 8.0 81 4-89 15-97 (462)
138 PF06939 DUF1286: Protein of u 20.3 1.9E+02 0.0042 19.8 3.6 22 9-30 63-85 (114)
139 PF05817 Ribophorin_II: Oligos 20.2 6.9E+02 0.015 23.0 9.6 22 6-27 538-559 (636)
140 COG2456 Uncharacterized conser 20.2 3E+02 0.0065 18.8 6.5 25 192-216 77-101 (121)
141 COG3965 Predicted Co/Zn/Cd cat 20.1 4.8E+02 0.01 21.1 7.1 83 130-212 52-153 (314)
142 PF01925 TauE: Sulfite exporte 20.0 4E+02 0.0088 20.3 7.1 12 165-176 73-84 (240)
No 1
>KOG1287|consensus
Probab=100.00 E-value=3.7e-37 Score=255.73 Aligned_cols=219 Identities=48% Similarity=0.851 Sum_probs=204.6
Q ss_pred CccccccccccChhHHHHHHHHHHHHHHHHHHHHHHhccChhhhccchhHHHHHHHHhccchhHHHHHHHHHHHHHHHHH
Q psy9205 1 MSKEQGFQITLNLPRAIWIAMPIVTLVYVCANVAYFTVLTKEEMLTSPAVAVTFGGKIYKELVWIIPILVAMSTFGGVNG 80 (220)
Q Consensus 1 ~~a~E~k~p~~~~p~ai~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 80 (220)
+.+||+|||+||+|||+..++.++++.|++++++.+.+++.||+.+++.++..+++..+|.+.+.+.+.+.++.+|+.|+
T Consensus 225 ~vteEiknP~ktLP~Ai~isi~lvt~iYil~NvAy~~vls~~e~l~S~aVav~Fa~~~~G~~~~~ip~~ValS~~G~~n~ 304 (479)
T KOG1287|consen 225 YVTEEIKNPRRTLPRAILISIPLVTVIYVLVNVAYFTVLSPDEILSSDAVAVTFADRILGVFAWAIPFSVALSLIGSLNS 304 (479)
T ss_pred cchHhhcCccccchHHHHHhhHHHHHHHHHhHhheeEecCHHHhcccchHHHHHHHHhccchHHHHHHHHHHHhhhhhhh
Confidence 46899999999999999999999999999999999999999999999999999999999998899999999999999999
Q ss_pred HHhhhhHHHHHhhccCCCchhhhhhchh----------hHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q psy9205 81 ILFTSARLFLTGSQEGHLPPLFSYIHIK----------ICLMSVLMLVTSDVFALINYMSVALWLSVGACTAGLISLRFT 150 (220)
Q Consensus 81 ~~~~~sR~l~~~a~dg~lP~~f~~~~~~----------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~r~~ 150 (220)
.++++||.++++||+|+||+.|++.|++ .++++++....+|++++++..++..++.+.+..++++++|+|
T Consensus 305 ~ifs~SR~~~~~areG~LP~~~s~i~~~~~TP~~allf~~~~~i~~~~~~d~~~LIny~sf~~~l~~~l~~~gll~lR~k 384 (479)
T KOG1287|consen 305 VIFSSSRLFYAGAREGHLPAFFSMISVRRFTPRPALLFSGLLSIVLSLIGDFDQLINYVSFAYWLFRGLSMAGLLWLRWK 384 (479)
T ss_pred HHHHHHHHHHHHHHccCccHHHHhhcCCCCCChHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999998 445555666677999999999999999999999999999999
Q ss_pred CCCCCCCcccchHHHHHHHHHHHHHHHhhcccC-chHHHHHHHHHHHhhhhhhhehhhhccchhhhhhhc
Q psy9205 151 QPDLHRPIKVHLSLPIIFLACCIFLVVVPTIRE-PMNTVISLFIIASGVPVYYVCVKWKSKPALLLEMHE 219 (220)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 219 (220)
+|+.+||+|.|...|++.+..+++++..++..+ +....++++.++.|+++|+...+++.||+|.++..|
T Consensus 385 ~p~~~rPiKvpl~~p~~~~~~~i~lvvip~~~~~~~~~~ig~~i~l~G~~~Y~~~i~~~~~p~~~~~~~~ 454 (479)
T KOG1287|consen 385 HPPLPRPIKVPLFIPILFLLICIFLVVIPIISDFPVETLIGIGIILSGVPFYFLFIHWKKKPKWLRKISE 454 (479)
T ss_pred CCCCCCCEeeeeehHHHHHHHHHHHhheeeeecCCccchhHHHHHHHhhhhheEEEEecCCcHHHHHhhH
Confidence 999999999999999999999999999999988 566889999999999999999999999999887744
No 2
>TIGR00911 2A0308 L-type amino acid transporter.
Probab=100.00 E-value=1.9e-32 Score=236.49 Aligned_cols=213 Identities=46% Similarity=0.873 Sum_probs=181.0
Q ss_pred ccccccccccChhHHHHHHHHHHHHHHHHHHHHHHhccChhhhccchhHHHHHHHHhccchhHHHHHHHHHHHHHHHHHH
Q psy9205 2 SKEQGFQITLNLPRAIWIAMPIVTLVYVCANVAYFTVLTKEEMLTSPAVAVTFGGKIYKELVWIIPILVAMSTFGGVNGI 81 (220)
Q Consensus 2 ~a~E~k~p~~~~p~ai~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 81 (220)
.+||+|||+|++|||+..++.+++++|++.+++.....|.+++.+++++...+.+...|..+.++.+...++.+++.++.
T Consensus 257 ~a~E~knP~r~iPrAi~~s~~~v~~~Y~l~~~a~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~~i~~~~~is~~~~~~~~ 336 (501)
T TIGR00911 257 VTEEVKNPYRTLPIAIIISMPIVTFIYVLTNIAYFTVLSPEELLASLAVAVDFGERLLGVMSWAMPALVGLSCFGSVNGS 336 (501)
T ss_pred hHHHhcCchhhhHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhcChHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 58999999999999999999999999999999998888998887765555556666666556788888899999999999
Q ss_pred HhhhhHHHHHhhccCCCchhhhhhchh----------hHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHhhhccC
Q psy9205 82 LFTSARLFLTGSQEGHLPPLFSYIHIK----------ICLMSVLMLVTSDVFALINYMSVALWLSVGACTAGLISLRFTQ 151 (220)
Q Consensus 82 ~~~~sR~l~~~a~dg~lP~~f~~~~~~----------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~r~~~ 151 (220)
+.+.||++++|||||.+|++|+|+|+| ..+++++....++++++.++.++..++.|.+..++++++|+|+
T Consensus 337 ~~~~sR~l~a~ardg~lP~~~~~v~~~~~~P~~all~~~~i~~l~~~~~~~~~l~~~~~~~~~i~y~l~~~a~i~lR~~~ 416 (501)
T TIGR00911 337 LFSSSRLFFVGGREGHLPSLLSMIHVKRLTPLPSLLIVCTLTLLMLFSGDIYSLINLISFANWLFNALAVAGLLWLRYKR 416 (501)
T ss_pred HHHHHHHHHHHHhcCCccHHHHHhcCCCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHheeccC
Confidence 999999999999999999999999987 2333444445577888888889999999999999999999999
Q ss_pred CCCCCCcccchHHHHHHHHHHHHHHHhhcccCchHHHHHHHHHHHhhhhhhhehhhhccchhh
Q psy9205 152 PDLHRPIKVHLSLPIIFLACCIFLVVVPTIREPMNTVISLFIIASGVPVYYVCVKWKSKPALL 214 (220)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 214 (220)
|+.+||||.|.+.+.++++.++++++.+.+.++.....+.+++++|.++|+...++++++++.
T Consensus 417 p~~~rp~r~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~y~~~~~~~~~~~~~ 479 (501)
T TIGR00911 417 PEMNRPIKVPLFFPVFFLLSCLFLIILSLYSPPVGCGVGFIIMLTGVPVYFFGVWWQNKPKWF 479 (501)
T ss_pred CCCCCCccCchHHHHHHHHHHHHHhhhhhccCchhhHHHHHHHHHHHHHHHHHHHHHhccHhh
Confidence 999999999998888888888888888777777666777888889998888655666666664
No 3
>TIGR00906 2A0303 cationic amino acid transport permease.
Probab=99.98 E-value=6.5e-31 Score=228.59 Aligned_cols=208 Identities=20% Similarity=0.228 Sum_probs=173.5
Q ss_pred CccccccccccChhHHHHHHHHHHHHHHHHHHHHHHhccChhhhccchhHHHHHHHHhccchhHHHHHHHHHHHHHHHHH
Q psy9205 1 MSKEQGFQITLNLPRAIWIAMPIVTLVYVCANVAYFTVLTKEEMLTSPAVAVTFGGKIYKELVWIIPILVAMSTFGGVNG 80 (220)
Q Consensus 1 ~~a~E~k~p~~~~p~ai~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 80 (220)
+.+||+|||+||+|||+..++.+++++|++.+.+.....|+++++.+++....+.....++...++.++.+++.+++.++
T Consensus 252 ~~aeE~knP~r~iP~aii~sl~i~~vlY~lv~~~l~~~vp~~~l~~~~p~~~a~~~~g~~~~~~ii~~~~~~~~~~sl~~ 331 (557)
T TIGR00906 252 TTGEEVKNPQRAIPIGIVTSLLVCFVAYFLMSAALTLMMPYYLLDPDAPFPVAFEYVGWGPAKYIVAVGALCGMSTSLLG 331 (557)
T ss_pred HhHHhccCccccccHHHHHHHHHHHHHHHHHHHHHhccccHHHhCcCcHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHH
Confidence 46899999999999999999999999999999999999999887766555554443334445678889999999999999
Q ss_pred HHhhhhHHHHHhhccCCCchhhhhhchh----------hHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q psy9205 81 ILFTSARLFLTGSQEGHLPPLFSYIHIK----------ICLMSVLMLVTSDVFALINYMSVALWLSVGACTAGLISLRFT 150 (220)
Q Consensus 81 ~~~~~sR~l~~~a~dg~lP~~f~~~~~~----------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~r~~ 150 (220)
.+++.+|++++|||||.+|++|+|+|+| .++++.++....+++.+.++.+++.++.|.+..++.+++|++
T Consensus 332 ~~~~~sRil~amarDGlLP~~fakv~~r~~tP~~Ail~~~iv~~il~~~~~~~~l~~l~sig~ll~y~lv~~~~l~lR~~ 411 (557)
T TIGR00906 332 GMFPLPRVIYAMARDGLLFKWLAQINSKTKTPINATVVSGAIAALMAFLFDLKALVDLLSIGTLLAYSLVAACVLILRYQ 411 (557)
T ss_pred HHHHHHHHHHHHHcCCCccHHHhccCCCCCCcHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 9999999999999999999999999977 334444444556788899999999999999999999888843
Q ss_pred --------------------------------------------------------------------------------
Q psy9205 151 -------------------------------------------------------------------------------- 150 (220)
Q Consensus 151 -------------------------------------------------------------------------------- 150 (220)
T Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 491 (557)
T TIGR00906 412 PGLVYGQAKDTDEKDTLDSWVPFTSKSESQSEGFSLRTLFSGLILGLSILTTYGRAAIAEEAWSIALLTLFLVLFLLVVL 491 (557)
T ss_pred ccccccccccccccccccccccccccccccccchhHHHHHHHHHHHHHHHHHhhhhhccccchhHHHHHHHHHHHHHHHH
Confidence
Q ss_pred ----CCCC--CCCcccch--HHHHHHHHHHHHHHHhhcccCchHHHHHHHHHHHhhhhhhhehhhhccc
Q psy9205 151 ----QPDL--HRPIKVHL--SLPIIFLACCIFLVVVPTIREPMNTVISLFIIASGVPVYYVCVKWKSKP 211 (220)
Q Consensus 151 ----~~~~--~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 211 (220)
+|+. +|+||.|. ++|.+++..+++++.. -+..++.....|+.+|.++|+.|.++|+++
T Consensus 492 ~~~~~~~~~~~~~f~~p~~p~~p~~~i~~~~~l~~~---l~~~~~~~~~~w~~~g~~~y~~yg~~~s~~ 557 (557)
T TIGR00906 492 TIWRQPQNKQKVAFKVPLVPFLPALSILINIFLMVQ---LDADTWVRFAIWMAIGFLIYFLYGIRHSLE 557 (557)
T ss_pred HHhcCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHHHHHHhhhhhhccCC
Confidence 3333 57799998 8999999999999962 244566677789999999999999888763
No 4
>TIGR00908 2A0305 ethanolamine permease. The three genes used as the seed for this model (from Burkholderia pseudomallei, Pseudomonas aeruginosa and Clostridium acetobutylicum are all adjacent to genes for the catabolism of ethanolamine. Most if not all of the hits to this model have a similar arrangement of genes. This group is a member of the Amino Acid-Polyamine-Organocation (APC) Superfamily.
Probab=99.97 E-value=2.1e-30 Score=220.80 Aligned_cols=209 Identities=17% Similarity=0.177 Sum_probs=163.7
Q ss_pred ccccccccccChhHHHHHHHHHHHHHHHHHHHHHHhccChhhhccchhHHHHHHHHhccc---hhHHHHHHHHHHHHHHH
Q psy9205 2 SKEQGFQITLNLPRAIWIAMPIVTLVYVCANVAYFTVLTKEEMLTSPAVAVTFGGKIYKE---LVWIIPILVAMSTFGGV 78 (220)
Q Consensus 2 ~a~E~k~p~~~~p~ai~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~---~~~~~~~~~~~~~~~~~ 78 (220)
.+||+|||+||+|||+..++..+.++|+.......+..+.+++.+++.+.....+..+|. ...++.+...++.+++.
T Consensus 213 ~aeE~k~P~r~iprai~~s~~~~~~~~~~~~~~~~g~~~~~~l~~~~~p~~~~~~~~~g~~~~~~~~i~~~~~~~~~~s~ 292 (442)
T TIGR00908 213 AAEETKNPKRDIPRGLIGAILTLLALAAGILVVGPGAADAKELMGSNNPLPEALESIYGGSTWMSQFVNLVGLFGLIASF 292 (442)
T ss_pred HHHHhcCcccccCHHHHHHHHHHHHHHHHHHHHHhcCCCHHHhCCCcchHHHHHHHHhCCchHHHHHHHHHHHHHHHHHH
Confidence 589999999999999999999999999988777777778888765544444444544442 34567777788889999
Q ss_pred HHHHhhhhHHHHHhhccCCCchhhhhhchh---------hHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy9205 79 NGILFTSARLFLTGSQEGHLPPLFSYIHIK---------ICLMSVLMLVTSDVFALINYMSVALWLSVGACTAGLISLRF 149 (220)
Q Consensus 79 ~~~~~~~sR~l~~~a~dg~lP~~f~~~~~~---------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~r~ 149 (220)
++.+.+.+|++++|||||.+|++|+|+|++ +.+++++....++.+.+.++.++..++.|.++.++++++|+
T Consensus 293 ~~~~~~~sR~l~a~ardg~lP~~~~~~~~~~~P~~Ail~~~~i~~~~~l~~~~~~l~~~~~~~~~~~y~~~~~a~i~lr~ 372 (442)
T TIGR00908 293 HGIIYGYSRQIFALSRAGYLPESLSKVNRKKAPVLAIVVPGVIGFGLSLTGQTALIILVSVFGAIISYVLSMAAHFTLRI 372 (442)
T ss_pred HHHHHHHHHHHHHHHhcCCccHHHHHhCCCCCcHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999955 33444444455566678899999999999999999999999
Q ss_pred cCCCCCCCcccch--HHHHHHHHHHHHHHHhhcccCchHHHHHHHHHHHhhhhhhhehhhhcc
Q psy9205 150 TQPDLHRPIKVHL--SLPIIFLACCIFLVVVPTIREPMNTVISLFIIASGVPVYYVCVKWKSK 210 (220)
Q Consensus 150 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 210 (220)
++|+.+||||.|. +.++++++.+++.++..+..++........+.+++.++|+.+.|+|++
T Consensus 373 ~~p~~~rp~~~p~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 435 (442)
T TIGR00908 373 RRPDMERPYRTPGGILTPGVALVLACVALVTGFYVDPRVVVGAVAIFVVLIGYYFLYSRHHLV 435 (442)
T ss_pred cCCCCCCCccCCCcchHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHhhhhchhh
Confidence 9999999999986 788888888888887666655544444556666666667665444443
No 5
>PRK11357 frlA putative fructoselysine transporter; Provisional
Probab=99.97 E-value=2.4e-30 Score=220.56 Aligned_cols=208 Identities=14% Similarity=0.217 Sum_probs=168.1
Q ss_pred CccccccccccChhHHHHHHHHHHHHHHHHHHHHHHhccChhhhccchhHHHHHHHH--hccc-hhHHHHHHHHHHHHHH
Q psy9205 1 MSKEQGFQITLNLPRAIWIAMPIVTLVYVCANVAYFTVLTKEEMLTSPAVAVTFGGK--IYKE-LVWIIPILVAMSTFGG 77 (220)
Q Consensus 1 ~~a~E~k~p~~~~p~ai~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~-~~~~~~~~~~~~~~~~ 77 (220)
+.+||+|||+||+|||+..++.+++++|++.+.+.....|.+++.+++.+.....+. ..|. .+.++.+...++.+++
T Consensus 216 ~~a~E~k~P~r~iP~Ai~~~~~i~~~~Y~l~~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 295 (445)
T PRK11357 216 YMTGEIKNPGKTMPRALIGSCLLVLVLYTLLALVISGLMPFDKLANSETPISDALTWIPALGSTAGIFVAITAMIVILGS 295 (445)
T ss_pred hhHHHhcCccccchHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhcCCchHHHHHHHHHhcchHHHHHHHHHHHHHHHHH
Confidence 358999999999999999999999999999999999999999887655444444443 2444 3567777888899999
Q ss_pred HHHHHhhhhHHHHHhhccCCCchhhhhhchh----------hHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy9205 78 VNGILFTSARLFLTGSQEGHLPPLFSYIHIK----------ICLMSVLMLVTSDVFALINYMSVALWLSVGACTAGLISL 147 (220)
Q Consensus 78 ~~~~~~~~sR~l~~~a~dg~lP~~f~~~~~~----------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 147 (220)
.++.+.+.+|++++|+|||.+|++|+|+||| ++++++++....+++++.+..+...++.|.+...+.+++
T Consensus 296 ~~~~~~~~sR~~~a~ardg~lp~~~~~v~~~~~tP~~a~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~i~l 375 (445)
T PRK11357 296 LSSCVMYQPRLEYAMAKDNLFFKCFGHVHPKYNTPDVSIILQGALGIFFIFVSDLTSLLGYFTLVMCFKNTLTFGSIIWC 375 (445)
T ss_pred HHHHHHhhhhHHHHHHhcCCchHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHhee
Confidence 9999999999999999999999999999976 344555555567888899999999999999988898888
Q ss_pred hccCCCCCCCcccch--HHHHHHHHHHHHHHHhhcccCchH-HHHHHHHHHHhhhhhhhehhhhc
Q psy9205 148 RFTQPDLHRPIKVHL--SLPIIFLACCIFLVVVPTIREPMN-TVISLFIIASGVPVYYVCVKWKS 209 (220)
Q Consensus 148 r~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~ 209 (220)
|+++ +.+||||.|. ..++++++.+++++..+...++.. ...++.++++|.++|+.++++++
T Consensus 376 r~~~-~~~~~~k~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~y~~~~~~~~ 439 (445)
T PRK11357 376 RKRD-DYKPLWRTPAFGLMTTLAIASSLILVASTFVWAPIPGLICAVIVIATGLPAYAFWAKRSR 439 (445)
T ss_pred ecCC-CCCCCcccCCchHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhhhHHhheechhh
Confidence 8765 5678999987 688888888888877665556654 34577888899998886555543
No 6
>PRK10655 potE putrescine transporter; Provisional
Probab=99.97 E-value=1.1e-29 Score=216.05 Aligned_cols=204 Identities=17% Similarity=0.175 Sum_probs=162.8
Q ss_pred CccccccccccChhHHHHHHHHHHHHHHHHHHHHHHhccChhhhccchhHHHHHHHHhccc-hhHHHHHHHHHHHHHHHH
Q psy9205 1 MSKEQGFQITLNLPRAIWIAMPIVTLVYVCANVAYFTVLTKEEMLTSPAVAVTFGGKIYKE-LVWIIPILVAMSTFGGVN 79 (220)
Q Consensus 1 ~~a~E~k~p~~~~p~ai~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~ 79 (220)
+.+||+|||+||+|||+..+..+++++|++...+.....|.+++.+++.+.....++.+|+ .+.++.+..+++.+++.+
T Consensus 210 ~~a~E~k~P~r~iPrAi~~~~~~~~~~Y~l~~~~~~~~~~~~~l~~~~~p~~~~~~~~~g~~~~~~~~~~~~is~~~~~~ 289 (438)
T PRK10655 210 ANSDAVENPERNVPIAVLGGTLGAAVIYIVSTNVIAGIVPNMELANSTAPFGLAFAQMFNPTVGKIVMALMVMSCCGSLL 289 (438)
T ss_pred hhHHHhhCccccccHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHhhccchHHHHHHHHcChhHHHHHHHHHHHHHHHHHH
Confidence 3689999999999999999999999999999888888889888766554544445555555 467888888899999999
Q ss_pred HHHhhhhHHHHHhhccCCCchhhhhhchh---------hHHHHHHHHh-------hhcHHHHHHHHHHHHHHHHHHHHHH
Q psy9205 80 GILFTSARLFLTGSQEGHLPPLFSYIHIK---------ICLMSVLMLV-------TSDVFALINYMSVALWLSVGACTAG 143 (220)
Q Consensus 80 ~~~~~~sR~l~~~a~dg~lP~~f~~~~~~---------~~~~~~~~~~-------~~~~~~l~~~~~~~~~~~~~~~~~~ 143 (220)
+.+.+.+|++++|+|||.+|++|+|+||+ ..+++.++.. .++++.+.++.++..++.|.+..++
T Consensus 290 ~~~~~~sR~~~~~a~dg~lP~~~~~v~~~~tP~~all~~~~i~~~l~l~~~~~~~~~~~~~l~~~~~~~~~i~y~~~~~~ 369 (438)
T PRK10655 290 GWQFTIAQVFKSSADEGYFPKIFSRVTKVDAPVQGMLIIVVIQSLLSLMTISPSLNSQFNVLVNLAVVTNIIPYILSMAA 369 (438)
T ss_pred HHHHHHHHHHHHHhcCCchhHHHHhhCcCCCCHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999976 2222222211 2457789999999999999999999
Q ss_pred HHhhhccCCCCCCCcccchHHHHHHHHHHHHHHHhhcccCchHHHHHHHHHHHhhhhhhhehhh
Q psy9205 144 LISLRFTQPDLHRPIKVHLSLPIIFLACCIFLVVVPTIREPMNTVISLFIIASGVPVYYVCVKW 207 (220)
Q Consensus 144 ~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 207 (220)
.+++|+++|+.+||||.+..++.++.+.+++.+. ..+......+..++++|.++|...+++
T Consensus 370 ~~~lr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~g~~~y~~~~~~ 430 (438)
T PRK10655 370 LVIIQKVANVPPSKAKVANFIAFVGALYSFYALY---SSGEEAMLYGSIVTFLGWTLYGLISPR 430 (438)
T ss_pred HHHHHhhCCCCcchhHHHHHHHHHHHHHHHHHHH---HhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999998888889999877778888877776553 223334566788889999888654433
No 7
>TIGR00909 2A0306 amino acid transporter.
Probab=99.97 E-value=3.9e-29 Score=212.23 Aligned_cols=199 Identities=23% Similarity=0.352 Sum_probs=165.7
Q ss_pred ccccccccccChhHHHHHHHHHHHHHHHHHHHHHHhccChhhhccchhHHHHHHHHhccc-hhHHHHHHHHHHHHHHHHH
Q psy9205 2 SKEQGFQITLNLPRAIWIAMPIVTLVYVCANVAYFTVLTKEEMLTSPAVAVTFGGKIYKE-LVWIIPILVAMSTFGGVNG 80 (220)
Q Consensus 2 ~a~E~k~p~~~~p~ai~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~ 80 (220)
.+||+|||+|++|||+..++.++.++|++.+.+.....|.+++.+++.+.....++..+. ...++.+..+++.+++.++
T Consensus 217 ~~~E~~~p~r~ip~ai~~~~~~~~v~Yil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 296 (429)
T TIGR00909 217 AAEEVKNPERDIPKAIILSLIVVTLLYVLVAAVILGAVPWRQLAGSTAPLSLVGYDLGQGIGGLILTAGAVFSIASVMLA 296 (429)
T ss_pred hHHhccCccccccHHHHHHHHHHHHHHHHHHHHHhcCcCHHHhCCCCcHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHH
Confidence 579999999999999999999999999999999988889888777655555555555554 4688999999999999999
Q ss_pred HHhhhhHHHHHhhccCCCchhhhhhchh----------hHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q psy9205 81 ILFTSARLFLTGSQEGHLPPLFSYIHIK----------ICLMSVLMLVTSDVFALINYMSVALWLSVGACTAGLISLRFT 150 (220)
Q Consensus 81 ~~~~~sR~l~~~a~dg~lP~~f~~~~~~----------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~r~~ 150 (220)
.+.+.||++++|+|||.+|++|+|+|+| ...++++.....+++.+.++.+...++.|.+.+++.+++|+|
T Consensus 297 ~~~~~sR~~~~~a~dg~lP~~~~~~~~~~~~P~~a~~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~y~~~~~a~~~lr~~ 376 (429)
T TIGR00909 297 GIYGTSRVLFAMSRDGLLPGSLSKVHPKTGTPHMSIIIFSLTAALLASLVPLEGLAELTSIGTLIAFAAVNVAVIILRRR 376 (429)
T ss_pred HHHHHHHHHHHHHcCCCCcHHHHHcCCCCCCcHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999976 233444444456788899999999999999999999999999
Q ss_pred CCCCCCCcccch--HHHHHHHHHHHHHHHhhcccCchHHHHHHHHHHHhhhhhhh
Q psy9205 151 QPDLHRPIKVHL--SLPIIFLACCIFLVVVPTIREPMNTVISLFIIASGVPVYYV 203 (220)
Q Consensus 151 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 203 (220)
+|+.+||||.|. +.+.+.++.+.++.. ..++.......++.++|.++|..
T Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~g~~~y~~ 428 (429)
T TIGR00909 377 RPDIQRAFRCPLVPVLPVLVVSYCIYLLL---NLGPGTTVWFLVWMLLGSVFYFI 428 (429)
T ss_pred cCCCCCCCCCCcchHHHHHHHHHHHHHHH---HccHHHHHHHHHHHHHHHHHHHc
Confidence 999999999887 556665666665553 34556677888999999998864
No 8
>PRK11387 S-methylmethionine transporter; Provisional
Probab=99.96 E-value=7.3e-29 Score=212.72 Aligned_cols=207 Identities=16% Similarity=0.157 Sum_probs=158.7
Q ss_pred ccccccccccChhHHHHHHHHHHHHHHHHHHHHHHhccChhhhccchhHHHHHHHHhcc-chhHHHHHHHHHHHHHHHHH
Q psy9205 2 SKEQGFQITLNLPRAIWIAMPIVTLVYVCANVAYFTVLTKEEMLTSPAVAVTFGGKIYK-ELVWIIPILVAMSTFGGVNG 80 (220)
Q Consensus 2 ~a~E~k~p~~~~p~ai~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~ 80 (220)
.+||+|||+||+|||+..++..+.++|++..++.....|.++...++.+.....++..+ +...++.++++++.+++.++
T Consensus 228 ~a~E~knP~r~iPrAi~~~~~~~~~~y~~~~~~~~~~~p~~~~~~~~~p~~~~~~~~g~~~~~~ii~~~~~~s~~~~~~~ 307 (471)
T PRK11387 228 AAGETENPAKVIPVAIRTTIARLVIFFVGTVLVLAALIPMQQAGVEKSPFVLVFEKVGIPYAADIFNFVILTAILSAANS 307 (471)
T ss_pred HHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHheecCccccCccCChHHHHHHHcCCchHHHHHHHHHHHHHHHHHHH
Confidence 58999999999999999999999999999999988888988766544444444555444 45688899999999999999
Q ss_pred HHhhhhHHHHHhhccCCCchhhhhhchh---------hHHHHHHHHh------hhcHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9205 81 ILFTSARLFLTGSQEGHLPPLFSYIHIK---------ICLMSVLMLV------TSDVFALINYMSVALWLSVGACTAGLI 145 (220)
Q Consensus 81 ~~~~~sR~l~~~a~dg~lP~~f~~~~~~---------~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~~~~~~~~~ 145 (220)
.++++||++++|||||.+|++|+|+|++ ..+++.+... ...+..+.++++...++.|.+..++.+
T Consensus 308 ~~~~~sR~l~a~ardg~lP~~f~~~~~~~~P~~Ail~~~~~~~l~~~~~~~~~~~~~~~l~~l~~~~~li~y~~~~~~~i 387 (471)
T PRK11387 308 GLYASGRMLWSLSNEGTLPACFARLTKRGIPLTALSVSMLGGLLALFSSVVAPDTVFVALSAISGFAVVAVWLSICASHF 387 (471)
T ss_pred HHHHhhHHHHHHHhcCCcCHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999977 1111111111 123456788899999999999999999
Q ss_pred hhhccCCC-----CCCCcccch--HHHHHHHHHHHHHHHhhcccCch--HHHHHHHHHHHhhhhhhhehhhh
Q psy9205 146 SLRFTQPD-----LHRPIKVHL--SLPIIFLACCIFLVVVPTIREPM--NTVISLFIIASGVPVYYVCVKWK 208 (220)
Q Consensus 146 ~~r~~~~~-----~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~g~~~~~~~~~~~ 208 (220)
++|+++++ .+||||.|. +.+.++++.+++++.....+++. ..+.++++++++.+.|..++|.+
T Consensus 388 ~lr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 459 (471)
T PRK11387 388 MFRRRHLRDGKALSELAYRAPWYPLTPILGFVLCLLACVGLAFDPSQRIALWCGIPFVALCYGAYYLTQRLK 459 (471)
T ss_pred HHHHHHHhcCCCCCCCCccCCCccHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 99887653 247899887 78888888887777654333222 24567777888888787655443
No 9
>PRK10644 arginine:agmatin antiporter; Provisional
Probab=99.96 E-value=4.6e-28 Score=206.51 Aligned_cols=202 Identities=14% Similarity=0.184 Sum_probs=157.6
Q ss_pred ccccccccccChhHHHHHHHHHHHHHHHHHHHHHHhccChhhhccchhHHHHHHHHhccc-hhHHHHHHHHHHHHHHHHH
Q psy9205 2 SKEQGFQITLNLPRAIWIAMPIVTLVYVCANVAYFTVLTKEEMLTSPAVAVTFGGKIYKE-LVWIIPILVAMSTFGGVNG 80 (220)
Q Consensus 2 ~a~E~k~p~~~~p~ai~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~ 80 (220)
.+||+|||+|++|||+..++.+++++|++...+.....|++++..++.+.....+...|. .+.++.+..+++.+++.++
T Consensus 213 ~aeE~k~P~r~iPrai~~s~~i~~v~Y~l~~~~~~~~~~~~~l~~~~~p~~~~~~~~~g~~~~~~v~~~~~~s~~~~~~~ 292 (445)
T PRK10644 213 AAGVVKNPKRNVPIATIGGVLIAAVCYVLSSTAIMGMIPNAALRVSASPFGDAARMALGDTAGAIVSFCAAAGCLGSLGG 292 (445)
T ss_pred HHHHhhCcccchhHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHhcCCChHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 589999999999999999999999999999999999999988765554444555555554 4577888888999999999
Q ss_pred HHhhhhHHHHHhhccCCCchhhhhhchh---------hHHHHHHHHhh-------hcHHHHHHHHHHHHHHHHHHHHHHH
Q psy9205 81 ILFTSARLFLTGSQEGHLPPLFSYIHIK---------ICLMSVLMLVT-------SDVFALINYMSVALWLSVGACTAGL 144 (220)
Q Consensus 81 ~~~~~sR~l~~~a~dg~lP~~f~~~~~~---------~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~~~~~~~~ 144 (220)
.+...+|++++|+|||.+|++|+|+||+ +++++.++... +.++.+.+++++..+++|.++..+.
T Consensus 293 ~~~~~sr~~~a~ardg~lP~~~~~v~~~~tP~~Ai~~~~~i~~l~~l~~~~~~~~~~~~~l~~~~~~~~li~y~~~~~~~ 372 (445)
T PRK10644 293 WTLLAGQTAKAAADDGLFPPIFARVNKAGTPVAGLLIVGVLMTIFQLSSISPNASKEFGLVSSVSVIFTLVPYLYTCAAL 372 (445)
T ss_pred HHHHHHHHHHHHHhCCCccHHHHhhCcCCCCHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999977 23333322211 2477899999999999999999999
Q ss_pred HhhhccCCCCCCCcccchHHHHHHHHHHHHHHHhhcccCchHHHHHHHHHHHhhhhhhhehhhh
Q psy9205 145 ISLRFTQPDLHRPIKVHLSLPIIFLACCIFLVVVPTIREPMNTVISLFIIASGVPVYYVCVKWK 208 (220)
Q Consensus 145 ~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 208 (220)
+++|+|+++.++|+. .+.++++++.++++++. .++.....+..+.+.+.++|+..+++|
T Consensus 373 ~~l~~~~~~~~~p~~--~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~y~~~~~~~ 431 (445)
T PRK10644 373 LLLGHGHFGKARPAY--LAVTLIAFVYCIWAVVG---SGAKEVMWSFVTLMVITAFYALNYNRL 431 (445)
T ss_pred HHHhhcCCcccccch--hHHHHHHHHHHHHHHHH---hhHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 999988765555532 26788888888888752 334455566666777777776544433
No 10
>PRK15049 L-asparagine permease; Provisional
Probab=99.96 E-value=6.4e-28 Score=207.84 Aligned_cols=202 Identities=16% Similarity=0.129 Sum_probs=152.6
Q ss_pred ccccccccccChhHHHHHHHHHHHHHHHHHHHHHHhccChhhhccchhHHHHHHHHh-ccchhHHHHHHHHHHHHHHHHH
Q psy9205 2 SKEQGFQITLNLPRAIWIAMPIVTLVYVCANVAYFTVLTKEEMLTSPAVAVTFGGKI-YKELVWIIPILVAMSTFGGVNG 80 (220)
Q Consensus 2 ~a~E~k~p~~~~p~ai~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~ 80 (220)
.+||+|||+|++|||+..++..++++|++...+....+|.+++..+..+.....+.. .++.+.++.++++++.+++.|+
T Consensus 242 ~aeE~knP~r~iPrAi~~~~~~i~~~yi~~~~~~~~~~p~~~~~~~~sP~~~~~~~~g~~~~~~ii~~~ilia~~ss~ns 321 (499)
T PRK15049 242 AAGECKDPQTMVPKAINSVIWRIGLFYVGSVVLLVMLLPWSAYQAGQSPFVTFFSKLGVPYIGSIMNIVVLTAALSSLNS 321 (499)
T ss_pred HHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHheecchhccCcCCCHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHH
Confidence 589999999999999999999999999999999999999888765444443344433 3445788999999999999999
Q ss_pred HHhhhhHHHHHhhccCCCchhhhhhchh---------hHHHHHHH---H---hhhcHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9205 81 ILFTSARLFLTGSQEGHLPPLFSYIHIK---------ICLMSVLM---L---VTSDVFALINYMSVALWLSVGACTAGLI 145 (220)
Q Consensus 81 ~~~~~sR~l~~~a~dg~lP~~f~~~~~~---------~~~~~~~~---~---~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 145 (220)
.++++||++|+|||||.+|++|+|+|++ +.+++++. . ..+.++.+.++++++.++.|.++.++.+
T Consensus 322 ~~~~~sR~l~a~Ardg~lP~~f~kv~k~~~P~~Ail~~~~i~~l~~~l~~~~~~~~f~~l~~~~~~~~li~y~~~~~~~l 401 (499)
T PRK15049 322 GLYCTGRILRSMAMGGSAPSFMAKMSRQHVPYAGILATLVVYVVGVFLNYLVPSRVFEIVLNFASLGIIASWAFIIVCQM 401 (499)
T ss_pred HHHHHHHHHHHHHhcCCcCHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999976 12222211 1 1245778999999999999999999999
Q ss_pred hhhccCCC---CCCCcccch--HHHHHHHHHHHHHHHhhcccCc---hHHHHHHHHHHHhhhhhhh
Q psy9205 146 SLRFTQPD---LHRPIKVHL--SLPIIFLACCIFLVVVPTIREP---MNTVISLFIIASGVPVYYV 203 (220)
Q Consensus 146 ~~r~~~~~---~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~g~~~~~~ 203 (220)
++||+.++ .++|||.|. +.++++++.++++++......| +......++.++..+.|+.
T Consensus 402 ~~R~~~~~~~~~~~pf~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (499)
T PRK15049 402 RLRKAIKEGKAADVSFKLPGAPFTSWLTLLFLLSVLVLMAFDYPNGTYTIAALPIIGILLVIGWFG 467 (499)
T ss_pred HHHHhhhhcCCCCCCCcccCccHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHH
Confidence 99876433 357899987 6777777766666655444433 2233334444455545544
No 11
>TIGR00913 2A0310 amino acid permease (yeast).
Probab=99.96 E-value=7e-28 Score=207.15 Aligned_cols=214 Identities=14% Similarity=0.161 Sum_probs=153.1
Q ss_pred ccccccccccChhHHHHHHHHHHHHHHHHHHHHHHhccChhh--hccc-------hhHHHHHHHHhc-cchhHHHHHHHH
Q psy9205 2 SKEQGFQITLNLPRAIWIAMPIVTLVYVCANVAYFTVLTKEE--MLTS-------PAVAVTFGGKIY-KELVWIIPILVA 71 (220)
Q Consensus 2 ~a~E~k~p~~~~p~ai~~~~~~~~~~y~~~~~~~~~~~~~~~--~~~~-------~~~~~~~~~~~~-g~~~~~~~~~~~ 71 (220)
.+||+|||+||+|||+..++..++++|++..++.....|.++ +.++ ..+.....+... ++...++.++++
T Consensus 219 ~a~E~knP~r~iPrai~~~~~~~~~~Y~l~~~~~~~~~p~~~~~l~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~ 298 (478)
T TIGR00913 219 TAGEAANPRKSIPRAAKRTFWRILVFYILTLFLIGFLVPYNDPRLLSSSSSSDSAASPFVIAIQNHGIKVLPHIFNAVIL 298 (478)
T ss_pred HHHhhcChhhHHHHHHHHHHHHHHHHHHHHHHHheeeccCCChhhcccccCCCcCCCcHHHHHHHcCCchHhHHHHHHHH
Confidence 589999999999999999999999999998888777777554 2221 122222333332 345678889999
Q ss_pred HHHHHHHHHHHhhhhHHHHHhhccCCCchhhhhhchh---------hHHHHHHHHh------hhcHHHHHHHHHHHHHHH
Q psy9205 72 MSTFGGVNGILFTSARLFLTGSQEGHLPPLFSYIHIK---------ICLMSVLMLV------TSDVFALINYMSVALWLS 136 (220)
Q Consensus 72 ~~~~~~~~~~~~~~sR~l~~~a~dg~lP~~f~~~~~~---------~~~~~~~~~~------~~~~~~l~~~~~~~~~~~ 136 (220)
++.+++.++.++++||++++|||||.+|++|+|+||+ ..+++.+... .+.++.+.++++...++.
T Consensus 299 ~s~~~~~~~~~~~~sR~l~a~ardg~lP~~f~k~~~~~~P~~Ai~~~~~~~~l~~l~~~~~~~~~~~~l~~~~~~~~~i~ 378 (478)
T TIGR00913 299 ISVLSAANSSLYASSRTLYALAHQGLAPKIFAYVDRRGVPYVAVIVSSLFGLLAFLAVSKKEAEVFTWLLNISGLSGFFT 378 (478)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHhCCcccHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999977 2223322211 124677999999999999
Q ss_pred HHHHHHHHHhhhcc-----CCCCCCCcccch--HHHHHHHHHHHHHHHhhccc-------CchHHHHHHHHHHHhhhhhh
Q psy9205 137 VGACTAGLISLRFT-----QPDLHRPIKVHL--SLPIIFLACCIFLVVVPTIR-------EPMNTVISLFIIASGVPVYY 202 (220)
Q Consensus 137 ~~~~~~~~~~~r~~-----~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~g~~~~~ 202 (220)
|.+.+++.+++|++ +++.+||||.|. +.++++++.++++++...++ +........+.+..++++|.
T Consensus 379 y~~~~~~~i~~r~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 458 (478)
T TIGR00913 379 WMCICLSHIRFRKAMKAQGRSLDELPYKSQTGPYGSYYALFFNILILIAQGYVAFAPVKFSAKSFFEAYLSLPIFIALYI 458 (478)
T ss_pred HHHHHHHHHHHHHHHHhcCCCcccCCccCCCcchHHHHHHHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999998875 334578999987 66777777666666543321 12233344455555665666
Q ss_pred hehhhhccchhhh
Q psy9205 203 VCVKWKSKPALLL 215 (220)
Q Consensus 203 ~~~~~~~~~~~~~ 215 (220)
.++.++|++++.+
T Consensus 459 ~~~~~~~~~~~~~ 471 (478)
T TIGR00913 459 GHKVYKRDKLIIK 471 (478)
T ss_pred HHHHhccccCcCC
Confidence 6555555444443
No 12
>PRK10197 gamma-aminobutyrate transporter; Provisional
Probab=99.96 E-value=1.2e-27 Score=203.74 Aligned_cols=215 Identities=15% Similarity=0.161 Sum_probs=163.2
Q ss_pred ccccccccccChhHHHHHHHHHHHHHHHHHHHHHHhccChhhhccc-hhHHHHHHHHhcc-chhHHHHHHHHHHHHHHHH
Q psy9205 2 SKEQGFQITLNLPRAIWIAMPIVTLVYVCANVAYFTVLTKEEMLTS-PAVAVTFGGKIYK-ELVWIIPILVAMSTFGGVN 79 (220)
Q Consensus 2 ~a~E~k~p~~~~p~ai~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~ 79 (220)
.+||+|||+||+|||+..++..+.++|++...+.....|.++.+.+ ........+...+ +...++.++++++.+++.|
T Consensus 203 ~a~E~knP~r~iPrai~~~~~~i~i~Yil~~~~~~~~~p~~~~~~~~~~~~~~~~~~~g~~~~~~ii~~~i~~~~~~~~n 282 (446)
T PRK10197 203 AAAESDTPEKHIVRATNSVIWRISIFYLCSIFVVVALIPWNMPGLKAVGSYRSVLELLNIPHAKLIMDCVILLSVTSCLN 282 (446)
T ss_pred HHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHHHheecCcCcccccccCcHHHHHHHcCchHHHHHHHHHHHHHHHHHHH
Confidence 5899999999999999999999999999999998888887763322 1222223333333 3468888889999999999
Q ss_pred HHHhhhhHHHHHhhccCCCchhhhhhchh---------hHHHHHHHHh------hhcHHHHHHHHHHHHHHHHHHHHHHH
Q psy9205 80 GILFTSARLFLTGSQEGHLPPLFSYIHIK---------ICLMSVLMLV------TSDVFALINYMSVALWLSVGACTAGL 144 (220)
Q Consensus 80 ~~~~~~sR~l~~~a~dg~lP~~f~~~~~~---------~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~~~~~~~~ 144 (220)
+.+++.||++|+|||||.+|++|+|+|++ +..++++... ...++.+.+..+...++.|.++..+.
T Consensus 283 ~~~~~~sR~l~a~ardg~lP~~~~~~~~~~~P~~Ail~~~~~~~l~~l~~~~~~~~~~~~l~~~~~~~~li~y~~~~~a~ 362 (446)
T PRK10197 283 SALYTASRMLYSLSRRGDAPAVMGKINRSKTPYVAVLLSTGAAFLTVVVNYYAPAKVFKFLIDSSGAIALLVYLVIAVSQ 362 (446)
T ss_pred HHHHHHHHHHHHHHcCCCcCHHHHhhCcCCCcHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999966 2222222211 13577899999999999999999999
Q ss_pred Hhhhcc--CCCCCCCcccch--HHHHHHHHHHHHHHHhhccc-CchHHHHHHHHHHHhhhhhh-hehhhhccchhhhh
Q psy9205 145 ISLRFT--QPDLHRPIKVHL--SLPIIFLACCIFLVVVPTIR-EPMNTVISLFIIASGVPVYY-VCVKWKSKPALLLE 216 (220)
Q Consensus 145 ~~~r~~--~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~ 216 (220)
+++||+ +++.++|+|.|. +.+.++++.+.+++.....+ ++....++.++.+++..+|+ ..+|++|...|++.
T Consensus 363 i~lr~~~~~~~~~~~~~~~~~p~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 440 (446)
T PRK10197 363 LRMRKILRAEGSEIRLRMWLYPWLTWLVIGFITFVLVVMLFRPAQQLEVISTGLLAIGIICTVPIMARWKKLVLWQKT 440 (446)
T ss_pred HHHHHHHHhcCCCCCCcCCCcchHHHHHHHHHHHHHHHHHHCcchHHHHHHHHHHHHHHHhhhHHHhhhcccccCccc
Confidence 999985 334467888875 67777777776666554444 34445567777888888888 77777777776554
No 13
>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter. Members of this protein family are putative putative glutamate/gamma-aminobutyrate antiporters. Each member of the seed alignment is found adjacent to a glutamate decarboxylase, which converts glutamate (Glu) to gamma-aminobutyrate (GABA). However, the majority belong to genome contexts with a glutaminase (converts Gln to Glu) as well as the decarboxylase that converts Glu to GABA. The specificity of the transporter remains uncertain.
Probab=99.96 E-value=2.5e-27 Score=203.47 Aligned_cols=203 Identities=18% Similarity=0.177 Sum_probs=150.1
Q ss_pred ccccccccccChhHHHHHHHHHHHHHHHHHHHHHHhccChhhhccchhHHHHHH---HHh-ccchhHHHHHHHHHHHHHH
Q psy9205 2 SKEQGFQITLNLPRAIWIAMPIVTLVYVCANVAYFTVLTKEEMLTSPAVAVTFG---GKI-YKELVWIIPILVAMSTFGG 77 (220)
Q Consensus 2 ~a~E~k~p~~~~p~ai~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~g~~~~~~~~~~~~~~~~~ 77 (220)
.+||+|||+||+|||+..++.+++++|++.+++.....|+++...++++...+. +.. .++...++.+...++.+++
T Consensus 216 ~a~E~knP~r~iPrAi~~~~~~~~~~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~l~~ 295 (474)
T TIGR03813 216 HVKDVDNPDKNYPIAILIAALGTVLIFVLGTLAIAFIIPREDISLTQSLLVAFDNAFHWAGLSWLGPILAFALAIGVLAG 295 (474)
T ss_pred HHHhccCcccchhHHHHHHHHHHHHHHHHHHHHHHhccCHhhccccccHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHH
Confidence 479999999999999999999999999999999988889888654433322222 221 2234567777888899999
Q ss_pred HHHHHhhhhHHHHHhhccCCCchhhhhhchh---------hHHHHH----HHHhh----hcHHHHHHHHHHHHHHHHHHH
Q psy9205 78 VNGILFTSARLFLTGSQEGHLPPLFSYIHIK---------ICLMSV----LMLVT----SDVFALINYMSVALWLSVGAC 140 (220)
Q Consensus 78 ~~~~~~~~sR~l~~~a~dg~lP~~f~~~~~~---------~~~~~~----~~~~~----~~~~~l~~~~~~~~~~~~~~~ 140 (220)
.++.+.+.||++++|+|||.+|++|+|+||+ +.+++. +.... +.++.+.++++...++.|++.
T Consensus 296 ~~~~~~~~sR~~~a~ardg~lP~~~~kv~k~~~P~~a~~~~~~~~~~l~~~~~~~~s~~~~f~~l~~~~~~~~~i~y~~~ 375 (474)
T TIGR03813 296 VVTWVAGPSSGMLAVAKAGYLPTFFQKTNKNGMPIHIMFVQGIAVSVLSVLFVVMPSVQAAFQILSQLTVILYLVMYLLM 375 (474)
T ss_pred HHHHHHHHHHHHHHHhhcCCCCHHHhccCCCCCcHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999976 222211 11111 235678899999999999999
Q ss_pred HHHHHhhhccCCCCCCCcccch------HHHHHHHHHHHHHHHhhcccCc---------hHHHHHHHHHHHhhhhhhhe
Q psy9205 141 TAGLISLRFTQPDLHRPIKVHL------SLPIIFLACCIFLVVVPTIREP---------MNTVISLFIIASGVPVYYVC 204 (220)
Q Consensus 141 ~~~~~~~r~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~g~~~~~~~ 204 (220)
.++.+++|+|+|+.+||||.|. .++.++.+.+++.++..+.++. +...+..+.+++..+.|+.+
T Consensus 376 ~~a~i~lr~~~~~~~rpf~~p~g~~g~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~ny~~~~~~~~~~~~~~~~~~~ 454 (474)
T TIGR03813 376 FASAIYLRYSQPDRPRPYRIPGGLAGMWFIGGLGFVGSALAFVLSFIPPSQIGTGSPTRYVGLLIGLAALFVTAPFLIY 454 (474)
T ss_pred HHHHHHHHhcCCCCCCCeEecCCccchhHHHHHHHHHHHHHHheeEeCCcccCCCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999988888899999964 4667777777777766555431 23334444444455455543
No 14
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family. This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions.
Probab=99.96 E-value=2e-27 Score=203.97 Aligned_cols=204 Identities=16% Similarity=0.229 Sum_probs=161.8
Q ss_pred ccccccccccChhHHHHHHHHHHHHHHHHHHHHHHhccChhhhccchhH-HHHHHHHhccch-hHHHHHHHHHHHHHHHH
Q psy9205 2 SKEQGFQITLNLPRAIWIAMPIVTLVYVCANVAYFTVLTKEEMLTSPAV-AVTFGGKIYKEL-VWIIPILVAMSTFGGVN 79 (220)
Q Consensus 2 ~a~E~k~p~~~~p~ai~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~ 79 (220)
.+||+|| +||+|||+..++.+++++|++.+.+..+..|.+++.+++.+ ...+.+...|.. ..++.++.+++.+++.+
T Consensus 221 ~a~E~k~-~r~iPrai~~~~~i~~~~Yil~~~~~~~~~~~~~l~~~~~p~~~~~~~~~~g~~~~~~i~i~~~is~~~~~~ 299 (473)
T TIGR00905 221 SSGRAKN-KSDVGKATVLGTLGALVIYILITLLSLGVLPQQELANLPNPSMAAVLEMIVGKWGAVLISLGLIISVLGSLL 299 (473)
T ss_pred HHHHHhc-cccchHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHhhCCCchHHHHHHHHhChHHHHHHHHHHHHHHHHHHH
Confidence 5799999 99999999999999999999999999999999988765544 555666666654 57888889999999999
Q ss_pred HHHhhhhHHHHHhhccCCCchhhhhhchh---------hHHHHHHHH-----hhhcHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9205 80 GILFTSARLFLTGSQEGHLPPLFSYIHIK---------ICLMSVLML-----VTSDVFALINYMSVALWLSVGACTAGLI 145 (220)
Q Consensus 80 ~~~~~~sR~l~~~a~dg~lP~~f~~~~~~---------~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 145 (220)
+.+.+.||++|+|||||.+|++|+|+||| ..+++.+.. ..++++.+.++.++..++.|.+++++.+
T Consensus 300 ~~~~~~sR~~~amardg~lP~~~~~v~~~~tP~~Ai~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~i~y~~~~~a~~ 379 (473)
T TIGR00905 300 SWTMLAAEVPFSAAKDGLFPKIFGRVNKNGAPSVALLLTNILIQLFLLLTLLTSSAYNVLVSLAVVMILVPYLLSAAYLL 379 (473)
T ss_pred HHHHHHHHHHHHHHhCCChhHHHHhhCccCCCHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999988 222222111 1357888999999999999999999999
Q ss_pred hhhccC--CCCCCCcccchHHHHHHHHHHHHHHHhhcccCchHHHHHHHHHHHhhhhhhhehhhhccc
Q psy9205 146 SLRFTQ--PDLHRPIKVHLSLPIIFLACCIFLVVVPTIREPMNTVISLFIIASGVPVYYVCVKWKSKP 211 (220)
Q Consensus 146 ~~r~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 211 (220)
++|+++ |+. +.+.+.++++++.+.+.++.. ..++....++++++++|.++|...+|.++++
T Consensus 380 ~lr~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~---~~~~~~~~~~~~~~~~g~~~y~~~~~~~~~~ 442 (473)
T TIGR00905 380 KLAKVGTYPKI--KNRKALIVGVIACVYSIWLLY---AAGLKYLLLGFILYAPGIIFYGRARKERGKH 442 (473)
T ss_pred HHHHcCCcccc--ccchHHHHHHHHHHHHHHHHH---HhhHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 998876 332 222233777888877777665 3355567778888999998888766555443
No 15
>PRK10746 putative transport protein YifK; Provisional
Probab=99.96 E-value=2.4e-27 Score=202.60 Aligned_cols=209 Identities=13% Similarity=0.151 Sum_probs=158.6
Q ss_pred ccccccccccChhHHHHHHHHHHHHHHHHHHHHHHhccChhhhccch-hHHHHHHHHhccchhHHHHHHHHHHHHHHHHH
Q psy9205 2 SKEQGFQITLNLPRAIWIAMPIVTLVYVCANVAYFTVLTKEEMLTSP-AVAVTFGGKIYKELVWIIPILVAMSTFGGVNG 80 (220)
Q Consensus 2 ~a~E~k~p~~~~p~ai~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 80 (220)
.+||+|||+|++|||+..++..+.++|++..++.....|.+++..++ +....+.+...+..+.++.++++++.+++.|+
T Consensus 222 ~a~E~knP~k~iP~Ai~~~~~~i~~~yv~~~~~~~~~~p~~~~~~~~sp~v~~~~~~g~~~~~~i~~~~il~a~~s~~n~ 301 (461)
T PRK10746 222 TAGEAKNPQVTLRSAVGKVLWRILIFYVGAIFVIVTIFPWNEIGSNGSPFVLTFAKIGITAAAGIINFVVLTAALSGCNS 301 (461)
T ss_pred HHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHeeeeCCCCCCCCCCcHHHHHHHhCchhHHHHHHHHHHHHHHHHHHH
Confidence 58999999999999999999999999999998888889998877544 44444333333345678888999999999999
Q ss_pred HHhhhhHHHHHhhccCCCchhhhhhchh-----hHHHHHH-------HH-h----hhcHHHHHHHHHHHHHHHHHHHHHH
Q psy9205 81 ILFTSARLFLTGSQEGHLPPLFSYIHIK-----ICLMSVL-------ML-V----TSDVFALINYMSVALWLSVGACTAG 143 (220)
Q Consensus 81 ~~~~~sR~l~~~a~dg~lP~~f~~~~~~-----~~~~~~~-------~~-~----~~~~~~l~~~~~~~~~~~~~~~~~~ 143 (220)
.+++.||++++|||||.+|++|+|+|++ ..+++.. .. . ...++.+.++++.+.++.|.+..++
T Consensus 302 ~~~~~sR~l~~~a~~g~lP~~~~~~~~~g~P~~al~~~~~~~~l~~~~~~~~~~~~~~f~~l~~~~~~~~~i~w~~i~~~ 381 (461)
T PRK10746 302 GMYSCGRMLYALAKNRQLPAAMAKVSRHGVPVAGVAVSILILLVGSCLNYIIPNPQRVFVYVYSASVLPGMVPWFVILIS 381 (461)
T ss_pred HHHHHHHHHHHHHhCCCcCHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999977 1111111 10 1 1235668899999999999999999
Q ss_pred HHhhhccCCC--CCCCcccch--HHHHHHHHHHHHHHHhhcccCc--hHHHHHHHHHHHhhhhhhhehhhhcc
Q psy9205 144 LISLRFTQPD--LHRPIKVHL--SLPIIFLACCIFLVVVPTIREP--MNTVISLFIIASGVPVYYVCVKWKSK 210 (220)
Q Consensus 144 ~~~~r~~~~~--~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~g~~~~~~~~~~~~~ 210 (220)
.+++||++|+ .++|||.|. +.+.++++.++.++......+. .....+..+++++.+.|..+++++|+
T Consensus 382 ~i~~r~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~ 454 (461)
T PRK10746 382 QLRFRRAHKAAIASHPFRSILFPWANYLTMAFLICVLIGMYFNEDTRMSLFVGIIFLLAVTLIYKVFGLNRHG 454 (461)
T ss_pred HHHHHHhccccccCCCCcCCCccHHHHHHHHHHHHHHHHHHHCccHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Confidence 9999998775 357899876 6666666666666544433322 45566777777777788766555543
No 16
>PRK10836 lysine transporter; Provisional
Probab=99.95 E-value=2.3e-27 Score=204.26 Aligned_cols=180 Identities=15% Similarity=0.215 Sum_probs=140.8
Q ss_pred ccccccccccChhHHHHHHHHHHHHHHHHHHHHHHhccChhhhc---c------chhHHHHHHHHhccchhHHHHHHHHH
Q psy9205 2 SKEQGFQITLNLPRAIWIAMPIVTLVYVCANVAYFTVLTKEEML---T------SPAVAVTFGGKIYKELVWIIPILVAM 72 (220)
Q Consensus 2 ~a~E~k~p~~~~p~ai~~~~~~~~~~y~~~~~~~~~~~~~~~~~---~------~~~~~~~~~~~~~g~~~~~~~~~~~~ 72 (220)
.+||+|||+||+|||+..++..+.++|++...+....+|.++.. + +++....+.+...+..+.++.+++++
T Consensus 227 ~a~E~knP~r~iPrAi~~~~~~v~~~Yvl~~~~~~~~vp~~~~~~~~~~~~~~~~sp~~~~~~~~g~~~~~~ii~~~il~ 306 (489)
T PRK10836 227 AAGESEDPAKNIPRAVRQVFWRILLFYVFAILIISLIIPYTDPSLLRNDVKDISVSPFTLVFQHAGLLSAAAVMNAVILT 306 (489)
T ss_pred HHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHheecCCCChhhhccccccccCCcHHHHHHHcCChhHHHHHHHHHHH
Confidence 58999999999999999999999999999998888888765422 1 12333333333333356788889999
Q ss_pred HHHHHHHHHHhhhhHHHHHhhccCCCchhhhhhchh---------hHHHHHHHHhh------hcHHHHHHHHHHHHHHHH
Q psy9205 73 STFGGVNGILFTSARLFLTGSQEGHLPPLFSYIHIK---------ICLMSVLMLVT------SDVFALINYMSVALWLSV 137 (220)
Q Consensus 73 ~~~~~~~~~~~~~sR~l~~~a~dg~lP~~f~~~~~~---------~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~ 137 (220)
+.+++.|+.+++.||++++|||||.+|++|+|+|++ +.+++.+.... ..++.+.++++...++.|
T Consensus 307 a~~~~~n~~~~~~sR~l~a~Ardg~lP~~~~kv~~~~~P~~All~~~~~~~l~~l~~~~~~~~~~~~l~~~~~~~~~~~y 386 (489)
T PRK10836 307 AVLSAGNSGMYASTRMLYTLACDGKAPRIFAKLSRGGVPRNALYATTVIAGLCFLTSMFGNQTVYLWLLNTSGMTGFIAW 386 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCcCHHHHhhCCCCCcHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999977 22333222221 235668899999999999
Q ss_pred HHHHHHHHhhhcc----CCCCC-CCcccch--HHHHHHHHHHHHHHHhhcc
Q psy9205 138 GACTAGLISLRFT----QPDLH-RPIKVHL--SLPIIFLACCIFLVVVPTI 181 (220)
Q Consensus 138 ~~~~~~~~~~r~~----~~~~~-~~~~~~~--~~~~~~~~~~~~~~~~~~~ 181 (220)
.+..++.+++||+ +|+.+ ||||.|. +.+.++++.+++++.....
T Consensus 387 ~~~~~a~l~~R~~~~~~~~~~~~~p~~~p~~p~~~~~~~~~~~~~~~~~~~ 437 (489)
T PRK10836 387 LGIAISHYRFRRGYVLQGHDLNDLPYRSGFFPLGPIFAFVLCLIITLGQNY 437 (489)
T ss_pred HHHHHHHHHHHHHHHhcCCCcCCCCCcCCCccHHHHHHHHHHHHHHHHHHH
Confidence 9999999999885 45654 7999988 7888888888888775433
No 17
>PRK11049 D-alanine/D-serine/glycine permease; Provisional
Probab=99.95 E-value=3.9e-27 Score=201.90 Aligned_cols=177 Identities=18% Similarity=0.232 Sum_probs=139.3
Q ss_pred ccccccccccChhHHHHHHHHHHHHHHHHHHHHHHhccChhhhccchhHHHHHHHHhc-cchhHHHHHHHHHHHHHHHHH
Q psy9205 2 SKEQGFQITLNLPRAIWIAMPIVTLVYVCANVAYFTVLTKEEMLTSPAVAVTFGGKIY-KELVWIIPILVAMSTFGGVNG 80 (220)
Q Consensus 2 ~a~E~k~p~~~~p~ai~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~ 80 (220)
.+||+|||+||+|||+..+.+.+.++|++...+.....|.+++.+++.+.....+... ++...++.+..+++.+++.++
T Consensus 233 ~a~E~knP~r~iPrai~~~~~~~~~~y~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~s~~~~~~~ 312 (469)
T PRK11049 233 TAAETKDPEKSLPRAINSIPIRIIMFYVFALIVIMSVTPWSSVVPDKSPFVELFVLVGLPAAASVINFVVLTSAASSANS 312 (469)
T ss_pred HHHHhcCHhhHHHHHHHHHHHHHHHHHHHHHHHHeeecCccccCccCCcHHHHHHHcCChhHHHHHHHHHHHHHHHHHHH
Confidence 5899999999999999988888999999999998888888887665444433334333 345688888999999999999
Q ss_pred HHhhhhHHHHHhhccCCCchhhhhhchh---------hHHHHHH---H-Hhh----hcHHHHHHHHHHHHHHHHHHHHHH
Q psy9205 81 ILFTSARLFLTGSQEGHLPPLFSYIHIK---------ICLMSVL---M-LVT----SDVFALINYMSVALWLSVGACTAG 143 (220)
Q Consensus 81 ~~~~~sR~l~~~a~dg~lP~~f~~~~~~---------~~~~~~~---~-~~~----~~~~~l~~~~~~~~~~~~~~~~~~ 143 (220)
.+.+.||++++|||||.+|++|+|+||| +..++.+ . ... +.++.+.+++++...+.|.+...+
T Consensus 313 ~~~~~sR~l~a~ardg~lP~~~~kv~~~~tP~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~y~~~~~a 392 (469)
T PRK11049 313 GVFSTSRMLFGLAQEGVAPKAFAKLSKRAVPAKGLTFSCICLLGGVVLLYVNPSVIGAFTLVTTVSAILFMFVWTIILCS 392 (469)
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999987 1111111 1 111 246668889999999999999999
Q ss_pred HHhhhccCCCCC--CCcccch--HHHHHHHHHHHHHHHh
Q psy9205 144 LISLRFTQPDLH--RPIKVHL--SLPIIFLACCIFLVVV 178 (220)
Q Consensus 144 ~~~~r~~~~~~~--~~~~~~~--~~~~~~~~~~~~~~~~ 178 (220)
++++|+++|+.+ ||||.|. ..++++++.+++.+..
T Consensus 393 ~~~lr~~~p~~~~~~pf~~p~~~~~~~~~~~~~~~~~~~ 431 (469)
T PRK11049 393 YLVYRKQRPHLHEKSIYKMPLGKLMCWVCMAFFAFVLVL 431 (469)
T ss_pred HHHHHHhhhhcCCCCCccCcCcchHHHHHHHHHHHHHHH
Confidence 999999988765 5899886 6666666666655544
No 18
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter. Lowered cutoffs from 1000/500 to 800/300, promoted from subfamily to equivalog, and put into a Genome Property DHH 9/1/2009
Probab=99.95 E-value=1.1e-26 Score=200.34 Aligned_cols=182 Identities=17% Similarity=0.188 Sum_probs=141.3
Q ss_pred ccccccccccChhHHHHHHHHHHHHHHHHHHHHHHhccChhhhccchhHHHHHH---HHhc---cchhHHHHHHHHHHHH
Q psy9205 2 SKEQGFQITLNLPRAIWIAMPIVTLVYVCANVAYFTVLTKEEMLTSPAVAVTFG---GKIY---KELVWIIPILVAMSTF 75 (220)
Q Consensus 2 ~a~E~k~p~~~~p~ai~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~---g~~~~~~~~~~~~~~~ 75 (220)
.+||+|||+||+|||+..+++++.++|.+..++.....|++++..++++...+. .... ++...++.+..+++.+
T Consensus 216 ~a~E~knP~r~~PrAi~~~~i~~~~l~~l~~~~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~l 295 (507)
T TIGR00910 216 HINELENPGRDYPLAMILLMIAAICLDAIGGFSIAAVIPGKEINLSAGVIQTFQTLILHFAHEIEWLVKVIAALIAFGVL 295 (507)
T ss_pred HHHHccCCcccccHHHHHHHHHHHHHHHHHHHHHheecChhhcccchHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHH
Confidence 589999999999999999999999999998887777788887655443333222 2222 2345677888889999
Q ss_pred HHHHHHHhhhhHHHHHhhccCCCchhhhhhchh---------hHHHHHHHH----h-----hhcHHHHHHHHHHHHHHHH
Q psy9205 76 GGVNGILFTSARLFLTGSQEGHLPPLFSYIHIK---------ICLMSVLML----V-----TSDVFALINYMSVALWLSV 137 (220)
Q Consensus 76 ~~~~~~~~~~sR~l~~~a~dg~lP~~f~~~~~~---------~~~~~~~~~----~-----~~~~~~l~~~~~~~~~~~~ 137 (220)
++.++++.++||.++++||||.+|++|+|+|++ +++++.+.. . ...+..+.++++...++.|
T Consensus 296 ~~~~~~i~~~sR~l~~~ardg~lP~~~~k~nk~~~P~~a~~~~~~i~~l~~~~~~~~~~~~~~~f~~l~~~~~~~~~i~Y 375 (507)
T TIGR00910 296 AEIASWIVGPSRGMFAAAQKGLLPAAFAKMNKHEVPVPLVIIQGIITSIAGAILTFGGGGNNLSFLIAIALTVVIYLCAY 375 (507)
T ss_pred HHHHHHHHHHHHHHHHhcccCCcCHHHHhhCcCCCcHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999976 233332211 1 1124456778889999999
Q ss_pred HHHHHHHHhhhccCCCCCCCcccch------HHHHHHHHHHHHHHHhhcccC
Q psy9205 138 GACTAGLISLRFTQPDLHRPIKVHL------SLPIIFLACCIFLVVVPTIRE 183 (220)
Q Consensus 138 ~~~~~~~~~~r~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~ 183 (220)
++..++++++|+|+|+.+||||.|. .+++++++.+++.++..+.++
T Consensus 376 ~l~~~a~i~lr~k~p~~~rpf~~pg~~~~~~i~~~~~~~~~~~~~v~~~~Pp 427 (507)
T TIGR00910 376 FLFFIGYFVLILKHPDLKRTFNIPGGIGGKLIIAGIGFLLSIFAFFISFLPP 427 (507)
T ss_pred HHHHHHHHHHHHhcCCCCCCeEecCCccchhhHHHHHHHHHHHHHheeeeCC
Confidence 9999999999999999999999864 567777788887777666553
No 19
>PRK10580 proY putative proline-specific permease; Provisional
Probab=99.95 E-value=2.8e-26 Score=196.10 Aligned_cols=204 Identities=13% Similarity=0.093 Sum_probs=152.1
Q ss_pred ccccccccccChhHHHHHHHHHHHHHHHHHHHHHHhccChhhhccchhHHHHHHHHh-ccchhHHHHHHHHHHHHHHHHH
Q psy9205 2 SKEQGFQITLNLPRAIWIAMPIVTLVYVCANVAYFTVLTKEEMLTSPAVAVTFGGKI-YKELVWIIPILVAMSTFGGVNG 80 (220)
Q Consensus 2 ~a~E~k~p~~~~p~ai~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~ 80 (220)
.+||+|||+|++|||+..++..+.++|++.........|.+++..++.+.....+.. .++...++.+..+++.+++.++
T Consensus 221 ~a~E~knP~k~iPrAi~~~~~~~~~~y~~~~~~~~~~~p~~~i~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 300 (457)
T PRK10580 221 TAGEAKDPEKSIPRAINSVPMRILVFYVGTLFVIMSIYPWNQVGTNGSPFVLTFQHMGITFAASILNFVVLTASLSAINS 300 (457)
T ss_pred HHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHheecccCCCCccCChHHHHHHHcCChhHHHHHHHHHHHHHHHHHHH
Confidence 589999999999999999999899999999888888888888765433333333332 2234577888888999999999
Q ss_pred HHhhhhHHHHHhhccCCCchhhhhhchh---------hHHHHHHHH------hhhcHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9205 81 ILFTSARLFLTGSQEGHLPPLFSYIHIK---------ICLMSVLML------VTSDVFALINYMSVALWLSVGACTAGLI 145 (220)
Q Consensus 81 ~~~~~sR~l~~~a~dg~lP~~f~~~~~~---------~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 145 (220)
.+++.||++++|||||.+|++|+|+||+ +.++..+.. ..+.++.+.+++++..++.|.+...+.+
T Consensus 301 ~~~~~sR~~~~~ardg~lP~~~~kv~~~~~P~~Ai~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~y~~~~~~~~ 380 (457)
T PRK10580 301 DVFGVGRMLHGMAEQGSAPKIFSKTSRRGIPWVTVLVMTTALLFAVYLNYIMPENVFLVIASLATFATVWVWIMILLSQI 380 (457)
T ss_pred HHHHHHHHHHHHHhCCCcCHHHHhhCCCCCcHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999987 111111111 1234667899999999999999999999
Q ss_pred hhhccCCC---CCCCcccch--HHHHHHHHHHHHHHHhh-ccc-CchHHHHHHHHHHHhhhhhhheh
Q psy9205 146 SLRFTQPD---LHRPIKVHL--SLPIIFLACCIFLVVVP-TIR-EPMNTVISLFIIASGVPVYYVCV 205 (220)
Q Consensus 146 ~~r~~~~~---~~~~~~~~~--~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~g~~~~~~~~ 205 (220)
++||++++ .++|||.|. +.+.++++.+.+++... ..+ .+....++..+++++.+.|..++
T Consensus 381 ~lr~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~y~~~~ 447 (457)
T PRK10580 381 AFRRRLPPEEVKALKFKVPGGVATTIGGLIFLVFIIGLIGYHPDTRISLYVGFAWIVLLLIGWMFKR 447 (457)
T ss_pred HHHHHHHhcCCCCCCcccCCccHHHHHHHHHHHHHHHHHHHCccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99976432 235788886 67777777777666543 122 23445677777778887777643
No 20
>TIGR01773 GABAperm gamma-aminobutyrate permease. GabP is highly homologous to amino acid permeases from B. subtilis, E. coli, as well as to other members of the amino acid permease family (pfam00324). A member of the APC (amine-polyamine-choline) transporter superfamily, GABA permease possesses a "consensus amphiphatic region" (CAR) found to be evolutionarily conserved within this transport family. This amphiphatic region is located between helix 8 and cytoplasmic loop 8-9, forming a potential channel domain and suggested to play a significant role in ligand recognition and translocation. Unique to GABA permeases, a conserved cysteine residue (CYS-300, E.coli) located at the beginning of the amphiphatic domain, has been determined to be critical for catalytic specificity.
Probab=99.95 E-value=3.3e-26 Score=195.50 Aligned_cols=202 Identities=15% Similarity=0.139 Sum_probs=143.5
Q ss_pred ccccccccccChhHHHHHHHHHHHHHHHHHHHHHHhccChhhhcc-chhHHHHHHHHhcc-chhHHHHHHHHHHHHHHHH
Q psy9205 2 SKEQGFQITLNLPRAIWIAMPIVTLVYVCANVAYFTVLTKEEMLT-SPAVAVTFGGKIYK-ELVWIIPILVAMSTFGGVN 79 (220)
Q Consensus 2 ~a~E~k~p~~~~p~ai~~~~~~~~~~y~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~ 79 (220)
.+||+|||+||+|||+..+....+++|++.........|.++... ++.+.....+...+ ....++.++++++.+++.+
T Consensus 223 ~a~E~k~P~r~iPrAi~~~~~~~~~~y~l~~~~~~~~~p~~~~~~~~~~p~~~~~~~~g~~~~~~ii~~~~~~~~~~~~~ 302 (452)
T TIGR01773 223 AAAESSNPIKSITRATNSVIWRIIVFYLGSIFIVVALLPWNSPNLLEVGSYVAVLELLGIPHAKLIMDFVVLTAVLSCLN 302 (452)
T ss_pred HHHhhcChhhHHHHHHHHHHHHHHHHHHHHHHHHeeEeCCCCcccccCCcHHHHHHHcCChhHHHHHHHHHHHHHHHHHH
Confidence 589999999999999999999999999998887777777655332 22133333344333 3467888889999999999
Q ss_pred HHHhhhhHHHHHhhccCCCchhhhhhchh---------hHHHHHHHHh------hhcHHHHHHHHHHHHHHHHHHHHHHH
Q psy9205 80 GILFTSARLFLTGSQEGHLPPLFSYIHIK---------ICLMSVLMLV------TSDVFALINYMSVALWLSVGACTAGL 144 (220)
Q Consensus 80 ~~~~~~sR~l~~~a~dg~lP~~f~~~~~~---------~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~~~~~~~~ 144 (220)
+.++++||++++|||||.+|++|+|+|++ ..+++++... .+.++.+.+..+...++.|.++.++.
T Consensus 303 ~~~~~~sR~~~a~ardg~lP~~~~~v~~~~~P~~Ail~~~~~~~~~~l~~~~~~~~~f~~l~~~~~~~~~~~y~~~~~~~ 382 (452)
T TIGR01773 303 SALYTTSRMLYSLAERGDAPRVFMKLNKKGVPVQAVLASTFFSFLTVVVNYFAPDKVFLFLVNSSGAIALLVYLVIAVSQ 382 (452)
T ss_pred HHHHHHHHHHHHHHhCCCcCHHHHhhCCCCCcHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999966 2222222211 23356688888888899999999999
Q ss_pred HhhhccCCCCCCCcc--cch--HHHHHHHHHHHHHHHhhc-ccC-chHHHHHHHHHHHhhhhhhh
Q psy9205 145 ISLRFTQPDLHRPIK--VHL--SLPIIFLACCIFLVVVPT-IRE-PMNTVISLFIIASGVPVYYV 203 (220)
Q Consensus 145 ~~~r~~~~~~~~~~~--~~~--~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~g~~~~~~ 203 (220)
+++|+++|+.+|||+ .+. +.+.++++.+.+.+.... .++ .+.......+.+...++|..
T Consensus 383 i~~r~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~y~~ 447 (452)
T TIGR01773 383 LRMRKKLKANGEAIKIRMWLYPWLTWLVIIFICGILVSMLFIPSMRDEVLLTGLLTIIVLCSYLV 447 (452)
T ss_pred HHHHHHHHhcCCCCCccCCCccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHH
Confidence 999988776556544 442 555555555554444432 333 34455555556666655554
No 21
>PRK10249 phenylalanine transporter; Provisional
Probab=99.95 E-value=3.7e-26 Score=195.28 Aligned_cols=179 Identities=11% Similarity=0.158 Sum_probs=139.6
Q ss_pred ccccccccccChhHHHHHHHHHHHHHHHHHHHHHHhccChhhhccch-hHHHHHHHHhccchhHHHHHHHHHHHHHHHHH
Q psy9205 2 SKEQGFQITLNLPRAIWIAMPIVTLVYVCANVAYFTVLTKEEMLTSP-AVAVTFGGKIYKELVWIIPILVAMSTFGGVNG 80 (220)
Q Consensus 2 ~a~E~k~p~~~~p~ai~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 80 (220)
.+||+|||+|++|||+..++..+.++|++...+.....|++++..++ +....+.+...+..+.++.+..+++.+++.++
T Consensus 231 ~a~E~~~P~k~iPrai~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 310 (458)
T PRK10249 231 TAAEARDPEKSIPKAVNQVVYRILLFYIGSLVVLLALYPWVEVKSNSSPFVMIFHNLDSNVVASALNFVILVASLSVYNS 310 (458)
T ss_pred HHHHhcCHhhHHHHHHHHHHHHHHHHHHHHHHHHheeccccccCccCCcHHHHHHHcCchhHHHHHHHHHHHHHHHHHHH
Confidence 58999999999999999999999999999888888888887765443 44443333333345678888889999999999
Q ss_pred HHhhhhHHHHHhhccCCCchhhhhhchh---------hHHHHHHHH------hhhcHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9205 81 ILFTSARLFLTGSQEGHLPPLFSYIHIK---------ICLMSVLML------VTSDVFALINYMSVALWLSVGACTAGLI 145 (220)
Q Consensus 81 ~~~~~sR~l~~~a~dg~lP~~f~~~~~~---------~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 145 (220)
.++++||++|+|||||.+|++|+|+|++ +..++.+.. ....++.+.++++...++.|.+...+++
T Consensus 311 ~~~~~sR~l~a~ardg~lP~~~~kv~~~~~P~~All~~~~i~~l~~l~~~~~~~~~f~~l~~~~~~~~~i~y~~~~~~~l 390 (458)
T PRK10249 311 GVYSNSRMLFGLSVQGNAPKFLTRVSRRGVPINSLMLSGAITSLVVLINYLLPQKAFGLLMALVVATLLLNWIMICLAHL 390 (458)
T ss_pred HHHHHHHHHHHHhcCCCcCHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999977 222222211 1135777999999999999999999999
Q ss_pred hhhc--cCCCCCCCcccch--HHHHHHHHHHHHHHHhhc
Q psy9205 146 SLRF--TQPDLHRPIKVHL--SLPIIFLACCIFLVVVPT 180 (220)
Q Consensus 146 ~~r~--~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 180 (220)
++|| ++++.++|||.|. +.++++++.+.++++...
T Consensus 391 ~~r~~~~~~~~~~p~~~~~~p~~~~~~l~~~~~~~v~~~ 429 (458)
T PRK10249 391 RFRAAMRRQGRETQFKALLYPFGNYLCIAFLGMILLLMC 429 (458)
T ss_pred HHHHHHHhcCCCCCccCCCccHHHHHHHHHHHHHHHHHH
Confidence 9886 4455568999887 667777766666655443
No 22
>TIGR03810 arg_ornith_anti arginine/ornithine antiporter. Members of this protein family are the arginine/ornithine antiporter, ArcD. This exchanger of ornithine for arginine occurs in a system with arginine deiminase, ornithine carbamoyltransferase, and carbamate kinase, with together turn arginine to ornithine with the generation of ATP and release of CO2.
Probab=99.95 E-value=6.9e-26 Score=194.23 Aligned_cols=201 Identities=15% Similarity=0.137 Sum_probs=156.7
Q ss_pred ccccccccccChhHHHHHHHHHHHHHHHHHHHHHHhccChhhhccch-hHHHHHHHHhccc-hhHHHHHHHHHHHHHHHH
Q psy9205 2 SKEQGFQITLNLPRAIWIAMPIVTLVYVCANVAYFTVLTKEEMLTSP-AVAVTFGGKIYKE-LVWIIPILVAMSTFGGVN 79 (220)
Q Consensus 2 ~a~E~k~p~~~~p~ai~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~ 79 (220)
.+||+|| +||+|||+..++..+.++|++.+.+..+..|.+++.+.+ +......+...|. ...++.++++++.+++.+
T Consensus 217 ~a~e~k~-~k~ip~ai~~~~~~v~~lY~l~~~~~~g~~~~~~l~~~~~p~~~~~~~~~~g~~~~~~i~~~~~is~~~~~~ 295 (468)
T TIGR03810 217 LSARAEK-RSDVGKATVIGLIGVLAIYVLVSVLSYGIMTQAQLAGLKNPSMAYVLEHMVGTWGAVLINIGLIISILGAWL 295 (468)
T ss_pred hHhhccC-cccchHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHhcCCCchHHHHHHHHcchHHHHHHHHHHHHHHHHHHH
Confidence 5799998 799999999999999999999999999999988877643 3244455555554 468899999999999999
Q ss_pred HHHhhhhHHHHHhhccCCCchhhhhhchh---------hHHHHHHHH-----hhhcHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9205 80 GILFTSARLFLTGSQEGHLPPLFSYIHIK---------ICLMSVLML-----VTSDVFALINYMSVALWLSVGACTAGLI 145 (220)
Q Consensus 80 ~~~~~~sR~l~~~a~dg~lP~~f~~~~~~---------~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 145 (220)
+++.++||++++|||||.+|++|+|+||+ +..++.+.. ..+.++.+.++++...++.|.+++++.+
T Consensus 296 ~~~~~~sR~~~a~ardg~lP~~f~k~~~~~tP~~al~~~~~i~~~~~l~~~~~~~~~~~l~~~~~~~~li~y~~~~~~~~ 375 (468)
T TIGR03810 296 SWTLLPAEIPLLMAKDKLMPKYFGKENANGAPTNALWLTNGLIQIFLLTTLFSEQAYNFAISLATSAILVPYLWSAAYQV 375 (468)
T ss_pred HHHHHHHHHHHHHHhCCCccHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999977 222222211 1256788999999999999999999999
Q ss_pred hhhccCC-CCCCCcccchHHHHHHHHHHHHHHHhhcccCchHHHHHHHHHHHhhhhhhhehhhh
Q psy9205 146 SLRFTQP-DLHRPIKVHLSLPIIFLACCIFLVVVPTIREPMNTVISLFIIASGVPVYYVCVKWK 208 (220)
Q Consensus 146 ~~r~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 208 (220)
++|+|++ +..|+++ ..++.++.+.++++++ ........++.++++.|..+|+..+|+|
T Consensus 376 ~l~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~---~~~~~~~~~~~~~~~~g~~~y~~~~~~~ 434 (468)
T TIGR03810 376 KLSWRGGQERGRRKQ--LLIGLVALLYAVWLIY---AAGLKYLLLSAILYAPGIYFYARARKEK 434 (468)
T ss_pred HHHHhcCCccchhhh--HHHHHHHHHHHHHHHH---HhhHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9987653 2223332 3667777777777775 3455667788888899998887644444
No 23
>PRK10435 cadB lysine/cadaverine antiporter; Provisional
Probab=99.95 E-value=4.9e-26 Score=193.46 Aligned_cols=201 Identities=9% Similarity=0.101 Sum_probs=146.1
Q ss_pred ccccccccccChhHHHHHHHHHHHHHHHHHHHHHHhccChhhhccchhHHHHHHHHhccc-hhHHHHHHHHHHHHHHHHH
Q psy9205 2 SKEQGFQITLNLPRAIWIAMPIVTLVYVCANVAYFTVLTKEEMLTSPAVAVTFGGKIYKE-LVWIIPILVAMSTFGGVNG 80 (220)
Q Consensus 2 ~a~E~k~p~~~~p~ai~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~ 80 (220)
.+||+|||+||+|||+..++.+++++|++.+.+.....|.+++.+++.+.....+...+. ...++.++++++++++.++
T Consensus 209 ~a~E~knP~r~iPrAi~~~~~iv~ilYil~~~~~~~~~p~~~~~~~~~p~~~~~~~~~g~~~~~~i~~~~~i~~l~~~~~ 288 (435)
T PRK10435 209 STGMVKNPKRTVPLATMLGTGLAGIIYIAATQVISGMFPASVMAASGAPFAISASTILGNWAAPLVSAFTAFACLTSLGS 288 (435)
T ss_pred HHHHhhCccccccHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhcCCCcHHHHHHHHhchhHHHHHHHHHHHHHHHHHHH
Confidence 589999999999999999999999999999999999999999866554444445555554 4678888889999999999
Q ss_pred HHhhhhHHHHHhhccCCCchhhhhhchh---------hHHHHHHHH------------hhhcHHHHHHHHHHHHHHHHHH
Q psy9205 81 ILFTSARLFLTGSQEGHLPPLFSYIHIK---------ICLMSVLML------------VTSDVFALINYMSVALWLSVGA 139 (220)
Q Consensus 81 ~~~~~sR~l~~~a~dg~lP~~f~~~~~~---------~~~~~~~~~------------~~~~~~~l~~~~~~~~~~~~~~ 139 (220)
+++..+|..++|||||.+||+|+|+||+ +++++.++. ..+.++.+.++++...++.|++
T Consensus 289 ~~~~~~r~~~~~ardG~lP~~f~k~nk~g~P~~Al~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~y~~ 368 (435)
T PRK10435 289 WMMLVGQAGVRAANDGNFPKVYGEVDKNGIPKKGLLLAAVKMTALMILITLMNSSGGKASDLFGELTGIAVLLTMLPYFY 368 (435)
T ss_pred HHHHHHHHHHHHHhCCCccHHHHhhCcCCCCHHHHHHHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999977 121111111 1134677999999999999999
Q ss_pred HHHHHHhhhccCCCCCCCcccchHHHHHHHHHHHHHHHhhcccCchHHHHHHHHHHHhhhhhhhehhhhccch
Q psy9205 140 CTAGLISLRFTQPDLHRPIKVHLSLPIIFLACCIFLVVVPTIREPMNTVISLFIIASGVPVYYVCVKWKSKPA 212 (220)
Q Consensus 140 ~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 212 (220)
++++.+++|+ ++.++++ ..+.+.++.+.+++.+. .........++.++...|+.|.++|++++
T Consensus 369 ~~~~~ir~~~--~~~~~~~--~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 431 (435)
T PRK10435 369 SCVDLIRFEG--VNIRNFV--SLICSVLGCVFCFIALM------GASSFELAGTFIVSLIILMFYARKMHERQ 431 (435)
T ss_pred HHHHHHHhcC--CchhHHH--HHHHHHHHHHHHHHHHH------HhhHHHHHHHHHHHHHHHHHHHHHhcchh
Confidence 9999886543 3332322 11555666666665553 12233333444455555555556655544
No 24
>PRK10238 aromatic amino acid transporter; Provisional
Probab=99.94 E-value=9.9e-26 Score=192.58 Aligned_cols=180 Identities=12% Similarity=0.165 Sum_probs=137.6
Q ss_pred ccccccccccChhHHHHHHHHHHHHHHHHHHHHHHhccChhhhccchhHHHHHHHHhccc-hhHHHHHHHHHHHHHHHHH
Q psy9205 2 SKEQGFQITLNLPRAIWIAMPIVTLVYVCANVAYFTVLTKEEMLTSPAVAVTFGGKIYKE-LVWIIPILVAMSTFGGVNG 80 (220)
Q Consensus 2 ~a~E~k~p~~~~p~ai~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~ 80 (220)
.+||+|||+|++|||+..++....+.|+..........|.+++.+++.+.....+...+. ...++.+.++++.+++.++
T Consensus 222 ~aeE~knP~r~iPrAi~~~~~~i~~~y~~~~~~~~~~~p~~~l~~~~sP~~~~~~~~g~~~~~~i~~~~i~~~~~s~~~~ 301 (456)
T PRK10238 222 TAAEADNPEQSIPKATNQVIYRILIFYIGSLAVLLSLMPWTRVTADTSPFVLIFHELGDTFVANALNIVVLTAALSVYNS 301 (456)
T ss_pred HHHhhcChhhHHHHHHHHHHHHHHHHHHHHHHHHheecChhccCCCCCcHHHHHHHcCChHHHHHHHHHHHHHHHHHHHH
Confidence 589999999999999999999999999988777777788888765443333333433333 4678888899999999999
Q ss_pred HHhhhhHHHHHhhccCCCchhhhhhchh---------hHHHHHHHHh------hhcHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9205 81 ILFTSARLFLTGSQEGHLPPLFSYIHIK---------ICLMSVLMLV------TSDVFALINYMSVALWLSVGACTAGLI 145 (220)
Q Consensus 81 ~~~~~sR~l~~~a~dg~lP~~f~~~~~~---------~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~~~~~~~~~ 145 (220)
.++++||++++|||||.+|++|+|+|++ +.+++.+..+ ...++.+.++++.+.+++|.++.++.+
T Consensus 302 ~~~~~sR~l~a~ardg~lP~~f~kv~~~~~P~~Ail~~~~i~~l~~l~~~~~~~~~f~~l~~~~~~~~~i~y~~~~~~~l 381 (456)
T PRK10238 302 CVYCNSRMLFGLAQQGNAPKALASVDKRGVPVNTILVSALVTALCVLINYLAPESAFGLLMALVVSALVINWAMISLAHM 381 (456)
T ss_pred HHHHHHHHHHHHHhCCCccHHHHhhCcCCCcHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999977 2222222221 245778999999999999999999999
Q ss_pred hhhccCCCC--CCCcccch--HHHHHHHHHHHHHHHhhcc
Q psy9205 146 SLRFTQPDL--HRPIKVHL--SLPIIFLACCIFLVVVPTI 181 (220)
Q Consensus 146 ~~r~~~~~~--~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 181 (220)
++||++++. +++++.|. +.+.++++++.+.++....
T Consensus 382 ~~r~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 421 (456)
T PRK10238 382 KFRRAKQEQGVVTRFPALLYPLGNWICLLFMAAVLVIMLM 421 (456)
T ss_pred HHHHHHHhcCCCCCCcCCCccHHHHHHHHHHHHHHHHHHH
Confidence 999876543 34555544 6666666666655544333
No 25
>TIGR00907 2A0304 amino acid permease (GABA permease).
Probab=99.94 E-value=3.8e-25 Score=190.41 Aligned_cols=207 Identities=17% Similarity=0.159 Sum_probs=141.7
Q ss_pred ccccccccccChhHHHHHHHHHHHHHHHHHHHHHHhcc-Chhhhccc---hhHHHHHHHHhccc--hhHHHHHHHHHHHH
Q psy9205 2 SKEQGFQITLNLPRAIWIAMPIVTLVYVCANVAYFTVL-TKEEMLTS---PAVAVTFGGKIYKE--LVWIIPILVAMSTF 75 (220)
Q Consensus 2 ~a~E~k~p~~~~p~ai~~~~~~~~~~y~~~~~~~~~~~-~~~~~~~~---~~~~~~~~~~~~g~--~~~~~~~~~~~~~~ 75 (220)
.+||+|||+||+|||+..++.+..+++++......... +.+++.++ ++..+.+ ....|. ...++.+.++++.+
T Consensus 239 ~a~E~knP~r~iP~Ai~~s~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~p~~~~~-~~~~g~~~~~~~~~~~~~~~~~ 317 (482)
T TIGR00907 239 MAEEIENPEVVGPRAIIGAVAIGIVTGFCFNIVLFFSMGDIDSLISSTTGQPIAQIF-YNALGNKAGAIFLLCLILVTSF 317 (482)
T ss_pred HHHhcCChhhhcCHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHhcCCCCChHHHHH-HHHhCCchHHHHHHHHHHHHHH
Confidence 58999999999999999999887765554444333333 33433332 2333433 333333 34677888889999
Q ss_pred HHHHHHHhhhhHHHHHhhccCCCc--hhhhhhchh----------hHHHHHHHHh-----hhcHHHHHHHHHHHHHHHHH
Q psy9205 76 GGVNGILFTSARLFLTGSQEGHLP--PLFSYIHIK----------ICLMSVLMLV-----TSDVFALINYMSVALWLSVG 138 (220)
Q Consensus 76 ~~~~~~~~~~sR~l~~~a~dg~lP--~~f~~~~~~----------~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~~ 138 (220)
++.++.+.+.||++++|||||.+| ++|+|+||| +.+++.+... .++++.+.+++++..++.|.
T Consensus 318 ~~~~~~~~~~sR~l~a~ardg~lP~~~~f~~v~~~~~~P~~ai~~~~~i~~~~~~~~~~~~~~f~~l~~~~~~~~~i~y~ 397 (482)
T TIGR00907 318 FCAITCMTANSRMIYAFSRDGGLPFSPLWSRVNPRTQVPLNAVWLSAVWIILIGLLGLGSSTAFQAIFSVCTVALDVSYV 397 (482)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCcCchHhhceeCCCCCCcHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999 999999987 2222222221 24678899999999999999
Q ss_pred HHHHHHHhhhccCCCCCCCcccch---HHHHHHHHHHHHHHHhhcccC---------chHHHHHHHHHHHhhhhhhhehh
Q psy9205 139 ACTAGLISLRFTQPDLHRPIKVHL---SLPIIFLACCIFLVVVPTIRE---------PMNTVISLFIIASGVPVYYVCVK 206 (220)
Q Consensus 139 ~~~~~~~~~r~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~g~~~~~~~~~ 206 (220)
+...+.++.||+ ++.+||||.+. ++..++++.+.+.++....+. .+...+..+.++++.++|....|
T Consensus 398 ~~~~~~l~~~~~-~~~~~~f~lg~~~~~~~~~~~~~~~~~~v~~~~P~~~p~~~~~~ny~~~~~~~~~~~~~~~~~~~~r 476 (482)
T TIGR00907 398 IPIICKLAKGRN-TIAPGPFWLGKYGFFVNAVAVAWTVFSSVLFSFPPVLPVTPENMNYAVVVFAGVLAISLVYWKYKGR 476 (482)
T ss_pred HHHHHHHHhcCC-CCCCCCCcCCcchHHHHHHHHHHHHHHHhheeCCCCCCCCcccCChHhHHHHHHHHHHHHHheEece
Confidence 988777654443 45678999854 455566666665555433332 24455556667777777766555
Q ss_pred hhcc
Q psy9205 207 WKSK 210 (220)
Q Consensus 207 ~~~~ 210 (220)
++.+
T Consensus 477 ~~~~ 480 (482)
T TIGR00907 477 KEFT 480 (482)
T ss_pred eecc
Confidence 5444
No 26
>PRK11021 putative transporter; Provisional
Probab=99.94 E-value=3.4e-25 Score=187.07 Aligned_cols=169 Identities=18% Similarity=0.250 Sum_probs=131.1
Q ss_pred CccccccccccChhHHHHHHHHHHHHHHHHHHHHHHhccChhhhccchhHHHHHHHHhccc-hhHHHHHHHHHHHHHHHH
Q psy9205 1 MSKEQGFQITLNLPRAIWIAMPIVTLVYVCANVAYFTVLTKEEMLTSPAVAVTFGGKIYKE-LVWIIPILVAMSTFGGVN 79 (220)
Q Consensus 1 ~~a~E~k~p~~~~p~ai~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~ 79 (220)
+.+||+|||+||+|||+..++..++++|++.+.+.....+.++..+++.+.....++.+|. ...++.+..+++.+++.+
T Consensus 198 ~~a~E~k~P~k~iPrAi~~~~~~~~~lYil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~ii~i~~~~s~~~~~~ 277 (410)
T PRK11021 198 HLASEFKNPERDFPRALMIGLLLAGLVYWACTVVVLHFPAYGDKQAAAASLPGIFVQLFGGYALWVICVIGYLACFASVN 277 (410)
T ss_pred hhHHhccCccccccHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhhccccHHHHHHHHhCchhHHHHHHHHHHHHHHHHH
Confidence 3589999999999999999999999999999888766665544333222333334444454 346778888899999999
Q ss_pred HHHhhhhHHHHHhhccCCCchhhhhhchh---------hHHHHHHHH-----hhhcHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9205 80 GILFTSARLFLTGSQEGHLPPLFSYIHIK---------ICLMSVLML-----VTSDVFALINYMSVALWLSVGACTAGLI 145 (220)
Q Consensus 80 ~~~~~~sR~l~~~a~dg~lP~~f~~~~~~---------~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 145 (220)
+.+.+.||++++|||||.+|++|+|+||+ +..++.+.. ...+++.+.+.++...++.|.++.++.+
T Consensus 278 ~~~~~~sR~l~a~ardg~lP~~~~k~~~~~tP~~ail~~~~i~~~~~l~~~~~~~~~~~l~~~~~~~~li~y~~~~~a~~ 357 (410)
T PRK11021 278 IYTQSFARLVWSQAREGRPPSYLARLSARGVPVNALNAVLGCCAVSILLIYALGLNLEALIAYANGIFVLIYLLCMLAAC 357 (410)
T ss_pred HHHHHHHHHHHHHHccCCccHHHHhhccCCCcHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999977 222222211 2357888999999999999999999999
Q ss_pred hhhccCCCCCCCcccchHHHHHHHHHHHHHHHh
Q psy9205 146 SLRFTQPDLHRPIKVHLSLPIIFLACCIFLVVV 178 (220)
Q Consensus 146 ~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (220)
+++++++ ..+++++.+.|.+++..
T Consensus 358 ~l~~~~~---------~~~~~~~~~~~~~~~~~ 381 (410)
T PRK11021 358 KLLKGRY---------RPLAVLGCLLCLLLLVM 381 (410)
T ss_pred HHhccch---------HHHHHHHHHHHHHHHHH
Confidence 8876531 15788888888888753
No 27
>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism]
Probab=99.94 E-value=4.6e-25 Score=184.73 Aligned_cols=180 Identities=16% Similarity=0.243 Sum_probs=145.8
Q ss_pred ccccccccccChhHHHHHHHHHHHHHHHHHHHHHHhccChhh--hc-------cchhHHHHHHHHhccchhHHHHHHHHH
Q psy9205 2 SKEQGFQITLNLPRAIWIAMPIVTLVYVCANVAYFTVLTKEE--ML-------TSPAVAVTFGGKIYKELVWIIPILVAM 72 (220)
Q Consensus 2 ~a~E~k~p~~~~p~ai~~~~~~~~~~y~~~~~~~~~~~~~~~--~~-------~~~~~~~~~~~~~~g~~~~~~~~~~~~ 72 (220)
+|+|++||+|++|||+.-......++|++..+.+...+|+++ +. ..+|....+.+...+.++.+++.++++
T Consensus 256 aAgEs~nP~K~iPkAik~vfwRIl~FYi~si~~ig~lvPy~dp~Ll~~~~~~~~~SPFvia~~~~Gi~~~~~imNaVIL~ 335 (541)
T COG0833 256 AAGESENPRKSIPKAIKQVFWRILLFYILSIFVIGLLVPYNDPRLLGNSSSGVAASPFVIAIKNAGIPVAASIMNAVILT 335 (541)
T ss_pred eecccCCchhhhHHHHHHHHHHHHHHHHHHHHHheEEccCCCcccccCCcCCccCCChhHhHHhcCCccchHHHHHHHHH
Confidence 689999999999999999999999999999999999998766 22 123444444445555578999999999
Q ss_pred HHHHHHHHHHhhhhHHHHHhhccCCCchhhhhhchh---------hHHHHHHHHhh------hcHHHHHHHHHHHHHHHH
Q psy9205 73 STFGGVNGILFTSARLFLTGSQEGHLPPLFSYIHIK---------ICLMSVLMLVT------SDVFALINYMSVALWLSV 137 (220)
Q Consensus 73 ~~~~~~~~~~~~~sR~l~~~a~dg~lP~~f~~~~~~---------~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~ 137 (220)
+.+++.|+.++++||++|+||+||..||.|+|+|++ +.+++++..+. ..++++.++++++.++.+
T Consensus 336 svlSa~NS~lYasSR~L~sLA~~g~APk~f~~~~r~GvP~~al~vt~~fg~lafl~~~~~~~~vf~wL~~isg~s~~i~W 415 (541)
T COG0833 336 SVLSAANSGLYASSRMLYSLAKQGKAPKIFAKVDRRGVPLVALLVTLLFGLLAFLNSSFKETTVFNWLLNISGLSGFIAW 415 (541)
T ss_pred HHHHHhhccchHHHHHHHHHHhcCCCchHHHhhCCCCCchHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999 22222222221 247789999999999999
Q ss_pred HHHHHHHHhhhccC---C-C-CCCCcccch--HHHHHHHHHHHHHHHhhcc
Q psy9205 138 GACTAGLISLRFTQ---P-D-LHRPIKVHL--SLPIIFLACCIFLVVVPTI 181 (220)
Q Consensus 138 ~~~~~~~~~~r~~~---~-~-~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 181 (220)
..++++.+++||.. . + .+-|||.|. +.++.+++.++.+++...+
T Consensus 416 ~~I~~shirFR~A~~~QG~s~~~L~yks~~~p~g~~~~~~~~~li~i~q~y 466 (541)
T COG0833 416 GSICLSHIRFRRAMKAQGRSLDELPYKSPFGPYGPIYGLILCILILIGQGY 466 (541)
T ss_pred HHHHHHHHHHHHHHHHcCCChhhcCccCCCccHHHHHHHHHHHHHHHHcch
Confidence 99999999999732 1 1 235899888 8899999988888876333
No 28
>TIGR00930 2a30 K-Cl cotransporter.
Probab=99.93 E-value=1.1e-24 Score=197.98 Aligned_cols=209 Identities=11% Similarity=0.099 Sum_probs=157.2
Q ss_pred ccccccccccChhHHHHHHHHHHHHHHHHHHHHHHhccChhhhccch-hHH----------------------HHH-HHH
Q psy9205 2 SKEQGFQITLNLPRAIWIAMPIVTLVYVCANVAYFTVLTKEEMLTSP-AVA----------------------VTF-GGK 57 (220)
Q Consensus 2 ~a~E~k~p~~~~p~ai~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~-~~~----------------------~~~-~~~ 57 (220)
.|||+|||+|++|||++.++.+++++|++.++++....+.+...+.+ ... ..+ ...
T Consensus 302 ~sgElKnP~r~IPratl~ai~i~~vlYllv~~~~~~~~~~d~~~~~~~~l~~~~~g~~~f~~~~~~p~~~gL~~~~~~~~ 381 (953)
T TIGR00930 302 ISGDLKDPQKAIPKGTLLAILTTTVVYLGSVVLFGACVVRDATGDKNDTLVTNCTSAACFSECAHNTCSYGLMNNLQVMS 381 (953)
T ss_pred HHHhccChhhhhHHHHHHHHHHHHHHHHHHHHHHHccccHhhhcccchhhhcccccchhhhhhcccchhhhhcchHHHHh
Confidence 58999999999999999999999999999998777777655432211 110 001 111
Q ss_pred hccchhHHHHHHHHHHHHHHHHHHHhhhhHHHHHhhccCCCc--hhhhhhchh----------hHHHHHHHHhhhcHHHH
Q psy9205 58 IYKELVWIIPILVAMSTFGGVNGILFTSARLFLTGSQEGHLP--PLFSYIHIK----------ICLMSVLMLVTSDVFAL 125 (220)
Q Consensus 58 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~dg~lP--~~f~~~~~~----------~~~~~~~~~~~~~~~~l 125 (220)
.....+.++.++++++.+++.++++.+++|++++|||||.+| ++|+|+|+| +++++.++...++++.+
T Consensus 382 ~~~~~~~lI~ig~~~stlss~la~l~~asRvl~AmArDg~lP~l~~fakv~~k~~tP~~Alllt~iIa~l~ili~~l~~i 461 (953)
T TIGR00930 382 LVSPFPPLITAGIFSATLSSALASLVSAPRLFQALCKDNIYPFLQFFGKGYGKNGEPLRAYLLTAFIAEGFILIAELNTI 461 (953)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhhcccCCCCCCcHHHHHHHHHHHHHHHHHHhHHHH
Confidence 112245789999999999999999999999999999999999 899999976 44556666666789999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccC-CCCCCCcccch-HHHHHHHHHHHHHHHhhcccCchHHHHHHHHHHHhhhhhhh
Q psy9205 126 INYMSVALWLSVGACTAGLISLRFTQ-PDLHRPIKVHL-SLPIIFLACCIFLVVVPTIREPMNTVISLFIIASGVPVYYV 203 (220)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~r~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 203 (220)
..+.+...+++|++++++++++|.++ |+.++.||... +++.++.+.|+++++.. .+...+..++++..+|++
T Consensus 462 a~lis~~fLl~Y~lvnla~~~l~~~~~p~~RP~fk~~~~~~sllG~l~c~~lmf~i------~w~~ali~~~i~~~ly~~ 535 (953)
T TIGR00930 462 APIISNFFLASYALINFSCFHASLLRSPGWRPRFKYYHWWLSLLGASLCCAIMFLI------SWWAALVAMVIALFLYKY 535 (953)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCccccchHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999988554 44433355433 88999999998888642 233444445556666777
Q ss_pred ehhhhccchhhhh
Q psy9205 204 CVKWKSKPALLLE 216 (220)
Q Consensus 204 ~~~~~~~~~~~~~ 216 (220)
+.+++.+.+|++.
T Consensus 536 ~~~~~~~~~wg~~ 548 (953)
T TIGR00930 536 VTYKKPDVNWGSS 548 (953)
T ss_pred hhccCCCCCcchH
Confidence 6777777777753
No 29
>KOG1286|consensus
Probab=99.92 E-value=1.1e-23 Score=181.12 Aligned_cols=151 Identities=15% Similarity=0.245 Sum_probs=125.1
Q ss_pred CccccccccccChhHHHHHHHHHHHHHHHHHHHHHHhccChhh--hccchhHHHHHH-HHhccc---hhHHHHHHHHHHH
Q psy9205 1 MSKEQGFQITLNLPRAIWIAMPIVTLVYVCANVAYFTVLTKEE--MLTSPAVAVTFG-GKIYKE---LVWIIPILVAMST 74 (220)
Q Consensus 1 ~~a~E~k~p~~~~p~ai~~~~~~~~~~y~~~~~~~~~~~~~~~--~~~~~~~~~~~~-~~~~g~---~~~~~~~~~~~~~ 74 (220)
+.+||+|||+|++|+|+..++..+..+|++....+...+|+++ +.++.+....+. .....+ ...+++++++++.
T Consensus 253 ~~a~E~kNP~k~IP~ai~~s~~ri~~~Yi~~~~~l~l~vpy~~~~L~~~~~~~spF~iai~~~~~k~~~~ivna~iL~~~ 332 (554)
T KOG1286|consen 253 TTAEEAKNPRKAIPKAIKQSLLRILLFYILSSIVLGLLVPYNDPRLDPGAALASPFVIAIGNAGAKYLPHIVNAGILIGL 332 (554)
T ss_pred HHHHhccCCcccccHHHHHHHHHHHHHHHHHHHHheEEeccCccccCCCCccccHHHHHHhccCccccchhhhHHHHHHH
Confidence 4689999999999999999999999999999999999999988 766554333333 222222 3459999999999
Q ss_pred HHHHHHHHhhhhHHHHHhhccCCCchhhhhhchh---------hHHHHHHHHhh------hcHHHHHHHHHHHHHHHHHH
Q psy9205 75 FGGVNGILFTSARLFLTGSQEGHLPPLFSYIHIK---------ICLMSVLMLVT------SDVFALINYMSVALWLSVGA 139 (220)
Q Consensus 75 ~~~~~~~~~~~sR~l~~~a~dg~lP~~f~~~~~~---------~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~~~ 139 (220)
++++|+.+++++|.+++||+||++||+|+++|++ ..+++.+.... ..++++.++.+++.++.|.+
T Consensus 333 ~s~~n~~~y~~sR~l~amA~~G~~Pk~f~~v~~~g~P~~a~~v~~~~~~l~~~~~~~~~~~~f~~L~~~~si~tl~~w~~ 412 (554)
T KOG1286|consen 333 LSSLNSSLYAGSRVLYALAKDGLAPKFFARVDRRGVPLVAVLVSGLFGALAALNFSLGAATVFNWLVNLSSIGTLFAWTL 412 (554)
T ss_pred HHHHHHHhHHhHHHHHHHHhcCCcchHHhhcCCCCCchhHHHHHHHHHHHHHHHhccccchHHHHHHHHHhHHHHHHHHH
Confidence 9999999999999999999999999999999999 22233333322 23689999999999999999
Q ss_pred HHHHHHhhhccC
Q psy9205 140 CTAGLISLRFTQ 151 (220)
Q Consensus 140 ~~~~~~~~r~~~ 151 (220)
++++++++|+..
T Consensus 413 i~~~~i~~R~a~ 424 (554)
T KOG1286|consen 413 VALSHLRFRYAM 424 (554)
T ss_pred HHHHHeeeeecc
Confidence 999999998853
No 30
>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism]
Probab=99.91 E-value=6.2e-23 Score=175.74 Aligned_cols=161 Identities=27% Similarity=0.376 Sum_probs=132.7
Q ss_pred ccccccccccChhHHHHHHHHHHHHHHHHHHHHHHhccChhhhccc-h-hHHHHHHHHhcc-chhHHHHHHHHHHHHHHH
Q psy9205 2 SKEQGFQITLNLPRAIWIAMPIVTLVYVCANVAYFTVLTKEEMLTS-P-AVAVTFGGKIYK-ELVWIIPILVAMSTFGGV 78 (220)
Q Consensus 2 ~a~E~k~p~~~~p~ai~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~ 78 (220)
.+||+|||+|++|||++.+++.++++|++.+.+.....|.+++..+ + .+.........| +...++.+...++.+++.
T Consensus 223 ~a~E~knp~r~ip~aii~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~g~~~~~~i~~~~~~~~~~~~ 302 (466)
T COG0531 223 LAEEVKNPKRTIPRAIILSLLIVLILYILGALVIVGVLPAGDLAASAPSAPLALAALFGGGNWGAIIIAILALLSLFGSL 302 (466)
T ss_pred HHHHhcCccccccHHHHHHHHHHHHHHHHHHHHHHhCccHHHHhccCCCccHHHHHHHcCccHHHHHHHHHHHHHHHHHH
Confidence 5799999999999999999999999999999999999998665543 1 233334444444 567899999999999999
Q ss_pred HHHHhhhhHHHHHhhccCCCchhhhhhchh----------hHHHHH-HHHhh----hcHHHHHHHHHHHHHHHHHHHHHH
Q psy9205 79 NGILFTSARLFLTGSQEGHLPPLFSYIHIK----------ICLMSV-LMLVT----SDVFALINYMSVALWLSVGACTAG 143 (220)
Q Consensus 79 ~~~~~~~sR~l~~~a~dg~lP~~f~~~~~~----------~~~~~~-~~~~~----~~~~~l~~~~~~~~~~~~~~~~~~ 143 (220)
++...+.+|.+++|+|||.+|++|+|+|+| ..+++. ..... ..++.+.++.+...++.|.+...+
T Consensus 303 ~~~~~~~sR~~~~~ardg~lP~~~~~~~~~~~~P~~a~~~~~ii~~~l~~~~~~~~~~~~~l~~~~~~~~~~~y~~~~~~ 382 (466)
T COG0531 303 LAWILAVSRVLYAMARDGLLPKFFAKVNPKGRTPVIALILTGIISLILLLLFPLSSIAFNALVSLASVAFLIAYLLVALA 382 (466)
T ss_pred HHHHHHHHHHHHHHHhCCCccHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999988 333333 22221 246789999999999999999999
Q ss_pred HHhhhccCCCCCCCcccch
Q psy9205 144 LISLRFTQPDLHRPIKVHL 162 (220)
Q Consensus 144 ~~~~r~~~~~~~~~~~~~~ 162 (220)
.+++|+++++.+|+++.+.
T Consensus 383 ~~~~~~~~~~~~~~~~~~~ 401 (466)
T COG0531 383 LLVLRRKKPDLKRPFRLPL 401 (466)
T ss_pred HHHHhhcCCCCCCcccccc
Confidence 9999998887778877765
No 31
>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]
Probab=99.91 E-value=3.2e-24 Score=176.40 Aligned_cols=205 Identities=14% Similarity=0.147 Sum_probs=156.3
Q ss_pred ccccccccccChhHHHHHHHHHHHHHHHHHHHHHHhccChhhhccch-hHHHHHHHHhccchhHHHHHHHHHHHHHHHHH
Q psy9205 2 SKEQGFQITLNLPRAIWIAMPIVTLVYVCANVAYFTVLTKEEMLTSP-AVAVTFGGKIYKELVWIIPILVAMSTFGGVNG 80 (220)
Q Consensus 2 ~a~E~k~p~~~~p~ai~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 80 (220)
.|+|+|||+|++|||+-.......++|+..........|+++..++. |....+.....+..+.++++.++.+.+++.|+
T Consensus 225 tA~Et~dP~k~ipkAin~V~~RI~iFYvgsl~vi~~l~PW~~~~~~~SPFV~~f~~iGi~~Aa~i~N~VVLtAa~S~~NS 304 (462)
T COG1113 225 TAAEAKDPEKAIPKAINSVIWRILIFYVGSLFVILSLYPWNQIGEDGSPFVTVFSLIGIPFAAGIMNFVVLTAALSALNS 304 (462)
T ss_pred HHHhhcChhhHHHHHHhhhhHHHHHHHHHHHHHHheeccccccCCCCCcHHHHHHHcCCcccccceeEEEeechhhcccc
Confidence 58999999999999999999999999999999999999999877755 55666655667777899999999999999999
Q ss_pred HHhhhhHHHHHhhccCCCchhhhhhchh-----hHHHHHH-------HH---hhhcHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9205 81 ILFTSARLFLTGSQEGHLPPLFSYIHIK-----ICLMSVL-------ML---VTSDVFALINYMSVALWLSVGACTAGLI 145 (220)
Q Consensus 81 ~~~~~sR~l~~~a~dg~lP~~f~~~~~~-----~~~~~~~-------~~---~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 145 (220)
.+++.+|++|++|+||..||.|+|.|++ ..+++.. +. ....|+.+.+.++...+..|.++.++.+
T Consensus 305 glystsRmL~~la~~g~APk~~~klsk~gVP~~ai~~s~~~~~~~V~Lny~~P~~vF~~v~s~s~~~~l~vW~~I~~s~l 384 (462)
T COG1113 305 GLYSTSRMLYSLAKQGDAPKAFAKLSKRGVPVNAILLSAVVLLLGVVLNYILPEKVFELVTSSSGLGLLFVWLMILLSQL 384 (462)
T ss_pred cccccchHHHHHhhcCcccHhHhhccccCCCHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999 1111111 11 1244667889999999999999999999
Q ss_pred hhhccCCCC--CCCcccch--HHHHHHHHHHHHHHHhhcccCc--hHHHHHHHHHHHhhhhhhhehh
Q psy9205 146 SLRFTQPDL--HRPIKVHL--SLPIIFLACCIFLVVVPTIREP--MNTVISLFIIASGVPVYYVCVK 206 (220)
Q Consensus 146 ~~r~~~~~~--~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~g~~~~~~~~~ 206 (220)
++||++++. +.+||+|. +...+.+++.+++++.....+. .....+..++++-.+.|+..++
T Consensus 385 ~~rk~~~~~~~~~~fkm~~~p~~~~l~l~fl~~vlv~m~~~~~t~~~~~~~~~~~~~l~i~~~~~~~ 451 (462)
T COG1113 385 KLRKAKPAEGKKLKFKMPLYPFTNYLTLAFLAFVLVLMLFDPDTRISLLVGPVWLVLLGIGYLVKRK 451 (462)
T ss_pred HHHhcchhcccCcccccccccHHHHHHHHHHHHHHHHHHcCcccchHHHHHHHHHHHHHHHHHHhhh
Confidence 999965443 34588886 4555555544444433333332 3455566665555555554433
No 32
>PRK15238 inner membrane transporter YjeM; Provisional
Probab=99.91 E-value=1.1e-22 Score=175.59 Aligned_cols=179 Identities=15% Similarity=0.204 Sum_probs=128.1
Q ss_pred ccccccccccChhHHHHHHHHHHHHHHHHHHHHHHhccChhhhccch--h----HHH---HHH-------------HHhc
Q psy9205 2 SKEQGFQITLNLPRAIWIAMPIVTLVYVCANVAYFTVLTKEEMLTSP--A----VAV---TFG-------------GKIY 59 (220)
Q Consensus 2 ~a~E~k~p~~~~p~ai~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~--~----~~~---~~~-------------~~~~ 59 (220)
.+||+|||+|++|||+..+...++++|++.........|.++..+++ + +.. ... ....
T Consensus 233 ~a~E~~~p~~~~p~ai~~~~~~~~~~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~ 312 (496)
T PRK15238 233 LVDKTENPEKNFPKGIIIAAIVISIGYSLAIFLWGVSTNWQQVLSNKSVNLGNITYVLMNNLGYTLGHALGLSPAASLTL 312 (496)
T ss_pred HHHhccCCCccccHHHHHHHHHHHHHHHHHHHHHHhcCchhhcCCccccchhccHHHHHHHHHHHHHHHhccchhhhhhh
Confidence 58999999999999999999999999999888777777766644321 1 000 000 0011
Q ss_pred cc-hhHHHHHHHHHHHHHHHHHHHhhhhHHHHHhhccCCCchhhhhhchh---------hHHHHHHHH-h--hh------
Q psy9205 60 KE-LVWIIPILVAMSTFGGVNGILFTSARLFLTGSQEGHLPPLFSYIHIK---------ICLMSVLML-V--TS------ 120 (220)
Q Consensus 60 g~-~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~dg~lP~~f~~~~~~---------~~~~~~~~~-~--~~------ 120 (220)
+. ...++.+..+++.+++.++..++.+|.+++++|||.+|++|+|+||+ +.+++.+.. . .+
T Consensus 313 g~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~g~~P~~f~k~nk~g~P~~a~~~~~~i~~l~~~~~~~~~~~~~~ 392 (496)
T PRK15238 313 GVWFARITGLSMFLAYTGAFFTLSYSPLKQLIEGTPKALWPKKMTKLNKNGMPANAMWLQCIIVSVFILLVSFGGDAASA 392 (496)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhCccCcccHHHHhhCcCCCcHHHHHHHHHHHHHHHHHHHhCchhHHH
Confidence 11 23466777888999999999999999999999999999999999976 222222221 1 11
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCcccch------HHHHHHHHHHHHHHHhhcc
Q psy9205 121 DVFALINYMSVALWLSVGACTAGLISLRFTQPDLHRPIKVHL------SLPIIFLACCIFLVVVPTI 181 (220)
Q Consensus 121 ~~~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~ 181 (220)
.++.+.++++...++.|.+..++++++|| +|+.+||++.+. +..+++++.+++.......
T Consensus 393 ~f~~l~~l~~~~~li~y~~~~~a~i~~r~-~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 458 (496)
T PRK15238 393 FFNILTLMANVSMTLPYLFLAGAFPFFKK-KKDIDRPFVVFKTKKSTLIATIVVVLVVGFANVFTII 458 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh-ccCCCCCceecCCcceehhHHHHHHHHHHHHHHHhee
Confidence 15679999999999999999999999877 567778776631 4555555555554444433
No 33
>TIGR03428 ureacarb_perm permease, urea carboxylase system. A number of bacteria obtain nitrogen by biotin- and ATP-dependent urea degradation system distinct from urease. The two characterized proteins of this system are the enzymes urea carboxylase and allophanate hydrolase, but other, uncharacterized proteins co-occur as genes encoded nearby in multiple organisms. This family includes predicted permeases of the amino acid permease family, likely to transport either urea or a compound from which urea is derived. It is found so far only Actinobacteria, whereas a number of other species with the urea carboxylase have an adjacent ABC transporter operon.
Probab=99.90 E-value=9.2e-22 Score=169.09 Aligned_cols=180 Identities=16% Similarity=0.182 Sum_probs=123.3
Q ss_pred ccccccccccChhHHHHHHHHHHHHHHHHHHHHHHhccCh-hh-hccchhHHHHHHHHhcc-chhHHHHHHHHHHHHHHH
Q psy9205 2 SKEQGFQITLNLPRAIWIAMPIVTLVYVCANVAYFTVLTK-EE-MLTSPAVAVTFGGKIYK-ELVWIIPILVAMSTFGGV 78 (220)
Q Consensus 2 ~a~E~k~p~~~~p~ai~~~~~~~~~~y~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~ 78 (220)
.+||+|||+||+|||+..++.+.+++|.+..+......+. ++ ..+++.....+ .+..+ ..+..+.+..+++.+++.
T Consensus 235 ~aeE~knP~r~iPrai~~s~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~-~~~~g~~~~~~~~~~~~i~~~~~~ 313 (475)
T TIGR03428 235 LSEETKNPRRVAPRTILTALSVSALGGGLMILGALMAAPSLTDGRLAAEGLPYVL-SAVLDSPWGTVLLVDVAIAILVCT 313 (475)
T ss_pred HHHHhcCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHhhcCCCchHHHH-HHHhCcHhHHHHHHHHHHHHHHHH
Confidence 5899999999999999999999988777766666554443 11 11222222222 23333 344555566778999999
Q ss_pred HHHHhhhhHHHHHhhccCCCc--hhhhhhchh----------hHHHHHHHHh-----hhcHHHHHHHHHHHHHHHHHHHH
Q psy9205 79 NGILFTSARLFLTGSQEGHLP--PLFSYIHIK----------ICLMSVLMLV-----TSDVFALINYMSVALWLSVGACT 141 (220)
Q Consensus 79 ~~~~~~~sR~l~~~a~dg~lP--~~f~~~~~~----------~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~~~~~ 141 (220)
++.+.+.||++|+|||||.+| ++|+|+||| ..+++.++.. ...++.+.++++...+++|.+..
T Consensus 314 ~~~~~~~sR~~~a~Ardg~lP~s~~~~~v~~r~~tP~~A~~l~~~i~~~~~~i~~~~~~af~~l~s~~~~~~~~~Y~~~~ 393 (475)
T TIGR03428 314 LAIQTAGSRLMFSMARDGKLPASAQLSRVHPRTGTPILPSIVIGVLCIGILLINVGNSALFATLASVCIVLIYLAYLLVT 393 (475)
T ss_pred HHHHHHHHHHHHHHHhcCCCcchHHhcccCCCCCCcHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999 489999976 2233332222 24577899999999999999987
Q ss_pred HHHHhhhccC------CCCCCCcccch---HHHHHHHHHHHHHHHhhccc
Q psy9205 142 AGLISLRFTQ------PDLHRPIKVHL---SLPIIFLACCIFLVVVPTIR 182 (220)
Q Consensus 142 ~~~~~~r~~~------~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 182 (220)
+..+..|+++ +..++||+++. .++++++++.++..+....+
T Consensus 394 ~~~l~~~~~~~~~~~~~~~~g~f~lg~~g~~vn~~a~~~~~~~~v~~~~P 443 (475)
T TIGR03428 394 VPLLLRRLRGWPRGDQTDPAGLFSLGRWGLPVNILAVVYGALMVVNLSWP 443 (475)
T ss_pred HHHHHHHHhccCCccCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHCC
Confidence 7766554332 12467898885 45555555555444443333
No 34
>KOG1289|consensus
Probab=99.90 E-value=5.9e-23 Score=171.86 Aligned_cols=209 Identities=15% Similarity=0.161 Sum_probs=151.8
Q ss_pred CccccccccccChhHHHHHHHHHHHHHHHHHHHHHHhccCh--hhhccch--hHHHHHHHHhccc-hhHHHHHHHHHHHH
Q psy9205 1 MSKEQGFQITLNLPRAIWIAMPIVTLVYVCANVAYFTVLTK--EEMLTSP--AVAVTFGGKIYKE-LVWIIPILVAMSTF 75 (220)
Q Consensus 1 ~~a~E~k~p~~~~p~ai~~~~~~~~~~y~~~~~~~~~~~~~--~~~~~~~--~~~~~~~~~~~g~-~~~~~~~~~~~~~~ 75 (220)
+.+||+|||+|+.||||+.++.+.+++.++..+.+....++ +.+.+++ .+...+..+..|. ....+..+.+++.+
T Consensus 273 H~aEE~~nAsk~aPrgIi~s~~i~~i~gw~~~I~i~~~i~~D~~~v~ns~~g~p~~~i~~~~lg~k~~v~~~~l~ii~~f 352 (550)
T KOG1289|consen 273 HMAEETKNASKAAPRGIISSIAIGFILGWIIIIGIAYTIPDDLDAVLNSSLGQPIVQIYYQALGKKGAVFLLSLIIIALF 352 (550)
T ss_pred HHHHHhcchhhhccHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHhcCCCCChHHHHHHHhcCCCceEehhHHHHHHHH
Confidence 35899999999999999999999999999888888777763 2333322 3344444455554 45777888888999
Q ss_pred HHHHHHHhhhhHHHHHhhccCCCc--hhhhhhchh----------hHHHHHHHH-----hhhcHHHHHHHHHHHHHHHHH
Q psy9205 76 GGVNGILFTSARLFLTGSQEGHLP--PLFSYIHIK----------ICLMSVLML-----VTSDVFALINYMSVALWLSVG 138 (220)
Q Consensus 76 ~~~~~~~~~~sR~l~~~a~dg~lP--~~f~~~~~~----------~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~~ 138 (220)
-++.+.+.++||+.|+.+|||.+| ++++++||+ ..+++.++. ...+++++++.+.++.+++|.
T Consensus 353 ~~gi~s~~a~SR~v~afaRDg~LP~S~~~~~v~~~t~~P~nAv~l~~i~s~llgll~L~s~~Af~Alfs~a~i~l~~Ay~ 432 (550)
T KOG1289|consen 353 FMGISSLTASSRLVYAFARDGGLPFSKYLAKVNPQTKVPLNAVLLSCIISILLGLLILASATAFNALFSAAAIALFIAYA 432 (550)
T ss_pred HhhHHHHHHHHHHHhhhhccCCCCCcceeeecCCCCCCcHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999 999999999 222222222 235788999999999999999
Q ss_pred HHHHHHHhhhccCCCCCCCcccch------HHHHHHHHHHHHHHHhhcccCc------hHHHHHHHHHHHhhhhhhhehh
Q psy9205 139 ACTAGLISLRFTQPDLHRPIKVHL------SLPIIFLACCIFLVVVPTIREP------MNTVISLFIIASGVPVYYVCVK 206 (220)
Q Consensus 139 ~~~~~~~~~r~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~g~~~~~~~~~ 206 (220)
...++.+.++|+ .-.++||+.++ ++.+.+.++++..+.+|...++ ++..+..+.++..+++|+...|
T Consensus 433 iP~~~rlf~~r~-~f~~gp~~lGk~s~p~~~i~v~w~lf~~vil~fP~~~pvT~~~MNya~VV~gg~~lf~li~~~~~~~ 511 (550)
T KOG1289|consen 433 IPIFCRLFFGRD-DFRPGPFNLGKFSKPIGIIAVLWVLFMIVILCFPSVYPVTADNMNYACVVYGGVMLFCLIYYFVSAR 511 (550)
T ss_pred HhHHhheeeccc-ccCCCCccccccccchHHHHHHHHHHHHHHHhCCcccCCCcccCceEEEeehhhhhhhhheeeeecc
Confidence 887776666665 34456766654 5566667777777776665544 3445555666777767766544
Q ss_pred hhcc
Q psy9205 207 WKSK 210 (220)
Q Consensus 207 ~~~~ 210 (220)
+..+
T Consensus 512 k~f~ 515 (550)
T KOG1289|consen 512 KWFK 515 (550)
T ss_pred eeec
Confidence 4333
No 35
>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [], [], []. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. This domain is found in a wide variety of permeases, as well as several hypothetical proteins. ; GO: 0006810 transport, 0055085 transmembrane transport, 0016020 membrane
Probab=99.89 E-value=1.1e-23 Score=181.19 Aligned_cols=151 Identities=19% Similarity=0.240 Sum_probs=117.6
Q ss_pred CccccccccccChhHHHHHHHHHHHHHHHHHHHHHHhccChhhhccch-----hHHHHHHHHhc-cchhHHHHHHHHHHH
Q psy9205 1 MSKEQGFQITLNLPRAIWIAMPIVTLVYVCANVAYFTVLTKEEMLTSP-----AVAVTFGGKIY-KELVWIIPILVAMST 74 (220)
Q Consensus 1 ~~a~E~k~p~~~~p~ai~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~-g~~~~~~~~~~~~~~ 74 (220)
+.+||+|||||++|||+..+++.++++|++..++.....|.++....+ ++.....+... ++...++.++.+++.
T Consensus 221 ~~a~E~k~P~k~IPra~~~~~~~~~v~y~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~i~~~~~l~s~ 300 (478)
T PF00324_consen 221 ILAEEAKNPRKTIPRATLLSVLRIGVFYVLTSYALTLAVPYDNLGLTAASNSASPFVIAAQYSGGPWLAWIVNAGILISA 300 (478)
T ss_pred cccccCCCchhhhhhHhhhhhhhhhhhhhhhhhhcccccCccchhhccccccccchhhhhhhcccccccceecccchhhh
Confidence 468999999999999999999999999999999999888887754322 23344444433 445789999999999
Q ss_pred HHHHHHHHhhhhHHHHHhhccCCCchhh-hhhchh---------hHHHHHHHHhh------hcHHHHHHHHHHHHHHHHH
Q psy9205 75 FGGVNGILFTSARLFLTGSQEGHLPPLF-SYIHIK---------ICLMSVLMLVT------SDVFALINYMSVALWLSVG 138 (220)
Q Consensus 75 ~~~~~~~~~~~sR~l~~~a~dg~lP~~f-~~~~~~---------~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~~ 138 (220)
+++.++.+++.||++++|+|||.+|+++ ++.+|+ +.+++++.... ..++.+.+..++..++.|.
T Consensus 301 ~s~~~~~~~~~sR~l~ama~dg~lP~~~~~~~~k~~~P~~Ai~~~~~i~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~ 380 (478)
T PF00324_consen 301 FSSANASLYAASRLLYAMARDGLLPKKFFARHPKNGVPYVAILVSSIISLLVLLLGSFSPGIVFNWLLNISTISNLIVYI 380 (478)
T ss_pred hhhhhhhhcccceeehhhhhhhhhhhhhhhhhhcCCceEEEEeeehhchheeeeeccchhhHHHHHHhhhhhhhhhhHHH
Confidence 9999999999999999999999999544 444444 33333332221 2345677888999999999
Q ss_pred HHHHHHHhhhccC
Q psy9205 139 ACTAGLISLRFTQ 151 (220)
Q Consensus 139 ~~~~~~~~~r~~~ 151 (220)
+.+++.+++|++.
T Consensus 381 ~~~~s~~~~r~~~ 393 (478)
T PF00324_consen 381 LINISYIRFRKKF 393 (478)
T ss_pred hhhhhhhhhhhhh
Confidence 9999999888763
No 36
>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A ....
Probab=99.87 E-value=8.7e-21 Score=160.96 Aligned_cols=177 Identities=25% Similarity=0.429 Sum_probs=140.0
Q ss_pred ccccccccccChhHHHHHHHHHHHHHHHHHHHHHHhccChhhhccchh---HHHHHHHHhc-cchhHHHHHHHHHHHHHH
Q psy9205 2 SKEQGFQITLNLPRAIWIAMPIVTLVYVCANVAYFTVLTKEEMLTSPA---VAVTFGGKIY-KELVWIIPILVAMSTFGG 77 (220)
Q Consensus 2 ~a~E~k~p~~~~p~ai~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~-g~~~~~~~~~~~~~~~~~ 77 (220)
.+||.|| ||+|||+..+.+.+.++|.+.+++.....|+++...+++ +...+.+... ++...++.++.+++.+++
T Consensus 210 ~~~E~k~--k~ip~ai~~~~~~~~i~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 287 (426)
T PF13520_consen 210 LAEENKN--KTIPRAIIISIIIVAIIYILFSIALLGALPDDELANSSNSPSPFAVLASAVGGSWLAIIVSIAAILSLFGS 287 (426)
T ss_dssp GGGGSSS--HHHHHHHHHHHHHHHHHHHHHHHHHHTTSTHCHHHTTTCHHCHHHHHHHHHHCCTHHHHHHHHHHHHHHHH
T ss_pred ccccccc--hhheeecccchhHHHHHHhhhhheeeecccchhhhcccccccccchhhccccccccccccccccccccccc
Confidence 5899776 899999999999999999999999999999988766432 3555555555 445789999999999999
Q ss_pred HHHHHhhhhHHHHHhhccCCCchhhhhhchh---------hHHHHHHHH-h-----hhcHHHHHHHHHHHHHHHHHHHHH
Q psy9205 78 VNGILFTSARLFLTGSQEGHLPPLFSYIHIK---------ICLMSVLML-V-----TSDVFALINYMSVALWLSVGACTA 142 (220)
Q Consensus 78 ~~~~~~~~sR~l~~~a~dg~lP~~f~~~~~~---------~~~~~~~~~-~-----~~~~~~l~~~~~~~~~~~~~~~~~ 142 (220)
.++.+.+.+|++++|+|||.+|++|+|+||+ ..+++.+.. . .++++.+.+..++...+.|.+..+
T Consensus 288 ~~~~~~~~sR~l~~~a~d~~lP~~~~~~~k~~~P~~a~~~~~~i~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 367 (426)
T PF13520_consen 288 INAFIFGASRLLYAMARDGVLPKWFAKVNKFGTPYNAIILVAVISSILLLLFLFIPQSSFDILVSLSSVGYLISYILVIL 367 (426)
T ss_dssp HHHHHHHHHHHHHHHHHTTSSSGGGGTTSSSSSCHHHHHHHHHHHHHHHHHTTTSSSSHHHHHHHHHHHHTHHHHHHHHH
T ss_pred cchhhcchhhcccccccccchhhhhhhccccCCceeeehhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999955 333342222 1 136788999999999999999999
Q ss_pred HHHhhhccCCCCCC-CcccchHHHHHHHHHHHHHHHhhccc
Q psy9205 143 GLISLRFTQPDLHR-PIKVHLSLPIIFLACCIFLVVVPTIR 182 (220)
Q Consensus 143 ~~~~~r~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (220)
+.+++|+|+++.+| +++. ..++++.+.+++.......+
T Consensus 368 ~~~~~~~~~~~~~r~~~~~--~~~i~~~~~~~~~~~~~~~~ 406 (426)
T PF13520_consen 368 AVLFLRRKRPDLKRIPYRP--PVGIIGIIIILFVIIASFFP 406 (426)
T ss_dssp HHHHTHHHSCSSGH-HHHH--HHHHHHHHHHHHHHHHCCCH
T ss_pred HHHHHhhhcCCcCCCCcch--HHHHHHHHHHHHHHHHHHHh
Confidence 99999999888766 4332 45555556666665554443
No 37
>KOG2082|consensus
Probab=99.74 E-value=3.4e-17 Score=140.59 Aligned_cols=211 Identities=12% Similarity=0.096 Sum_probs=157.4
Q ss_pred ccccccccccChhHHHHHHHHHHHHHHHHHHHHHHhccChhhhcc--chhHHHHHHHHhccc-hhHHHHHHHHHHHHHHH
Q psy9205 2 SKEQGFQITLNLPRAIWIAMPIVTLVYVCANVAYFTVLTKEEMLT--SPAVAVTFGGKIYKE-LVWIIPILVAMSTFGGV 78 (220)
Q Consensus 2 ~a~E~k~p~~~~p~ai~~~~~~~~~~y~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~ 78 (220)
-|++.|||+|.+|.+.+.+.+.+..+|+...+.+.+......+.+ ++.+...+......| ..|++.++.++|.+|+.
T Consensus 432 rSGDLkDaQkSIPvGTI~AilTTS~vYlssv~lFGa~i~~~vLRDKfG~sv~g~lVva~laWPsPwVi~IGsFlST~GAg 511 (1075)
T KOG2082|consen 432 RSGDLKDAQKSIPVGTIAAILTTSFVYLSSVVLFGACIEGVVLRDKFGQSVGGNLVVATLAWPSPWVIVIGSFLSTCGAG 511 (1075)
T ss_pred CCccccchhhcCchhhhHHHHHHHHHHHHHHHHHHHhhcchhhhhhhhhhccCcEEEEEecCCCceeeehhHHHHHhHHH
Confidence 478999999999999999999999999988877766655222211 000110000011122 35899999999999999
Q ss_pred HHHHhhhhHHHHHhhccCCCc--hhhhhhchh---------hHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy9205 79 NGILFTSARLFLTGSQEGHLP--PLFSYIHIK---------ICLMSVLMLVTSDVFALINYMSVALWLSVGACTAGLISL 147 (220)
Q Consensus 79 ~~~~~~~sR~l~~~a~dg~lP--~~f~~~~~~---------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 147 (220)
+.++.+++|+|++.|||+.+| +.|+|.+++ +.+++-...+.++.+.+..+.+..+++.|.++++++.+.
T Consensus 512 LQsLtgAPRLLQAIAkD~IiPfL~~F~~~~~ngEPt~aLlLT~~Ice~gILigslD~iApilsmFFLMCY~fVNLaCavq 591 (1075)
T KOG2082|consen 512 LQSLTGAPRLLQAIAKDDIIPFLAPFGHGKANGEPTWALLLTAIICECGILIGSLDLIAPILSMFFLMCYLFVNLACAVQ 591 (1075)
T ss_pred HhhhcCcHHHHHHHhhcCccchhhhhccccCCCCccHHHHHHHHHHHhhheeechhHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 999999999999999999999 999887777 445555566778999999999999999999999887664
Q ss_pred h-ccCCCCCCCcccch-HHHHHHHHHHHHHHHhhcccCchHHHHHHHHHHHhhhhhhhehhhhccchhhhhhh
Q psy9205 148 R-FTQPDLHRPIKVHL-SLPIIFLACCIFLVVVPTIREPMNTVISLFIIASGVPVYYVCVKWKSKPALLLEMH 218 (220)
Q Consensus 148 r-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 218 (220)
. -|.|++++.||... .++.+|..+|+++++.+ .+.++++.+.+..++|-+..++-.+++|+|.++
T Consensus 592 tLLrtPnWRPRfkyyHW~LSflG~sLC~~iMF~~------SWyyAlvAm~~a~~IYKYiEykGAeKEWGDGiR 658 (1075)
T KOG2082|consen 592 TLLRTPNWRPRFKYYHWSLSFLGASLCLAIMFIS------SWYYALVAMLIAGVIYKYIEYKGAEKEWGDGIR 658 (1075)
T ss_pred HHhcCCCCCccchhhhhHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHhhccccchhccchh
Confidence 3 45577655566544 68899999999988753 334455555666667776667777788887653
No 38
>KOG1288|consensus
Probab=99.52 E-value=6.8e-13 Score=113.73 Aligned_cols=171 Identities=13% Similarity=0.119 Sum_probs=130.6
Q ss_pred ccccccccccChhHHHHHHHHHHHHHHHHHHHHHHhccChhhhccchhHHHHHHHHhccchhHHHHHHHHHHHHHHHHHH
Q psy9205 2 SKEQGFQITLNLPRAIWIAMPIVTLVYVCANVAYFTVLTKEEMLTSPAVAVTFGGKIYKELVWIIPILVAMSTFGGVNGI 81 (220)
Q Consensus 2 ~a~E~k~p~~~~p~ai~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 81 (220)
.++|.|+|.|.+||+.+.++..+.+.|+++.+.+....|...+.++..+... .....+++.+++.-+.+.+.+..
T Consensus 316 MSgELk~PSkSIP~GTl~ava~Tf~~Yvl~~flm~~t~~r~~Lq~dy~v~~~-----isl~p~fi~iGi~sttlfss~s~ 390 (945)
T KOG1288|consen 316 MSGELKAPSKSIPKGTLSAVAFTFFVYVLVIFLMGCTVPRTLLQNDYDVMMH-----ISLHPPFILIGILSTTLFSSMSG 390 (945)
T ss_pred cCccccCccccCCccchHHHHHHHHHHHHHHHHhccCcchHHhhhchhheee-----ccccchHHHHHHHHHHHHHHHHH
Confidence 5899999999999999999999999999999998888887666554332221 12245677788888888888999
Q ss_pred HhhhhHHHHHhhccCCCc--hhhhhhchh----------hHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy9205 82 LFTSARLFLTGSQEGHLP--PLFSYIHIK----------ICLMSVLMLVTSDVFALINYMSVALWLSVGACTAGLISLRF 149 (220)
Q Consensus 82 ~~~~sR~l~~~a~dg~lP--~~f~~~~~~----------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~r~ 149 (220)
+.++||++.++|||+.+| -.|+|...+ ++.+.-+.++.++++.+.++.+..++++|..++++++.++.
T Consensus 391 liGasrvL~alakD~lfg~ll~fak~~s~~~nP~~av~vtw~lvqlvll~g~~N~iA~~it~~FLlty~~vNLacl~Lei 470 (945)
T KOG1288|consen 391 LIGASRVLEALAKDDLFGGLLFFAKGSSYDGNPYVAVGVTWLLVQLVLLWGDINKIASMITMTFLLTYGAVNLACLLLEI 470 (945)
T ss_pred HhhHHHHHHHHhhcccchhhheeeeccccCCCceeeeeHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 999999999999999999 555665333 44555556677899999999999999999999999999886
Q ss_pred c-CCCCCCCcccch-HHHHHHHHHHHHHHH
Q psy9205 150 T-QPDLHRPIKVHL-SLPIIFLACCIFLVV 177 (220)
Q Consensus 150 ~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 177 (220)
. .|+.++.||.-- --..+|.+.+..++.
T Consensus 471 ssAPNFRPtFkyF~w~TclvG~l~s~~mMf 500 (945)
T KOG1288|consen 471 SSAPNFRPTFKYFNWHTCLVGVLLSLGMMF 500 (945)
T ss_pred ccCCCCCchhhhhhHHHHHHHHHHHHhhhh
Confidence 4 355444455432 345556666665553
No 39
>TIGR00796 livcs branched-chain amino acid uptake carrier. transmembrane helical spanners.
Probab=99.17 E-value=2.4e-09 Score=89.06 Aligned_cols=153 Identities=9% Similarity=0.149 Sum_probs=113.3
Q ss_pred ccccccccChhHHHHHHH-HHHHHHHHHHHHHHHhccChhhhcc---chhHHHHHHHHhccchh-HHHHHHHHHHHHHHH
Q psy9205 4 EQGFQITLNLPRAIWIAM-PIVTLVYVCANVAYFTVLTKEEMLT---SPAVAVTFGGKIYKELV-WIIPILVAMSTFGGV 78 (220)
Q Consensus 4 ~E~k~p~~~~p~ai~~~~-~~~~~~y~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~ 78 (220)
.|.|||+|+.|+.+..++ ....+.|+....++.+..+.+++.+ +..+.....+..+|..+ .++.+.++++++++.
T Consensus 206 ~g~~~~~~~~~~~i~~G~ia~i~l~~vY~~L~~lGa~~~~~~~~~~~~~~~l~~~a~~~~G~~G~~ll~i~v~lACLtT~ 285 (378)
T TIGR00796 206 RGVTKPKKITKYTIKAGLIAAVLLAFIYLSLFYLGATSAAAAGDAVNGAQILSAYSQHLFGSLGSFLLGLIITLACLTTA 285 (378)
T ss_pred hCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHhhhcccCCcHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHH
Confidence 499999999999999999 6666778888888888887665543 45677778888999875 899999999999999
Q ss_pred HHHHhhhhHHHHHhhccCCCchhhhhhchh----hHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHh--hhccCC
Q psy9205 79 NGILFTSARLFLTGSQEGHLPPLFSYIHIK----ICLMSVLMLVTSDVFALINYMSVALWLSVGACTAGLIS--LRFTQP 152 (220)
Q Consensus 79 ~~~~~~~sR~l~~~a~dg~lP~~f~~~~~~----~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~--~r~~~~ 152 (220)
++...+.++.....- || ++-+ ...+.........++.+.+++.-...+.|=+.....+. +||+.|
T Consensus 286 iGli~~~a~~f~~~~-----~k----~~y~~~v~~~~l~s~~ia~~Gl~~Ii~~~~PvL~~~YP~~i~lill~ll~~~~~ 356 (378)
T TIGR00796 286 VGLTTACSEYFHKLV-----PK----LSYKTWVIVFTLFSFIVANLGLTQIISISIPVLMIIYPLAIVLILLSFLRKLWD 356 (378)
T ss_pred HHHHHHHHHHHHHhc-----CC----CCHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999777544431 11 1112 22222233344578999999888888888877666555 788778
Q ss_pred CCCCCcccchHHH
Q psy9205 153 DLHRPIKVHLSLP 165 (220)
Q Consensus 153 ~~~~~~~~~~~~~ 165 (220)
+.+|+||.+....
T Consensus 357 ~~~~~y~~~~~~~ 369 (378)
T TIGR00796 357 SKRAVYQITLIVA 369 (378)
T ss_pred CCCCeeehHHHHH
Confidence 8789999876433
No 40
>TIGR00837 araaP aromatic amino acid transport protein. aromatic amino acid transporters and includes the tyrosine permease, TyrP, of E. coli, and the tryptophan transporters TnaB and Mtr of E. coli.
Probab=99.06 E-value=6.2e-09 Score=87.37 Aligned_cols=88 Identities=13% Similarity=0.098 Sum_probs=67.3
Q ss_pred cccccccccChhHHHHHHHHHHHHHHHHHHHHHHhccChhhhccch------hHHHHHHHHhcc-c-hhHHHHHHHHHHH
Q psy9205 3 KEQGFQITLNLPRAIWIAMPIVTLVYVCANVAYFTVLTKEEMLTSP------AVAVTFGGKIYK-E-LVWIIPILVAMST 74 (220)
Q Consensus 3 a~E~k~p~~~~p~ai~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~g-~-~~~~~~~~~~~~~ 74 (220)
.+|.++++|++||++..+..++.++|++...+..+..|.+++.+.. .......+...+ + ...++.+...++.
T Consensus 201 ~~~~~~~~k~i~raii~g~~i~~~lY~l~~~~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~al 280 (381)
T TIGR00837 201 YKYYDGNVKKVKKSILIGSAIALVLYILWQLATMGNLPRSEFLPIIAKGGNLDGLVNALQGVLKSSAIELALELFSNFAL 280 (381)
T ss_pred HHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHcCCChHHHHHHHHHhccchHHHHHHHHHHHHHH
Confidence 5778777999999999999999999999999999999999876311 111222223222 2 4678888899999
Q ss_pred HHHHHHHHhhhhHHHH
Q psy9205 75 FGGVNGILFTSARLFL 90 (220)
Q Consensus 75 ~~~~~~~~~~~sR~l~ 90 (220)
.++.++...+.++.+.
T Consensus 281 ~tS~~g~~l~~~d~l~ 296 (381)
T TIGR00837 281 ASSFLGVTLGLFDYLA 296 (381)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999998888886554
No 41
>KOG2083|consensus
Probab=98.76 E-value=8.9e-08 Score=81.85 Aligned_cols=210 Identities=10% Similarity=0.082 Sum_probs=136.0
Q ss_pred CccccccccccChhHHHHHHHHHHHHHHHHHHHHHHhccChhhhccch---------hHHHHHH-HHhccchhHHHHHHH
Q psy9205 1 MSKEQGFQITLNLPRAIWIAMPIVTLVYVCANVAYFTVLTKEEMLTSP---------AVAVTFG-GKIYKELVWIIPILV 70 (220)
Q Consensus 1 ~~a~E~k~p~~~~p~ai~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~---------~~~~~~~-~~~~g~~~~~~~~~~ 70 (220)
+.+++.|+|++++|++-..+......+|.....-.....-.+.+.+.. ....... -+.....+..+..+.
T Consensus 244 nisGdL~~Pq~~IP~GaL~Ai~vst~~yl~~i~~~Ga~~~r~~~~~~~~~~~~~c~~gl~~~~qv~smvS~~~Pl~~AGi 323 (643)
T KOG2083|consen 244 NISGDLKDPQKAIPLGALLAIGVSTLLYLIFIADLGATPVRDALENWNDTSTKSCPIGLTNYLQVMSMVSTFGPLITAGI 323 (643)
T ss_pred cccCCCCCchhhcccchhhhhhhhhhhhhhhhhhcccHHHHHHhccchhhccCCCccchHHHHHHHHhHhhcccchhhHH
Confidence 357889999999999999999999999987655443332222222110 1111111 011222345677788
Q ss_pred HHHHHHHHHHHHhhhhHHHHHhhccCCCc--hhhhhhchh----------hHHHHHHHHhhhcHHHHHHHHHHHHHHHHH
Q psy9205 71 AMSTFGGVNGILFTSARLFLTGSQEGHLP--PLFSYIHIK----------ICLMSVLMLVTSDVFALINYMSVALWLSVG 138 (220)
Q Consensus 71 ~~~~~~~~~~~~~~~sR~l~~~a~dg~lP--~~f~~~~~~----------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 138 (220)
..+.+++..+.+.++.++++++++|+.-| .+|.|..++ +...+......+..+.+..+.+.....+|.
T Consensus 324 ~~a~LSsalsslVsap~V~QaL~kd~~yp~i~~f~KgyGkn~~Plrg~~l~~~~av~fi~igeln~iapiis~FfL~syA 403 (643)
T KOG2083|consen 324 LAAELSSALSSLVSAPKVLQALCKDSLYPSILFFAKGYGKNKEPLRGYLLTFLTAVSFIAIGELNIIAPIISNFFLLSYA 403 (643)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHhcCCCccHHHHHccCCccccchHHHHHHHHhHheeEEecccceeccchhhhhhhhhh
Confidence 88889989999999999999999999999 566655544 222333333446677788888899999999
Q ss_pred HHHHHHHhhhccCCCCCCC-cccch-HHHHHHHHHHHHHHHhhcccCchHHHHHHHHHHHhhhhhhhehhhhccchhhhh
Q psy9205 139 ACTAGLISLRFTQPDLHRP-IKVHL-SLPIIFLACCIFLVVVPTIREPMNTVISLFIIASGVPVYYVCVKWKSKPALLLE 216 (220)
Q Consensus 139 ~~~~~~~~~r~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 216 (220)
....+++..+...++..|| ++... |++.++.+.++..+.. ..++..+.-......+|++..+++..-.|+.+
T Consensus 404 linf~~f~aSl~~s~~wRp~f~~yn~wVSllGalKOG~ImFl------i~w~aaLi~~~~~~~Ly~yv~~~~pdvnwGsS 477 (643)
T KOG2083|consen 404 LINFSCFHASLAISEGWRPSFKFYNAWVSLLGALLCLAIMFL------ISWWAALITFSVLSALYLYVGRRKPDVNWGSS 477 (643)
T ss_pred ccchhhhhhhhccccccCchhhhHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHhhhhhcCCCCCcCch
Confidence 9988988777655544443 44443 8888888888877752 12333333333333356655555555455443
No 42
>PHA02764 hypothetical protein; Provisional
Probab=97.69 E-value=0.00027 Score=56.80 Aligned_cols=39 Identities=26% Similarity=0.155 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHhhccCCCchhhhhhchh
Q psy9205 70 VAMSTFGGVNGILFTSARLFLTGSQEGHLPPLFSYIHIK 108 (220)
Q Consensus 70 ~~~~~~~~~~~~~~~~sR~l~~~a~dg~lP~~f~~~~~~ 108 (220)
+....++-+....-.+||+.++|+-|+.+|++|+|.||+
T Consensus 244 ~~~w~~~y~~~~~~~~srli~~~~fd~~lpe~f~k~~~n 282 (399)
T PHA02764 244 MPIWFFSYMPIANKIQSRLIQTMSFDKVLPEKFSKINPN 282 (399)
T ss_pred HHHHHHhheeeecchHHHHHHHHHhhhhchHHHhccCCC
Confidence 344455666666678999999999999999999999999
No 43
>TIGR00912 2A0309 spore germination protein (amino acid permease). This model describes spore germination protein GerKB and paralogs from Bacillus subtilis, Clostridium tetani, and other known or predicted endospore-forming members of the Firmicutes (low-GC Gram positive bacteria). Members show some similarity to amino acid permeases.
Probab=97.34 E-value=0.0079 Score=50.13 Aligned_cols=87 Identities=10% Similarity=0.031 Sum_probs=62.5
Q ss_pred cccccccccChhHHHHHHHHHHHHHHHHHHHHHHhccChhhhccchhHHHHHHH-Hhccc----hhHHHHHHHHHHHHHH
Q psy9205 3 KEQGFQITLNLPRAIWIAMPIVTLVYVCANVAYFTVLTKEEMLTSPAVAVTFGG-KIYKE----LVWIIPILVAMSTFGG 77 (220)
Q Consensus 3 a~E~k~p~~~~p~ai~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~----~~~~~~~~~~~~~~~~ 77 (220)
.+|.|||| +.||++..+...++++|.+...+..+..|+++..+...|.....+ ...+. ...++...-+.+.+..
T Consensus 202 ~~~~~~~~-~~~k~~~~~~~~~~~ly~~~~~~~i~~lg~~~~~~~~~P~~~~~~~i~~~~f~eR~e~~~~~~w~~~~f~~ 280 (359)
T TIGR00912 202 FPLLSKKK-KIKKSIIKAIIIGVLLYILTTFVSISVFGGNVTKNLYWPTLELIKLINIGDFIERFELIVMTFWVFIIFVK 280 (359)
T ss_pred HHHhCChh-hhHHHHHHHHHHHHHHHHHHHHHHHheecHHHhhhhcccHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHH
Confidence 57888865 689999999999999999999999999999998776544444444 22332 2234444455666777
Q ss_pred HHHHHhhhhHHHH
Q psy9205 78 VNGILFTSARLFL 90 (220)
Q Consensus 78 ~~~~~~~~sR~l~ 90 (220)
....++..++.+.
T Consensus 281 ~~~~~~~~~~~~~ 293 (359)
T TIGR00912 281 IAFYLYIAVKGLS 293 (359)
T ss_pred HHHHHHHHHHHHH
Confidence 7777777777643
No 44
>PF13906 AA_permease_C: C-terminus of AA_permease
Probab=97.16 E-value=0.0013 Score=38.37 Aligned_cols=49 Identities=22% Similarity=0.266 Sum_probs=38.9
Q ss_pred cccch--HHHHHHHHHHHHHHHhhcccCchHHHHHHHHHHHhhhhhhhehhhhc
Q psy9205 158 IKVHL--SLPIIFLACCIFLVVVPTIREPMNTVISLFIIASGVPVYYVCVKWKS 209 (220)
Q Consensus 158 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 209 (220)
||.|. ++|.+++..+++++. .-+..+.....+|+++|.++|+.|.++|+
T Consensus 1 F~vP~vP~~P~~si~~ni~Lm~---~L~~~twirf~iWl~iGl~iYf~YG~~hS 51 (51)
T PF13906_consen 1 FKVPLVPFLPALSILINIYLMA---QLSALTWIRFGIWLAIGLVIYFGYGIRHS 51 (51)
T ss_pred CCCCcccHHHHHHHHHHHHHHH---HhhHhHHHHHHHHHHHHHHHHHheeeecC
Confidence 46666 899999999999996 23445666777889999999999887763
No 45
>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. Aromatic amino acids are concentrated in the cytoplasm of Escherichia coli by 4 distinct transport systems: a general aromatic amino acid permease, and a specific permease for each of the 3 types (Phe, Tyr and Trp) []. It has been shown [] that some permeases in E. coli and related bacteria are evolutionary related. These permeases are proteins of about 400 to 420 amino acids and are located in the cytoplasmic membrane and, like bacterial sugar/cation transporters, are thought to contain 12 transmembrane (TM) regions [] - hydropathy analysis, however, is inconclusive, suggesting the possibility of 10 to 12 membrane-spanning domains []. The best conserved domain is a stretch of 20 residues which seems to be located in a cytoplasmic loop between the first and second transmembrane region.
Probab=97.00 E-value=0.088 Score=44.61 Aligned_cols=149 Identities=12% Similarity=0.112 Sum_probs=80.8
Q ss_pred ccccccChhHHHHHHHHHHHHHHHHHHHHHHhccChhhhcc----c---hhHHHHHHHHhccc-hhHHHHHHHHHHHHHH
Q psy9205 6 GFQITLNLPRAIWIAMPIVTLVYVCANVAYFTVLTKEEMLT----S---PAVAVTFGGKIYKE-LVWIIPILVAMSTFGG 77 (220)
Q Consensus 6 ~k~p~~~~p~ai~~~~~~~~~~y~~~~~~~~~~~~~~~~~~----~---~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~ 77 (220)
.++-+|++.|++..+..+..++|++-..+..+.+|.++..+ + ++......+...++ ...+..+...++..++
T Consensus 210 ~~~d~~k~~~ai~~Gs~i~lv~yl~w~~~~lg~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~i~~~~~~fa~~Ai~TS 289 (394)
T PF03222_consen 210 LGGDPKKIRKAIIIGSLIPLVMYLLWVFSILGSLPREQFAEAIAQGGNVSALVSALANVSGSPWISILGSIFAFFAIATS 289 (394)
T ss_pred hCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhcCCChHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHH
Confidence 34446788999999999999999998888888888876533 1 12222222222223 3455666666666666
Q ss_pred HHHHHhhhhHHHHHhhccCCCchhhhhhchh--hHHHHHHHH------hhhcHHHHHHHHHHHHHHHHHHHH-HHHHhhh
Q psy9205 78 VNGILFTSARLFLTGSQEGHLPPLFSYIHIK--ICLMSVLML------VTSDVFALINYMSVALWLSVGACT-AGLISLR 148 (220)
Q Consensus 78 ~~~~~~~~sR~l~~~a~dg~lP~~f~~~~~~--~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~r 148 (220)
..+...+....+...=+. + .+.++| ...++.+.. ..+.+....+.++....+-+.+.+ ....+.|
T Consensus 290 FlGv~lgl~d~l~d~~k~---~---~~~~~r~~~~~ltf~ppl~~a~~~p~~F~~al~~aG~~~~il~~ilP~~m~~~~r 363 (394)
T PF03222_consen 290 FLGVYLGLFDFLADLFKL---K---NNSSGRLKTWLLTFLPPLIFALLFPNGFLIALGYAGIGIAILLGILPALMVWKAR 363 (394)
T ss_pred HHHHHHHHHHHHHHHHcC---C---ccccchHHHHHHHHHhHHHHHHHCcHHHHHHHHhhcHHHHHHHHHHHHHHHHHHH
Confidence 666666655544322111 0 111122 222222211 123455566666655544444444 3344555
Q ss_pred ccCCCCCCCcccch
Q psy9205 149 FTQPDLHRPIKVHL 162 (220)
Q Consensus 149 ~~~~~~~~~~~~~~ 162 (220)
+++++ ++|+.+.
T Consensus 364 ~~~~~--~~~~~~g 375 (394)
T PF03222_consen 364 KRKPK--QPYRVPG 375 (394)
T ss_pred cccCC--CCeEEeC
Confidence 54433 4577765
No 46
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)). They function by a Na+ or H+ symport mechanism and display 12 putative transmembrane helical spanners.; GO: 0015658 branched-chain aliphatic amino acid transmembrane transporter activity, 0015803 branched-chain aliphatic amino acid transport, 0016021 integral to membrane
Probab=96.53 E-value=0.22 Score=42.56 Aligned_cols=121 Identities=12% Similarity=0.119 Sum_probs=70.5
Q ss_pred ccChhHHHHHHHHHHHHHHHHHHHHHHhccCh-hhhccchhHHHHHHHHhccchh-HHHHHHHHHHHHHHHHHHHhhhhH
Q psy9205 10 TLNLPRAIWIAMPIVTLVYVCANVAYFTVLTK-EEMLTSPAVAVTFGGKIYKELV-WIIPILVAMSTFGGVNGILFTSAR 87 (220)
Q Consensus 10 ~~~~p~ai~~~~~~~~~~y~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~sR 87 (220)
.|..-++-.++.....++|....+.-....+. ++..+.........++.+|..+ .++.+.+.++|+++..+...+++.
T Consensus 221 ~~~~~~ag~ia~~lL~~IY~gL~~lGa~~~~~~~~~~~g~~lL~~i~~~~~G~~G~~ll~iiv~lACLTTaIGL~~a~a~ 300 (427)
T PF05525_consen 221 KKYTIKAGLIAGILLALIYGGLAYLGATSSGSFPDDINGAELLSQIANHLFGSAGQILLGIIVFLACLTTAIGLISACAE 300 (427)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHccCCcccccCCCCHHHHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555566666655433222221 2223334566667788899876 888999999999999999999998
Q ss_pred HHHHhhccCCCchhhhhhchh--hHHHHHHHHhh--hcHHHHHHHHHHHHHHHHHH
Q psy9205 88 LFLTGSQEGHLPPLFSYIHIK--ICLMSVLMLVT--SDVFALINYMSVALWLSVGA 139 (220)
Q Consensus 88 ~l~~~a~dg~lP~~f~~~~~~--~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~~~ 139 (220)
...+... |++-| ..+.++..... -.++.+++++.=...+.|=.
T Consensus 301 yf~~~~~---------kisY~~~v~i~~i~S~~ian~Gl~~Ii~~s~PiL~~iYP~ 347 (427)
T PF05525_consen 301 YFSELFP---------KISYKVWVIIFTIFSFIIANLGLDQIIKISVPILMFIYPV 347 (427)
T ss_pred HHHHHhc---------ccChHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHhHH
Confidence 7665442 12222 22222222221 24677777666555555543
No 47
>PRK10483 tryptophan permease; Provisional
Probab=96.26 E-value=0.63 Score=39.71 Aligned_cols=84 Identities=7% Similarity=0.120 Sum_probs=52.9
Q ss_pred ccccChhHHHHHHHHHHHHHHHHHHHHHHhccChhhhcc----chhH---HHHHHHHhcc-chhHHHHHHHHHHHHHHHH
Q psy9205 8 QITLNLPRAIWIAMPIVTLVYVCANVAYFTVLTKEEMLT----SPAV---AVTFGGKIYK-ELVWIIPILVAMSTFGGVN 79 (220)
Q Consensus 8 ~p~~~~p~ai~~~~~~~~~~y~~~~~~~~~~~~~~~~~~----~~~~---~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~ 79 (220)
|+ |.+.|++..+..+..++|++-..+..+.+|++++.+ ++.. ...+.+.... ....+..+...++..++-.
T Consensus 221 d~-~kir~~I~iGs~Iplv~yl~W~~~~lg~l~~~~~~~~~~~~~ni~~L~~~l~~~~~~~~i~~~~~~Fa~~Ai~TSFl 299 (414)
T PRK10483 221 DP-KTIVKCLVYGTLMALALYTIWLLATMGNIPRPEFIGIAEKGGNIDVLVQALSGVLNSRSLDLLLVVFSNFAVASSFL 299 (414)
T ss_pred CH-HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCChHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHH
Confidence 44 488999999999999999999999999999877532 2222 1222222222 2345555665666666666
Q ss_pred HHHhhhhHHHHHh
Q psy9205 80 GILFTSARLFLTG 92 (220)
Q Consensus 80 ~~~~~~sR~l~~~ 92 (220)
+...+...-+..+
T Consensus 300 Gv~LGL~d~l~D~ 312 (414)
T PRK10483 300 GVTLGLFDYLADL 312 (414)
T ss_pred HHHHHHHHHHHHH
Confidence 5555555544443
No 48
>PRK15132 tyrosine transporter TyrP; Provisional
Probab=96.13 E-value=0.73 Score=39.22 Aligned_cols=87 Identities=7% Similarity=0.044 Sum_probs=57.9
Q ss_pred cccccChhHHHHHHHHHHHHHHHHHHHHHHhccChhhhcc----ch---hHHHHHHHHhc-cchhHHHHHHHHHHHHHHH
Q psy9205 7 FQITLNLPRAIWIAMPIVTLVYVCANVAYFTVLTKEEMLT----SP---AVAVTFGGKIY-KELVWIIPILVAMSTFGGV 78 (220)
Q Consensus 7 k~p~~~~p~ai~~~~~~~~~~y~~~~~~~~~~~~~~~~~~----~~---~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~ 78 (220)
++-+|.+.|++..+..+..+.|++-..+..+..|.+++.+ .. +..+.+.+... ++...+..+...++..++-
T Consensus 208 ~~~~~~~~k~i~~Gs~i~li~yl~W~~~~lg~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~fa~~Ai~TSF 287 (403)
T PRK15132 208 GGNIRKLRWVFIIGSAIPLVAYIFWQLATLGSIDSTTFMGLLANHAGLNGLLQALREVVASPHVELAVHLFADLALATSF 287 (403)
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHccCchHHHHHHHHHHccChHHHHHHHHHHHHHHHHHH
Confidence 4445788999999999999999999999999999887532 11 23333333222 2334566666666666666
Q ss_pred HHHHhhhhHHHHHhh
Q psy9205 79 NGILFTSARLFLTGS 93 (220)
Q Consensus 79 ~~~~~~~sR~l~~~a 93 (220)
.+...+...-+..+-
T Consensus 288 lGv~lgl~d~l~d~~ 302 (403)
T PRK15132 288 LGVALGLFDYLADLF 302 (403)
T ss_pred HHHHHHHHHHHHHHH
Confidence 666666666655544
No 49
>COG3949 Uncharacterized membrane protein [Function unknown]
Probab=96.01 E-value=0.3 Score=39.93 Aligned_cols=83 Identities=7% Similarity=0.080 Sum_probs=57.1
Q ss_pred ccccccccccChhHHHHHHHHHHHHHHHHHHHHHHhccChhhhccchhHHHHHHHHhccchhHHHHHHHHHHHHHHHHHH
Q psy9205 2 SKEQGFQITLNLPRAIWIAMPIVTLVYVCANVAYFTVLTKEEMLTSPAVAVTFGGKIYKELVWIIPILVAMSTFGGVNGI 81 (220)
Q Consensus 2 ~a~E~k~p~~~~p~ai~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 81 (220)
.++|+++ +|+.-+|-..+-++.+.+..+.+.......| +..+.+-|...+.++..+..+.++.+...+...++..+.
T Consensus 201 lg~~~~~-~~~~~~g~l~gglIlgvl~~l~nlsLi~~~~--~v~~~dIP~l~i~~~~~~~i~lvm~vIi~~~IytT~vg~ 277 (349)
T COG3949 201 LGGRMES-RKVSGIGGLIGGLILGVLLFLINLSLIALYD--KVVNYDIPLLTIAKNFSPLIGLVMSVIIWLEIYTTTVGL 277 (349)
T ss_pred hcccccc-cchhhhhhhhhhHHHHHHHHHHHHHHHhhcc--hhhccCCcHHHHHHhccHHHHHHHHHHHHHHHHHHHHHH
Confidence 4688888 5677788888888888877777777766544 555655444445554444456777777777888888887
Q ss_pred HhhhhH
Q psy9205 82 LFTSAR 87 (220)
Q Consensus 82 ~~~~sR 87 (220)
+++-++
T Consensus 278 iy~l~~ 283 (349)
T COG3949 278 IYGLAS 283 (349)
T ss_pred HHHHHH
Confidence 777444
No 50
>PRK09664 tryptophan permease TnaB; Provisional
Probab=95.89 E-value=0.66 Score=39.58 Aligned_cols=81 Identities=9% Similarity=0.133 Sum_probs=48.6
Q ss_pred ccChhHHHHHHHHHHHHHHHHHHHHHHhccChhhhcc----chhHH---HHHHHHhcc-chhHHHHHHHHHHHHHHHHHH
Q psy9205 10 TLNLPRAIWIAMPIVTLVYVCANVAYFTVLTKEEMLT----SPAVA---VTFGGKIYK-ELVWIIPILVAMSTFGGVNGI 81 (220)
Q Consensus 10 ~~~~p~ai~~~~~~~~~~y~~~~~~~~~~~~~~~~~~----~~~~~---~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~ 81 (220)
.|...|++..+..+..++|++-..+..+.+|++++.+ +++.. ....+...+ +...+..+...++..++-.+.
T Consensus 223 ~~~~~kaIl~Gs~IpLviY~~W~~~ilG~lp~~~~~~~~~~g~nv~~l~~s~~~~~~~~~i~~~~~~Fa~~Ai~TSFlGv 302 (415)
T PRK09664 223 KDKLIKSVVFGSLLALVIYLFWLYCTMGNIPRESFKAIISSGGNVDSLVKSFLGTKQHGIIEFCLLVFSNLAVASSFFGV 302 (415)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCCchHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHH
Confidence 4678899999999999999999999989888777532 11222 222222222 234455555555555555554
Q ss_pred HhhhhHHHH
Q psy9205 82 LFTSARLFL 90 (220)
Q Consensus 82 ~~~~sR~l~ 90 (220)
..+...-+.
T Consensus 303 ~LGL~D~l~ 311 (415)
T PRK09664 303 TLGLFDYLA 311 (415)
T ss_pred HHHHHHHHH
Confidence 444444333
No 51
>KOG1304|consensus
Probab=95.32 E-value=0.56 Score=40.19 Aligned_cols=39 Identities=18% Similarity=0.282 Sum_probs=29.9
Q ss_pred ccccccccChh---HHHHHHHHHHHHHHHHHHHHHHhccChhh
Q psy9205 4 EQGFQITLNLP---RAIWIAMPIVTLVYVCANVAYFTVLTKEE 43 (220)
Q Consensus 4 ~E~k~p~~~~p---~ai~~~~~~~~~~y~~~~~~~~~~~~~~~ 43 (220)
+|+|+|+ ++| ..+-.++.++.++|......-+...+++.
T Consensus 265 n~Mk~P~-~F~g~~gVLn~~M~~V~~ly~~~Gf~GYl~fG~~v 306 (449)
T KOG1304|consen 265 NSMKKPQ-KFPGPFGVLNLGMGIVTLLYIFLGFFGYLAFGDDV 306 (449)
T ss_pred hcccChh-hcCCccchHHHHHHHHHHHHHHHHHHHHhhccccc
Confidence 5789988 456 88889999999999987776666555443
No 52
>PRK11375 allantoin permease; Provisional
Probab=95.31 E-value=1.3 Score=38.69 Aligned_cols=32 Identities=13% Similarity=0.242 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHH-HHHhhhhHHHHHhhccCCCchhhh
Q psy9205 67 PILVAMSTFGGVN-GILFTSARLFLTGSQEGHLPPLFS 103 (220)
Q Consensus 67 ~~~~~~~~~~~~~-~~~~~~sR~l~~~a~dg~lP~~f~ 103 (220)
.+..+++..++.. ...++++- .-.+.+||+..
T Consensus 314 ~l~~v~a~~~tN~~~N~ys~~~-----~l~~l~pk~i~ 346 (484)
T PRK11375 314 VLVILMTTISTNATGNIIPAGY-----QIAALAPTKLT 346 (484)
T ss_pred HHHHHHHHHHHHHHhhcccHHH-----HHHHhCcCccc
Confidence 3444555555533 34554443 33566776543
No 53
>PF02705 K_trans: K+ potassium transporter; InterPro: IPR003855 This is a family of K+ potassium transporters that are conserved across phyla, having both bacterial (KUP) [], yeast (HAK) [], and plant (AtKT) [] sequences as members.; GO: 0015079 potassium ion transmembrane transporter activity, 0071805 potassium ion transmembrane transport, 0016020 membrane
Probab=95.06 E-value=1.6 Score=38.38 Aligned_cols=97 Identities=20% Similarity=0.150 Sum_probs=53.9
Q ss_pred HHHHHhccchhHHHHHHHHHHHHHHHHHHHhhhhHHHHHhhccCCCch-hhhhhchh------------hHHHHHHH--H
Q psy9205 53 TFGGKIYKELVWIIPILVAMSTFGGVNGILFTSARLFLTGSQEGHLPP-LFSYIHIK------------ICLMSVLM--L 117 (220)
Q Consensus 53 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~dg~lP~-~f~~~~~~------------~~~~~~~~--~ 117 (220)
.+......+..+.+.+.+.++..-+-.+.+.++=-+..+.-+-|.+|+ ...+++++ ...++++. .
T Consensus 265 pFf~~~P~~~~~p~~ilAtlAtIIASQA~Isg~FSl~~Qai~Lg~~Pr~~I~hTS~~~~GQIYIP~vNw~L~i~~i~vvl 344 (534)
T PF02705_consen 265 PFFLLIPEWLLWPMVILATLATIIASQAVISGAFSLTRQAIQLGYFPRLKIVHTSEKEEGQIYIPEVNWLLMIGVIAVVL 344 (534)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEECCcccCCcEechHHHHHHHHHHHhhhe
Confidence 344433334444444444444444444555555566667778899994 23344444 12222222 2
Q ss_pred hhhcHHHHHHHHHHHHHHHHHHHHHHH-Hhhhc
Q psy9205 118 VTSDVFALINYMSVALWLSVGACTAGL-ISLRF 149 (220)
Q Consensus 118 ~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~r~ 149 (220)
.+.+-+.+.+.-+++......++.+-. ++.++
T Consensus 345 ~F~~S~~la~AYGiAVt~tM~iTT~L~~~v~~~ 377 (534)
T PF02705_consen 345 GFRSSSNLAAAYGIAVTGTMLITTILLFLVMRR 377 (534)
T ss_pred EECChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346777888888888888877775543 33443
No 54
>PRK13629 threonine/serine transporter TdcC; Provisional
Probab=94.94 E-value=2.1 Score=36.89 Aligned_cols=85 Identities=12% Similarity=0.076 Sum_probs=53.1
Q ss_pred cccChhHHHHHHHHHHHHHHHHHHHHHHhccChhhhcc----chhHHHHHHHHhcc----------chhHHHHHHHHHHH
Q psy9205 9 ITLNLPRAIWIAMPIVTLVYVCANVAYFTVLTKEEMLT----SPAVAVTFGGKIYK----------ELVWIIPILVAMST 74 (220)
Q Consensus 9 p~~~~p~ai~~~~~~~~~~y~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~g----------~~~~~~~~~~~~~~ 74 (220)
.+|...|++..+..+..++|++-.+++.+..|+|++.+ +.+....+.+...+ ....+..+...++.
T Consensus 248 a~~k~~rii~~gs~i~lv~y~fwv~S~~gsLs~~~l~~a~~qn~s~Ls~La~~~~~~~~~~~~~~~~i~~~~~ifa~~AI 327 (443)
T PRK13629 248 TERKCSQIISRASMLMVAVVMFFAFSCLFTLSPQNMAEAKAQNIPVLSYLANHFASMTGTKSTFAITLEYAASIIALVAI 327 (443)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhCCcHHHHHHHHhhhcccccccchhHHHHHHHHHHHHHH
Confidence 46788899999999999999999999999999988653 22323333332222 23344444444444
Q ss_pred HHHHHHHHhhhhHHHHHhh
Q psy9205 75 FGGVNGILFTSARLFLTGS 93 (220)
Q Consensus 75 ~~~~~~~~~~~sR~l~~~a 93 (220)
.++-.+...+.---+..+.
T Consensus 328 ~TSFlGv~LGl~E~l~gl~ 346 (443)
T PRK13629 328 FKSFFGHYLGTLEGLNGLI 346 (443)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444
No 55
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism]
Probab=94.39 E-value=2.9 Score=35.77 Aligned_cols=40 Identities=15% Similarity=0.143 Sum_probs=34.8
Q ss_pred cccccccccC-hhHHHHHHHHHHHHHHHHHHHHHHhccChh
Q psy9205 3 KEQGFQITLN-LPRAIWIAMPIVTLVYVCANVAYFTVLTKE 42 (220)
Q Consensus 3 a~E~k~p~~~-~p~ai~~~~~~~~~~y~~~~~~~~~~~~~~ 42 (220)
.+|.|+++++ ++|++..+..+..++|+......+...+.+
T Consensus 216 ~~~~~~~~~~~~~k~~~~~~~~~~vlyi~~~~~~~~~~~~~ 256 (415)
T COG0814 216 VNYMRKNSKKAVRKAILIGSLIALVLYILVGFFVFGCFGSL 256 (415)
T ss_pred HHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc
Confidence 4678877776 999999999999999999999888888765
No 56
>KOG1303|consensus
Probab=93.94 E-value=1.1 Score=38.50 Aligned_cols=38 Identities=16% Similarity=0.157 Sum_probs=32.4
Q ss_pred cccccccChhHHHHHHHHHHHHHHHHHHHHHHhccChhh
Q psy9205 5 QGFQITLNLPRAIWIAMPIVTLVYVCANVAYFTVLTKEE 43 (220)
Q Consensus 5 E~k~p~~~~p~ai~~~~~~~~~~y~~~~~~~~~~~~~~~ 43 (220)
.+|+|++ ++|+...+..+++.+|+..++.-+.+.+++.
T Consensus 253 tMk~p~~-f~~~~lis~~~~~~~y~~vai~GY~aFG~~~ 290 (437)
T KOG1303|consen 253 TMKSPPK-FKKALLISYIIVTFLYFPVAIIGYWAFGDSV 290 (437)
T ss_pred hcCCchh-hhhHHHHHHHHHHHHHHHHHHhhhhhhcccc
Confidence 4688888 9999999999999999999888877776443
No 57
>TIGR00814 stp serine transporter. The HAAAP family includes well characterized aromatic amino acid:H+ symport permeases and hydroxy amino acid permeases. This subfamily is specific for hydroxy amino acid transporters and includes the serine permease, SdaC, of E. coli, and the threonine permease, TdcC, of E. coli.
Probab=93.82 E-value=2.3 Score=36.18 Aligned_cols=90 Identities=10% Similarity=0.001 Sum_probs=52.6
Q ss_pred cccccc---ccChhHHHHHHHHHHHHHHHHHHHHHHhccChhhhccc----hhHHHHHHHHhccc-hhHHHHHHHHHHHH
Q psy9205 4 EQGFQI---TLNLPRAIWIAMPIVTLVYVCANVAYFTVLTKEEMLTS----PAVAVTFGGKIYKE-LVWIIPILVAMSTF 75 (220)
Q Consensus 4 ~E~k~p---~~~~p~ai~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~g~-~~~~~~~~~~~~~~ 75 (220)
||-+|| +|..-|++..+..+..++|++..+++.+..+++++.+. .+....+.+....+ ...+..+...++..
T Consensus 214 ~~~~~~~~~~~k~~k~i~~~~~i~~~~y~~~~~s~~~~l~~~~~~~a~~~nis~Ls~l~~~~~~~~i~~~~~~f~~~Ai~ 293 (397)
T TIGR00814 214 EEYGDKEFAERKCLRIMKGASLILVATVMFFVFSCVLSLSPAEAVAAKEQNISILSYLANHFNAAWISYAGPIVAIVAIS 293 (397)
T ss_pred HHcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHcCcHHHHHHHhhcCCcHHHHHHHHHHHHHHH
Confidence 444544 57778999999999999999999999999998886431 12233333322222 33444444444444
Q ss_pred HHHHHHHhhhhHHHHHhh
Q psy9205 76 GGVNGILFTSARLFLTGS 93 (220)
Q Consensus 76 ~~~~~~~~~~sR~l~~~a 93 (220)
++-.+...+...-+..+-
T Consensus 294 tSFlG~~lg~~e~l~~l~ 311 (397)
T TIGR00814 294 KSFFGHYLGAREGLNGIV 311 (397)
T ss_pred HHHHHHHHhHHHHHHHHH
Confidence 444444444444443333
No 58
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional
Probab=93.04 E-value=5.4 Score=34.38 Aligned_cols=81 Identities=12% Similarity=0.090 Sum_probs=49.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhccC-hhhhccchhHHHHHHHHhccch-hHHHHHHHHHHHHHHHHHHHhhhhHHHH
Q psy9205 13 LPRAIWIAMPIVTLVYVCANVAYFTVLT-KEEMLTSPAVAVTFGGKIYKEL-VWIIPILVAMSTFGGVNGILFTSARLFL 90 (220)
Q Consensus 13 ~p~ai~~~~~~~~~~y~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~sR~l~ 90 (220)
.-++-.++.....++|....+.-....+ .++..+.........++.+|.. ..++.+.+.++++++..+...+.++-..
T Consensus 228 t~~ag~ia~~~L~~vY~gL~~lGa~s~~~~~~~~~g~~il~~~~~~~~G~~G~~ll~iiv~lACLTTaIGLi~a~a~~f~ 307 (439)
T PRK15433 228 TVWAGLMAGVGLTLLYLALFRLGSDSASLVDQSANGAAILHAYVQHTFGGGGSFLLAALIFIACLVTAVGLTCACAEFFA 307 (439)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCcccccCCCcHhHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555555666655443322222 1122133344445556667776 5888999999999999999999998766
Q ss_pred Hhh
Q psy9205 91 TGS 93 (220)
Q Consensus 91 ~~a 93 (220)
+.-
T Consensus 308 ~~~ 310 (439)
T PRK15433 308 QYV 310 (439)
T ss_pred hhc
Confidence 553
No 59
>PLN03074 auxin influx permease; Provisional
Probab=92.56 E-value=6.6 Score=34.25 Aligned_cols=38 Identities=11% Similarity=0.035 Sum_probs=29.0
Q ss_pred ccccccccChhHHHHHHHHHHHHHHHHHHHHHHhccChh
Q psy9205 4 EQGFQITLNLPRAIWIAMPIVTLVYVCANVAYFTVLTKE 42 (220)
Q Consensus 4 ~E~k~p~~~~p~ai~~~~~~~~~~y~~~~~~~~~~~~~~ 42 (220)
.|+|||+ ++++....+......+|+..++..+...+++
T Consensus 257 ~~M~~P~-~F~~~~~l~~~~v~~~y~~~~~~gY~~fG~~ 294 (473)
T PLN03074 257 HAMWKPQ-KFKYIYLAATLYVLTLTLPSAAAVYWAFGDE 294 (473)
T ss_pred HhccChh-cccchHHHHHHHHHHHHHHHHHeeeeeechh
Confidence 5899996 5888888888888888888776666666654
No 60
>PF01490 Aa_trans: Transmembrane amino acid transporter protein; InterPro: IPR013057 This transmembrane region is found in many amino acid transporters including P34579 from SWISSPROT (UNC-47) and P40501 from SWISSPROT (MTR). UNC-47 encodes a vesicular amino butyric acid (GABA) transporter, (VGAT) and is is predicted to have 10 transmembrane domains UNC47_CAEEL []. MTR is an N system amino acid transporter system protein involved in methyltryptophan resistance MTR_NEUCR. Other members of this family include proline transporters and amino acid transporters whose specificity has not yet been identified.
Probab=92.02 E-value=0.08 Score=44.71 Aligned_cols=145 Identities=12% Similarity=0.128 Sum_probs=76.9
Q ss_pred ccccccccc--ChhHHHHHHHHHHHHHHHHHHHHHHhccChhhhccchhHHHHHHHHhccchhHHHHHHHHHHHHHHHHH
Q psy9205 3 KEQGFQITL--NLPRAIWIAMPIVTLVYVCANVAYFTVLTKEEMLTSPAVAVTFGGKIYKELVWIIPILVAMSTFGGVNG 80 (220)
Q Consensus 3 a~E~k~p~~--~~p~ai~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 80 (220)
-+|+|+|+| ++.|+...+...+.++|.+....-+...+++. .+ .....+.+. ++...+..+...+..+.+.--
T Consensus 215 ~~~m~~~~~~~~~~~~~~~s~~~~~~~y~~~g~~gy~~fg~~~-~~--~il~n~~~~--~~~~~i~~~~~~i~~~~s~pl 289 (409)
T PF01490_consen 215 QSEMKDPSKFKKMKKVLSISMIICFIIYLLFGIFGYLAFGDSV-QG--NILLNLPND--DVLIIIARILLVISLLLSYPL 289 (409)
T ss_pred eeeccCCccccccceeeeehhhhhhHHhhhhhhcccceeeeee-cc--hhhhcCCCc--ccccccccccchhhhhhcccc
Confidence 478999885 46699999999999999998876666555322 11 111111100 012334444444444444444
Q ss_pred HHhhhhHHHHHhhccC-----CCchhhhh-hchh------hHHHHHHH-HhhhcHHHHHHHHHHH--HHHHHHHHHHHHH
Q psy9205 81 ILFTSARLFLTGSQEG-----HLPPLFSY-IHIK------ICLMSVLM-LVTSDVFALINYMSVA--LWLSVGACTAGLI 145 (220)
Q Consensus 81 ~~~~~sR~l~~~a~dg-----~lP~~f~~-~~~~------~~~~~~~~-~~~~~~~~l~~~~~~~--~~~~~~~~~~~~~ 145 (220)
......+.+...-++. .-++.-.+ ...+ ..+++... ...+++..+.++.+.. ..+.|.+....++
T Consensus 290 ~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iA~~vp~~~~i~~l~Ga~~~~~i~fi~P~l~~~ 369 (409)
T PF01490_consen 290 QLFPARNSLENLLFKRAASSRDSPKNTPSSRWLRYLIRIILVLLSFLIAIFVPNFGDIISLVGALFGSFISFILPALLYL 369 (409)
T ss_pred ccchhHhhhhhheeccccccccccccccccceeeeeeecchhhhhhhhhhhccchhhhhcccchHHHHhHHHHHHHHHHH
Confidence 4555555555554432 11111111 1111 12222222 2346777777666433 3688888888888
Q ss_pred hhhccCC
Q psy9205 146 SLRFTQP 152 (220)
Q Consensus 146 ~~r~~~~ 152 (220)
+.++++.
T Consensus 370 ~~~~~~~ 376 (409)
T PF01490_consen 370 KLFKRKR 376 (409)
T ss_pred Hhhcccc
Confidence 8777654
No 61
>PF01566 Nramp: Natural resistance-associated macrophage protein; InterPro: IPR001046 The natural resistance-associated macrophage protein (NRAMP) family consists of Nramp1, Nramp2, and yeast proteins Smf1 and Smf2. The NRAMP family is a novel family of functionally related proteins defined by a conserved hydrophobic core of ten transmembrane domains []. Nramp1 is an integral membrane protein expressed exclusively in cells of the immune system and is recruited to the membrane of a phagosome upon phagocytosis. Nramp2 is a multiple divalent cation transporter for Fe2+, Mn2+ and Zn2+ amongst others. It is expressed at high levels in the intestine; and is major transferrin-independent iron uptake system in mammals []. The yeast proteins Smf1 and Smf2 may also transport divalent cations []. The natural resistance of mice to infection with intracellular parasites is controlled by the Bcg locus, which modulates the cytostatic/cytocidal activity of phagocytes. Nramp1, the gene responsible, is expressed exclusively in macrophages and poly-morphonuclear leukocytes, and encodes a polypeptide (natural resistance-associated macrophage protein) with features typical of integral membrane proteins. Other transporter proteins from a variety of sources also belong to this family.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane
Probab=91.75 E-value=3.8 Score=34.23 Aligned_cols=42 Identities=7% Similarity=-0.065 Sum_probs=33.1
Q ss_pred HHHHhcc-ch-hHHHHHHHHHHHHHHHHHHHhhhhHHHHHhhcc
Q psy9205 54 FGGKIYK-EL-VWIIPILVAMSTFGGVNGILFTSARLFLTGSQE 95 (220)
Q Consensus 54 ~~~~~~g-~~-~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~d 95 (220)
..+...| .. ..++.++.+.+.+++..+...+.++.+.+.-+-
T Consensus 244 ~L~~~~G~~~a~~lF~igl~~a~fss~i~~~~~~~~~~~~~~~~ 287 (358)
T PF01566_consen 244 ALEPLLGSPWARYLFAIGLFAAGFSSSITATLAGAYVLADFLGW 287 (358)
T ss_pred HHHHhcCchHHHHhHHHHHHHHHHhhHHHhccccceehHhhhcC
Confidence 3345566 34 689999999999999999999999988877643
No 62
>PTZ00206 amino acid transporter; Provisional
Probab=90.97 E-value=3.4 Score=35.96 Aligned_cols=39 Identities=15% Similarity=0.037 Sum_probs=31.2
Q ss_pred ccccccc-cChhHHHHHHHHHHHHHHHHHHHHHHhccChh
Q psy9205 4 EQGFQIT-LNLPRAIWIAMPIVTLVYVCANVAYFTVLTKE 42 (220)
Q Consensus 4 ~E~k~p~-~~~p~ai~~~~~~~~~~y~~~~~~~~~~~~~~ 42 (220)
+|+|||. |+..+....+..++.++|......-+...+++
T Consensus 280 ~~M~~~t~~~~~~v~~~s~~i~~~lY~~~G~~GYl~fG~~ 319 (467)
T PTZ00206 280 MDMTNRSVGKFVLASTIAMGMCFTMYVLTAFFGYMDFGRN 319 (467)
T ss_pred HhhcccchhHHHHHHHHHHHHHHHHHHHHHHhhhhccccc
Confidence 5788865 67889999999999999999888776666643
No 63
>COG1953 FUI1 Cytosine/uracil/thiamine/allantoin permeases [Nucleotide transport and metabolism / Coenzyme metabolism]
Probab=90.41 E-value=11 Score=33.02 Aligned_cols=28 Identities=7% Similarity=0.020 Sum_probs=13.7
Q ss_pred cccccccChhHHHHHHHHHHHHHHHHHHH
Q psy9205 5 QGFQITLNLPRAIWIAMPIVTLVYVCANV 33 (220)
Q Consensus 5 E~k~p~~~~p~ai~~~~~~~~~~y~~~~~ 33 (220)
+.|+| |+.-++..+++.+...++.+..+
T Consensus 266 fa~s~-~~~~~gq~~gLPv~~~l~~ligv 293 (497)
T COG1953 266 FAKSQ-KAQIWGQLVGLPVNFALFSLIGV 293 (497)
T ss_pred ccCCh-hhhhhccchhhhHHHHHHHHHHh
Confidence 44443 34445555555555555554443
No 64
>COG1115 AlsT Na+/alanine symporter [Amino acid transport and metabolism]
Probab=89.99 E-value=12 Score=32.28 Aligned_cols=95 Identities=6% Similarity=-0.068 Sum_probs=58.1
Q ss_pred ccccccccccChhHHHHHHHHHHHHHHHHHHHHHHhccChhhh--ccchhHHHHHHHHhccch-hHHHHHHHHHHHHHHH
Q psy9205 2 SKEQGFQITLNLPRAIWIAMPIVTLVYVCANVAYFTVLTKEEM--LTSPAVAVTFGGKIYKEL-VWIIPILVAMSTFGGV 78 (220)
Q Consensus 2 ~a~E~k~p~~~~p~ai~~~~~~~~~~y~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~ 78 (220)
++.+++||.|.=-..+....+=+.++.....+.....-.++.- .++..+.+...++.+|.+ ..++.+..++=.+++.
T Consensus 288 AaA~~~hPv~QGlv~~~gvfiDT~iVCt~Ta~iIL~sg~~~~~~~~~G~~ltq~A~~~~~g~~G~~fv~i~l~lFafTTI 367 (452)
T COG1115 288 AAAKTDHPVKQGLVQMLGVFIDTLVVCTATAFIILLSGAWNSGGGLSGAALTQAAFSSHLGSWGSYFVAIALFLFAFTTI 367 (452)
T ss_pred HhhcCCCcHHHhHHHHhhhhhhhhHHhhHHHHHHHHcCCcccCCCCchHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHH
Confidence 3567888888655444443333444444433333222222221 244456666667777765 5888888888899999
Q ss_pred HHHHhhhhHHHHHhhccC
Q psy9205 79 NGILFTSARLFLTGSQEG 96 (220)
Q Consensus 79 ~~~~~~~sR~l~~~a~dg 96 (220)
+++.+..=|-+.=+.+++
T Consensus 368 lg~yyyge~~~~fl~~~k 385 (452)
T COG1115 368 LGWYYYGEKNIEFLFGSK 385 (452)
T ss_pred HHHHHHHHHHHHHHhCCc
Confidence 999888877776666444
No 65
>TIGR00794 kup potassium uptake protein. Proteins of the KUP family include the KUP (TrkD) protein of E. coli, a partially sequenced ORF from Lactococcus lactis, high affinity K+ uptake systems (Hak1) of the yeast Debaryomyces occidentalis as well as the fungus, Neurospora crassa, and several homologues in plants. While the E. coli KUP protein is assumed to be a secondary transporter, and uptake is blocked by protonophores such as CCCP (but not arsenate), the energy coupling mechanism has not been defined. However, the N. crassa protein has been shown to be a K+:H+ symporter, establishing that the KUP family consists of secondary carriers. The plant high affinity (20mM) K+ transporter can complement K+ uptake defects in E. coli.
Probab=89.70 E-value=6.4 Score=35.84 Aligned_cols=84 Identities=12% Similarity=0.092 Sum_probs=46.1
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHhhhhHHHHHhhccCCCch-hhhhhchh------------hHHHHHHHH--hhhcHHH
Q psy9205 60 KELVWIIPILVAMSTFGGVNGILFTSARLFLTGSQEGHLPP-LFSYIHIK------------ICLMSVLML--VTSDVFA 124 (220)
Q Consensus 60 g~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~dg~lP~-~f~~~~~~------------~~~~~~~~~--~~~~~~~ 124 (220)
++..+.+.+.+.++..-+-.+.+.++=-+..+.-+-|.+|+ ...+++++ ...++++.. .+.+-+.
T Consensus 309 ~~~~~p~~vlAtlAtIIASQA~IsG~FSl~~Qai~Lg~~Pr~~I~hTS~~~~GQIYiP~vNw~Lmv~~i~vvl~F~~S~~ 388 (688)
T TIGR00794 309 DWALWPLFIIATLAAIIASQAVISGVFSITSQAVRLGCFPRVKIIHTSEKYHGQIYIPFVNWLLMLGVIAVTAGFRDTNN 388 (688)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCceEEecCCccCCceeeHHHHHHHHHHHHheeEEecChHH
Confidence 34444444444444444444445555555566677899993 23444444 122222222 3466777
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy9205 125 LINYMSVALWLSVGACTAG 143 (220)
Q Consensus 125 l~~~~~~~~~~~~~~~~~~ 143 (220)
+.+..+++......++.+-
T Consensus 389 la~AYGiaVt~tM~iTT~L 407 (688)
T TIGR00794 389 LGAAYGIAVTGTFLVTTCL 407 (688)
T ss_pred HHHHhhhhhhhhhHHHHHH
Confidence 8888888777777766443
No 66
>KOG1305|consensus
Probab=89.25 E-value=13 Score=31.81 Aligned_cols=40 Identities=15% Similarity=0.164 Sum_probs=31.4
Q ss_pred ccccccc-cChhHHHHHHHHHHHHHHHHHHHHHHhccChhh
Q psy9205 4 EQGFQIT-LNLPRAIWIAMPIVTLVYVCANVAYFTVLTKEE 43 (220)
Q Consensus 4 ~E~k~p~-~~~p~ai~~~~~~~~~~y~~~~~~~~~~~~~~~ 43 (220)
.|.|||+ |++-+....+...+.++|......-+...+++.
T Consensus 218 ~El~~~s~~~i~~v~~~~~~~~~~iy~~~g~~GYL~Fg~~v 258 (411)
T KOG1305|consen 218 NELKDRSVKKIQRVSNIAIILATLIYLLTGLFGYLTFGDLV 258 (411)
T ss_pred eeeeCchHHHHHHHHHHHHHHHHHHHHHHHHhhhheecccc
Confidence 6888887 588888889999999999988776666665443
No 67
>PRK09442 panF sodium/panthothenate symporter; Provisional
Probab=88.66 E-value=16 Score=31.93 Aligned_cols=79 Identities=16% Similarity=0.120 Sum_probs=37.2
Q ss_pred ccccccChhHHHHHHHHHHHHHHHHHHHHH---HhccChhhhccchhHHHHHHHHhccc-hhHHHHHHHHHHHHHHHHHH
Q psy9205 6 GFQITLNLPRAIWIAMPIVTLVYVCANVAY---FTVLTKEEMLTSPAVAVTFGGKIYKE-LVWIIPILVAMSTFGGVNGI 81 (220)
Q Consensus 6 ~k~p~~~~p~ai~~~~~~~~~~y~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~ 81 (220)
.|| +|+..|+..++......+++.....- ....|+.+ ..+....... .+..|. ..-++..+++.+..++..+.
T Consensus 263 aks-~~~a~~~~~~~~~~~~~~~~~~~~~G~~~~~~~p~~~-~~~~~~p~l~-~~~lp~~l~gl~~a~~~aA~mST~~s~ 339 (483)
T PRK09442 263 YKD-SKALHRGIIIGTIVVGFLMFGMHLAGALGRAVLPDLT-VPDKVIPTLM-LKVLPPFAAGIFLAAPMAAIMSTVDSQ 339 (483)
T ss_pred cCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC-CccchHHHHH-HHHcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 344 34666777777665555544332211 11123211 1122233333 333443 45555666666666666666
Q ss_pred HhhhhH
Q psy9205 82 LFTSAR 87 (220)
Q Consensus 82 ~~~~sR 87 (220)
+.+.+=
T Consensus 340 l~~~ss 345 (483)
T PRK09442 340 LLQSSS 345 (483)
T ss_pred HHHHHH
Confidence 655544
No 68
>PF01235 Na_Ala_symp: Sodium:alanine symporter family; InterPro: IPR001463 Sodium symporters can be divided by sequence and functional similarity into various groups. One such group is the sodium/alanine symporter family, the members of which transport alanine in association with sodium ions. These transporters are believed to possess 8 transmembrane (TM) helices [, ], forming a channel or pore through the cytoplasmic membrane, the interior face being hydrophilic to allow the passage of alanine molecules and sodium ions []. This family is restricted to the bacteria and archaea, examples are the alanine carrier protein from the Bacillus PS3 (Thermophilic bacterium PS-3); the D-alanine/glycine permease from Pseudoalteromonas haloplanktis (Alteromonas haloplanktis); and the hypothetical protein yaaJ from Escherichia coli.; GO: 0005283 sodium:amino acid symporter activity, 0006814 sodium ion transport, 0016020 membrane
Probab=88.62 E-value=6.3 Score=33.72 Aligned_cols=92 Identities=7% Similarity=-0.026 Sum_probs=55.1
Q ss_pred ccccccccccChhHHHHHHHHHHHHHHHHHHHHHHhccC--hhhhccchhHHHHHHHHhccch-hHHHHHHHHHHHHHHH
Q psy9205 2 SKEQGFQITLNLPRAIWIAMPIVTLVYVCANVAYFTVLT--KEEMLTSPAVAVTFGGKIYKEL-VWIIPILVAMSTFGGV 78 (220)
Q Consensus 2 ~a~E~k~p~~~~p~ai~~~~~~~~~~y~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~ 78 (220)
++.|+++|.|.=-.++.-..+=+.++..+..++....-. .++-.++..+.+...+...|.+ ..++.+..++-.++++
T Consensus 244 a~a~~~hP~~QGl~~~~~vFiDTiiVCt~TalvIl~tG~~~~~~~~~g~~l~~~Af~~~~g~~g~~~v~i~l~lFafTTi 323 (416)
T PF01235_consen 244 AAAETDHPVRQGLVQMFEVFIDTIIVCTITALVILVTGVWSWGSGLEGAALTQAAFSTVLGSWGPYFVAIALFLFAFTTI 323 (416)
T ss_pred HHhcCCCcHHHeeeeeehHhHHHHHHHHHHHHHhhccCCCCCCCcchHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Confidence 356888998876655555444444444444443322211 1111122344455555666655 5788888888889999
Q ss_pred HHHHhhhhHHHHHhh
Q psy9205 79 NGILFTSARLFLTGS 93 (220)
Q Consensus 79 ~~~~~~~sR~l~~~a 93 (220)
.++.+..-+.+.-+.
T Consensus 324 lg~~~yge~~~~yl~ 338 (416)
T PF01235_consen 324 LGWYYYGEKCAEYLF 338 (416)
T ss_pred HHHHHHHHHHHHHHc
Confidence 998888877766555
No 69
>TIGR00835 agcS amino acid carrier protein. Members of the AGCS family transport alanine and/or glycine in symport with Na+ and or H+.
Probab=86.79 E-value=19 Score=30.93 Aligned_cols=143 Identities=8% Similarity=-0.029 Sum_probs=72.3
Q ss_pred ccccccccccChhHHHHHHHHHHHHHHHHHHHHHHhccChh--hhccchhHHHHHHHHhccch-hHHHHHHHHHHHHHHH
Q psy9205 2 SKEQGFQITLNLPRAIWIAMPIVTLVYVCANVAYFTVLTKE--EMLTSPAVAVTFGGKIYKEL-VWIIPILVAMSTFGGV 78 (220)
Q Consensus 2 ~a~E~k~p~~~~p~ai~~~~~~~~~~y~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~ 78 (220)
++.|++||.|.=-.++.-..+=+.++.....+.....-.++ +-.++..+.+...+..+|.+ ..++.+..++-.+++.
T Consensus 271 a~a~~~hP~~QGl~~~~~vfiDTivvCt~Talvil~tg~~~~~~~~~g~~lt~~af~~~~g~~g~~~v~i~~~lFaftTi 350 (425)
T TIGR00835 271 AAAQVSHPVRQGLVQMLGVFIDTMIVCTATALVILLSGVWNNGEGLSGAQLTQQALSYGLGSFGAVFVAVALFLFAFSTI 350 (425)
T ss_pred HHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccCCCCCCcHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 35678899986655555444433333333333222211111 11122344444555555644 5888888888889999
Q ss_pred HHHHhhhhHHHHHhhccCCCchhhhhhchhhHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy9205 79 NGILFTSARLFLTGSQEGHLPPLFSYIHIKICLMSVLMLVTSDVFALINYMSVALWLSVGACTAGLISLRF 149 (220)
Q Consensus 79 ~~~~~~~sR~l~~~a~dg~lP~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~r~ 149 (220)
.++.+..-+.+.-+-+++.. +.-+-..++.+......+.+.+.+++.+..-+.-....++.+.+++
T Consensus 351 i~~~yyge~~~~yl~~~~~~-----~~~r~~~~~~~~~g~~~~~~~vw~~~D~~~~lm~i~Nlial~~L~~ 416 (425)
T TIGR00835 351 IGWYYYGEKNAEFLKGNKKV-----KLYRLVFLAAVFVGAFLSLDLVWNLADLSMGLMAIPNLIAILLLRK 416 (425)
T ss_pred HHHHHHHHHHHHHhcCCCcc-----ceeeehhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99888887776666433310 0000022222222233344545555544444444444455555544
No 70
>PRK00701 manganese transport protein MntH; Reviewed
Probab=86.17 E-value=21 Score=30.82 Aligned_cols=29 Identities=7% Similarity=-0.032 Sum_probs=16.5
Q ss_pred HHhccch-hHHHHHHHHHHHHHHHHHHHhh
Q psy9205 56 GKIYKEL-VWIIPILVAMSTFGGVNGILFT 84 (220)
Q Consensus 56 ~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~ 84 (220)
+..+|.. ..++.++.+.+.+++..+...+
T Consensus 301 ~p~~G~~a~~lFaiGL~aag~sS~i~~~~a 330 (439)
T PRK00701 301 SPLLGAAAATLFGIALLASGLSSTVVGTLA 330 (439)
T ss_pred HHHHhHHHHHHHHHHHHHhHhHHHhHHHHH
Confidence 4555554 4777777766655555443333
No 71
>COG1114 BrnQ Branched-chain amino acid permeases [Amino acid transport and metabolism]
Probab=86.08 E-value=21 Score=30.56 Aligned_cols=40 Identities=8% Similarity=0.317 Sum_probs=31.8
Q ss_pred hHHHHHHHHhccchh-HHHHHHHHHHHHHHHHHHHhhhhHH
Q psy9205 49 AVAVTFGGKIYKELV-WIIPILVAMSTFGGVNGILFTSARL 88 (220)
Q Consensus 49 ~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~sR~ 88 (220)
.......++.+|..+ .++.+.++++|+.+..+.+.+++..
T Consensus 263 ~IL~~~s~~~fG~~G~~lL~~iv~lACLTTaiGLi~a~aef 303 (431)
T COG1114 263 QILSAYSQHLFGSYGSILLGLIVFLACLTTAVGLIVACAEF 303 (431)
T ss_pred HHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455556678888875 7888899999999999988888753
No 72
>PRK10745 trkD potassium transport protein Kup; Provisional
Probab=86.07 E-value=6.8 Score=35.17 Aligned_cols=83 Identities=13% Similarity=0.063 Sum_probs=43.2
Q ss_pred chhHHHHHHHHHHHHHHHHHHHhhhhHHHHHhhccCCCch-hhhhhchh------------hHHHHHHHH--hhhcHHHH
Q psy9205 61 ELVWIIPILVAMSTFGGVNGILFTSARLFLTGSQEGHLPP-LFSYIHIK------------ICLMSVLML--VTSDVFAL 125 (220)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~dg~lP~-~f~~~~~~------------~~~~~~~~~--~~~~~~~l 125 (220)
+..+.+.+.+.++..-+-.+.+.++=-+..+.-+-|.+|+ ...+++++ ...++++.. .+.+-+.+
T Consensus 284 ~~~~p~viLATlAtIIASQAvISGaFSl~~QAi~Lg~~Prl~I~hTS~~~~GQIYIP~vNw~Lmv~~i~~vl~F~sS~~L 363 (622)
T PRK10745 284 WALIPLLILATLATVIASQAVISGVFSLTRQAVRLGYLPPMRIIHTSEMESGQIYIPFVNWLLYVAVVIVIVSFEHSSNL 363 (622)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhCCCCCceEEeCCCccCCceeeHHHHHHHHHHHHeeEEEecCchHH
Confidence 3334444433333333333444444455556667799993 23444444 122222222 34566778
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy9205 126 INYMSVALWLSVGACTAG 143 (220)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~ 143 (220)
.+.-+++......++.+-
T Consensus 364 a~AYGiAVt~tM~iTT~L 381 (622)
T PRK10745 364 AAAYGIAVTGTMVLTSIL 381 (622)
T ss_pred HHHhhhhheeHhHHHHHH
Confidence 888787776666666443
No 73
>PLN00151 potassium transporter; Provisional
Probab=84.40 E-value=16 Score=34.05 Aligned_cols=89 Identities=12% Similarity=0.141 Sum_probs=47.4
Q ss_pred HHHHhccchhHHHHHHHHHHHHHHHHHHHhhhhHHHHHhhccCCCchh-hhhhchh------------hHHH-HHHHH-h
Q psy9205 54 FGGKIYKELVWIIPILVAMSTFGGVNGILFTSARLFLTGSQEGHLPPL-FSYIHIK------------ICLM-SVLML-V 118 (220)
Q Consensus 54 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~dg~lP~~-f~~~~~~------------~~~~-~~~~~-~ 118 (220)
++.....++.+.+.++++++..-+-.+.+.++=-+....-+-|.+|+. .-|++++ ...+ ++... .
T Consensus 409 Fy~svP~~~~wP~~vlAtlAaIIASQA~ISgtFSii~Qai~Lg~fPRvkIvHTS~~~~GQIYIP~vNw~Lmv~~i~v~l~ 488 (852)
T PLN00151 409 FFSSVPSSLFWPVFLIANLAALIASRAMTTATFSCIKQSMALGCFPRLKIIHTSRKFMGQIYIPVINWFLLVMCLVVVCS 488 (852)
T ss_pred HHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCceEEeCCCccCCceeeHHHHHHHHHHHHhheee
Confidence 444444444455544444444444444555555555566677999933 3444444 1222 22222 3
Q ss_pred hhcHHHHHHHHHHHHHHHHHHHHH
Q psy9205 119 TSDVFALINYMSVALWLSVGACTA 142 (220)
Q Consensus 119 ~~~~~~l~~~~~~~~~~~~~~~~~ 142 (220)
+.+-..+.+..+++......++.+
T Consensus 489 F~~s~~l~~AYGiAV~~vM~iTT~ 512 (852)
T PLN00151 489 FRSITDIGNAYGIAEVGVMMVSTI 512 (852)
T ss_pred ecCHHHHHHHhhhhhhhhhhHHHH
Confidence 456677887777777666666543
No 74
>TIGR00813 sss transporter, SSS family. have different numbers of TMSs. A 13 TMS topology with a periplasmic N-terminus and a cytoplasmic C-terminus has been experimentally determined for the proline:Na+ symporter, PutP, of E. coli.
Probab=84.33 E-value=24 Score=29.89 Aligned_cols=79 Identities=9% Similarity=0.038 Sum_probs=39.1
Q ss_pred ccChhHHHHHHHHHHHHHHHHHHH---HHHhccCh--hhhc-----cchhHHHHHHHHhccc-hhHHHHHHHHHHHHHHH
Q psy9205 10 TLNLPRAIWIAMPIVTLVYVCANV---AYFTVLTK--EEML-----TSPAVAVTFGGKIYKE-LVWIIPILVAMSTFGGV 78 (220)
Q Consensus 10 ~~~~p~ai~~~~~~~~~~y~~~~~---~~~~~~~~--~~~~-----~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~ 78 (220)
+|+..|+...+.......+.+... ......+. +++. +.+.....+..+.+|+ ..-++.++++.+..++.
T Consensus 232 ~~~~r~~~~~~~~~~~~~~~~~~l~G~~a~~~~~~~~p~~~~~~~~~~~~~~p~~~~~~lp~~l~gl~~agilaA~mST~ 311 (407)
T TIGR00813 232 AKHAKKGCLISGVLKLLPMFGAVLPGLIARALYTDIDPALAGAVNQNSDQAYPLLVQELMPPGLAGLFLAAILAAVMSTL 311 (407)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcccChhhhcccCCChhhHHHHHHHHHcCcchHHHHHHHHHHHHHHhh
Confidence 567778887776655554433221 11111111 1111 2222222333444444 45666666666777777
Q ss_pred HHHHhhhhHH
Q psy9205 79 NGILFTSARL 88 (220)
Q Consensus 79 ~~~~~~~sR~ 88 (220)
.+.+.+.+-.
T Consensus 312 ~s~l~a~ss~ 321 (407)
T TIGR00813 312 SSQLNSASTV 321 (407)
T ss_pred hhhHHHHHHH
Confidence 7666666554
No 75
>PLN00150 potassium ion transporter family protein; Provisional
Probab=83.91 E-value=13 Score=34.26 Aligned_cols=89 Identities=17% Similarity=0.165 Sum_probs=48.1
Q ss_pred HHHHhccchhHHHHHHHHHHHHHHHHHHHhhhhHHHHHhhccCCCchh-hhhhchh------------hHHHHHHHH--h
Q psy9205 54 FGGKIYKELVWIIPILVAMSTFGGVNGILFTSARLFLTGSQEGHLPPL-FSYIHIK------------ICLMSVLML--V 118 (220)
Q Consensus 54 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~dg~lP~~-f~~~~~~------------~~~~~~~~~--~ 118 (220)
++....++..+.+.+.+.++..-+-.+.+.++=-+....-+-|.+|+. .-+++++ ...++++.. .
T Consensus 349 Ff~~iP~~~~~P~~vlAtlAtIIASQA~ISg~FSi~~Qai~Lg~fPrvkI~hTS~~~~GQIYIP~vNw~Lmv~~i~vv~~ 428 (779)
T PLN00150 349 FYRSLPKPIYWPIFVLATCSAMIASQAMISATFSIVKQAMALGCFPRVKIVHTSNKVHGQVYIPEINWILMVLCLVITAG 428 (779)
T ss_pred HHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCceEEecCcccCCceeeHHHHHHHHHHHHhheEE
Confidence 334444444455555544444444445555555556666678999933 3445554 122222222 3
Q ss_pred hhcHHHHHHHHHHHHHHHHHHHHH
Q psy9205 119 TSDVFALINYMSVALWLSVGACTA 142 (220)
Q Consensus 119 ~~~~~~l~~~~~~~~~~~~~~~~~ 142 (220)
+.+-..+.+..+++......++.+
T Consensus 429 F~~s~~l~~AYGiAV~~vM~iTT~ 452 (779)
T PLN00150 429 FRDTDEIGNAYGIAVVGVMIITTC 452 (779)
T ss_pred ecChHHHHHHhhhheehhhHHHHH
Confidence 456677887777777666666543
No 76
>PF14256 YwiC: YwiC-like protein
Probab=82.97 E-value=14 Score=26.07 Aligned_cols=22 Identities=18% Similarity=0.022 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHhhhccC
Q psy9205 130 SVALWLSVGACTAGLISLRFTQ 151 (220)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~r~~~ 151 (220)
..+.+..|....-....+|.|+
T Consensus 31 ~~aw~~~yl~~~p~~~~~k~r~ 52 (129)
T PF14256_consen 31 LLAWLFGYLAFYPFLLWLKQRR 52 (129)
T ss_pred HHHHHHHHHHHHHHHHHHhccc
Confidence 4445556665544444555444
No 77
>COG1914 MntH Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism]
Probab=79.94 E-value=38 Score=29.10 Aligned_cols=30 Identities=0% Similarity=0.013 Sum_probs=16.5
Q ss_pred hccch-hHHHHHHHHHHHHHHHHHHHhhhhH
Q psy9205 58 IYKEL-VWIIPILVAMSTFGGVNGILFTSAR 87 (220)
Q Consensus 58 ~~g~~-~~~~~~~~~~~~~~~~~~~~~~~sR 87 (220)
..|.. ..++.+....+..++..+.-++...
T Consensus 281 ~~G~~~~~lF~v~llasg~~s~~~~~~a~~~ 311 (416)
T COG1914 281 LLGSAAFVLFGVALLAAGLSSTVVATYAGQI 311 (416)
T ss_pred hhhhHHHHHHHHHHHHhHHHHHHHHhhhhHH
Confidence 33443 3566666666666666555555444
No 78
>PLN00148 potassium transporter; Provisional
Probab=79.37 E-value=21 Score=33.07 Aligned_cols=82 Identities=12% Similarity=0.173 Sum_probs=42.7
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHhhhhHHHHHhhccCCCchh-hhhhchh------------hHHHHHHH--HhhhcHHH
Q psy9205 60 KELVWIIPILVAMSTFGGVNGILFTSARLFLTGSQEGHLPPL-FSYIHIK------------ICLMSVLM--LVTSDVFA 124 (220)
Q Consensus 60 g~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~dg~lP~~-f~~~~~~------------~~~~~~~~--~~~~~~~~ 124 (220)
++..+.+.+.+.++..-+-.+.+.++=-+....-+-|.+|+. .-+++++ ...++++. ..+.+-..
T Consensus 338 ~~~~~P~~vlAtlAtIIASQA~ISg~FSi~~Qai~Lg~fPrvkIvhTS~~~~GQIYIP~vNw~Lmv~~i~vv~~F~~s~~ 417 (785)
T PLN00148 338 DPVFWPVFVIATLAAIVGSQAVITATFSIVKQCHALGCFPRVKVVHTSKHIYGQIYIPEINWILMILTLAVTIGFRDTTL 417 (785)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCceEEecCCccCCceeeHHHHHHHHHHHHHhheeeccchh
Confidence 344444444444444444444555555555566677999933 3444444 12222222 23455666
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy9205 125 LINYMSVALWLSVGACT 141 (220)
Q Consensus 125 l~~~~~~~~~~~~~~~~ 141 (220)
+.+..+++......++.
T Consensus 418 la~AYGiAV~~vM~iTT 434 (785)
T PLN00148 418 IGNAYGLACMTVMFITT 434 (785)
T ss_pred HHHhhhhheeeHHHHHH
Confidence 77777777665555553
No 79
>PF02028 BCCT: BCCT family transporter; InterPro: IPR000060 These prokaryotic transport proteins belong to a family known as BCCT (for Betaine / Carnitine / Choline Transporters) and are specific for compounds containing a quaternary nitrogen atom. The BCCT proteins contain 12 transmembrane regions and are energized by proton symport. They contain a conserved region with four tryptophans in their central region [].; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 2WSX_B 3HFX_A 2WSW_A 4DOJ_B 2WIT_C 4AIN_A 3P03_B.
Probab=79.13 E-value=44 Score=29.37 Aligned_cols=89 Identities=15% Similarity=0.093 Sum_probs=55.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhhHHHHHhhccC-CCchhhhhhchh--hHHHHHHHHhh---hcHHHHHHHHHHHHHH
Q psy9205 62 LVWIIPILVAMSTFGGVNGILFTSARLFLTGSQEG-HLPPLFSYIHIK--ICLMSVLMLVT---SDVFALINYMSVALWL 135 (220)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~dg-~lP~~f~~~~~~--~~~~~~~~~~~---~~~~~l~~~~~~~~~~ 135 (220)
.+.++.+..++..+....+..-+.+..+-.++.+| .=|+...|.-=- .++++..+... +...++..+.++...+
T Consensus 390 ~~~i~~~~~lil~~~f~vTs~DS~~~~la~~s~~~~~ep~~~~ri~W~~~~~~~a~~ll~~ggl~~lq~~~ii~~lP~~~ 469 (485)
T PF02028_consen 390 LSKILSILFLILIFIFFVTSADSATYVLAMLSSKGDEEPPRWLRIFWGLIIGALAIVLLLIGGLDALQSASIIGGLPFSF 469 (485)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTSSS-HHHHHHHHHHHHHHHHHHHHHHSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHcCCCCCCchHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 45677777777777778888889999999999887 223222111000 33444444444 3455666777777777
Q ss_pred HHHHHHHHHHhhhcc
Q psy9205 136 SVGACTAGLISLRFT 150 (220)
Q Consensus 136 ~~~~~~~~~~~~r~~ 150 (220)
...+...+.+|.-|+
T Consensus 470 v~~~~~~~~~k~l~~ 484 (485)
T PF02028_consen 470 VMLLMCISFIKALKE 484 (485)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhc
Confidence 777777777765543
No 80
>COG3158 Kup K+ transporter [Inorganic ion transport and metabolism]
Probab=78.34 E-value=48 Score=29.64 Aligned_cols=60 Identities=17% Similarity=0.083 Sum_probs=31.4
Q ss_pred HHhhccCCCch-hhhhhchh------------hHHHHHH--HHhhhcHHHHHHHHHHHHHHHHHHHHHH-HHhhhc
Q psy9205 90 LTGSQEGHLPP-LFSYIHIK------------ICLMSVL--MLVTSDVFALINYMSVALWLSVGACTAG-LISLRF 149 (220)
Q Consensus 90 ~~~a~dg~lP~-~f~~~~~~------------~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~r~ 149 (220)
.+--|-|.+|+ ...+.+++ ...++.. ...+.+-+.+.+.-+++.-....++.+- ..+.|+
T Consensus 318 rQAi~Lg~lPrm~I~~TSe~~~GQIYiP~VN~~L~~~V~~~vl~F~~S~~LAaAYGiAVTgtM~iTt~L~~~~~~~ 393 (627)
T COG3158 318 RQAIRLGYLPRMRIRHTSETESGQIYIPAVNWLLLVAVVFVVLGFGSSSNLAAAYGIAVTGTMVITTILLTVVMRK 393 (627)
T ss_pred HHHHHhCCCCceEEEecCCcccceEEehHHHHHHHHHHhheeeEecChHHHHHhhChheeehhHHHHHHHHHHHHH
Confidence 34556799993 23444444 1122222 2234566677777777766666665443 334444
No 81
>COG1457 CodB Purine-cytosine permease and related proteins [Nucleotide transport and metabolism]
Probab=78.02 E-value=45 Score=28.89 Aligned_cols=37 Identities=8% Similarity=-0.019 Sum_probs=21.4
Q ss_pred HhccchhHHHHHHHHHHHHHHHHHHHhhhhHHHHHhh
Q psy9205 57 KIYKELVWIIPILVAMSTFGGVNGILFTSARLFLTGS 93 (220)
Q Consensus 57 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a 93 (220)
...|.++....+.+.++..++....+++++=-..+..
T Consensus 265 ~~~G~~g~~~~lil~l~~~ttN~~nlYsa~ls~~~i~ 301 (442)
T COG1457 265 LGLGGFGLPAILILVLGTVTTNANNLYSAGLSFANII 301 (442)
T ss_pred HhcccHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhh
Confidence 3344455666666666766666666666655444433
No 82
>PTZ00370 STEVOR; Provisional
Probab=77.86 E-value=2.9 Score=33.51 Aligned_cols=29 Identities=21% Similarity=0.334 Sum_probs=15.6
Q ss_pred HHHHHhhhhhhhehhhhccchhhhhhhcC
Q psy9205 192 FIIASGVPVYYVCVKWKSKPALLLEMHEH 220 (220)
Q Consensus 192 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 220 (220)
.++++.+++.++|.++|||..|+...++|
T Consensus 265 lil~vvliilYiwlyrrRK~swkhe~kkh 293 (296)
T PTZ00370 265 LILAVVLIILYIWLYRRRKNSWKHECKKH 293 (296)
T ss_pred HHHHHHHHHHHHHHHHhhcchhHHHHHhh
Confidence 33333333444455666667776665554
No 83
>PLN00149 potassium transporter; Provisional
Probab=76.41 E-value=66 Score=30.03 Aligned_cols=88 Identities=17% Similarity=0.183 Sum_probs=47.7
Q ss_pred HHHHhccchhHHHHHHHHHHHHHHHHHHHhhhhHHHHHhhccCCCchh-hhhhchh------------hHHHHHH-HH-h
Q psy9205 54 FGGKIYKELVWIIPILVAMSTFGGVNGILFTSARLFLTGSQEGHLPPL-FSYIHIK------------ICLMSVL-ML-V 118 (220)
Q Consensus 54 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~dg~lP~~-f~~~~~~------------~~~~~~~-~~-~ 118 (220)
++....++..+.+.+.+.++..-+-.+.+.++=-+....-+-|.+|+. .-+++++ ...++++ .. .
T Consensus 336 Fy~~iP~~~~~P~~vlAtlAaIIASQA~ISg~FSii~Qa~~Lg~fPrvkIvhTS~~~~GQIYIP~vNw~Lmv~~i~vv~~ 415 (779)
T PLN00149 336 FYVSVPEKLRWPVLVIAILAAVVGSQAIITGTFSIIKQCSALGCFPKVKIVHTSSKIHGQIYIPEINWTLMLLCLAVTVG 415 (779)
T ss_pred HHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCceEEecCcccCCceeeHHHHHHHHHHHHhheeE
Confidence 344444455555555555544444445555555566666777999933 3444544 1222222 22 3
Q ss_pred hhcHHHHHHHHHHHHHHHHHHHH
Q psy9205 119 TSDVFALINYMSVALWLSVGACT 141 (220)
Q Consensus 119 ~~~~~~l~~~~~~~~~~~~~~~~ 141 (220)
+.+-..+.+..+++......++.
T Consensus 416 F~~s~~l~~AYGiAV~~vM~iTT 438 (779)
T PLN00149 416 FRDTKRLGNASGLAVITVMLVTT 438 (779)
T ss_pred ecChHHHHHHhhhhhehHHHHHH
Confidence 45667788777777766666654
No 84
>PF03845 Spore_permease: Spore germination protein; InterPro: IPR004761 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. Spore germination protein (amino acid permease) is involved in the response to the germinative mixture of L-asparagine, glucose, fructose and potassium ions (AFFK). These proteins could be amino acid transporters.; GO: 0009847 spore germination, 0016021 integral to membrane
Probab=68.74 E-value=63 Score=26.35 Aligned_cols=86 Identities=13% Similarity=0.061 Sum_probs=58.0
Q ss_pred cccccccChhHHHHHHHHHHHHHHHHHHHHHHhccChhhhccchhHHHHHHH-Hhccc----hhHHHHHHHHHHHHHHHH
Q psy9205 5 QGFQITLNLPRAIWIAMPIVTLVYVCANVAYFTVLTKEEMLTSPAVAVTFGG-KIYKE----LVWIIPILVAMSTFGGVN 79 (220)
Q Consensus 5 E~k~p~~~~p~ai~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~----~~~~~~~~~~~~~~~~~~ 79 (220)
..|||+ +..|....+...++++|.+.........++++..+..-|.....+ ...|. ...++...-+.+.+....
T Consensus 200 ~~~~~~-~~~k~~~~~~~~~~~~~~~~~~~~i~vfG~~~~~~~~~P~~~~~~~i~i~~fieRld~~~i~~w~~~~~~~~~ 278 (320)
T PF03845_consen 200 FVKDKK-KLKKSLLIAILISGLFLLFIIFITIGVFGPELAKKLTYPVLELARSIEIGDFIERLDSIFILIWIIGIFIKIS 278 (320)
T ss_pred HcCCch-HHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHhceecHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456754 568999999999999999999999999998887765433333333 22332 234455555566666777
Q ss_pred HHHhhhhHHHHH
Q psy9205 80 GILFTSARLFLT 91 (220)
Q Consensus 80 ~~~~~~sR~l~~ 91 (220)
..++..++.+..
T Consensus 279 ~~~~~~~~~~~~ 290 (320)
T PF03845_consen 279 LYLYAASEGLSQ 290 (320)
T ss_pred HHHHHHHHHHHH
Confidence 777777776543
No 85
>COG4025 Predicted membrane protein [Function unknown]
Probab=66.32 E-value=62 Score=25.42 Aligned_cols=17 Identities=12% Similarity=0.196 Sum_probs=14.2
Q ss_pred hhhhHHHHHhhccCCCc
Q psy9205 83 FTSARLFLTGSQEGHLP 99 (220)
Q Consensus 83 ~~~sR~l~~~a~dg~lP 99 (220)
.+.-|-..++.||+++|
T Consensus 54 ~~~ve~v~e~~re~~i~ 70 (284)
T COG4025 54 ASKVEKVMEKVREFQIP 70 (284)
T ss_pred HHHHHHHHHHHhcCCCc
Confidence 55678889999999986
No 86
>PRK10484 putative transporter; Provisional
Probab=60.84 E-value=1.2e+02 Score=26.83 Aligned_cols=78 Identities=13% Similarity=0.100 Sum_probs=35.4
Q ss_pred ccChhHHHHHHHHHHHHHHHHH---HHHHHhccChhhhccchhHHHHHHHHhccc-hhHHHHHHHHHHHHHHHHHHHhhh
Q psy9205 10 TLNLPRAIWIAMPIVTLVYVCA---NVAYFTVLTKEEMLTSPAVAVTFGGKIYKE-LVWIIPILVAMSTFGGVNGILFTS 85 (220)
Q Consensus 10 ~~~~p~ai~~~~~~~~~~y~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~ 85 (220)
+|+..|+...+.....+.+... .+......|.+ +.+.+.....+..+..|+ ..-++..+++.+..++..+.+.+.
T Consensus 273 ~k~a~~~~~~~~~~~~~~~~~~~~~G~~a~~~~p~~-~~~~d~~~p~~~~~~lp~~l~Gl~~a~ilAA~mST~~s~l~s~ 351 (523)
T PRK10484 273 LAEGQKGALLAAFFKLLGPLILVLPGIIAFHLYGDG-LPNADMAYPTLVNDVLPVPLVGFFAAVLFGAILSTFNGFLNSA 351 (523)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-cCChhhHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556677666654433332221 11222222321 222222222233344444 445566666666666666666666
Q ss_pred hHH
Q psy9205 86 ARL 88 (220)
Q Consensus 86 sR~ 88 (220)
|-.
T Consensus 352 st~ 354 (523)
T PRK10484 352 STL 354 (523)
T ss_pred HHH
Confidence 543
No 87
>PF00474 SSF: Sodium:solute symporter family; InterPro: IPR001734 Sodium/substrate symport (or co-transport) is a widespread mechanism of solute transport across cytoplasmic membranes of pro- and eukaryotic cells. Thereby the energy stored in an inwardly directed electrochemical sodium gradient (sodium motive force, SMF) is used to drive solute accumulation against a concentration gradient. The SMF is generated by primary sodium pumps (e.g. sodium/potassium ATPases, sodium translocating respiratory chain complexes) or via the action of sodium/proton antiporters. Sodium/substrate transporters are grouped in different families based on sequence similarities [, ]. One of these families, known as the sodium:solute symporter family (SSSF), contains over a hundred members of pro- and eukaryotic origin []. The average hydropathy plot for SSSF proteins predicts 11 to 15 putative transmembrane domains (TMs) in alpha-helical conformation. A secondary structure model of PutP from Escherichia coli suggests the protein contains 13 TMs with the N terminus located on the periplasmic side of the membrane and the C terminus facing the cytoplasm. The results support the idea of a common topological motif for members of the SSSF. Transporters with a C-terminal extension are proposed to have an additional 14th TM. An ordered binding model of sodium/substrate transport suggests that sodium binds to the empty transporter first, thereby inducing a conformational alteration which increases the affinity of the transporter for the solute. The formation of the ternary complex induces another structural change that exposes sodium and substrate to the other site of the membrane. Substrate and sodium are released and the empty transporter re-orientates in the membrane allowing the cycle to start again.; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3DH4_D 2XQ2_A.
Probab=60.14 E-value=1.1e+02 Score=25.95 Aligned_cols=41 Identities=7% Similarity=0.088 Sum_probs=24.5
Q ss_pred HHHHHhccc-hhHHHHHHHHHHHHHHHHHHHhhhhHHHHHhhccC
Q psy9205 53 TFGGKIYKE-LVWIIPILVAMSTFGGVNGILFTSARLFLTGSQEG 96 (220)
Q Consensus 53 ~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~dg 96 (220)
.+..+..|+ ..-++..+++.+..++..+.+.+.+-. ++||=
T Consensus 283 ~~~~~~~p~~~~gl~~~~~~aA~~ST~~s~l~a~ss~---~~~Di 324 (406)
T PF00474_consen 283 YLAAQYLPPGLAGLFLAGILAAIMSTADSLLLAISSI---FSRDI 324 (406)
T ss_dssp HHHT-TS-TTHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHC
T ss_pred hhhhhhccchhHHHHHHHHHHhhhHHHHHHHhhhhhh---hhHHh
Confidence 344444444 455666666777788888877777764 45553
No 88
>PF12794 MscS_TM: Mechanosensitive ion channel inner membrane domain 1
Probab=58.94 E-value=1.1e+02 Score=25.58 Aligned_cols=30 Identities=10% Similarity=0.125 Sum_probs=20.8
Q ss_pred cccccccccC----hhHHHHHHHHHHHHHHHHHH
Q psy9205 3 KEQGFQITLN----LPRAIWIAMPIVTLVYVCAN 32 (220)
Q Consensus 3 a~E~k~p~~~----~p~ai~~~~~~~~~~y~~~~ 32 (220)
++++.++++| -|+|+.++++.+.-.-++..
T Consensus 32 ~~~ig~~~~D~~~~T~~al~~tll~alp~pl~~~ 65 (340)
T PF12794_consen 32 AKRIGKVRQDSFSHTPRALLLTLLLALPLPLLLL 65 (340)
T ss_pred HHHcCCccCCCchhhHHHHHHHHHHHHHHHHHHH
Confidence 4566666655 99999999988776544433
No 89
>PRK11017 codB cytosine permease; Provisional
Probab=58.89 E-value=1.1e+02 Score=25.96 Aligned_cols=23 Identities=13% Similarity=0.200 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHh
Q psy9205 70 VAMSTFGGVNGILFTSARLFLTG 92 (220)
Q Consensus 70 ~~~~~~~~~~~~~~~~sR~l~~~ 92 (220)
..++..++....+++++=.+..+
T Consensus 264 ~~l~~~t~n~~~~ys~~l~~~~l 286 (404)
T PRK11017 264 LGLNIWTTNDNALYASGLGFCNI 286 (404)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHH
Confidence 33444433344444554444444
No 90
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=52.83 E-value=17 Score=29.18 Aligned_cols=13 Identities=15% Similarity=0.294 Sum_probs=6.1
Q ss_pred hhehhhhccchhh
Q psy9205 202 YVCVKWKSKPALL 214 (220)
Q Consensus 202 ~~~~~~~~~~~~~ 214 (220)
++|.++|||..|+
T Consensus 279 YiWlyrrRK~swk 291 (295)
T TIGR01478 279 YIWLYRRRKKSWK 291 (295)
T ss_pred HHHHHHhhccccc
Confidence 3334555555454
No 91
>PF14316 DUF4381: Domain of unknown function (DUF4381)
Probab=44.71 E-value=25 Score=25.21 Aligned_cols=12 Identities=8% Similarity=0.606 Sum_probs=4.6
Q ss_pred hhhhhhehhhhc
Q psy9205 198 VPVYYVCVKWKS 209 (220)
Q Consensus 198 ~~~~~~~~~~~~ 209 (220)
..+|+.++++++
T Consensus 36 ~~~~~~~r~~~~ 47 (146)
T PF14316_consen 36 LLLWRLWRRWRR 47 (146)
T ss_pred HHHHHHHHHHHc
Confidence 333443333333
No 92
>KOG4753|consensus
Probab=44.35 E-value=27 Score=24.13 Aligned_cols=28 Identities=7% Similarity=-0.064 Sum_probs=21.0
Q ss_pred cccccccccChhHHHHHHHHHHHHHHHH
Q psy9205 3 KEQGFQITLNLPRAIWIAMPIVTLVYVC 30 (220)
Q Consensus 3 a~E~k~p~~~~p~ai~~~~~~~~~~y~~ 30 (220)
.+|+|.|.|.+-++..+....+.++.+.
T Consensus 41 ~s~tr~P~k~i~lavvL~~fg~Lli~lg 68 (124)
T KOG4753|consen 41 VSNTRHPVKEIALAVVLLVFGLLLIGLG 68 (124)
T ss_pred cCCCCCchHHHHHHHHHHHHHHHHHHHH
Confidence 5788999999988888777766555443
No 93
>COG4858 Uncharacterized membrane-bound protein conserved in bacteria [Function unknown]
Probab=43.74 E-value=1.4e+02 Score=22.62 Aligned_cols=18 Identities=17% Similarity=0.154 Sum_probs=8.4
Q ss_pred HHHhhhccCCCCCCCccc
Q psy9205 143 GLISLRFTQPDLHRPIKV 160 (220)
Q Consensus 143 ~~~~~r~~~~~~~~~~~~ 160 (220)
.++..|.+..+..||..+
T Consensus 145 y~y~yr~~ad~sqr~~~~ 162 (226)
T COG4858 145 YYYAYRMRADNSQRPGTW 162 (226)
T ss_pred HHHHHHhhcccccCCchH
Confidence 344445554444455433
No 94
>PF07301 DUF1453: Protein of unknown function (DUF1453); InterPro: IPR009916 This family consists of several hypothetical bacterial proteins of around 150 residues in length. The function of this family is unknown. Members of this family seem to be found exclusively in the Order Bacillales.
Probab=43.52 E-value=1.1e+02 Score=22.29 Aligned_cols=30 Identities=30% Similarity=0.627 Sum_probs=16.6
Q ss_pred CCcccch-HHHHHHHHHHHHHHHhhcccCch
Q psy9205 156 RPIKVHL-SLPIIFLACCIFLVVVPTIREPM 185 (220)
Q Consensus 156 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 185 (220)
+|.+... .+|.++.......+..|....++
T Consensus 27 rP~~~kkIIlPplfmstG~lmf~~P~~~~~~ 57 (148)
T PF07301_consen 27 RPVNGKKIILPPLFMSTGFLMFVFPFFRPPW 57 (148)
T ss_pred CCCCcchHHHhHHHHHHHHHHHhCccccchH
Confidence 5544333 67777766666666655444443
No 95
>TIGR02119 panF sodium/pantothenate symporter. Pantothenate (vitamin B5) is a precursor of coenzyme A and is made from aspartate and 2-oxoisovalerate in most bacteria with completed genome sequences. However, some pathogens must import pantothenate. This model describes PanF, a sodium/pantothenate symporter, from a larger family of Sodium/substrate symporters (pfam00474). Several species that have this transporter appear to lack all enzymes of pantothenate biosynthesis, namely Haemophilus influenzae, Pasteurella multocida, Fusobacterium nucleatum, and Borrelia burgdorferi.
Probab=42.86 E-value=2.2e+02 Score=24.64 Aligned_cols=81 Identities=15% Similarity=0.142 Sum_probs=39.6
Q ss_pred ccccccChhHHHHHHHHHHHHHHHHHHHHH-HhccChhhhcc-chhHHHHHHHHhccc-hhHHHHHHHHHHHHHHHHHHH
Q psy9205 6 GFQITLNLPRAIWIAMPIVTLVYVCANVAY-FTVLTKEEMLT-SPAVAVTFGGKIYKE-LVWIIPILVAMSTFGGVNGIL 82 (220)
Q Consensus 6 ~k~p~~~~p~ai~~~~~~~~~~y~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~ 82 (220)
.|| +|+..|+..++......++......- ....-.+++.+ +....... .+..|+ ..-++..+++.+..++..+.+
T Consensus 262 ak~-~~~a~~~~~~~~~~~~~~~~~~~~~G~~a~~~~p~~~~~d~~~p~~~-~~~lp~~~~gl~~a~llaA~mST~~s~l 339 (471)
T TIGR02119 262 YKD-SKAMHRAMIIGTIVVGIIMLGMHLAGVLGRAVIPDLTVPDKVIPLLA-IKVLPPILAGIFLAAPMAAIMSTVNSLL 339 (471)
T ss_pred cCC-HHHHhhhHhHHHHHHHHHHHHHHHHHHhhhhhccCCCCccchHHHHH-HHHchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344 46777888877665555544332221 11100112222 22233322 334443 455666666666677776666
Q ss_pred hhhhHH
Q psy9205 83 FTSARL 88 (220)
Q Consensus 83 ~~~sR~ 88 (220)
.+.+-.
T Consensus 340 ~~~ss~ 345 (471)
T TIGR02119 340 LQSSST 345 (471)
T ss_pred HHHHHH
Confidence 666543
No 96
>COG4145 PanF Na+/panthothenate symporter [Coenzyme metabolism]
Probab=42.64 E-value=1.6e+02 Score=25.28 Aligned_cols=80 Identities=13% Similarity=0.135 Sum_probs=43.7
Q ss_pred cccccChhHHHHHHHHHHHHHHHHHHHHH-HhccChhhhccchhHHHHHHHHhccch-hHHHHHHHHHHHHHHHHHHHhh
Q psy9205 7 FQITLNLPRAIWIAMPIVTLVYVCANVAY-FTVLTKEEMLTSPAVAVTFGGKIYKEL-VWIIPILVAMSTFGGVNGILFT 84 (220)
Q Consensus 7 k~p~~~~p~ai~~~~~~~~~~y~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~ 84 (220)
|| +|.+.++|+++..+.+++-+++-.+- .+-.--+++...+.....++-+.+++. ..++..+.+-+.-++.++.+.-
T Consensus 262 kD-skaih~gmiigt~vi~il~~gmhl~G~~graViPdlt~~D~Vip~lalkvlpp~~agifl~apmaAiMSTIds~L~~ 340 (473)
T COG4145 262 KD-SKAIHRGMIIGTIVIAILMLGMHLAGALGRAVIPDLTVVDLVIPTLALKVLPPFAAGIFLAAPMAAIMSTINSQLLQ 340 (473)
T ss_pred cc-hhHHhcCcchHHHHHHHHHHHHHHhhhhhhhhcCCCCccchhHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44 67889999999998888766543321 111111233333334444555666664 3444445555556666665544
Q ss_pred hhH
Q psy9205 85 SAR 87 (220)
Q Consensus 85 ~sR 87 (220)
.|-
T Consensus 341 ~ss 343 (473)
T COG4145 341 SSS 343 (473)
T ss_pred HHH
Confidence 443
No 97
>PF07226 DUF1422: Protein of unknown function (DUF1422); InterPro: IPR009867 This family consists of several hypothetical bacterial proteins of around 120 residues in length. The function of this family is unknown.
Probab=42.55 E-value=1.1e+02 Score=21.08 Aligned_cols=18 Identities=6% Similarity=-0.280 Sum_probs=8.2
Q ss_pred HHHHHHHhhhhhhhehhh
Q psy9205 190 SLFIIASGVPVYYVCVKW 207 (220)
Q Consensus 190 ~~~~~~~g~~~~~~~~~~ 207 (220)
.-.++.+..++|..++.+
T Consensus 95 fp~il~l~L~~Wi~~kl~ 112 (117)
T PF07226_consen 95 FPSILCLILVFWIGYKLG 112 (117)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 334444555555544433
No 98
>PRK11056 hypothetical protein; Provisional
Probab=42.12 E-value=1.2e+02 Score=21.12 Aligned_cols=9 Identities=11% Similarity=0.198 Sum_probs=4.9
Q ss_pred hHHHHHHHH
Q psy9205 109 ICLMSVLML 117 (220)
Q Consensus 109 ~~~~~~~~~ 117 (220)
+.+++.+..
T Consensus 11 tLlLaliaG 19 (120)
T PRK11056 11 TLLLALIAG 19 (120)
T ss_pred hHHHHHHHH
Confidence 555555544
No 99
>PTZ00206 amino acid transporter; Provisional
Probab=40.73 E-value=2.5e+02 Score=24.50 Aligned_cols=53 Identities=6% Similarity=0.111 Sum_probs=39.2
Q ss_pred HHHHHHHhccch-hHHHHHHHHHHHHHHHHHHHhhhhHHHHHhhccCCCchhhh
Q psy9205 51 AVTFGGKIYKEL-VWIIPILVAMSTFGGVNGILFTSARLFLTGSQEGHLPPLFS 103 (220)
Q Consensus 51 ~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~dg~lP~~f~ 103 (220)
...+.+..+|.. .++..+..++..+++..+++...+..+...-++...|+++.
T Consensus 123 Y~~la~~~~G~~g~~~v~~~~~~~~~G~cv~YlIiigd~l~~~l~~~~~~~~~~ 176 (467)
T PTZ00206 123 YEGVARVLLGPWGSYYVAATRAFHGFSACVAYVISVGDILSATLKGTNAPDFLK 176 (467)
T ss_pred HHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccchhh
Confidence 344556666664 58888999999999999999999988877766544555554
No 100
>TIGR00800 ncs1 NCS1 nucleoside transporter family. The NCS1 family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.
Probab=40.53 E-value=2.4e+02 Score=24.29 Aligned_cols=20 Identities=10% Similarity=-0.021 Sum_probs=10.0
Q ss_pred cChhHHHHHHHHHHHHHHHH
Q psy9205 11 LNLPRAIWIAMPIVTLVYVC 30 (220)
Q Consensus 11 ~~~p~ai~~~~~~~~~~y~~ 30 (220)
|+..++...+.........+
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~ 257 (442)
T TIGR00800 238 KTAIWGQFLALPGGFTLTCF 257 (442)
T ss_pred cchHHHHHHHHHHHHHHHHH
Confidence 44455555555554444333
No 101
>PF14007 YtpI: YtpI-like protein
Probab=39.39 E-value=1.1e+02 Score=20.08 Aligned_cols=23 Identities=4% Similarity=0.260 Sum_probs=13.6
Q ss_pred CchHHHHHHHHHHHhhhhhhheh
Q psy9205 183 EPMNTVISLFIIASGVPVYYVCV 205 (220)
Q Consensus 183 ~~~~~~~~~~~~~~g~~~~~~~~ 205 (220)
+.....++.+.+++|+.-.+...
T Consensus 56 st~~~iV~~ifl~lG~~n~~~G~ 78 (89)
T PF14007_consen 56 STVRLIVGAIFLVLGLFNLFAGI 78 (89)
T ss_pred cHHHHHHHHHHHHHhHHHHHHHH
Confidence 34455666677777776555433
No 102
>PF02468 PsbN: Photosystem II reaction centre N protein (psbN); InterPro: IPR003398 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbN found in PSII. PsbN may have a role in PSII stability, however its actual function unknown. PsbN does not appear to be essential for photoautotrophic growth or normal PSII function.; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane
Probab=39.24 E-value=32 Score=19.16 Aligned_cols=33 Identities=15% Similarity=0.206 Sum_probs=19.5
Q ss_pred HHHHHHHHHhhhhhhhehhhh-ccchhhhhhhcC
Q psy9205 188 VISLFIIASGVPVYYVCVKWK-SKPALLLEMHEH 220 (220)
Q Consensus 188 ~~~~~~~~~g~~~~~~~~~~~-~~~~~~~~~~~~ 220 (220)
.+.+..+++++..|-.|.... ..++..++++||
T Consensus 8 ~i~i~~~lv~~Tgy~iYtaFGppSk~LrDPfeeH 41 (43)
T PF02468_consen 8 AIFISCLLVSITGYAIYTAFGPPSKELRDPFEEH 41 (43)
T ss_pred HHHHHHHHHHHHhhhhhheeCCCccccCCccccc
Confidence 345555666666665555443 345677777776
No 103
>PF04246 RseC_MucC: Positive regulator of sigma(E), RseC/MucC; InterPro: IPR007359 This bacterial family of integral membrane proteins represents a positive regulator of the sigma(E) transcription factor, namely RseC/MucC. The sigma(E) transcription factor is up-regulated by cell envelope protein misfolding, and regulates the expression of genes that are collectively termed ECF (devoted to Extra-Cellular Functions) []. In Pseudomonas aeruginosa, derepression of sigma(E) is associated with the alginate-overproducing phenotype characteristic of chronic respiratory tract colonization in cystic fibrosis patients. The mechanism by which RseC/MucC positively regulates the sigma(E) transcription factor is unknown. RseC is also thought to have a role in thiamine biosynthesis in Salmonella typhimurium []. In addition, this family also includes an N-terminal part of RnfF, a Rhodobacter capsulatus protein, of unknown function, that is essential for nitrogen fixation. This protein also contains a domain found in ApbE protein IPR003374 from INTERPRO, which is itself involved in thiamine biosynthesis.
Probab=39.00 E-value=57 Score=22.95 Aligned_cols=14 Identities=29% Similarity=0.347 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHH
Q psy9205 163 SLPIIFLACCIFLV 176 (220)
Q Consensus 163 ~~~~~~~~~~~~~~ 176 (220)
.+|.+.++...++-
T Consensus 76 ~lPll~li~g~~l~ 89 (135)
T PF04246_consen 76 LLPLLALIAGAVLG 89 (135)
T ss_pred HHHHHHHHHHHHHH
Confidence 45555555544444
No 104
>PF11998 DUF3493: Protein of unknown function (DUF3493); InterPro: IPR021883 This family of proteins is functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 79 to 331 amino acids in length.
Probab=38.76 E-value=40 Score=21.36 Aligned_cols=31 Identities=10% Similarity=-0.090 Sum_probs=26.0
Q ss_pred ccccccccChhHHHHHHHHHHHHHHHHHHHH
Q psy9205 4 EQGFQITLNLPRAIWIAMPIVTLVYVCANVA 34 (220)
Q Consensus 4 ~E~k~p~~~~p~ai~~~~~~~~~~y~~~~~~ 34 (220)
+|++.|=|.+.+-...+....+.+..++...
T Consensus 11 aE~~aPfR~lR~f~y~a~~aSa~iG~~i~~~ 41 (75)
T PF11998_consen 11 AEAQAPFRGLRRFFYGAFGASAGIGLFIFLF 41 (75)
T ss_pred HHHHCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6999999999999999999888877665543
No 105
>PF08114 PMP1_2: ATPase proteolipid family; InterPro: IPR012589 This family consists of small proteolipids associated with the plasma membrane H+ ATPase. Two proteolipids (PMP1 and PMP2) are associated with the ATPase and both genes are similarly expressed in the wild-type strain of yeast. No modification of the level of transcription of one PMP gene is detected in a strain deleted of the other. Though both proteolipids show similarity with other small proteolipids associated with other cation -transporting ATPases, their functions remain unclear [].
Probab=38.37 E-value=30 Score=18.96 Aligned_cols=22 Identities=18% Similarity=0.579 Sum_probs=12.1
Q ss_pred HHHhhhhhhhehhhhccchhhh
Q psy9205 194 IASGVPVYYVCVKWKSKPALLL 215 (220)
Q Consensus 194 ~~~g~~~~~~~~~~~~~~~~~~ 215 (220)
..++++..+.|++|..|++..+
T Consensus 20 v~i~iva~~iYRKw~aRkr~l~ 41 (43)
T PF08114_consen 20 VGIGIVALFIYRKWQARKRALQ 41 (43)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 4445555566666665555444
No 106
>COG0053 MMT1 Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]
Probab=37.67 E-value=2.3e+02 Score=23.21 Aligned_cols=20 Identities=15% Similarity=0.082 Sum_probs=13.3
Q ss_pred HHHhhhccCCCCCCCcccch
Q psy9205 143 GLISLRFTQPDLHRPIKVHL 162 (220)
Q Consensus 143 ~~~~~r~~~~~~~~~~~~~~ 162 (220)
-.++..+++||.+.||-...
T Consensus 60 ~~l~~s~kp~d~~HpyGh~k 79 (304)
T COG0053 60 IGLRISSKPPDRDHPYGHGK 79 (304)
T ss_pred HHHHHhcCCCCCCCCCCchh
Confidence 33455567778778887765
No 107
>PHA03164 hypothetical protein; Provisional
Probab=37.17 E-value=30 Score=21.80 Aligned_cols=32 Identities=3% Similarity=0.022 Sum_probs=23.1
Q ss_pred ccccccccccChhHHHHHHHHHHHHHHHHHHH
Q psy9205 2 SKEQGFQITLNLPRAIWIAMPIVTLVYVCANV 33 (220)
Q Consensus 2 ~a~E~k~p~~~~p~ai~~~~~~~~~~y~~~~~ 33 (220)
+..|-+|-+|+...-+..++++..++++...+
T Consensus 47 awnlwnnrRktftFlvLtgLaIamILfiifvl 78 (88)
T PHA03164 47 AWNLWNNRRKTFTFLVLTGLAIAMILFIIFVL 78 (88)
T ss_pred hHHHHHhhhheeehHHHHHHHHHHHHHHHHHH
Confidence 45677888888887777777777777665443
No 108
>COG1346 LrgB Putative effector of murein hydrolase [Cell envelope biogenesis, outer membrane]
Probab=36.54 E-value=94 Score=24.32 Aligned_cols=17 Identities=29% Similarity=0.467 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHhhhhhh
Q psy9205 186 NTVISLFIIASGVPVYY 202 (220)
Q Consensus 186 ~~~~~~~~~~~g~~~~~ 202 (220)
....+...++++++.|-
T Consensus 65 ~~lLgPAtVAlAvPLYk 81 (230)
T COG1346 65 NFLLGPATVALAVPLYK 81 (230)
T ss_pred HHHHHHHHHHHhhHHHH
Confidence 45566677888888775
No 109
>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]. This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].
Probab=36.41 E-value=28 Score=19.11 Aligned_cols=9 Identities=22% Similarity=0.626 Sum_probs=3.5
Q ss_pred HHHhhhhhh
Q psy9205 194 IASGVPVYY 202 (220)
Q Consensus 194 ~~~g~~~~~ 202 (220)
++++..+|+
T Consensus 26 ~vl~~~l~~ 34 (40)
T PF08693_consen 26 IVLGAFLFF 34 (40)
T ss_pred HHHHHHhhe
Confidence 333333343
No 110
>PF11143 DUF2919: Protein of unknown function (DUF2919); InterPro: IPR021318 This bacterial family of proteins has no known function. Some members are annotated as YfeZ however this cannot be confirmed.
Probab=35.85 E-value=1.7e+02 Score=21.22 Aligned_cols=33 Identities=9% Similarity=0.050 Sum_probs=18.9
Q ss_pred chHHHHHHHHHHHhhhhhhhehhhhccchhhhh
Q psy9205 184 PMNTVISLFIIASGVPVYYVCVKWKSKPALLLE 216 (220)
Q Consensus 184 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 216 (220)
....+.+.+.-+-++..++...++++.|++.++
T Consensus 53 ~~~f~lgL~~g~Pall~~~l~~~R~~~~~~~~~ 85 (149)
T PF11143_consen 53 HSDFYLGLAAGLPALLLMLLSGRRHRSPRWLNR 85 (149)
T ss_pred chHHHHHHHHhHHHHHHHHHHccCCCCchHHHH
Confidence 344555555544445555666677777776554
No 111
>PRK13108 prolipoprotein diacylglyceryl transferase; Reviewed
Probab=34.19 E-value=2.7e+02 Score=24.46 Aligned_cols=21 Identities=24% Similarity=0.314 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHhhhhhhhehh
Q psy9205 186 NTVISLFIIASGVPVYYVCVK 206 (220)
Q Consensus 186 ~~~~~~~~~~~g~~~~~~~~~ 206 (220)
..++++.++++|+++++..+|
T Consensus 257 ~Q~lSl~~il~gl~~~~~~~~ 277 (460)
T PRK13108 257 NSFTSTFVFIGAVVYIILAPK 277 (460)
T ss_pred HHHHHHHHHHHHHHHHHHhhc
Confidence 346677777777755544333
No 112
>PRK09928 choline transport protein BetT; Provisional
Probab=34.04 E-value=3.9e+02 Score=24.81 Aligned_cols=87 Identities=13% Similarity=0.007 Sum_probs=49.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhhHHHHHhhccCCC----chhhhhhchh--hHHHHHHHHhhh---cHHHHHHHHHHH
Q psy9205 62 LVWIIPILVAMSTFGGVNGILFTSARLFLTGSQEGHL----PPLFSYIHIK--ICLMSVLMLVTS---DVFALINYMSVA 132 (220)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~dg~l----P~~f~~~~~~--~~~~~~~~~~~~---~~~~l~~~~~~~ 132 (220)
.+.+..++.++..+....+..-+.+-++-.++..|.- |+.+.|+-=- .++++..+...+ ...+..-+.++.
T Consensus 407 ~~~i~~~l~~il~~iFfvTSaDS~s~Vla~lts~g~~~~~~pp~~~RifW~v~ig~la~~LL~~GGL~aLQt~sii~alP 486 (679)
T PRK09928 407 AFTFSASVATITGLLFYVTSADSGALVLGNFTSKLKDINSDAPNWLRVFWSVAIGLLTLGMLMTNGISALQNTTVIMGLP 486 (679)
T ss_pred HHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHcCCCCCCCCCCcceeeHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 3455555555555666667777888888888887653 3222111000 344444444443 344555666666
Q ss_pred HHHHHHHHHHHHHhhh
Q psy9205 133 LWLSVGACTAGLISLR 148 (220)
Q Consensus 133 ~~~~~~~~~~~~~~~r 148 (220)
..+..++.+.+.++.-
T Consensus 487 f~~I~ll~~~sl~k~l 502 (679)
T PRK09928 487 FSFVIFFVMAGLYKSL 502 (679)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6666666667766643
No 113
>PRK13183 psbN photosystem II reaction center protein N; Provisional
Probab=33.38 E-value=49 Score=18.71 Aligned_cols=34 Identities=12% Similarity=0.198 Sum_probs=21.0
Q ss_pred HHHHHHHHHHhhhhhhhehhhhc-cchhhhhhhcC
Q psy9205 187 TVISLFIIASGVPVYYVCVKWKS-KPALLLEMHEH 220 (220)
Q Consensus 187 ~~~~~~~~~~g~~~~~~~~~~~~-~~~~~~~~~~~ 220 (220)
..+.+..+++++.-|-.|..... .++..++++||
T Consensus 10 ~~i~i~~lL~~~TgyaiYtaFGppSk~LrDPFeeH 44 (46)
T PRK13183 10 LAITILAILLALTGFGIYTAFGPPSKELDDPFDDH 44 (46)
T ss_pred HHHHHHHHHHHHhhheeeeccCCcccccCCchhhc
Confidence 34555556677767766555443 35677777776
No 114
>PRK09950 putative transporter; Provisional
Probab=31.86 E-value=3.7e+02 Score=23.92 Aligned_cols=89 Identities=10% Similarity=-0.058 Sum_probs=51.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhhHHHHHhhccCCC----chhhhhhchh--hHHHHHHHHhhh----cHHHHHHHHHH
Q psy9205 62 LVWIIPILVAMSTFGGVNGILFTSARLFLTGSQEGHL----PPLFSYIHIK--ICLMSVLMLVTS----DVFALINYMSV 131 (220)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~dg~l----P~~f~~~~~~--~~~~~~~~~~~~----~~~~l~~~~~~ 131 (220)
.+.++.+..++..+....+..-+++.++-.++.+|.= |+...|.-=- .+.++..+...+ ...+..-+.++
T Consensus 400 ~~~i~~~l~~vl~~if~vTs~DS~s~vla~~ts~g~~~~~~P~~~~ri~W~i~~g~ia~~Ll~~gG~l~~lQ~~~ii~al 479 (506)
T PRK09950 400 AGKLFLAAYLGIMIIFLASHMDAVAYTMAATSTRNLREGDDPDRGLRLFWCVVITLIPLSILFTGASLDTMKTTVVLTAL 479 (506)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHcCCCCCCCCCCcchhHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 4556666666666777778888888888888876643 3322111000 334444443333 33445566666
Q ss_pred HHHHHHHHHHHHHHhhhcc
Q psy9205 132 ALWLSVGACTAGLISLRFT 150 (220)
Q Consensus 132 ~~~~~~~~~~~~~~~~r~~ 150 (220)
...+...+.+.+.++.-|+
T Consensus 480 P~~~i~~l~~~s~~k~l~~ 498 (506)
T PRK09950 480 PFLVILLIKVYGFIRWLKQ 498 (506)
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 6666666666666665443
No 115
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=31.45 E-value=34 Score=27.97 Aligned_cols=15 Identities=13% Similarity=0.155 Sum_probs=8.9
Q ss_pred HHHhhhhhhhehhhh
Q psy9205 194 IASGVPVYYVCVKWK 208 (220)
Q Consensus 194 ~~~g~~~~~~~~~~~ 208 (220)
+++.+++|+++++||
T Consensus 269 VLIMvIIYLILRYRR 283 (299)
T PF02009_consen 269 VLIMVIIYLILRYRR 283 (299)
T ss_pred HHHHHHHHHHHHHHH
Confidence 455556676666555
No 116
>PTZ00046 rifin; Provisional
Probab=30.99 E-value=48 Score=27.79 Aligned_cols=16 Identities=13% Similarity=0.148 Sum_probs=8.6
Q ss_pred HHHhhhhhhhehhhhc
Q psy9205 194 IASGVPVYYVCVKWKS 209 (220)
Q Consensus 194 ~~~g~~~~~~~~~~~~ 209 (220)
+++.+++|++.|+||+
T Consensus 328 VLIMvIIYLILRYRRK 343 (358)
T PTZ00046 328 VLIMVIIYLILRYRRK 343 (358)
T ss_pred HHHHHHHHHHHHhhhc
Confidence 4455566666554444
No 117
>PF15099 PIRT: Phosphoinositide-interacting protein family
Probab=30.34 E-value=31 Score=24.14 Aligned_cols=27 Identities=15% Similarity=0.183 Sum_probs=15.6
Q ss_pred HHHHHHHHhhhhhhhehhhhccchhhh
Q psy9205 189 ISLFIIASGVPVYYVCVKWKSKPALLL 215 (220)
Q Consensus 189 ~~~~~~~~g~~~~~~~~~~~~~~~~~~ 215 (220)
.++.+++.+.++|....++|++++.+.
T Consensus 90 ~GLmlL~~~alcW~~~~rkK~~kr~eS 116 (129)
T PF15099_consen 90 LGLMLLACSALCWKPIIRKKKKKRRES 116 (129)
T ss_pred HHHHHHHhhhheehhhhHhHHHHhhhh
Confidence 344456677677776555555544443
No 118
>TIGR01477 RIFIN variant surface antigen, rifin family. This model represents the rifin branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of rifin sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 20 bits.
Probab=30.28 E-value=50 Score=27.61 Aligned_cols=16 Identities=13% Similarity=0.148 Sum_probs=8.6
Q ss_pred HHHhhhhhhhehhhhc
Q psy9205 194 IASGVPVYYVCVKWKS 209 (220)
Q Consensus 194 ~~~g~~~~~~~~~~~~ 209 (220)
+++.+++|++.++||+
T Consensus 323 VLIMvIIYLILRYRRK 338 (353)
T TIGR01477 323 VLIMVIIYLILRYRRK 338 (353)
T ss_pred HHHHHHHHHHHHhhhc
Confidence 4445556666554444
No 119
>PRK03356 L-carnitine/gamma-butyrobetaine antiporter; Provisional
Probab=28.92 E-value=4.2e+02 Score=23.60 Aligned_cols=88 Identities=13% Similarity=0.066 Sum_probs=49.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhhHHHHHhhccCC----Cchhhhhhchh--hHHHHHHHHhhhc---HHHHHHHHHHH
Q psy9205 62 LVWIIPILVAMSTFGGVNGILFTSARLFLTGSQEGH----LPPLFSYIHIK--ICLMSVLMLVTSD---VFALINYMSVA 132 (220)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~dg~----lP~~f~~~~~~--~~~~~~~~~~~~~---~~~l~~~~~~~ 132 (220)
.+.+..+..++..+....+..-+.+..+-.++.+|. =|+...|.-=- .+.++..+...+. ..+...+.++.
T Consensus 403 l~~i~~~l~~il~~if~vTsaDS~t~vla~~ts~g~~~~~~p~~~~ri~W~v~ig~ia~~Ll~~GGl~~lQt~sii~alP 482 (504)
T PRK03356 403 LSTATMWGFFILCFIATVTLINACSYTLAMSTCREVRDGEEPPLLVRIGWSILVGIIGIVLLALGGLKPIQTAIIAGGCP 482 (504)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHcCCCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 345556666666666777778888888888888764 23311110000 3344444444333 44455566666
Q ss_pred HHHHHHHHHHHHHhhhc
Q psy9205 133 LWLSVGACTAGLISLRF 149 (220)
Q Consensus 133 ~~~~~~~~~~~~~~~r~ 149 (220)
..+...+.+.+.++.-+
T Consensus 483 f~~i~~l~~~sl~k~l~ 499 (504)
T PRK03356 483 LFFVNIMVTLSFIKDAK 499 (504)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 66666666666666444
No 120
>COG5547 Small integral membrane protein [Function unknown]
Probab=28.42 E-value=1.4e+02 Score=17.84 Aligned_cols=19 Identities=16% Similarity=0.186 Sum_probs=9.8
Q ss_pred cccchHHHHHHHHHHHHHH
Q psy9205 158 IKVHLSLPIIFLACCIFLV 176 (220)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~ 176 (220)
||.|.+...++....+..+
T Consensus 7 fkypIIgglvglliAili~ 25 (62)
T COG5547 7 FKYPIIGGLVGLLIAILIL 25 (62)
T ss_pred hccchHHHHHHHHHHHHHH
Confidence 5566655555554444444
No 121
>PRK10862 SoxR reducing system protein RseC; Provisional
Probab=28.37 E-value=1.5e+02 Score=21.51 Aligned_cols=12 Identities=17% Similarity=0.022 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHH
Q psy9205 163 SLPIIFLACCIF 174 (220)
Q Consensus 163 ~~~~~~~~~~~~ 174 (220)
.+|.++++....
T Consensus 83 llPLl~li~ga~ 94 (154)
T PRK10862 83 MTPLVGLFLGAA 94 (154)
T ss_pred HHHHHHHHHHHH
Confidence 355555544433
No 122
>CHL00020 psbN photosystem II protein N
Probab=27.54 E-value=64 Score=17.97 Aligned_cols=33 Identities=15% Similarity=0.124 Sum_probs=19.3
Q ss_pred HHHHHHHHHhhhhhhhehhhhc-cchhhhhhhcC
Q psy9205 188 VISLFIIASGVPVYYVCVKWKS-KPALLLEMHEH 220 (220)
Q Consensus 188 ~~~~~~~~~g~~~~~~~~~~~~-~~~~~~~~~~~ 220 (220)
.+.+..+++++.-|-.|..... .++..++++||
T Consensus 8 ~i~i~~ll~~~Tgy~iYtaFGppSk~LrDPfeeH 41 (43)
T CHL00020 8 AIFISGLLVSFTGYALYTAFGQPSKQLRDPFEEH 41 (43)
T ss_pred HHHHHHHHHHhhheeeeeccCCchhccCCchhhc
Confidence 3445556666666665554433 35567777776
No 123
>COG0591 PutP Na+/proline symporter [Amino acid transport and metabolism / General function prediction only]
Probab=27.10 E-value=4.4e+02 Score=23.23 Aligned_cols=35 Identities=3% Similarity=0.083 Sum_probs=15.6
Q ss_pred HHHHHhccc-hhHHHHHHHHHHHHHHHHHHHhhhhH
Q psy9205 53 TFGGKIYKE-LVWIIPILVAMSTFGGVNGILFTSAR 87 (220)
Q Consensus 53 ~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~sR 87 (220)
.+....+++ ..-++...++.+..++..+.+...|-
T Consensus 316 ~l~~~~~p~~~~g~~~~ailaAvmSt~ss~ll~~ss 351 (493)
T COG0591 316 YLILALFPPWIAGLLLAAILAAVMSTASSQLLVASS 351 (493)
T ss_pred HHHHHHChHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 334444443 44444444444444444444444443
No 124
>PF05545 FixQ: Cbb3-type cytochrome oxidase component FixQ; InterPro: IPR008621 This family consists of several Cbb3-type cytochrome oxidase components (FixQ/CcoQ). FixQ is found in nitrogen fixing bacteria. Since nitrogen fixation is an energy-consuming process, effective symbioses depend on operation of a respiratory chain with a high affinity for O2, closely coupled to ATP production. This requirement is fulfilled by a special three-subunit terminal oxidase (cytochrome terminal oxidase cbb3), which was first identified in Bradyrhizobium japonicum as the product of the fixNOQP operon [].
Probab=26.74 E-value=82 Score=17.78 Aligned_cols=10 Identities=10% Similarity=0.291 Sum_probs=4.8
Q ss_pred HHHhhhhhhh
Q psy9205 194 IASGVPVYYV 203 (220)
Q Consensus 194 ~~~g~~~~~~ 203 (220)
+.+|+++|.+
T Consensus 21 ~F~gi~~w~~ 30 (49)
T PF05545_consen 21 FFIGIVIWAY 30 (49)
T ss_pred HHHHHHHHHH
Confidence 4445544543
No 125
>PF14150 YesK: YesK-like protein
Probab=26.65 E-value=1.8e+02 Score=18.70 Aligned_cols=11 Identities=27% Similarity=0.329 Sum_probs=6.2
Q ss_pred HhhhccCCCCC
Q psy9205 145 ISLRFTQPDLH 155 (220)
Q Consensus 145 ~~~r~~~~~~~ 155 (220)
..+|||.|+.+
T Consensus 17 ~~lr~r~p~k~ 27 (81)
T PF14150_consen 17 VLLRKRFPKKQ 27 (81)
T ss_pred HHHHHhCCCcc
Confidence 45566666543
No 126
>PRK15419 proline:sodium symporter PutP; Provisional
Probab=25.78 E-value=4.6e+02 Score=23.05 Aligned_cols=32 Identities=6% Similarity=0.153 Sum_probs=20.1
Q ss_pred HHhccc-hhHHHHHHHHHHHHHHHHHHHhhhhH
Q psy9205 56 GKIYKE-LVWIIPILVAMSTFGGVNGILFTSAR 87 (220)
Q Consensus 56 ~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~sR 87 (220)
.+..|+ ..-++..+++.+..++..+.+.+.|=
T Consensus 319 ~~~lp~~l~gl~~a~ilAA~mST~~s~l~a~ss 351 (502)
T PRK15419 319 QILFNPWIAGILLSAILAAVMSTLSCQLLVCSS 351 (502)
T ss_pred HHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344443 45666666677777777777777664
No 127
>TIGR02587 putative integral membrane protein TIGR02587. Members of this family are found in Nostoc sp. PCC 7120, Agrobacterium tumefaciens, Sinorhizobium meliloti, and Gloeobacter violaceus in a conserved two-gene neighborhood. This family, as defined, includes some members of COG4711 but is narrower and strictly bacterial. Members appear to span the membrane seven times.
Probab=25.15 E-value=3.7e+02 Score=21.70 Aligned_cols=41 Identities=5% Similarity=-0.134 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCcccch
Q psy9205 122 VFALINYMSVALWLSVGACTAGLISLRFTQPDLHRPIKVHL 162 (220)
Q Consensus 122 ~~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~ 162 (220)
-..+..+...+..++|.++.-+-+.-.+++++..+.|..|.
T Consensus 177 ~~~~~~li~~SL~i~y~iVf~~gF~~q~~~~~~~g~~q~~~ 217 (271)
T TIGR02587 177 PPHIFALILASLVIMHAFVYQLGFRGQHKRRQGKGIFQRFL 217 (271)
T ss_pred hHHHHHHHHHHHHHHHHHhhccccCccccccccCCchhccH
Confidence 34577777888899999887777665544444344556665
No 128
>COG4965 TadB Flp pilus assembly protein TadB [Intracellular trafficking and secretion]
Probab=24.13 E-value=2.2e+02 Score=23.44 Aligned_cols=27 Identities=11% Similarity=0.087 Sum_probs=11.0
Q ss_pred HHHHHhhhhhhhehhhhcc-chhhhhhh
Q psy9205 192 FIIASGVPVYYVCVKWKSK-PALLLEMH 218 (220)
Q Consensus 192 ~~~~~g~~~~~~~~~~~~~-~~~~~~~~ 218 (220)
.....+.+.|+...+++++ ++..+.+.
T Consensus 112 ~~~~~llp~~~~~~~~~rr~krf~~qlP 139 (309)
T COG4965 112 LIGAALLPRLVLRSRRARRLKRFGQQLP 139 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3344444444433333332 44554443
No 129
>PF05961 Chordopox_A13L: Chordopoxvirus A13L protein; InterPro: IPR009236 This family consists of A13L proteins from the Chordopoxviruses. A13L or p8 is one of the three most abundant membrane proteins of the intracellular mature Vaccinia virus [].
Probab=23.85 E-value=80 Score=19.46 Aligned_cols=23 Identities=17% Similarity=0.303 Sum_probs=15.8
Q ss_pred HHHHHHHHHHhhhhhhhehhhhc
Q psy9205 187 TVISLFIIASGVPVYYVCVKWKS 209 (220)
Q Consensus 187 ~~~~~~~~~~g~~~~~~~~~~~~ 209 (220)
.++.+.+.++|+++|-.|.|.+.
T Consensus 6 iLi~ICVaii~lIlY~iYnr~~~ 28 (68)
T PF05961_consen 6 ILIIICVAIIGLILYGIYNRKKT 28 (68)
T ss_pred HHHHHHHHHHHHHHHHHHhcccc
Confidence 34556667788888887766554
No 130
>KOG2784|consensus
Probab=23.02 E-value=58 Score=27.45 Aligned_cols=24 Identities=25% Similarity=0.362 Sum_probs=18.2
Q ss_pred hhhhHHHHHhhccCCCchhhhhhc
Q psy9205 83 FTSARLFLTGSQEGHLPPLFSYIH 106 (220)
Q Consensus 83 ~~~sR~l~~~a~dg~lP~~f~~~~ 106 (220)
..++|+||.+|++|.-|..+-.++
T Consensus 317 avSArmLy~LAk~~f~p~K~FSID 340 (483)
T KOG2784|consen 317 AVSARMLYRLAKKGFKPAKYFSID 340 (483)
T ss_pred HhhHHHHHHHHhCCCCcccccchh
Confidence 457899999999999994433334
No 131
>PRK04288 antiholin-like protein LrgB; Provisional
Probab=22.93 E-value=2.1e+02 Score=22.56 Aligned_cols=17 Identities=24% Similarity=0.372 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHhhhhhh
Q psy9205 186 NTVISLFIIASGVPVYY 202 (220)
Q Consensus 186 ~~~~~~~~~~~g~~~~~ 202 (220)
....+...++++++.|-
T Consensus 68 ~~lLgPAtVALAvPLY~ 84 (232)
T PRK04288 68 SFFLEPATIAFAIPLYK 84 (232)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34566677778777765
No 132
>PHA03049 IMV membrane protein; Provisional
Probab=22.90 E-value=87 Score=19.21 Aligned_cols=21 Identities=19% Similarity=0.349 Sum_probs=14.5
Q ss_pred HHHHHHHHHhhhhhhhehhhh
Q psy9205 188 VISLFIIASGVPVYYVCVKWK 208 (220)
Q Consensus 188 ~~~~~~~~~g~~~~~~~~~~~ 208 (220)
.+.+.+.++|+++|-.|.|.+
T Consensus 7 l~iICVaIi~lIvYgiYnkk~ 27 (68)
T PHA03049 7 LVIICVVIIGLIVYGIYNKKT 27 (68)
T ss_pred HHHHHHHHHHHHHHHHHhccc
Confidence 445566778888888766554
No 133
>PF14715 FixP_N: N-terminal domain of cytochrome oxidase-cbb3, FixP
Probab=22.62 E-value=1.7e+02 Score=16.94 Aligned_cols=18 Identities=17% Similarity=-0.136 Sum_probs=8.9
Q ss_pred ccccccccChhHHHHHHHHHH
Q psy9205 4 EQGFQITLNLPRAIWIAMPIV 24 (220)
Q Consensus 4 ~E~k~p~~~~p~ai~~~~~~~ 24 (220)
+|..|| +||--......+
T Consensus 14 ~E~dnp---lP~ww~~~f~~t 31 (51)
T PF14715_consen 14 RELDNP---LPRWWLWLFYGT 31 (51)
T ss_pred hhhcCC---CCHHHHHHHHHH
Confidence 455554 455554444433
No 134
>PF10112 Halogen_Hydrol: 5-bromo-4-chloroindolyl phosphate hydrolysis protein; InterPro: IPR018770 This entry consists of prokaryotic proteins that mediate the hydrolysis of 5-bromo-4-chloroindolyl phosphate bonds.
Probab=22.37 E-value=2e+02 Score=21.70 Aligned_cols=7 Identities=43% Similarity=0.695 Sum_probs=2.6
Q ss_pred HHHHHHH
Q psy9205 187 TVISLFI 193 (220)
Q Consensus 187 ~~~~~~~ 193 (220)
.++++++
T Consensus 33 ~~l~~l~ 39 (199)
T PF10112_consen 33 FLLSLLI 39 (199)
T ss_pred HHHHHHH
Confidence 3333333
No 135
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]
Probab=22.00 E-value=5.4e+02 Score=22.50 Aligned_cols=32 Identities=13% Similarity=0.292 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHhhhhHHHHHhhccCCCchhhh
Q psy9205 72 MSTFGGVNGILFTSARLFLTGSQEGHLPPLFS 103 (220)
Q Consensus 72 ~~~~~~~~~~~~~~sR~l~~~a~dg~lP~~f~ 103 (220)
++.+++.....++.|..+..+=-|+.=|+.|-
T Consensus 66 lG~i~s~f~i~YG~sKf~~G~~sDr~npr~fm 97 (448)
T COG2271 66 LGILGSAFSITYGVSKFVMGVLSDRSNPRYFM 97 (448)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhcccCCCceee
Confidence 34466777788888998888888887666554
No 136
>PF14654 Epiglycanin_C: Mucin, catalytic, TM and cytoplasmic tail region
Probab=20.94 E-value=2.4e+02 Score=18.85 Aligned_cols=38 Identities=13% Similarity=-0.002 Sum_probs=25.7
Q ss_pred CccccccccccChhHHHHHHHHHHHHHHHHHHHHHHhc
Q psy9205 1 MSKEQGFQITLNLPRAIWIAMPIVTLVYVCANVAYFTV 38 (220)
Q Consensus 1 ~~a~E~k~p~~~~p~ai~~~~~~~~~~y~~~~~~~~~~ 38 (220)
|...|.|-...--|+.+++..+...+.-+.....++..
T Consensus 4 tpvs~~KPsGsL~PWeIfLItLasVvvavGl~aGLfFc 41 (106)
T PF14654_consen 4 TPVSEVKPSGSLKPWEIFLITLASVVVAVGLFAGLFFC 41 (106)
T ss_pred CcccccccCCCccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678887778889999887776666555444444333
No 137
>PRK08568 preprotein translocase subunit SecY; Reviewed
Probab=20.72 E-value=5.8e+02 Score=22.37 Aligned_cols=81 Identities=9% Similarity=0.027 Sum_probs=37.7
Q ss_pred ccccccccChhH--HHHHHHHHHHHHHHHHHHHHHhccChhhhccchhHHHHHHHHhccchhHHHHHHHHHHHHHHHHHH
Q psy9205 4 EQGFQITLNLPR--AIWIAMPIVTLVYVCANVAYFTVLTKEEMLTSPAVAVTFGGKIYKELVWIIPILVAMSTFGGVNGI 81 (220)
Q Consensus 4 ~E~k~p~~~~p~--ai~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 81 (220)
.|+++|+|+.+. =+.++. ...++|.+.+..-.-.++.++ ..+...+..-..|.-..++.+++.=-..++....
T Consensus 15 P~v~~p~~~~~l~~ki~~Tl-~~l~iyrlgs~IPlpGi~~~~----~~~l~~l~~~~gg~~~slf~LGI~PyItAsII~Q 89 (462)
T PRK08568 15 PAVKRPKGHVPFKEKLKWTA-IVLILYFILTNIPLYGISQSS----QDLFELLRIIFAGSFGTLLQLGIGPIVTAGIILQ 89 (462)
T ss_pred CCccCCCcCccHHHHHHHHH-HHHHHHHHHccCcCCCcCccc----ccHHHHHHHHhCCcccchHHhCcHHHHHHHHHHH
Confidence 689999987664 333443 444445544332222222222 1222222222222233555555555555555555
Q ss_pred HhhhhHHH
Q psy9205 82 LFTSARLF 89 (220)
Q Consensus 82 ~~~~sR~l 89 (220)
+.+.+++.
T Consensus 90 LL~~~~l~ 97 (462)
T PRK08568 90 LLVGSKLI 97 (462)
T ss_pred HHhhCchh
Confidence 55555555
No 138
>PF06939 DUF1286: Protein of unknown function (DUF1286); InterPro: IPR009705 This entry is represented by Sulfolobus virus STSV1, Orf8. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several hypothetical archaeal proteins of around 120 residues in length. All members of this family seem to be Sulfolobus species specific. The function of this family is unknown.
Probab=20.32 E-value=1.9e+02 Score=19.82 Aligned_cols=22 Identities=14% Similarity=0.137 Sum_probs=16.2
Q ss_pred cc-cChhHHHHHHHHHHHHHHHH
Q psy9205 9 IT-LNLPRAIWIAMPIVTLVYVC 30 (220)
Q Consensus 9 p~-~~~p~ai~~~~~~~~~~y~~ 30 (220)
|+ .++||++.++.+...-+.++
T Consensus 63 PlTHT~pRSv~WGli~slp~i~~ 85 (114)
T PF06939_consen 63 PLTHTLPRSVLWGLIPSLPLIIL 85 (114)
T ss_pred CCccCcchhhHHHHHHHHHHHHH
Confidence 44 48999999999877754433
No 139
>PF05817 Ribophorin_II: Oligosaccharyltransferase subunit Ribophorin II; InterPro: IPR008814 This family consists of several eukaryotic Ribophorin II (RPN2) proteins. The mammalian oligosaccharyltransferase (OST) is a protein complex that effects the cotranslational N-glycosylation of newly synthesised polypeptides, and is composed of at least four rough ER-specific membrane proteins: ribophorins I and II (RI and RII), OST48, and Dadl. The mechanism(s) by which the subunits of this complex are retained in the ER are not well understood [].; GO: 0004579 dolichyl-diphosphooligosaccharide-protein glycotransferase activity, 0018279 protein N-linked glycosylation via asparagine, 0005789 endoplasmic reticulum membrane, 0008250 oligosaccharyltransferase complex
Probab=20.20 E-value=6.9e+02 Score=23.04 Aligned_cols=22 Identities=9% Similarity=0.030 Sum_probs=14.9
Q ss_pred ccccccChhHHHHHHHHHHHHH
Q psy9205 6 GFQITLNLPRAIWIAMPIVTLV 27 (220)
Q Consensus 6 ~k~p~~~~p~ai~~~~~~~~~~ 27 (220)
.|.|+|..|+.+........+.
T Consensus 538 Fr~~eK~pp~~vS~~F~~~vla 559 (636)
T PF05817_consen 538 FREPEKRPPKIVSLVFTGLVLA 559 (636)
T ss_pred cCCCCCCCchHHHHHHHHHHHH
Confidence 3678888888877666554443
No 140
>COG2456 Uncharacterized conserved protein [Function unknown]
Probab=20.18 E-value=3e+02 Score=18.83 Aligned_cols=25 Identities=20% Similarity=0.347 Sum_probs=12.1
Q ss_pred HHHHHhhhhhhhehhhhccchhhhh
Q psy9205 192 FIIASGVPVYYVCVKWKSKPALLLE 216 (220)
Q Consensus 192 ~~~~~g~~~~~~~~~~~~~~~~~~~ 216 (220)
.++-.+..+|..++-+-.-.+..+.
T Consensus 77 ~vitI~~ayyLlfrlYl~Idkiere 101 (121)
T COG2456 77 FVITIGLAYYLLFRLYLDIDKIERE 101 (121)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555566655544444444433
No 141
>COG3965 Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]
Probab=20.10 E-value=4.8e+02 Score=21.15 Aligned_cols=83 Identities=7% Similarity=0.095 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhhhccC-CCCCCCcccch---------HHHHHHHHHHHHHHHhhccc---------CchHHHHH
Q psy9205 130 SVALWLSVGACTAGLISLRFTQ-PDLHRPIKVHL---------SLPIIFLACCIFLVVVPTIR---------EPMNTVIS 190 (220)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~r~~~-~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~ 190 (220)
++-.++.-.++.+++.+.|.-. .+..+.|..+. +=..+-.+.|++.++....+ +.+...++
T Consensus 52 GvYSl~da~mtllsL~vsrli~~~p~~~RF~~GfwhlEplvL~ing~ll~ll~lyAlinAl~~l~dGGR~v~~~~ai~yt 131 (314)
T COG3965 52 GVYSLIDAGMTLLSLLVSRLIAKDPRDARFPYGFWHLEPLVLAINGTLLALLCLYALINALGSLLDGGREVEPGHAIAYT 131 (314)
T ss_pred cHHHHHHHHHHHHHHHHHHHhccCCCccccCcchhhhhhhHhhhccHHHHHHHHHHHHHHHHHHhcCCccccccHHHHHH
Q ss_pred HHHHHHhhhhhhhehhhhccch
Q psy9205 191 LFIIASGVPVYYVCVKWKSKPA 212 (220)
Q Consensus 191 ~~~~~~g~~~~~~~~~~~~~~~ 212 (220)
......+...|+..+|.+|+-+
T Consensus 132 ~~s~~~Ca~~~~~~~r~nrr~~ 153 (314)
T COG3965 132 LVSVTGCAAIAWKLRRLNRRLK 153 (314)
T ss_pred HHHHHHHHHHHHHHHhhhccCC
No 142
>PF01925 TauE: Sulfite exporter TauE/SafE; InterPro: IPR002781 This family is found in integral membrane proteins of prokaryotes which are uncharacterised.; GO: 0016021 integral to membrane
Probab=20.04 E-value=4e+02 Score=20.30 Aligned_cols=12 Identities=17% Similarity=0.260 Sum_probs=4.6
Q ss_pred HHHHHHHHHHHH
Q psy9205 165 PIIFLACCIFLV 176 (220)
Q Consensus 165 ~~~~~~~~~~~~ 176 (220)
.+.+.....++.
T Consensus 73 ~~~g~~iG~~l~ 84 (240)
T PF01925_consen 73 ALIGVVIGAWLL 84 (240)
T ss_pred hHHHHHHHHhhh
Confidence 344443333333
Done!