Query psy9205
Match_columns 220
No_of_seqs 141 out of 1181
Neff 9.8
Searched_HMMs 13730
Date Fri Aug 16 21:36:09 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9205.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/9205hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2e74g1 f.23.26.1 (G:9-35) Pet 22.2 33 0.0024 14.6 2.2 19 190-208 4-22 (27)
2 d1fftb2 f.17.2.1 (B:27-117) Cy 18.1 13 0.00091 22.0 0.1 17 194-210 31-47 (91)
3 d2q7ra1 f.56.1.1 (A:1-139) Ara 13.9 1.2E+02 0.0087 19.0 4.2 19 134-152 20-38 (139)
4 d1sfua_ a.4.5.19 (A:) 34L {Yab 13.5 20 0.0014 20.0 0.1 14 85-98 41-54 (70)
5 d2uuia1 f.56.1.1 (A:2-147) Leu 13.1 1.6E+02 0.012 18.5 4.8 17 135-151 16-32 (146)
6 d2h8pc1 f.14.1.1 (C:22-78) Pot 9.2 89 0.0064 16.3 1.9 14 11-24 39-52 (57)
7 d3dtub2 f.17.2.1 (B:30-129) Ba 7.5 2.2E+02 0.016 16.3 7.6 11 142-152 49-59 (100)
8 d1rutx4 g.39.1.3 (X:114-146) L 7.4 22 0.0016 16.2 -1.0 18 91-108 3-21 (33)
9 d3ehbb2 f.17.2.1 (B:1-107) Bac 4.9 3.3E+02 0.024 15.7 7.4 10 142-151 55-64 (107)
10 d2ahme1 d.302.1.1 (E:43-197) N 4.7 2.7E+02 0.02 17.5 2.8 26 74-99 46-79 (155)
No 1
>d2e74g1 f.23.26.1 (G:9-35) PetG subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=22.24 E-value=33 Score=14.64 Aligned_cols=19 Identities=21% Similarity=0.296 Sum_probs=9.7
Q ss_pred HHHHHHHhhhhhhhehhhh
Q psy9205 190 SLFIIASGVPVYYVCVKWK 208 (220)
Q Consensus 190 ~~~~~~~g~~~~~~~~~~~ 208 (220)
++++..++..+|-.+...|
T Consensus 4 gli~~tl~glf~aayqqyk 22 (27)
T d2e74g1 4 GLVFATLGGLFYAAYQQYK 22 (27)
T ss_dssp HHHHHHHHHHHHHHHHHTT
T ss_pred eehHHHHHHHHHHHHHHhc
Confidence 4445555555565544443
No 2
>d1fftb2 f.17.2.1 (B:27-117) Cytochrome O ubiquinol oxidase, subunit II {Escherichia coli [TaxId: 562]}
Probab=18.09 E-value=13 Score=21.97 Aligned_cols=17 Identities=18% Similarity=-0.070 Sum_probs=8.9
Q ss_pred HHHhhhhhhhehhhhcc
Q psy9205 194 IASGVPVYYVCVKWKSK 210 (220)
Q Consensus 194 ~~~g~~~~~~~~~~~~~ 210 (220)
.+.+...|..+++|+++
T Consensus 31 ~V~~~~~~~~~ryR~~~ 47 (91)
T d1fftb2 31 PAILMAVGFAWKYRASN 47 (91)
T ss_dssp HHHHHHHTTTTTTTTST
T ss_pred HHHHHHHhhheeeeccC
Confidence 44555566655554443
No 3
>d2q7ra1 f.56.1.1 (A:1-139) Arachidonate 5-lipoxygenase-activating protein, FLAP {Human (Homo sapiens) [TaxId: 9606]}
Probab=13.90 E-value=1.2e+02 Score=18.96 Aligned_cols=19 Identities=16% Similarity=-0.060 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHhhhccCC
Q psy9205 134 WLSVGACTAGLISLRFTQP 152 (220)
Q Consensus 134 ~~~~~~~~~~~~~~r~~~~ 152 (220)
.+.+..-..-..+.|+|++
T Consensus 20 ~~~~~~ls~~Vg~aR~k~~ 38 (139)
T d2q7ra1 20 VVQNGFFAHKVEHESRTQN 38 (139)
T ss_dssp HHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHhCCC
Confidence 3444433444556666553
No 4
>d1sfua_ a.4.5.19 (A:) 34L {Yaba-like disease virus, YLDV [TaxId: 132475]}
Probab=13.52 E-value=20 Score=20.02 Aligned_cols=14 Identities=7% Similarity=0.059 Sum_probs=10.9
Q ss_pred hhHHHHHhhccCCC
Q psy9205 85 SARLFLTGSQEGHL 98 (220)
Q Consensus 85 ~sR~l~~~a~dg~l 98 (220)
.-|.||+|-++|.+
T Consensus 41 VNr~LY~L~~~G~v 54 (70)
T d1sfua_ 41 INQQLYKLQKEDTV 54 (70)
T ss_dssp HHHHHHHHHHTTSE
T ss_pred HHHHHHHHHHCCCe
Confidence 34788888888876
No 5
>d2uuia1 f.56.1.1 (A:2-147) Leukotriene C4 synthase {Human (Homo sapiens) [TaxId: 9606]}
Probab=13.14 E-value=1.6e+02 Score=18.49 Aligned_cols=17 Identities=24% Similarity=0.071 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHhhhccC
Q psy9205 135 LSVGACTAGLISLRFTQ 151 (220)
Q Consensus 135 ~~~~~~~~~~~~~r~~~ 151 (220)
+.+..-..-+.+.|++.
T Consensus 16 i~~~~~s~~V~~~R~k~ 32 (146)
T d2uuia1 16 LLQAYFSLQVISARRAF 32 (146)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 33333334455666654
No 6
>d2h8pc1 f.14.1.1 (C:22-78) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]}
Probab=9.23 E-value=89 Score=16.33 Aligned_cols=14 Identities=36% Similarity=0.802 Sum_probs=11.8
Q ss_pred cChhHHHHHHHHHH
Q psy9205 11 LNLPRAIWIAMPIV 24 (220)
Q Consensus 11 ~~~p~ai~~~~~~~ 24 (220)
+++|.++.++++..
T Consensus 39 ~sip~a~WWaivT~ 52 (57)
T d2h8pc1 39 ITYPRALWWACETA 52 (57)
T ss_dssp CSHHHHHHHHHHHH
T ss_pred cccchhhhhheeee
Confidence 69999999998754
No 7
>d3dtub2 f.17.2.1 (B:30-129) Bacterial aa3 type cytochrome c oxidase subunit II {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=7.54 E-value=2.2e+02 Score=16.28 Aligned_cols=11 Identities=0% Similarity=-0.073 Sum_probs=5.2
Q ss_pred HHHHhhhccCC
Q psy9205 142 AGLISLRFTQP 152 (220)
Q Consensus 142 ~~~~~~r~~~~ 152 (220)
....++|+++.
T Consensus 49 ~~~~~~r~~~~ 59 (100)
T d3dtub2 49 YAVWRFHEKRN 59 (100)
T ss_dssp HHHHHHBTTTC
T ss_pred HHhhhhhccCC
Confidence 34445555443
No 8
>d1rutx4 g.39.1.3 (X:114-146) LIM only 4 (Lmo4) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=7.38 E-value=22 Score=16.17 Aligned_cols=18 Identities=22% Similarity=0.407 Sum_probs=12.1
Q ss_pred HhhccCCCc-hhhhhhchh
Q psy9205 91 TGSQEGHLP-PLFSYIHIK 108 (220)
Q Consensus 91 ~~a~dg~lP-~~f~~~~~~ 108 (220)
+-.|.+..| ..|.++|.+
T Consensus 3 ~tC~n~LVPGDRFHyvNG~ 21 (33)
T d1rutx4 3 STCRNRLVPGDRFHYINGS 21 (33)
T ss_dssp TTTCCBCCTTCEEEEETTE
T ss_pred ccccccccCCceeEEecCE
Confidence 345677778 777777754
No 9
>d3ehbb2 f.17.2.1 (B:1-107) Bacterial aa3 type cytochrome c oxidase subunit II {Paracoccus denitrificans [TaxId: 266]}
Probab=4.86 E-value=3.3e+02 Score=15.65 Aligned_cols=10 Identities=0% Similarity=0.056 Sum_probs=4.8
Q ss_pred HHHHhhhccC
Q psy9205 142 AGLISLRFTQ 151 (220)
Q Consensus 142 ~~~~~~r~~~ 151 (220)
...+++|+++
T Consensus 55 ~~~~~~r~~~ 64 (107)
T d3ehbb2 55 ICIVRFNRRA 64 (107)
T ss_dssp HHHHHSBTTT
T ss_pred HHhhhhhccC
Confidence 3445555544
No 10
>d2ahme1 d.302.1.1 (E:43-197) Nonstructural protein 8, NSP8 {SARS coronavirus [TaxId: 227859]}
Probab=4.72 E-value=2.7e+02 Score=17.54 Aligned_cols=26 Identities=23% Similarity=0.510 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhhhH--------HHHHhhccCCCc
Q psy9205 74 TFGGVNGILFTSAR--------LFLTGSQEGHLP 99 (220)
Q Consensus 74 ~~~~~~~~~~~~sR--------~l~~~a~dg~lP 99 (220)
..+++.+.+++--| .++..||+|.+|
T Consensus 46 vvSamhtlLF~MlrkLD~~~vn~i~~~Ar~GvVP 79 (155)
T d2ahme1 46 VTSAMQTMLFTMLRKLDNDALNNIINNARDGCVP 79 (155)
T ss_dssp HHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCeee
Done!