RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy9205
(220 letters)
>gnl|CDD|233179 TIGR00911, 2A0308, L-type amino acid transporter. [Transport and
binding proteins, Amino acids, peptides and amines].
Length = 501
Score = 219 bits (560), Expect = 3e-69
Identities = 97/210 (46%), Positives = 138/210 (65%), Gaps = 10/210 (4%)
Query: 12 NLPRAIWIAMPIVTLVYVCANVAYFTVLTKEEMLTSPAVAVTFGGKIYKELVWIIPILVA 71
LP AI I+MPIVT +YV N+AYFTVL+ EE+L S AVAV FG ++ + W +P LV
Sbjct: 267 TLPIAIIISMPIVTFIYVLTNIAYFTVLSPEELLASLAVAVDFGERLLGVMSWAMPALVG 326
Query: 72 MSTFGGVNGILFTSARLFLTGSQEGHLPPLFSYIHIK----------ICLMSVLMLVTSD 121
+S FG VNG LF+S+RLF G +EGHLP L S IH+K +C +++LML + D
Sbjct: 327 LSCFGSVNGSLFSSSRLFFVGGREGHLPSLLSMIHVKRLTPLPSLLIVCTLTLLMLFSGD 386
Query: 122 VFALINYMSVALWLSVGACTAGLISLRFTQPDLHRPIKVHLSLPIIFLACCIFLVVVPTI 181
+++LIN +S A WL AGL+ LR+ +P+++RPIKV L P+ FL C+FL+++
Sbjct: 387 IYSLINLISFANWLFNALAVAGLLWLRYKRPEMNRPIKVPLFFPVFFLLSCLFLIILSLY 446
Query: 182 REPMNTVISLFIIASGVPVYYVCVKWKSKP 211
P+ + I+ +GVPVY+ V W++KP
Sbjct: 447 SPPVGCGVGFIIMLTGVPVYFFGVWWQNKP 476
>gnl|CDD|222193 pfam13520, AA_permease_2, Amino acid permease.
Length = 425
Score = 58.9 bits (143), Expect = 3e-10
Identities = 43/203 (21%), Positives = 92/203 (45%), Gaps = 21/203 (10%)
Query: 12 NLPRAIWIAMPIVTLVYVCANVAYFTVLTKEEMLTSPAVAVTFGGKIYKELV-----WII 66
++P+A++I + IV ++Y+ N+ + V+ +E+ + + +++ + I+
Sbjct: 218 DVPKALFIGLLIVGVLYLLVNILFLGVVPDDEI-AKLSNLPSVAALLFEAVGGPWGAIIV 276
Query: 67 PILVAMSTFGGVNGILFTSARLFLTGSQEGHLPPLFSYIH--------------IKICLM 112
IL+A+S G VN + S+R+ +++G LP F+ ++ + + L+
Sbjct: 277 VILLALSLLGAVNTAIVASSRVLEALARDGVLPKFFAKVNKFGSPVRALILTAILSLILL 336
Query: 113 SVLMLVTSDVFALINYMSVALWLSVGACTAGLISLRFTQPDLHRPIKVHLSLPIIFLACC 172
+ +L + AL++ +V L GL+ LR +PDL R + I+ +
Sbjct: 337 LLFLLSGAAYNALLSLSAVGYLLVYLLLIIGLLILRKKRPDLPRIKGRWP-VAILAILFI 395
Query: 173 IFLVVVPTIREPMNTVISLFIIA 195
+FL+V + S A
Sbjct: 396 LFLLVALFFPPGGPSTGSNLNYA 418
>gnl|CDD|223605 COG0531, PotE, Amino acid transporters [Amino acid transport and
metabolism].
Length = 466
Score = 55.9 bits (135), Expect = 3e-09
Identities = 46/229 (20%), Positives = 93/229 (40%), Gaps = 23/229 (10%)
Query: 12 NLPRAIWIAMPIVTLVYVCANVAYFTVLTKEEMLTSP---AVAVTFGGKIYKELVWIIPI 68
+PRAI +++ IV ++Y+ + VL ++ S +A+ II I
Sbjct: 233 TIPRAIILSLLIVLILYILGALVIVGVLPAGDLAASAPSAPLALAALFGGGNWGAIIIAI 292
Query: 69 LVAMSTFGGVNGILFTSARLFLTGSQEGHLPPLFSYIH---------------IKICLMS 113
L +S FG + + +R+ +++G LP F+ ++ I + L+
Sbjct: 293 LALLSLFGSLLAWILAVSRVLYAMARDGLLPKFFAKVNPKGRTPVIALILTGIISLILLL 352
Query: 114 VLMLVTSDVFALINYMSVALWLSVGACTAGLISLRFTQPDLHRPIK-----VHLSLPIIF 168
+ L + AL++ SVA ++ L+ LR +PDL RP + + L I+
Sbjct: 353 LFPLSSIAFNALVSLASVAFLIAYLLVALALLVLRRKKPDLKRPFRLPLAPLIPILGIVA 412
Query: 169 LACCIFLVVVPTIREPMNTVISLFIIASGVPVYYVCVKWKSKPALLLEM 217
+ ++ + + + VI + + Y+ + L+ E
Sbjct: 413 VLLLLYALYASGLPPLLLGVILIAGGIIIYLLVYLGLGRLLSAILIAEA 461
>gnl|CDD|129987 TIGR00909, 2A0306, amino acid transporter. [Transport and binding
proteins, Amino acids, peptides and amines].
Length = 429
Score = 53.6 bits (129), Expect = 2e-08
Identities = 46/209 (22%), Positives = 85/209 (40%), Gaps = 24/209 (11%)
Query: 12 NLPRAIWIAMPIVTLVYVCAN-----VAYFTVLTKEEMLTSPAVAVTFGGKIYKELVWII 66
++P+AI +++ +VTL+YV + L S V G I I+
Sbjct: 227 DIPKAIILSLIVVTLLYVLVAAVILGAVPWRQLAGSTAPLS-LVGYDLGQGIGG---LIL 282
Query: 67 PILVAMSTFGGVNGILFTSARLFLTGSQEGHLPPLFSYIHIK----------ICLMSVLM 116
S + ++ ++R+ S++G LP S +H K L + L+
Sbjct: 283 TAGAVFSIASVMLAGIYGTSRVLFAMSRDGLLPGSLSKVHPKTGTPHMSIIIFSLTAALL 342
Query: 117 LVTSDVFALINYMSVALWLSVGACTAGLISLRFTQPDLHRPIKVHLS--LPIIFLACCIF 174
+ L S+ ++ A +I LR +PD+ R + L LP++ ++ CI+
Sbjct: 343 ASLVPLEGLAELTSIGTLIAFAAVNVAVIILRRRRPDIQRAFRCPLVPVLPVLVVSYCIY 402
Query: 175 LVVVPTIREPMNTVISLFIIASGVPVYYV 203
L++ P TV L + G Y++
Sbjct: 403 LLLNLG---PGTTVWFLVWMLLGSVFYFI 428
>gnl|CDD|163525 TIGR03813, put_Glu_GABA_T, putative glutamate/gamma-aminobutyrate
antiporter. Members of this protein family are putative
putative glutamate/gamma-aminobutyrate antiporters. Each
member of the seed alignment is found adjacent to a
glutamate decarboxylase, which converts glutamate (Glu)
to gamma-aminobutyrate (GABA). However, the majority
belong to genome contexts with a glutaminase (converts
Gln to Glu) as well as the decarboxylase that converts
Glu to GABA. The specificity of the transporter remains
uncertain.
Length = 474
Score = 39.0 bits (91), Expect = 0.001
Identities = 44/170 (25%), Positives = 79/170 (46%), Gaps = 21/170 (12%)
Query: 12 NLPRAIWIAMPIVTLVYVCANVAYFTVLTKEEMLTSPAVAVTFGGKI-YKELVWIIPILV 70
N P AI IA L++V +A ++ +E++ + ++ V F + L W+ PIL
Sbjct: 226 NYPIAILIAALGTVLIFVLGTLAIAFIIPREDISLTQSLLVAFDNAFHWAGLSWLGPILA 285
Query: 71 AMSTFGGVNGILFTSA---RLFLTGSQEGHLPPLFSYIH-------------IKICLMSV 114
G + G++ A L ++ G+LP F + I + ++SV
Sbjct: 286 FALAIGVLAGVVTWVAGPSSGMLAVAKAGYLPTFFQKTNKNGMPIHIMFVQGIAVSVLSV 345
Query: 115 LMLVTSDV---FALINYMSVALWLSVGACT-AGLISLRFTQPDLHRPIKV 160
L +V V F +++ ++V L+L + A I LR++QPD RP ++
Sbjct: 346 LFVVMPSVQAAFQILSQLTVILYLVMYLLMFASAIYLRYSQPDRPRPYRI 395
>gnl|CDD|129986 TIGR00908, 2A0305, ethanolamine permease. The three genes used as
the seed for this model (from Burkholderia pseudomallei,
Pseudomonas aeruginosa and Clostridium acetobutylicum
are all adjacent to genes for the catabolism of
ethanolamine. Most if not all of the hits to this model
have a similar arrangement of genes. This group is a
member of the Amino Acid-Polyamine-Organocation (APC)
Superfamily [Transport and binding proteins, Amino
acids, peptides and amines].
Length = 442
Score = 38.7 bits (90), Expect = 0.002
Identities = 49/219 (22%), Positives = 86/219 (39%), Gaps = 21/219 (9%)
Query: 1 MSKEQGFQITLNLPRAIWIAMPIVTLVYVCANVAYFT--VLTKEEMLTSPAVAVTFGGKI 58
M+ E+ ++PR + A+ +TL+ + A + +E++ S I
Sbjct: 212 MAAEETKNPKRDIPRGLIGAI--LTLLALAAGILVVGPGAADAKELMGSNNPLPEALESI 269
Query: 59 YKELVWIIPILVAMSTFGGV---NGILFTSARLFLTGSQEGHLPPLFSYIHIK------I 109
Y W+ + + FG + +GI++ +R S+ G+LP S ++ K I
Sbjct: 270 YGGSTWMSQFVNLVGLFGLIASFHGIIYGYSRQIFALSRAGYLPESLSKVNRKKAPVLAI 329
Query: 110 CLMSV--LMLVTSDVFALINYMSV-ALWLSVGACTAGLISLRFTQPDLHRPIKVHLS--L 164
+ V L + ALI +SV +S A +LR +PD+ RP +
Sbjct: 330 VVPGVIGFGLSLTGQTALIILVSVFGAIISYVLSMAAHFTLRIRRPDMERPYRTPGGILT 389
Query: 165 PIIFLAC-CIFLVVVPTIREPMNTVISLFIIASGVPVYY 202
P + L C+ LV V+ I + YY
Sbjct: 390 PGVALVLACVALVT--GFYVDPRVVVGAVAIFVVLIGYY 426
>gnl|CDD|213912 TIGR04299, antiport_PotE, putrescine-ornithine antiporter. Members
of this protein family are putrescine-ornithine
antiporter. They work together with an enzyme that
decarboxylates ornithine to putrescine. This two-gene
system has the net effect of removing a protein from the
cytosol, providing transient resistance to acid
conditions.
Length = 430
Score = 32.2 bits (73), Expect = 0.22
Identities = 22/72 (30%), Positives = 40/72 (55%), Gaps = 1/72 (1%)
Query: 65 IIPILVAMSTFGGVNGILFTSARLFLTGSQEGHLPPLFSYIHIKICLMSVLMLVTSDVFA 124
I+ L+ +S FG + G FT A +F + + EG+ P +FS I + ML+ + + +
Sbjct: 273 IVMGLMVISCFGSLLGWQFTIAEVFRSSADEGYFPKIFSKT-IGNGTPLIGMLIITILQS 331
Query: 125 LINYMSVALWLS 136
L+ M+++ LS
Sbjct: 332 LLALMTISPSLS 343
>gnl|CDD|233181 TIGR00913, 2A0310, amino acid permease (yeast). [Transport and
binding proteins, Amino acids, peptides and amines].
Length = 478
Score = 31.1 bits (71), Expect = 0.43
Identities = 27/115 (23%), Positives = 54/115 (46%), Gaps = 10/115 (8%)
Query: 23 IVTLVYVCANVAY-----FTVLTKEEMLTSP-AVAVTFGGKIYKELVWIIPILVAMSTFG 76
I+TL + V Y + + + SP +A+ G K L I ++ +S
Sbjct: 246 ILTLFLIGFLVPYNDPRLLSSSSSSDSAASPFVIAIQNHG--IKVLPHIFNAVILISVLS 303
Query: 77 GVNGILFTSARLFLTGSQEGHLPPLFSYIHIKICLMSVLMLVTSDVFALINYMSV 131
N L+ S+R + +G P +F+Y+ + + V ++V+S +F L+ +++V
Sbjct: 304 AANSSLYASSRTLYALAHQGLAPKIFAYVD-RRGVPYVAVIVSS-LFGLLAFLAV 356
>gnl|CDD|182622 PRK10655, potE, putrescine transporter; Provisional.
Length = 438
Score = 30.0 bits (68), Expect = 1.1
Identities = 15/39 (38%), Positives = 24/39 (61%)
Query: 65 IIPILVAMSTFGGVNGILFTSARLFLTGSQEGHLPPLFS 103
I+ L+ MS G + G FT A++F + + EG+ P +FS
Sbjct: 275 IVMALMVMSCCGSLLGWQFTIAQVFKSSADEGYFPKIFS 313
>gnl|CDD|223903 COG0833, LysP, Amino acid transporters [Amino acid transport and
metabolism].
Length = 541
Score = 29.9 bits (68), Expect = 1.2
Identities = 15/66 (22%), Positives = 39/66 (59%), Gaps = 6/66 (9%)
Query: 68 ILVAMSTFGGVNGILFTSARLFLTGSQEGHLPPLFSYIHIK-ICLMSVLMLVTSDVFALI 126
IL ++ + N L+ S+R+ + +++G P +F+ + + + L++ +LVT +F L+
Sbjct: 333 ILTSVLSAA--NSGLYASSRMLYSLAKQGKAPKIFAKVDRRGVPLVA--LLVTL-LFGLL 387
Query: 127 NYMSVA 132
+++ +
Sbjct: 388 AFLNSS 393
>gnl|CDD|129983 TIGR00905, 2A0302, transporter, basic amino acid/polyamine
antiporter (APA) family. This family includes several
families of antiporters that, rather commonly, are
encoded next to decarboxylases that convert one of the
antiporter substrates into the other. This arrangement
allows a cycle that can remove proteins from the
cytoplasm and thereby protect against acidic conditions
[Transport and binding proteins, Amino acids, peptides
and amines].
Length = 473
Score = 29.3 bits (66), Expect = 1.6
Identities = 39/230 (16%), Positives = 81/230 (35%), Gaps = 43/230 (18%)
Query: 12 NLPRAIWIAMPIVTLVYVCANVAYFTVLTKEEMLTSPA-----VAVTFGGKIYKELVWII 66
++ +A + ++Y+ + VL ++E+ P V GK L I
Sbjct: 230 DVGKATVLGTLGALVIYILITLLSLGVLPQQELANLPNPSMAAVLEMIVGKWGAVL---I 286
Query: 67 PILVAMSTFGGVNGILFTSARLFLTGSQEGHLPPLFSYIH-------------IKICLMS 113
+ + +S G + +A + + +++G P +F ++ I I L
Sbjct: 287 SLGLIISVLGSLLSWTMLAAEVPFSAAKDGLFPKIFGRVNKNGAPSVALLLTNILIQLFL 346
Query: 114 VLMLVTSDVFA----------LINYMSVALWLSVGACTAGLISLRFTQPDLHRPIKVHLS 163
+L L+TS + L+ Y+ A +L ++ T P + L
Sbjct: 347 LLTLLTSSAYNVLVSLAVVMILVPYLLSAAYLLK-------LAKVGTYPKIKNR--KALI 397
Query: 164 LPIIFLACCIFLVVVPTIREPMNTVISLFIIASGVPVYYVCVKWKSKPAL 213
+ +I I+L+ ++ + I G+ Y K + K
Sbjct: 398 VGVIACVYSIWLLYAAGLKYLLLGFILYAP---GIIFYGRARKERGKHVF 444
>gnl|CDD|215858 pfam00324, AA_permease, Amino acid permease.
Length = 473
Score = 28.1 bits (63), Expect = 3.6
Identities = 28/146 (19%), Positives = 60/146 (41%), Gaps = 11/146 (7%)
Query: 12 NLPRAIWIAMPIVTLVYVCANVA--------YFTVLTKEEMLTSPAVAVTFGGKIYKELV 63
+P+AI A+ +T+ Y+ + +A +L SP V I L
Sbjct: 227 AIPKAILQAVWRITIFYILSLLAIGLLVPWNDPGLLADSASAASPFVIFFKSLGI-SGLA 285
Query: 64 WIIPILVAMSTFGGVNGILFTSARLFLTGSQEGHLPPLFSYI-HIKICLMSVLM-LVTSD 121
+I ++ + N L++ +R+ +++G P + + L ++L+ S
Sbjct: 286 PLINAVILTAALSAANSSLYSGSRVLYALARDGLAPKFLKKVDKSGVPLRAILLSTAISL 345
Query: 122 VFALINYMSVALWLSVGACTAGLISL 147
+ L+ ++ A+ + +GLI L
Sbjct: 346 LAVLLASLNPAIVFNFLLAISGLIGL 371
>gnl|CDD|183096 PRK11357, frlA, putative fructoselysine transporter; Provisional.
Length = 445
Score = 27.9 bits (62), Expect = 4.0
Identities = 34/208 (16%), Positives = 88/208 (42%), Gaps = 19/208 (9%)
Query: 12 NLPRAIWIAMPIVTLVYVCANVAYFTVLTKEEMLTSP---AVAVTFGGKIYKELVWIIPI 68
+PRA+ + +V ++Y + ++ +++ S + A+T+ + + I
Sbjct: 227 TMPRALIGSCLLVLVLYTLLALVISGLMPFDKLANSETPISDALTWIPALGSTAGIFVAI 286
Query: 69 LVAMSTFGGVNGILFTSARLFLTGSQEGHLPPLFSYIHIKI----------CLMSVLMLV 118
+ G ++ + RL +++ F ++H K + + +
Sbjct: 287 TAMIVILGSLSSCVMYQPRLEYAMAKDNLFFKCFGHVHPKYNTPDVSIILQGALGIFFIF 346
Query: 119 TSDVFALINYMSVALWLSVGACTAGLISLRFTQPDLHRPIKVHLSLPII-FLACCIFLVV 177
SD+ +L+ Y ++ + +I R + D ++P+ + ++ LA L++
Sbjct: 347 VSDLTSLLGYFTLVMCFKNTLTFGSIIWCR--KRDDYKPLWRTPAFGLMTTLAIASSLIL 404
Query: 178 VPT--IREPMNTVI-SLFIIASGVPVYY 202
V + + P+ +I ++ +IA+G+P Y
Sbjct: 405 VASTFVWAPIPGLICAVIVIATGLPAYA 432
>gnl|CDD|181811 PRK09379, PRK09379, membrane-bound transcriptional regulator LytR;
Provisional.
Length = 303
Score = 27.4 bits (61), Expect = 5.5
Identities = 10/33 (30%), Positives = 15/33 (45%), Gaps = 3/33 (9%)
Query: 187 TVISLFIIASGVPVYYVCVKWKSKPALLLEMHE 219
+I + II G+ Y V + L E+HE
Sbjct: 11 GIIGVLIIGGGIYAYNVYSSVSNT---LDEVHE 40
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.330 0.142 0.442
Gapped
Lambda K H
0.267 0.0760 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 11,396,524
Number of extensions: 1083546
Number of successful extensions: 1450
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1429
Number of HSP's successfully gapped: 91
Length of query: 220
Length of database: 10,937,602
Length adjustment: 93
Effective length of query: 127
Effective length of database: 6,812,680
Effective search space: 865210360
Effective search space used: 865210360
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 57 (25.7 bits)