RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy9205
(220 letters)
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound,
amino-acid transport, cell inner membrane, cell
membrane, membrane; HET: ARG BNG; 3.00A {Escherichia
coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A
3ncy_A
Length = 445
Score = 80.5 bits (199), Expect = 7e-18
Identities = 36/216 (16%), Positives = 70/216 (32%), Gaps = 22/216 (10%)
Query: 12 NLPRAIWIAMPIVTLVYVCANVAYFTVLTKEEMLTSPAVAVTFGGKIYKELV-WIIPILV 70
N+P A + I + YV + A ++ + S + + I+
Sbjct: 223 NVPIATIGGVLIAAVCYVLSTTAIMGMIPNAALRVSASPFGDAARMALGDTAGAIVSFCA 282
Query: 71 AMSTFGGVNGILFTSARLFLTGSQEGHLPPLFSYIH----------IKICLMSVLMLVTS 120
A G + G + + + +G PP+F+ ++ I LM++ L +
Sbjct: 283 AAGCLGSLGGWTLLAGQTAKAAADDGLFPPIFARVNKAGTPVAGLIIVGILMTIFQLSSI 342
Query: 121 DVFALINYMSVALWLSVGA------CTAGLISLRFTQPDLHRPIKVHLSLPIIFLACCIF 174
A + V+ + A L+ L RP +L++ I CI+
Sbjct: 343 SPNATKEFGLVSSVSVIFTLVPYLYTCAALLLLGHGHFGKARPA--YLAVTTIAFLYCIW 400
Query: 175 LVVVPTIREPMNTVISLFIIASGVPVYYVCVKWKSK 210
VV + S + +Y + K
Sbjct: 401 AVVGS---GAKEVMWSFVTLMVITAMYALNYNRLHK 433
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT,
glutamate-GABA antiporter, transport protein; 3.10A
{Escherichia coli} PDB: 4dji_A
Length = 511
Score = 59.5 bits (144), Expect = 1e-10
Identities = 29/229 (12%), Positives = 72/229 (31%), Gaps = 33/229 (14%)
Query: 12 NLPRAIWIAMPIVTLVYVCANVAYFTVLTKEEMLTSPAVAVTFG------GKIYKELVWI 65
+ P A+ + M + ++ V+ E+ S V TF + V +
Sbjct: 233 DYPLAMLLLMVAAICLSSVGGLSIAMVIPGNEINLSAGVMQTFTVLMSHVAPEIEWTVRV 292
Query: 66 IPILVAMSTFGGVNGILFTSARLFLTGSQEGHLPPLFSYIH-----------------IK 108
I L+ + + + +R +Q+ LP F+ ++ I
Sbjct: 293 ISALLLLGVLAEIASWIVGPSRGMYVTAQKNLLPAAFAKMNKNGVPVTLVISQLVITSIA 352
Query: 109 ICLMSVLMLVTSDVFALINYMSVALWLSVGACT-AGLISLRFTQPDLHRPIKVHLS---- 163
+ +++ + F + ++V ++L G I L PDL R +
Sbjct: 353 LIILTNTGGGNNMSFLIALALTVVIYLCAYFMLFIGYIVLVLKHPDLKRTFNIPGGKGVK 412
Query: 164 -----LPIIFLACCIFLVVVPTIREPMNTVISLFIIASGVPVYYVCVKW 207
+ ++ + +P ++ + + + + +
Sbjct: 413 LVVAIVGLLTSIMAFIVSFLPPDNIQGDSTDMYVELLVVSFLVVLALPF 461
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell
membrane, membrane, transmembrane, transport protein;
HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB:
3gi9_C* 3gi8_C
Length = 444
Score = 57.3 bits (139), Expect = 5e-10
Identities = 32/209 (15%), Positives = 72/209 (34%), Gaps = 14/209 (6%)
Query: 12 NLPRAIWIAMPIVTLVYVCANVAYFTVLTKEEMLTS--PAVAVTFGGKIYKELVWIIPIL 69
N+PRAI+I++ IV VYV ++ L +E++ + A+AV + +I I
Sbjct: 220 NVPRAIFISILIVMFVYVGVAISAIGNLPIDELIKASENALAVAAKPFLGNLGFLLISIG 279
Query: 70 VAMSTFGGVNGILFTSARLFLTGSQEGHLPPLFSYIHIK--------ICLMSVLMLVTSD 121
S +N ++ A + + +++G LP F + VL + +
Sbjct: 280 ALFSISSAMNATIYGGANVAYSLAKDGELPEFFERKVWFKSTEGLYITSALGVLFALLFN 339
Query: 122 VFALINYMSVALWLSVGACTAGLISLRFTQPDLHRPIKVHLSLPIIFLACCIFLVVVPTI 181
+ + + S + L + + + ++ +
Sbjct: 340 MEGVASITSAVFMVIYLFVILSHYILIDEVGGRKEIVIFSFIVVLGVFLLLLYYQWITNR 399
Query: 182 REPMNTVISLFIIASGVPVYYVCVKWKSK 210
+ GV ++ + + +K
Sbjct: 400 ----FVFYGIIATFIGVLIFEIIYRKVTK 424
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 35.8 bits (82), Expect = 0.010
Identities = 30/156 (19%), Positives = 46/156 (29%), Gaps = 48/156 (30%)
Query: 6 GF---QITLNLPRAIWIAMPIVTLVYVCANVAYFTVLTKEEMLTSPAVAVTFGGKIYKEL 62
GF I +N P + I + N ++ + E ++ KI+KE+
Sbjct: 1658 GFSILDIVINNPVNLTIHFGGEKGKRIREN---YSAMIFETIVDGKLKTE----KIFKEI 1710
Query: 63 VWIIPILVAMSTFGGVNGIL----FTSARLFLTGSQEGHLPPLFSYIHIKICLMSVL--- 115
TF G+L FT L L L
Sbjct: 1711 NEHSTSY----TFRSEKGLLSATQFTQPALTLME----------------KAAFEDLKSK 1750
Query: 116 -MLVTSDVFA---LINYMSVALWLSVGACTAGLISL 147
++ FA L Y AL A A ++S+
Sbjct: 1751 GLIPADATFAGHSLGEY--AAL-----ASLADVMSI 1779
Score = 31.6 bits (71), Expect = 0.21
Identities = 20/114 (17%), Positives = 35/114 (30%), Gaps = 26/114 (22%)
Query: 72 MSTFGG--VNGILFTSAR-LFLTGSQEGHLPPLFSYIHIKICLMSVLMLVTSDVFALINY 128
++ FGG F R L+ T + L + L ++
Sbjct: 157 VAIFGGQGNTDDYFEELRDLYQTY--HVLVGDLIKFSAET--LSELIRTTLDAEKVFTQG 212
Query: 129 MSVALWLSVGACTAGLISLRFTQPD----LHRPIKVHLSLPIIFL-ACCIFLVV 177
+++ WL + PD L PI S P+I + ++V
Sbjct: 213 LNILEWLENPS----------NTPDKDYLLSIPI----SCPLIGVIQLAHYVVT 252
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl RED
beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
cerevisiae}
Length = 1688
Score = 34.1 bits (78), Expect = 0.038
Identities = 4/28 (14%), Positives = 6/28 (21%), Gaps = 4/28 (14%)
Query: 67 PILVAMST---FGGVNG-ILFTSARLFL 90
+ T FG G +
Sbjct: 1436 GVRAVSITSFGFGQKGGQAIVVHPDYLY 1463
Score = 27.9 bits (62), Expect = 3.3
Identities = 13/43 (30%), Positives = 19/43 (44%), Gaps = 13/43 (30%)
Query: 118 VTSDVF--ALINYMS---VALWLS--------VGACTAGLISL 147
V +D+ + IN MS L +S VGAC + S+
Sbjct: 1071 VQNDILQESFINTMSAWVNMLLISSSGPIKTPVGACATSVESV 1113
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 29.1 bits (64), Expect = 1.3
Identities = 19/159 (11%), Positives = 49/159 (30%), Gaps = 47/159 (29%)
Query: 30 CANVAYFT--VLTKEE---MLTSP----AVAVTF------GGKIYKELV---------WI 65
C +V +L+KEE ++ S F ++ ++ V ++
Sbjct: 35 CKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFL 94
Query: 66 IPILVAMSTFGGVNGILFTSARLFLTGSQE----GHLPPLFSYIHIKICL---------- 111
+ + + ++ R L + ++ L Y+ ++ L
Sbjct: 95 MSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVL 154
Query: 112 ---M-----SVLMLVTSDVFALINYMSVAL-WLSVGACT 141
+ + + L + + M + WL++ C
Sbjct: 155 IDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCN 193
>2uv8_A Fatty acid synthase subunit alpha (FAS2); fatty acid biosynthesis,
malonyl/palmitoyl transferase, phosphopantetheine,
transferase; HET: GVL FMN; 3.10A {Saccharomyces
cerevisiae} PDB: 2vkz_A* 3hmj_A*
Length = 1887
Score = 27.2 bits (60), Expect = 4.7
Identities = 4/28 (14%), Positives = 6/28 (21%), Gaps = 4/28 (14%)
Query: 67 PILVAMST---FGGVNG-ILFTSARLFL 90
+ T FG G +
Sbjct: 1635 GVRAVSITSFGFGQKGGQAIVVHPDYLY 1662
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.330 0.142 0.442
Gapped
Lambda K H
0.267 0.0616 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,371,005
Number of extensions: 193268
Number of successful extensions: 335
Number of sequences better than 10.0: 1
Number of HSP's gapped: 327
Number of HSP's successfully gapped: 15
Length of query: 220
Length of database: 6,701,793
Length adjustment: 90
Effective length of query: 130
Effective length of database: 4,188,903
Effective search space: 544557390
Effective search space used: 544557390
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 55 (25.2 bits)