RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy9205
         (220 letters)



>d1e29a_ a.3.1.1 (A:) Photosystem II associated cytochrome c549
           {Synechocystis sp., pcc 6803 [TaxId: 1143]}
          Length = 135

 Score = 26.0 bits (56), Expect = 2.9
 Identities = 7/31 (22%), Positives = 13/31 (41%), Gaps = 7/31 (22%)

Query: 36  FTVLTKEE-------MLTSPAVAVTFGGKIY 59
               T+++        L +P +   +GG IY
Sbjct: 104 MRNYTEDDIFDVAGYTLIAPKLDERWGGTIY 134


>gi|42558976|sp|Q865X7.1|IL1A_LAMGL(121-267:268) RecName:
           Full=Interleukin-1 alpha; Short=IL-1 alpha; Flags:
           Precursor   gi|29603601|dbj|BAC75382.1| interleukin 1
           alpha [Lama glama]  E=9e-54 s/c=1.44 id=71% cov=99%
          Length = 147

 Score = 25.2 bits (55), Expect = 5.6
 Identities = 10/32 (31%), Positives = 15/32 (46%), Gaps = 8/32 (25%)

Query: 196 SGVPVY--------YVCVKWKSKPALLLEMHE 219
           S +PV         +V  + + +P LL EM E
Sbjct: 58  SQLPVTLRISKTQLFVSAQNEDEPVLLKEMPE 89


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.330    0.142    0.442 

Gapped
Lambda     K      H
   0.267   0.0637    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 812,717
Number of extensions: 35513
Number of successful extensions: 64
Number of sequences better than 10.0: 1
Number of HSP's gapped: 64
Number of HSP's successfully gapped: 4
Length of query: 220
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 138
Effective length of database: 1,281,736
Effective search space: 176879568
Effective search space used: 176879568
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 51 (23.6 bits)