Query psy9206
Match_columns 190
No_of_seqs 131 out of 1223
Neff 8.8
Searched_HMMs 46136
Date Fri Aug 16 21:37:08 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9206.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/9206hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR00911 2A0308 L-type amino 99.9 5.6E-22 1.2E-26 172.2 18.6 162 22-186 36-197 (501)
2 KOG1287|consensus 99.9 2.9E-22 6.2E-27 169.6 13.1 163 21-186 5-167 (479)
3 KOG1289|consensus 99.9 1.4E-22 3.1E-27 172.2 11.2 160 11-173 31-198 (550)
4 PRK15049 L-asparagine permease 99.9 1.5E-21 3.2E-26 169.5 17.8 113 22-137 22-134 (499)
5 PRK10249 phenylalanine transpo 99.9 2.5E-21 5.5E-26 166.5 16.8 119 21-143 14-132 (458)
6 TIGR03428 ureacarb_perm permea 99.9 2.6E-21 5.6E-26 167.1 16.1 162 18-185 3-175 (475)
7 PRK10238 aromatic amino acid t 99.9 9.8E-21 2.1E-25 162.7 16.5 118 22-143 6-123 (456)
8 PRK11387 S-methylmethionine tr 99.9 1.3E-20 2.9E-25 162.5 16.7 116 24-142 10-125 (471)
9 TIGR01773 GABAperm gamma-amino 99.9 3E-20 6.5E-25 159.5 17.7 150 21-182 5-154 (452)
10 PRK10746 putative transport pr 99.8 3.7E-20 8.1E-25 159.4 16.5 118 22-143 4-121 (461)
11 PRK10836 lysine transporter; P 99.8 6.3E-20 1.4E-24 159.0 18.0 117 24-143 11-127 (489)
12 PRK11357 frlA putative fructos 99.8 8E-20 1.7E-24 156.6 17.6 156 23-185 3-158 (445)
13 PRK10644 arginine:agmatin anti 99.8 7.9E-20 1.7E-24 156.6 15.8 153 24-185 4-156 (445)
14 PRK10580 proY putative proline 99.8 1.3E-19 2.9E-24 155.7 16.7 117 23-143 4-120 (457)
15 TIGR00906 2A0303 cationic amin 99.8 1.4E-19 3.1E-24 158.9 16.9 158 23-186 23-193 (557)
16 TIGR00907 2A0304 amino acid pe 99.8 1E-19 2.2E-24 157.3 15.1 151 19-172 3-163 (482)
17 TIGR00905 2A0302 transporter, 99.8 1.3E-19 2.7E-24 156.5 15.4 156 25-186 4-161 (473)
18 PRK10655 potE putrescine trans 99.8 2.5E-19 5.4E-24 153.2 16.5 151 26-185 4-154 (438)
19 COG0833 LysP Amino acid transp 99.8 2.7E-19 5.8E-24 152.6 15.6 147 25-175 41-187 (541)
20 TIGR00908 2A0305 ethanolamine 99.8 6E-19 1.3E-23 151.0 16.0 152 22-185 1-152 (442)
21 PRK10435 cadB lysine/cadaverin 99.8 7.6E-19 1.7E-23 150.2 16.0 150 25-184 2-151 (435)
22 KOG1286|consensus 99.8 1.4E-19 3.1E-24 157.5 10.4 162 21-187 23-194 (554)
23 PRK11049 D-alanine/D-serine/gl 99.8 2.7E-18 5.8E-23 148.2 16.7 151 23-185 15-165 (469)
24 COG1113 AnsP Gamma-aminobutyra 99.8 2.9E-18 6.2E-23 143.7 16.0 148 21-174 6-153 (462)
25 TIGR03810 arg_ornith_anti argi 99.8 3E-18 6.6E-23 147.7 16.2 153 28-186 1-155 (468)
26 PRK11021 putative transporter; 99.8 5.4E-18 1.2E-22 143.9 16.4 147 30-186 1-147 (410)
27 TIGR00913 2A0310 amino acid pe 99.8 9.9E-18 2.1E-22 144.8 16.6 114 27-143 1-115 (478)
28 TIGR00909 2A0306 amino acid tr 99.8 2.4E-17 5.2E-22 140.5 15.2 154 26-186 1-165 (429)
29 TIGR00930 2a30 K-Cl cotranspor 99.7 5.3E-17 1.2E-21 149.4 13.4 158 25-188 73-237 (953)
30 PF13520 AA_permease_2: Amino 99.7 4.1E-16 8.9E-21 132.6 15.1 149 30-186 1-150 (426)
31 PRK10197 gamma-aminobutyrate t 99.7 4E-16 8.8E-21 133.9 14.3 135 38-184 2-136 (446)
32 COG0531 PotE Amino acid transp 99.6 9.2E-15 2E-19 125.3 15.1 158 21-186 5-166 (466)
33 PRK15238 inner membrane transp 99.6 1.6E-13 3.5E-18 119.3 17.3 88 26-118 5-94 (496)
34 PHA02764 hypothetical protein; 99.5 1E-13 2.2E-18 111.4 9.2 105 20-126 4-108 (399)
35 TIGR03813 put_Glu_GABA_T putat 99.5 1.8E-12 3.9E-17 112.1 15.2 86 28-119 1-87 (474)
36 TIGR00910 2A0307_GadC glutamat 99.5 2E-12 4.2E-17 112.8 14.5 142 27-181 3-150 (507)
37 PF00324 AA_permease: Amino ac 99.4 2.8E-13 6.1E-18 117.2 4.8 101 36-138 3-103 (478)
38 TIGR00912 2A0309 spore germina 99.4 1.9E-11 4.1E-16 102.1 15.5 111 28-142 1-111 (359)
39 TIGR00837 araaP aromatic amino 99.3 4.5E-11 9.7E-16 100.6 11.7 142 37-188 4-148 (381)
40 PF03845 Spore_permease: Spore 98.4 2.6E-05 5.7E-10 64.2 16.3 121 29-156 1-121 (320)
41 TIGR00814 stp serine transport 98.2 3.8E-05 8.2E-10 65.3 13.7 95 36-137 9-108 (397)
42 PF03222 Trp_Tyr_perm: Tryptop 98.2 4.4E-05 9.6E-10 64.9 13.7 108 29-139 2-109 (394)
43 TIGR00796 livcs branched-chain 98.1 0.00016 3.4E-09 61.1 15.1 137 39-188 4-145 (378)
44 PRK10483 tryptophan permease; 98.0 0.00039 8.4E-09 59.4 14.8 111 26-139 7-117 (414)
45 PRK09664 tryptophan permease T 97.9 0.00074 1.6E-08 57.7 14.4 106 31-139 10-115 (415)
46 COG0814 SdaC Amino acid permea 97.7 0.0022 4.8E-08 54.9 14.7 111 25-138 4-115 (415)
47 PRK15132 tyrosine transporter 97.6 0.0029 6.4E-08 53.9 13.9 105 31-138 4-108 (403)
48 PRK13629 threonine/serine tran 97.4 0.017 3.6E-07 49.8 16.3 106 27-137 18-124 (443)
49 PF01235 Na_Ala_symp: Sodium:a 97.3 0.01 2.3E-07 50.7 14.0 82 24-107 13-101 (416)
50 KOG2083|consensus 97.2 0.0014 3.1E-08 57.5 7.9 154 27-188 27-182 (643)
51 KOG1303|consensus 97.1 0.013 2.9E-07 50.5 12.3 111 25-138 33-148 (437)
52 TIGR00835 agcS amino acid carr 96.8 0.12 2.5E-06 44.5 15.4 107 28-137 45-159 (425)
53 PTZ00206 amino acid transporte 96.4 0.21 4.6E-06 43.5 14.8 102 33-138 63-164 (467)
54 COG1115 AlsT Na+/alanine sympo 96.1 0.63 1.4E-05 40.1 15.7 87 25-113 58-152 (452)
55 KOG2082|consensus 95.8 0.053 1.2E-06 49.3 8.4 76 66-142 150-226 (1075)
56 TIGR00800 ncs1 NCS1 nucleoside 93.8 3 6.5E-05 36.0 13.8 92 24-118 8-100 (442)
57 PRK11375 allantoin permease; P 93.6 4.6 0.0001 35.4 16.2 93 21-116 18-111 (484)
58 COG1457 CodB Purine-cytosine p 93.2 2.7 5.9E-05 36.4 12.3 92 65-163 54-145 (442)
59 PLN03074 auxin influx permease 91.9 5.7 0.00012 34.8 12.9 83 30-114 46-140 (473)
60 KOG1288|consensus 90.4 0.5 1.1E-05 42.9 4.9 86 53-140 91-177 (945)
61 KOG1304|consensus 90.4 11 0.00025 32.7 13.9 111 27-140 44-169 (449)
62 TIGR00813 sss transporter, SSS 89.7 12 0.00025 31.9 15.2 148 27-184 2-150 (407)
63 PRK00701 manganese transport p 87.3 19 0.00041 31.3 14.9 44 69-112 67-112 (439)
64 PF02133 Transp_cyt_pur: Perme 84.6 12 0.00025 32.2 9.8 109 25-138 4-114 (440)
65 PF01490 Aa_trans: Transmembra 83.7 1.2 2.6E-05 37.5 3.3 89 28-118 1-92 (409)
66 COG3949 Uncharacterized membra 82.4 28 0.00061 29.2 12.2 118 36-161 9-128 (349)
67 PRK11017 codB cytosine permeas 80.2 36 0.00079 29.0 15.0 89 25-118 6-95 (404)
68 PF00474 SSF: Sodium:solute sy 79.8 36 0.00078 28.7 14.6 148 27-184 5-154 (406)
69 COG0591 PutP Na+/proline sympo 70.8 74 0.0016 28.0 16.4 106 27-137 37-148 (493)
70 TIGR03648 Na_symport_lg probab 67.2 93 0.002 27.7 14.5 107 27-138 31-139 (552)
71 PF01566 Nramp: Natural resist 61.3 96 0.0021 25.8 12.1 67 70-137 16-84 (358)
72 PRK09442 panF sodium/panthothe 56.7 1.4E+02 0.0029 26.1 15.8 109 27-138 40-152 (483)
73 PF03806 ABG_transport: AbgT p 55.5 1.4E+02 0.003 26.6 9.4 70 69-138 300-374 (502)
74 TIGR02119 panF sodium/pantothe 54.7 1.4E+02 0.0031 25.8 15.4 109 27-138 39-151 (471)
75 KOG1305|consensus 48.6 1.1E+02 0.0025 26.3 7.8 65 27-93 3-67 (411)
76 PRK12488 acetate permease; Pro 48.3 2E+02 0.0044 25.7 15.8 107 27-138 66-174 (549)
77 PF02554 CstA: Carbon starvati 45.6 1.9E+02 0.0042 24.7 16.5 86 30-118 52-138 (376)
78 PRK09395 actP acetate permease 45.5 2.2E+02 0.0048 25.4 15.4 105 27-138 68-176 (551)
79 PF10856 DUF2678: Protein of u 45.4 41 0.00089 23.6 3.8 56 132-187 43-99 (118)
80 PF12666 PrgI: PrgI family pro 39.7 91 0.002 20.4 4.8 27 26-52 13-39 (93)
81 PF13317 DUF4088: Protein of u 27.2 33 0.00073 26.3 1.1 23 84-106 41-63 (229)
82 PF11286 DUF3087: Protein of u 26.6 2.3E+02 0.0049 21.3 5.3 38 120-158 21-58 (165)
83 TIGR02121 Na_Pro_sym sodium/pr 21.7 5.4E+02 0.012 22.4 15.0 43 95-138 105-150 (487)
84 COG5478 Predicted small integr 20.2 2.4E+02 0.0052 20.5 4.3 21 98-118 11-31 (141)
No 1
>TIGR00911 2A0308 L-type amino acid transporter.
Probab=99.89 E-value=5.6e-22 Score=172.23 Aligned_cols=162 Identities=51% Similarity=0.917 Sum_probs=132.8
Q ss_pred cccccccccchhHHHHHHhhhhhcchhccchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhhcccCcchHhhHH
Q psy9206 22 IKVQMKRKITLLGGVSIIVGCIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTIGALCYAELGTCISRSGGDYAYIL 101 (190)
Q Consensus 22 ~~~~l~r~l~~~~~~~~~~~~~ig~g~~~~~~~~~~~~G~~g~~~~~~li~~i~~~~~~~~~aEl~s~~P~~GG~y~~~~ 101 (190)
+++++||+++.++.++++++.++|+|++..++..+..+|+.|..+++|+++++..++.+++++|+++++|++||+|+|++
T Consensus 36 ~~~~l~r~l~~~~~~~l~vg~iiGsGif~~~~~~~~~~G~~g~~~~~~ii~~i~~~~~al~~aELas~~P~sGG~y~~~~ 115 (501)
T TIGR00911 36 EAVALKKEITLLSGVGIIVGTIIGSGIFVSPKGVLKNAGSVGLALIMWAVCGIFSIVGALVYAELGTTIPKSGGEYNYIL 115 (501)
T ss_pred cccccCccccHhHhhHhheeceEEeeEeecHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchhhhHH
Confidence 56789999999999999999999999999999988888887766778999999999999999999999999999999999
Q ss_pred HHhCchhHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhCCCCCCcHHHHHHHHHHHHHHHHhhhhhhcCCCCchhHHHH
Q psy9206 102 VAFGELPAFLRLWVALLIMRPTTQAIVALTFAQYAIKPFFPDSELPDRAVLLLAAACLCKNGNAIKPFFPDSELPDRAVL 181 (190)
Q Consensus 102 ~~~g~~~~~~~gw~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 181 (190)
+.+||+.||+++|.++....+...+..+..+++++...++++...+.+...+++.+++++++ .+|.+. .+..++.|.
T Consensus 116 ~~~g~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~~~~~~~~~~~~i~~~~i~~~~-~ln~~G--vk~~~~~~~ 192 (501)
T TIGR00911 116 EVFGPLLAFLRLWIELLVIRPGSQAVNALNFAIYILTPVFPDCEVPEWAIRLVAVLCVLLLT-LVNCLS--VKWATRVQD 192 (501)
T ss_pred hHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHH-HHHHhh--hHHHHHHHH
Confidence 99999999999999876344566777777788887543566666666766777766666665 666664 455577776
Q ss_pred HHHHH
Q psy9206 182 LLAAA 186 (190)
Q Consensus 182 ~~~~~ 186 (190)
+++.+
T Consensus 193 i~~~~ 197 (501)
T TIGR00911 193 IFTAC 197 (501)
T ss_pred HHHHH
Confidence 66543
No 2
>KOG1287|consensus
Probab=99.88 E-value=2.9e-22 Score=169.60 Aligned_cols=163 Identities=60% Similarity=0.970 Sum_probs=149.8
Q ss_pred ccccccccccchhHHHHHHhhhhhcchhccchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhhcccCcchHhhH
Q psy9206 21 PIKVQMKRKITLLGGVSIIVGCIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTIGALCYAELGTCISRSGGDYAYI 100 (190)
Q Consensus 21 ~~~~~l~r~l~~~~~~~~~~~~~ig~g~~~~~~~~~~~~G~~g~~~~~~li~~i~~~~~~~~~aEl~s~~P~~GG~y~~~ 100 (190)
+++.++|||+++++.+.+.++.++|+|+|..+..+..++|+.|.+++.|+.+++..+.-+++|+|+++++|++||.|.|.
T Consensus 5 ~~~~~~~kkigll~~v~livg~iIGsGIFvsp~~Vl~~~gsvg~sL~iWv~~gi~s~~galcyaELGT~ipksGgd~ayi 84 (479)
T KOG1287|consen 5 GEEVQLKKKIGLLSGVSLIVGNIIGSGIFVSPKGVLANTGSVGLSLIIWVFCGIISIIGALCYAELGTSIPKSGGDYAYI 84 (479)
T ss_pred cccccccceeeeecceeEEEEeeEecccccCcHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHHHhccccCCCcchhhH
Confidence 34556889999999999999999999999999999999999998888999999999999999999999999999999999
Q ss_pred HHHhCchhHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhCCCCCCcHHHHHHHHHHHHHHHHhhhhhhcCCCCchhHHH
Q psy9206 101 LVAFGELPAFLRLWVALLIMRPTTQAIVALTFAQYAIKPFFPDSELPDRAVLLLAAACLCKNGNAIKPFFPDSELPDRAV 180 (190)
Q Consensus 101 ~~~~g~~~~~~~gw~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 180 (190)
.+.||++.+|...|..++...+...|..+..+++|..+.++|..++++...++++..++++++ .+|....| .+++.|
T Consensus 85 ~~afg~~~aF~~~wvs~l~~~p~~~Ai~altF~~Y~l~p~fp~c~~p~~~~~lla~~~l~~lt-~~n~~~V~--~a~~vq 161 (479)
T KOG1287|consen 85 SEAFGPFPAFLFLWVSLLIIVPTSAAIIALTFATYLLKPFFPLCDVPRVASKLLAAALLVLLT-LINSFSVK--WATRVQ 161 (479)
T ss_pred HHHhccchhHHHHHHHHHHHhhhHHHHHHHHHHHHhhcccCCCCCCchHHHHHHHHHHHHHHH-HHhhhhhh--HHHHHH
Confidence 999999999999999999788888899999999996556888778899999999999999999 88888766 789999
Q ss_pred HHHHHH
Q psy9206 181 LLLAAA 186 (190)
Q Consensus 181 ~~~~~~ 186 (190)
.+++..
T Consensus 162 ~~ft~~ 167 (479)
T KOG1287|consen 162 IVFTIA 167 (479)
T ss_pred HHHHHH
Confidence 887753
No 3
>KOG1289|consensus
Probab=99.88 E-value=1.4e-22 Score=172.22 Aligned_cols=160 Identities=22% Similarity=0.286 Sum_probs=128.5
Q ss_pred CCcccCCCCCccccccccccchhHHHHHHhhhh-hcchhccchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy9206 11 GVEVKSTEGSPIKVQMKRKITLLGGVSIIVGCI-IGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTIGALCYAELGTC 89 (190)
Q Consensus 11 ~~~~~~~~~~~~~~~l~r~l~~~~~~~~~~~~~-ig~g~~~~~~~~~~~~G~~g~~~~~~li~~i~~~~~~~~~aEl~s~ 89 (190)
++|+++..+.++|||+||++++++.++.+++.+ .-.|+-.+-...+..+|+++ .+++|+++++..++++++++|++|+
T Consensus 31 ~~d~~~L~~lgYkqef~R~fs~~s~fg~sFs~~g~~~~i~tsm~~gl~~gG~~~-~vwgwlIa~~~~i~va~slaEl~Sa 109 (550)
T KOG1289|consen 31 DSDEELLAELGYKQELKREFSLFSIFGISFSLMGLLPGIATSMAYGLGSGGPPT-LVWGWLIAGFFSICVALSLAELCSA 109 (550)
T ss_pred cCCHHHHHHcCCchhhhhhhhHHHHHHHHHHHhcchhhhhhheeeccccCChHH-HHHHHHHHHHHHHHHHhHHHHHHhh
Confidence 334444556789999999999999999999988 22344444344455566654 7788999999999999999999999
Q ss_pred cccCcchHhhHHHH----hCchhHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhh---CCCCCCcHHHHHHHHHHHHHHH
Q psy9206 90 ISRSGGDYAYILVA----FGELPAFLRLWVALLIMRPTTQAIVALTFAQYAIKPF---FPDSELPDRAVLLLAAACLCKN 162 (190)
Q Consensus 90 ~P~~GG~y~~~~~~----~g~~~~~~~gw~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~~~ 162 (190)
+|++||.|.|+... ++|+.+|++||.+.+ ++....++..+..++.+++.. .|++.++.+++..+..++.++.
T Consensus 110 ~PtsGgLy~waa~lap~k~~~~~sw~~Gw~~~~-g~~~~~aSi~~S~A~~i~~~v~l~np~y~~~~~~~~~v~~ai~~v~ 188 (550)
T KOG1289|consen 110 MPTSGGLYFWAAVLAPPKYGPFASWVTGWLNYL-GQATGVASITYSLAQLILGAVSLTNPNYEPTNYHQFGVFEAILFVH 188 (550)
T ss_pred CCCCCcHHHHHHHhcCcchhhHHHHHHHHHHHH-HHHhhchhhhHHHHHHHHHHHhhcCCCCcccceEeehHHHHHHHHH
Confidence 99999999999775 889999999999999 777899999999999988753 5777778888777777777777
Q ss_pred HhhhhhhcCCC
Q psy9206 163 GNAIKPFFPDS 173 (190)
Q Consensus 163 ~~~~~~~~~~~ 173 (190)
. ++|....|+
T Consensus 189 ~-lln~~p~r~ 198 (550)
T KOG1289|consen 189 G-LLNSLPTRV 198 (550)
T ss_pred H-HHhcCCcHH
Confidence 6 777765444
No 4
>PRK15049 L-asparagine permease; Provisional
Probab=99.88 E-value=1.5e-21 Score=169.52 Aligned_cols=113 Identities=20% Similarity=0.282 Sum_probs=99.7
Q ss_pred cccccccccchhHHHHHHhhhhhcchhccchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhhcccCcchHhhHH
Q psy9206 22 IKVQMKRKITLLGGVSIIVGCIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTIGALCYAELGTCISRSGGDYAYIL 101 (190)
Q Consensus 22 ~~~~l~r~l~~~~~~~~~~~~~ig~g~~~~~~~~~~~~G~~g~~~~~~li~~i~~~~~~~~~aEl~s~~P~~GG~y~~~~ 101 (190)
+++++||+++.+++.++++|.++|+|+|..++..+..+|+. .+++|++++++.++++.+++||++++|++||+|+|++
T Consensus 22 ~~~~l~r~L~~~~~~~i~~G~~IGsGiF~~~g~~~~~aGp~--~il~~li~~i~~~~v~~slaELas~~P~aGg~y~y~~ 99 (499)
T PRK15049 22 HEEGYHKAMGNRQVQMIAIGGAIGTGLFLGAGARLQMAGPA--LALVYLICGLFSFFILRALGELVLHRPSSGSFVSYAR 99 (499)
T ss_pred CchhhhccCCHhHhHHHhhhccccchHHHhhHHHHHhcCCH--HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHH
Confidence 34469999999999999999999999999999999999875 5679999999999999999999999999999999999
Q ss_pred HHhCchhHHHHHHHHHHHHHhHHHHHHHHHHHHHhh
Q psy9206 102 VAFGELPAFLRLWVALLIMRPTTQAIVALTFAQYAI 137 (190)
Q Consensus 102 ~~~g~~~~~~~gw~~~~~~~~~~~a~~~~~~~~~~~ 137 (190)
+.+||..||++||.+|+ .|....+.+....+.+..
T Consensus 100 ~~~G~~~gf~~GW~~~l-~~~~~~~~~~~a~~~~~~ 134 (499)
T PRK15049 100 EFLGEKAAYVAGWMYFI-NWAMTGIVDITAVALYMH 134 (499)
T ss_pred HHhCcHhHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 99999999999999998 565555555555566554
No 5
>PRK10249 phenylalanine transporter; Provisional
Probab=99.88 E-value=2.5e-21 Score=166.46 Aligned_cols=119 Identities=18% Similarity=0.227 Sum_probs=104.9
Q ss_pred ccccccccccchhHHHHHHhhhhhcchhccchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhhcccCcchHhhH
Q psy9206 21 PIKVQMKRKITLLGGVSIIVGCIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTIGALCYAELGTCISRSGGDYAYI 100 (190)
Q Consensus 21 ~~~~~l~r~l~~~~~~~~~~~~~ig~g~~~~~~~~~~~~G~~g~~~~~~li~~i~~~~~~~~~aEl~s~~P~~GG~y~~~ 100 (190)
++++++||+++.+|+..+++|.++|+|+|..++..+..+|+. .+++|++++++.++++++++|+++++|++||.|+|+
T Consensus 14 ~~~~~l~r~l~~~~~~~i~ig~~IGsGif~~~g~~~~~aGp~--~~l~~li~~~~~~~~~~~~aEl~~~~P~~Gg~~~y~ 91 (458)
T PRK10249 14 NQEPTLHRGLHNRHIQLIALGGAIGTGLFLGIGPAIQMAGPA--VLLGYGVAGIIAFLIMRQLGEMVVEEPVSGSFAHFA 91 (458)
T ss_pred CCchhhhccCcHhHhhhhhhhcccchhHHHHHHHHHHhcCcH--HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHH
Confidence 344579999999999999999999999999999999988874 778999999999999999999999999999999999
Q ss_pred HHHhCchhHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhCCC
Q psy9206 101 LVAFGELPAFLRLWVALLIMRPTTQAIVALTFAQYAIKPFFPD 143 (190)
Q Consensus 101 ~~~~g~~~~~~~gw~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 143 (190)
++.+||..||.+||.+|+ .+....+.+....+.++.. ++|+
T Consensus 92 ~~~~g~~~gf~~gw~~~~-~~~~~~~~~~~a~~~~~~~-~~~~ 132 (458)
T PRK10249 92 YKYWGPFAGFLSGWNYWV-MFVLVGMAELTAAGIYMQY-WFPD 132 (458)
T ss_pred HHHhChHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH-cCCc
Confidence 999999999999999998 4545666677677777764 5553
No 6
>TIGR03428 ureacarb_perm permease, urea carboxylase system. A number of bacteria obtain nitrogen by biotin- and ATP-dependent urea degradation system distinct from urease. The two characterized proteins of this system are the enzymes urea carboxylase and allophanate hydrolase, but other, uncharacterized proteins co-occur as genes encoded nearby in multiple organisms. This family includes predicted permeases of the amino acid permease family, likely to transport either urea or a compound from which urea is derived. It is found so far only Actinobacteria, whereas a number of other species with the urea carboxylase have an adjacent ABC transporter operon.
Probab=99.87 E-value=2.6e-21 Score=167.06 Aligned_cols=162 Identities=18% Similarity=0.131 Sum_probs=123.9
Q ss_pred CCCccccccccccchhHHHHHHhhhh-hcchhccchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhhcccCcch
Q psy9206 18 EGSPIKVQMKRKITLLGGVSIIVGCI-IGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTIGALCYAELGTCISRSGGD 96 (190)
Q Consensus 18 ~~~~~~~~l~r~l~~~~~~~~~~~~~-ig~g~~~~~~~~~~~~G~~g~~~~~~li~~i~~~~~~~~~aEl~s~~P~~GG~ 96 (190)
++.+++|||||+++.++.++++++.+ ++.|++..++..+..+|+. .+++|+++++..++++++++||++++|++||+
T Consensus 3 ~~~g~~~~L~R~~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~Gp~--~~~~~li~~i~~l~~als~aEL~s~~P~aGG~ 80 (475)
T TIGR03428 3 QRFGYQPQLHRKLGRYASFAAGFSFVSILTTIFQLFGFGYGFGGPA--FFWTWPVVFVGQLLVALNFAELAARYPISGAI 80 (475)
T ss_pred hhcCCccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCcH--HHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCH
Confidence 45688999999999999999999986 7899999999988888873 78899999999999999999999999999999
Q ss_pred HhhHHHHhCchhHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhh--------CCCCC-C-cHHHHHHHHHHHHHHHHhhh
Q psy9206 97 YAYILVAFGELPAFLRLWVALLIMRPTTQAIVALTFAQYAIKPF--------FPDSE-L-PDRAVLLLAAACLCKNGNAI 166 (190)
Q Consensus 97 y~~~~~~~g~~~~~~~gw~~~~~~~~~~~a~~~~~~~~~~~~~~--------~~~~~-~-~~~~~~~~~~~~l~~~~~~~ 166 (190)
|+|+++.+||+.||++||.+++ ++....+........++...+ .+++. + +.++..++..+++++.+ ++
T Consensus 81 Y~~~~~~~g~~~gf~~gW~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i 158 (475)
T TIGR03428 81 YQWSRRMGGEVIGWFAGWFMII-AQIVTAAAAAIALQVVLPNIWSGFQIIGEDPTLTSPSGAANAVLLGSVLLVLTT-VI 158 (475)
T ss_pred HHHHHHHcCccccHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhhhhhcccCccccCCCchHHHHHHHHHHHHHHH-HH
Confidence 9999999999999999999998 555556655555554443211 11121 1 12444555555555555 67
Q ss_pred hhhcCCCCchhHHHHHHHH
Q psy9206 167 KPFFPDSELPDRAVLLLAA 185 (190)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~ 185 (190)
|.+.. +..+++|.+.+.
T Consensus 159 n~~g~--k~~~~i~~~~~~ 175 (475)
T TIGR03428 159 NCIGV--EWMSRVNTIGVT 175 (475)
T ss_pred HHhhh--hHHHHHHHHHHH
Confidence 77643 445777665543
No 7
>PRK10238 aromatic amino acid transporter; Provisional
Probab=99.86 E-value=9.8e-21 Score=162.74 Aligned_cols=118 Identities=18% Similarity=0.284 Sum_probs=106.8
Q ss_pred cccccccccchhHHHHHHhhhhhcchhccchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhhcccCcchHhhHH
Q psy9206 22 IKVQMKRKITLLGGVSIIVGCIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTIGALCYAELGTCISRSGGDYAYIL 101 (190)
Q Consensus 22 ~~~~l~r~l~~~~~~~~~~~~~ig~g~~~~~~~~~~~~G~~g~~~~~~li~~i~~~~~~~~~aEl~s~~P~~GG~y~~~~ 101 (190)
+++++||+++.+|+..++++.++|+|+|..++.....+|+ + .+++|+++++..++++++++|+++++|.+||+|+|++
T Consensus 6 ~~~~l~r~L~~~~~~~i~ig~~IGsGif~~~g~~~~~~Gp-~-~i~~~~i~gi~~~~v~~s~aEl~s~~P~aGg~y~~~~ 83 (456)
T PRK10238 6 HGEQLKRGLKNRHIQLIALGGAIGTGLFLGSASVIQSAGP-G-IILGYAIAGFIAFLIMRQLGEMVVEEPVAGSFSHFAY 83 (456)
T ss_pred cchhhhccCcHHHHHHHHhhccccchHHHhhHHHHHhcCc-H-HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHH
Confidence 3346999999999999999999999999999999999886 4 7889999999999999999999999999999999999
Q ss_pred HHhCchhHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhCCC
Q psy9206 102 VAFGELPAFLRLWVALLIMRPTTQAIVALTFAQYAIKPFFPD 143 (190)
Q Consensus 102 ~~~g~~~~~~~gw~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 143 (190)
+.+||..||++||.+|+ .+....+++...+++++.. ++|+
T Consensus 84 ~~~g~~~gf~~Gw~~~~-~~~~~~~~~~~~~~~~~~~-~~p~ 123 (456)
T PRK10238 84 KYWGSFAGFASGWNYWV-LYVLVAMAELTAVGKYIQF-WYPE 123 (456)
T ss_pred HHcCcHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH-hcCc
Confidence 99999999999999999 5667778888888888874 5553
No 8
>PRK11387 S-methylmethionine transporter; Provisional
Probab=99.86 E-value=1.3e-20 Score=162.48 Aligned_cols=116 Identities=19% Similarity=0.357 Sum_probs=102.2
Q ss_pred cccccccchhHHHHHHhhhhhcchhccchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhhcccCcchHhhHHHH
Q psy9206 24 VQMKRKITLLGGVSIIVGCIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTIGALCYAELGTCISRSGGDYAYILVA 103 (190)
Q Consensus 24 ~~l~r~l~~~~~~~~~~~~~ig~g~~~~~~~~~~~~G~~g~~~~~~li~~i~~~~~~~~~aEl~s~~P~~GG~y~~~~~~ 103 (190)
+++||+++.+++.++++|.++|+|+|..++.++..+|+.+ .+++|++++++.++++++++||++++|++||.|.|+++.
T Consensus 10 ~~l~r~L~~~~~~~l~ig~~IG~Gif~~~g~~~~~~G~~~-~~l~~~i~~~~~~~~~~~~aELas~~P~aGG~y~y~~~~ 88 (471)
T PRK11387 10 GQFKRTMKVRHLVMLSLGGVIGTGLFFNTGYIISTTGAAG-TLLAYLIGALVVYLVMQCLGELSVAMPETGAFHVYAARY 88 (471)
T ss_pred hhhhhcCcHHHHHHHHHHhhhhhHHHHHHHHHHHHhCcHH-HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHh
Confidence 4699999999999999999999999999999998888754 678899999999999999999999999999999999999
Q ss_pred hCchhHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhCC
Q psy9206 104 FGELPAFLRLWVALLIMRPTTQAIVALTFAQYAIKPFFP 142 (190)
Q Consensus 104 ~g~~~~~~~gw~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 142 (190)
+||..||.+||.+|+ .+....++.....+.++.. ++|
T Consensus 89 ~g~~~gf~~gw~~~~-~~~~~~~~~~~~~~~~~~~-~~p 125 (471)
T PRK11387 89 LGPATGYTVAWLYWL-TWTVALGSSLTAAGFCMQY-WFP 125 (471)
T ss_pred cChHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHh-ccC
Confidence 999999999999998 5656666666666655543 445
No 9
>TIGR01773 GABAperm gamma-aminobutyrate permease. GabP is highly homologous to amino acid permeases from B. subtilis, E. coli, as well as to other members of the amino acid permease family (pfam00324). A member of the APC (amine-polyamine-choline) transporter superfamily, GABA permease possesses a "consensus amphiphatic region" (CAR) found to be evolutionarily conserved within this transport family. This amphiphatic region is located between helix 8 and cytoplasmic loop 8-9, forming a potential channel domain and suggested to play a significant role in ligand recognition and translocation. Unique to GABA permeases, a conserved cysteine residue (CYS-300, E.coli) located at the beginning of the amphiphatic domain, has been determined to be critical for catalytic specificity.
Probab=99.86 E-value=3e-20 Score=159.45 Aligned_cols=150 Identities=15% Similarity=0.211 Sum_probs=120.1
Q ss_pred ccccccccccchhHHHHHHhhhhhcchhccchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhhcccCcchHhhH
Q psy9206 21 PIKVQMKRKITLLGGVSIIVGCIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTIGALCYAELGTCISRSGGDYAYI 100 (190)
Q Consensus 21 ~~~~~l~r~l~~~~~~~~~~~~~ig~g~~~~~~~~~~~~G~~g~~~~~~li~~i~~~~~~~~~aEl~s~~P~~GG~y~~~ 100 (190)
+.+.++||+++.+|+.+++++.++|+|+|..++.....+|+. .+++|++++++.++++++++|+++++|++||+|.|+
T Consensus 5 ~~~~~~~~~L~~~~~~~i~ig~~IGsGif~~~g~~~~~~G~~--~~i~~~i~~v~~~~~a~~~aEl~s~~P~~Gg~~~~~ 82 (452)
T TIGR01773 5 QSGLKLPNGLKTRHVTMLSIAGVIGAGLFVGSGSAIASAGPA--ALLAYLLAGLLVVFIMRMLGEMAVANPDTGSFSTYA 82 (452)
T ss_pred cchHhHhCcCcHHHHHHHHHhhhhhchHHHhhHHHHHhcCCH--HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHH
Confidence 335569999999999999999999999999999999998874 567999999999999999999999999999999999
Q ss_pred HHHhCchhHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhCCCCCCcHHHHHHHHHHHHHHHHhhhhhhcCCCCchhHHH
Q psy9206 101 LVAFGELPAFLRLWVALLIMRPTTQAIVALTFAQYAIKPFFPDSELPDRAVLLLAAACLCKNGNAIKPFFPDSELPDRAV 180 (190)
Q Consensus 101 ~~~~g~~~~~~~gw~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 180 (190)
++.+||+.||++||.+|+ .+....+++....++++.. ++|+ .+.+ .+..+++++++ .+|.+..| ..++.|
T Consensus 83 ~~~~g~~~gf~~gw~~~~-~~~~~~~~~~~~~~~~l~~-~~~~--~~~~---~~~~~~~~~~~-~~n~~gv~--~~~~~~ 152 (452)
T TIGR01773 83 DDAIGRWAGFTIGWLYWW-FWVLVIPLEAIAAAGILQY-WFPD--IPLW---LFSLILTIVLT-LTNLYSVK--SYGEFE 152 (452)
T ss_pred HHHhCcHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH-hcCc--CcHH---HHHHHHHHHHH-HHHHHhcc--hhhHHH
Confidence 999999999999999999 6767888888888888875 5554 2333 23333333333 55665433 334444
Q ss_pred HH
Q psy9206 181 LL 182 (190)
Q Consensus 181 ~~ 182 (190)
..
T Consensus 153 ~~ 154 (452)
T TIGR01773 153 FW 154 (452)
T ss_pred HH
Confidence 43
No 10
>PRK10746 putative transport protein YifK; Provisional
Probab=99.85 E-value=3.7e-20 Score=159.37 Aligned_cols=118 Identities=18% Similarity=0.238 Sum_probs=106.8
Q ss_pred cccccccccchhHHHHHHhhhhhcchhccchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhhcccCcchHhhHH
Q psy9206 22 IKVQMKRKITLLGGVSIIVGCIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTIGALCYAELGTCISRSGGDYAYIL 101 (190)
Q Consensus 22 ~~~~l~r~l~~~~~~~~~~~~~ig~g~~~~~~~~~~~~G~~g~~~~~~li~~i~~~~~~~~~aEl~s~~P~~GG~y~~~~ 101 (190)
.++++||+++.+|+..+++|.++|+|+|..++..+..+|+. .+++|++++++.++++.+++||++++|++||.|+|++
T Consensus 4 ~~~~l~r~L~~~~~~~i~ig~~IGtGlf~~~g~~l~~aGp~--~~l~~~i~g~~~~~v~~~~aEl~~~~P~sGg~~~y~~ 81 (461)
T PRK10746 4 NKPELQRGLEARHIELIALGGTIGVGLFMGAASTLKWAGPS--VLLAYIIAGLFVFFIMRSMGEMLFLEPVTGSFAVYAH 81 (461)
T ss_pred CchHHhccCcHHHHHHHHHHhhhhhhHHHHhHHHHHhcChH--HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHH
Confidence 45679999999999999999999999999999999998873 7789999999999999999999999999999999999
Q ss_pred HHhCchhHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhCCC
Q psy9206 102 VAFGELPAFLRLWVALLIMRPTTQAIVALTFAQYAIKPFFPD 143 (190)
Q Consensus 102 ~~~g~~~~~~~gw~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 143 (190)
|.+||..||.+||.+|+ .+....+.+....+.++.. ++|.
T Consensus 82 ~~~g~~~Gf~~gw~~~~-~~~~~~~~~~~a~~~~l~~-~~p~ 121 (461)
T PRK10746 82 RYMSPFFGYLTAWSYWF-MWMAVGISEITAIGVYVQF-WFPE 121 (461)
T ss_pred HHhCcHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH-ccCC
Confidence 99999999999999999 5666777777788888875 6564
No 11
>PRK10836 lysine transporter; Provisional
Probab=99.85 E-value=6.3e-20 Score=159.00 Aligned_cols=117 Identities=21% Similarity=0.292 Sum_probs=100.3
Q ss_pred cccccccchhHHHHHHhhhhhcchhccchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhhcccCcchHhhHHHH
Q psy9206 24 VQMKRKITLLGGVSIIVGCIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTIGALCYAELGTCISRSGGDYAYILVA 103 (190)
Q Consensus 24 ~~l~r~l~~~~~~~~~~~~~ig~g~~~~~~~~~~~~G~~g~~~~~~li~~i~~~~~~~~~aEl~s~~P~~GG~y~~~~~~ 103 (190)
+++||+++.++++++++|.++|+|+|..++..+..+|+.+ .+++|++++++.++++++++|+++++|++||.|+|+++.
T Consensus 11 ~~l~r~L~~~~~~~l~vG~~IGsGif~~~g~~~~~aGp~~-~l~a~~i~g~~~~~~al~~aEL~s~~P~sGg~y~y~~~~ 89 (489)
T PRK10836 11 PGLRRELKARHLTMIAIGGSIGTGLFVASGATISQAGPGG-ALLSYMLIGLMVYFLMTSLGELAAYMPVSGSFATYGQNY 89 (489)
T ss_pred ccccccCcHHHHHHHHHhhhhhhhhhHhhhHHHHhcCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH
Confidence 5689999999999999999999999999999999988743 788999999999999999999999999999999999999
Q ss_pred hCchhHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhCCC
Q psy9206 104 FGELPAFLRLWVALLIMRPTTQAIVALTFAQYAIKPFFPD 143 (190)
Q Consensus 104 ~g~~~~~~~gw~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 143 (190)
+||..||.+||.+|+ .++...+.+.... .++.+.++|+
T Consensus 90 ~g~~~gf~~Gw~~~~-~~~~~~a~~~~a~-~~~~~~~~~~ 127 (489)
T PRK10836 90 VEEGFGFALGWNYWY-NWAVTIAVDLVAA-QLVMSWWFPD 127 (489)
T ss_pred cChHHHHHHHHHHHH-HHHHHHHHHHHHH-HHHhhhcCCC
Confidence 999999999999998 5655555443333 3333335453
No 12
>PRK11357 frlA putative fructoselysine transporter; Provisional
Probab=99.85 E-value=8e-20 Score=156.57 Aligned_cols=156 Identities=24% Similarity=0.289 Sum_probs=121.7
Q ss_pred ccccccccchhHHHHHHhhhhhcchhccchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhhcccCcchHhhHHH
Q psy9206 23 KVQMKRKITLLGGVSIIVGCIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTIGALCYAELGTCISRSGGDYAYILV 102 (190)
Q Consensus 23 ~~~l~r~l~~~~~~~~~~~~~ig~g~~~~~~~~~~~~G~~g~~~~~~li~~i~~~~~~~~~aEl~s~~P~~GG~y~~~~~ 102 (190)
++++||++++++.++++++.++|+|++..++......|+++..+++|++++++.++.+++++|+++++|++||+|.|+++
T Consensus 3 ~~~L~r~l~~~~~~~l~vg~~ig~Gif~~~g~~~~~~G~~~~~~l~~li~~v~~l~~al~~aEl~s~~P~~GG~y~y~~~ 82 (445)
T PRK11357 3 SQELQRKLGFWAVLAIAVGTTVGSGIFVSVGEVAKAAGTPWLTVLAFVIGGLIVIPQMCVYAELSTAYPENGADYVYLKN 82 (445)
T ss_pred cccccccccHHHHHHHHHHhheechhccchHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCceeeHHH
Confidence 46799999999999999999999999999988887778765577889999999999999999999999999999999999
Q ss_pred HhCchhHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhCCCCCCcHHHHHHHHHHHHHHHHhhhhhhcCCCCchhHHHHH
Q psy9206 103 AFGELPAFLRLWVALLIMRPTTQAIVALTFAQYAIKPFFPDSELPDRAVLLLAAACLCKNGNAIKPFFPDSELPDRAVLL 182 (190)
Q Consensus 103 ~~g~~~~~~~gw~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 182 (190)
.+||..||+++|..++.......+..+..+++++.. +.|. +......+..+++.+++ .+|... .+..++.|.+
T Consensus 83 ~~g~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~-~~~~---~~~~~~~~~~~~~~~~~-~ln~~g--v~~~~~v~~~ 155 (445)
T PRK11357 83 AGSRPLAFLSGWASFWANDAPSLSIMALAIVSNLGF-LTPI---DPLLGKFIAAGLIIAFM-LLHLRS--VEGGAAFQTL 155 (445)
T ss_pred hcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCC---chHHHHHHHHHHHHHHH-HHHHhh--hhHHHHHHHH
Confidence 999999999999865434455677778888888764 4332 12233444444444444 455553 4555777666
Q ss_pred HHH
Q psy9206 183 LAA 185 (190)
Q Consensus 183 ~~~ 185 (190)
++.
T Consensus 156 ~~~ 158 (445)
T PRK11357 156 ITI 158 (445)
T ss_pred HHH
Confidence 553
No 13
>PRK10644 arginine:agmatin antiporter; Provisional
Probab=99.84 E-value=7.9e-20 Score=156.63 Aligned_cols=153 Identities=19% Similarity=0.255 Sum_probs=115.8
Q ss_pred cccccccchhHHHHHHhhhhhcchhccchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhhcccCcchHhhHHHH
Q psy9206 24 VQMKRKITLLGGVSIIVGCIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTIGALCYAELGTCISRSGGDYAYILVA 103 (190)
Q Consensus 24 ~~l~r~l~~~~~~~~~~~~~ig~g~~~~~~~~~~~~G~~g~~~~~~li~~i~~~~~~~~~aEl~s~~P~~GG~y~~~~~~ 103 (190)
++++|++++++.+++.++.++|+|+|..++..... |+ +.+++|+++++..++.+++++|+++++|++||+|+|+++.
T Consensus 4 ~~~~~~lg~~~~~~l~vg~~iGsGif~~~~~~a~~-g~--~~~~~~~i~~~~~l~~al~~aEL~s~~P~aGG~y~~~~~~ 80 (445)
T PRK10644 4 DADAHKVGLIPVTLMVAGNIMGSGVFLLPANLAST-GG--IAIYGWLVTIIGALGLSMVYAKMSSLDPSPGGSYAYARRC 80 (445)
T ss_pred CccCCCcCHHHHHHHHHhhHhhhHHHhhHHHHHHH-HH--HHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCChhHHHHHH
Confidence 34789999999999999999999999998886554 42 3678899999999999999999999999999999999999
Q ss_pred hCchhHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhCCCCCCcHHHHHHHHHHHHHHHHhhhhhhcCCCCchhHHHHHH
Q psy9206 104 FGELPAFLRLWVALLIMRPTTQAIVALTFAQYAIKPFFPDSELPDRAVLLLAAACLCKNGNAIKPFFPDSELPDRAVLLL 183 (190)
Q Consensus 104 ~g~~~~~~~gw~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 183 (190)
+||+.||++||.+|+..+ ............+... ++|..+ +.+...++..+++++++ .+|.+. .+..++.|.++
T Consensus 81 ~g~~~gf~~gw~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~-~ln~~g--vk~~~~i~~i~ 154 (445)
T PRK10644 81 FGPFLGYQTNVLYWLACW-IGNIAMVVIGVGYLSY-FFPILK-DPLVLTITCVVVLWIFV-LLNIVG--PKMITRVQAVA 154 (445)
T ss_pred cCchHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH-HhcccC-CcHHHHHHHHHHHHHHH-HHHHhc--hHHHHHHHHHH
Confidence 999999999999998433 3444444445566654 555332 33444455555555555 666664 34557776665
Q ss_pred HH
Q psy9206 184 AA 185 (190)
Q Consensus 184 ~~ 185 (190)
+.
T Consensus 155 ~~ 156 (445)
T PRK10644 155 TV 156 (445)
T ss_pred HH
Confidence 54
No 14
>PRK10580 proY putative proline-specific permease; Provisional
Probab=99.84 E-value=1.3e-19 Score=155.71 Aligned_cols=117 Identities=17% Similarity=0.271 Sum_probs=104.3
Q ss_pred ccccccccchhHHHHHHhhhhhcchhccchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhhcccCcchHhhHHH
Q psy9206 23 KVQMKRKITLLGGVSIIVGCIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTIGALCYAELGTCISRSGGDYAYILV 102 (190)
Q Consensus 23 ~~~l~r~l~~~~~~~~~~~~~ig~g~~~~~~~~~~~~G~~g~~~~~~li~~i~~~~~~~~~aEl~s~~P~~GG~y~~~~~ 102 (190)
++++||+++.++++++++|.++|+|++..++.....+|+. .+++|+++++..++++++++|+++++|++||.|.|+++
T Consensus 4 ~~~l~r~L~~~~~~~i~vg~~IG~Gif~~~g~~~~~aG~~--~~l~~~i~~i~~~~~a~~~aEl~s~~P~~Gg~y~y~~~ 81 (457)
T PRK10580 4 KNKLKRGLSTRHIRFMALGSAIGTGLFYGSADAIKMAGPS--VLLAYIIGGVAAYIIMRALGEMSVHNPAASSFSRYAQE 81 (457)
T ss_pred CccccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhChH--HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 4679999999999999999999999999999988888864 68899999999999999999999999999999999999
Q ss_pred HhCchhHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhCCC
Q psy9206 103 AFGELPAFLRLWVALLIMRPTTQAIVALTFAQYAIKPFFPD 143 (190)
Q Consensus 103 ~~g~~~~~~~gw~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 143 (190)
.+||..||++||.+++ .+....+.+...++.++.. ++|.
T Consensus 82 ~~G~~~gf~~gw~~~~-~~~~~~~~~~~~~~~~~~~-~~~~ 120 (457)
T PRK10580 82 NLGPLAGYITGWTYCF-EILIVAIADVTAFGIYMGV-WFPT 120 (457)
T ss_pred HcCcHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH-hCCC
Confidence 9999999999999998 5656666667777877764 5553
No 15
>TIGR00906 2A0303 cationic amino acid transport permease.
Probab=99.83 E-value=1.4e-19 Score=158.92 Aligned_cols=158 Identities=23% Similarity=0.376 Sum_probs=120.6
Q ss_pred ccccccccchhHHHHHHhhhhhcchhccchHHHHH-hcccchHHHHHHHHHHHHHHHHHHHHHHhhhhcccCcchHhhHH
Q psy9206 23 KVQMKRKITLLGGVSIIVGCIIGSGIFVSPAGVLA-ETQSVGLSIVIWTVCGLLSTIGALCYAELGTCISRSGGDYAYIL 101 (190)
Q Consensus 23 ~~~l~r~l~~~~~~~~~~~~~ig~g~~~~~~~~~~-~~G~~g~~~~~~li~~i~~~~~~~~~aEl~s~~P~~GG~y~~~~ 101 (190)
+++++|+++.+|+++++++.++|+|+|..++.... .+|+. .+++|+++++..++.+++++|+++++|++||.|+|++
T Consensus 23 ~~~L~r~L~~~~l~~l~ig~viGsGIf~l~g~~a~~~aGp~--~~ls~liagv~~l~~al~yaElas~~P~sGg~Y~y~~ 100 (557)
T TIGR00906 23 ESKMKRCLTTWDLMALGIGSTIGAGIYVLTGEVARNDSGPA--IVLSFLISGLAAVLSGFCYAEFGARVPKAGSAYLYSY 100 (557)
T ss_pred ccchhhcCCHHHHHHHHhhhhhcchhhhhhhHHHHhccCcH--HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcceeeHH
Confidence 45799999999999999999999999999888764 45653 6778999999999999999999999999999999999
Q ss_pred HHhCchhHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhCC----------CCCCcH--HHHHHHHHHHHHHHHhhhhhh
Q psy9206 102 VAFGELPAFLRLWVALLIMRPTTQAIVALTFAQYAIKPFFP----------DSELPD--RAVLLLAAACLCKNGNAIKPF 169 (190)
Q Consensus 102 ~~~g~~~~~~~gw~~~~~~~~~~~a~~~~~~~~~~~~~~~~----------~~~~~~--~~~~~~~~~~l~~~~~~~~~~ 169 (190)
+.+|+++||++||.+++ .+....+..+...+.|+...+.. ..+.+. ....+++.+++++++ .+|.+
T Consensus 101 ~~~G~~~gfi~GW~~~l-~~~~~~a~va~~~s~yl~~ll~~~~~~~~~~~~~~~~~~l~~~~~~~a~~ii~l~~-~ln~~ 178 (557)
T TIGR00906 101 VTVGELWAFITGWNLIL-EYVIGTAAVARSWSAYFDELLNKQIGQFRRTYFKLNYDGLAEYPDFFAVCLILLLA-VLLSF 178 (557)
T ss_pred HHhCcHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhhccccccccccccCCcccccchHHHHHHHHHHH-HHHHh
Confidence 99999999999999998 56677888888888877653210 000010 112234444444444 55665
Q ss_pred cCCCCchhHHHHHHHHH
Q psy9206 170 FPDSELPDRAVLLLAAA 186 (190)
Q Consensus 170 ~~~~~~~~~~~~~~~~~ 186 (190)
..+..+++|.+++.+
T Consensus 179 --Gik~s~~v~~i~~~i 193 (557)
T TIGR00906 179 --GVKESAWVNKIFTAI 193 (557)
T ss_pred --chhHHHHHHHHHHHH
Confidence 345667777776654
No 16
>TIGR00907 2A0304 amino acid permease (GABA permease).
Probab=99.83 E-value=1e-19 Score=157.31 Aligned_cols=151 Identities=18% Similarity=0.171 Sum_probs=118.1
Q ss_pred CCccccccccccchhHHHHHHhhhhh-cchhccchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhhcccCcchH
Q psy9206 19 GSPIKVQMKRKITLLGGVSIIVGCII-GSGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTIGALCYAELGTCISRSGGDY 97 (190)
Q Consensus 19 ~~~~~~~l~r~l~~~~~~~~~~~~~i-g~g~~~~~~~~~~~~G~~g~~~~~~li~~i~~~~~~~~~aEl~s~~P~~GG~y 97 (190)
+.+++|++||+++.+++++++++.+. +.|++.........+|+.+ .+++|++++++.++++++++||++++|++||+|
T Consensus 3 ~~g~~~~l~r~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~Gp~~-~i~~~~i~gi~~l~~~~~~aEl~s~~P~~Gg~y 81 (482)
T TIGR00907 3 ALGYKPELKREFSLWSIFGFAFSISNSWTGISTTYNYGLSSGGAMS-IVWGWIIAGAGSICIALSLAELSSAYPTSGGQY 81 (482)
T ss_pred ccCCcceeecccchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCccc-hhHHHHHHHHHHHHHHHHHHHHHhhCCCCccHH
Confidence 45788999999999999999999762 3677777666666777654 678999999999999999999999999999999
Q ss_pred hhHHHHhC----chhHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhh---CCC--CCCcHHHHHHHHHHHHHHHHhhhhh
Q psy9206 98 AYILVAFG----ELPAFLRLWVALLIMRPTTQAIVALTFAQYAIKPF---FPD--SELPDRAVLLLAAACLCKNGNAIKP 168 (190)
Q Consensus 98 ~~~~~~~g----~~~~~~~gw~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~--~~~~~~~~~~~~~~~l~~~~~~~~~ 168 (190)
+|+++.+| +..+|++||.+++ ++....++.....++++...+ .+. +.++.|....+..+++++++ .+|.
T Consensus 82 ~~~~~~~g~~~g~~~~f~~gW~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~in~ 159 (482)
T TIGR00907 82 FWSAKLAPPRQMPFASWMTGWFNLA-GQVAGTASTDLSVAQLILGIVSLTTPGREYIPTRWHIFGIMIGIHLIHA-LINS 159 (482)
T ss_pred HHHHHhcccccccceeHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhcCCCCCccccCchhhhhHHHHHHHHH-HHHH
Confidence 99999876 6889999999998 666777778888887776532 222 33445555556665666555 6777
Q ss_pred hcCC
Q psy9206 169 FFPD 172 (190)
Q Consensus 169 ~~~~ 172 (190)
+..|
T Consensus 160 ~g~k 163 (482)
T TIGR00907 160 LPTK 163 (482)
T ss_pred hhHh
Confidence 6544
No 17
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family. This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions.
Probab=99.83 E-value=1.3e-19 Score=156.50 Aligned_cols=156 Identities=22% Similarity=0.232 Sum_probs=118.4
Q ss_pred ccccccchhHHHHHHhhhhhcchhccchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhhccc-CcchHhhHHHH
Q psy9206 25 QMKRKITLLGGVSIIVGCIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTIGALCYAELGTCISR-SGGDYAYILVA 103 (190)
Q Consensus 25 ~l~r~l~~~~~~~~~~~~~ig~g~~~~~~~~~~~~G~~g~~~~~~li~~i~~~~~~~~~aEl~s~~P~-~GG~y~~~~~~ 103 (190)
+++|++++++..++.++.++|+|++..++.....+|+. ..+++|+++++..++.+++++|+++++|+ +||.|+|+++.
T Consensus 4 ~~~~~l~~~~~~~l~ig~vIGsGif~~~~~~~~~~g~~-~~~~~wli~~~~~~~~al~~aEl~s~~P~~sGG~y~y~~~~ 82 (473)
T TIGR00905 4 AKSKKLGLFALTALVIGSMIGSGIFSLPQNLASVAGPG-AVIIGWIITGVGMLALAFVFAILATKKPELDGGIYAYAREG 82 (473)
T ss_pred ccCCCccHHHHHHHHHHHHHhHHHHHhHHHHHHhcchH-HHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCChhhhHHhH
Confidence 35789999999999999999999999998877665543 36788999999999999999999999999 99999999999
Q ss_pred hCchhHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhCCCCC-CcHHHHHHHHHHHHHHHHhhhhhhcCCCCchhHHHHH
Q psy9206 104 FGELPAFLRLWVALLIMRPTTQAIVALTFAQYAIKPFFPDSE-LPDRAVLLLAAACLCKNGNAIKPFFPDSELPDRAVLL 182 (190)
Q Consensus 104 ~g~~~~~~~gw~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 182 (190)
+||+.||++||.+|+ .+.......+..+.+++.. ++|... .+.+...+....++++++ .+|... .+..+|.|.+
T Consensus 83 ~G~~~gf~~gw~~~~-~~~~~~~~~~~~~~~~l~~-~~p~~~~~~~~~~~~~~~~~~~~~~-~ln~~G--i~~~~~i~~~ 157 (473)
T TIGR00905 83 FGPYIGFMSGWGYWL-SAWIGNVAYAVLLFSALGY-FFPLFGSGNPVPSILGASVLLWVFT-FLVLRG--VRQAAFINTI 157 (473)
T ss_pred cccccHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH-HhhhhcCCCcHHHHHHHHHHHHHHH-HHHHhC--HHHHHHHHHH
Confidence 999999999999997 4445555566666667664 555322 123333444444444444 566654 4556777777
Q ss_pred HHHH
Q psy9206 183 LAAA 186 (190)
Q Consensus 183 ~~~~ 186 (190)
.+.+
T Consensus 158 ~~~~ 161 (473)
T TIGR00905 158 TTIA 161 (473)
T ss_pred HHHH
Confidence 6644
No 18
>PRK10655 potE putrescine transporter; Provisional
Probab=99.83 E-value=2.5e-19 Score=153.17 Aligned_cols=151 Identities=19% Similarity=0.230 Sum_probs=116.1
Q ss_pred cccccchhHHHHHHhhhhhcchhccchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhhcccCcchHhhHHHHhC
Q psy9206 26 MKRKITLLGGVSIIVGCIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTIGALCYAELGTCISRSGGDYAYILVAFG 105 (190)
Q Consensus 26 l~r~l~~~~~~~~~~~~~ig~g~~~~~~~~~~~~G~~g~~~~~~li~~i~~~~~~~~~aEl~s~~P~~GG~y~~~~~~~g 105 (190)
+||++++++.+++.++.++|+|++..++... ..|+. .+++|++++++.++.+++++|+++++|++||.|.|+++.+|
T Consensus 4 ~~~~l~~~~~~~l~vg~~iGsGif~~p~~~~-~~G~~--~~~~w~i~~~~~~~~a~~~aeL~~~~P~~GG~y~y~~~~~G 80 (438)
T PRK10655 4 KSNKMGVVQLTILTAVNMMGSGIIMLPTKLA-QVGTI--SILSWLVTAVGSMALAYAFAKCGMFSRKSGGMGGYAEYAFG 80 (438)
T ss_pred ccCcccHHHHHHHHHHhhhhhHHHHhHHHHH-HhhHH--HHHHHHHHHHHHHHHHHHHHHHhhhCCCCCchHHHHHHHcC
Confidence 5788999999999999999999999987754 55653 67789999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhCCCCCCcHHHHHHHHHHHHHHHHhhhhhhcCCCCchhHHHHHHHH
Q psy9206 106 ELPAFLRLWVALLIMRPTTQAIVALTFAQYAIKPFFPDSELPDRAVLLLAAACLCKNGNAIKPFFPDSELPDRAVLLLAA 185 (190)
Q Consensus 106 ~~~~~~~gw~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (190)
|+.||++||.+|+. +.......+.....|+.. ++|. +.+.+...++..+++++++ .+|... .+..++.|.+.+.
T Consensus 81 ~~~gf~~gw~~~~~-~~~~~~~~a~~~~~y~~~-~~~~-~~~~~~~~~~~~~~l~~~~-~ln~~g--~~~~~~i~~i~~~ 154 (438)
T PRK10655 81 KSGNFMANYTYGVS-LLIANVAIAISAVGYGTE-LFGA-TLSPVQICLATIGVLWLCT-VANFGG--ARITGQISSVTVW 154 (438)
T ss_pred cchHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH-hccc-ccchHHHHHHHHHHHHHHH-HHHHhC--HHHHHHHHHHHHH
Confidence 99999999999983 434444445666677765 4453 3334444455555555555 566664 3456777765543
No 19
>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism]
Probab=99.82 E-value=2.7e-19 Score=152.59 Aligned_cols=147 Identities=18% Similarity=0.227 Sum_probs=127.2
Q ss_pred ccccccchhHHHHHHhhhhhcchhccchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhhcccCcchHhhHHHHh
Q psy9206 25 QMKRKITLLGGVSIIVGCIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTIGALCYAELGTCISRSGGDYAYILVAF 104 (190)
Q Consensus 25 ~l~r~l~~~~~~~~~~~~~ig~g~~~~~~~~~~~~G~~g~~~~~~li~~i~~~~~~~~~aEl~s~~P~~GG~y~~~~~~~ 104 (190)
++||+|+.+|+.++++|..||+|.|..++..+.++||.| .+++|++.+++..++..++.||++.+|.+|+...|+.|..
T Consensus 41 ~lkR~LK~RHl~MIAiGG~IGTGLfvgsG~~l~~aGP~g-~li~y~i~G~~vy~vm~sLGEma~~~P~sGsF~~ya~rfv 119 (541)
T COG0833 41 ELKRSLKSRHLQMIAIGGAIGTGLFVGSGKALSQAGPAG-LLIAYLIIGIMVYFVMQSLGELAVFYPVSGSFSTYATRFV 119 (541)
T ss_pred hhhhhhhHHHHHHHHhccccccceeeecchhhhccCcHH-HHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchhhhhhhhc
Confidence 599999999999999999999999999999999999876 8889999999999999999999999999999999999999
Q ss_pred CchhHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhCCCCCCcHHHHHHHHHHHHHHHHhhhhhhcCCCCc
Q psy9206 105 GELPAFLRLWVALLIMRPTTQAIVALTFAQYAIKPFFPDSELPDRAVLLLAAACLCKNGNAIKPFFPDSEL 175 (190)
Q Consensus 105 g~~~~~~~gw~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 175 (190)
+|-+||..||+||+ .|....+.+..+.+..++. ++|+. .+.+.+..+..+++++++.+-.+.+.+.||
T Consensus 120 dpa~GFa~gWnYw~-~w~v~~~~El~aa~~vi~y-W~p~~-v~~~~w~~iF~~~i~~iN~~~Vk~fGE~Ef 187 (541)
T COG0833 120 DPAFGFALGWNYWL-NWAVTLPLELTAASLVIQY-WFPDT-VPPWIWIAIFLVLIFLLNLFGVKGFGETEF 187 (541)
T ss_pred CchHHHHHHHHHHH-HHHHHhhHHHHHHHHhhhh-hcCCC-CChHHHHHHHHHHHHHHHHhcccccceehH
Confidence 99999999999999 7889999998888887774 66654 355555555555566666556666666664
No 20
>TIGR00908 2A0305 ethanolamine permease. The three genes used as the seed for this model (from Burkholderia pseudomallei, Pseudomonas aeruginosa and Clostridium acetobutylicum are all adjacent to genes for the catabolism of ethanolamine. Most if not all of the hits to this model have a similar arrangement of genes. This group is a member of the Amino Acid-Polyamine-Organocation (APC) Superfamily.
Probab=99.81 E-value=6e-19 Score=151.00 Aligned_cols=152 Identities=21% Similarity=0.178 Sum_probs=117.1
Q ss_pred cccccccccchhHHHHHHhhhhhcchhccchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhhcccCcchHhhHH
Q psy9206 22 IKVQMKRKITLLGGVSIIVGCIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTIGALCYAELGTCISRSGGDYAYIL 101 (190)
Q Consensus 22 ~~~~l~r~l~~~~~~~~~~~~~ig~g~~~~~~~~~~~~G~~g~~~~~~li~~i~~~~~~~~~aEl~s~~P~~GG~y~~~~ 101 (190)
+|+++||++++++.++++++.++| |.+...+.....+|+.+ .+++|++++++.++++++++|+++++|++||.|+|++
T Consensus 1 ~~~~l~r~l~~~~~~~l~~~~~ig-g~~~~~~~~~~~~G~~~-~~~~~~i~~~~~~~~a~~~aEl~s~~P~~Gg~y~~~~ 78 (442)
T TIGR00908 1 QHRQLKKTLATWQLWGIGVGYVIS-GDYAGWNFGLAQGGWGG-FVVATLLVATMYLTFCFSLAELSTMIPTAGGGYGFAR 78 (442)
T ss_pred CCchhhccCCHHHHHHhHHHHHhh-ccchhHhhHHHHhCcHH-HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 367799999999999999999987 76666555566667643 6778999999999999999999999999999999999
Q ss_pred HHhCchhHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhCCCCCCcHHHHHHHHHHHHHHHHhhhhhhcCCCCchhHHHH
Q psy9206 102 VAFGELPAFLRLWVALLIMRPTTQAIVALTFAQYAIKPFFPDSELPDRAVLLLAAACLCKNGNAIKPFFPDSELPDRAVL 181 (190)
Q Consensus 102 ~~~g~~~~~~~gw~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 181 (190)
+.+||+.||++||.+|+ .+....+..+..+++++.. ++|..+ .+. ...+++++++ .+|.+. .+..++.|.
T Consensus 79 ~~~G~~~gf~~gw~~~~-~~~~~~~~~a~~~~~~l~~-~~p~~~--~~~---~~~~~~~~~~-~ln~~g--~~~~~~i~~ 148 (442)
T TIGR00908 79 RAFGPWGGFLAGTAILI-EFAFAPPAIACFIGAYCES-LFPVGP--GWL---AALVFYIVFI-GINILG--VGEAAKLEF 148 (442)
T ss_pred HHhCcHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH-HhccCc--hhH---HHHHHHHHHH-HHHHHH--HHHHHhHHH
Confidence 99999999999999998 6778888899999999886 555432 222 2233333333 455553 344566665
Q ss_pred HHHH
Q psy9206 182 LLAA 185 (190)
Q Consensus 182 ~~~~ 185 (190)
+++.
T Consensus 149 ~~~~ 152 (442)
T TIGR00908 149 VVTA 152 (442)
T ss_pred HHHH
Confidence 5543
No 21
>PRK10435 cadB lysine/cadaverine antiporter; Provisional
Probab=99.81 E-value=7.6e-19 Score=150.20 Aligned_cols=150 Identities=21% Similarity=0.212 Sum_probs=114.0
Q ss_pred ccccccchhHHHHHHhhhhhcchhccchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhhcccCcchHhhHHHHh
Q psy9206 25 QMKRKITLLGGVSIIVGCIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTIGALCYAELGTCISRSGGDYAYILVAF 104 (190)
Q Consensus 25 ~l~r~l~~~~~~~~~~~~~ig~g~~~~~~~~~~~~G~~g~~~~~~li~~i~~~~~~~~~aEl~s~~P~~GG~y~~~~~~~ 104 (190)
+.+|++++++.+++.+|.++|+|+|..++... ..|+. .+++|+++++..++.+++++||++++|++||.|+|+++ +
T Consensus 2 ~~~~~lg~~~~~~l~vg~~IGsGif~lp~~~a-~~G~~--~i~~wli~~~~~l~~al~~aEL~s~~P~~GG~y~y~~~-~ 77 (435)
T PRK10435 2 SSAKKIGLFACTGVVAGNMMGSGIALLPANLA-SIGSI--AIWGWIISIIGAMSLAYVYARLATKNPQQGGPIAYAGE-I 77 (435)
T ss_pred CCCCcCCHHHHHHHHHhhHHHHHHHHHHHHHH-HhHHH--HHHHHHHHHHHHHHHHHHHHHHHhhCCCCCChhHHHHH-H
Confidence 35788999999999999999999999988864 45643 67889999999999999999999999999999999999 8
Q ss_pred CchhHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhCCCCCCcHHHHHHHHHHHHHHHHhhhhhhcCCCCchhHHHHHHH
Q psy9206 105 GELPAFLRLWVALLIMRPTTQAIVALTFAQYAIKPFFPDSELPDRAVLLLAAACLCKNGNAIKPFFPDSELPDRAVLLLA 184 (190)
Q Consensus 105 g~~~~~~~gw~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (190)
||+.||.++|.+|...| ............|+.. ++|..+++ ....++...++++++ .+|....| ..++.|.+.+
T Consensus 78 g~~~gf~~gw~~~~~~~-~~~~~~~~~~~~y~~~-~~p~~~~~-~~~~~~~~~i~~~~~-~ln~~gvk--~~~~i~~i~~ 151 (435)
T PRK10435 78 SPAFGFQTGVLYYHANW-IGNLAIGITAVSYLST-FFPVLNDP-IPAGIACIAIVWVFT-FVNMLGGT--WVSRLTTIGL 151 (435)
T ss_pred CcHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH-HccccCCh-HHHHHHHHHHHHHHH-HHHHHhHH--HHHHHHHHHH
Confidence 99999999999997455 3444555666677775 56654332 333344445555554 66666543 4566665444
No 22
>KOG1286|consensus
Probab=99.81 E-value=1.4e-19 Score=157.52 Aligned_cols=162 Identities=20% Similarity=0.213 Sum_probs=133.9
Q ss_pred ccccccccccchhHHHHHHhhhhhcchhccchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhhccc-CcchHhh
Q psy9206 21 PIKVQMKRKITLLGGVSIIVGCIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTIGALCYAELGTCISR-SGGDYAY 99 (190)
Q Consensus 21 ~~~~~l~r~l~~~~~~~~~~~~~ig~g~~~~~~~~~~~~G~~g~~~~~~li~~i~~~~~~~~~aEl~s~~P~-~GG~y~~ 99 (190)
++++++||+++.+|+.++++|.++|+|++...+..+.+.|+++ .+++++++++..++.+++++|++..+|. +|+.|+|
T Consensus 23 ~~~~~lkR~L~~rhl~miaiGg~IGtGl~V~sG~~l~~~gp~s-~iisf~i~g~~~~~~~~~~~E~~~~~P~~aGs~~~y 101 (554)
T KOG1286|consen 23 EGETELKRCLKTRHLQMLAIGGTIGTGLFVGTGSALRNGGPPS-LLISFIIAGIAALLSALCLGEFAVRFPVSAGSFYTY 101 (554)
T ss_pred CccchhhccCCcccEEEEEecceeccceEEeccHHHhccCChh-HHHHHHHHHHHHHHHHHHHHHHheecccccccceee
Confidence 3346899999999999999999999999999999999999875 7778999999999999999999999999 5999999
Q ss_pred HHHHhCchhHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhC---------CCCCCcHHHHHHHHHHHHHHHHhhhhhhc
Q psy9206 100 ILVAFGELPAFLRLWVALLIMRPTTQAIVALTFAQYAIKPFF---------PDSELPDRAVLLLAAACLCKNGNAIKPFF 170 (190)
Q Consensus 100 ~~~~~g~~~~~~~gw~~~~~~~~~~~a~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 170 (190)
+++..|+.++|.+||++++ .|....++++.+.+.++.. +. +..++..|....++..+++.++ ....+
T Consensus 102 a~~~i~e~~aF~~gWny~l-~y~i~~a~e~~a~s~~~~~-w~~~~~~~~~~~~~~~~~~~~~fla~~v~in~~--gv~~~ 177 (554)
T KOG1286|consen 102 AYRFVGESLAFAIGWNYLL-EYVIGLAAEARAWSSYLDY-WTGASLIGILVDTVNPGGWIPDFLAFILIINLF--GVLAY 177 (554)
T ss_pred eeeeeCcHHHHHHHHHHHH-HHHHhhhHHHHHHHHHHHH-HhccccccccccCCCCCccHHHHHHHHHHHHHH--HHhhc
Confidence 9999999999999999999 6889999999999999996 43 3444455555555555544444 44555
Q ss_pred CCCCchhHHHHHHHHHh
Q psy9206 171 PDSELPDRAVLLLAAAC 187 (190)
Q Consensus 171 ~~~~~~~~~~~~~~~~~ 187 (190)
...|+.....-+++.+.
T Consensus 178 ge~ef~~~~~kvl~~v~ 194 (554)
T KOG1286|consen 178 GEVEFSLAFNKILTAVG 194 (554)
T ss_pred cceeehHHHHHHHHHHH
Confidence 66777666666655543
No 23
>PRK11049 D-alanine/D-serine/glycine permease; Provisional
Probab=99.80 E-value=2.7e-18 Score=148.16 Aligned_cols=151 Identities=15% Similarity=0.193 Sum_probs=118.6
Q ss_pred ccccccccchhHHHHHHhhhhhcchhccchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhhcccCcchHhhHHH
Q psy9206 23 KVQMKRKITLLGGVSIIVGCIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTIGALCYAELGTCISRSGGDYAYILV 102 (190)
Q Consensus 23 ~~~l~r~l~~~~~~~~~~~~~ig~g~~~~~~~~~~~~G~~g~~~~~~li~~i~~~~~~~~~aEl~s~~P~~GG~y~~~~~ 102 (190)
++++||+++.++...+++|.++|+|+|..++..+..+|+ + .+++|++++++.++++.+++|++++.|..|+.|.|+++
T Consensus 15 ~~~l~r~l~~~~~~~i~vG~~IGsGif~~~g~~~~~aGp-~-~i~~~~i~~i~~~~~~~s~aEl~s~~~~~~~~~~ya~~ 92 (469)
T PRK11049 15 EQSLRRNLTNRHIQLIAIGGAIGTGLFMGSGKTISLAGP-S-IIFVYMIIGFMLFFVMRAMGELLLSNLEYKSFSDFASD 92 (469)
T ss_pred chhhhccCcHHHHHHHHHhhHHHhHHHHHhhHHHhhcCc-H-HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHH
Confidence 356999999999999999999999999999999999887 3 67899999999999999999999999999999999999
Q ss_pred HhCchhHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhCCCCCCcHHHHHHHHHHHHHHHHhhhhhhcCCCCchhHHHHH
Q psy9206 103 AFGELPAFLRLWVALLIMRPTTQAIVALTFAQYAIKPFFPDSELPDRAVLLLAAACLCKNGNAIKPFFPDSELPDRAVLL 182 (190)
Q Consensus 103 ~~g~~~~~~~gw~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 182 (190)
.+||..||++||.+|+ .+....+.+...++.++.. ++|+. +.+.. +.+++++++ .+|.+. .+..++.|.+
T Consensus 93 ~~g~~~gf~~gW~~~~-~~~~~~~a~~~a~~~~~~~-~~p~~--~~~~~---~~~~~~~~~-~iN~~g--~~~~~~i~~~ 162 (469)
T PRK11049 93 LLGPWAGYFTGWTYWF-CWVVTGIADVVAITAYAQF-WFPDL--SDWVA---SLAVVLLLL-SLNLAT--VKMFGEMEFW 162 (469)
T ss_pred HhCcHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH-hcCCC--cHHHH---HHHHHHHHH-HHHHHh--HHHHHHHHHH
Confidence 9999999999999998 4545555666677777774 55643 23322 222333333 566664 3455666655
Q ss_pred HHH
Q psy9206 183 LAA 185 (190)
Q Consensus 183 ~~~ 185 (190)
.+.
T Consensus 163 ~~~ 165 (469)
T PRK11049 163 FAM 165 (469)
T ss_pred HHH
Confidence 443
No 24
>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]
Probab=99.80 E-value=2.9e-18 Score=143.72 Aligned_cols=148 Identities=19% Similarity=0.240 Sum_probs=132.8
Q ss_pred ccccccccccchhHHHHHHhhhhhcchhccchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhhcccCcchHhhH
Q psy9206 21 PIKVQMKRKITLLGGVSIIVGCIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTIGALCYAELGTCISRSGGDYAYI 100 (190)
Q Consensus 21 ~~~~~l~r~l~~~~~~~~~~~~~ig~g~~~~~~~~~~~~G~~g~~~~~~li~~i~~~~~~~~~aEl~s~~P~~GG~y~~~ 100 (190)
++++++||.++.+|+..+++|..||+|.|...+..+..+||. .+++++++++..+++.-.+.||...-|++|+.-+|+
T Consensus 6 ~~~~~l~rgL~~RHIqlIAiGGaIGtGLFlGSg~~I~~AGPS--vlLaY~I~G~~~f~iMRaLGEm~~~~p~~gSF~~~a 83 (462)
T COG1113 6 NEEQGLKRGLKNRHIQLIAIGGAIGTGLFLGSGSAIAMAGPS--VLLAYLIAGIFVFLIMRALGEMLVANPVSGSFSDYA 83 (462)
T ss_pred ccchhhhhhhHHHHHHHHHHhhhhhhhhhcccchhhhhhCcH--HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcHHHHH
Confidence 455679999999999999999999999999999999999976 677899999999999999999999999999999999
Q ss_pred HHHhCchhHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhCCCCCCcHHHHHHHHHHHHHHHHhhhhhhcCCCC
Q psy9206 101 LVAFGELPAFLRLWVALLIMRPTTQAIVALTFAQYAIKPFFPDSELPDRAVLLLAAACLCKNGNAIKPFFPDSE 174 (190)
Q Consensus 101 ~~~~g~~~~~~~gw~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 174 (190)
++.+||+.||++||.||+ .|....-++..+.+.|++. ++|+. |.|...+....++...+..-.+.+.+.|
T Consensus 84 ~~~lG~~Agf~tgW~YW~-~wv~v~~ae~tAi~~y~~~-WfP~v--P~Wv~al~~~~l~~~~NL~sVk~FGE~E 153 (462)
T COG1113 84 RKYLGPWAGFLTGWTYWF-FWVLVGIAELTAIGIYLQF-WFPDV--PQWVFALAAVVLLLAVNLISVKVFGELE 153 (462)
T ss_pred HHHhcchHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH-hcCCC--cHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999 7888999999999999996 88876 6777777777777777756677777776
No 25
>TIGR03810 arg_ornith_anti arginine/ornithine antiporter. Members of this protein family are the arginine/ornithine antiporter, ArcD. This exchanger of ornithine for arginine occurs in a system with arginine deiminase, ornithine carbamoyltransferase, and carbamate kinase, with together turn arginine to ornithine with the generation of ATP and release of CO2.
Probab=99.79 E-value=3e-18 Score=147.75 Aligned_cols=153 Identities=22% Similarity=0.259 Sum_probs=114.1
Q ss_pred cccchhHHHHHHhhhhhcchhccchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhhcccC-cchHhhHHHHhCc
Q psy9206 28 RKITLLGGVSIIVGCIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTIGALCYAELGTCISRS-GGDYAYILVAFGE 106 (190)
Q Consensus 28 r~l~~~~~~~~~~~~~ig~g~~~~~~~~~~~~G~~g~~~~~~li~~i~~~~~~~~~aEl~s~~P~~-GG~y~~~~~~~g~ 106 (190)
|++++++.+++.++.++|+|+|..++.....+|+. ..+++|++++++.++++++++|+++++|++ ||.|+|+++.+||
T Consensus 1 ~~lgl~~~~~l~vg~~IGsGif~~~~~~~~~ag~~-~~l~~w~i~~~~~~~~al~~aeL~s~~P~~gGG~y~y~~~~fG~ 79 (468)
T TIGR03810 1 KKLGLGALTALVVGSMIGSGIFSLPSDMAAGAAAG-AVLIGWVITGVGMLALAFSFQNLANKKPELDGGVYSYAKAGFGP 79 (468)
T ss_pred CCCCHHHHHHHHHHhHHhhHHHHhHHHHHHhhchH-HHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCChhhhHHhHcCc
Confidence 68999999999999999999999999988887753 367789999999999999999999999996 5999999999999
Q ss_pred hhHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhCCCCCC-cHHHHHHHHHHHHHHHHhhhhhhcCCCCchhHHHHHHHH
Q psy9206 107 LPAFLRLWVALLIMRPTTQAIVALTFAQYAIKPFFPDSEL-PDRAVLLLAAACLCKNGNAIKPFFPDSELPDRAVLLLAA 185 (190)
Q Consensus 107 ~~~~~~gw~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (190)
+.||+.||.+|+..+ ............++.. ++|.... +..........++++++ .+|.. ..+..++.|.+++.
T Consensus 80 ~~gf~~gw~~w~~~~-~~~~~~~~~~~~~~~~-~~p~~~~~~~~~~~~~~~~~~~~~~-~ln~~--Gv~~~~~i~~i~~~ 154 (468)
T TIGR03810 80 FMGFISAWGYWLSAW-LGNVAYATLLFSTLGY-FFPIFGGGNNPPSIIGASVLLWCVH-FLVLR--GVEGAAFINTITTI 154 (468)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH-hcccccCCCcHHHHHHHHHHHHHHH-HHHHh--CHHHHHHHHHHHHH
Confidence 999999999998433 3444444444555553 5554322 12233344444444444 55554 34456777776654
Q ss_pred H
Q psy9206 186 A 186 (190)
Q Consensus 186 ~ 186 (190)
+
T Consensus 155 ~ 155 (468)
T TIGR03810 155 A 155 (468)
T ss_pred H
Confidence 3
No 26
>PRK11021 putative transporter; Provisional
Probab=99.79 E-value=5.4e-18 Score=143.87 Aligned_cols=147 Identities=20% Similarity=0.263 Sum_probs=111.4
Q ss_pred cchhHHHHHHhhhhhcchhccchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhhcccCcchHhhHHHHhCchhH
Q psy9206 30 ITLLGGVSIIVGCIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTIGALCYAELGTCISRSGGDYAYILVAFGELPA 109 (190)
Q Consensus 30 l~~~~~~~~~~~~~ig~g~~~~~~~~~~~~G~~g~~~~~~li~~i~~~~~~~~~aEl~s~~P~~GG~y~~~~~~~g~~~~ 109 (190)
+++++..++.++.|+|+|+|..++.+...+|+. .+++|+++++..++.+++++|+++++|++||.|+|+++.+||+.|
T Consensus 1 ~g~~~~~~l~~g~~IGsGif~~~g~~~~~aG~~--~~~~~~i~~~~~~~~al~~aEl~s~~P~aGG~y~y~~~~~G~~~g 78 (410)
T PRK11021 1 LGLWQGIGLLSTSLLGTGVFAVPALAALVAGNN--SLWAWPLLILLIFPIAIVFARLGRHFPHAGGPAHFVGMAFGPRLG 78 (410)
T ss_pred CcHHHHHHHHHHHHHhhHHHHhHHHHHHhcCch--HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHhHHHHhCchhH
Confidence 578999999999999999999999999998864 788999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhCCCCCCcHHHHHHHHHHHHHHHHhhhhhhcCCCCchhHHHHHHHHH
Q psy9206 110 FLRLWVALLIMRPTTQAIVALTFAQYAIKPFFPDSELPDRAVLLLAAACLCKNGNAIKPFFPDSELPDRAVLLLAAA 186 (190)
Q Consensus 110 ~~~gw~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (190)
|++||.++. .+....+.......+++.. +++..+ +....+..+++++++ .+|... .+..++.|.+++.+
T Consensus 79 f~~gw~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~---~~~~~~~~~~~~~~~-~ln~~G--v~~~~~~~~~~~~~ 147 (410)
T PRK11021 79 RVTGWLFLS-VIPVGLPAALQIAAGFGQA-LFGWSS---WQLLLAELLTLALLW-LLNLRG--ASSSANLQTVIALL 147 (410)
T ss_pred HHHHHHHHH-HHHhhHHHHHHHHHHHHHH-HcCCCC---chHHHHHHHHHHHHH-HHHHhh--HHHHHHHHHHHHHH
Confidence 999999997 4444444444445566654 444322 222333344444444 555553 44557776665543
No 27
>TIGR00913 2A0310 amino acid permease (yeast).
Probab=99.78 E-value=9.9e-18 Score=144.80 Aligned_cols=114 Identities=17% Similarity=0.153 Sum_probs=100.5
Q ss_pred ccccchhHHHHHHhhhhhcchhccchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhhcccC-cchHhhHHHHhC
Q psy9206 27 KRKITLLGGVSIIVGCIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTIGALCYAELGTCISRS-GGDYAYILVAFG 105 (190)
Q Consensus 27 ~r~l~~~~~~~~~~~~~ig~g~~~~~~~~~~~~G~~g~~~~~~li~~i~~~~~~~~~aEl~s~~P~~-GG~y~~~~~~~g 105 (190)
||+++.+++.++++|.++|+|++..++..+..+|+.+ .+++|++++++.++++++++|+++++|++ ||.|.|+++.+|
T Consensus 1 ~r~L~~~~~~~l~vg~~IGsGif~~~~~~~~~~Gp~~-~i~~~~i~~~~~~~~a~~~aEl~s~~P~~gG~~~~~~~~~~g 79 (478)
T TIGR00913 1 KKSLKQRHIQMIALGGTIGTGLLVGSGTALATGGPAG-LLIGYAIMGSIIYCVMQSLGEMATFYPVVSGSFATYASRFVD 79 (478)
T ss_pred CCCCcHHHHHHHHHhccccchhhhcchhHHHhcCCHH-HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHcC
Confidence 5889999999999999999999999999999888653 67789999999999999999999999964 567789999999
Q ss_pred chhHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhCCC
Q psy9206 106 ELPAFLRLWVALLIMRPTTQAIVALTFAQYAIKPFFPD 143 (190)
Q Consensus 106 ~~~~~~~gw~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 143 (190)
|..||.+||.+|+ .+....+++....+.++.. +.+.
T Consensus 80 ~~~gf~~gw~~~~-~~~~~~~~~~~~~~~~~~~-~~~~ 115 (478)
T TIGR00913 80 PAFGFAVGWNYWL-QWLIVLPLELVTASMTIQY-WTDK 115 (478)
T ss_pred cHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH-cCCC
Confidence 9999999999999 5667788888888888774 4443
No 28
>TIGR00909 2A0306 amino acid transporter.
Probab=99.76 E-value=2.4e-17 Score=140.47 Aligned_cols=154 Identities=27% Similarity=0.388 Sum_probs=119.2
Q ss_pred cccccchhHHHHHHhhhhhcchhccchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhhcccCcchHhhHHHHhC
Q psy9206 26 MKRKITLLGGVSIIVGCIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTIGALCYAELGTCISRSGGDYAYILVAFG 105 (190)
Q Consensus 26 l~r~l~~~~~~~~~~~~~ig~g~~~~~~~~~~~~G~~g~~~~~~li~~i~~~~~~~~~aEl~s~~P~~GG~y~~~~~~~g 105 (190)
+||+++.+|.+.+.++.++|+|++..++......|+. .+++|+++++..++.+++++|+++++|++||.|+|+++.+|
T Consensus 1 l~r~l~~~~~~~~~i~~~ig~gi~~~~~~~~~~~G~~--~~l~~li~~~~~~~~a~~~~el~~~~p~~Gg~y~~~~~~~G 78 (429)
T TIGR00909 1 LSRELGLFDLTMLGIGAMIGTGIFVVTGIAAGKAGPA--VILSFVLAGLTALFIALVYAELAAMLPVAGSPYTYAYEAMG 78 (429)
T ss_pred CCccccHHHHHHHHHhhhhcchHHHhHHHHHHHcCCH--HHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcceeeHHHHhC
Confidence 5899999999999999999999999998877776653 56789999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhCCC--CCCcHHHH---------HHHHHHHHHHHHhhhhhhcCCCC
Q psy9206 106 ELPAFLRLWVALLIMRPTTQAIVALTFAQYAIKPFFPD--SELPDRAV---------LLLAAACLCKNGNAIKPFFPDSE 174 (190)
Q Consensus 106 ~~~~~~~gw~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~~~~~---------~~~~~~~l~~~~~~~~~~~~~~~ 174 (190)
|+.||+.+|.+++ .+....+.....+++++.. +.+. .+.+.+.. .+....++++++ .+|.. +.+
T Consensus 79 ~~~g~~~gw~~~~-~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~l~~~--g~~ 153 (429)
T TIGR00909 79 ELTAFIIGWSLWL-EYGVAVAAVAVGWGGYLQE-FLPGVGLDLPAVLTAKPGNGGVFNLPALLIVLFLT-YILYL--GAK 153 (429)
T ss_pred cHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH-HHHHccccCchhhhcCCcccccccHHHHHHHHHHH-HHHHh--CcH
Confidence 9999999999998 5667888888888888876 3331 12222111 122333344444 55555 345
Q ss_pred chhHHHHHHHHH
Q psy9206 175 LPDRAVLLLAAA 186 (190)
Q Consensus 175 ~~~~~~~~~~~~ 186 (190)
..+|.|.+.+.+
T Consensus 154 ~~~~~~~v~~~~ 165 (429)
T TIGR00909 154 ESGKVNDILVVL 165 (429)
T ss_pred HHHHHHHHHHHH
Confidence 567777765543
No 29
>TIGR00930 2a30 K-Cl cotransporter.
Probab=99.72 E-value=5.3e-17 Score=149.41 Aligned_cols=158 Identities=18% Similarity=0.184 Sum_probs=127.1
Q ss_pred ccccccchhHHHHHH-hhhhhcchhccchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhh-cccCcchHhhHHH
Q psy9206 25 QMKRKITLLGGVSII-VGCIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTIGALCYAELGTC-ISRSGGDYAYILV 102 (190)
Q Consensus 25 ~l~r~l~~~~~~~~~-~~~~ig~g~~~~~~~~~~~~G~~g~~~~~~li~~i~~~~~~~~~aEl~s~-~P~~GG~y~~~~~ 102 (190)
.-+|++++++...+- +++++|+++|..++.+..++|.. .+++.|++++++.++.++|++|+++. +|++||.|.|++|
T Consensus 73 ~~~~~lG~~~GV~~~~~~nIiGv~iFlr~~~Vvg~aG~~-~sll~~~la~~vtlltaLS~seiaTng~p~aGG~Y~yisr 151 (953)
T TIGR00930 73 AGAVKFGWVMGVLVPCLLNIWGVILFLRLSWIVGQAGIG-LSLLIILLCCCVTTITGLSMSAIATNGVVKGGGAYYLISR 151 (953)
T ss_pred CCCcccceeEeeeHhhhHhHheeeeeeeHHHHHHhhhHH-HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHH
Confidence 346889999999887 99999999999999999999854 47778999999999999999999998 9999999999999
Q ss_pred HhCchhHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhCCCC-----CCcHHHHHHHHHHHHHHHHhhhhhhcCCCCchh
Q psy9206 103 AFGELPAFLRLWVALLIMRPTTQAIVALTFAQYAIKPFFPDS-----ELPDRAVLLLAAACLCKNGNAIKPFFPDSELPD 177 (190)
Q Consensus 103 ~~g~~~~~~~gw~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 177 (190)
.+||..|+..||.+++ ....+.+..+.++++++...+ +.. ..+.....+++.+++++++ ++|... .+..+
T Consensus 152 alGp~~Gf~iG~~~~l-a~~va~A~~~~Gf~eyl~~lf-~~~~~~~~~~~~~~~~iia~i~l~ll~-~In~~G--vk~~a 226 (953)
T TIGR00930 152 SLGPEFGGSIGLIFAF-ANAVAVAMYVVGFAETVLDLL-RENGSKIMVDPINDIRIYGTVTVVVLL-GISFAG--MEWEN 226 (953)
T ss_pred HhCcHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHh-hhcccccccCccccchHHHHHHHHHHH-HHHHhh--HHHHH
Confidence 9999999999999998 666888999999999998743 221 1111223455555555555 666664 45668
Q ss_pred HHHHHHHHHhh
Q psy9206 178 RAVLLLAAACL 188 (190)
Q Consensus 178 ~~~~~~~~~~~ 188 (190)
++|.+++++.+
T Consensus 227 k~q~vl~vi~l 237 (953)
T TIGR00930 227 KAQVLFLVIVL 237 (953)
T ss_pred HHHHHHHHHHH
Confidence 88888776643
No 30
>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A ....
Probab=99.70 E-value=4.1e-16 Score=132.60 Aligned_cols=149 Identities=29% Similarity=0.457 Sum_probs=116.6
Q ss_pred cchhHHHHHHhhhhhcchhccchHHHHHhcccchHHHHHHHHHHHHH-HHHHHHHHHhhhhcccCcchHhhHHHHhCchh
Q psy9206 30 ITLLGGVSIIVGCIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLS-TIGALCYAELGTCISRSGGDYAYILVAFGELP 108 (190)
Q Consensus 30 l~~~~~~~~~~~~~ig~g~~~~~~~~~~~~G~~g~~~~~~li~~i~~-~~~~~~~aEl~s~~P~~GG~y~~~~~~~g~~~ 108 (190)
+++++.+++.++.++|+|++..+ .....|+. .++.|+++++.. ++.+++++|+++++|++||.|.|+++.+||+.
T Consensus 1 l~~~~~~~l~~~~~~g~gi~~~~--~~~~~G~~--~~~~~~i~~~~~~l~~a~~~~el~~~~p~~GG~y~~~~~~~g~~~ 76 (426)
T PF13520_consen 1 LGLFSAIALVIGSIIGSGIFFSP--AAASAGPS--AILAWIIAALLFFLPIALSYAELSSAYPSAGGIYVWVSRAFGPFW 76 (426)
T ss_dssp B-HHHHHHHHHHCHHTTTTTTHH--HHTCTGCH--HHHHHHHHHHHHHHHHHHHHHHHHTTTTSSTTHHHHHHHHH-HHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHH--HHHHHhHH--HHHHHHHHHHHHHHHHHHHHHHHhccCCCcCeeeehhhhcccccc
Confidence 57899999999999999998876 44455543 666788888887 89999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhCCCCCCcHHHHHHHHHHHHHHHHhhhhhhcCCCCchhHHHHHHHHH
Q psy9206 109 AFLRLWVALLIMRPTTQAIVALTFAQYAIKPFFPDSELPDRAVLLLAAACLCKNGNAIKPFFPDSELPDRAVLLLAAA 186 (190)
Q Consensus 109 ~~~~gw~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (190)
||+.+|.+++ .+....+.....+.+++...+.++.+++.+...++..+++++.. .+|.... +...+.|..++.+
T Consensus 77 g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~g~--~~~~~~~~~~~~~ 150 (426)
T PF13520_consen 77 GFIVGWLYWV-AYILSLASVASSFASYLLSLFGPDLNPSPWPQFLIAIILILLFT-LLNLLGI--KLSGKIQNILTVI 150 (426)
T ss_dssp HHHHHHHHHH-HHHHHHHHHHHHHHHHHTTTTTGGGTCSHHHHHHHHHHHHHHHH-HHHHTTH--HHHHHHHHHHHHH
T ss_pred hhcccceeEE-Eeeccccccccchhhhhhhccccccccccchheeeeecccccce-Eeeechh--hhhhhhhhhhhhh
Confidence 9999999998 56677777888889988875555555556677777776766666 6666643 4446776666544
No 31
>PRK10197 gamma-aminobutyrate transporter; Provisional
Probab=99.70 E-value=4e-16 Score=133.88 Aligned_cols=135 Identities=17% Similarity=0.216 Sum_probs=103.5
Q ss_pred HHhhhhhcchhccchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhhcccCcchHhhHHHHhCchhHHHHHHHHH
Q psy9206 38 IIVGCIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTIGALCYAELGTCISRSGGDYAYILVAFGELPAFLRLWVAL 117 (190)
Q Consensus 38 ~~~~~~ig~g~~~~~~~~~~~~G~~g~~~~~~li~~i~~~~~~~~~aEl~s~~P~~GG~y~~~~~~~g~~~~~~~gw~~~ 117 (190)
+++|.++|+|+|..++..+..+|+. .+++|++++++.++.+++++||++++|++||.|+|++|.+||.+||..||.+|
T Consensus 2 ~~ig~~IGsGif~~~g~~~~~aG~~--~ll~~~i~gi~~~~~al~~aEL~s~~P~~Gg~y~y~~~~~G~~~gf~~gw~~~ 79 (446)
T PRK10197 2 LSIAGVIGASLFVGSSVAIAEAGPA--VLLAYLFAGLLVVMIMRMLAEMAVATPDTGSFSTYADKAIGRWAGYTIGWLYW 79 (446)
T ss_pred eeecchhHhHHHHHhHHHHHhcChH--HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHcChHHHHHHHHHHH
Confidence 5688999999999999999998863 77899999999999999999999999999999999999999999999999999
Q ss_pred HHHHhHHHHHHHHHHHHHhhhhhCCCCCCcHHHHHHHHHHHHHHHHhhhhhhcCCCCchhHHHHHHH
Q psy9206 118 LIMRPTTQAIVALTFAQYAIKPFFPDSELPDRAVLLLAAACLCKNGNAIKPFFPDSELPDRAVLLLA 184 (190)
Q Consensus 118 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (190)
+ .+....+.+....+.++.. +.|.. + ...++.+++++++ .+|.+.. +...+.|.+++
T Consensus 80 ~-~~~~~~~~~~~~~~~~~~~-~~~~~--~---~~~~~~~~l~~~~-~lN~~gv--~~~~~i~~~~~ 136 (446)
T PRK10197 80 W-FWVLVIPLEANIAAMILHS-WVPGI--P---IWLFSLVITLALT-GSNLLSV--KNYGEFEFWLA 136 (446)
T ss_pred H-HHHHHHHHHHHHHHHHHHh-ccccC--c---HHHHHHHHHHHHH-HHHHHhh--HHHhhhHHHHH
Confidence 8 5666777777666666553 43422 1 2234444444444 5666533 33455555444
No 32
>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism]
Probab=99.63 E-value=9.2e-15 Score=125.26 Aligned_cols=158 Identities=27% Similarity=0.429 Sum_probs=122.7
Q ss_pred ccccccccccchhH-HHHHHhhhhhcchhccchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhhcccCcchHhh
Q psy9206 21 PIKVQMKRKITLLG-GVSIIVGCIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTIGALCYAELGTCISRSGGDYAY 99 (190)
Q Consensus 21 ~~~~~l~r~l~~~~-~~~~~~~~~ig~g~~~~~~~~~~~~G~~g~~~~~~li~~i~~~~~~~~~aEl~s~~P~~GG~y~~ 99 (190)
.++++++|+++.++ ...+..+.++|.|++..++...... +. ..+.|+++++...+.+++++|+++.+|++||.|.|
T Consensus 5 ~~~~~~~~~l~~~~~~~~~~~~~~~~~gif~~~~~~~~~~--~~-~~~~~li~~~~~~~~a~~~~el~~~~p~~GG~y~~ 81 (466)
T COG0531 5 MMSSELKKKLGLFDLLTALGVGSMIGSGIFALPGSAAGLA--PA-AILAWLIAGIIILFLALSYAELSSAIPSAGGAYAY 81 (466)
T ss_pred ccchhcCCCcchHHHHHHHHHHhhHhhhhHhhhhhHHHhc--hH-HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCeeee
Confidence 34566789999999 8899999999999998877766555 22 44459999999999999999999999999999999
Q ss_pred HHHHhCchhHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhCCC---CCCcHHHHHHHHHHHHHHHHhhhhhhcCCCCch
Q psy9206 100 ILVAFGELPAFLRLWVALLIMRPTTQAIVALTFAQYAIKPFFPD---SELPDRAVLLLAAACLCKNGNAIKPFFPDSELP 176 (190)
Q Consensus 100 ~~~~~g~~~~~~~gw~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 176 (190)
+++.+||+.+|+++|.+++ .+....++.+...++++.. +.+. ...+.+....++.+.+++.+ .+|... .+..
T Consensus 82 ~~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ln~~G--~~~~ 156 (466)
T COG0531 82 AKRALGPRLGFLAGWLYLL-AYVIALAAIAIGAASYLSY-LFPGPGLLSIGPLLIILIALALIALLT-LLNLRG--IKAS 156 (466)
T ss_pred hhhhcCcchHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH-hcCcchhhcCCchHHHHHHHHHHHHHH-HHHHhh--HHHH
Confidence 9999999999999999999 5668888888888887775 5553 22222566666666666666 666664 3444
Q ss_pred hHHHHHHHHH
Q psy9206 177 DRAVLLLAAA 186 (190)
Q Consensus 177 ~~~~~~~~~~ 186 (190)
++.|...+.+
T Consensus 157 ~~~~~~~~~~ 166 (466)
T COG0531 157 AKINSIITIL 166 (466)
T ss_pred HHHHHHHHHH
Confidence 6666665543
No 33
>PRK15238 inner membrane transporter YjeM; Provisional
Probab=99.57 E-value=1.6e-13 Score=119.29 Aligned_cols=88 Identities=23% Similarity=0.335 Sum_probs=71.0
Q ss_pred cccccchhHHHHHHhhhhhcchhccchHHHHHhcccchHHHHHHHHHHHH-HHHHHHHHHHhhhhccc-CcchHhhHHHH
Q psy9206 26 MKRKITLLGGVSIIVGCIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLL-STIGALCYAELGTCISR-SGGDYAYILVA 103 (190)
Q Consensus 26 l~r~l~~~~~~~~~~~~~ig~g~~~~~~~~~~~~G~~g~~~~~~li~~i~-~~~~~~~~aEl~s~~P~-~GG~y~~~~~~ 103 (190)
+||+++++++..+.++.++|.+.. + ......|+. .++.|+++++. .++.+++++|+++++|+ +||+|+|+++.
T Consensus 5 ~~~~l~~~~l~~~~~~~vig~~~~--~-~~~~~~G~~--~i~~~~i~~~~~~l~~al~~aEL~s~~P~~aGG~Y~w~~~~ 79 (496)
T PRK15238 5 TKKKLSLIGLILMIFTSVFGFANS--P-RAFYLMGYS--AIPWYILSAILFFIPFALMMAEYGSAFKDEKGGIYSWMNKS 79 (496)
T ss_pred ccCeeeHHHHHHHHHHHHHhCCch--H-HHHHHcChH--HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHH
Confidence 478899999999999999886532 2 224455543 45556666655 57899999999999997 89999999999
Q ss_pred hCchhHHHHHHHHHH
Q psy9206 104 FGELPAFLRLWVALL 118 (190)
Q Consensus 104 ~g~~~~~~~gw~~~~ 118 (190)
+||+.||+.+|.+|.
T Consensus 80 ~G~~~gf~~~w~~~~ 94 (496)
T PRK15238 80 VGPKFAFIGTFMWFA 94 (496)
T ss_pred cCchHHHHHHHHHHH
Confidence 999999999998665
No 34
>PHA02764 hypothetical protein; Provisional
Probab=99.50 E-value=1e-13 Score=111.39 Aligned_cols=105 Identities=18% Similarity=0.041 Sum_probs=81.5
Q ss_pred CccccccccccchhHHHHHHhhhhhcchhccchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhhcccCcchHhh
Q psy9206 20 SPIKVQMKRKITLLGGVSIIVGCIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTIGALCYAELGTCISRSGGDYAY 99 (190)
Q Consensus 20 ~~~~~~l~r~l~~~~~~~~~~~~~ig~g~~~~~~~~~~~~G~~g~~~~~~li~~i~~~~~~~~~aEl~s~~P~~GG~y~~ 99 (190)
.++...|-|+.+.+|.+...++.+.+ |.-...........++...+.+|+++++..++.+++++|+++++|++||.|+|
T Consensus 4 vReSSGLVREvs~lDAF~~Nl~~m~~-Gi~Is~~~l~a~l~pG~nlLLAWLLGGLlALPgAL~YAELGSAmPrAGGdYVY 82 (399)
T PHA02764 4 ERKSSGIIKSFNILDIFSINLLYMGI-LSGISYPLFVSSLLKNVNLLFAILIGAVFEIPLLLMYYKLTTKFPLNGGDYAY 82 (399)
T ss_pred chhcCCceeeccHHHHHHHHHHhhcc-chhHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCceEEE
Confidence 35667899999999999999998832 22111111122233334467789999999999999999999999999999999
Q ss_pred HHHHhCchhHHHHHHHHHHHHHhHHHH
Q psy9206 100 ILVAFGELPAFLRLWVALLIMRPTTQA 126 (190)
Q Consensus 100 ~~~~~g~~~~~~~gw~~~~~~~~~~~a 126 (190)
.+|++||+.|++.||..|. .+....+
T Consensus 83 ISRAFGP~~GFLvG~a~WL-tl~~G~P 108 (399)
T PHA02764 83 IRTAFSSKFYTIFGISLWL-TYVLSQP 108 (399)
T ss_pred hHHhhCccHHHHHHHHHHH-HHHhhcc
Confidence 9999999999999999987 3434433
No 35
>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter. Members of this protein family are putative putative glutamate/gamma-aminobutyrate antiporters. Each member of the seed alignment is found adjacent to a glutamate decarboxylase, which converts glutamate (Glu) to gamma-aminobutyrate (GABA). However, the majority belong to genome contexts with a glutaminase (converts Gln to Glu) as well as the decarboxylase that converts Glu to GABA. The specificity of the transporter remains uncertain.
Probab=99.47 E-value=1.8e-12 Score=112.12 Aligned_cols=86 Identities=20% Similarity=0.269 Sum_probs=69.9
Q ss_pred cccchhHHHHHHhhhhhcchhccchHHHHHhcccchHHHHHHHHHHHHH-HHHHHHHHHhhhhcccCcchHhhHHHHhCc
Q psy9206 28 RKITLLGGVSIIVGCIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLS-TIGALCYAELGTCISRSGGDYAYILVAFGE 106 (190)
Q Consensus 28 r~l~~~~~~~~~~~~~ig~g~~~~~~~~~~~~G~~g~~~~~~li~~i~~-~~~~~~~aEl~s~~P~~GG~y~~~~~~~g~ 106 (190)
||++.+++..+.+..+.+ +...+ .....|+. .++.|++++++. ++.+++++||++++|++||.|.|+++.+||
T Consensus 1 ~~~~~~~l~~~~~~~v~~--~~~~~--~~a~~G~~--~~~~~~i~~~~~~ip~al~~aEL~~~~P~~GG~y~~~~~a~G~ 74 (474)
T TIGR03813 1 KKLTVVTLAIMNITAVVS--LRGLP--AEAEYGLS--AAFYYLFAAIFFLVPVSLVAAELATAWPEKGGVFRWVGEAFGA 74 (474)
T ss_pred CcccHHHHHHHHHHHHHH--hhcch--HHHHhhHH--HHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCceeeHhhhcCh
Confidence 469999999999887753 33322 23344532 566799999876 479999999999999999999999999999
Q ss_pred hhHHHHHHHHHHH
Q psy9206 107 LPAFLRLWVALLI 119 (190)
Q Consensus 107 ~~~~~~gw~~~~~ 119 (190)
++||+.+|.+|..
T Consensus 75 ~~gf~~gw~~w~~ 87 (474)
T TIGR03813 75 RWGFLAIFMLWAQ 87 (474)
T ss_pred hHHHHHHHHHHHH
Confidence 9999999999983
No 36
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter. Lowered cutoffs from 1000/500 to 800/300, promoted from subfamily to equivalog, and put into a Genome Property DHH 9/1/2009
Probab=99.45 E-value=2e-12 Score=112.82 Aligned_cols=142 Identities=18% Similarity=0.248 Sum_probs=92.6
Q ss_pred ccccchhHHHHHHhhhhhcchhccchHHHHHhcccchHHHHH-HHHHHHH-HHHHHHHHHHhhhhcc-cCcchHhhHHHH
Q psy9206 27 KRKITLLGGVSIIVGCIIGSGIFVSPAGVLAETQSVGLSIVI-WTVCGLL-STIGALCYAELGTCIS-RSGGDYAYILVA 103 (190)
Q Consensus 27 ~r~l~~~~~~~~~~~~~ig~g~~~~~~~~~~~~G~~g~~~~~-~li~~i~-~~~~~~~~aEl~s~~P-~~GG~y~~~~~~ 103 (190)
+||++++++..+.++.+. +++..+. ....| ...+. |+++++. .++.+++++||++++| ++||+|+|+++.
T Consensus 3 ~~~l~~~~~~~~~~~~v~--~~~~~~~--~a~~G---~~~i~~~i~~~l~~~lp~al~~AELas~~p~~~GG~y~wv~~a 75 (507)
T TIGR00910 3 AKKLSLFGFFAITASMVL--AVYEYPT--FATSG---FHLVFFLLLGGILWFIPVALCAAEMATVDGWEEGGIFAWVSNT 75 (507)
T ss_pred CcEeeHHHHHHHHHHHHH--HHHhhHH--HHHhh---HHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCeeeehhhc
Confidence 577999999999998885 4443332 22333 34444 6666665 4779999999999997 899999999999
Q ss_pred hCchhHHHHHHHHHHHHHhHHHHHH---HHHHHHHhhhhhCCCCCCcHHHHHHHHHHHHHHHHhhhhhhcCCCCchhHHH
Q psy9206 104 FGELPAFLRLWVALLIMRPTTQAIV---ALTFAQYAIKPFFPDSELPDRAVLLLAAACLCKNGNAIKPFFPDSELPDRAV 180 (190)
Q Consensus 104 ~g~~~~~~~gw~~~~~~~~~~~a~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 180 (190)
+||++||.++|.+|+. +....+.. ......+.. .++..+.+.+...+...+++++++ ++|... .+..++++
T Consensus 76 ~G~~~Gf~~~~~~W~~-~~~~~~~~~~~~~~~~~y~~--~~~~~~~~~~~~~i~~l~i~~~~t-~~n~~G--~k~~~~i~ 149 (507)
T TIGR00910 76 LGERFGFAAIFFGWFQ-IAIGFIPMIYFILGALSYIL--KFPALNEDPIIKFIAALIIFWALA-FSQFGG--TKRTAKIA 149 (507)
T ss_pred cCccHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHh--cCchhccCcHHHHHHHHHHHHHHH-HHHHhh--hHHHHHHH
Confidence 9999999999999883 32222222 122223333 134444445555555555566665 556553 44556655
Q ss_pred H
Q psy9206 181 L 181 (190)
Q Consensus 181 ~ 181 (190)
.
T Consensus 150 ~ 150 (507)
T TIGR00910 150 K 150 (507)
T ss_pred H
Confidence 3
No 37
>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [], [], []. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. This domain is found in a wide variety of permeases, as well as several hypothetical proteins. ; GO: 0006810 transport, 0055085 transmembrane transport, 0016020 membrane
Probab=99.39 E-value=2.8e-13 Score=117.16 Aligned_cols=101 Identities=25% Similarity=0.378 Sum_probs=89.7
Q ss_pred HHHHhhhhhcchhccchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhhcccCcchHhhHHHHhCchhHHHHHHH
Q psy9206 36 VSIIVGCIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTIGALCYAELGTCISRSGGDYAYILVAFGELPAFLRLWV 115 (190)
Q Consensus 36 ~~~~~~~~ig~g~~~~~~~~~~~~G~~g~~~~~~li~~i~~~~~~~~~aEl~s~~P~~GG~y~~~~~~~g~~~~~~~gw~ 115 (190)
..++++.++|.|.+...+.....+|+.+ .++++++++++.++.+.+++|+++.+|++||.|.|++|.+||..|+.+||.
T Consensus 3 ~~~~ig~~ig~g~f~~~g~~~~~~G~~~-~~la~li~~i~~~~~~~~~~ems~~~p~~Gg~y~y~~~~lg~~~Gf~~gw~ 81 (478)
T PF00324_consen 3 FMISIGGIIGTGLFLGSGFAIAAAGPGG-APLAYLIAGIIVLLVALSLAEMSRRFPSAGGFYAYASRGLGPALGFAAGWA 81 (478)
T ss_pred EEeeHHHHHHHHHHHHHHHHHHhccccc-chhHhHHHHHHHHhhhhhhhhhhhhhccccchhhhhhhccCCcCCceeeHH
Confidence 3467888999999999999888888754 678899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhHHHHHHHHHHHHHhhh
Q psy9206 116 ALLIMRPTTQAIVALTFAQYAIK 138 (190)
Q Consensus 116 ~~~~~~~~~~a~~~~~~~~~~~~ 138 (190)
+|+ .+....+.+....+.++..
T Consensus 82 y~~-~~~~~~~~~~~~~~~~~~~ 103 (478)
T PF00324_consen 82 YWL-SYIAAIAAEATAAGSFLQF 103 (478)
T ss_pred HHH-HHHHHHHhhhhhhhhhhcc
Confidence 998 6777888887777776664
No 38
>TIGR00912 2A0309 spore germination protein (amino acid permease). This model describes spore germination protein GerKB and paralogs from Bacillus subtilis, Clostridium tetani, and other known or predicted endospore-forming members of the Firmicutes (low-GC Gram positive bacteria). Members show some similarity to amino acid permeases.
Probab=99.39 E-value=1.9e-11 Score=102.06 Aligned_cols=111 Identities=17% Similarity=0.145 Sum_probs=97.4
Q ss_pred cccchhHHHHHHhhhhhcchhccchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhhcccCcchHhhHHHHhCch
Q psy9206 28 RKITLLGGVSIIVGCIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTIGALCYAELGTCISRSGGDYAYILVAFGEL 107 (190)
Q Consensus 28 r~l~~~~~~~~~~~~~ig~g~~~~~~~~~~~~G~~g~~~~~~li~~i~~~~~~~~~aEl~s~~P~~GG~y~~~~~~~g~~ 107 (190)
++++.+|.+++.++.++|+|++..|+.....+|.. ++++++++++..++.++.++|+++++|++ +.+.|.++.+||+
T Consensus 1 ~~is~~q~~~l~~~~~iG~gil~~P~~~~~~a~~~--~wi~~ll~~~~~~~~~~~~~~l~~~~p~~-~~~~~~~~~~Gk~ 77 (359)
T TIGR00912 1 DKISSKQLIFLISSTMIGSGLLTLPALVSQSAGQD--GWISIILGGLIIIFLLCLMIKIMSKFPEK-NFSEILSKYLGKI 77 (359)
T ss_pred CcCcHHHHHHHHHHHHHHHHHHhhhHHHHhccCCC--eeHHHHHHHHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHhhHH
Confidence 36899999999999999999999999988888876 57889999999999999999999999987 5999999999999
Q ss_pred hHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhCC
Q psy9206 108 PAFLRLWVALLIMRPTTQAIVALTFAQYAIKPFFP 142 (190)
Q Consensus 108 ~~~~~gw~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 142 (190)
.|++.+|.++. +.....+.....+++++...+.|
T Consensus 78 ~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~ 111 (359)
T TIGR00912 78 LGRLLSILFIL-YFFLIAAYLIRIFADFIKTYLLP 111 (359)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999887 56566777777888888754444
No 39
>TIGR00837 araaP aromatic amino acid transport protein. aromatic amino acid transporters and includes the tyrosine permease, TyrP, of E. coli, and the tryptophan transporters TnaB and Mtr of E. coli.
Probab=99.28 E-value=4.5e-11 Score=100.57 Aligned_cols=142 Identities=12% Similarity=0.074 Sum_probs=96.4
Q ss_pred HHHhhhhhcchhccchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhhcccCcchHhhHHHHhCchhHHHHHHHH
Q psy9206 37 SIIVGCIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTIGALCYAELGTCISRSGGDYAYILVAFGELPAFLRLWVA 116 (190)
Q Consensus 37 ~~~~~~~ig~g~~~~~~~~~~~~G~~g~~~~~~li~~i~~~~~~~~~aEl~s~~P~~GG~y~~~~~~~g~~~~~~~gw~~ 116 (190)
.+.+++++|+|++..|......++.+ .++..+++++.....+++++|+++++|++||.|.|+++.+||+.+++.+|.+
T Consensus 4 ~lv~gt~IGaGIl~lP~~~a~~g~~~--~~~~~i~~~~~~~~~~l~~~el~~~~p~~~~~~~~~~~~~G~~~g~~~~~~~ 81 (381)
T TIGR00837 4 LIIAGTTIGAGMLALPTSTAGAWFIW--TLLLLILLWFLMLHSGLLLLEVYLTYPGGASFNTIAKDLLGKTGNIIAGLSL 81 (381)
T ss_pred EEeehhhHhHHHHHHHHHHHhhhHHH--HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHhCHHHHHHHHHHH
Confidence 35678899999999998866543332 5666788899999999999999999999999999999999999999999999
Q ss_pred HHHHHhHHHHHHHHHHHHHhhhhhCCC---CCCcHHHHHHHHHHHHHHHHhhhhhhcCCCCchhHHHHHHHHHhh
Q psy9206 117 LLIMRPTTQAIVALTFAQYAIKPFFPD---SELPDRAVLLLAAACLCKNGNAIKPFFPDSELPDRAVLLLAAACL 188 (190)
Q Consensus 117 ~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (190)
++..+ ...++.....++++.. +++. .+.+.+ .......+++. .++.. +.+..+|.+.+++...+
T Consensus 82 ~~~~~-~~~~ay~~~~~~~l~~-~~~~~~~~~~~~~---~~~~~~~~v~~-~l~~~--G~~~~~~v~~i~~~~~l 148 (381)
T TIGR00837 82 LFVLY-ILTYAYISGGGSILSR-LIGEYFGFPWSAR---AIVLIFTVLFG-SFVWL--STSAVDRITRVLIFGKI 148 (381)
T ss_pred HHHHH-HHHHHHHHccHHHHHH-HHHHhcCCCccHH---HHHHHHHHHHH-HHHHh--chhHHHHHHHHHHHHHH
Confidence 87433 3444444444555554 2221 112222 22222222333 33443 34567788777766543
No 40
>PF03845 Spore_permease: Spore germination protein; InterPro: IPR004761 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. Spore germination protein (amino acid permease) is involved in the response to the germinative mixture of L-asparagine, glucose, fructose and potassium ions (AFFK). These proteins could be amino acid transporters.; GO: 0009847 spore germination, 0016021 integral to membrane
Probab=98.41 E-value=2.6e-05 Score=64.22 Aligned_cols=121 Identities=20% Similarity=0.198 Sum_probs=101.1
Q ss_pred ccchhHHHHHHhhhhhcchhccchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhhcccCcchHhhHHHHhCchh
Q psy9206 29 KITLLGGVSIIVGCIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTIGALCYAELGTCISRSGGDYAYILVAFGELP 108 (190)
Q Consensus 29 ~l~~~~~~~~~~~~~ig~g~~~~~~~~~~~~G~~g~~~~~~li~~i~~~~~~~~~aEl~s~~P~~GG~y~~~~~~~g~~~ 108 (190)
|+|.+|...+.+..++|++....|+.....+| . ++++-+++++......+.+..+.+++|+.. .+.+.++.+||+.
T Consensus 1 kIS~~Q~~~l~~~~~~g~~~l~~p~~l~~~~~-d--~Wi~~ll~~~~~l~~~~l~~~l~~~~p~~~-l~~~~~~~~Gk~l 76 (320)
T PF03845_consen 1 KISPRQLFFLLISSIIGTGILFLPAILAEQAG-D--AWISVLLGGLIGLLLALLIYYLLKRFPGKT-LVEISEKLFGKWL 76 (320)
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-C--cHHHHHHHHHHHHHHHHHHHHHHHHCCCCC-HHHHHHHHhCcHH
Confidence 57899999999999999999999999888875 4 567889999999999999999999999875 8999999999999
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhCCCCCCcHHHHHHHHH
Q psy9206 109 AFLRLWVALLIMRPTTQAIVALTFAQYAIKPFFPDSELPDRAVLLLAA 156 (190)
Q Consensus 109 ~~~~gw~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (190)
|...+..+.+ ++....+.....+.+.+...+.|. .|.+.......
T Consensus 77 g~ii~~~~~l-~~l~~~~~~lr~~~~~i~~~~lp~--TP~~~i~~~~l 121 (320)
T PF03845_consen 77 GKIINLLYIL-YFLLISALVLREFSEFIKTYLLPE--TPIWVIILLFL 121 (320)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhcCc--CCHHHHHHHHH
Confidence 9999988877 566788888999999998765554 34444333333
No 41
>TIGR00814 stp serine transporter. The HAAAP family includes well characterized aromatic amino acid:H+ symport permeases and hydroxy amino acid permeases. This subfamily is specific for hydroxy amino acid transporters and includes the serine permease, SdaC, of E. coli, and the threonine permease, TdcC, of E. coli.
Probab=98.24 E-value=3.8e-05 Score=65.33 Aligned_cols=95 Identities=11% Similarity=0.078 Sum_probs=64.8
Q ss_pred HHHHhhhhhcchhccchHHHHHhcccchHHHHHHHHHHHHHHHHHHH----HHHhhhhccc-CcchHhhHHHHhCchhHH
Q psy9206 36 VSIIVGCIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTIGALC----YAELGTCISR-SGGDYAYILVAFGELPAF 110 (190)
Q Consensus 36 ~~~~~~~~ig~g~~~~~~~~~~~~G~~g~~~~~~li~~i~~~~~~~~----~aEl~s~~P~-~GG~y~~~~~~~g~~~~~ 110 (190)
....+++++|+|++..|.. +|.. .++.+++..++..+..+. +.|.....|. +.+.+.++++.+||..|+
T Consensus 9 ~~~l~gt~IGaGiL~LP~~----ag~~--G~i~~li~~l~~~pl~~~~~~ll~~~~l~~~~p~~~i~~~~~~~fGk~~G~ 82 (397)
T TIGR00814 9 MLGLYGTAIGAGVLFLPIQ----AGLG--GLWVLVLMAIIAYPLTYFGHRALARFLLSSKNPCEDITEVVEEHFGKNWGI 82 (397)
T ss_pred HHHHHHHHHHHHHHHHHHH----HHhC--HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHcCHHHHH
Confidence 4556778899999998875 2333 355667777766665554 4555444454 677999999999999999
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHhh
Q psy9206 111 LRLWVALLIMRPTTQAIVALTFAQYAI 137 (190)
Q Consensus 111 ~~gw~~~~~~~~~~~a~~~~~~~~~~~ 137 (190)
+.++.|++. .............+.+.
T Consensus 83 ii~~lY~~~-~~~i~~aY~~~~~~~~~ 108 (397)
T TIGR00814 83 LITLLYFFA-IYPILLIYSVAITNDSA 108 (397)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 999999983 33454444544444443
No 42
>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. Aromatic amino acids are concentrated in the cytoplasm of Escherichia coli by 4 distinct transport systems: a general aromatic amino acid permease, and a specific permease for each of the 3 types (Phe, Tyr and Trp) []. It has been shown [] that some permeases in E. coli and related bacteria are evolutionary related. These permeases are proteins of about 400 to 420 amino acids and are located in the cytoplasmic membrane and, like bacterial sugar/cation transporters, are thought to contain 12 transmembrane (TM) regions [] - hydropathy analysis, however, is inconclusive, suggesting the possibility of 10 to 12 membrane-spanning domains []. The best conserved domain is a stretch of 20 residues which seems to be located in a cytoplasmic loop between the first and second transmembrane region.
Probab=98.22 E-value=4.4e-05 Score=64.87 Aligned_cols=108 Identities=17% Similarity=0.157 Sum_probs=84.4
Q ss_pred ccchhHHHHHHhhhhhcchhccchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhhcccCcchHhhHHHHhCchh
Q psy9206 29 KITLLGGVSIIVGCIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTIGALCYAELGTCISRSGGDYAYILVAFGELP 108 (190)
Q Consensus 29 ~l~~~~~~~~~~~~~ig~g~~~~~~~~~~~~G~~g~~~~~~li~~i~~~~~~~~~aEl~s~~P~~GG~y~~~~~~~g~~~ 108 (190)
+-+.+....+.+|+.+|+|+...|.. ....|-. +..+..+++.......++.++|.+...|+..+.-.-+++.+||..
T Consensus 2 ~~~~~~~~~li~GTaIGAGmLaLP~~-~~~~Gf~-~~~~~l~~~w~~~~~s~l~~~E~~~~~~~~~~~~~~a~~~lG~~g 79 (394)
T PF03222_consen 2 NNSILGGVLLIAGTAIGAGMLALPIA-TAGAGFL-PSLILLLIAWPLMYYSGLLLAEVSLNTPEGSSLTSMAEKYLGKKG 79 (394)
T ss_pred CchHHHHHHHHHHccHhHHHHHHHHH-HHhCchH-HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHhChHH
Confidence 45678888999999999999998766 3444532 366667888888888999999999999998888889999999999
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHhhhh
Q psy9206 109 AFLRLWVALLIMRPTTQAIVALTFAQYAIKP 139 (190)
Q Consensus 109 ~~~~gw~~~~~~~~~~~a~~~~~~~~~~~~~ 139 (190)
+++.+..+.+..+ ..........++.+.+.
T Consensus 80 ~~~~~~~~~~~~y-~ll~AYisg~g~~~~~~ 109 (394)
T PF03222_consen 80 GIVIGISYLFLLY-ALLVAYISGGGSILSSL 109 (394)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHccHHHHHHH
Confidence 9999988877444 34445555666666653
No 43
>TIGR00796 livcs branched-chain amino acid uptake carrier. transmembrane helical spanners.
Probab=98.13 E-value=0.00016 Score=61.10 Aligned_cols=137 Identities=17% Similarity=0.207 Sum_probs=90.7
Q ss_pred HhhhhhcchhccchHHHHHhcccc-hHHHHHHHHHHHHHHHHHHHHHHhhhhcccCcchHhhHHHHhCchhHHHHHHHHH
Q psy9206 39 IVGCIIGSGIFVSPAGVLAETQSV-GLSIVIWTVCGLLSTIGALCYAELGTCISRSGGDYAYILVAFGELPAFLRLWVAL 117 (190)
Q Consensus 39 ~~~~~ig~g~~~~~~~~~~~~G~~-g~~~~~~li~~i~~~~~~~~~aEl~s~~P~~GG~y~~~~~~~g~~~~~~~gw~~~ 117 (190)
-++.-.|+|.+..|.....++|+. .+++++|++.+++.-+.+.. +.|++||.|++..+.+||+.+++.+|..+
T Consensus 4 lFamffGAGNlIfPp~lG~~aG~~~~~a~lgf~ltgV~lpllgl~------av~~~gG~~~~l~~~~g~~f~~lf~~~~~ 77 (378)
T TIGR00796 4 LFALFFGAGNIIFPPMLGLAAGEHVWTAALGFLLTGVGLPLLGLI------ALALVGGGYDSLSARIGKVFGILFTVILY 77 (378)
T ss_pred HHHHHHhhhHHhhhHHHHHHhCccHHHHHHHHHHHHHHHHHHHHh------eeeecCCCHHHHHHHhChHHHHHHHHHHH
Confidence 345557899999999999999976 66777899999998887777 89999999999999999999999999988
Q ss_pred HHHHhHH----HHHHHHHHHHHhhhhhCCCCCCcHHHHHHHHHHHHHHHHhhhhhhcCCCCchhHHHHHHHHHhh
Q psy9206 118 LIMRPTT----QAIVALTFAQYAIKPFFPDSELPDRAVLLLAAACLCKNGNAIKPFFPDSELPDRAVLLLAAACL 188 (190)
Q Consensus 118 ~~~~~~~----~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (190)
....+.. ++..++.++ +. .+.|... . .....+..++...++..++. +..+..++.+-+++-.+|
T Consensus 78 l~iGP~~aiPRtaa~s~e~~--i~-p~~~~~~-~-~~~l~i~siiff~i~~~l~~--~~~k~~~~iGk~LTP~lL 145 (378)
T TIGR00796 78 LTIGPLFAIPRTATVSFEMG--IA-PLLHSPT-S-LLALFIFSLIFFAVVLLLSL--NPSKLIDRVGKFLTPALL 145 (378)
T ss_pred HHHHhchhhhHHHHHHHHHH--HH-hccCccc-c-hHHHHHHHHHHHHHHHHHHc--CcccHHHHhHHHHHHHHH
Confidence 6444444 455555544 23 2444211 1 11111211222222212233 345667888877776554
No 44
>PRK10483 tryptophan permease; Provisional
Probab=97.99 E-value=0.00039 Score=59.37 Aligned_cols=111 Identities=16% Similarity=0.091 Sum_probs=85.1
Q ss_pred cccccchhHHHHHHhhhhhcchhccchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhhcccCcchHhhHHHHhC
Q psy9206 26 MKRKITLLGGVSIIVGCIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTIGALCYAELGTCISRSGGDYAYILVAFG 105 (190)
Q Consensus 26 l~r~l~~~~~~~~~~~~~ig~g~~~~~~~~~~~~G~~g~~~~~~li~~i~~~~~~~~~aEl~s~~P~~GG~y~~~~~~~g 105 (190)
.|++.+.+....+..|+.+|+|++..|.. ....|-. ++++.++++.+.+...++.+.|.+..+|+.-+.-.-+++.+|
T Consensus 7 ~~~~~~~~g~~~iIaGT~IGaGMLaLP~~-~a~~GF~-~s~~~l~~~W~~M~~taLlllEv~l~~~~g~~~~tma~~~LG 84 (414)
T PRK10483 7 TQTSPSLLGGVVIIGGTIIGAGMFSLPVV-MSGAWFF-WSMAALIFTWFCMLHSGLMILEANLNYRIGSSFDTITKDLLG 84 (414)
T ss_pred ccCCCcHHHHHHHHHHchHhHHHHHHHHH-HHhccHH-HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHcC
Confidence 46779999999999999999999988755 4455532 467778888899999999999999999988888889999999
Q ss_pred chhHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhh
Q psy9206 106 ELPAFLRLWVALLIMRPTTQAIVALTFAQYAIKP 139 (190)
Q Consensus 106 ~~~~~~~gw~~~~~~~~~~~a~~~~~~~~~~~~~ 139 (190)
|....+.+..+.+..+ ..........++.+...
T Consensus 85 ~~g~~i~~~s~lfl~Y-~Ll~AYisg~g~il~~~ 117 (414)
T PRK10483 85 KGWNVVNGISIAFVLY-ILTYAYISASGSILHHT 117 (414)
T ss_pred hHHHHHHHHHHHHHHH-HHHHHHHhCcHHHHHHH
Confidence 9877776655555334 33444455566666653
No 45
>PRK09664 tryptophan permease TnaB; Provisional
Probab=97.87 E-value=0.00074 Score=57.66 Aligned_cols=106 Identities=14% Similarity=0.104 Sum_probs=79.6
Q ss_pred chhHHHHHHhhhhhcchhccchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhhcccCcchHhhHHHHhCchhHH
Q psy9206 31 TLLGGVSIIVGCIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTIGALCYAELGTCISRSGGDYAYILVAFGELPAF 110 (190)
Q Consensus 31 ~~~~~~~~~~~~~ig~g~~~~~~~~~~~~G~~g~~~~~~li~~i~~~~~~~~~aEl~s~~P~~GG~y~~~~~~~g~~~~~ 110 (190)
+......+..|+++|+|++..|.. ....|-. ++.+.++++.+.+...++.+.|.+..+|+.-+.-.-+++.+||..-.
T Consensus 10 ~~~gg~~iIaGT~IGAGMLaLP~~-~a~~Gf~-~s~~ll~~~w~~M~~t~LlllEv~l~~~~g~~l~tma~~~LG~~g~~ 87 (415)
T PRK09664 10 SAFWGVMVIAGTVIGGGMFALPVD-LAGAWFF-WGAFILIIAWFSMLHSGLLLLEANLNYPVGSSFNTITKDLIGNTWNI 87 (415)
T ss_pred chhhhhHHhhhccHhHHHHHHHHH-HhcccHH-HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHcChHHHH
Confidence 666688999999999999988755 4444532 46667888888999999999999999998888888999999998777
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHhhhh
Q psy9206 111 LRLWVALLIMRPTTQAIVALTFAQYAIKP 139 (190)
Q Consensus 111 ~~gw~~~~~~~~~~~a~~~~~~~~~~~~~ 139 (190)
+.+..+.+..+ ..+.......++.+...
T Consensus 88 i~~~~~~fl~Y-~Ll~AYisggG~il~~~ 115 (415)
T PRK09664 88 ISGITVAFVLY-ILTYAYISANGAIISET 115 (415)
T ss_pred HHHHHHHHHHH-HHHHHHHhccHHHHHHH
Confidence 76665554233 33444555556666553
No 46
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism]
Probab=97.69 E-value=0.0022 Score=54.91 Aligned_cols=111 Identities=15% Similarity=0.152 Sum_probs=86.6
Q ss_pred ccccccchhHHHHHHhhhhhcchhccchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhhcccCc-chHhhHHHH
Q psy9206 25 QMKRKITLLGGVSIIVGCIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTIGALCYAELGTCISRSG-GDYAYILVA 103 (190)
Q Consensus 25 ~l~r~l~~~~~~~~~~~~~ig~g~~~~~~~~~~~~G~~g~~~~~~li~~i~~~~~~~~~aEl~s~~P~~G-G~y~~~~~~ 103 (190)
+.+++-+.++......++++|+|+...|.. ....| -.+.+...++++.......+.+.|.....|+.. +.+.-+++.
T Consensus 4 ~~~~~~s~~~~vl~l~gT~IGAGvL~lP~a-~~~~G-~~~~l~~l~i~~~~t~~s~~~l~~~~~~~~~~~~~~~~~~~~~ 81 (415)
T COG0814 4 SMKKTSSDLGGVLILAGTAIGAGVLFLPVA-FGGGG-FWPGLLLLIIAWPLTYLSLLLLLEALLSSPNGKASITSLVEDY 81 (415)
T ss_pred cccCCcchHHHHHHHHccccccchhhhhHH-hcCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHH
Confidence 455667788889999999999999998654 44444 234566688888999999999999999999984 888899999
Q ss_pred hCchhHHHHHHHHHHHHHhHHHHHHHHHHHHHhhh
Q psy9206 104 FGELPAFLRLWVALLIMRPTTQAIVALTFAQYAIK 138 (190)
Q Consensus 104 ~g~~~~~~~gw~~~~~~~~~~~a~~~~~~~~~~~~ 138 (190)
+||.++++.+-.+.+. ......+.....++.+.+
T Consensus 82 ~G~~~~~li~~s~~~~-~~~~~~aY~~~~g~~l~~ 115 (415)
T COG0814 82 LGKKGGILIGLSYFFA-LYGLLVAYIVGIGNLLAS 115 (415)
T ss_pred hCcchHHHHHHHHHHH-HHHHHHHHHhcchhHHHH
Confidence 9999999999887773 334455556666666665
No 47
>PRK15132 tyrosine transporter TyrP; Provisional
Probab=97.59 E-value=0.0029 Score=53.95 Aligned_cols=105 Identities=17% Similarity=0.198 Sum_probs=77.1
Q ss_pred chhHHHHHHhhhhhcchhccchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhhcccCcchHhhHHHHhCchhHH
Q psy9206 31 TLLGGVSIIVGCIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTIGALCYAELGTCISRSGGDYAYILVAFGELPAF 110 (190)
Q Consensus 31 ~~~~~~~~~~~~~ig~g~~~~~~~~~~~~G~~g~~~~~~li~~i~~~~~~~~~aEl~s~~P~~GG~y~~~~~~~g~~~~~ 110 (190)
+.....++..|+.+|+|+...|.. ....|-. +.++..+++.......+..++|.+..+|..-+...-+++.+||..++
T Consensus 4 ~~~g~~~li~GTaIGAGmLaLPi~-~~~~Gf~-~~~~~li~~w~~m~~t~l~l~Ev~~~~~~~~~~~~~a~~~LG~~g~~ 81 (403)
T PRK15132 4 RTLGSIFIVAGTTIGAGMLAMPLA-AAGVGFS-VTLILLIGLWALMCYTALLLLEVYQHVPADTGLGTLAKRYLGRYGQW 81 (403)
T ss_pred cHHHHHHHHHhcchhHHHHHHHHH-HHhChHH-HHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHhChHHHH
Confidence 566778889999999999998755 3344532 35555677777677788889999888887777888899999999999
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHhhh
Q psy9206 111 LRLWVALLIMRPTTQAIVALTFAQYAIK 138 (190)
Q Consensus 111 ~~gw~~~~~~~~~~~a~~~~~~~~~~~~ 138 (190)
+....|.+..+ ..+.......++.+..
T Consensus 82 i~~~~y~fl~y-~ll~AYisg~g~il~~ 108 (403)
T PRK15132 82 LTGFSMMFLMY-ALTAAYISGAGELLAS 108 (403)
T ss_pred HHHHHHHHHHH-HHHHHHHhCcHHHHHH
Confidence 99988877333 3444455554444433
No 48
>PRK13629 threonine/serine transporter TdcC; Provisional
Probab=97.41 E-value=0.017 Score=49.82 Aligned_cols=106 Identities=14% Similarity=0.118 Sum_probs=70.8
Q ss_pred ccccchhHHHHHHhhhhhcchhccchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhhc-ccCcchHhhHHHHhC
Q psy9206 27 KRKITLLGGVSIIVGCIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTIGALCYAELGTCI-SRSGGDYAYILVAFG 105 (190)
Q Consensus 27 ~r~l~~~~~~~~~~~~~ig~g~~~~~~~~~~~~G~~g~~~~~~li~~i~~~~~~~~~aEl~s~~-P~~GG~y~~~~~~~g 105 (190)
+|.-..| ....+|+.+|+|+...|-. ....|- .+.++..+++..+.......++|..... |+..+.-.-+++.+|
T Consensus 18 ~~~d~~W--~l~l~GTAIGAGmLfLPI~-~g~~Gf-~p~lillll~~p~m~~s~l~L~e~~L~~~~~~~~i~~v~~~~lG 93 (443)
T PRK13629 18 RKSDTTW--TLGLFGTAIGAGVLFFPIR-AGFGGL-IPILLMLVLAYPIAFYCHRALARLCLSGSNPSGNITETVEEHFG 93 (443)
T ss_pred ccccchH--HHHHHHHHHhHHHHHHHHH-HhcchH-HHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCHHHHHHHHcC
Confidence 3444444 3556778899999988655 333342 2355557777777778889999999998 555556677888999
Q ss_pred chhHHHHHHHHHHHHHhHHHHHHHHHHHHHhh
Q psy9206 106 ELPAFLRLWVALLIMRPTTQAIVALTFAQYAI 137 (190)
Q Consensus 106 ~~~~~~~gw~~~~~~~~~~~a~~~~~~~~~~~ 137 (190)
|..+.+.+..|.+..++ .+......+.+.+.
T Consensus 94 ~~g~~i~~ilYff~ly~-ll~aY~~~itn~l~ 124 (443)
T PRK13629 94 KTGGVVITFLYFFAICP-LLWIYGVTITNTFM 124 (443)
T ss_pred hhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 99999999888873332 23333344444443
No 49
>PF01235 Na_Ala_symp: Sodium:alanine symporter family; InterPro: IPR001463 Sodium symporters can be divided by sequence and functional similarity into various groups. One such group is the sodium/alanine symporter family, the members of which transport alanine in association with sodium ions. These transporters are believed to possess 8 transmembrane (TM) helices [, ], forming a channel or pore through the cytoplasmic membrane, the interior face being hydrophilic to allow the passage of alanine molecules and sodium ions []. This family is restricted to the bacteria and archaea, examples are the alanine carrier protein from the Bacillus PS3 (Thermophilic bacterium PS-3); the D-alanine/glycine permease from Pseudoalteromonas haloplanktis (Alteromonas haloplanktis); and the hypothetical protein yaaJ from Escherichia coli.; GO: 0005283 sodium:amino acid symporter activity, 0006814 sodium ion transport, 0016020 membrane
Probab=97.33 E-value=0.01 Score=50.68 Aligned_cols=82 Identities=18% Similarity=0.287 Sum_probs=59.5
Q ss_pred cccccccchhHHHHHHhhhhhcchhccchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhhccc-------Ccch
Q psy9206 24 VQMKRKITLLGGVSIIVGCIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTIGALCYAELGTCISR-------SGGD 96 (190)
Q Consensus 24 ~~l~r~l~~~~~~~~~~~~~ig~g~~~~~~~~~~~~G~~g~~~~~~li~~i~~~~~~~~~aEl~s~~P~-------~GG~ 96 (190)
++-+++++.+|.++.+.+..+|.|-......+...+|| |...|.| +.+++...+.++=.-|+..|.+ .||.
T Consensus 13 ~~~~g~iS~fqA~~~ala~~vG~GNI~GVa~AI~~GGP-GAiFWMW-i~a~~Gmatk~~E~~La~~yR~~~~~G~~~GGP 90 (416)
T PF01235_consen 13 KEEEGGISPFQALCTALAGTVGTGNIAGVATAIAIGGP-GAIFWMW-ISALLGMATKYAEVTLAQKYREKDEDGEYRGGP 90 (416)
T ss_pred CCCCCCcChHHHHHHHHHhccCcchHHHHHHHHHhhch-hHHHHHH-HHHHHHHHHHHHHHHHHHHheEECCCCCEeecH
Confidence 34456799999999999999999988776676655554 4344444 4555666666766667776653 4788
Q ss_pred HhhHHHHhCch
Q psy9206 97 YAYILVAFGEL 107 (190)
Q Consensus 97 y~~~~~~~g~~ 107 (190)
..|.++.++.+
T Consensus 91 ~yyi~~gl~~k 101 (416)
T PF01235_consen 91 MYYIEKGLGSK 101 (416)
T ss_pred HHHHHHHhccc
Confidence 99999988765
No 50
>KOG2083|consensus
Probab=97.24 E-value=0.0014 Score=57.50 Aligned_cols=154 Identities=16% Similarity=0.097 Sum_probs=100.5
Q ss_pred ccccchhHHHHHHhhh-hhcchhccchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhhcc-cCcchHhhHHHHh
Q psy9206 27 KRKITLLGGVSIIVGC-IIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTIGALCYAELGTCIS-RSGGDYAYILVAF 104 (190)
Q Consensus 27 ~r~l~~~~~~~~~~~~-~ig~g~~~~~~~~~~~~G~~g~~~~~~li~~i~~~~~~~~~aEl~s~~P-~~GG~y~~~~~~~ 104 (190)
+-++++++-.....-. +-|.=.|.-.+-+..++|-. ..++...++..+....++|-.-+++.=. +.||.|.-++|..
T Consensus 27 ~v~fg~~~gv~~~cmlni~gv~lflrl~wivgqagi~-~~~~ii~~~~~vt~it~lSa~~I~t~~~vk~Gg~yflis~sl 105 (643)
T KOG2083|consen 27 PVLFGWWDGVFVRCMLNIFGVILFLRLGWIVGQAGIG-NSVLIIGLTTVVTLITVLSAIAIVTRGQVKSGGVYFLISRSL 105 (643)
T ss_pred ceEEeeeehhhhhhhHHHHHHHHhhhhhheeecchhh-hhHHHHHHHHHHHHHHHHhHheeeecceeccCcEEEEEEecc
Confidence 3458888776552221 21222233344445566632 3455556667777777888777777554 6899999999999
Q ss_pred CchhHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhCCCCCCcHHHHHHHHHHHHHHHHhhhhhhcCCCCchhHHHHHHH
Q psy9206 105 GELPAFLRLWVALLIMRPTTQAIVALTFAQYAIKPFFPDSELPDRAVLLLAAACLCKNGNAIKPFFPDSELPDRAVLLLA 184 (190)
Q Consensus 105 g~~~~~~~gw~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (190)
|+-.|--.|-+|.+ +...+++.....+++-+...+ ..+ ..+...-++.+.++++. .+|....+|+ +++|.++.
T Consensus 106 g~efggsigiIy~f-~~aVa~am~~vgfaEsv~~l~-~~~--s~~~i~gi~~vt~~ill-~i~~ag~~w~--~k~q~~ll 178 (643)
T KOG2083|consen 106 GPEFGGSIGIIYAF-ANAVATAMYVVGFAESVAHLF-ETE--SKEMIDGIGSVTVLILL-AINVAGVEWE--AKLQIVLL 178 (643)
T ss_pred cccccchhHHHHHH-HHHHHHHHhhhhHHHHHHHHH-Hhc--cHHHhcchhHHHHHHHH-HhhhccchhH--HHHHHHHH
Confidence 99999988988888 677889999999999988743 322 23333335554444444 5666655555 78887776
Q ss_pred HHhh
Q psy9206 185 AACL 188 (190)
Q Consensus 185 ~~~~ 188 (190)
.+++
T Consensus 179 ~il~ 182 (643)
T KOG2083|consen 179 LILL 182 (643)
T ss_pred HHHH
Confidence 6654
No 51
>KOG1303|consensus
Probab=97.08 E-value=0.013 Score=50.49 Aligned_cols=111 Identities=16% Similarity=0.098 Sum_probs=79.1
Q ss_pred ccccccchhHHHHHHhhhhhcchhccchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhhcccCcc-----hHhh
Q psy9206 25 QMKRKITLLGGVSIIVGCIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTIGALCYAELGTCISRSGG-----DYAY 99 (190)
Q Consensus 25 ~l~r~l~~~~~~~~~~~~~ig~g~~~~~~~~~~~~G~~g~~~~~~li~~i~~~~~~~~~aEl~s~~P~~GG-----~y~~ 99 (190)
..+|.-++++.....++.++|.|+...|.. ..+.|=. +.+...++.+++.+-.++.+.++-...|.-.| .-.-
T Consensus 33 ~~~~~~s~~~a~~~~i~~~~G~gvLsLP~A-~~~lGW~-~G~~~Ll~~~iit~YT~~LL~~~~~~~~~~~~~r~~~Y~dl 110 (437)
T KOG1303|consen 33 TPSRGGSWWQAAFHIINALIGAGVLSLPYA-LAQLGWI-SGIVILLLFAIITLYTATLLSRCWEMHEAVPGKRRYRYPDL 110 (437)
T ss_pred ccCCCCcceehhhheehhhhhhhhhhhHHH-HHhCchH-HHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccCCChHHH
Confidence 347889999999999999999999988744 5565522 23556788888888888888888888887777 3444
Q ss_pred HHHHhCchhHHHHHHHHHHHHHhHHHHHHHHHHHHHhhh
Q psy9206 100 ILVAFGELPAFLRLWVALLIMRPTTQAIVALTFAQYAIK 138 (190)
Q Consensus 100 ~~~~~g~~~~~~~gw~~~~~~~~~~~a~~~~~~~~~~~~ 138 (190)
.+++||++.-+++++.... .....+.......++.+..
T Consensus 111 ~~~afG~~~~~iv~~~~~~-~~fg~~v~y~il~~~~L~~ 148 (437)
T KOG1303|consen 111 GQAAFGPKGRLLVSVLQYL-ELFGICVVYIILAGDNLKA 148 (437)
T ss_pred HHHHhCCCceEeeeHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 5678998887777777665 2223333344555555554
No 52
>TIGR00835 agcS amino acid carrier protein. Members of the AGCS family transport alanine and/or glycine in symport with Na+ and or H+.
Probab=96.78 E-value=0.12 Score=44.53 Aligned_cols=107 Identities=16% Similarity=0.165 Sum_probs=62.7
Q ss_pred cccchhHHHHHHhhhhhcchhccchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhhccc--C-----cchHhhH
Q psy9206 28 RKITLLGGVSIIVGCIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTIGALCYAELGTCISR--S-----GGDYAYI 100 (190)
Q Consensus 28 r~l~~~~~~~~~~~~~ig~g~~~~~~~~~~~~G~~g~~~~~~li~~i~~~~~~~~~aEl~s~~P~--~-----GG~y~~~ 100 (190)
++++.++.++.+.+..+|.|-......+...+|| |...|.|+ .+++...+.++-.-++..+.+ + ||.-.|.
T Consensus 45 g~iS~fqA~~~ala~~VG~GnI~Gva~Ai~~GGp-GAvFWMWI-~allGm~~~~~e~~L~~~yr~~~~~g~~~GGP~yyi 122 (425)
T TIGR00835 45 GGVSSFQALFTSLAARVGIGNIVGVATAIAIGGP-GAVFWMWV-TAFIGMATKFVESTLAQKYRERDADGVFRGGPMYYI 122 (425)
T ss_pred CCccHHHHHHHHHHHHHhhhHHHHHHHHHHhcCC-CchHHHHH-HHHHHHHHHHHHHHHHHHeeeeCCCCCEecChHHHH
Confidence 4599999999999999999844443444656564 43555554 444455555555556665542 2 3444777
Q ss_pred HHHh-CchhHHHHHHHHHHHHHhHHHHHHHHHHHHHhh
Q psy9206 101 LVAF-GELPAFLRLWVALLIMRPTTQAIVALTFAQYAI 137 (190)
Q Consensus 101 ~~~~-g~~~~~~~gw~~~~~~~~~~~a~~~~~~~~~~~ 137 (190)
++.+ +|+++.+.... .+.+.............+.+.
T Consensus 123 ~~gl~~k~lg~lfa~~-~i~~f~~~~~~Q~nsi~~~~~ 159 (425)
T TIGR00835 123 KKGLGMRWLAVLFAVF-LIASFGIGNMVQANAIASALS 159 (425)
T ss_pred HHHhCccHHHHHHHHH-HHHHHhhhHHHHHHHHHHHHH
Confidence 7765 47777665544 221222233444555555555
No 53
>PTZ00206 amino acid transporter; Provisional
Probab=96.38 E-value=0.21 Score=43.49 Aligned_cols=102 Identities=8% Similarity=0.064 Sum_probs=63.7
Q ss_pred hHHHHHHhhhhhcchhccchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhhcccCcchHhhHHHHhCchhHHHH
Q psy9206 33 LGGVSIIVGCIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTIGALCYAELGTCISRSGGDYAYILVAFGELPAFLR 112 (190)
Q Consensus 33 ~~~~~~~~~~~ig~g~~~~~~~~~~~~G~~g~~~~~~li~~i~~~~~~~~~aEl~s~~P~~GG~y~~~~~~~g~~~~~~~ 112 (190)
.+...--...++|+|+...|.. ..+.|-. +.++..++.+++.......+.+.+... +.-....-.++.+||+..+++
T Consensus 63 ~~s~fnL~~~~iGaGILsLP~A-f~~~G~v-~giillil~a~ls~ys~~lL~~~~~~~-~~~sY~~la~~~~G~~g~~~v 139 (467)
T PTZ00206 63 AASAFNIASSTVGAGIVGLPSA-ANSSGLV-MAMIYLIIITAMTIFSIYALGVAADKT-NIRTYEGVARVLLGPWGSYYV 139 (467)
T ss_pred HHHHHHHHHHHHhHHHHHHHHH-HHHhhHH-HHHHHHHHHHHHHHHHHHHHHHHhccC-CCCCHHHHHHHHhCHHHHHHH
Confidence 4444556666789999988655 5555532 244445556666655556666665543 333344455667999999998
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHhhh
Q psy9206 113 LWVALLIMRPTTQAIVALTFAQYAIK 138 (190)
Q Consensus 113 gw~~~~~~~~~~~a~~~~~~~~~~~~ 138 (190)
.....+ .....+.+.....++.+..
T Consensus 140 ~~~~~~-~~~G~cv~YlIiigd~l~~ 164 (467)
T PTZ00206 140 AATRAF-HGFSACVAYVISVGDILSA 164 (467)
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 877766 3335556666667776665
No 54
>COG1115 AlsT Na+/alanine symporter [Amino acid transport and metabolism]
Probab=96.10 E-value=0.63 Score=40.11 Aligned_cols=87 Identities=20% Similarity=0.247 Sum_probs=61.6
Q ss_pred ccccccchhHHHHHHhhhhhcchhccchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhhccc-------CcchH
Q psy9206 25 QMKRKITLLGGVSIIVGCIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTIGALCYAELGTCISR-------SGGDY 97 (190)
Q Consensus 25 ~l~r~l~~~~~~~~~~~~~ig~g~~~~~~~~~~~~G~~g~~~~~~li~~i~~~~~~~~~aEl~s~~P~-------~GG~y 97 (190)
+-++.++.++.++.+.+..+|+|-......+...+|| |...|.|+. ++....+.++=+-|+..|.+ .||.-
T Consensus 58 ~~~~~vS~FqAl~~sla~~VGtGNIaGVAtAI~~GGP-GAvFWMWi~-Al~Gmat~f~E~~La~~Yr~kd~~G~~~GGP~ 135 (452)
T COG1115 58 AGKGGVSSFQALMTSLAARVGTGNIAGVATAIALGGP-GAVFWMWIV-ALFGMATKFAESTLAQKYRVKDKDGEYRGGPA 135 (452)
T ss_pred CCCCCcChHHHHHHHHHhccCcchHHHHHHHHHcCCC-ccHHHHHHH-HHHHHHHHHHHHHHHhheeEeCCCCCCcCChH
Confidence 4567799999999999999999988776666655554 535555554 45556677777778887762 36788
Q ss_pred hhHHHHhCc-hhHHHHH
Q psy9206 98 AYILVAFGE-LPAFLRL 113 (190)
Q Consensus 98 ~~~~~~~g~-~~~~~~g 113 (190)
+|.++.+|. +++-+.+
T Consensus 136 yYi~kGl~~r~l~v~FA 152 (452)
T COG1115 136 YYIEKGLGMRWLAVLFA 152 (452)
T ss_pred HHHHhhcCCcHHHHHHH
Confidence 899998873 4444443
No 55
>KOG2082|consensus
Probab=95.83 E-value=0.053 Score=49.31 Aligned_cols=76 Identities=18% Similarity=0.213 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhcc-cCcchHhhHHHHhCchhHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhCC
Q psy9206 66 IVIWTVCGLLSTIGALCYAELGTCIS-RSGGDYAYILVAFGELPAFLRLWVALLIMRPTTQAIVALTFAQYAIKPFFP 142 (190)
Q Consensus 66 ~~~~li~~i~~~~~~~~~aEl~s~~P-~~GG~y~~~~~~~g~~~~~~~gw~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 142 (190)
+..-+++....++++.|++-+++.=- .+||.|.-++|.+||-.|-.+|-.+.+ +..++.+..-....+.+..+.+|
T Consensus 150 fllv~iCC~cTmLTaISmSAIATNGVVpaGGsYfmISRsLGPEFGgAVGlcFYL-gtT~AaaMYIlGaVEi~L~Yi~P 226 (1075)
T KOG2082|consen 150 FLLVFICCLCTMLTAISMSAIATNGVVPAGGSYFMISRSLGPEFGGAVGLCFYL-GTTVAAAMYILGAVEIFLTYIFP 226 (1075)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCcccCCCeeEEEecccCccccceeeehhhh-hhHHHHHHHHHhHHHHHHHHHcc
Confidence 33345566666678888888887433 479999999999999999888877776 66666676666777766665544
No 56
>TIGR00800 ncs1 NCS1 nucleoside transporter family. The NCS1 family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.
Probab=93.82 E-value=3 Score=35.98 Aligned_cols=92 Identities=14% Similarity=0.087 Sum_probs=48.8
Q ss_pred cccccccchhHHHHHHhhhhhcchhccchHHHHHhcc-cchHHHHHHHHHHHHHHHHHHHHHHhhhhcccCcchHhhHHH
Q psy9206 24 VQMKRKITLLGGVSIIVGCIIGSGIFVSPAGVLAETQ-SVGLSIVIWTVCGLLSTIGALCYAELGTCISRSGGDYAYILV 102 (190)
Q Consensus 24 ~~l~r~l~~~~~~~~~~~~~ig~g~~~~~~~~~~~~G-~~g~~~~~~li~~i~~~~~~~~~aEl~s~~P~~GG~y~~~~~ 102 (190)
++-+|+-++++.+.+=++..+...-+..- ......| +...++++-+++.++........+..+.++-.. +....+.
T Consensus 8 p~~~R~~~~~~~~~~W~~~~~~v~~~~~G-a~l~~~GLs~~~ailai~lG~~i~~~~~~l~~~~G~r~Gl~--~~v~sR~ 84 (442)
T TIGR00800 8 KEEERTWSFLNYFSLWLGAAFNIATWAIG-ALGLPLGLSWWQSVIAIILGNLLGGIFVALNSRAGAKYGLP--FPVLSRA 84 (442)
T ss_pred CcccCCccHHHHHHHHHHHhhhHHHHHHH-HHHHhcCCcHHHHHHHHHHHHHHHHHHHHHhhhhHHHhCCC--cchhhhh
Confidence 44456778888888766655432222221 1122222 112234444444444444444555555544332 5667778
Q ss_pred HhCchhHHHHHHHHHH
Q psy9206 103 AFGELPAFLRLWVALL 118 (190)
Q Consensus 103 ~~g~~~~~~~gw~~~~ 118 (190)
.||.+-+.+.....++
T Consensus 85 ~FG~~Gs~~~~~~~~i 100 (442)
T TIGR00800 85 SFGIYGSLLPSLLRIV 100 (442)
T ss_pred hhhhhHhHHHHHHHHH
Confidence 8998888777766555
No 57
>PRK11375 allantoin permease; Provisional
Probab=93.65 E-value=4.6 Score=35.43 Aligned_cols=93 Identities=11% Similarity=0.049 Sum_probs=44.6
Q ss_pred ccccccccccchhHHHHHHhhhhhcchhccchHHHHHhcc-cchHHHHHHHHHHHHHHHHHHHHHHhhhhcccCcchHhh
Q psy9206 21 PIKVQMKRKITLLGGVSIIVGCIIGSGIFVSPAGVLAETQ-SVGLSIVIWTVCGLLSTIGALCYAELGTCISRSGGDYAY 99 (190)
Q Consensus 21 ~~~~~l~r~l~~~~~~~~~~~~~ig~g~~~~~~~~~~~~G-~~g~~~~~~li~~i~~~~~~~~~aEl~s~~P~~GG~y~~ 99 (190)
+..++-+|+-++++.+.+=++..+..+.+...+..+ ..| +...++++.+++.++........+-.+.++.. +....
T Consensus 18 ~pvp~~~Rt~~~~~~~~~W~g~~~~i~~~~~~g~~l-~~GLs~~~ai~ai~lG~~i~~~~~~l~g~~G~~~Gl--~~~v~ 94 (484)
T PRK11375 18 LPKTQSQRTWKTFNYFTLWMGSVHNVPNYVMVGGFF-ILGLSTFSIMLAIILSAFFIAAVMVLNGAAGSKYGV--PFAMI 94 (484)
T ss_pred CcCCccccCCcHHHHHHHHHHHhccHHHHHHHHHHH-HccchHHHHHHHHHHHHHHHHHHHHHhcccccccCC--ChhHh
Confidence 334455788889998888666554322221222222 222 11112333333333333333333333333322 35567
Q ss_pred HHHHhCchhHHHHHHHH
Q psy9206 100 ILVAFGELPAFLRLWVA 116 (190)
Q Consensus 100 ~~~~~g~~~~~~~gw~~ 116 (190)
.+..||.+-+.+.....
T Consensus 95 sR~sFG~~Gs~l~~~~r 111 (484)
T PRK11375 95 LRASYGVRGALFPGLLR 111 (484)
T ss_pred HHHHHccccchHHHHHH
Confidence 77788876555555443
No 58
>COG1457 CodB Purine-cytosine permease and related proteins [Nucleotide transport and metabolism]
Probab=93.22 E-value=2.7 Score=36.43 Aligned_cols=92 Identities=13% Similarity=0.030 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhcccCcchHhhHHHHhCchhHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhCCCC
Q psy9206 65 SIVIWTVCGLLSTIGALCYAELGTCISRSGGDYAYILVAFGELPAFLRLWVALLIMRPTTQAIVALTFAQYAIKPFFPDS 144 (190)
Q Consensus 65 ~~~~~li~~i~~~~~~~~~aEl~s~~P~~GG~y~~~~~~~g~~~~~~~gw~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 144 (190)
++++.+++.++-.......++++...... |..-++..||.+-+++..-..++ ......+......++.... ..
T Consensus 54 si~aillG~llG~i~~A~~s~~Ga~~Glp--qmi~sR~~fG~~Gs~l~sll~~~-~~iGW~~v~~~l~~~a~~~----~~ 126 (442)
T COG1457 54 SLLAILLGNLLGGIFMAYFSYQGARTGLP--QMILSRYPFGVKGSILPSLLNGI-TLIGWFGVNVILSGIAIGS----GT 126 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccccCCC--hheeecccccchhHHHHHHHHHH-HHhhHHHHHHHHhcccccc----CC
Confidence 34444555555444555555655544332 34444556888877776655554 2222333333334443221 22
Q ss_pred CCcHHHHHHHHHHHHHHHH
Q psy9206 145 ELPDRAVLLLAAACLCKNG 163 (190)
Q Consensus 145 ~~~~~~~~~~~~~~l~~~~ 163 (190)
..+.+...++..++.++.+
T Consensus 127 ~~~~~~~ili~g~l~~l~~ 145 (442)
T COG1457 127 GLPVWAGILIIGVLMTLVT 145 (442)
T ss_pred CCcHHHHHHHHHHHHHHHH
Confidence 3344554544444444444
No 59
>PLN03074 auxin influx permease; Provisional
Probab=91.90 E-value=5.7 Score=34.79 Aligned_cols=83 Identities=13% Similarity=0.093 Sum_probs=47.9
Q ss_pred cchhHHHHHHhhhhhcchhccchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHH----HhhhhcccCcchH-----hhH
Q psy9206 30 ITLLGGVSIIVGCIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTIGALCYA----ELGTCISRSGGDY-----AYI 100 (190)
Q Consensus 30 l~~~~~~~~~~~~~ig~g~~~~~~~~~~~~G~~g~~~~~~li~~i~~~~~~~~~a----El~s~~P~~GG~y-----~~~ 100 (190)
-+..+...-.....+|.|+...|.. ..+.|-. +.++..++.+++..-..+.+. |...+.|+.+-.| .|-
T Consensus 46 ~s~~~~~~~l~~~~vG~GILaLP~A-f~~~G~v-~Gii~lv~~~~l~~Yt~~lL~~~~~~~~~r~~~~~~~~~~~~~~~~ 123 (473)
T PLN03074 46 GSVYDAWFSCASNQVAQVLLTLPYS-FSQLGML-SGILFQIFYGLLGSWTAYLISVLYVEYRARKEREKVDFKNHVIQWF 123 (473)
T ss_pred chHHHHHHHHHHHHHhHHHHhHHHH-HHHccHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcCCCchhHHHHHHH
Confidence 4444444446677789999988755 5566632 245556666666655555544 4555566544222 222
Q ss_pred ---HHHhCchhHHHHHH
Q psy9206 101 ---LVAFGELPAFLRLW 114 (190)
Q Consensus 101 ---~~~~g~~~~~~~gw 114 (190)
.+.+||.+..+...
T Consensus 124 e~~~~~~G~~~~~~~~~ 140 (473)
T PLN03074 124 EVLDGLLGPYWKNVGLA 140 (473)
T ss_pred HHHHHhcChhHHHHHHH
Confidence 33578887766643
No 60
>KOG1288|consensus
Probab=90.38 E-value=0.5 Score=42.90 Aligned_cols=86 Identities=13% Similarity=0.129 Sum_probs=59.7
Q ss_pred HHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhhcc-cCcchHhhHHHHhCchhHHHHHHHHHHHHHhHHHHHHHHH
Q psy9206 53 AGVLAETQSVGLSIVIWTVCGLLSTIGALCYAELGTCIS-RSGGDYAYILVAFGELPAFLRLWVALLIMRPTTQAIVALT 131 (190)
Q Consensus 53 ~~~~~~~G~~g~~~~~~li~~i~~~~~~~~~aEl~s~~P-~~GG~y~~~~~~~g~~~~~~~gw~~~~~~~~~~~a~~~~~ 131 (190)
+.+..++|-.- .+.-++++-.+.+++.++..-+++.=- +.||.|.-++|.+||-.|--.|-.+.+ +.++.++.....
T Consensus 91 gfIvG~aGll~-Tll~lliaY~I~llTvlSicAIsTNGaV~GGGaYymISRsLGpEfGGSIGllFf~-anV~~~am~isG 168 (945)
T KOG1288|consen 91 GFIVGQAGLLK-TLLMLLIAYAILLLTVLSICAISTNGAVRGGGAYYMISRSLGPEFGGSIGLLFFV-ANVFNCAMNISG 168 (945)
T ss_pred hhhhcchHHHH-HHHHHHHHHHHHHHHHHHHhhhccCCceecCceEEEEEcccCcccCCeeeehhhH-HHHhcchhhhhh
Confidence 34444444221 333466677777777888888877443 678999999999999888777766666 666788887777
Q ss_pred HHHHhhhhh
Q psy9206 132 FAQYAIKPF 140 (190)
Q Consensus 132 ~~~~~~~~~ 140 (190)
+.+-+...+
T Consensus 169 ~vE~il~nf 177 (945)
T KOG1288|consen 169 FVEPILDNF 177 (945)
T ss_pred hhHHHHHhc
Confidence 777776544
No 61
>KOG1304|consensus
Probab=90.36 E-value=11 Score=32.71 Aligned_cols=111 Identities=13% Similarity=0.116 Sum_probs=63.6
Q ss_pred ccccchhHHHHHHhhhhhcchhccchHHHHHhcccchHHHHHHHHHHHHHHH---HHHHHHHhhhhcccC----------
Q psy9206 27 KRKITLLGGVSIIVGCIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTI---GALCYAELGTCISRS---------- 93 (190)
Q Consensus 27 ~r~l~~~~~~~~~~~~~ig~g~~~~~~~~~~~~G~~g~~~~~~li~~i~~~~---~~~~~aEl~s~~P~~---------- 93 (190)
++-.+..+.+.--+-.++|+|++..|.. ....|-....+...+++.+...+ +..+--+++.+.-++
T Consensus 44 ~~~~s~~~tl~hl~k~~iGtG~l~lP~A-Fk~sG~~~G~~~~~~i~~l~~yc~~~LVk~~~~L~~~~~~~~~~y~~~~~~ 122 (449)
T KOG1304|consen 44 EHPTSATQTLIHLLKGSIGTGILSLPLA-FKNSGLVMGLLLTVFIGFLCTYCMHLLVKCSHKLCKRFRGPSLDYAETAES 122 (449)
T ss_pred CCCCchHHHHHHHHHhhhccccccChHH-HHhcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCccccHHHHHHH
Confidence 3447777877777888899999988755 66666332122224444443333 233344444443111
Q ss_pred --cchHhhHHHHhCchhHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhh
Q psy9206 94 --GGDYAYILVAFGELPAFLRLWVALLIMRPTTQAIVALTFAQYAIKPF 140 (190)
Q Consensus 94 --GG~y~~~~~~~g~~~~~~~gw~~~~~~~~~~~a~~~~~~~~~~~~~~ 140 (190)
.+.|.| .|.+||+..+++-....+ .....++......++-+++.+
T Consensus 123 a~~~~~~~-~r~~g~~~r~~V~~~L~i-~QlGfc~vY~VFva~nl~~i~ 169 (449)
T KOG1304|consen 123 AMEGGPGW-LRKYGPAARFVVNFFLVI-TQLGFCCVYLVFVATNLKQIV 169 (449)
T ss_pred HHcCCcHH-HHhhcHHHHHHHHHHHHH-HHhchhhEEeeeHHhhHHHHH
Confidence 112225 677888888887755555 454556666666677777643
No 62
>TIGR00813 sss transporter, SSS family. have different numbers of TMSs. A 13 TMS topology with a periplasmic N-terminus and a cytoplasmic C-terminus has been experimentally determined for the proline:Na+ symporter, PutP, of E. coli.
Probab=89.73 E-value=12 Score=31.85 Aligned_cols=148 Identities=12% Similarity=-0.039 Sum_probs=77.8
Q ss_pred ccccchhHHHHHHhhhhhcchhccchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhhcccCcchHhhHHHHhCc
Q psy9206 27 KRKITLLGGVSIIVGCIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTIGALCYAELGTCISRSGGDYAYILVAFGE 106 (190)
Q Consensus 27 ~r~l~~~~~~~~~~~~~ig~g~~~~~~~~~~~~G~~g~~~~~~li~~i~~~~~~~~~aEl~s~~P~~GG~y~~~~~~~g~ 106 (190)
.|+++++-...-..+...+++.+..........|-. ..+..+...+..+..+..+.+.-.+.+ .-..+.|.++-||+
T Consensus 2 gr~~~~~~~~~s~~at~~s~~t~ig~~~~~y~~G~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~T~~e~l~~Ryg~ 78 (407)
T TIGR00813 2 GRSLGGWVVAASLFASYISASQFLGLPGAIYAYGFA--IGFYELGALVLLIILGWLFVPIFINNG-AYTMPEYLEKRFGK 78 (407)
T ss_pred CCCCCcHHHHHHHHHHHhhHHHHhcCcHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHcC-CCchhHHHHHHhCc
Confidence 477888877776666666555554433333343421 122222222333445556666544433 34588888999998
Q ss_pred -hhHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhCCCCCCcHHHHHHHHHHHHHHHHhhhhhhcCCCCchhHHHHHHH
Q psy9206 107 -LPAFLRLWVALLIMRPTTQAIVALTFAQYAIKPFFPDSELPDRAVLLLAAACLCKNGNAIKPFFPDSELPDRAVLLLA 184 (190)
Q Consensus 107 -~~~~~~gw~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (190)
....+.+....+ ......+......+..+.. +. + .+.+...++..+++++-+ .. .-......++.+|.++.
T Consensus 79 ~~~~~~~~~~~i~-~~~~~~~~q~~g~~~il~~-~~-g--i~~~~~~ii~~~i~~~Yt-~~-GG~~av~~Td~iQ~~i~ 150 (407)
T TIGR00813 79 RILRGLSVLSLIL-YIFLYMSVDLFSGALLIEL-IT-G--LDLYLSLLLLGAITILYT-VF-GGLKAVVWTDTIQAVIM 150 (407)
T ss_pred hHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH-Hh-C--chHHHHHHHHHHHHHHHH-HH-cchHHHHHHHHHHHHHH
Confidence 455666655544 3445666667777777765 32 2 233444444333333333 12 22223356777776553
No 63
>PRK00701 manganese transport protein MntH; Reviewed
Probab=87.25 E-value=19 Score=31.27 Aligned_cols=44 Identities=14% Similarity=0.027 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcccC-c-chHhhHHHHhCchhHHHH
Q psy9206 69 WTVCGLLSTIGALCYAELGTCISRS-G-GDYAYILVAFGELPAFLR 112 (190)
Q Consensus 69 ~li~~i~~~~~~~~~aEl~s~~P~~-G-G~y~~~~~~~g~~~~~~~ 112 (190)
++..-++..+..+.+-|++.+.-.. | +...-.++.++|+.++..
T Consensus 67 LLW~llls~~~~~~~Q~~~~RlgivTG~~l~~~ir~~~~~~~~~~~ 112 (439)
T PRK00701 67 LLWVILLSNLMAMLLQSLSAKLGIATGRDLAQACRDRYPRPVVWFL 112 (439)
T ss_pred HHHHHHHHHHHHHHHHHHHhHhhhhcCCCHHHHHHHHCCchHHHHH
Confidence 3445555666777888888877642 3 566677888998887765
No 64
>PF02133 Transp_cyt_pur: Permease for cytosine/purines, uracil, thiamine, allantoin; InterPro: IPR001248 The Nucleobase Cation Symporter-1 (NCS1) family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.; GO: 0015205 nucleobase transmembrane transporter activity, 0015851 nucleobase transport, 0016020 membrane; PDB: 2JLN_A 2JLO_A.
Probab=84.63 E-value=12 Score=32.17 Aligned_cols=109 Identities=18% Similarity=0.058 Sum_probs=49.7
Q ss_pred ccccccchhHHHHHHhhhhhcchhccchHHHHHhcc-cchHHHHHHHHHHHHHHHHHHHHHHhhhhcccCcc-hHhhHHH
Q psy9206 25 QMKRKITLLGGVSIIVGCIIGSGIFVSPAGVLAETQ-SVGLSIVIWTVCGLLSTIGALCYAELGTCISRSGG-DYAYILV 102 (190)
Q Consensus 25 ~l~r~l~~~~~~~~~~~~~ig~g~~~~~~~~~~~~G-~~g~~~~~~li~~i~~~~~~~~~aEl~s~~P~~GG-~y~~~~~ 102 (190)
+-+|+-++++.+.+=++..+....+..-.. ....| +..-++++.+++.++........+.++ |+.|= +...++.
T Consensus 4 ~~~R~~~~~~~~~iW~~~~~~~~~~~~G~~-~~~~gL~~~~ailai~~G~~l~~i~~~~~~~~G---~r~Gl~~~v~sR~ 79 (440)
T PF02133_consen 4 ESERTWSPWSLFWIWFGANISIATFVTGAL-GVALGLSFWQAILAILIGNLLGAILVALMGIIG---PRTGLPTMVLSRA 79 (440)
T ss_dssp -GG--B-HHHHHHHHCHHH-SCHHH-HHHH-HHCCCS-HHHHHHHHHHHHHHHHHHHHHHTHHH---HCC---HHHHTTT
T ss_pred hhcCCCcHHHHHHHHHHHHHHHHHHHHHHH-HHccCchHHHHHHHHHHHHHHHHHHHHHhcccc---cccCCCchhcchh
Confidence 456778888888876655543333322111 22223 111233344444444433333344444 44443 4445566
Q ss_pred HhCchhHHHHHHHHHHHHHhHHHHHHHHHHHHHhhh
Q psy9206 103 AFGELPAFLRLWVALLIMRPTTQAIVALTFAQYAIK 138 (190)
Q Consensus 103 ~~g~~~~~~~gw~~~~~~~~~~~a~~~~~~~~~~~~ 138 (190)
.||.+-+.+......+ ..+...+......++.+..
T Consensus 80 ~FG~~Gs~l~~~l~~i-~~igW~av~~~~~g~al~~ 114 (440)
T PF02133_consen 80 SFGYRGSKLPSLLRAI-SAIGWFAVNTWLGGQALAA 114 (440)
T ss_dssp TS-TTTTHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
T ss_pred ccCcchHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 7888877777766554 2223445555555555554
No 65
>PF01490 Aa_trans: Transmembrane amino acid transporter protein; InterPro: IPR013057 This transmembrane region is found in many amino acid transporters including P34579 from SWISSPROT (UNC-47) and P40501 from SWISSPROT (MTR). UNC-47 encodes a vesicular amino butyric acid (GABA) transporter, (VGAT) and is is predicted to have 10 transmembrane domains UNC47_CAEEL []. MTR is an N system amino acid transporter system protein involved in methyltryptophan resistance MTR_NEUCR. Other members of this family include proline transporters and amino acid transporters whose specificity has not yet been identified.
Probab=83.68 E-value=1.2 Score=37.46 Aligned_cols=89 Identities=21% Similarity=0.326 Sum_probs=65.0
Q ss_pred cccchhHHHHHHhhhhhcchhccchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhhcccCcchHhh---HHHHh
Q psy9206 28 RKITLLGGVSIIVGCIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTIGALCYAELGTCISRSGGDYAY---ILVAF 104 (190)
Q Consensus 28 r~l~~~~~~~~~~~~~ig~g~~~~~~~~~~~~G~~g~~~~~~li~~i~~~~~~~~~aEl~s~~P~~GG~y~~---~~~~~ 104 (190)
||-+.++.....++.++|+|.+..|.. ..+.|-. ..++..++.++........+.|.....|+..+...| .++.+
T Consensus 1 ~~~s~~~~~~~l~~~~iG~G~L~lP~a-f~~~G~~-~g~i~l~~~~~~s~~t~~~l~~~~~~~~~~~~~~~y~~l~~~~~ 78 (409)
T PF01490_consen 1 HKGSWFSAFFNLINSIIGAGILSLPYA-FAQSGWV-LGIILLVLVALLSYYTMYLLVRAANAMPNGTGRRSYGDLARRAF 78 (409)
T ss_pred CCccHHHHHHHHHHHHHhHHHHHHHHH-HHHhhhh-hhhHHHHHHHHHHHHhhhhhhccccccccccccccccccccccc
Confidence 467889999999999999999998766 4455532 245556777777888888899998877633334444 36779
Q ss_pred CchhHHHHHHHHHH
Q psy9206 105 GELPAFLRLWVALL 118 (190)
Q Consensus 105 g~~~~~~~gw~~~~ 118 (190)
||+..++......+
T Consensus 79 G~~~~~~~~~~~~~ 92 (409)
T PF01490_consen 79 GPKGKWFVDICIFI 92 (409)
T ss_pred cccccccccchhee
Confidence 99888887766554
No 66
>COG3949 Uncharacterized membrane protein [Function unknown]
Probab=82.40 E-value=28 Score=29.15 Aligned_cols=118 Identities=17% Similarity=0.124 Sum_probs=74.9
Q ss_pred HHHHhhhhhcchhccchHHHHHhcccch-HHHHHHHHHHHHHHHHHHHHHHhhhhcccCcchHhhHHHHhCchhHHHHHH
Q psy9206 36 VSIIVGCIIGSGIFVSPAGVLAETQSVG-LSIVIWTVCGLLSTIGALCYAELGTCISRSGGDYAYILVAFGELPAFLRLW 114 (190)
Q Consensus 36 ~~~~~~~~ig~g~~~~~~~~~~~~G~~g-~~~~~~li~~i~~~~~~~~~aEl~s~~P~~GG~y~~~~~~~g~~~~~~~gw 114 (190)
....++.++|+| |.+-.+..+..|+-| .+.++-++++++....+....|++.++.. ...-.+.++..||+.+-+---
T Consensus 9 ~f~~ig~~vGAG-fAsGqEi~QFF~~~G~~s~~gIivs~vlf~~~g~vim~ig~~f~a-~~y~~~~~~v~~~~~~ki~d~ 86 (349)
T COG3949 9 AFAFIGTVVGAG-FASGQEIMQFFGKYGVYSILGIILSTVLFTLSGAVIMTIGKKFNA-TSYREILKYVSGPKFAKIIDI 86 (349)
T ss_pred HHHHHHHhhccc-ccchHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcc-cchHHHHHHHhhHHHHHHHHH
Confidence 344667788877 555577777776543 24556899999999999999999998864 446678888899888876543
Q ss_pred HHHHHHHhHHHHHHHHHHHH-HhhhhhCCCCCCcHHHHHHHHHHHHHH
Q psy9206 115 VALLIMRPTTQAIVALTFAQ-YAIKPFFPDSELPDRAVLLLAAACLCK 161 (190)
Q Consensus 115 ~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~ 161 (190)
...+ .....++...+.+. .+.+. ++.|.|...++.+.+..+
T Consensus 87 ~iif--~lf~~~vVM~AGags~~~e~----~~lP~wiGali~i~~v~i 128 (349)
T COG3949 87 IIIF--FLFSTAVVMLAGAGSLLEEM----FGLPYWIGALIIILLVLI 128 (349)
T ss_pred HHHH--HHHHHHHHHhccchhHHHHH----hCccHHHHHHHHHHHHHH
Confidence 3332 22444444433333 44432 345666664544444333
No 67
>PRK11017 codB cytosine permease; Provisional
Probab=80.17 E-value=36 Score=29.01 Aligned_cols=89 Identities=19% Similarity=0.125 Sum_probs=42.8
Q ss_pred ccccccchhHHHHHHhhhhhcchhccchHHHHHhcc-cchHHHHHHHHHHHHHHHHHHHHHHhhhhcccCcchHhhHHHH
Q psy9206 25 QMKRKITLLGGVSIIVGCIIGSGIFVSPAGVLAETQ-SVGLSIVIWTVCGLLSTIGALCYAELGTCISRSGGDYAYILVA 103 (190)
Q Consensus 25 ~l~r~l~~~~~~~~~~~~~ig~g~~~~~~~~~~~~G-~~g~~~~~~li~~i~~~~~~~~~aEl~s~~P~~GG~y~~~~~~ 103 (190)
+.+|+ +.++....-++..+....+...+. + ..| +..-++++.+++.++........+-.+.++-. .+....+..
T Consensus 6 ~~~r~-~~~~~~~~~~g~~~~~~~~~~g~~-l-~~GLs~~~ai~aiilG~~i~~~~~~l~~~~G~k~G~--~~~v~sR~~ 80 (404)
T PRK11017 6 QSARK-GVLSLTMVMLGFTFFSASMWAGGT-L-GTGLSFVDFLLAVLIGNLLLGIYTAALGYIGAKTGL--STHLLARFS 80 (404)
T ss_pred HHHhc-chHhHHHHHHHHHHHHHHHHHHHH-H-hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc--CHHHHHHHH
Confidence 34455 778876554444432222222122 2 122 22223434444444444444444444443322 255566777
Q ss_pred hCchhHHHHHHHHHH
Q psy9206 104 FGELPAFLRLWVALL 118 (190)
Q Consensus 104 ~g~~~~~~~gw~~~~ 118 (190)
||.+-+.+.....++
T Consensus 81 FG~~Gs~l~~~~~~i 95 (404)
T PRK11017 81 FGEKGSWLPSLLLGF 95 (404)
T ss_pred hchhHHHHHHHHHHH
Confidence 998888877655554
No 68
>PF00474 SSF: Sodium:solute symporter family; InterPro: IPR001734 Sodium/substrate symport (or co-transport) is a widespread mechanism of solute transport across cytoplasmic membranes of pro- and eukaryotic cells. Thereby the energy stored in an inwardly directed electrochemical sodium gradient (sodium motive force, SMF) is used to drive solute accumulation against a concentration gradient. The SMF is generated by primary sodium pumps (e.g. sodium/potassium ATPases, sodium translocating respiratory chain complexes) or via the action of sodium/proton antiporters. Sodium/substrate transporters are grouped in different families based on sequence similarities [, ]. One of these families, known as the sodium:solute symporter family (SSSF), contains over a hundred members of pro- and eukaryotic origin []. The average hydropathy plot for SSSF proteins predicts 11 to 15 putative transmembrane domains (TMs) in alpha-helical conformation. A secondary structure model of PutP from Escherichia coli suggests the protein contains 13 TMs with the N terminus located on the periplasmic side of the membrane and the C terminus facing the cytoplasm. The results support the idea of a common topological motif for members of the SSSF. Transporters with a C-terminal extension are proposed to have an additional 14th TM. An ordered binding model of sodium/substrate transport suggests that sodium binds to the empty transporter first, thereby inducing a conformational alteration which increases the affinity of the transporter for the solute. The formation of the ternary complex induces another structural change that exposes sodium and substrate to the other site of the membrane. Substrate and sodium are released and the empty transporter re-orientates in the membrane allowing the cycle to start again.; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3DH4_D 2XQ2_A.
Probab=79.79 E-value=36 Score=28.74 Aligned_cols=148 Identities=11% Similarity=-0.001 Sum_probs=64.6
Q ss_pred ccccchhHHHHHHhhhhhcchhccchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhhcccCcchHhhHHHHhCc
Q psy9206 27 KRKITLLGGVSIIVGCIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTIGALCYAELGTCISRSGGDYAYILVAFGE 106 (190)
Q Consensus 27 ~r~l~~~~~~~~~~~~~ig~g~~~~~~~~~~~~G~~g~~~~~~li~~i~~~~~~~~~aEl~s~~P~~GG~y~~~~~~~g~ 106 (190)
.|+++++-+..--++..++++-+..........|-.+ .+..+-..+......+.++.--.+. +.-...+|.++-||+
T Consensus 5 gr~~~~~~~~~s~~at~~s~~t~~G~~g~~y~~G~~~--~~~~~~~~~~~~~~~~~~~~~~r~~-~~~T~~e~~~~Ryg~ 81 (406)
T PF00474_consen 5 GRSLGWWVVAFSLVATWISAWTFIGFPGFAYSYGISG--LWYAIGYAIGFLLFALFFAPRLRRS-GAVTIPEYLEKRYGS 81 (406)
T ss_dssp -S---HHHHHHHHHHHHSSHHHHTHHHHHHHHT-GGG--GHHHHHHHHHHHHHHHHTHHHHHHT-T--SHHHHHHHHT-H
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcce--eeeccccchhHHHHHHHHHHhhccc-chhhhhhhhhhhcCC
Confidence 4778888666666666665555544333333444322 1111222222222333333333222 334488899999998
Q ss_pred hh--HHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhCCCCCCcHHHHHHHHHHHHHHHHhhhhhhcCCCCchhHHHHHHH
Q psy9206 107 LP--AFLRLWVALLIMRPTTQAIVALTFAQYAIKPFFPDSELPDRAVLLLAAACLCKNGNAIKPFFPDSELPDRAVLLLA 184 (190)
Q Consensus 107 ~~--~~~~gw~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (190)
.. ..+......+ ......+......+..++. .+ +. +.....++..++.++-+ .-.-......++..|.++.
T Consensus 82 ~~~~~~~~~i~~i~-~~~~~~~~q~~~~~~~~~~-~~-gi--~~~~~~~i~~~i~~iYt--~~GGl~av~~td~iQ~~i~ 154 (406)
T PF00474_consen 82 KALLRILAAIIIIV-FMIPYLAAQLVGGGALLSV-LF-GI--PYNTAILIVGVIVIIYT--FFGGLRAVAWTDFIQGVIM 154 (406)
T ss_dssp HH-HHHHHHHHHHH-HHHTHHHHHHHHHHHHHHH-HT-T----HHHHHHHHHHHHHHTT--CTT------SHHHHHHHHH
T ss_pred chhhhhhcccccch-hhhhhhhccccccccchhh-cc-ch--hhhHHHHHHHHHHHHhh--hhhhHhhhhHHHHHHHHHH
Confidence 88 5554433333 3445566666777777765 33 22 22233333332333322 1122223346777777654
No 69
>COG0591 PutP Na+/proline symporter [Amino acid transport and metabolism / General function prediction only]
Probab=70.80 E-value=74 Score=28.01 Aligned_cols=106 Identities=11% Similarity=0.002 Sum_probs=64.7
Q ss_pred ccccchhHHHHHHhhhh-hc-chhccchHHHHHhcccchHHHHH--H-HHHHHHHHHHHHHHHHhhhhcccCcchHhhHH
Q psy9206 27 KRKITLLGGVSIIVGCI-IG-SGIFVSPAGVLAETQSVGLSIVI--W-TVCGLLSTIGALCYAELGTCISRSGGDYAYIL 101 (190)
Q Consensus 27 ~r~l~~~~~~~~~~~~~-ig-~g~~~~~~~~~~~~G~~g~~~~~--~-li~~i~~~~~~~~~aEl~s~~P~~GG~y~~~~ 101 (190)
.|+++.+ +.+++.+.. .+ +.....++..... |..+ ..+. . +...+...+.+--+.+++ +.+..-..+.|.+
T Consensus 37 gR~lg~~-v~~ls~~as~~s~~t~lG~~g~ay~~-G~~~-~~~~~~~~~~~~~~~~~~~~rl~~~~-~~~~~~T~~d~l~ 112 (493)
T COG0591 37 GRSLGPF-VYALSAAASDTSGWTFLGLPGLAYAS-GLSG-LWIAIGLLIGAFLLWLLFAPRLRRLA-KARGATTIPDFLE 112 (493)
T ss_pred CCcCChH-HHHHHHHHHHHHHHHHhcchHHHHhc-ChHH-HHHHHHHHHHHHHHHHHHHHHHHHHh-cccCCccHHHHHH
Confidence 5889998 666655554 33 3444445554433 4322 1111 1 233333444566677887 6666667999999
Q ss_pred HHhC-chhHHHHHHHHHHHHHhHHHHHHHHHHHHHhh
Q psy9206 102 VAFG-ELPAFLRLWVALLIMRPTTQAIVALTFAQYAI 137 (190)
Q Consensus 102 ~~~g-~~~~~~~gw~~~~~~~~~~~a~~~~~~~~~~~ 137 (190)
+-|| +....+.+-...+ .....++....+.+..++
T Consensus 113 ~Rf~s~~lr~l~ali~iv-~~i~yia~ql~~~~~~~~ 148 (493)
T COG0591 113 ARFGSKILRILSALIIIV-FFIPYIALQLVAGGLLLS 148 (493)
T ss_pred HHcCChHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhh
Confidence 9999 7777777755555 455666666666776664
No 70
>TIGR03648 Na_symport_lg probable sodium:solute symporter, VC_2705 subfamily. This family belongs to a larger family of transporters of the sodium:solute symporter superfamily, TC 2.A.21. Members of this strictly bacterial protein subfamily are found almost invariably immediately downstream from a member of family TIGR03647. Occasionally, the two genes are fused.
Probab=67.21 E-value=93 Score=27.75 Aligned_cols=107 Identities=16% Similarity=0.064 Sum_probs=55.0
Q ss_pred ccccchhHHHHHHhhhhhcchhccchHHHHHhcccchH-HHHHHHHHHHHHHHHHHHHHHhhhhcccCcchHhhHHHHhC
Q psy9206 27 KRKITLLGGVSIIVGCIIGSGIFVSPAGVLAETQSVGL-SIVIWTVCGLLSTIGALCYAELGTCISRSGGDYAYILVAFG 105 (190)
Q Consensus 27 ~r~l~~~~~~~~~~~~~ig~g~~~~~~~~~~~~G~~g~-~~~~~li~~i~~~~~~~~~aEl~s~~P~~GG~y~~~~~~~g 105 (190)
.|+++++.+..-..++.+++..+..........|-.+. ..+.|.++ ....++.+++.-.++.. -..+.|.++-|+
T Consensus 31 Gr~l~~~~~~~s~~At~~Sa~tflG~~g~~y~~G~~~~~~~~g~~~~---~~~~~~~~~p~~rr~~~-~T~~e~l~~Rf~ 106 (552)
T TIGR03648 31 GRGVPPVANGMATAADWMSAASFISMAGLIAFLGYDGLAYLMGWTGG---YVLLALLLAPYLRKFGK-YTVPDFIGDRYY 106 (552)
T ss_pred CCCCchHHHHHHHHHHHHhHHHHHHHHHHHHHhChHHHHHHHHHHHH---HHHHHHHHHHHHHHCCC-ccHHHHHHHHhC
Confidence 58899987666666655554444432222333343221 11123222 22344555666555543 358888888888
Q ss_pred c-hhHHHHHHHHHHHHHhHHHHHHHHHHHHHhhh
Q psy9206 106 E-LPAFLRLWVALLIMRPTTQAIVALTFAQYAIK 138 (190)
Q Consensus 106 ~-~~~~~~gw~~~~~~~~~~~a~~~~~~~~~~~~ 138 (190)
+ ....+.+....+ ......+......+..++.
T Consensus 107 s~~~~~~~~i~~~~-~~~~~l~~ql~~~~~~l~~ 139 (552)
T TIGR03648 107 SNTARLVAVICAIF-ISFTYVAGQMRGVGVVFSR 139 (552)
T ss_pred CCceehhHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 4 456666655443 2223344444455555554
No 71
>PF01566 Nramp: Natural resistance-associated macrophage protein; InterPro: IPR001046 The natural resistance-associated macrophage protein (NRAMP) family consists of Nramp1, Nramp2, and yeast proteins Smf1 and Smf2. The NRAMP family is a novel family of functionally related proteins defined by a conserved hydrophobic core of ten transmembrane domains []. Nramp1 is an integral membrane protein expressed exclusively in cells of the immune system and is recruited to the membrane of a phagosome upon phagocytosis. Nramp2 is a multiple divalent cation transporter for Fe2+, Mn2+ and Zn2+ amongst others. It is expressed at high levels in the intestine; and is major transferrin-independent iron uptake system in mammals []. The yeast proteins Smf1 and Smf2 may also transport divalent cations []. The natural resistance of mice to infection with intracellular parasites is controlled by the Bcg locus, which modulates the cytostatic/cytocidal activity of phagocytes. Nramp1, the gene responsible, is expressed exclusively in macrophages and poly-morphonuclear leukocytes, and encodes a polypeptide (natural resistance-associated macrophage protein) with features typical of integral membrane proteins. Other transporter proteins from a variety of sources also belong to this family.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane
Probab=61.27 E-value=96 Score=25.84 Aligned_cols=67 Identities=21% Similarity=0.102 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHHhhhhccc--CcchHhhHHHHhCchhHHHHHHHHHHHHHhHHHHHHHHHHHHHhh
Q psy9206 70 TVCGLLSTIGALCYAELGTCISR--SGGDYAYILVAFGELPAFLRLWVALLIMRPTTQAIVALTFAQYAI 137 (190)
Q Consensus 70 li~~i~~~~~~~~~aEl~s~~P~--~GG~y~~~~~~~g~~~~~~~gw~~~~~~~~~~~a~~~~~~~~~~~ 137 (190)
+..-++..+..+.+-|++.++-. .-+...-.++.+||++++...-...+ ........+....+.-+.
T Consensus 16 lw~lll~~~~~~~~q~~~~R~~~~Tg~~l~~~~~~~~g~~~~~~~~~~~~l-~~~~~~~~~~~g~a~al~ 84 (358)
T PF01566_consen 16 LWVLLLSNLLKYVFQEMAARLGIVTGKGLAEGIRERFGRGWAWFLWILIFL-ANIATQAAEIIGIAIALN 84 (358)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcCCChhhhhhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 33444566677778888887763 33455555677787777766533333 232333444444444444
No 72
>PRK09442 panF sodium/panthothenate symporter; Provisional
Probab=56.72 E-value=1.4e+02 Score=26.12 Aligned_cols=109 Identities=10% Similarity=-0.030 Sum_probs=53.2
Q ss_pred ccccchhHHHHHHhhhhhcchhccchHHHHHhcccchHHHHHH---HHHHHHHHHHHHHHHHhhhhcccCcchHhhHHHH
Q psy9206 27 KRKITLLGGVSIIVGCIIGSGIFVSPAGVLAETQSVGLSIVIW---TVCGLLSTIGALCYAELGTCISRSGGDYAYILVA 103 (190)
Q Consensus 27 ~r~l~~~~~~~~~~~~~ig~g~~~~~~~~~~~~G~~g~~~~~~---li~~i~~~~~~~~~aEl~s~~P~~GG~y~~~~~~ 103 (190)
.|+++++-...-..+..+++.-+..........|-.. ..... ....+.....+.-+.++..+. +.-....|.++.
T Consensus 40 gr~~~~~~~~~s~~at~~s~~t~ig~~g~~y~~G~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~r~~-~~~T~~e~l~~R 117 (483)
T PRK09442 40 NRSMGGFVLAMTLIATYISASSFIGGPGAAYKYGLGW-VLLAMIQVPTVWLSLGILGKKFAILARKY-NAVTLNDMLRAR 117 (483)
T ss_pred CCCccHHHHHHHHHHHHhhHhHHhCChhHHHHhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCccHHHHHHHH
Confidence 5788887666655565555444443222233333211 11110 111111112333445555544 334478888888
Q ss_pred hCch-hHHHHHHHHHHHHHhHHHHHHHHHHHHHhhh
Q psy9206 104 FGEL-PAFLRLWVALLIMRPTTQAIVALTFAQYAIK 138 (190)
Q Consensus 104 ~g~~-~~~~~gw~~~~~~~~~~~a~~~~~~~~~~~~ 138 (190)
||++ ..+.......+ ......+......+..++.
T Consensus 118 yg~~~~~~~~~i~~~~-~~~~~~~~ql~~~g~~l~~ 152 (483)
T PRK09442 118 YQSRLLVWLASLSLLV-FFFAAMTAQFIGGARLLET 152 (483)
T ss_pred hCChHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 8865 45555544443 3334455556666666665
No 73
>PF03806 ABG_transport: AbgT putative transporter family; InterPro: IPR004697 The p-aminobenzoyl-glutamate transporter family includes two putative transporters, the AbgT protein of Escherichia coli and MtrF of Neisseria gonorrhoeae. AbgT expression is apparently cryptic in wild type cells, but when present on a high copy number plasmid, or when expressed at higher levels due to mutation, it allows utilization of p-aminobenzoyl-glutamate as a source of p-aminobenzoate for p-aminobenzoate auxotrophs []. p-Aminobenzoate is a constituent of, and a precursor for, the biosynthesis of folic acid. It is not currently known if AbgT is naturally involved in transporting p-aminobenzoyl-glutamate, or if it only becomes involved when under altered regulation. MtrF is an inner membrane protein which, together with the MtrCDE efflux pump, is required for high-level resistance to hydrophobic antimicrobial agents in N. gonorrhoeae []. Its role in this process is not known, but it has been suggested that it may be a component of the efflux pump which is dispensible for basal activity, but required for high-level activity [].
Probab=55.49 E-value=1.4e+02 Score=26.58 Aligned_cols=70 Identities=11% Similarity=0.083 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcccCcchHhhHHHHhCchhHHHHHHHHHH-----HHHhHHHHHHHHHHHHHhhh
Q psy9206 69 WTVCGLLSTIGALCYAELGTCISRSGGDYAYILVAFGELPAFLRLWVALL-----IMRPTTQAIVALTFAQYAIK 138 (190)
Q Consensus 69 ~li~~i~~~~~~~~~aEl~s~~P~~GG~y~~~~~~~g~~~~~~~gw~~~~-----~~~~~~~a~~~~~~~~~~~~ 138 (190)
..+..+..+....+|.-.+.++.+..-....-.+......+|+.-..... +.|.=.....+...++.+++
T Consensus 300 IpiI~l~F~i~GivYG~~sG~iks~~Dv~~~M~~~m~~m~~yiVL~F~aaQFia~F~~Snlg~i~Av~GA~~L~~ 374 (502)
T PF03806_consen 300 IPIIFLFFLIPGIVYGIASGTIKSDKDVVKMMSKGMKSMAPYIVLAFFAAQFIAYFNWSNLGTILAVKGAEFLKS 374 (502)
T ss_pred HHHHHHHHHHHHHHHhhhhceecCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHh
Confidence 34445556667888999999998887788777777776666654322111 13322333445556666665
No 74
>TIGR02119 panF sodium/pantothenate symporter. Pantothenate (vitamin B5) is a precursor of coenzyme A and is made from aspartate and 2-oxoisovalerate in most bacteria with completed genome sequences. However, some pathogens must import pantothenate. This model describes PanF, a sodium/pantothenate symporter, from a larger family of Sodium/substrate symporters (pfam00474). Several species that have this transporter appear to lack all enzymes of pantothenate biosynthesis, namely Haemophilus influenzae, Pasteurella multocida, Fusobacterium nucleatum, and Borrelia burgdorferi.
Probab=54.67 E-value=1.4e+02 Score=25.81 Aligned_cols=109 Identities=7% Similarity=-0.050 Sum_probs=53.1
Q ss_pred ccccchhHHHHHHhhhhhcchhccchHHHHHhcccchHHHHHHH---HHHHHHHHHHHHHHHhhhhcccCcchHhhHHHH
Q psy9206 27 KRKITLLGGVSIIVGCIIGSGIFVSPAGVLAETQSVGLSIVIWT---VCGLLSTIGALCYAELGTCISRSGGDYAYILVA 103 (190)
Q Consensus 27 ~r~l~~~~~~~~~~~~~ig~g~~~~~~~~~~~~G~~g~~~~~~l---i~~i~~~~~~~~~aEl~s~~P~~GG~y~~~~~~ 103 (190)
.|+++++....-.+++.++.+.+..........|-. +..+.+. .+.+.....+.-+.+...+. +.-..+.|.++-
T Consensus 39 gr~l~~~~~~~s~~at~~s~~t~~g~~g~~y~~G~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~T~~e~l~~R 116 (471)
T TIGR02119 39 GRSMGGFVLAMTLVATYGSASSFIGGPGIAYNYGLG-WVLLAMIQVPTGYFVLGVLGKKFAIISRKY-NAITINDVLKAR 116 (471)
T ss_pred CCcccHHHHHHHHHHHHhhHHHHcCcHHHHHHhhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCccHHHHHHHH
Confidence 578999887777777776665554433333333321 1111111 11111111233344444433 334588888998
Q ss_pred hCch-hHHHHHHHHHHHHHhHHHHHHHHHHHHHhhh
Q psy9206 104 FGEL-PAFLRLWVALLIMRPTTQAIVALTFAQYAIK 138 (190)
Q Consensus 104 ~g~~-~~~~~gw~~~~~~~~~~~a~~~~~~~~~~~~ 138 (190)
||++ ...+.+-...+ .............+..++.
T Consensus 117 yg~~~~~~~~~i~~i~-~~~~~~~~ql~g~g~~l~~ 151 (471)
T TIGR02119 117 YNNKFLVWLSSISLLV-FFFSAMVAQFIGGARLIES 151 (471)
T ss_pred cCCCchHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 9954 45555433333 2223334445555555554
No 75
>KOG1305|consensus
Probab=48.62 E-value=1.1e+02 Score=26.33 Aligned_cols=65 Identities=18% Similarity=0.289 Sum_probs=47.9
Q ss_pred ccccchhHHHHHHhhhhhcchhccchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhhcccC
Q psy9206 27 KRKITLLGGVSIIVGCIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTIGALCYAELGTCISRS 93 (190)
Q Consensus 27 ~r~l~~~~~~~~~~~~~ig~g~~~~~~~~~~~~G~~g~~~~~~li~~i~~~~~~~~~aEl~s~~P~~ 93 (190)
+++-+.+..+.--.+++.|+|++..|.. ....| ..+.++.....++....-.+.+.+.+...|+.
T Consensus 3 ~~~~s~~~~v~nl~~ti~GaGIl~~P~a-fk~~G-iv~gi~li~~~a~~s~~sl~~l~~~a~~~~~~ 67 (411)
T KOG1305|consen 3 SGKTSFRSAVFNLVNTIMGAGILAMPYA-FKTAG-LLLGILLIVLSAFLSLLSLYLLSKCAKKSGER 67 (411)
T ss_pred CCccchhhhHHHHHhhhhccHHHHhHHH-HHHhc-HHHHHHHHHHHHHHHHhHHHHHHHhhhhcCCC
Confidence 4556777777778888899999988655 66666 33455556777777777788888888877766
No 76
>PRK12488 acetate permease; Provisional
Probab=48.32 E-value=2e+02 Score=25.67 Aligned_cols=107 Identities=10% Similarity=-0.002 Sum_probs=52.4
Q ss_pred ccccchhHHHHHHhhhhhcchhccchHHHHHhcccchHHHHHHHHHHHHH-HHHHHHHHHhhhhcccCcchHhhHHHHhC
Q psy9206 27 KRKITLLGGVSIIVGCIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLS-TIGALCYAELGTCISRSGGDYAYILVAFG 105 (190)
Q Consensus 27 ~r~l~~~~~~~~~~~~~ig~g~~~~~~~~~~~~G~~g~~~~~~li~~i~~-~~~~~~~aEl~s~~P~~GG~y~~~~~~~g 105 (190)
.|+++++.......+..+++..+..........|-.+ ++ +.++.... ....+.+++--.+... =-++.|.++-|+
T Consensus 66 GR~l~~~~~~~si~at~~Sa~sflG~~G~~y~~G~~~--~~-~~~g~~~g~~~~~~~~a~~lr~~g~-~T~~d~l~~Rf~ 141 (549)
T PRK12488 66 GGGLTGMQNGLAIAGDMISAASFLGISAMMFMNGYDG--LL-YALGVLAGWPIILFLIAERLRNLGK-YTFADVVSYRLA 141 (549)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhChhH--HH-HHHHHHHHHHHHHHHHHHHHHHCCC-cchHHHHHHHcC
Confidence 5889998887666666565555544333333344332 11 12222111 2223334433222221 236667777777
Q ss_pred -chhHHHHHHHHHHHHHhHHHHHHHHHHHHHhhh
Q psy9206 106 -ELPAFLRLWVALLIMRPTTQAIVALTFAQYAIK 138 (190)
Q Consensus 106 -~~~~~~~gw~~~~~~~~~~~a~~~~~~~~~~~~ 138 (190)
|....+.+....+ .............+..+..
T Consensus 142 s~~~r~laai~~i~-~~~~yl~~q~~g~g~il~~ 174 (549)
T PRK12488 142 QGPVRLTAAFGTLT-VVLMYLVAQMVGAGKLIEL 174 (549)
T ss_pred CCcchHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 5577777655444 2234444555555555554
No 77
>PF02554 CstA: Carbon starvation protein CstA; InterPro: IPR003706 Escherichia coli induces the synthesis of at least 30 proteins at the onset of carbon starvation, two-thirds of which are positively regulated by the cyclic AMP (cAMP) and cAMP receptor protein (CRP) complex. This family consists of carbon starvation protein CstA a predicted membrane protein. It has been suggested that CstA is involved in peptide utilization [].; GO: 0009267 cellular response to starvation, 0016020 membrane
Probab=45.63 E-value=1.9e+02 Score=24.67 Aligned_cols=86 Identities=17% Similarity=0.165 Sum_probs=49.4
Q ss_pred cchhHHHHHHhhhhhcchhccchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhhcccCcchHh-hHHHHhCchh
Q psy9206 30 ITLLGGVSIIVGCIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTIGALCYAELGTCISRSGGDYA-YILVAFGELP 108 (190)
Q Consensus 30 l~~~~~~~~~~~~~ig~g~~~~~~~~~~~~G~~g~~~~~~li~~i~~~~~~~~~aEl~s~~P~~GG~y~-~~~~~~g~~~ 108 (190)
.+.+-++..-+.++.|.|....|... ...|.. | -+.|++.+-+..--..=|.-+-....++|=... -+++..||+.
T Consensus 52 ~~~~vlfghhf~sIAGaGPI~GPi~a-a~~Gwl-P-a~lWI~~G~if~GaVHD~~sl~~SvR~~G~Si~~i~~~~lG~~~ 128 (376)
T PF02554_consen 52 TNKWVLFGHHFASIAGAGPIVGPILA-AQFGWL-P-ALLWIVFGCIFAGAVHDYGSLMASVRHKGKSIGEIAGKYLGKRA 128 (376)
T ss_pred CchHHhhHHHHHHHhccccchHHHHH-HHhcch-H-HHHHHHHccHHHHHHHHHHHHhhhhcCCCccHHHHHHHHHHHHH
Confidence 34456677888888888887776554 344422 1 223555554443333334444444445544444 4566788888
Q ss_pred HHHHHHHHHH
Q psy9206 109 AFLRLWVALL 118 (190)
Q Consensus 109 ~~~~gw~~~~ 118 (190)
+.+.....++
T Consensus 129 ~~lf~~f~~~ 138 (376)
T PF02554_consen 129 KKLFLIFIFF 138 (376)
T ss_pred HHHHHHHHHH
Confidence 8887766555
No 78
>PRK09395 actP acetate permease; Provisional
Probab=45.52 E-value=2.2e+02 Score=25.36 Aligned_cols=105 Identities=11% Similarity=0.019 Sum_probs=48.1
Q ss_pred ccccchhHHHHHHhhhhhcchhccchHHHHHhcccchHHHHHHHHHHHHH-HHHHHHHHHhhhhcccCc--chHhhHHHH
Q psy9206 27 KRKITLLGGVSIIVGCIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLS-TIGALCYAELGTCISRSG--GDYAYILVA 103 (190)
Q Consensus 27 ~r~l~~~~~~~~~~~~~ig~g~~~~~~~~~~~~G~~g~~~~~~li~~i~~-~~~~~~~aEl~s~~P~~G--G~y~~~~~~ 103 (190)
.|+++++....-..+..+++..+..........|-.+ .+ +.++..+. ....+.++ .++.+.| ..+.|.++-
T Consensus 68 gr~l~~~~~~~si~At~~Sa~tfiG~~g~~y~~G~~~--~~-~~~~~~~g~~~~~~~~~---~~~r~~g~~T~~d~l~~R 141 (551)
T PRK09395 68 GGGITGFQNGLAIAGDYMSAASFLGISALVFTSGYDG--LI-YSIGFLVGWPIILFLIA---ERLRNLGKYTFADVASYR 141 (551)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHhhHHHHHhCHHH--HH-HHHHHHHHHHHHHHHHH---HHHhhCCCccHHHHHHHH
Confidence 5889987655555555555444443222233334322 11 11222111 11222223 2332222 245566677
Q ss_pred hC-chhHHHHHHHHHHHHHhHHHHHHHHHHHHHhhh
Q psy9206 104 FG-ELPAFLRLWVALLIMRPTTQAIVALTFAQYAIK 138 (190)
Q Consensus 104 ~g-~~~~~~~gw~~~~~~~~~~~a~~~~~~~~~~~~ 138 (190)
|| |....+.+....+ .............+..++.
T Consensus 142 ygs~~~r~l~av~~iv-~~~~yl~~q~~g~g~il~~ 176 (551)
T PRK09395 142 LKQGPIRTLSACGSLV-VVALYLIAQMVGAGKLIQL 176 (551)
T ss_pred cCCchHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 87 4577776655444 2223344445555555554
No 79
>PF10856 DUF2678: Protein of unknown function (DUF2678); InterPro: IPR022564 This family of proteins has no known function.
Probab=45.42 E-value=41 Score=23.60 Aligned_cols=56 Identities=11% Similarity=0.217 Sum_probs=29.3
Q ss_pred HHHHhhhhhCCCCCCcHHH-HHHHHHHHHHHHHhhhhhhcCCCCchhHHHHHHHHHh
Q psy9206 132 FAQYAIKPFFPDSELPDRA-VLLLAAACLCKNGNAIKPFFPDSELPDRAVLLLAAAC 187 (190)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (190)
+.+.+.+.++|..+|.+.. ...+.++++.+....+..++++-....++..++...|
T Consensus 43 Lvtii~afvf~~~~p~p~~iffavcI~l~~~s~~lLI~WYR~gdl~Pkfr~li~~~~ 99 (118)
T PF10856_consen 43 LVTIISAFVFPQDPPKPLHIFFAVCILLICISAILLIFWYRQGDLDPKFRYLIYYNC 99 (118)
T ss_pred HHHHhheEEecCCCCCceEEehHHHHHHHHHHHHhheeehhcCCCChhHHHHHHHHH
Confidence 4455565455554443322 2333444444444456677777666666665554443
No 80
>PF12666 PrgI: PrgI family protein; InterPro: IPR024414 This family of bacterial proteins is functionally uncharacterised. Proteins in this family are typically between 116 and 146 amino acids in length. PrgI is found encoded on plasmids of Enterococcus faecalis, its function is not known.
Probab=39.68 E-value=91 Score=20.43 Aligned_cols=27 Identities=19% Similarity=0.442 Sum_probs=20.7
Q ss_pred cccccchhHHHHHHhhhhhcchhccch
Q psy9206 26 MKRKITLLGGVSIIVGCIIGSGIFVSP 52 (190)
Q Consensus 26 l~r~l~~~~~~~~~~~~~ig~g~~~~~ 52 (190)
.=-.++.+|.+.++.+..++.+.+...
T Consensus 13 i~~GlT~RQl~~l~~~~~~~~~~~~~~ 39 (93)
T PF12666_consen 13 IFFGLTLRQLICLAIGALVGVGVYLLL 39 (93)
T ss_pred hccCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 344579999999999998877766543
No 81
>PF13317 DUF4088: Protein of unknown function (DUF4088)
Probab=27.16 E-value=33 Score=26.33 Aligned_cols=23 Identities=26% Similarity=0.371 Sum_probs=15.9
Q ss_pred HHhhhhcccCcchHhhHHHHhCc
Q psy9206 84 AELGTCISRSGGDYAYILVAFGE 106 (190)
Q Consensus 84 aEl~s~~P~~GG~y~~~~~~~g~ 106 (190)
.|=+-.---+||+|.|+++.+.|
T Consensus 41 TE~AV~rll~~GqYaWAkr~~DK 63 (229)
T PF13317_consen 41 TERAVQRLLQGGQYAWAKRVFDK 63 (229)
T ss_pred hHHHHHHHHhcchhHHHHHHhhh
Confidence 34443334579999999998665
No 82
>PF11286 DUF3087: Protein of unknown function (DUF3087); InterPro: IPR021438 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=26.56 E-value=2.3e+02 Score=21.28 Aligned_cols=38 Identities=24% Similarity=0.210 Sum_probs=23.5
Q ss_pred HHhHHHHHHHHHHHHHhhhhhCCCCCCcHHHHHHHHHHH
Q psy9206 120 MRPTTQAIVALTFAQYAIKPFFPDSELPDRAVLLLAAAC 158 (190)
Q Consensus 120 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (190)
..++..+..++.+++.+.+ +|++......+.-+.++++
T Consensus 21 ~~v~~lai~sl~~s~llI~-lFg~~~~~nf~~NllGVil 58 (165)
T PF11286_consen 21 ACVASLAILSLAFSQLLIA-LFGGESGGNFHWNLLGVIL 58 (165)
T ss_pred HHHHHHHHHHHHHHHHHHH-HcCCCCCCceeeeHHHHHH
Confidence 3446777788889999997 5565444444444444433
No 83
>TIGR02121 Na_Pro_sym sodium/proline symporter. This family consists of the sodium/proline symporter (proline permease) from a number of Gram-negative and Gram-positive bacteria and from the archaeal genus Methanosarcina. Using the related pantothenate permease as an outgroup, candidate sequences from Bifidobacterium longum and several from archaea are found to be outside the clade defined by known proline permeases. These sequences, scoring between 570 and -40, define the range between trusted and noise cutoff scores.
Probab=21.74 E-value=5.4e+02 Score=22.43 Aligned_cols=43 Identities=5% Similarity=-0.059 Sum_probs=21.5
Q ss_pred chHhhHHHHhCch---hHHHHHHHHHHHHHhHHHHHHHHHHHHHhhh
Q psy9206 95 GDYAYILVAFGEL---PAFLRLWVALLIMRPTTQAIVALTFAQYAIK 138 (190)
Q Consensus 95 G~y~~~~~~~g~~---~~~~~gw~~~~~~~~~~~a~~~~~~~~~~~~ 138 (190)
..+.|.++-||+. ...+.+-...+ ......+......+..+..
T Consensus 105 T~~e~l~~Ryg~~~~~~~~~~ai~~~~-~~~~~~~~~l~~~~~~l~~ 150 (487)
T TIGR02121 105 TLPDFFENRFNDKSRLLRIISALIILV-FFTIYTSSGLVAGGKLFES 150 (487)
T ss_pred cHHHHHHHHhCCCCchhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 3788999999853 33333322222 1222344444555555554
No 84
>COG5478 Predicted small integral membrane protein [Function unknown]
Probab=20.21 E-value=2.4e+02 Score=20.51 Aligned_cols=21 Identities=33% Similarity=0.458 Sum_probs=16.4
Q ss_pred hhHHHHhCchhHHHHHHHHHH
Q psy9206 98 AYILVAFGELPAFLRLWVALL 118 (190)
Q Consensus 98 ~~~~~~~g~~~~~~~gw~~~~ 118 (190)
.++.+..|+.++|...|...+
T Consensus 11 ~~~A~~~g~p~~fvv~~~~i~ 31 (141)
T COG5478 11 NRVADFLGRPPAFVVALVAIL 31 (141)
T ss_pred HHHHHHhcCChHHHHHHHHHH
Confidence 456677888899988888776
Done!