Query psy9206
Match_columns 190
No_of_seqs 131 out of 1223
Neff 8.8
Searched_HMMs 29240
Date Fri Aug 16 21:37:44 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9206.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/9206hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3l1l_A Arginine/agmatine antip 99.8 3.7E-19 1.3E-23 150.3 14.5 153 24-185 4-156 (445)
2 3gia_A Uncharacterized protein 99.8 1.1E-17 3.8E-22 141.2 17.3 153 25-185 3-156 (444)
3 4djk_A Probable glutamate/gamm 99.7 6.5E-17 2.2E-21 138.8 14.4 152 21-183 4-159 (511)
4 2jln_A MHP1; hydantoin, transp 96.3 0.11 3.9E-06 44.2 13.8 91 24-118 21-112 (501)
5 3dh4_A Sodium/glucose cotransp 75.1 38 0.0013 28.8 16.2 150 27-185 19-168 (530)
6 2xq2_A Sodium/glucose cotransp 54.8 1E+02 0.0035 26.4 16.7 148 27-184 48-196 (593)
7 3u85_B Histone-lysine N-methyl 6.4 1.1E+02 0.0038 13.6 0.0 7 172-178 2-8 (21)
8 1xc0_A Pardaxin P-4, PA4; BEND 5.9 2.6E+02 0.0088 13.6 1.2 13 84-96 20-32 (33)
9 1rh5_C Secbeta; protein transl 5.7 4.2E+02 0.014 14.9 2.2 17 27-43 25-41 (53)
10 4dve_A Biotin transporter BIOY 4.2 6.7E+02 0.023 18.2 3.1 49 27-75 63-112 (198)
No 1
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=99.81 E-value=3.7e-19 Score=150.27 Aligned_cols=153 Identities=21% Similarity=0.257 Sum_probs=119.4
Q ss_pred cccccccchhHHHHHHhhhhhcchhccchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhhcccCcchHhhHHHH
Q psy9206 24 VQMKRKITLLGGVSIIVGCIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTIGALCYAELGTCISRSGGDYAYILVA 103 (190)
Q Consensus 24 ~~l~r~l~~~~~~~~~~~~~ig~g~~~~~~~~~~~~G~~g~~~~~~li~~i~~~~~~~~~aEl~s~~P~~GG~y~~~~~~ 103 (190)
+++||+++.++.+++.++.++|+|++..++. ....|+. .+++|+++++..++.+++++|+++++|++||.|+|+++.
T Consensus 4 ~~~~r~l~~~~~~~l~ig~~iG~Gif~~~~~-~~~~G~~--~~~~~li~~~~~~~~a~~~~el~~~~p~~Gg~y~~~~~~ 80 (445)
T 3l1l_A 4 DADAHKVGLIPVTLMVSGAIMGSGVFLLPAN-LASTGGI--AIYGWLVTIIGALGLSMVYAKMSFLDPSPGGSYAYARRC 80 (445)
T ss_dssp ---CCCBCHHHHHHHHHHHHCSSHHHHHHHH-HHHHCTH--HHHHHHHHHHHHHHHHHHHHHHHHHCCCTTTHHHHHHHH
T ss_pred CCCCCcccHHHHHHHHHHhHHhhhHHhhHHH-HHHhhhH--HHHHHHHHHHHHHHHHHHHHHHHccCCCCCCchhhHHhH
Confidence 4568999999999999999999999998877 4456754 678999999999999999999999999999999999999
Q ss_pred hCchhHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhCCCCCCcHHHHHHHHHHHHHHHHhhhhhhcCCCCchhHHHHHH
Q psy9206 104 FGELPAFLRLWVALLIMRPTTQAIVALTFAQYAIKPFFPDSELPDRAVLLLAAACLCKNGNAIKPFFPDSELPDRAVLLL 183 (190)
Q Consensus 104 ~g~~~~~~~gw~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 183 (190)
+||+.||+.+|.+++ .+....+.....+++++.. ++|..+ +++...++..+++++++ .+|... .+..++.+.++
T Consensus 81 ~G~~~g~~~g~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~-~in~~g--~~~~~~~~~~~ 154 (445)
T 3l1l_A 81 FGPFLGYQTNVLYWL-ACWIGNIAMVVIGVGYLSY-FFPILK-DPWVLTITCVVVLWIFV-LLNIVG--PKMITRVQAVA 154 (445)
T ss_dssp SCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHTTT-TCGGGG-SHHHHHHHHHHHHHHHH-HHHHHC--HHHHHHHHHHH
T ss_pred cCChHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH-HCcccc-ccHHHHHHHHHHHHHHH-HHHHhc--hHHHHHHHHHH
Confidence 999999999999998 4556777788888888875 555433 23555555555555555 566654 34456666555
Q ss_pred HH
Q psy9206 184 AA 185 (190)
Q Consensus 184 ~~ 185 (190)
+.
T Consensus 155 ~~ 156 (445)
T 3l1l_A 155 TV 156 (445)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 2
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C
Probab=99.77 E-value=1.1e-17 Score=141.25 Aligned_cols=153 Identities=20% Similarity=0.225 Sum_probs=121.1
Q ss_pred ccccccchhHHHHHHhhhhhcchhccchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhhcccCcchHhhHHHHh
Q psy9206 25 QMKRKITLLGGVSIIVGCIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTIGALCYAELGTCISRSGGDYAYILVAF 104 (190)
Q Consensus 25 ~l~r~l~~~~~~~~~~~~~ig~g~~~~~~~~~~~~G~~g~~~~~~li~~i~~~~~~~~~aEl~s~~P~~GG~y~~~~~~~ 104 (190)
+.||+++.++.++++++.++|+|++..++.....+|+. .+++|++++++.++.+++++|+++++|++||.|+|+++.+
T Consensus 3 ~~~r~l~~~~~~~l~~g~~iG~gi~~~~~~~~~~~G~~--~~~~~li~~~~~~~~~~~~~el~~~~P~~Gg~y~~~~~~~ 80 (444)
T 3gia_A 3 LKNKKLSLWEAVSMAVGVMIGASIFSIFGVGAKIAGRN--LPETFILSGIYALLVAYSYTKLGAKIVSNAGPIAFIHKAI 80 (444)
T ss_dssp CCCCCBCHHHHHHHHHHHHHHHHTTTSHHHHHHHHGGG--HHHHHHHHHHHHHHHHHHHHHHHTTCCCTTTHHHHHHHHH
T ss_pred ccCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcH--HHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcHHHhHHHHh
Confidence 46899999999999999999999999988888888873 7889999999999999999999999999999999999999
Q ss_pred Cch-hHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhCCCCCCcHHHHHHHHHHHHHHHHhhhhhhcCCCCchhHHHHHH
Q psy9206 105 GEL-PAFLRLWVALLIMRPTTQAIVALTFAQYAIKPFFPDSELPDRAVLLLAAACLCKNGNAIKPFFPDSELPDRAVLLL 183 (190)
Q Consensus 105 g~~-~~~~~gw~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 183 (190)
||+ .+...+|.+|+ .+....+.....+++++.. +++. .++.++..++..+++++++ .+|... .+..++.+.++
T Consensus 81 G~~~~~g~~~~~~~~-~~~~~~a~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~-~in~~g--~~~~~~~~~~~ 154 (444)
T 3gia_A 81 GDNIITGALSILLWM-SYVISIALFAKGFAGYFLP-LINA-PINTFNIAITEIGIVAFFT-ALNFFG--SKAVGRAEFFI 154 (444)
T ss_dssp CSSHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH-HTTC-CCCHHHHHHHHHHHHHHHH-HHHHHT--HHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH-HhCC-CCchHHHHHHHHHHHHHHH-HHHHHh--HHHHHHHHHHH
Confidence 996 34455799888 5667888899999999986 5454 3344555555555555555 566654 33446666554
Q ss_pred HH
Q psy9206 184 AA 185 (190)
Q Consensus 184 ~~ 185 (190)
+.
T Consensus 155 ~~ 156 (444)
T 3gia_A 155 VL 156 (444)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 3
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A
Probab=99.72 E-value=6.5e-17 Score=138.79 Aligned_cols=152 Identities=16% Similarity=0.145 Sum_probs=102.6
Q ss_pred ccccccccccchhHHHHHHhhhhhcchhccchHHHHHhcccchHHHHHHHHHHHHH-HHHHHHHHHhhh--hcccCcchH
Q psy9206 21 PIKVQMKRKITLLGGVSIIVGCIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLS-TIGALCYAELGT--CISRSGGDY 97 (190)
Q Consensus 21 ~~~~~l~r~l~~~~~~~~~~~~~ig~g~~~~~~~~~~~~G~~g~~~~~~li~~i~~-~~~~~~~aEl~s--~~P~~GG~y 97 (190)
++++++||++++++.++++++.++| ++..+. ....|+. .++.++++++.. ++.+++++|+++ ++| +||+|
T Consensus 4 ~~~~~~~r~l~~~~~~~l~~~~~ig--~~~~~~--~~~~G~~--~~~~~~i~~~~~~l~~al~~ael~s~~~~P-~GG~y 76 (511)
T 4djk_A 4 SVQTGKAKQLTLLGFFAITASMVMA--VYEYPT--FATSGFS--LVFFLLLGGILWFIPVGLCAAEMATVDGWE-EGGVF 76 (511)
T ss_dssp --------CCCHHHHHHHTGGGGCC--GGGHHH--HHTTTTH--HHHHHHHHHHHTHHHHHHHHHHHHTTSCC----CHH
T ss_pred cccCccCccccHHHHHHHHHHHHHh--hchhHH--HHhhHHH--HHHHHHHHHHHHHHHHHHHHHHHcccccCC-CCChh
Confidence 3456789999999999999999975 443332 3344432 344456666654 569999999999 999 99999
Q ss_pred hhHHHHhCchhHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhh-CCCCCCcHHHHHHHHHHHHHHHHhhhhhhcCCCCch
Q psy9206 98 AYILVAFGELPAFLRLWVALLIMRPTTQAIVALTFAQYAIKPF-FPDSELPDRAVLLLAAACLCKNGNAIKPFFPDSELP 176 (190)
Q Consensus 98 ~~~~~~~g~~~~~~~gw~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 176 (190)
+|+++.+||+.||+++|.+|+ .+....++.....+.++...+ .|+.+++.|...++..+++++++ .+|....|. .
T Consensus 77 ~~~~~~~g~~~g~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~-~in~~g~~~--~ 152 (511)
T 4djk_A 77 AWVSNTLGPRWGFAAISFGYL-QIAIGFIPMLYFVLGALSYILKWPALNEDPITKTIAALIILWALA-LTQFGGTKY--T 152 (511)
T ss_dssp HHHHHHHCHHHHHHHHHHHHH-HHHHHTHHHHHHHHHHHHTTTTCGGGTSCSSHHHHHHHHHHHHHH-HHHHTCSSS--H
T ss_pred hhHHhhcCchHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhcCcccccCcHHHHHHHHHHHHHHH-HHHHhChHH--H
Confidence 999999999999999999999 555666777777777776422 56666666777777777777666 677775443 3
Q ss_pred hHHHHHH
Q psy9206 177 DRAVLLL 183 (190)
Q Consensus 177 ~~~~~~~ 183 (190)
.+.|.+.
T Consensus 153 ~~~~~~~ 159 (511)
T 4djk_A 153 ARIAKVG 159 (511)
T ss_dssp HHHTHHH
T ss_pred HHHHHHH
Confidence 5555544
No 4
>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A
Probab=96.25 E-value=0.11 Score=44.25 Aligned_cols=91 Identities=13% Similarity=0.058 Sum_probs=49.0
Q ss_pred cccccccchhHHHHHHhhhhhcchhccchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhhcccCcc-hHhhHHH
Q psy9206 24 VQMKRKITLLGGVSIIVGCIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTIGALCYAELGTCISRSGG-DYAYILV 102 (190)
Q Consensus 24 ~~l~r~l~~~~~~~~~~~~~ig~g~~~~~~~~~~~~G~~g~~~~~~li~~i~~~~~~~~~aEl~s~~P~~GG-~y~~~~~ 102 (190)
++-+|+.++++.+.+=++..+..+.+....... . |-. ..-+++...+..+......+-++..-|+.|- +...++.
T Consensus 21 p~~~R~~~~~~~~~~W~g~~~~i~~~~~Ga~~~-~-GLs--~~~a~lai~lG~li~~~~~~l~~~~G~~~Gl~~~v~~R~ 96 (501)
T 2jln_A 21 RYAERSVGPFSLAAIWFAMAIQVAIFIAAGQMT-S-SFQ--VWQVIVAIAAGCTIAVILLFFTQSAAIRWGINFTVAARM 96 (501)
T ss_dssp CGGGCCBCHHHHHHHHHHHHCSTHHHHHHHHHT-T-TSC--HHHHHHHHHHHHHHHHHHHHHHTHHHHHHCCCHHHHTTT
T ss_pred ChhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHh-c-CcC--HHHHHHHHHHHHHHHHHHHHHHhHHHhhcCCChhhhhHh
Confidence 334577899999988777765444443322222 2 321 1222333333333333334444444444344 4446677
Q ss_pred HhCchhHHHHHHHHHH
Q psy9206 103 AFGELPAFLRLWVALL 118 (190)
Q Consensus 103 ~~g~~~~~~~gw~~~~ 118 (190)
.||++.+.+......+
T Consensus 97 ~FG~~Gs~i~~ll~~i 112 (501)
T 2jln_A 97 PFGIRGSLIPITLKAL 112 (501)
T ss_dssp TSCTTTTHHHHHHHHH
T ss_pred hcchhHHHHHHHHHHH
Confidence 8999888887766654
No 5
>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus}
Probab=75.12 E-value=38 Score=28.76 Aligned_cols=150 Identities=8% Similarity=-0.059 Sum_probs=68.7
Q ss_pred ccccchhHHHHHHhhhhhcchhccchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhhcccCcchHhhHHHHhCc
Q psy9206 27 KRKITLLGGVSIIVGCIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTIGALCYAELGTCISRSGGDYAYILVAFGE 106 (190)
Q Consensus 27 ~r~l~~~~~~~~~~~~~ig~g~~~~~~~~~~~~G~~g~~~~~~li~~i~~~~~~~~~aEl~s~~P~~GG~y~~~~~~~g~ 106 (190)
.|+++++-+..-..++.+++..+..........|-.+ ..+.|. ..+.....+..+...-.+. +.-..+.|.++-||+
T Consensus 19 GR~l~~~~~~~s~~at~~Sa~~~lG~~g~~y~~G~~~-~~~~~~-~~~~~~i~~~~~~p~~~~~-~~~T~~e~l~~Rfg~ 95 (530)
T 3dh4_A 19 GKSLPWWAVGASLIAANISAEQFIGMSGSGYSIGLAI-ASYEWM-SAITLIIVGKYFLPIFIEK-GIYTIPEFVEKRFNK 95 (530)
T ss_dssp CSCCCHHHHHHHHHHHHCSHHHHTHHHHHHHHTCGGG-HHHHHH-HHHHHHHHHHHTHHHHHHT-TCCSHHHHHHHHTCH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHH-HHHHHH-HHHHHHHHHHHHHHHHHHc-CCccHHHHHHHHcCc
Confidence 5889998776666666665544444333333445332 222222 2222223333333333222 234588899999999
Q ss_pred hhHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhCCCCCCcHHHHHHHHHHHHHHHHhhhhhhcCCCCchhHHHHHHHH
Q psy9206 107 LPAFLRLWVALLIMRPTTQAIVALTFAQYAIKPFFPDSELPDRAVLLLAAACLCKNGNAIKPFFPDSELPDRAVLLLAA 185 (190)
Q Consensus 107 ~~~~~~gw~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (190)
....+......+.+.....+......+..++. .+ + .+.+...++..++.++-+ ...-......++.+|.++..
T Consensus 96 ~~~~~~a~~~l~~~~~~~~~~~l~~~~~~~~~-~~-G--i~~~~~i~i~~~i~~~Yt--~~GGl~aV~~TD~iQ~~im~ 168 (530)
T 3dh4_A 96 KLKTILAVFWISLYIFVNLTSVLYLGGLALET-IL-G--IPLMYSILGLALFALVYS--IYGGLSAVVWTDVIQVFFLV 168 (530)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHH-HT-T--CCHHHHHHHHHHHHHHTT--C------CCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hh-C--CCHHHHHHHHHHHHHHHH--HhcchHHHHHHHHHHHHHHH
Confidence 87766664433212222334444444555554 22 2 223333333333323222 11222233466777766543
No 6
>2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats, LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus} PDB: 2xq2_B 2kpe_A
Probab=54.77 E-value=1e+02 Score=26.44 Aligned_cols=148 Identities=7% Similarity=-0.072 Sum_probs=63.5
Q ss_pred ccccchhHHHHHHhhhhhcchhccc-hHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhhcccCcchHhhHHHHhC
Q psy9206 27 KRKITLLGGVSIIVGCIIGSGIFVS-PAGVLAETQSVGLSIVIWTVCGLLSTIGALCYAELGTCISRSGGDYAYILVAFG 105 (190)
Q Consensus 27 ~r~l~~~~~~~~~~~~~ig~g~~~~-~~~~~~~~G~~g~~~~~~li~~i~~~~~~~~~aEl~s~~P~~GG~y~~~~~~~g 105 (190)
.|+++++-...-.++..+++.-+.. ++.. ...|-.. ..+.|. ..+.....+..+...-.+. +.-..+.|.++-||
T Consensus 48 GR~l~~~~~~~Sl~at~~sa~t~lG~~g~~-y~~G~~~-~~~~~~-~~~~~~~~~~~~~p~~~r~-~~~T~~e~l~~Rfg 123 (593)
T 2xq2_A 48 GKSLPWWAVGASLIAANISAEQFIGMSGSG-YSIGLAI-ASYEWM-SAITLIIVGKYFLPIFIEK-GIYTIPEFVEKRFN 123 (593)
T ss_dssp ---CCHHHHHHHHHGGGSSHHHHHHHHHHH-HHTCGGG-GHHHHH-HHHHHHHHHHTHHHHHHHT-TCCSHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHhcHHHHhhHhHHH-HHcCHHH-HHHHHH-HHHHHHHHHHHHHHHHHhC-CCCCcHHHHHHHcc
Confidence 4778887554444444444444433 3333 3334221 112221 2222223333333333332 23458889999999
Q ss_pred chhHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhCCCCCCcHHHHHHHHHHHHHHHHhhhhhhcCCCCchhHHHHHHH
Q psy9206 106 ELPAFLRLWVALLIMRPTTQAIVALTFAQYAIKPFFPDSELPDRAVLLLAAACLCKNGNAIKPFFPDSELPDRAVLLLA 184 (190)
Q Consensus 106 ~~~~~~~gw~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (190)
+....+......+.......+......+..++..+ + .+.+...++..+++++-+ ...-......++.+|.++.
T Consensus 124 ~~~~~~~ai~~l~~~~~~~~~~~l~~~~~~l~~~~--G--i~~~~~i~i~~~i~~~Yt--~~GGl~av~~TD~iQ~iim 196 (593)
T 2xq2_A 124 KKLKTILAVFWISLYIFVNLTSVLYLGGLALETIL--G--IPLMYSILGLALFALVYS--IYGGLSAVVWTDVIQVFFL 196 (593)
T ss_dssp HHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--C--CCHHHHHHHHHHHHHHHH--HTTC---CCHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--C--ccHHHHHHHHHHHHHHHH--HhcchHHHHHHHHHHHHHH
Confidence 88776665443321222334444444555555422 2 223333333333333333 1122223346677776544
No 7
>3u85_B Histone-lysine N-methyltransferase MLL; menin, MEN1, JUND, ledgf, TPR, transcription, epigeneti cancer; 3.00A {Homo sapiens}
Probab=6.41 E-value=1.1e+02 Score=13.63 Aligned_cols=7 Identities=29% Similarity=0.515 Sum_probs=4.4
Q ss_pred CCCchhH
Q psy9206 172 DSELPDR 178 (190)
Q Consensus 172 ~~~~~~~ 178 (190)
||.|+||
T Consensus 2 rwrfpar 8 (21)
T 3u85_B 2 RWRFPAR 8 (26)
T ss_pred ccccccC
Confidence 5667665
No 8
>1xc0_A Pardaxin P-4, PA4; BEND-helix-BEND-helix motif, signaling protein; NMR {Synthetic} SCOP: j.6.1.1 PDB: 2kns_A
Probab=5.93 E-value=2.6e+02 Score=13.61 Aligned_cols=13 Identities=38% Similarity=0.836 Sum_probs=7.2
Q ss_pred HHhhhhcccCcch
Q psy9206 84 AELGTCISRSGGD 96 (190)
Q Consensus 84 aEl~s~~P~~GG~ 96 (190)
+..+++...+|||
T Consensus 20 savgsalsssggq 32 (33)
T 1xc0_A 20 SAVGSALSSSGGQ 32 (33)
T ss_dssp HHHHHHTTTTTTC
T ss_pred HHHHHHhhcccCC
Confidence 3445556666664
No 9
>1rh5_C Secbeta; protein translocation, SECY, membrane protein, protein channels, protein transport; 3.20A {Methanocaldococcus jannaschii} SCOP: f.23.29.1 PDB: 1rhz_C 2yxq_C 2yxr_C 3kcr_C 3dkn_C 3bo1_C 3bo0_C
Probab=5.65 E-value=4.2e+02 Score=14.87 Aligned_cols=17 Identities=12% Similarity=0.180 Sum_probs=13.3
Q ss_pred ccccchhHHHHHHhhhh
Q psy9206 27 KRKITLLGGVSIIVGCI 43 (190)
Q Consensus 27 ~r~l~~~~~~~~~~~~~ 43 (190)
+-|+++..++.+++...
T Consensus 25 giKi~P~~Vl~~si~~i 41 (53)
T 1rh5_C 25 KIRVKPEHVIGVTVAFV 41 (53)
T ss_dssp SCCCCHHHHHHHHHHHH
T ss_pred ccccCCeehhhhHHHHH
Confidence 66789998888877755
No 10
>4dve_A Biotin transporter BIOY; ECF-transport, ligand-binding domain, biotin binding, membra transport protein; HET: BTN BNG; 2.09A {Lactococcus lactis subsp}
Probab=4.25 E-value=6.7e+02 Score=18.16 Aligned_cols=49 Identities=14% Similarity=0.184 Sum_probs=23.5
Q ss_pred ccccchhHHHHHHhhhhhcchhccch-HHHHHhcccchHHHHHHHHHHHH
Q psy9206 27 KRKITLLGGVSIIVGCIIGSGIFVSP-AGVLAETQSVGLSIVIWTVCGLL 75 (190)
Q Consensus 27 ~r~l~~~~~~~~~~~~~ig~g~~~~~-~~~~~~~G~~g~~~~~~li~~i~ 75 (190)
.++.+..++...-.-..+|-.+|... +....-.|+.+.-+++|++++.+
T Consensus 63 G~r~G~lsv~lYlllG~~GlPVFagg~gG~~~l~gPTgGYLiGF~~aA~v 112 (198)
T 4dve_A 63 GPKYGTISVGAFLALALIGLPVLTGGNGGAASFLGPSGGYRIAWLFTPFL 112 (198)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCCBTTTBCCSGGGGSTTHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHHcCccccCCCCchhHHhcchhHHHHHHHHHHHH
Confidence 34455666655544445555555442 22222334443345556555543
Done!