Query psy9206
Match_columns 190
No_of_seqs 131 out of 1223
Neff 8.8
Searched_HMMs 13730
Date Fri Aug 16 21:37:55 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9206.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/9206hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2e1ba1 b.43.3.6 (A:1-87) AlaX 7.0 53 0.0039 19.0 0.3 7 90-96 38-44 (87)
2 d1o82a_ a.64.2.1 (A:) Bacterio 6.8 1.8E+02 0.013 15.4 2.5 17 47-63 23-39 (70)
3 d3dtua1 f.24.1.1 (A:14-551) Ba 3.4 7.9E+02 0.057 18.8 5.3 26 93-118 420-449 (538)
4 d1ffta_ f.24.1.1 (A:) Cytochro 3.1 9.2E+02 0.067 18.1 8.1 25 94-118 383-411 (501)
5 d1jb0f_ f.23.16.1 (F:) Subunit 3.1 2.8E+02 0.02 17.5 1.7 9 110-118 72-80 (141)
6 d1xmea1 f.24.1.1 (A:14-562) Ba 2.9 9.7E+02 0.071 18.2 5.4 15 94-108 386-400 (549)
7 d1jb0j_ f.23.18.1 (J:) Subunit 2.4 4.3E+02 0.032 12.7 3.4 20 74-93 17-36 (41)
8 d1knza_ e.34.1.1 (A:) NSP3 hom 2.0 5.7E+02 0.041 16.0 2.2 20 82-101 16-35 (157)
9 d2iuba2 f.17.3.1 (A:286-349) M 1.8 6.2E+02 0.045 12.7 2.7 22 28-51 7-28 (64)
10 d1v54a_ f.24.1.1 (A:) Mitochon 1.6 1.6E+03 0.12 16.8 7.0 25 94-118 391-419 (514)
No 1
>d2e1ba1 b.43.3.6 (A:1-87) AlaX-M trans-editing enzyme, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}
Probab=6.98 E-value=53 Score=18.96 Aligned_cols=7 Identities=29% Similarity=0.667 Sum_probs=3.0
Q ss_pred cccCcch
Q psy9206 90 ISRSGGD 96 (190)
Q Consensus 90 ~P~~GG~ 96 (190)
||++|||
T Consensus 38 YpegGGQ 44 (87)
T d2e1ba1 38 YPTGGGQ 44 (87)
T ss_dssp CCCCTTC
T ss_pred ccCCCCC
Confidence 4444443
No 2
>d1o82a_ a.64.2.1 (A:) Bacteriocin AS-48 {Enterococcus faecalis [TaxId: 1351]}
Probab=6.85 E-value=1.8e+02 Score=15.41 Aligned_cols=17 Identities=24% Similarity=0.325 Sum_probs=7.2
Q ss_pred hhccchHHHHHhcccch
Q psy9206 47 GIFVSPAGVLAETQSVG 63 (190)
Q Consensus 47 g~~~~~~~~~~~~G~~g 63 (190)
|+......++...|+.|
T Consensus 23 g~vttivsil~avgsgg 39 (70)
T d1o82a_ 23 GWVTTIVSILTAVGSGG 39 (70)
T ss_dssp CCHHHHHHHHHHHCHHH
T ss_pred cchhhHHHHHHHHcccc
Confidence 33333344444444443
No 3
>d3dtua1 f.24.1.1 (A:14-551) Bacterial aa3 type cytochrome c oxidase subunit I {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=3.42 E-value=7.9e+02 Score=18.84 Aligned_cols=26 Identities=23% Similarity=0.434 Sum_probs=18.3
Q ss_pred CcchHhhHHHHhCc----hhHHHHHHHHHH
Q psy9206 93 SGGDYAYILVAFGE----LPAFLRLWVALL 118 (190)
Q Consensus 93 ~GG~y~~~~~~~g~----~~~~~~gw~~~~ 118 (190)
=+|.|+|..+..|| +++....|...+
T Consensus 420 ~a~~y~w~Pk~tGr~~~~~l~~~hfwl~~i 449 (538)
T d3dtua1 420 FAGIYFWIGKMSGRQYPEWAGKLHFWMMFV 449 (538)
T ss_dssp HHHHHHHHHHHHSBCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccccHHHHHHHHHHHHH
Confidence 36799999998877 566666565544
No 4
>d1ffta_ f.24.1.1 (A:) Cytochrome O ubiquinol oxidase, subunit I {Escherichia coli [TaxId: 562]}
Probab=3.09 E-value=9.2e+02 Score=18.06 Aligned_cols=25 Identities=20% Similarity=0.226 Sum_probs=16.9
Q ss_pred cchHhhHHHHhCc----hhHHHHHHHHHH
Q psy9206 94 GGDYAYILVAFGE----LPAFLRLWVALL 118 (190)
Q Consensus 94 GG~y~~~~~~~g~----~~~~~~gw~~~~ 118 (190)
++.|+|..+.+|| +++....|...+
T Consensus 383 ~~~y~~~P~l~Gr~l~~~l~~~~f~~~~i 411 (501)
T d1ffta_ 383 AGMTYWWPKAFGFKLNETWGKRAFWFWII 411 (501)
T ss_dssp HHHHHHHHHHHSCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccccchHHHHHHHHHHHH
Confidence 6789999988776 455555555444
No 5
>d1jb0f_ f.23.16.1 (F:) Subunit III of photosystem I reaction centre, PsaF {Synechococcus elongatus [TaxId: 32046]}
Probab=3.07 E-value=2.8e+02 Score=17.46 Aligned_cols=9 Identities=11% Similarity=0.807 Sum_probs=6.3
Q ss_pred HHHHHHHHH
Q psy9206 110 FLRLWVALL 118 (190)
Q Consensus 110 ~~~gw~~~~ 118 (190)
|++||+.|.
T Consensus 72 YIAGwIGWa 80 (141)
T d1jb0f_ 72 YIAGWIGWV 80 (141)
T ss_dssp HHHHHHHHH
T ss_pred HHhhhhhhh
Confidence 567777665
No 6
>d1xmea1 f.24.1.1 (A:14-562) Bacterial ba3 type cytochrome c oxidase subunit I {Thermus thermophilus [TaxId: 274]}
Probab=2.91 E-value=9.7e+02 Score=18.19 Aligned_cols=15 Identities=20% Similarity=0.113 Sum_probs=12.2
Q ss_pred cchHhhHHHHhCchh
Q psy9206 94 GGDYAYILVAFGELP 108 (190)
Q Consensus 94 GG~y~~~~~~~g~~~ 108 (190)
|+.|+|..+.+||..
T Consensus 386 g~~y~~~P~ltGr~l 400 (549)
T d1xmea1 386 GSLYWLLPNLTGKPI 400 (549)
T ss_dssp HTHHHHHHHHHCCCC
T ss_pred HHHHHHHHHHhCcch
Confidence 678999999988843
No 7
>d1jb0j_ f.23.18.1 (J:) Subunit IX of photosystem I reaction centre, PsaJ {Synechococcus elongatus [TaxId: 32046]}
Probab=2.41 E-value=4.3e+02 Score=12.68 Aligned_cols=20 Identities=20% Similarity=0.077 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHhhhhcccC
Q psy9206 74 LLSTIGALCYAELGTCISRS 93 (190)
Q Consensus 74 i~~~~~~~~~aEl~s~~P~~ 93 (190)
+-..+.+=.+-|+...+|+.
T Consensus 17 ~w~~~tAG~lIEiNRFfPD~ 36 (41)
T d1jb0j_ 17 IWMTITAGILIEFNRFYPDL 36 (41)
T ss_dssp HHHHHHHHHHHHHHHHSCCC
T ss_pred HHHHHHHHHHHHHHhhCchh
Confidence 33444555677888888874
No 8
>d1knza_ e.34.1.1 (A:) NSP3 homodimer {Simian 11 rotavirus [TaxId: 10923]}
Probab=2.04 E-value=5.7e+02 Score=15.98 Aligned_cols=20 Identities=15% Similarity=0.257 Sum_probs=14.2
Q ss_pred HHHHhhhhcccCcchHhhHH
Q psy9206 82 CYAELGTCISRSGGDYAYIL 101 (190)
Q Consensus 82 ~~aEl~s~~P~~GG~y~~~~ 101 (190)
..+-..+.....|++|.|..
T Consensus 16 A~~~~~s~l~~~gi~yD~~e 35 (157)
T d1knza_ 16 AVVAATSALENMGIEYDYQD 35 (157)
T ss_dssp HHHHHHHHHHHTTCCCCHHH
T ss_pred HHHHHHHHHHHcCCcchHHH
Confidence 34445556667899999987
No 9
>d2iuba2 f.17.3.1 (A:286-349) Magnesium transport protein CorA {Thermotoga maritima [TaxId: 2336]}
Probab=1.79 E-value=6.2e+02 Score=12.73 Aligned_cols=22 Identities=18% Similarity=0.418 Sum_probs=13.0
Q ss_pred cccchhHHHHHHhhhhhcchhccc
Q psy9206 28 RKITLLGGVSIIVGCIIGSGIFVS 51 (190)
Q Consensus 28 r~l~~~~~~~~~~~~~ig~g~~~~ 51 (190)
|.++..+++.+-.+.+ +|+|..
T Consensus 7 k~lT~it~iflP~t~i--~gifGM 28 (64)
T d2iuba2 7 KVLTIIATIFMPLTFI--AGIYGM 28 (64)
T ss_dssp HHHHHHHHHHHHHHHH--TTSCC-
T ss_pred HHHHHHHHHHHHHHHH--Hhhhcc
Confidence 4566676666655555 466655
No 10
>d1v54a_ f.24.1.1 (A:) Mitochondrial cytochrome c oxidase, subunit I {Cow (Bos taurus) [TaxId: 9913]}
Probab=1.55 E-value=1.6e+03 Score=16.76 Aligned_cols=25 Identities=16% Similarity=0.149 Sum_probs=17.3
Q ss_pred cchHhhHHHHhCc----hhHHHHHHHHHH
Q psy9206 94 GGDYAYILVAFGE----LPAFLRLWVALL 118 (190)
Q Consensus 94 GG~y~~~~~~~g~----~~~~~~gw~~~~ 118 (190)
+|.|+|-.+.+|| +++....|...+
T Consensus 391 a~~y~w~Pk~~Gr~~~e~l~~~~f~~~fi 419 (514)
T d1v54a_ 391 GGFVHWFPLFSGYTLNDTWAKIHFAIMFV 419 (514)
T ss_dssp HHHHHHHHHHHSBCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccChhhHHHHHHHHHHHHHH
Confidence 5789999988776 556666555544
Done!