RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy9206
(190 letters)
>gnl|CDD|233179 TIGR00911, 2A0308, L-type amino acid transporter. [Transport and
binding proteins, Amino acids, peptides and amines].
Length = 501
Score = 191 bits (486), Expect = 1e-58
Identities = 83/144 (57%), Positives = 105/144 (72%)
Query: 16 STEGSPIKVQMKRKITLLGGVSIIVGCIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLL 75
ST V +K++ITLL GV IIVG IIGSGIFVSP GVL SVGL++++W VCG+
Sbjct: 30 STVDGGEAVALKKEITLLSGVGIIVGTIIGSGIFVSPKGVLKNAGSVGLALIMWAVCGIF 89
Query: 76 STIGALCYAELGTCISRSGGDYAYILVAFGELPAFLRLWVALLIMRPTTQAIVALTFAQY 135
S +GAL YAELGT I +SGG+Y YIL FG L AFLRLW+ LL++RP +QA+ AL FA Y
Sbjct: 90 SIVGALVYAELGTTIPKSGGEYNYILEVFGPLLAFLRLWIELLVIRPGSQAVNALNFAIY 149
Query: 136 AIKPFFPDSELPDRAVLLLAAACL 159
+ P FPD E+P+ A+ L+A C+
Sbjct: 150 ILTPVFPDCEVPEWAIRLVAVLCV 173
>gnl|CDD|129984 TIGR00906, 2A0303, cationic amino acid transport permease.
[Transport and binding proteins, Amino acids, peptides
and amines].
Length = 557
Score = 62.9 bits (153), Expect = 6e-12
Identities = 38/108 (35%), Positives = 60/108 (55%), Gaps = 7/108 (6%)
Query: 12 VEVKSTEGSPIKVQMKRKITLLGGVSIIVGCIIGSGIFVSPAGVLAETQSVGLSIVI-WT 70
V++ S E S +MKR +T +++ +G IG+GI+V G +A S G +IV+ +
Sbjct: 16 VDLDSREES----KMKRCLTTWDLMALGIGSTIGAGIYVL-TGEVARNDS-GPAIVLSFL 69
Query: 71 VCGLLSTIGALCYAELGTCISRSGGDYAYILVAFGELPAFLRLWVALL 118
+ GL + + CYAE G + ++G Y Y V GEL AF+ W +L
Sbjct: 70 ISGLAAVLSGFCYAEFGARVPKAGSAYLYSYVTVGELWAFITGWNLIL 117
>gnl|CDD|183096 PRK11357, frlA, putative fructoselysine transporter; Provisional.
Length = 445
Score = 62.2 bits (151), Expect = 1e-11
Identities = 33/111 (29%), Positives = 53/111 (47%)
Query: 25 QMKRKITLLGGVSIIVGCIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTIGALCYA 84
+++RK+ ++I VG +GSGIFVS V + L+++ + + GL+ YA
Sbjct: 5 ELQRKLGFWAVLAIAVGTTVGSGIFVSVGEVAKAAGTPWLTVLAFVIGGLIVIPQMCVYA 64
Query: 85 ELGTCISRSGGDYAYILVAFGELPAFLRLWVALLIMRPTTQAIVALTFAQY 135
EL T +G DY Y+ A AFL W + + +I+AL
Sbjct: 65 ELSTAYPENGADYVYLKNAGSRPLAFLSGWASFWANDAPSLSIMALAIVSN 115
>gnl|CDD|222193 pfam13520, AA_permease_2, Amino acid permease.
Length = 425
Score = 61.9 bits (151), Expect = 1e-11
Identities = 42/130 (32%), Positives = 63/130 (48%), Gaps = 4/130 (3%)
Query: 30 ITLLGGVSIIVGCIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTIGALCYAELGTC 89
++LL ++++G IIGSGIFV+P L + + W + S AL YAEL +
Sbjct: 1 LSLLSAFALVIGSIIGSGIFVTP---LIASAGAAAILWGWIAALIFSLAVALVYAELSSA 57
Query: 90 ISRSGGDYAYILVAFGELPAFLRLWVALLIMRPTTQAIVALTFAQYAIKPFFPDSELPDR 149
R+GG Y ++ AFG+ AF+ W L + ++ AQY + FFPD
Sbjct: 58 FPRNGGIYVWLKNAFGKPVAFIAAWFNWLAYILGLASSSSV-AAQYLLSAFFPDLVGNTW 116
Query: 150 AVLLLAAACL 159
+A A L
Sbjct: 117 LTYGIAIAIL 126
>gnl|CDD|223605 COG0531, PotE, Amino acid transporters [Amino acid transport and
metabolism].
Length = 466
Score = 58.6 bits (142), Expect = 2e-10
Identities = 38/112 (33%), Positives = 56/112 (50%), Gaps = 5/112 (4%)
Query: 25 QMKRKITLLGGV-SIIVGCIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTIGALCY 83
++K+K+ L + ++ VG +IGSGIF P +I+ W + G++ AL Y
Sbjct: 9 ELKKKLGLFDLLTALGVGSMIGSGIFALPGSAAGLA---PAAILAWLIAGIIILFLALSY 65
Query: 84 AELGTCISRSGGDYAYILVAFGELPAFLRLWVALLIMRPTTQAIVALTFAQY 135
AEL + I +GG YAY A G FL W+ LL A +A+ A Y
Sbjct: 66 AELSSAIPSAGGAYAYAKRALGPRLGFLAGWLYLLAY-VIALAAIAIGAASY 116
>gnl|CDD|129987 TIGR00909, 2A0306, amino acid transporter. [Transport and binding
proteins, Amino acids, peptides and amines].
Length = 429
Score = 57.1 bits (138), Expect = 6e-10
Identities = 35/110 (31%), Positives = 54/110 (49%), Gaps = 3/110 (2%)
Query: 26 MKRKITLLGGVSIIVGCIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTIGALCYAE 85
+ R++ L + +G +IG+GIFV G+ A + I+ + + GL + AL YAE
Sbjct: 1 LSRELGLFDLTMLGIGAMIGTGIFVV-TGIAAGKAGPAV-ILSFVLAGLTALFIALVYAE 58
Query: 86 LGTCISRSGGDYAYILVAFGELPAFLRLWVALLIMRPTTQAIVALTFAQY 135
L + +G Y Y A GEL AF+ W L + A VA+ + Y
Sbjct: 59 LAAMLPVAGSPYTYAYEAMGELTAFIIGWS-LWLEYGVAVAAVAVGWGGY 107
>gnl|CDD|129983 TIGR00905, 2A0302, transporter, basic amino acid/polyamine
antiporter (APA) family. This family includes several
families of antiporters that, rather commonly, are
encoded next to decarboxylases that convert one of the
antiporter substrates into the other. This arrangement
allows a cycle that can remove proteins from the
cytoplasm and thereby protect against acidic conditions
[Transport and binding proteins, Amino acids, peptides
and amines].
Length = 473
Score = 44.3 bits (105), Expect = 1e-05
Identities = 29/91 (31%), Positives = 41/91 (45%), Gaps = 2/91 (2%)
Query: 25 QMKRKITLLGGVSIIVGCIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTIGALCYA 84
+K+ L ++++G +IGSGIF P LA G I+ W + G+ A +A
Sbjct: 4 AKSKKLGLFALTALVIGSMIGSGIFSLPQN-LASVAGPGAVIIGWIITGVGMLALAFVFA 62
Query: 85 ELGTCISR-SGGDYAYILVAFGELPAFLRLW 114
L T GG YAY FG F+ W
Sbjct: 63 ILATKKPELDGGIYAYAREGFGPYIGFMSGW 93
>gnl|CDD|182613 PRK10644, PRK10644, arginine:agmatin antiporter; Provisional.
Length = 445
Score = 40.2 bits (94), Expect = 3e-04
Identities = 30/82 (36%), Positives = 44/82 (53%), Gaps = 11/82 (13%)
Query: 28 RKITLLGGVSIIVGCIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTIGAL----CY 83
K+ L+ ++ G I+GSG+F+ PA LA T G++I W L++ IGAL Y
Sbjct: 8 HKVGLIPVTLMVAGNIMGSGVFLLPAN-LASTG--GIAIYGW----LVTIIGALGLSMVY 60
Query: 84 AELGTCISRSGGDYAYILVAFG 105
A++ + GG YAY FG
Sbjct: 61 AKMSSLDPSPGGSYAYARRCFG 82
>gnl|CDD|215858 pfam00324, AA_permease, Amino acid permease.
Length = 473
Score = 36.2 bits (84), Expect = 0.007
Identities = 18/67 (26%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Query: 34 GGVSIIVGCIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTIGALCYAELGTCISRS 93
+ I +G +IG+G+FV VL + +++ + + G++ + L E+ T +
Sbjct: 1 HVLMIALGGVIGTGLFVGSGSVLGQA-GPAGALLGYLIAGVVIFLTMLSLGEMSTNGPVA 59
Query: 94 GGDYAYI 100
GG YAY
Sbjct: 60 GGFYAYA 66
>gnl|CDD|182622 PRK10655, potE, putrescine transporter; Provisional.
Length = 438
Score = 35.0 bits (81), Expect = 0.016
Identities = 28/96 (29%), Positives = 47/96 (48%), Gaps = 6/96 (6%)
Query: 27 KRKITLLGGVSIIVGCIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTIGALCYAEL 86
K+ ++ + ++GSGI + P LA+ ++ SI+ W V + S A +A+
Sbjct: 5 SNKMGVVQLTILTAVNMMGSGIIMLPTK-LAQVGTI--SILSWLVTAVGSMALAYAFAKC 61
Query: 87 GTCISRSGGDYAYILVAFGELPAFLRLW---VALLI 119
G +SGG Y AFG+ F+ + V+LLI
Sbjct: 62 GMFSRKSGGMGGYAEYAFGKSGNFMANYTYGVSLLI 97
>gnl|CDD|182458 PRK10435, cadB, lysine/cadaverine antiporter; Provisional.
Length = 435
Score = 31.6 bits (72), Expect = 0.21
Identities = 33/88 (37%), Positives = 46/88 (52%), Gaps = 16/88 (18%)
Query: 28 RKITLLGGVSIIVGCIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTIGAL----CY 83
+KI L ++ G ++GSGI + PA + S+G SI IW ++S IGA+ Y
Sbjct: 5 KKIGLFACTGVVAGNMMGSGIALLPANL----ASIG-SIAIWG--WIISIIGAMSLAYVY 57
Query: 84 AELGTCISRSGGDYAYILVAFGEL-PAF 110
A L T + GG AY GE+ PAF
Sbjct: 58 ARLATKNPQQGGPIAYA----GEISPAF 81
>gnl|CDD|163522 TIGR03810, arg_ornith_anti, arginine-ornithine antiporter. Members
of this protein family are the arginine/ornithine
antiporter, ArcD. This exchanger of ornithine for
arginine occurs in a system with arginine deiminase,
ornithine carbamoyltransferase, and carbamate kinase,
with together turn arginine to ornithine with the
generation of ATP and release of CO2 [Transport and
binding proteins, Amino acids, peptides and amines].
Length = 468
Score = 31.2 bits (71), Expect = 0.35
Identities = 25/88 (28%), Positives = 41/88 (46%), Gaps = 2/88 (2%)
Query: 28 RKITLLGGVSIIVGCIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTIGALCYAELG 87
+K+ L +++VG +IGSGIF P+ +A + G ++ W + G+ A + L
Sbjct: 1 KKLGLGALTALVVGSMIGSGIFSLPSD-MAAGAAAGAVLIGWVITGVGMLALAFSFQNLA 59
Query: 88 TCISR-SGGDYAYILVAFGELPAFLRLW 114
GG Y+Y FG F+ W
Sbjct: 60 NKKPELDGGVYSYAKAGFGPFMGFISAW 87
>gnl|CDD|213912 TIGR04299, antiport_PotE, putrescine-ornithine antiporter. Members
of this protein family are putrescine-ornithine
antiporter. They work together with an enzyme that
decarboxylates ornithine to putrescine. This two-gene
system has the net effect of removing a protein from the
cytosol, providing transient resistance to acid
conditions.
Length = 430
Score = 30.2 bits (68), Expect = 0.57
Identities = 24/87 (27%), Positives = 44/87 (50%), Gaps = 3/87 (3%)
Query: 25 QMKRKITLLGGVSIIVGCIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTIGALCYA 84
K+K++++ + ++GSGI + P LA+ + +SI+ W V + + A +A
Sbjct: 1 AKKKKMSVVQLTILTAVNMMGSGIIMLPTN-LAQVGT--MSIISWLVTAVGAMALAWAFA 57
Query: 85 ELGTCISRSGGDYAYILVAFGELPAFL 111
G S+SGG Y +FG+ F+
Sbjct: 58 RAGMYSSKSGGMGGYAEYSFGKAGNFM 84
>gnl|CDD|165129 PHA02764, PHA02764, hypothetical protein; Provisional.
Length = 399
Score = 29.9 bits (67), Expect = 0.75
Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
Query: 81 LCYAELGTCISRSGGDYAYILVAFGE--LPAF-LRLWVALLIMRPTTQAIVALTF 132
L Y +L T +GGDYAYI AF F + LW+ ++ +P +V L F
Sbjct: 64 LMYYKLTTKFPLNGGDYAYIRTAFSSKFYTIFGISLWLTYVLSQPILGDLVLLNF 118
>gnl|CDD|182492 PRK10483, PRK10483, tryptophan permease; Provisional.
Length = 414
Score = 29.7 bits (67), Expect = 0.81
Identities = 14/22 (63%), Positives = 17/22 (77%)
Query: 31 TLLGGVSIIVGCIIGSGIFVSP 52
+LLGGV II G IIG+G+F P
Sbjct: 12 SLLGGVVIIGGTIIGAGMFSLP 33
>gnl|CDD|223884 COG0814, SdaC, Amino acid permeases [Amino acid transport and
metabolism].
Length = 415
Score = 29.5 bits (67), Expect = 0.89
Identities = 16/61 (26%), Positives = 27/61 (44%), Gaps = 2/61 (3%)
Query: 25 QMKRKITLLGGVSIIVGCIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTIGALCYA 84
MK+ + LGGV I+ G IG+G+ P V +++ + L+ + L
Sbjct: 4 SMKKTSSDLGGVLILAGTAIGAGVLFLP--VAFGGGGFWPGLLLLIIAWPLTYLSLLLLL 61
Query: 85 E 85
E
Sbjct: 62 E 62
>gnl|CDD|129986 TIGR00908, 2A0305, ethanolamine permease. The three genes used as
the seed for this model (from Burkholderia pseudomallei,
Pseudomonas aeruginosa and Clostridium acetobutylicum
are all adjacent to genes for the catabolism of
ethanolamine. Most if not all of the hits to this model
have a similar arrangement of genes. This group is a
member of the Amino Acid-Polyamine-Organocation (APC)
Superfamily [Transport and binding proteins, Amino
acids, peptides and amines].
Length = 442
Score = 29.4 bits (66), Expect = 1.1
Identities = 24/74 (32%), Positives = 31/74 (41%), Gaps = 2/74 (2%)
Query: 38 IIVGCIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTIGALCYAELGTCISRSGGDY 97
I VG +I SG + LA+ G + V + T AEL T I +GG Y
Sbjct: 17 IGVGYVI-SGDYAGWNFGLAQGGWGGFVVATLLVATMYLTF-CFSLAELSTMIPTAGGGY 74
Query: 98 AYILVAFGELPAFL 111
+ AFG FL
Sbjct: 75 GFARRAFGPWGGFL 88
>gnl|CDD|227252 COG4915, XpaC, 5-bromo-4-chloroindolyl phosphate hydrolysis protein
[General function prediction only].
Length = 204
Score = 28.6 bits (64), Expect = 1.4
Identities = 19/81 (23%), Positives = 26/81 (32%), Gaps = 14/81 (17%)
Query: 26 MKRKITLLGGVSIIVGCIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGL---LSTIGA-- 80
M +LG + + +I GI L S+G+SIVI
Sbjct: 1 MNHFDMMLGYGLLGIVVVIFGGIL----FFLILKMSIGISIVIGNADEAEEYYKDKKMSK 56
Query: 81 -LCYAELGTCISRSGGDYAYI 100
E G + DY YI
Sbjct: 57 RERLHEAGL----TDKDYKYI 73
>gnl|CDD|181922 PRK09512, rbsC, ribose ABC transporter permease protein; Reviewed.
Length = 320
Score = 28.9 bits (65), Expect = 1.5
Identities = 29/82 (35%), Positives = 43/82 (52%), Gaps = 7/82 (8%)
Query: 43 IIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTIGALCYAELGTCISRSGGDYAYILV 102
I+ SGI +S +LA T +V SIV V L++ AL LG I G ++V
Sbjct: 66 ILTSGIDLSVGSLLALTGAVAASIVGIEVNALVAVPAALA---LGAAIGAVTG----VIV 118
Query: 103 AFGELPAFLRLWVALLIMRPTT 124
A G++ AF+ V +L++R T
Sbjct: 119 AKGKVQAFIATLVMMLLLRGVT 140
>gnl|CDD|235048 PRK02515, psbU, photosystem II complex extrinsic protein
precursor U; Provisional.
Length = 132
Score = 27.7 bits (62), Expect = 1.9
Identities = 11/42 (26%), Positives = 19/42 (45%), Gaps = 3/42 (7%)
Query: 26 MKRKITLLGGVSIIVGCIIGSGIFVSPAGVLAETQSVGLSIV 67
MKR ++LL G S+++G + G +P A +
Sbjct: 1 MKRLLSLLTGFSLLLGLL---GWLGTPQSAQAAELPLLAVPQ 39
>gnl|CDD|184048 PRK13428, PRK13428, F0F1 ATP synthase subunit delta; Provisional.
Length = 445
Score = 28.5 bits (64), Expect = 2.2
Identities = 12/23 (52%), Positives = 15/23 (65%)
Query: 19 GSPIKVQMKRKITLLGGVSIIVG 41
G P+ VQ+ LLGG+SI VG
Sbjct: 402 GRPVSVQLHIDPELLGGLSIAVG 424
>gnl|CDD|217759 pfam03845, Spore_permease, Spore germination protein.
Length = 320
Score = 28.4 bits (64), Expect = 2.3
Identities = 14/58 (24%), Positives = 27/58 (46%), Gaps = 3/58 (5%)
Query: 29 KITLLGGVSIIVGCIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTIGALCYAEL 86
KI+ +IV +GSGI P + + +++++ GL+ + L Y +L
Sbjct: 1 KISTSQTFFLIVSFQLGSGILTLPRSLAKQAGDGWIAVLL---GGLIGLLLVLLYYKL 55
>gnl|CDD|237517 PRK13807, PRK13807, maltose phosphorylase; Provisional.
Length = 756
Score = 28.3 bits (64), Expect = 2.6
Identities = 10/40 (25%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Query: 2 TLNGNVSANGVEVKSTEGSPIKVQM-KRKITLLGGVSIIV 40
L V V ++ G P+ +++ +K+ L GV++ V
Sbjct: 717 LLKVKVDKQEVTIELLSGEPLTIEVYGKKVELKKGVTVTV 756
>gnl|CDD|235668 PRK06007, fliF, flagellar MS-ring protein; Reviewed.
Length = 542
Score = 28.3 bits (64), Expect = 2.7
Identities = 9/26 (34%), Positives = 15/26 (57%)
Query: 26 MKRKITLLGGVSIIVGCIIGSGIFVS 51
KRKI L+G + +V I+ ++ S
Sbjct: 21 KKRKIALIGAGAAVVAAIVALVLWAS 46
>gnl|CDD|213911 TIGR04298, his_histam_anti, histidine-histamine antiporter.
Members of this protein family are antiporters that
exchange histidine with histamine, product of histidine
decarboxylation. A system consisting of this protein,
and a histidine decarboxylase encoded by an adjacent
gene, creates decarboxylation/antiport proton-motive
cycle that provides a transient resistance to acidic
conditions.
Length = 429
Score = 28.0 bits (62), Expect = 3.1
Identities = 22/68 (32%), Positives = 36/68 (52%), Gaps = 3/68 (4%)
Query: 43 IIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTIGALCYAELGTCISRSGGDYAYILV 102
++GSG+F+ P LA ++ + I+T+ G+++ AL +A+ R GG AY
Sbjct: 15 MMGSGVFLLPTN-LAGIGAISIFGWIFTIIGVIAL--ALVFAKTSLIHERIGGIVAYARD 71
Query: 103 AFGELPAF 110
AFG F
Sbjct: 72 AFGPFIGF 79
>gnl|CDD|173387 PTZ00093, PTZ00093, nucleoside diphosphate kinase, cytosolic;
Provisional.
Length = 149
Score = 26.6 bits (59), Expect = 5.2
Identities = 11/29 (37%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Query: 115 VALLIMRPTTQAIVALTFAQYAIKPFFPD 143
VAL +++PT + I + ++ KPFFP
Sbjct: 34 VALKMLQPTPE-IAEEHYKEHKGKPFFPG 61
>gnl|CDD|163525 TIGR03813, put_Glu_GABA_T, putative glutamate/gamma-aminobutyrate
antiporter. Members of this protein family are putative
putative glutamate/gamma-aminobutyrate antiporters. Each
member of the seed alignment is found adjacent to a
glutamate decarboxylase, which converts glutamate (Glu)
to gamma-aminobutyrate (GABA). However, the majority
belong to genome contexts with a glutaminase (converts
Gln to Glu) as well as the decarboxylase that converts
Glu to GABA. The specificity of the transporter remains
uncertain.
Length = 474
Score = 27.1 bits (60), Expect = 5.8
Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
Query: 80 ALCYAELGTCISRSGGDYAYILVAFGELPAFLRLWVALLIMRPTTQAIVALTFAQYAI 137
+L AEL T GG + ++ AFG FL ++ +L + T LTF ++
Sbjct: 48 SLVAAELATAWPEKGGVFRWVGEAFGARWGFLAIF--MLWAQVTIWFPTVLTFGAVSL 103
>gnl|CDD|165708 PLN00140, PLN00140, alcohol acetyltransferase family protein;
Provisional.
Length = 444
Score = 27.1 bits (60), Expect = 6.9
Identities = 17/67 (25%), Positives = 23/67 (34%), Gaps = 5/67 (7%)
Query: 109 AFLRLWVALLIMRPTTQAIVALTFAQYAIKPFFPDSE-LPDRAVLLLAAACLCKNGNAIK 167
AFL W A + L A FFP P + +LL+ K K
Sbjct: 166 AFLDSWAANTRGHYSEVINPDLFEAS----SFFPPLNSFPVQFLLLMEENWFFKENYITK 221
Query: 168 PFFPDSE 174
F D++
Sbjct: 222 RFVFDAK 228
>gnl|CDD|185009 PRK15049, PRK15049, L-asparagine permease; Provisional.
Length = 499
Score = 26.9 bits (59), Expect = 7.4
Identities = 23/79 (29%), Positives = 37/79 (46%), Gaps = 4/79 (5%)
Query: 38 IIVGCIIGSGIFVSPAGVLAETQSVGLSI-VIWTVCGLLSTIGALCYAELGTCISRSGGD 96
I +G IG+G+F+ G A Q G ++ +++ +CGL S EL SG
Sbjct: 38 IAIGGAIGTGLFL---GAGARLQMAGPALALVYLICGLFSFFILRALGELVLHRPSSGSF 94
Query: 97 YAYILVAFGELPAFLRLWV 115
+Y GE A++ W+
Sbjct: 95 VSYAREFLGEKAAYVAGWM 113
>gnl|CDD|114701 pfam05993, Reovirus_M2, Reovirus major virion structural protein
Mu-1/Mu-1C (M2). This family consists of several
Reovirus major virion structural protein Mu-1/Mu-1C (M2)
sequences. This family is family is thought to play a
role in host cell membrane penetration.
Length = 648
Score = 26.7 bits (58), Expect = 8.8
Identities = 24/72 (33%), Positives = 36/72 (50%), Gaps = 4/72 (5%)
Query: 118 LIMRPTTQAIVALTFAQYAIKPFFPDSELPD---RAVLLLAAACLCKNGNAIKPFFPDSE 174
L +R +A A AIKP D++ D A+ +AAA L + A P S+
Sbjct: 187 LCLRYPKEAANAAAHRNGAIKPGNMDTKEGDAMAEALGAVAAAALAASAEA-GPLEEKSK 245
Query: 175 LPDRAVLLLAAA 186
L ++A+ L+AAA
Sbjct: 246 LLEQAIDLMAAA 257
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.325 0.140 0.424
Gapped
Lambda K H
0.267 0.0729 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 9,735,893
Number of extensions: 942862
Number of successful extensions: 1384
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1367
Number of HSP's successfully gapped: 81
Length of query: 190
Length of database: 10,937,602
Length adjustment: 91
Effective length of query: 99
Effective length of database: 6,901,388
Effective search space: 683237412
Effective search space used: 683237412
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 56 (25.3 bits)