RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy9206
(190 letters)
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound,
amino-acid transport, cell inner membrane, cell
membrane, membrane; HET: ARG BNG; 3.00A {Escherichia
coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A
3ncy_A
Length = 445
Score = 83.2 bits (206), Expect = 3e-19
Identities = 33/136 (24%), Positives = 57/136 (41%), Gaps = 7/136 (5%)
Query: 25 QMKRKITLLGGVSIIVGCIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTIGALCYA 84
K+ L+ ++ G I+GSG+F+ PA + + G++I W V + + ++ YA
Sbjct: 5 ADAHKVGLIPVTLMVSGAIMGSGVFLLPANL---ASTGGIAIYGWLVTIIGALGLSMVYA 61
Query: 85 ELGTCISRSGGDYAYILVAFGELPAFLRLWVALLIMRPTTQAIVALTFAQYAIKPFFPDS 144
++ GG YAY FG + + L A+V + + FFP
Sbjct: 62 KMSFLDPSPGGSYAYARRCFGPFLGYQTNVLYWLACWIGNIAMVVIGVG--YLSYFFP-- 117
Query: 145 ELPDRAVLLLAAACLC 160
L D VL + +
Sbjct: 118 ILKDPWVLTITCVVVL 133
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell
membrane, membrane, transmembrane, transport protein;
HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB:
3gi9_C* 3gi8_C
Length = 444
Score = 67.0 bits (164), Expect = 1e-13
Identities = 30/119 (25%), Positives = 55/119 (46%), Gaps = 8/119 (6%)
Query: 25 QMKRKITLLGGVSIIVGCIIGSGIFVSPAGVLAET--QSVGLSIVIWTVCGLLSTIGALC 82
+K++L VS+ VG +IG+ IF GV A+ +++ + ++ G+ + + A
Sbjct: 3 LKNKKLSLWEAVSMAVGVMIGASIFSIF-GVGAKIAGRNLPETFIL---SGIYALLVAYS 58
Query: 83 YAELGTCISRSGGDYAYILVAFGE-LPAFLRLWVALLIMRPTTQAIVALTFAQYAIKPF 140
Y +LG I + G A+I A G+ + L + + A+ A FA Y +
Sbjct: 59 YTKLGAKIVSNAGPIAFIHKAIGDNIITGALSI-LLWMSYVISIALFAKGFAGYFLPLI 116
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT,
glutamate-GABA antiporter, transport protein; 3.10A
{Escherichia coli} PDB: 4dji_A
Length = 511
Score = 51.0 bits (122), Expect = 5e-08
Identities = 27/134 (20%), Positives = 45/134 (33%), Gaps = 13/134 (9%)
Query: 27 KRKITLLGGVSIIVGCIIGSGIFVSPAGVLAETQSVGLSIVI-WTVCGLLSTI-GALCYA 84
+++TLLG I S + T G S+V + G+L I LC A
Sbjct: 10 AKQLTLLG-----FFAITASMVMAVYEYPTFATS--GFSLVFFLLLGGILWFIPVGLCAA 62
Query: 85 ELGTCIS-RSGGDYAYILVAFGELPAFL---RLWVALLIMRPTTQAIVALTFAQYAIKPF 140
E+ T GG +A++ G F ++ + I V + P
Sbjct: 63 EMATVDGWEEGGVFAWVSNTLGPRWGFAAISFGYLQIAIGFIPMLYFVLGALSYILKWPA 122
Query: 141 FPDSELPDRAVLLL 154
+ + L+
Sbjct: 123 LNEDPITKTIAALI 136
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 36.2 bits (83), Expect = 0.005
Identities = 25/120 (20%), Positives = 42/120 (35%), Gaps = 39/120 (32%)
Query: 48 IFVSPAGVLAETQS-----VGLSIVIW-------------TVCGLLSTIG---AL-CYAE 85
F S G+L+ TQ + + T G S +G AL A+
Sbjct: 1718 TFRSEKGLLSATQFTQPALTLMEKAAFEDLKSKGLIPADATFAG-HS-LGEYAALASLAD 1775
Query: 86 ---LGTCIS----RSGGDYAYILVAFGELPAFLRLWVALLIMRPTTQAIVALTFAQYAIK 138
+ + + R G + V EL R ++ + P VA +F+Q A++
Sbjct: 1776 VMSIESLVEVVFYR--GMTMQVAVPRDELG---RSNYGMIAINPGR---VAASFSQEALQ 1827
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 34.5 bits (78), Expect = 0.008
Identities = 9/27 (33%), Positives = 14/27 (51%), Gaps = 4/27 (14%)
Query: 125 QAIVALTFAQYAIKPFFPDSELPDRAV 151
QA+ L Q ++K + DS P A+
Sbjct: 20 QALKKL---QASLKLYADDSA-PALAI 42
Score = 30.7 bits (68), Expect = 0.15
Identities = 5/17 (29%), Positives = 9/17 (52%), Gaps = 1/17 (5%)
Query: 164 NAIKPFFPDSELPDRAV 180
++K + DS P A+
Sbjct: 27 ASLKLYADDSA-PALAI 42
>3jqy_B NEUO, polysialic acid O-acetyltransferase; LEFT-handed beta-helix
polysia; HET: PEG; 1.70A {Escherichia coli}
Length = 252
Score = 28.2 bits (63), Expect = 1.3
Identities = 10/30 (33%), Positives = 17/30 (56%), Gaps = 3/30 (10%)
Query: 31 TLLGGVSIIVGCIIGSGIFVS---PAGVLA 57
+++ GVS+ G +IG G V+ P+ A
Sbjct: 177 SIMKGVSVGSGSVIGYGSIVTKDVPSMCAA 206
>1krr_A Galactoside O-acetyltransferase; LEFT-handed parallel beta helix;
HET: ACO; 2.50A {Escherichia coli} SCOP: b.81.1.3 PDB:
1kqa_A* 1kru_A* 1krv_A*
Length = 203
Score = 27.9 bits (63), Expect = 1.5
Identities = 10/30 (33%), Positives = 16/30 (53%), Gaps = 3/30 (10%)
Query: 31 TLLGGVSIIVGCIIGSGIFVS---PAGVLA 57
+ GV+I +IG+G V+ P V+A
Sbjct: 145 VINPGVTIGDNSVIGAGSIVTKDIPPNVVA 174
>3nz2_A Hexapeptide-repeat containing-acetyltransferase; structural
genomics, center for structural genomics of infec
diseases, csgid; HET: ACO; 2.35A {Vibrio cholerae o1
biovar eltor} PDB: 3ect_A*
Length = 195
Score = 27.9 bits (63), Expect = 1.8
Identities = 6/30 (20%), Positives = 12/30 (40%), Gaps = 3/30 (10%)
Query: 31 TLLGGVSIIVGCIIGSGIFVS---PAGVLA 57
+ GV+I ++ + V+ P L
Sbjct: 146 VINQGVTIGARSVVAANSVVNQDVPPDTLV 175
>3ftt_A Putative acetyltransferase sacol2570; galactoside
O-acetyltransferase, enzyme, structural genomics,
acyltransferase; 1.60A {Staphylococcus aureus subsp}
PDB: 3v4e_A*
Length = 199
Score = 27.9 bits (63), Expect = 1.8
Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 3/30 (10%)
Query: 31 TLLGGVSIIVGCIIGSGIFVS---PAGVLA 57
+L GV+I G +IG+G V+ P LA
Sbjct: 144 AVLPGVTIGEGSVIGAGSVVTKDIPPHSLA 173
>3srt_A Maltose O-acetyltransferase; structural genomics, the center
structural genomics of infectious diseases, csgid; 2.50A
{Clostridium difficile}
Length = 188
Score = 27.5 bits (62), Expect = 1.9
Identities = 8/30 (26%), Positives = 15/30 (50%), Gaps = 3/30 (10%)
Query: 31 TLLGGVSIIVGCIIGSGIFVS---PAGVLA 57
+ G++I +IG+G V+ P +A
Sbjct: 146 IITPGITIGDNVVIGAGSVVTKDIPPNTVA 175
>2p2o_A Maltose transacetylase; GK1921, GKA001001921.1, geobacillus
kaustophilus structural genomics, PSI; 1.74A
{Geobacillus kaustophilus} PDB: 2ic7_A
Length = 185
Score = 27.5 bits (62), Expect = 2.0
Identities = 9/30 (30%), Positives = 14/30 (46%), Gaps = 3/30 (10%)
Query: 31 TLLGGVSIIVGCIIGSGIFVS---PAGVLA 57
+ GV+I +I SG V+ PA +
Sbjct: 144 VINPGVTIGDNAVIASGAVVTKDVPANAVV 173
>1ocx_A Maltose O-acetyltransferase; LEFT-handed parallel beta-helix; 2.15A
{Escherichia coli} SCOP: b.81.1.3
Length = 182
Score = 27.1 bits (61), Expect = 2.5
Identities = 8/30 (26%), Positives = 14/30 (46%), Gaps = 3/30 (10%)
Query: 31 TLLGGVSIIVGCIIGSGIFVS---PAGVLA 57
+ GV+I ++ SG V+ P V+
Sbjct: 142 VINPGVTIGDNVVVASGAVVTKDVPDNVVV 171
>3hjj_A Maltose O-acetyltransferase; LEFT-handed beta-helix,
acyltransferase, struct genomics; 2.15A {Bacillus
anthracis} PDB: 3igj_A*
Length = 190
Score = 27.1 bits (61), Expect = 2.8
Identities = 10/30 (33%), Positives = 14/30 (46%), Gaps = 3/30 (10%)
Query: 31 TLLGGVSIIVGCIIGSGIFVS---PAGVLA 57
+ GVSI +I SG V+ P V+
Sbjct: 148 IINPGVSIGDNAVIASGAVVTKDVPNNVVV 177
>3fs8_A QDTC; acetyltransferase, natural product, deoxysugar; HET: ACO;
1.70A {Thermoanaerobacteriumthermosaccharolyticum} PDB:
3fsb_A* 3fsc_A*
Length = 273
Score = 27.0 bits (60), Expect = 3.6
Identities = 12/67 (17%), Positives = 23/67 (34%), Gaps = 4/67 (5%)
Query: 34 GGVSIIVGCIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTIGALCYAELGTCISRS 93
V + II +++ P VL + + ++ L + I A G I
Sbjct: 135 SNVFVGEKSIIKDFVWLFPHVVLTNDPTPPSNELLGVTIELFAVIAARSVVLPGIHI--- 191
Query: 94 GGDYAYI 100
+ A +
Sbjct: 192 -NEDALV 197
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl RED
beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
cerevisiae}
Length = 1688
Score = 26.0 bits (57), Expect = 9.6
Identities = 5/11 (45%), Positives = 6/11 (54%)
Query: 38 IIVGCIIGSGI 48
VG GSG+
Sbjct: 1042 SEVGNCSGSGM 1052
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.325 0.140 0.424
Gapped
Lambda K H
0.267 0.0616 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,879,201
Number of extensions: 172837
Number of successful extensions: 565
Number of sequences better than 10.0: 1
Number of HSP's gapped: 558
Number of HSP's successfully gapped: 24
Length of query: 190
Length of database: 6,701,793
Length adjustment: 88
Effective length of query: 102
Effective length of database: 4,244,745
Effective search space: 432963990
Effective search space used: 432963990
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 54 (24.8 bits)