RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy9206
         (190 letters)



>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+
           modules {Escherichia coli [TaxId: 562]}
          Length = 268

 Score = 27.7 bits (61), Expect = 0.76
 Identities = 21/115 (18%), Positives = 36/115 (31%), Gaps = 22/115 (19%)

Query: 73  GLLSTIGALCYAELGTCISRSGGDYAYILVAFGELPAFLRLWVALLIMRPTTQAIVALTF 132
           G +  IG+  Y E      +                A  R +  + I  P+ +  V +  
Sbjct: 146 GKIRVIGSTTYQEFSNIFEKD--------------RALARRFQKIDITEPSIEETVQIIN 191

Query: 133 AQYAIKPFFPDSELPDRAVLLLAAACLCKNGNAIKPFFPDSELPDRAVLLLAAAC 187
                     D     +A  + AA  L         +  D  LPD+A+ ++  A 
Sbjct: 192 GLKPKYEAHHDVRYTAKA--VRAAVELAVK------YINDRHLPDKAIDVIDEAG 238


>d1fvga_ d.58.28.1 (A:) Peptide methionine sulfoxide reductase {Cow
           (Bos taurus) [TaxId: 9913]}
          Length = 192

 Score = 27.4 bits (60), Expect = 0.87
 Identities = 12/31 (38%), Positives = 14/31 (45%)

Query: 142 PDSELPDRAVLLLAAACLCKNGNAIKPFFPD 172
           P   LP R   L+ AA    NGN     FP+
Sbjct: 5   PQEALPGRKEPLVVAAKHHVNGNRTVEPFPE 35


>d1al3a_ c.94.1.1 (A:) Cofactor-binding fragment of LysR-type
           protein CysB {Klebsiella aerogenes [TaxId: 28451]}
          Length = 237

 Score = 26.1 bits (56), Expect = 2.9
 Identities = 6/26 (23%), Positives = 14/26 (53%)

Query: 153 LLAAACLCKNGNAIKPFFPDSELPDR 178
           ++  A   ++   I+  F D +LP++
Sbjct: 212 VVDTAVALRSNEDIEAMFKDIKLPEK 237


>d1chma1 c.55.2.1 (A:2-156) Creatinase {Pseudomonas putida [TaxId:
           303]}
          Length = 155

 Score = 25.6 bits (55), Expect = 3.2
 Identities = 5/18 (27%), Positives = 10/18 (55%)

Query: 161 KNGNAIKPFFPDSELPDR 178
           +NG+ ++  F   E  +R
Sbjct: 9   RNGDKVRSTFSAQEYANR 26


>d1ssqa_ b.81.1.6 (A:) Serine acetyltransferase {Haemophilus
           influenzae [TaxId: 727]}
          Length = 241

 Score = 25.5 bits (55), Expect = 4.6
 Identities = 7/30 (23%), Positives = 11/30 (36%), Gaps = 3/30 (10%)

Query: 31  TLLGGVSIIVGCIIGSGIFVS---PAGVLA 57
            +LG + +     IG+   V    P    A
Sbjct: 203 KILGNIEVGKYAKIGANSVVLNPVPEYATA 232


>d5ruba2 d.58.9.1 (A:2-137) Ribulose 1,5-bisphosphate
           carboxylase-oxygenase {Rhodospirillum rubrum [TaxId:
           1085]}
          Length = 136

 Score = 24.3 bits (53), Expect = 7.2
 Identities = 10/53 (18%), Positives = 18/53 (33%), Gaps = 3/53 (5%)

Query: 53  AGVLAETQSVGLSIVIWTVCGLLSTIGALCYA-ELGTCISRSGGDYAYILVAF 104
           A   A   S G ++ + T       + AL Y  +    +++    Y   L   
Sbjct: 41  AAHFAAESSTGTNVEVCTTDDFTRGVDALVYEVDEARELTKIA--YPVALFDR 91


>d1iwea_ c.37.1.10 (A:) Adenylosuccinate synthetase, PurA {Mouse
           (Mus musculus) [TaxId: 10090]}
          Length = 430

 Score = 25.1 bits (54), Expect = 7.6
 Identities = 6/36 (16%), Positives = 14/36 (38%)

Query: 42  CIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLST 77
             IG+G+ +   G+  E +      +      L+ +
Sbjct: 69  SFIGNGVVIHLPGLFEEAEKNEKKGLKDWEKRLIIS 104


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.325    0.140    0.424 

Gapped
Lambda     K      H
   0.267   0.0659    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 674,642
Number of extensions: 29876
Number of successful extensions: 131
Number of sequences better than 10.0: 1
Number of HSP's gapped: 131
Number of HSP's successfully gapped: 12
Length of query: 190
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 110
Effective length of database: 1,309,196
Effective search space: 144011560
Effective search space used: 144011560
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 50 (23.2 bits)