BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9207
(125 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q6GQA6|CSN8_XENLA COP9 signalosome complex subunit 8 OS=Xenopus laevis GN=csn8 PE=2
SV=2
Length = 195
Score = 94.0 bits (232), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 49/127 (38%), Positives = 77/127 (60%), Gaps = 3/127 (2%)
Query: 2 SHPEIGQVWEVGKHLWNGNYPSIYSTLKR-TWSDDIAHIMKALQDEVQKRAISLISKAYS 60
SH E+G +WEVG+ +W ++P IY+++ WS++I IM+A++D Q+RA L+S+AY+
Sbjct: 69 SHSELGGIWEVGQKIWQRDFPGIYTSISAYQWSENIQQIMEAVRDATQQRAFGLVSQAYT 128
Query: 61 SIPNTSLSEFLGVTEQEAAAIAQAEGWTVDKVYTQPV-KKPEEYATPNITDD-QLYILTQ 118
SI + F+G+ +EA +GW D + KKP+ I ++ QL LT
Sbjct: 129 SISADDFAAFVGLPVEEAVKGVLEQGWQADSATGMVMPKKPDSAPLSLIPNEQQLARLTD 188
Query: 119 YVSFLEN 125
YV+FLEN
Sbjct: 189 YVAFLEN 195
>sp|Q6P637|CSN8_XENTR COP9 signalosome complex subunit 8 OS=Xenopus tropicalis GN=csn8
PE=2 SV=1
Length = 193
Score = 90.5 bits (223), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 48/128 (37%), Positives = 80/128 (62%), Gaps = 5/128 (3%)
Query: 2 SHPEIGQVWEVGKHLWNGNYPSIYSTLKRT-WSDDIAHIMKALQDEVQKRAISLISKAYS 60
+H E+G +WEVG+ +W ++P IY+++ WS+ I +M+A++D ++RA L+S+AY+
Sbjct: 67 AHSELGGIWEVGQKIWQRDFPGIYTSISACQWSEAIQPVMEAVRDATRRRAFGLVSQAYT 126
Query: 61 SIPNTSLSEFLGVTEQEAAAIAQAEGWTVDKVYTQPV--KKPEEYATPNITDD-QLYILT 117
SI + F+G++ +EA +GW D + T+ V KKP+ I ++ QL LT
Sbjct: 127 SISADDFAAFVGLSVEEAVKGVIEQGWQAD-LATRMVMPKKPDSAPLSLIPNEQQLARLT 185
Query: 118 QYVSFLEN 125
YV+FLEN
Sbjct: 186 DYVAFLEN 193
>sp|Q7ZUZ0|CSN8_DANRE COP9 signalosome complex subunit 8 OS=Danio rerio GN=cops8 PE=2
SV=1
Length = 191
Score = 84.3 bits (207), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 44/129 (34%), Positives = 72/129 (55%), Gaps = 7/129 (5%)
Query: 2 SHPEIGQVWEVGKHLWNGNYPSIYSTLKR-TWSDDIAHIMKALQDEVQKRAISLISKAYS 60
++PE+ +W VG+ +W ++P IYS + WS+ I +M+AL++ ++RA L+++AY+
Sbjct: 65 ANPEMAAIWAVGQRIWQRDFPGIYSAIAAYQWSESILPVMEALRESTRRRAYGLVAQAYT 124
Query: 61 SIPNTSLSEFLGVTEQEAAAIAQAEGWTVDK----VYTQPVKKPEEYATPNITDDQLYIL 116
SI + F+G + +EA + GW D + Q P PN + QL L
Sbjct: 125 SISAEDFAAFVGYSVEEAVKGVVSHGWQADPNTRMIMPQKPDPPPVSLVPN--EQQLARL 182
Query: 117 TQYVSFLEN 125
T YV+FLEN
Sbjct: 183 TDYVAFLEN 191
>sp|Q6P4Z9|CSN8_RAT COP9 signalosome complex subunit 8 OS=Rattus norvegicus GN=Cops8
PE=2 SV=1
Length = 209
Score = 82.4 bits (202), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 47/140 (33%), Positives = 75/140 (53%), Gaps = 19/140 (13%)
Query: 5 EIGQVWEVGKHLWNGNYPSIYSTLK-RTWSDDIAHIMKALQDEVQKRAISLISKAYSSIP 63
E+G +W VG+ +W ++P IY+T+ WS+ + IM+AL+D ++RA +L+S+AY+SI
Sbjct: 70 ELGGIWSVGQRIWQRDFPGIYTTINAHQWSETVQPIMEALRDATRRRAFALVSQAYTSII 129
Query: 64 NTSLSEFLGVTEQEAAAIAQAEGWTVDKVYTQPV-KKP----------------EEYATP 106
+ F+G+ +EA +GW D + +KP E P
Sbjct: 130 ADDFAAFVGLPVEEAVKGVLEQGWQADSTTRMVLPRKPAPGALDVSLNRFIPLSEPAPVP 189
Query: 107 NITDD-QLYILTQYVSFLEN 125
I ++ QL LT YV+FLEN
Sbjct: 190 PIPNEQQLARLTDYVAFLEN 209
>sp|Q8VBV7|CSN8_MOUSE COP9 signalosome complex subunit 8 OS=Mus musculus GN=Cops8 PE=1
SV=1
Length = 209
Score = 82.4 bits (202), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 47/143 (32%), Positives = 77/143 (53%), Gaps = 19/143 (13%)
Query: 2 SHPEIGQVWEVGKHLWNGNYPSIYSTLK-RTWSDDIAHIMKALQDEVQKRAISLISKAYS 60
++ E+G +W VG+ +W ++P IY+T+ WS+ + IM+AL+D ++RA +L+S+AY+
Sbjct: 67 ANSELGGIWSVGQRIWQRDFPGIYTTINAHQWSETVQPIMEALRDATRRRAFALVSQAYT 126
Query: 61 SIPNTSLSEFLGVTEQEAAAIAQAEGWTVDKVYTQPV-KKP----------------EEY 103
SI + F+G+ +EA +GW D + +KP E
Sbjct: 127 SIIADDFAAFVGLPVEEAVKGVLEQGWQADSTTRMVLPRKPASGTLDVSLNRFIPLSEPA 186
Query: 104 ATPNITDD-QLYILTQYVSFLEN 125
P I ++ QL LT YV+FLEN
Sbjct: 187 PVPPIPNEQQLARLTDYVAFLEN 209
>sp|Q5RF54|CSN8_PONAB COP9 signalosome complex subunit 8 OS=Pongo abelii GN=COPS8 PE=2
SV=1
Length = 209
Score = 82.0 bits (201), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 47/140 (33%), Positives = 75/140 (53%), Gaps = 19/140 (13%)
Query: 5 EIGQVWEVGKHLWNGNYPSIYSTLK-RTWSDDIAHIMKALQDEVQKRAISLISKAYSSIP 63
E+G +W VG+ +W ++P IY+T+ WS+ + IM+AL+D ++RA +L+S+AY+SI
Sbjct: 70 ELGGIWSVGQRIWQRDFPGIYTTINAHQWSETVQPIMEALRDATRRRAFALVSQAYTSIV 129
Query: 64 NTSLSEFLGVTEQEAAAIAQAEGWTVDKVYTQPV-KKP----------------EEYATP 106
+ F+G+ +EA +GW D + +KP E P
Sbjct: 130 ADDFAAFVGLPVEEAVKGILEQGWQADSTTRMVLPRKPVAGALDVSFNKFIPLSEPAPVP 189
Query: 107 NITDD-QLYILTQYVSFLEN 125
I ++ QL LT YV+FLEN
Sbjct: 190 PIPNEQQLARLTDYVAFLEN 209
>sp|Q99627|CSN8_HUMAN COP9 signalosome complex subunit 8 OS=Homo sapiens GN=COPS8 PE=1
SV=1
Length = 209
Score = 81.6 bits (200), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 47/140 (33%), Positives = 75/140 (53%), Gaps = 19/140 (13%)
Query: 5 EIGQVWEVGKHLWNGNYPSIYSTLK-RTWSDDIAHIMKALQDEVQKRAISLISKAYSSIP 63
E+G +W VG+ +W ++P IY+T+ WS+ + IM+AL+D ++RA +L+S+AY+SI
Sbjct: 70 ELGGIWSVGQRIWQRDFPGIYTTINAHQWSETVQPIMEALRDATRRRAFALVSQAYTSII 129
Query: 64 NTSLSEFLGVTEQEAAAIAQAEGWTVDKVYTQPV-KKP----------------EEYATP 106
+ F+G+ +EA +GW D + +KP E P
Sbjct: 130 ADDFAAFVGLPVEEAVKGILEQGWQADSTTRMVLPRKPVAGALDVSFNKFIPLSEPAPVP 189
Query: 107 NITDD-QLYILTQYVSFLEN 125
I ++ QL LT YV+FLEN
Sbjct: 190 PIPNEQQLARLTDYVAFLEN 209
>sp|P43255|CSN8_ARATH COP9 signalosome complex subunit 8 OS=Arabidopsis thaliana GN=CSN8
PE=1 SV=1
Length = 197
Score = 69.3 bits (168), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 41/124 (33%), Positives = 60/124 (48%), Gaps = 2/124 (1%)
Query: 4 PEIGQVWEVGKHLWNGNYPSIYSTLK-RTWSDDIAHIMKALQDEVQKRAISLISKAYSSI 62
PE+ W +G+ LW +Y +Y ++ WS + ++ A D KR L+ AYS+I
Sbjct: 74 PEVVAAWGIGQKLWTHDYAGVYEAIRGYDWSQEAKDMVAAFSDLYTKRMFQLLLSAYSTI 133
Query: 63 PNTSLSEFLGVTEQEAAAIAQAEGWTVDKVYTQP-VKKPEEYATPNITDDQLYILTQYVS 121
L+ FLG+TE +A GWTVD VKK + +L LT+YV
Sbjct: 134 TIHDLALFLGMTEDDATTYVVENGWTVDAASQMASVKKQAVKREQKVDSSKLQRLTEYVF 193
Query: 122 FLEN 125
LE+
Sbjct: 194 HLEH 197
>sp|Q75K24|CSN8_DICDI COP9 signalosome complex subunit 8 OS=Dictyostelium discoideum
GN=csn8 PE=1 SV=1
Length = 196
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/128 (29%), Positives = 61/128 (47%), Gaps = 8/128 (6%)
Query: 2 SHPEIGQVWEVGKHLWNGNYPSIYSTLKRTWSDDIAHIMKALQDEVQKRAISLISKAYSS 61
S+ ++ ++ + K + N Y++L DD + L++ Q+R LIS AYSS
Sbjct: 69 SNQQLKNIYTIIKSISQTNPTITYTSLSINIGDDYTPFITTLKENFQQRTFELISNAYSS 128
Query: 62 IPNTSLSEFLGVTEQEAAAIAQAEGWTVDKVYT--QPV---KKPEEYATPNITDDQLYIL 116
I S +LG++ ++ ++ W DK +PV K+ E T N Q+ L
Sbjct: 129 ITVNDCSSYLGISPEDTIKFTTSKCWEHDKASNTLKPVPIQKQSSELPTGN---QQIRSL 185
Query: 117 TQYVSFLE 124
T YV FLE
Sbjct: 186 TSYVLFLE 193
>sp|Q7KTH8|CSN8_DROME COP9 signalosome complex subunit 8 OS=Drosophila melanogaster
GN=CSN8 PE=1 SV=1
Length = 182
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 61/125 (48%), Gaps = 6/125 (4%)
Query: 5 EIGQVWEVGKHLWNGNYPSIYSTLKRTWSDDIAHIMKALQDEVQKRAISLISKAYSSIPN 64
E+ Q+ + L N NY + +K WS+ + ++ L ++ ++ L+ AY SI
Sbjct: 60 ELIQLNLLNIALQNNNYADFFKHIKYEWSERVKSPVEDLLNKQREELFKLMGSAYMSIYQ 119
Query: 65 TSLSEFLGVTEQEAAAIAQAEGWTV----DKVYTQPVKKPEEYATPNITDDQLYILTQYV 120
+L E ++E E A WT D+V +P K +E DDQL LT++V
Sbjct: 120 HNLLELSLMSEDELKHACAALNWTEELDGDRVILKP--KVQEAPPARGNDDQLLKLTEFV 177
Query: 121 SFLEN 125
+FLEN
Sbjct: 178 TFLEN 182
>sp|Q9XUP3|EIF3K_CAEEL Eukaryotic translation initiation factor 3 subunit K
OS=Caenorhabditis elegans GN=eif-3.K PE=2 SV=1
Length = 240
Score = 33.1 bits (74), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 22/99 (22%), Positives = 46/99 (46%), Gaps = 16/99 (16%)
Query: 5 EIGQVWEVGKHLWNGNYPSIYSTLKRTWS------------DDIAHIMK---ALQDEVQK 49
E+ +++++G L + N+ + +K + ++ ++K +D V+
Sbjct: 97 ELRRIFDLGAVLESCNFAVFWKLVKGAYKPTTNPNEPFKVPGEVPKMIKPMVGFEDAVKH 156
Query: 50 RAISLISKAYSSIPNTSLSEFLG-VTEQEAAAIAQAEGW 87
A +IS + I LS LG +++E A+AQ+ GW
Sbjct: 157 YACRVISVTFQKIEKKMLSRLLGGASDKEVTALAQSFGW 195
>sp|A7F080|EIF3K_SCLS1 Eukaryotic translation initiation factor 3 subunit K OS=Sclerotinia
sclerotiorum (strain ATCC 18683 / 1980 / Ss-1)
GN=SS1G_10997 PE=3 SV=1
Length = 245
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 41/79 (51%), Gaps = 4/79 (5%)
Query: 16 LWNGNYPSIYSTLKR--TWSDDIAHIMKALQDEVQKRAISLISKAYSSIPNTSLSEFLGV 73
L + NY +STL ++D IA + ++ ++ R S IS++ IP++ L +LG+
Sbjct: 129 LSSANYSQFWSTLDSDDLYADLIADV-SGFEELIRIRIASTISQSVREIPSSELENWLGM 187
Query: 74 T-EQEAAAIAQAEGWTVDK 91
E I + GWT++
Sbjct: 188 NGEAFEKFIKEVCGWTIEN 206
>sp|Q8QZY1|EIF3L_MOUSE Eukaryotic translation initiation factor 3 subunit L OS=Mus
musculus GN=Eif3l PE=1 SV=1
Length = 564
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 25/42 (59%), Gaps = 4/42 (9%)
Query: 40 MKALQDEVQKRA----ISLISKAYSSIPNTSLSEFLGVTEQE 77
+K DEVQ++A I K Y+++P L+ FL +TEQE
Sbjct: 444 LKVFSDEVQQQAQLSTIRSFLKLYTTMPVAKLAGFLDLTEQE 485
>sp|Q3ZCK1|EIF3L_BOVIN Eukaryotic translation initiation factor 3 subunit L OS=Bos taurus
GN=EIF3L PE=2 SV=1
Length = 564
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 25/42 (59%), Gaps = 4/42 (9%)
Query: 40 MKALQDEVQKRA----ISLISKAYSSIPNTSLSEFLGVTEQE 77
+K DEVQ++A I K Y+++P L+ FL +TEQE
Sbjct: 444 LKVFSDEVQQQAQLSTIRSFLKLYTTMPVAKLAGFLDLTEQE 485
>sp|Q9Y262|EIF3L_HUMAN Eukaryotic translation initiation factor 3 subunit L OS=Homo
sapiens GN=EIF3L PE=1 SV=1
Length = 564
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 25/42 (59%), Gaps = 4/42 (9%)
Query: 40 MKALQDEVQKRA----ISLISKAYSSIPNTSLSEFLGVTEQE 77
+K DEVQ++A I K Y+++P L+ FL +TEQE
Sbjct: 444 LKVFSDEVQQQAQLSTIRSFLKLYTTMPVAKLAGFLDLTEQE 485
>sp|A5A6M4|EIF3L_PANTR Eukaryotic translation initiation factor 3 subunit L OS=Pan
troglodytes GN=EIF3L PE=2 SV=1
Length = 564
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 25/42 (59%), Gaps = 4/42 (9%)
Query: 40 MKALQDEVQKRA----ISLISKAYSSIPNTSLSEFLGVTEQE 77
+K DEVQ++A I K Y+++P L+ FL +TEQE
Sbjct: 444 LKVFSDEVQQQAQLSTIRSFLKLYTTMPVAKLAGFLDLTEQE 485
>sp|Q5F428|EIF3L_CHICK Eukaryotic translation initiation factor 3 subunit L OS=Gallus
gallus GN=EIF3L PE=2 SV=1
Length = 564
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 25/42 (59%), Gaps = 4/42 (9%)
Query: 40 MKALQDEVQKRA----ISLISKAYSSIPNTSLSEFLGVTEQE 77
+K DEVQ++A I K Y+++P L+ FL +TEQE
Sbjct: 444 LKVFADEVQQQAQLSTIRSFLKLYTTMPVAKLAGFLDLTEQE 485
>sp|Q8QGX4|PRKDC_CHICK DNA-dependent protein kinase catalytic subunit OS=Gallus gallus
GN=PRKDC PE=2 SV=1
Length = 4134
Score = 30.4 bits (67), Expect = 3.0, Method: Composition-based stats.
Identities = 21/54 (38%), Positives = 27/54 (50%), Gaps = 4/54 (7%)
Query: 22 PSIYSTLKRTWSDDIAHIMKALQDEVQKRAISLISKAYSSIPNTSLSEFL-GVT 74
P +Y LK S D IMK DE Q+ + +I K S++ L E L GVT
Sbjct: 2408 PDLYLQLK---SKDFIQIMKHRDDERQRVCLDIIYKMLSTLKPPELKELLPGVT 2458
>sp|Q605G9|PANC_METCA Pantothenate synthetase OS=Methylococcus capsulatus (strain ATCC
33009 / NCIMB 11132 / Bath) GN=panC PE=3 SV=1
Length = 286
Score = 30.4 bits (67), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 26/42 (61%), Gaps = 3/42 (7%)
Query: 75 EQEAAAIAQAEGWTVDKVYTQPVKKPEEYATPNITDDQLYIL 116
EQEA+A +A G++VD V +++ ++ A P+ D L IL
Sbjct: 226 EQEASATLEAGGFSVDYVS---IRRQQDLAAPSADDSALVIL 264
>sp|P50524|RPN12_SCHPO 26S proteasome regulatory subunit rpn12 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=rpn12 PE=1 SV=1
Length = 270
Score = 30.0 bits (66), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 17/87 (19%), Positives = 40/87 (45%), Gaps = 1/87 (1%)
Query: 4 PEIGQVWEVGKHLWNGNYPSIYSTLKRTWSDDIAHIMKALQDEVQKRAISLISKAYSSIP 63
P + V + +++ G + + S ++ + ++ MK + V+ + K YS IP
Sbjct: 128 PYVEWVISLEQNVMEGAFDKVASMIRSCNFPEFSYFMKIVMSMVRNEIATCAEKVYSEIP 187
Query: 64 NTSLSEFLGV-TEQEAAAIAQAEGWTV 89
++ + L + +E +A+ GW +
Sbjct: 188 LSNATSLLYLENTKETEKLAEERGWDI 214
>sp|C0QBV4|RS6_DESAH 30S ribosomal protein S6 OS=Desulfobacterium autotrophicum (strain
ATCC 43914 / DSM 3382 / HRM2) GN=rpsF PE=3 SV=1
Length = 155
Score = 29.6 bits (65), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 19/41 (46%)
Query: 60 SSIPNTSLSEFLGVTEQEAAAIAQAEGWTVDKVYTQPVKKP 100
+ NT F G+ EQE +A + W K+ + KKP
Sbjct: 16 DEVRNTLFDRFKGILEQEGGILANFDDWGNKKLAYEIAKKP 56
>sp|Q9HFR4|ATG2_PICPA Autophagy-related protein 2 OS=Komagataella pastoris GN=ATG2 PE=3
SV=1
Length = 1862
Score = 29.6 bits (65), Expect = 5.0, Method: Composition-based stats.
Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
Query: 59 YSSIPNTSLSEFLGVTEQEAAAIAQAEGWTVDKVYTQPVKK--PEEYATPNITDDQL 113
Y+ I + SEF+ + A+I +GWT V EY TP+IT +QL
Sbjct: 1516 YAGIRSGKTSEFMNFFILDEASIGLRKGWTWIGGLNNQVNSHTKREYGTPDITRNQL 1572
>sp|Q9CCF8|PNP_MYCLE Polyribonucleotide nucleotidyltransferase OS=Mycobacterium leprae
(strain TN) GN=pnp PE=3 SV=1
Length = 773
Score = 29.3 bits (64), Expect = 7.8, Method: Composition-based stats.
Identities = 22/81 (27%), Positives = 39/81 (48%), Gaps = 3/81 (3%)
Query: 35 DIAHIMKALQDEVQKRAISLISKAYSSIPNTSLSEFLGVTEQEAAAIAQAEGWTVDKVYT 94
D+A +M ++ E + I L+ + + +++ L V + AA+ A+ D V +
Sbjct: 205 DVAIMM--VEAEATENVIELVECGAQAPTESIVAQGLEVAKPFIAALCTAQQELADVVSS 262
Query: 95 QPVKKPEEYAT-PNITDDQLY 114
+ K P EY T P+ DD Y
Sbjct: 263 RQAKPPVEYPTFPDYGDDVYY 283
>sp|B8ZQJ6|PNP_MYCLB Polyribonucleotide nucleotidyltransferase OS=Mycobacterium leprae
(strain Br4923) GN=pnp PE=3 SV=1
Length = 773
Score = 29.3 bits (64), Expect = 7.8, Method: Composition-based stats.
Identities = 22/81 (27%), Positives = 39/81 (48%), Gaps = 3/81 (3%)
Query: 35 DIAHIMKALQDEVQKRAISLISKAYSSIPNTSLSEFLGVTEQEAAAIAQAEGWTVDKVYT 94
D+A +M ++ E + I L+ + + +++ L V + AA+ A+ D V +
Sbjct: 205 DVAIMM--VEAEATENVIELVECGAQAPTESIVAQGLEVAKPFIAALCTAQQELADVVSS 262
Query: 95 QPVKKPEEYAT-PNITDDQLY 114
+ K P EY T P+ DD Y
Sbjct: 263 RQAKPPVEYPTFPDYGDDVYY 283
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.312 0.128 0.378
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 47,809,535
Number of Sequences: 539616
Number of extensions: 1692569
Number of successful extensions: 4046
Number of sequences better than 100.0: 44
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 31
Number of HSP's that attempted gapping in prelim test: 4013
Number of HSP's gapped (non-prelim): 44
length of query: 125
length of database: 191,569,459
effective HSP length: 92
effective length of query: 33
effective length of database: 141,924,787
effective search space: 4683517971
effective search space used: 4683517971
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 55 (25.8 bits)