Query psy9207
Match_columns 125
No_of_seqs 100 out of 209
Neff 7.5
Searched_HMMs 29240
Date Fri Aug 16 21:39:01 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9207.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/9207hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1rz4_A Eukaryotic translation 99.9 1.9E-25 6.6E-30 166.6 7.7 121 2-124 95-220 (226)
2 4b0z_A RPN12, 26S proteasome r 99.9 3.3E-21 1.1E-25 143.7 11.2 96 2-97 131-228 (229)
3 4b4t_T 26S proteasome regulato 99.8 4.1E-20 1.4E-24 141.1 12.4 98 2-99 138-239 (274)
4 3t5v_A Nuclear mRNA export pro 99.0 3.9E-09 1.3E-13 81.8 10.7 89 2-90 145-254 (316)
5 3txn_A 26S proteasome regulato 98.3 1.2E-05 3.9E-10 64.0 11.6 119 2-121 252-384 (394)
6 4b4t_R RPN7, 26S proteasome re 97.9 4.3E-05 1.5E-09 60.7 7.7 99 3-101 283-395 (429)
7 1ufm_A COP9 complex subunit 4; 97.4 0.00013 4.5E-09 46.0 3.9 58 42-99 11-76 (84)
8 4b4t_P 26S proteasome regulato 97.0 0.0035 1.2E-07 50.0 9.2 96 4-100 291-406 (445)
9 4b4t_Q 26S proteasome regulato 96.7 0.028 9.5E-07 42.5 11.8 82 3-84 293-379 (434)
10 4b4t_O 26S proteasome regulato 96.0 0.026 9E-07 44.3 8.1 82 3-84 245-330 (393)
11 4b4t_S RPN3, 26S proteasome re 94.1 0.014 4.8E-07 47.9 1.2 75 6-80 342-421 (523)
12 2heo_A Z-DNA binding protein 1 90.0 0.83 2.8E-05 26.7 5.2 44 46-89 10-56 (67)
13 3t5x_A PCI domain-containing p 88.6 0.8 2.7E-05 32.7 5.2 76 9-84 83-170 (203)
14 2oqg_A Possible transcriptiona 87.3 1.6 5.5E-05 27.2 5.6 54 34-89 9-65 (114)
15 3cuo_A Uncharacterized HTH-typ 87.2 1.8 6.3E-05 26.1 5.7 55 34-89 12-69 (99)
16 3jth_A Transcription activator 87.1 1.2 4E-05 27.3 4.8 54 34-89 11-67 (98)
17 3pqk_A Biofilm growth-associat 85.9 2.4 8.1E-05 26.1 5.8 54 34-89 11-67 (102)
18 1y6u_A XIS, excisionase from t 85.5 1.4 4.9E-05 26.2 4.3 36 61-96 16-56 (70)
19 2kko_A Possible transcriptiona 85.5 1 3.6E-05 28.4 4.0 54 34-89 13-69 (108)
20 1u2w_A CADC repressor, cadmium 84.9 5.8 0.0002 25.4 7.7 56 33-89 29-87 (122)
21 3e21_A HFAF1, FAS-associated f 84.8 0.47 1.6E-05 26.1 1.7 27 64-90 9-36 (45)
22 1y0u_A Arsenical resistance op 84.7 2.8 9.7E-05 25.5 5.7 53 35-90 20-75 (96)
23 3f6o_A Probable transcriptiona 84.2 2.1 7.1E-05 27.3 5.0 54 34-89 6-62 (118)
24 1r1u_A CZRA, repressor protein 84.2 2.5 8.7E-05 26.3 5.3 54 34-89 14-70 (106)
25 3dkw_A DNR protein; CRP-FNR, H 83.7 8.3 0.00028 26.3 9.1 56 44-99 150-221 (227)
26 2lkp_A Transcriptional regulat 83.5 3.7 0.00013 25.9 6.0 53 35-89 21-76 (119)
27 2htj_A P fimbrial regulatory p 83.2 2.2 7.4E-05 25.4 4.5 41 48-89 2-45 (81)
28 1r1t_A Transcriptional repress 82.3 3.5 0.00012 26.6 5.6 54 34-89 34-90 (122)
29 2zkz_A Transcriptional repress 81.5 5 0.00017 24.7 5.9 51 33-84 14-64 (99)
30 1ub9_A Hypothetical protein PH 78.9 8.1 0.00028 23.0 6.5 48 41-89 11-61 (100)
31 3lsg_A Two-component response 78.7 6.1 0.00021 24.2 5.6 42 48-89 4-48 (103)
32 2k9s_A Arabinose operon regula 77.1 5.4 0.00018 24.7 5.0 41 49-89 6-49 (107)
33 1nd9_A Translation initiation 76.7 2 6.8E-05 23.0 2.5 27 61-87 2-28 (49)
34 2lju_A Putative oxidoreductase 75.7 2.8 9.5E-05 27.3 3.4 17 74-90 68-84 (108)
35 1ng7_A Poliovirus 3A-N, genome 74.8 1.4 4.7E-05 25.8 1.5 16 74-89 30-45 (60)
36 3iwz_A CAP-like, catabolite ac 74.0 18 0.00062 24.6 8.4 52 45-96 158-227 (230)
37 2elj_A Transcriptional adapter 73.6 13 0.00044 22.9 6.0 42 46-87 43-87 (88)
38 2gmg_A Hypothetical protein PF 73.3 3.1 0.00011 26.9 3.1 31 45-77 10-43 (105)
39 2jt1_A PEFI protein; solution 72.6 8.8 0.0003 23.1 4.9 42 47-89 5-55 (77)
40 1uly_A Hypothetical protein PH 72.4 9.9 0.00034 26.6 5.9 50 38-89 12-64 (192)
41 3mn2_A Probable ARAC family tr 71.7 9.2 0.00031 23.5 5.1 40 50-89 6-47 (108)
42 2jya_A AGR_C_3324P, uncharacte 71.5 3.1 0.0001 27.0 2.8 16 74-89 60-75 (106)
43 2jsc_A Transcriptional regulat 71.2 4 0.00014 26.0 3.4 54 34-89 9-65 (118)
44 3oou_A LIN2118 protein; protei 70.7 9.8 0.00033 23.4 5.1 40 50-89 9-50 (108)
45 2krk_A 26S protease regulatory 70.3 5.3 0.00018 24.3 3.6 39 46-84 14-56 (86)
46 3oio_A Transcriptional regulat 70.2 8.2 0.00028 24.0 4.7 40 50-89 11-52 (113)
47 3mkl_A HTH-type transcriptiona 67.7 5.8 0.0002 25.1 3.6 43 47-89 8-51 (120)
48 1z96_A DNA-damage, UBA-domain 67.5 5 0.00017 20.5 2.7 26 64-90 8-33 (40)
49 3dv8_A Transcriptional regulat 67.3 13 0.00045 25.1 5.6 51 46-96 147-209 (220)
50 2fmy_A COOA, carbon monoxide o 67.0 25 0.00087 23.8 7.1 45 45-89 137-198 (220)
51 2oz6_A Virulence factor regula 66.9 25 0.00086 23.4 7.2 36 61-96 164-204 (207)
52 2kfs_A Conserved hypothetical 66.7 6.9 0.00023 26.8 3.9 40 60-99 30-72 (148)
53 4ham_A LMO2241 protein; struct 66.7 17 0.00059 23.5 5.9 53 38-90 14-70 (134)
54 2hzt_A Putative HTH-type trans 65.9 12 0.0004 23.2 4.7 52 36-89 4-59 (107)
55 1v92_A NSFL1 cofactor P47; 3-h 64.9 8.2 0.00028 20.4 3.3 27 64-90 9-35 (46)
56 3to7_A Histone acetyltransfera 64.9 13 0.00044 28.0 5.3 54 43-96 190-245 (276)
57 3aji_B S6C, proteasome (prosom 64.7 10 0.00035 22.4 4.1 40 46-85 4-47 (83)
58 1q1h_A TFE, transcription fact 64.6 5.5 0.00019 24.7 2.9 56 34-89 6-64 (110)
59 2pjp_A Selenocysteine-specific 64.2 25 0.00085 22.4 6.6 42 48-90 68-112 (121)
60 3t5v_B Nuclear mRNA export pro 64.2 8.1 0.00028 30.9 4.5 70 4-73 293-374 (455)
61 3gbg_A TCP pilus virulence reg 64.1 13 0.00044 26.6 5.2 41 49-89 172-213 (276)
62 4ev0_A Transcription regulator 63.1 28 0.00096 23.3 6.7 53 44-96 139-203 (216)
63 1bl0_A Protein (multiple antib 62.9 16 0.00054 23.3 5.0 40 49-88 14-55 (129)
64 3fx3_A Cyclic nucleotide-bindi 62.8 34 0.0011 23.4 7.2 50 47-96 154-217 (237)
65 3f6v_A Possible transcriptiona 62.2 8.9 0.0003 25.7 3.8 50 38-89 50-102 (151)
66 1qbj_A Protein (double-strande 61.5 24 0.00081 21.2 5.7 44 45-89 9-58 (81)
67 2o3f_A Putative HTH-type trans 61.4 13 0.00046 23.5 4.4 28 61-88 39-66 (111)
68 1cv8_A Staphopain; cysteine pr 61.3 13 0.00044 26.1 4.5 51 39-90 32-82 (174)
69 2p4w_A Transcriptional regulat 61.1 29 0.001 24.3 6.6 53 35-89 4-59 (202)
70 1sfx_A Conserved hypothetical 61.0 23 0.0008 21.0 5.7 44 45-89 19-65 (109)
71 2d1h_A ST1889, 109AA long hypo 59.8 25 0.00085 20.9 5.4 41 49-89 24-67 (109)
72 2lnb_A Z-DNA-binding protein 1 59.5 27 0.00094 21.3 5.5 40 45-84 18-57 (80)
73 3chm_A COP9 signalosome comple 59.2 40 0.0014 23.1 9.1 71 8-83 61-132 (169)
74 2hr3_A Probable transcriptiona 59.0 31 0.0011 21.7 7.3 42 48-89 37-81 (147)
75 1oyi_A Double-stranded RNA-bin 56.2 18 0.00063 22.1 4.1 42 46-89 17-61 (82)
76 2pq8_A Probable histone acetyl 56.1 11 0.00039 28.3 3.7 49 47-95 194-244 (278)
77 1jr3_D DNA polymerase III, del 56.0 25 0.00086 26.0 5.8 80 8-89 213-295 (343)
78 2cg4_A Regulatory protein ASNC 55.6 21 0.00073 23.3 4.8 44 45-89 7-53 (152)
79 2ou2_A Histone acetyltransfera 55.3 17 0.00059 27.4 4.6 37 60-96 211-249 (280)
80 2cfx_A HTH-type transcriptiona 54.3 24 0.00083 22.8 4.9 43 46-89 5-50 (144)
81 2dbb_A Putative HTH-type trans 54.1 23 0.0008 23.0 4.8 44 45-89 8-54 (151)
82 3rkx_A Biotin-[acetyl-COA-carb 53.6 38 0.0013 25.5 6.4 45 46-90 3-51 (323)
83 1g2h_A Transcriptional regulat 52.9 28 0.00096 19.4 4.4 36 48-86 23-58 (61)
84 1je8_A Nitrate/nitrite respons 52.8 33 0.0011 20.1 5.3 20 59-78 34-53 (82)
85 1j9i_A GPNU1 DBD;, terminase s 52.7 8 0.00027 22.1 2.0 23 62-84 3-25 (68)
86 1ft9_A Carbon monoxide oxidati 52.0 52 0.0018 22.2 7.2 45 44-88 132-193 (222)
87 1zyb_A Transcription regulator 52.0 53 0.0018 22.4 6.6 51 46-96 163-226 (232)
88 2cyy_A Putative HTH-type trans 51.5 28 0.00094 22.7 4.8 42 46-88 7-51 (151)
89 1z7u_A Hypothetical protein EF 51.2 20 0.00069 22.3 3.9 52 36-89 12-67 (112)
90 2zcw_A TTHA1359, transcription 50.6 52 0.0018 21.8 6.4 52 45-96 117-186 (202)
91 1u8b_A ADA polyprotein; protei 49.3 40 0.0014 21.4 5.2 39 45-84 78-116 (133)
92 2fi0_A Conserved domain protei 49.2 26 0.00088 20.9 4.0 30 60-89 48-77 (81)
93 2oa4_A SIR5; structure, struct 49.1 38 0.0013 21.5 4.9 35 50-84 39-73 (101)
94 3iwf_A Transcription regulator 49.0 18 0.00062 22.9 3.4 29 60-88 34-62 (107)
95 2gxg_A 146AA long hypothetical 48.6 40 0.0014 21.1 5.2 40 48-89 39-81 (146)
96 3ryp_A Catabolite gene activat 48.3 57 0.0019 21.6 7.7 29 61-89 167-198 (210)
97 1xn7_A Hypothetical protein YH 48.2 41 0.0014 20.0 5.1 30 50-80 6-35 (78)
98 3d0s_A Transcriptional regulat 48.0 61 0.0021 21.8 7.1 36 61-96 177-217 (227)
99 3tqn_A Transcriptional regulat 47.8 48 0.0016 20.6 5.4 49 41-89 12-64 (113)
100 2fbh_A Transcriptional regulat 47.7 49 0.0017 20.6 5.5 40 50-89 41-83 (146)
101 2w25_A Probable transcriptiona 47.7 36 0.0012 22.0 4.9 44 45-89 6-52 (150)
102 2cuj_A Transcriptional adaptor 47.7 52 0.0018 21.0 5.7 41 47-88 62-105 (108)
103 2fsw_A PG_0823 protein; alpha- 47.6 31 0.0011 21.1 4.4 53 35-89 14-70 (107)
104 1yyv_A Putative transcriptiona 47.3 48 0.0016 21.4 5.4 53 35-89 24-80 (131)
105 2ia0_A Putative HTH-type trans 47.2 33 0.0011 23.1 4.8 44 45-89 16-62 (171)
106 2k02_A Ferrous iron transport 46.3 43 0.0015 20.5 4.7 37 50-87 6-45 (87)
107 1jko_C HIN recombinase, DNA-in 46.1 25 0.00087 17.8 3.3 35 49-86 12-46 (52)
108 2pn6_A ST1022, 150AA long hypo 45.9 33 0.0011 22.2 4.5 44 45-89 2-48 (150)
109 3deu_A Transcriptional regulat 45.4 38 0.0013 22.2 4.8 41 49-89 56-99 (166)
110 1tc3_C Protein (TC3 transposas 45.4 28 0.00096 17.2 5.0 35 46-83 9-43 (51)
111 3e97_A Transcriptional regulat 45.2 68 0.0023 21.6 7.1 36 61-96 175-215 (231)
112 3e7l_A Transcriptional regulat 45.0 39 0.0013 18.8 5.6 42 45-88 18-59 (63)
113 1ku9_A Hypothetical protein MJ 44.8 49 0.0017 20.6 5.2 42 48-89 28-72 (152)
114 3oop_A LIN2960 protein; protei 44.4 47 0.0016 20.8 5.0 39 50-89 41-82 (143)
115 3by6_A Predicted transcription 44.3 32 0.0011 22.1 4.1 51 40-90 13-67 (126)
116 2aqe_A Transcriptional adaptor 44.1 36 0.0012 20.9 4.1 40 48-88 45-87 (90)
117 2p5v_A Transcriptional regulat 44.0 45 0.0015 21.9 5.0 44 45-89 9-55 (162)
118 2zp2_A Kinase A inhibitor; KIP 43.9 20 0.00069 24.2 3.1 30 61-90 14-43 (141)
119 4a0z_A Transcription factor FA 43.9 56 0.0019 22.7 5.6 37 40-77 6-42 (190)
120 2dzn_B 26S protease regulatory 43.8 8 0.00027 23.0 1.0 37 48-84 3-43 (82)
121 2e1c_A Putative HTH-type trans 43.6 41 0.0014 22.7 4.8 43 45-88 26-71 (171)
122 3kp7_A Transcriptional regulat 43.4 33 0.0011 21.8 4.2 39 49-89 41-82 (151)
123 2ccq_A P97, peptide N-glycanas 43.1 59 0.002 20.3 5.3 76 34-120 16-95 (99)
124 1z4h_A TORI, TOR inhibition pr 42.8 25 0.00085 19.9 3.1 24 61-84 10-33 (66)
125 1eto_A FIS, factor for inversi 42.7 58 0.002 20.1 7.3 51 31-86 46-96 (98)
126 2gau_A Transcriptional regulat 42.4 65 0.0022 21.8 5.8 52 45-96 151-220 (232)
127 2ao9_A Phage protein; structur 42.2 45 0.0015 22.8 4.7 40 44-83 25-70 (155)
128 2ek5_A Predicted transcription 41.7 59 0.002 20.9 5.2 49 41-89 7-59 (129)
129 1pxv_A Cysteine protease; hydr 41.7 23 0.00078 25.0 3.2 40 50-90 52-91 (183)
130 3e11_A Predicted zincin-like m 41.6 16 0.00056 23.6 2.3 20 64-87 95-114 (114)
131 3la7_A Global nitrogen regulat 41.4 84 0.0029 21.6 7.9 38 61-98 193-235 (243)
132 2dal_A Protein KIAA0794; FAS a 41.4 26 0.00088 20.0 2.9 27 64-90 19-45 (62)
133 2ozu_A Histone acetyltransfera 40.8 47 0.0016 25.0 5.0 43 47-89 199-242 (284)
134 2bgc_A PRFA; bacterial infecti 40.2 87 0.003 21.4 6.4 36 61-96 169-210 (238)
135 3mml_B Allophanate hydrolase s 40.0 30 0.001 25.1 3.8 34 57-90 109-142 (228)
136 2y75_A HTH-type transcriptiona 39.9 68 0.0023 20.1 5.3 40 50-89 13-57 (129)
137 2xvc_A ESCRT-III, SSO0910; cel 39.7 53 0.0018 18.8 4.6 35 49-83 13-47 (59)
138 2rnj_A Response regulator prot 39.6 49 0.0017 19.5 4.3 22 59-80 42-63 (91)
139 2lc0_A Putative uncharacterize 39.4 27 0.00091 23.1 3.2 32 61-92 65-103 (132)
140 2qvo_A Uncharacterized protein 39.4 44 0.0015 19.9 4.0 28 62-89 31-61 (95)
141 1j5y_A Transcriptional regulat 39.3 78 0.0027 21.4 5.8 33 46-78 21-53 (187)
142 2kzc_A Uncharacterized protein 39.1 25 0.00086 21.7 2.8 18 67-84 18-35 (85)
143 3fm5_A Transcriptional regulat 39.1 55 0.0019 20.7 4.7 40 50-89 43-85 (150)
144 2dzl_A Protein FAM100B; UBA-li 38.9 29 0.00098 20.1 2.9 27 64-90 21-47 (66)
145 2l0k_A Stage III sporulation p 38.9 34 0.0012 21.2 3.4 34 47-82 8-41 (93)
146 2qlz_A Transcription factor PF 38.7 17 0.00058 26.3 2.2 49 39-89 5-56 (232)
147 1fse_A GERE; helix-turn-helix 38.7 50 0.0017 18.2 5.3 20 59-78 24-43 (74)
148 3neu_A LIN1836 protein; struct 38.4 75 0.0026 20.1 5.3 51 39-89 14-68 (125)
149 1wj7_A Hypothetical protein (R 38.3 32 0.0011 22.1 3.2 27 64-90 43-69 (104)
150 3ulq_B Transcriptional regulat 38.2 55 0.0019 19.7 4.3 19 60-78 43-61 (90)
151 2hs5_A Putative transcriptiona 38.1 1E+02 0.0035 21.6 7.3 51 39-89 29-82 (239)
152 3i4p_A Transcriptional regulat 38.1 47 0.0016 22.0 4.4 41 46-87 3-46 (162)
153 1r8d_A Transcription activator 38.0 65 0.0022 19.9 4.8 22 62-83 3-24 (109)
154 3kcc_A Catabolite gene activat 37.9 81 0.0028 22.0 5.8 29 61-89 217-248 (260)
155 2yru_A Steroid receptor RNA ac 37.7 52 0.0018 21.3 4.3 45 2-47 58-106 (118)
156 4aik_A Transcriptional regulat 37.1 73 0.0025 20.6 5.1 40 50-89 35-77 (151)
157 3nau_A Zinc fingers and homeob 37.0 34 0.0012 20.0 3.0 22 64-85 34-55 (66)
158 3b73_A PHIH1 repressor-like pr 37.0 54 0.0019 20.8 4.3 44 45-89 12-60 (111)
159 3e6c_C CPRK, cyclic nucleotide 36.9 1E+02 0.0034 21.2 6.4 36 61-96 177-217 (250)
160 3sxy_A Transcriptional regulat 36.8 75 0.0026 21.8 5.4 51 39-89 13-66 (218)
161 3hug_A RNA polymerase sigma fa 36.7 65 0.0022 19.0 5.4 22 58-79 50-71 (92)
162 2fa5_A Transcriptional regulat 36.7 81 0.0028 20.1 5.6 39 50-89 53-94 (162)
163 3b02_A Transcriptional regulat 36.5 90 0.0031 20.5 5.9 52 45-96 110-179 (195)
164 2hin_A GP39, repressor protein 36.3 41 0.0014 19.7 3.4 22 63-84 12-33 (71)
165 3gp4_A Transcriptional regulat 36.3 90 0.0031 20.4 5.7 51 61-120 2-53 (142)
166 2oie_A RS21-C6; helix, hydrola 35.9 78 0.0027 19.6 5.1 30 45-80 75-104 (111)
167 3s2w_A Transcriptional regulat 35.5 68 0.0023 20.5 4.8 38 51-89 55-95 (159)
168 2a61_A Transcriptional regulat 35.3 80 0.0027 19.6 5.1 39 50-89 37-78 (145)
169 1i1g_A Transcriptional regulat 35.1 52 0.0018 20.8 4.1 42 47-89 5-49 (141)
170 3boq_A Transcriptional regulat 34.8 48 0.0016 21.2 3.9 42 48-89 49-93 (160)
171 4hbl_A Transcriptional regulat 34.7 65 0.0022 20.4 4.5 39 50-89 45-86 (149)
172 2vz4_A Tipal, HTH-type transcr 34.3 66 0.0023 19.8 4.4 22 62-83 2-23 (108)
173 3eet_A Putative GNTR-family tr 34.2 95 0.0032 22.5 5.8 51 39-89 30-84 (272)
174 2k9l_A RNA polymerase sigma fa 34.2 48 0.0016 19.4 3.5 27 56-82 43-69 (76)
175 3te3_A Polycystic kidney disea 33.2 19 0.00064 19.0 1.3 17 109-125 5-21 (39)
176 2a3q_A Hypothetical protein; M 33.1 1.2E+02 0.004 20.8 5.9 31 45-81 90-120 (170)
177 3c57_A Two component transcrip 33.0 45 0.0016 20.0 3.3 40 38-81 23-62 (95)
178 1ify_A HHR23A, UV excision rep 32.9 41 0.0014 18.1 2.7 19 72-90 19-37 (49)
179 1s3j_A YUSO protein; structura 32.8 68 0.0023 20.2 4.4 39 50-89 41-82 (155)
180 1p4w_A RCSB; solution structur 32.6 76 0.0026 19.4 4.4 16 60-75 48-63 (99)
181 3bdd_A Regulatory protein MARR 32.5 88 0.003 19.2 5.4 40 49-89 34-76 (142)
182 2jpc_A SSRB; DNA binding prote 32.3 60 0.0021 17.2 4.5 18 59-76 11-28 (61)
183 3f2g_A Alkylmercury lyase; MER 32.2 1.4E+02 0.0048 21.4 6.3 43 47-90 23-66 (220)
184 3bpv_A Transcriptional regulat 32.2 89 0.003 19.1 5.5 39 50-89 33-74 (138)
185 3lwj_A Putative TETR-family tr 32.2 1E+02 0.0035 19.8 5.6 22 54-75 25-46 (202)
186 3kp1_E D-ornithine aminomutase 32.1 1.1E+02 0.0037 20.1 6.8 32 55-86 40-75 (121)
187 1xmk_A Double-stranded RNA-spe 31.8 84 0.0029 18.7 4.5 43 46-89 11-57 (79)
188 3cjd_A Transcriptional regulat 31.8 74 0.0025 20.9 4.6 22 54-75 25-46 (198)
189 1uxc_A FRUR (1-57), fructose r 31.6 55 0.0019 18.6 3.3 23 62-84 1-23 (65)
190 3tgn_A ADC operon repressor AD 31.4 89 0.003 19.4 4.7 40 48-89 40-82 (146)
191 2phc_B Uncharacterized protein 31.1 41 0.0014 24.3 3.2 85 6-90 24-126 (225)
192 2ns0_A Hypothetical protein; r 30.9 75 0.0026 19.5 4.0 29 45-73 6-36 (85)
193 2nyx_A Probable transcriptiona 30.8 98 0.0034 20.0 5.0 39 50-89 49-90 (168)
194 3hh0_A Transcriptional regulat 30.7 90 0.0031 20.5 4.8 51 61-120 4-55 (146)
195 1pb6_A Hypothetical transcript 30.6 1.1E+02 0.0038 19.8 5.6 33 54-86 31-73 (212)
196 1r7j_A Conserved hypothetical 30.5 93 0.0032 18.8 4.7 37 50-89 12-51 (95)
197 2dam_A ETEA protein; KIAA0887, 30.5 44 0.0015 19.3 2.8 27 64-90 22-49 (67)
198 2rdp_A Putative transcriptiona 30.2 1E+02 0.0035 19.2 5.4 39 50-89 46-87 (150)
199 1qgp_A Protein (double strande 30.0 85 0.0029 18.3 6.1 44 46-89 14-62 (77)
200 3nqo_A MARR-family transcripti 30.0 93 0.0032 20.8 4.9 42 48-89 43-88 (189)
201 3ech_A MEXR, multidrug resista 29.6 1E+02 0.0035 19.1 4.8 39 50-89 41-82 (142)
202 2z15_A Protein TOB1; human TOB 29.4 74 0.0025 21.0 4.0 64 31-95 27-108 (130)
203 1umq_A Photosynthetic apparatu 29.3 95 0.0032 18.5 5.3 37 48-86 43-79 (81)
204 3k0l_A Repressor protein; heli 29.2 93 0.0032 20.0 4.6 39 50-89 50-91 (162)
205 3col_A Putative transcription 28.9 95 0.0032 19.7 4.6 30 55-84 24-63 (196)
206 3cwr_A Transcriptional regulat 28.9 1.2E+02 0.004 19.5 5.2 21 55-75 31-51 (208)
207 3vp5_A Transcriptional regulat 28.8 60 0.002 21.2 3.7 22 54-75 25-46 (189)
208 2jml_A DNA binding domain/tran 28.7 50 0.0017 19.2 2.9 53 61-121 5-58 (81)
209 3kz9_A SMCR; transcriptional r 28.6 66 0.0023 20.7 3.8 22 54-75 30-51 (206)
210 3ihu_A Transcriptional regulat 28.5 1.4E+02 0.0049 20.4 6.9 51 39-89 17-70 (222)
211 1x19_A CRTF-related protein; m 28.5 1.2E+02 0.004 22.4 5.6 47 41-89 46-95 (359)
212 3df8_A Possible HXLR family tr 28.4 71 0.0024 19.7 3.8 55 35-89 16-74 (111)
213 3clo_A Transcriptional regulat 28.1 1.1E+02 0.0036 21.7 5.1 33 41-77 196-228 (258)
214 3jw4_A Transcriptional regulat 28.1 85 0.0029 19.7 4.2 40 50-89 45-88 (148)
215 3bni_A Putative TETR-family tr 27.6 1.4E+02 0.0048 20.0 5.7 22 54-75 56-77 (229)
216 2ib1_A Death domain containing 27.6 56 0.0019 20.0 3.0 35 47-83 4-40 (91)
217 3b81_A Transcriptional regulat 27.5 1.2E+02 0.0042 19.4 5.7 22 54-75 24-45 (203)
218 1ntc_A Protein (nitrogen regul 27.5 1E+02 0.0035 18.4 6.0 36 47-84 52-87 (91)
219 2f2e_A PA1607; transcription f 27.5 80 0.0027 20.5 4.0 51 37-89 15-68 (146)
220 2oi8_A Putative regulatory pro 27.4 1E+02 0.0035 20.7 4.8 21 55-75 30-50 (216)
221 3geu_A Intercellular adhesion 27.4 94 0.0032 19.9 4.4 21 55-75 17-37 (189)
222 3qkx_A Uncharacterized HTH-typ 27.4 79 0.0027 20.0 4.0 22 54-75 21-42 (188)
223 2fq4_A Transcriptional regulat 27.3 78 0.0027 20.6 4.0 30 46-75 16-46 (192)
224 3bja_A Transcriptional regulat 27.3 97 0.0033 18.9 4.3 39 50-89 37-78 (139)
225 3anp_C Transcriptional repress 27.0 83 0.0029 20.5 4.1 21 55-75 23-43 (204)
226 2ras_A Transcriptional regulat 27.0 97 0.0033 20.2 4.5 40 47-86 16-66 (212)
227 3qbm_A TETR transcriptional re 26.9 95 0.0033 19.8 4.4 22 54-75 20-41 (199)
228 2r3s_A Uncharacterized protein 26.9 91 0.0031 22.5 4.6 47 41-89 21-70 (335)
229 3lhq_A Acrab operon repressor 26.6 1.3E+02 0.0045 19.4 5.5 21 55-75 28-48 (220)
230 1mkm_A ICLR transcriptional re 26.4 1.2E+02 0.0043 21.3 5.2 40 50-89 12-54 (249)
231 2ip2_A Probable phenazine-spec 26.4 1.3E+02 0.0044 21.8 5.4 47 41-89 23-72 (334)
232 3e6m_A MARR family transcripti 26.4 1.1E+02 0.0039 19.4 4.7 39 50-89 57-98 (161)
233 2nnn_A Probable transcriptiona 26.3 1.2E+02 0.0039 18.6 5.1 39 50-89 42-83 (140)
234 3eco_A MEPR; mutlidrug efflux 26.3 1.2E+02 0.004 18.7 4.8 40 50-89 35-78 (139)
235 2fbi_A Probable transcriptiona 26.2 1.2E+02 0.004 18.6 5.1 39 50-89 40-81 (142)
236 2pex_A Transcriptional regulat 26.2 1.3E+02 0.0043 18.9 5.3 39 50-89 51-92 (153)
237 2d5u_A N-glycanase 1; pngase, 26.1 1.2E+02 0.004 19.8 4.6 74 38-120 35-110 (124)
238 1sgm_A Putative HTH-type trans 26.0 70 0.0024 20.4 3.5 21 54-74 19-39 (191)
239 1d5y_A ROB transcription facto 26.0 99 0.0034 21.9 4.6 41 49-89 6-48 (292)
240 2o7t_A Transcriptional regulat 25.8 1.3E+02 0.0045 19.4 5.0 21 55-75 22-42 (199)
241 3vpr_A Transcriptional regulat 25.8 75 0.0026 20.5 3.7 22 54-75 16-37 (190)
242 1v4r_A Transcriptional repress 25.6 20 0.00069 21.8 0.7 50 40-89 13-66 (102)
243 2hoe_A N-acetylglucosamine kin 25.4 33 0.0011 26.0 2.0 48 41-90 15-65 (380)
244 3kw6_A 26S protease regulatory 25.3 1E+02 0.0035 17.5 4.7 39 46-84 6-48 (78)
245 2x4h_A Hypothetical protein SS 25.1 1.3E+02 0.0044 18.7 5.1 32 58-89 28-62 (139)
246 4gif_A Polycystic kidney disea 25.1 31 0.0011 18.7 1.3 17 109-125 5-21 (45)
247 3c7j_A Transcriptional regulat 25.0 1.8E+02 0.0061 20.3 5.9 47 43-89 31-80 (237)
248 2xi8_A Putative transcription 25.0 74 0.0025 16.7 3.0 24 60-83 13-36 (66)
249 4hku_A LMO2814 protein, TETR t 24.9 64 0.0022 20.9 3.2 32 54-85 20-61 (178)
250 3bj6_A Transcriptional regulat 24.8 1.3E+02 0.0045 18.7 5.3 39 50-89 44-85 (152)
251 2lfc_A Fumarate reductase, fla 24.7 66 0.0023 21.3 3.3 22 62-83 96-117 (160)
252 3f1b_A TETR-like transcription 24.6 1.1E+02 0.0037 19.6 4.3 22 54-75 27-48 (203)
253 1lj9_A Transcriptional regulat 24.6 1.3E+02 0.0044 18.5 5.1 38 51-89 34-74 (144)
254 3hsr_A HTH-type transcriptiona 24.5 69 0.0023 20.0 3.2 39 50-89 40-81 (140)
255 2frh_A SARA, staphylococcal ac 24.3 92 0.0031 19.3 3.8 39 50-89 41-84 (127)
256 3gpv_A Transcriptional regulat 24.2 1.5E+02 0.005 19.5 4.9 51 61-120 16-67 (148)
257 2fu4_A Ferric uptake regulatio 24.2 1.1E+02 0.0036 17.4 4.9 44 46-89 17-69 (83)
258 2hyt_A TETR-family transcripti 24.1 1E+02 0.0036 20.0 4.2 21 55-75 26-46 (197)
259 3cdh_A Transcriptional regulat 24.1 1.2E+02 0.0043 19.0 4.5 39 50-89 47-88 (155)
260 4g6q_A Putative uncharacterize 24.1 80 0.0027 21.4 3.6 52 35-88 12-67 (182)
261 2jrt_A Uncharacterized protein 24.0 1.3E+02 0.0045 18.4 5.4 35 50-84 38-72 (95)
262 3mq0_A Transcriptional repress 23.9 1.1E+02 0.0039 22.0 4.7 40 50-89 34-76 (275)
263 2l48_A N-acetylmuramoyl-L-alan 23.9 1.3E+02 0.0045 18.4 4.4 45 75-121 32-76 (85)
264 2g7s_A Transcriptional regulat 23.9 1.4E+02 0.0049 18.8 5.2 22 54-75 21-42 (194)
265 1pdn_C Protein (PRD paired); p 23.8 1.2E+02 0.0042 18.1 5.6 37 45-84 20-56 (128)
266 1r69_A Repressor protein CI; g 23.8 73 0.0025 17.0 2.9 24 60-83 13-36 (69)
267 2zb9_A Putative transcriptiona 23.8 95 0.0032 20.4 4.0 22 54-75 36-57 (214)
268 3i53_A O-methyltransferase; CO 23.7 1.7E+02 0.0057 21.2 5.6 47 41-89 20-69 (332)
269 2wv0_A YVOA, HTH-type transcri 23.7 1.9E+02 0.0065 20.3 5.7 50 41-90 13-66 (243)
270 3omt_A Uncharacterized protein 23.6 74 0.0025 17.5 2.9 23 61-83 21-43 (73)
271 3bwg_A Uncharacterized HTH-typ 23.5 1.5E+02 0.0053 20.7 5.2 50 41-90 8-61 (239)
272 2eh3_A Transcriptional regulat 23.4 90 0.0031 19.9 3.7 22 54-75 15-36 (179)
273 2jj7_A Hemolysin II regulatory 23.3 94 0.0032 19.8 3.8 33 54-86 20-62 (186)
274 1qzz_A RDMB, aclacinomycin-10- 23.3 1.8E+02 0.0061 21.3 5.8 47 41-89 31-80 (374)
275 3bro_A Transcriptional regulat 23.2 1.4E+02 0.0046 18.3 5.7 40 50-89 38-81 (141)
276 1jgs_A Multiple antibiotic res 23.2 1.4E+02 0.0046 18.3 5.1 38 51-89 39-79 (138)
277 4b8x_A SCO5413, possible MARR- 23.2 1.1E+02 0.0039 19.4 4.2 39 51-89 40-82 (147)
278 2dak_A Ubiquitin carboxyl-term 23.1 92 0.0032 17.5 3.2 25 65-90 14-38 (63)
279 3crj_A Transcription regulator 23.1 1.3E+02 0.0043 19.7 4.5 22 54-75 27-48 (199)
280 2g3q_A Protein YBL047C; endocy 23.1 46 0.0016 17.1 1.7 25 65-90 9-33 (43)
281 1x9y_A Cysteine proteinase; ha 23.1 68 0.0023 25.0 3.3 41 49-90 227-267 (367)
282 2p5k_A Arginine repressor; DNA 23.1 96 0.0033 16.5 5.4 42 47-88 5-51 (64)
283 1vmg_A Hypothetical protein SS 23.0 1.4E+02 0.0047 18.4 4.2 32 44-81 60-91 (95)
284 1whz_A Hypothetical protein; a 23.0 66 0.0022 18.2 2.6 18 73-90 5-22 (70)
285 3r0a_A Putative transcriptiona 23.0 1.4E+02 0.005 18.6 5.5 44 46-89 26-73 (123)
286 1q06_A Transcriptional regulat 23.0 1.5E+02 0.0052 19.0 4.7 48 63-119 2-50 (135)
287 4a6d_A Hydroxyindole O-methylt 22.9 2.1E+02 0.0073 21.1 6.1 48 41-88 23-73 (353)
288 3knw_A Putative transcriptiona 22.8 1.1E+02 0.0036 19.9 4.0 22 54-75 27-48 (212)
289 3edp_A LIN2111 protein; APC883 22.8 1.3E+02 0.0044 21.2 4.6 50 41-90 12-65 (236)
290 3boe_A Cadmium-specific carbon 22.8 50 0.0017 23.3 2.3 17 73-89 2-18 (210)
291 2r1j_L Repressor protein C2; p 22.7 84 0.0029 16.6 3.0 23 61-83 18-40 (68)
292 3u2r_A Regulatory protein MARR 22.7 95 0.0033 20.0 3.7 40 50-89 50-93 (168)
293 1on2_A Transcriptional regulat 22.7 1.5E+02 0.005 18.5 5.1 31 59-89 20-53 (142)
294 3bru_A Regulatory protein, TET 22.6 1.4E+02 0.0047 19.5 4.6 21 55-75 44-64 (222)
295 1wi9_A Protein C20ORF116 homol 22.6 91 0.0031 18.5 3.1 41 59-99 19-67 (72)
296 3nxc_A HTH-type protein SLMA; 22.5 93 0.0032 20.2 3.7 31 45-75 27-59 (212)
297 3dcf_A Transcriptional regulat 22.4 1.5E+02 0.0051 19.1 4.8 22 54-75 44-65 (218)
298 2p58_C Putative type III secre 22.4 1.6E+02 0.0056 18.9 4.7 38 4-41 39-76 (116)
299 1rkt_A Protein YFIR; transcrip 22.4 1.2E+02 0.0039 19.9 4.2 22 54-75 25-46 (205)
300 3pas_A TETR family transcripti 22.2 81 0.0028 20.0 3.3 22 54-75 21-42 (195)
301 2ibd_A Possible transcriptiona 22.2 1.2E+02 0.004 19.8 4.2 21 55-75 28-48 (204)
302 1tw3_A COMT, carminomycin 4-O- 22.1 1.6E+02 0.0055 21.5 5.3 47 41-89 34-83 (360)
303 3rd3_A Probable transcriptiona 22.0 99 0.0034 19.7 3.7 22 54-75 23-44 (197)
304 2qib_A TETR-family transcripti 21.9 1.6E+02 0.0056 19.7 5.0 21 55-75 27-47 (231)
305 3e7q_A Transcriptional regulat 21.9 83 0.0028 20.4 3.3 21 55-75 28-48 (215)
306 1x2m_A LAG1 longevity assuranc 21.8 80 0.0027 18.1 2.8 22 64-85 31-52 (64)
307 3bjx_A Halocarboxylic acid deh 21.8 1.2E+02 0.0041 23.1 4.4 78 3-80 182-272 (311)
308 2fd5_A Transcriptional regulat 21.8 1.4E+02 0.0047 18.9 4.4 22 54-75 20-41 (180)
309 2elh_A CG11849-PA, LD40883P; s 21.7 1.3E+02 0.0044 17.5 5.6 36 46-84 26-61 (87)
310 1z05_A Transcriptional regulat 21.7 2.5E+02 0.0084 21.4 6.4 47 43-90 36-85 (429)
311 3g3z_A NMB1585, transcriptiona 21.6 1.5E+02 0.0052 18.3 5.3 39 50-89 35-76 (145)
312 2xrn_A HTH-type transcriptiona 21.5 1.3E+02 0.0043 21.2 4.4 40 50-89 10-52 (241)
313 3cjn_A Transcriptional regulat 21.4 1.6E+02 0.0056 18.6 5.3 39 50-89 56-97 (162)
314 1zx4_A P1 PARB, plasmid partit 21.4 2.1E+02 0.0073 19.9 5.9 42 60-101 23-64 (192)
315 3bhq_A Transcriptional regulat 21.4 1.4E+02 0.0046 19.6 4.4 22 54-75 25-46 (211)
316 2xdn_A HTH-type transcriptiona 21.4 1.3E+02 0.0043 19.7 4.2 22 54-75 24-45 (210)
317 3vlf_B 26S protease regulatory 21.3 1.4E+02 0.0047 17.6 4.7 37 48-84 6-46 (88)
318 3ccy_A Putative TETR-family tr 21.3 86 0.0029 20.5 3.3 31 54-84 27-67 (203)
319 3mvp_A TETR/ACRR transcription 21.1 1.2E+02 0.0042 19.6 4.1 22 54-75 39-60 (217)
320 1ngr_A P75 low affinity neurot 21.0 61 0.0021 19.5 2.2 33 47-83 11-43 (85)
321 3dew_A Transcriptional regulat 21.0 72 0.0025 20.5 2.8 22 54-75 21-42 (206)
322 2b0l_A GTP-sensing transcripti 21.0 69 0.0024 19.7 2.6 42 47-89 29-74 (102)
323 2uwj_G Type III export protein 21.0 1.5E+02 0.0052 19.1 4.1 38 4-41 38-75 (115)
324 2h09_A Transcriptional regulat 21.0 1.7E+02 0.0058 18.6 7.9 44 45-89 39-85 (155)
325 2w53_A Repressor, SMet; antibi 20.8 1.8E+02 0.0061 19.1 4.9 22 54-75 24-45 (219)
326 3him_A Probable transcriptiona 20.8 99 0.0034 19.9 3.5 31 55-85 30-70 (211)
327 2qtq_A Transcriptional regulat 20.7 1.5E+02 0.0051 19.1 4.4 21 55-75 30-50 (213)
328 3ppb_A Putative TETR family tr 20.6 1.7E+02 0.0058 18.4 5.7 21 55-75 23-43 (195)
329 3qk9_A Mitochondrial import in 20.6 1.2E+02 0.004 21.8 4.0 73 18-94 58-135 (222)
330 3dpj_A Transcription regulator 20.6 1.5E+02 0.0051 18.9 4.4 22 54-75 21-42 (194)
331 3qqa_A CMER; alpha-helical, he 20.6 1.2E+02 0.0041 19.7 3.9 41 45-85 22-73 (216)
332 2hyj_A Putative TETR-family tr 20.5 1.3E+02 0.0044 19.7 4.1 22 54-75 25-46 (200)
333 3e8t_A Takeout 1, takeout-like 20.4 1.3E+02 0.0045 20.8 4.3 42 26-67 176-217 (220)
334 2v79_A DNA replication protein 20.4 1E+02 0.0036 20.0 3.5 34 55-88 45-81 (135)
335 1adr_A P22 C2 repressor; trans 20.4 97 0.0033 16.8 3.0 23 61-83 18-40 (76)
336 4fe7_A Xylose operon regulator 20.4 1.6E+02 0.0053 22.1 4.9 36 53-88 312-349 (412)
337 1zug_A Phage 434 CRO protein; 20.3 1.1E+02 0.0037 16.3 3.2 24 60-83 15-38 (71)
338 1zs4_A Regulatory protein CII; 20.3 1.3E+02 0.0044 18.3 3.6 19 60-78 23-41 (83)
339 1x3u_A Transcriptional regulat 20.3 1.2E+02 0.0043 16.8 6.3 43 34-80 8-50 (79)
340 1tbx_A ORF F-93, hypothetical 20.3 1.4E+02 0.0048 17.4 4.4 39 50-89 12-57 (99)
341 3on2_A Probable transcriptiona 20.2 82 0.0028 20.1 3.0 21 55-75 26-46 (199)
342 2wui_A MEXZ, transcriptional r 20.2 1.6E+02 0.0054 19.3 4.5 21 55-75 25-45 (210)
343 1z6r_A MLC protein; transcript 20.2 2.2E+02 0.0076 21.3 5.8 47 43-90 13-62 (406)
344 3vib_A MTRR; helix-turn-helix 20.1 1.4E+02 0.0046 19.5 4.1 22 54-75 23-44 (210)
345 3kkc_A TETR family transcripti 20.1 68 0.0023 20.3 2.5 20 56-75 27-46 (177)
346 2ev1_A Hypothetical protein RV 20.1 2.1E+02 0.0071 20.6 5.2 28 62-89 79-106 (222)
347 2yve_A Transcriptional regulat 20.1 97 0.0033 20.0 3.3 22 54-75 17-38 (185)
No 1
>1rz4_A Eukaryotic translation initiation factor 3 subuni; heat analogous motif, winged-helix, biosynthetic protein; 2.10A {Homo sapiens} SCOP: a.4.5.53 a.118.1.18
Probab=99.92 E-value=1.9e-25 Score=166.57 Aligned_cols=121 Identities=20% Similarity=0.298 Sum_probs=102.7
Q ss_pred CchHHHHHHHHHHHHHcCCchHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHhC-CCHHHHHH
Q psy9207 2 SHPEIGQVWEVGKHLWNGNYPSIYSTLKRTWSDDIAHIMKALQDEVQKRAISLISKAYSSIPNTSLSEFLG-VTEQEAAA 80 (125)
Q Consensus 2 ~~~~l~~~~~l~~~l~~~~y~~v~~~~~~~~s~~~~~~i~~l~~~vR~~~~~li~~AY~sI~~~~~a~~Lg-l~~~e~~~ 80 (125)
++|+|+.+|.|+++||+|+|++||++++.. ..+...|..|.+++|.+|+.|+++||++|+++.+++||| ++++++.+
T Consensus 95 ~~~~I~~i~~L~~~L~~~~y~~fW~~l~~~--~~l~~~i~gf~dsIR~~I~~~i~~aY~sI~~~~la~lLg~~s~~el~~ 172 (226)
T 1rz4_A 95 EERPIRQILYLGDLLETCHFQAFWQALDEN--MDLLEGITGFEDSVRKFICHVVGITYQHIDRWLLAEMLGDLSDSQLKV 172 (226)
T ss_dssp TSTTHHHHHHHHHHHHTTCHHHHHHHSCTT--CHHHHTSTTHHHHHHHHHHHHHHHHCSEECHHHHHHHTTSCCHHHHHH
T ss_pred cCHHHHHHHHHHHHHHcCCHHHHHHHHhcC--hhHHHHHhHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHcCCCHHHHHH
Confidence 589999999999999999999999999875 468888999999999999999999999999999999995 78999999
Q ss_pred HHHhcCCeec-CceeeccCCCCCCCCCCC-ChHHHHHHhhHH--Hhhc
Q psy9207 81 IAQAEGWTVD-KVYTQPVKKPEEYATPNI-TDDQLYILTQYV--SFLE 124 (125)
Q Consensus 81 ~~~~~GW~~d-~~~~~p~~~~~~~~~~~~-~~~ql~~Lt~~v--~fLE 124 (125)
|++++||++| ++.++|.++++...++.+ +...++++++++ ++||
T Consensus 173 fi~~~GW~vd~~g~I~~~n~e~~~k~~~~~E~i~~~~~~~~~~~~~~~ 220 (226)
T 1rz4_A 173 WMSKYGWSADESGQIFICSQEESIKPKNIVEKIDFDSVSSIMASSQLE 220 (226)
T ss_dssp HHHHHTCEECC--CEECCCHHHHTSCCCSSCCCCHHHHHHHHCC----
T ss_pred HHHHCCCEECCCccEEeCCCcccccceeeeecccHHHHHHHHHHHHHh
Confidence 9999999997 445577666664455555 889999999988 4444
No 2
>4b0z_A RPN12, 26S proteasome regulatory subunit RPN12; protein binding, proteasome ubitquitin; HET: SGM GOL; 1.58A {Schizosaccharomyces pombe}
Probab=99.85 E-value=3.3e-21 Score=143.72 Aligned_cols=96 Identities=20% Similarity=0.363 Sum_probs=89.8
Q ss_pred CchHHHHHHHHHHHHHcCCchHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHhCCC-HHHHHH
Q psy9207 2 SHPEIGQVWEVGKHLWNGNYPSIYSTLKRTWSDDIAHIMKALQDEVQKRAISLISKAYSSIPNTSLSEFLGVT-EQEAAA 80 (125)
Q Consensus 2 ~~~~l~~~~~l~~~l~~~~y~~v~~~~~~~~s~~~~~~i~~l~~~vR~~~~~li~~AY~sI~~~~~a~~Lgl~-~~e~~~ 80 (125)
.||.|+.+++|.+++++|+|.+||+.+++.+++.+..+|..|.+++|.++++||++||.+|++++++++|||+ ++|+.+
T Consensus 131 ~~~~I~~al~l~~al~~GnY~kff~l~~~~p~~~~~~~~~~l~~~vR~~~l~~i~kaY~~i~l~~~~~~L~f~s~~e~~~ 210 (229)
T 4b0z_A 131 RDPYVEWVISLEQNVMEGAFDKVASMIRSCNFPEFSYFMKIVMSMVRNEIATCAEKVYSEIPLSNATSLLYLENTKETEK 210 (229)
T ss_dssp HCHHHHHHHHHHHHHHTTCHHHHHHHHHTCCCGGGHHHHHHHHHHHHHHHHHHHHHHCSEEEHHHHHHHTTCSSHHHHHH
T ss_pred cCHHHHHHHHHHHHHHcCCHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHhCCCCHHHHHH
Confidence 4799999999999999999999999999988888899999999999999999999999999999999999996 799999
Q ss_pred HHHhcCCeec-Cceeecc
Q psy9207 81 IAQAEGWTVD-KVYTQPV 97 (125)
Q Consensus 81 ~~~~~GW~~d-~~~~~p~ 97 (125)
|+.++||+++ |.++||+
T Consensus 211 f~~~~gw~i~dg~i~F~~ 228 (229)
T 4b0z_A 211 LAEERGWDIRDGVIYFPK 228 (229)
T ss_dssp HHHHHTCEEETTEEECC-
T ss_pred HHHHcCCEEeCCEEecCC
Confidence 9999999997 7677774
No 3
>4b4t_T 26S proteasome regulatory subunit RPN12; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.83 E-value=4.1e-20 Score=141.14 Aligned_cols=98 Identities=12% Similarity=0.237 Sum_probs=88.2
Q ss_pred CchHHHHHHHHHHHHHcCCchHHHHHhcc--CCcHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHhCCC-HHHH
Q psy9207 2 SHPEIGQVWEVGKHLWNGNYPSIYSTLKR--TWSDDIAHIMKALQDEVQKRAISLISKAYSSIPNTSLSEFLGVT-EQEA 78 (125)
Q Consensus 2 ~~~~l~~~~~l~~~l~~~~y~~v~~~~~~--~~s~~~~~~i~~l~~~vR~~~~~li~~AY~sI~~~~~a~~Lgl~-~~e~ 78 (125)
.||.|+.+.+|.+++++|+|.+||+.++. .++..+..||+.|.+++|.++++|++|||.+|++++++++|||+ ++|+
T Consensus 138 ~d~~Ik~al~le~al~eGnY~kff~l~~~~~~p~~~~~~f~d~l~~~iR~~a~~~i~kaY~~i~l~~~~~~L~F~s~~e~ 217 (274)
T 4b4t_T 138 DDSLLSYPIKLDRWLMEGSYQKAWDLLQSGSQNISEFDSFTDILKSAIRDEIAKNTELSYDFLPLSNIKALLFFNNEKET 217 (274)
T ss_dssp CCHHHHHHHHHHHHHHHTCSHHHHHHHHTCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHCSSCCHHHHHHHHTCCSHHHH
T ss_pred cChHHHHHHHHHHHHHcCCHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHhCCCCHHHH
Confidence 48999999999999999999999998876 46788999999999999999999999999999999999999996 7999
Q ss_pred HHHHHhcCCeec-CceeeccCC
Q psy9207 79 AAIAQAEGWTVD-KVYTQPVKK 99 (125)
Q Consensus 79 ~~~~~~~GW~~d-~~~~~p~~~ 99 (125)
.+|+.++||+++ |++++|...
T Consensus 218 ~~F~~~~gW~~~~~~v~F~~~~ 239 (274)
T 4b4t_T 218 EKFALERNWPIVNSKVYFNNQS 239 (274)
T ss_dssp HHHHHHTTCCCCSSCCCC----
T ss_pred HHHHHHcCCEEeCCEeEECCcc
Confidence 999999999997 777776544
No 4
>3t5v_A Nuclear mRNA export protein SAC3; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=98.98 E-value=3.9e-09 Score=81.84 Aligned_cols=89 Identities=10% Similarity=0.111 Sum_probs=78.8
Q ss_pred CchHHHHHHHHHHHHH---------------cCCchHHHHHhcc-CCcHHHHHHHHHHHHHHHHHHHHHHHHhcC----C
Q psy9207 2 SHPEIGQVWEVGKHLW---------------NGNYPSIYSTLKR-TWSDDIAHIMKALQDEVQKRAISLISKAYS----S 61 (125)
Q Consensus 2 ~~~~l~~~~~l~~~l~---------------~~~y~~v~~~~~~-~~s~~~~~~i~~l~~~vR~~~~~li~~AY~----s 61 (125)
.||.++....+-+++. .|+|.+||+.+++ .-+-....++..+...+|.+++.++.+||. +
T Consensus 145 ~~p~Vq~AL~l~~a~~~~~~~e~~~~~~~~~~gNY~rFFrL~~~~~~pyL~aclle~~~~~vR~~AL~~i~kay~~k~~~ 224 (316)
T 3t5v_A 145 QDKLVQMALCFRRVISNSAYTERGFVKTENCLNFYARFFQLMQSPSLPLLMGFFLQMHLTDIRFYALRALSHTLNKKHKP 224 (316)
T ss_dssp TSHHHHHHHHHHHHHCCTTCCCTTCCCCSSCCCCHHHHHHHHTCTTSCHHHHHHHGGGHHHHHHHHHHHHHHHSCTTCCC
T ss_pred cCHHHHHHHHHHHHHHhcccccccccccccccchHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHHHHHhccCCCC
Confidence 5789999999988875 3899999999997 233455788999999999999999999994 8
Q ss_pred cchHHHHHHhCCC-HHHHHHHHHhcCCeec
Q psy9207 62 IPNTSLSEFLGVT-EQEAAAIAQAEGWTVD 90 (125)
Q Consensus 62 I~~~~~a~~Lgl~-~~e~~~~~~~~GW~~d 90 (125)
++++.++.+|||+ .+|+.+||+..||+++
T Consensus 225 ~pl~~L~~~L~Fds~ee~~~F~~~~gl~~~ 254 (316)
T 3t5v_A 225 IPFIYLENMLLFNNRQEIIEFCNYYSIEII 254 (316)
T ss_dssp EEHHHHHHHTTCSSHHHHHHHHHHTTCCEE
T ss_pred cCHHHHHHHhCCCCHHHHHHHHHHCCCeEe
Confidence 9999999999996 8999999999999995
No 5
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=98.26 E-value=1.2e-05 Score=64.01 Aligned_cols=119 Identities=13% Similarity=0.143 Sum_probs=77.4
Q ss_pred CchHHHHHHHHHHHHHcCCchHHHHHhcc-C--C-cH-HHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHhCCCHH
Q psy9207 2 SHPEIGQVWEVGKHLWNGNYPSIYSTLKR-T--W-SD-DIAHIMKALQDEVQKRAISLISKAYSSIPNTSLSEFLGVTEQ 76 (125)
Q Consensus 2 ~~~~l~~~~~l~~~l~~~~y~~v~~~~~~-~--~-s~-~~~~~i~~l~~~vR~~~~~li~~AY~sI~~~~~a~~Lgl~~~ 76 (125)
.+|++..+-.|.++...|++..|...+.. . . .+ -+.+-+..|...+|++.+.-+.+.|++|+++++|..||++.+
T Consensus 252 ~~pei~~l~~L~~a~~~~dl~~f~~iL~~~~~~l~~D~~l~~h~~~L~~~Ir~~~L~~i~~pYsrIsl~~iA~~l~ls~~ 331 (394)
T 3txn_A 252 SGRDIDAMKSVAEASHKRSLADFQAALKEYKKELAEDVIVQAHLGTLYDTMLEQNLCRIIEPYSRVQVAHVAESIQLPMP 331 (394)
T ss_dssp CSHHHHHHHHHHHHHHTTCHHHHHHHHHHSTTTTTTSHHHHHHHHHHHHHHHHHHHHHHHTTCSEEEHHHHHHHHTCCHH
T ss_pred CCccHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHhHhhceeeHHHHHHHHCcCHH
Confidence 36899999999999999999998887764 2 1 22 345567899999999999999999999999999999999987
Q ss_pred HHHHHHHh-------cCCeec--CceeeccCCCCCCCCCCCChHHHHHHhhHHH
Q psy9207 77 EAAAIAQA-------EGWTVD--KVYTQPVKKPEEYATPNITDDQLYILTQYVS 121 (125)
Q Consensus 77 e~~~~~~~-------~GW~~d--~~~~~p~~~~~~~~~~~~~~~ql~~Lt~~v~ 121 (125)
++...+.+ .| ++| ++++....++..+..-....+.++.++..|.
T Consensus 332 evE~~L~~lI~dg~I~a-~IDq~~giv~~~~~~~r~~~y~~ale~l~~ls~vVd 384 (394)
T 3txn_A 332 QVEKKLSQMILDKKFSG-ILDQGEGVLIVFEETPVDKTYERVLETIQSMGKVVD 384 (394)
T ss_dssp HHHHHHHHHHHTTSSCE-EEETTTTEEEECCC----------------------
T ss_pred HHHHHHHHHHHCCCeeE-EEcCCCCEEEECCCcchhhHHHHHHHHHHHHHHHHH
Confidence 77666443 25 778 5666554444321111225566677776663
No 6
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.85 E-value=4.3e-05 Score=60.73 Aligned_cols=99 Identities=10% Similarity=0.189 Sum_probs=74.0
Q ss_pred chHHHHHHHHHHHHHcCCchHHHHHhcc----CCc--HHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHhCCCHH
Q psy9207 3 HPEIGQVWEVGKHLWNGNYPSIYSTLKR----TWS--DDIAHIMKALQDEVQKRAISLISKAYSSIPNTSLSEFLGVTEQ 76 (125)
Q Consensus 3 ~~~l~~~~~l~~~l~~~~y~~v~~~~~~----~~s--~~~~~~i~~l~~~vR~~~~~li~~AY~sI~~~~~a~~Lgl~~~ 76 (125)
.|++..+-.+...+..++|..++..+.. ... .-+.+-+..|...+|.+.+.-+.+.|++|+++.+|..||++.+
T Consensus 283 ~p~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~d~~l~~h~~~l~~~ir~~~l~q~~~~Ys~I~l~~mA~~l~~s~~ 362 (429)
T 4b4t_R 283 TAALQSISSLTISLYASDYASYFPYLLETYANVLIPCKYLNRHADFFVREMRRKVYAQLLESYKTLSLKSMASAFGVSVA 362 (429)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHSTTTTTCTTSTTTHHHHHHHHHHHHHHHHHHTCSEEEHHHHHHHHTSCHH
T ss_pred ChhHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhccCHHHHHHHHHHHHHHHHHHHHHHhHHhceeeHHHHHHHhCcCHH
Confidence 4788888899999999999999886532 121 2334456789999999999999999999999999999999986
Q ss_pred HHHHH----HHhc--CCeec--CceeeccCCCC
Q psy9207 77 EAAAI----AQAE--GWTVD--KVYTQPVKKPE 101 (125)
Q Consensus 77 e~~~~----~~~~--GW~~d--~~~~~p~~~~~ 101 (125)
++.+. +.+. .=++| ++++.-.+|+.
T Consensus 363 ~~E~~L~~lI~~g~l~akID~~~giv~~~~~d~ 395 (429)
T 4b4t_R 363 FLDNDLGKFIPNKQLNCVIDRVNGIVETNRPDN 395 (429)
T ss_dssp HHHHHHHHHHHHTSSCEEEETTTTEEEECC---
T ss_pred HHHHHHHHHHHcCCeEEEEcCCCCEEEECCCCc
Confidence 65554 4442 33567 66666655554
No 7
>1ufm_A COP9 complex subunit 4; helix-turn-helix, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: a.4.5.47
Probab=97.43 E-value=0.00013 Score=46.01 Aligned_cols=58 Identities=21% Similarity=0.212 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHHHHhcCCcchHHHHHHhCCCHHHHHHHHHhc------CCeec--CceeeccCC
Q psy9207 42 ALQDEVQKRAISLISKAYSSIPNTSLSEFLGVTEQEAAAIAQAE------GWTVD--KVYTQPVKK 99 (125)
Q Consensus 42 ~l~~~vR~~~~~li~~AY~sI~~~~~a~~Lgl~~~e~~~~~~~~------GW~~d--~~~~~p~~~ 99 (125)
.|.+.+.++-++.+++-|++|+++.+|.+||++.+++.+++.+. -=++| .+++...++
T Consensus 11 ~L~~~v~E~nl~~is~~Y~~Isl~~La~ll~ls~~~vE~~ls~mI~~~~l~akIDq~~g~V~f~~~ 76 (84)
T 1ufm_A 11 ILDRAVIEHNLLSASKLYNNITFEELGALLEIPAAKAEKIASQMITEGRMNGFIDQIDGIVHFETR 76 (84)
T ss_dssp CCCHHHHHHHHHHHHHSCSEEEHHHHHHHTTSCHHHHHHHHHHHHHTTSSCEEEETTTTEEEECCS
T ss_pred HHHHHHHHHHHHHHHHhcCeeeHHHHHHHHCcCHHHHHHHHHHHHhCCcEEEEEeCCCCEEEeCCc
Confidence 35677888888899999999999999999999998887775542 22456 555555443
No 8
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.04 E-value=0.0035 Score=50.02 Aligned_cols=96 Identities=20% Similarity=0.216 Sum_probs=65.7
Q ss_pred hHHHHHHHHHHHHHcCCc---hHHHHHhccCCcH--------HHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHhC
Q psy9207 4 PEIGQVWEVGKHLWNGNY---PSIYSTLKRTWSD--------DIAHIMKALQDEVQKRAISLISKAYSSIPNTSLSEFLG 72 (125)
Q Consensus 4 ~~l~~~~~l~~~l~~~~y---~~v~~~~~~~~s~--------~~~~~i~~l~~~vR~~~~~li~~AY~sI~~~~~a~~Lg 72 (125)
+++...-.|.++...++. +.+.........+ ....-+..|..++++.-+.-+++-|++|+++++|..||
T Consensus 291 ~~l~~~~~L~k~f~~~~L~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~L~~~v~ehnl~~i~k~Ys~I~l~~la~lL~ 370 (445)
T 4b4t_P 291 KKLESQESLVKLFTTNELMRWPIVQKTYEPVLNEDDLAFGGEANKHHWEDLQKRVIEHNLRVISEYYSRITLLRLNELLD 370 (445)
T ss_dssp HHHHHHHHHHHHHHHCCSSSHHHHHHHTCSSTTTCCSSCCCSCSSHHHHHHHHHHHHHHHHHHHHHEEEEEHHHHHHHHT
T ss_pred cccHHHHHHHHHHHhchHhhhHHHHHHHHHHhcccchhhhcchhhHHHHHHHHHHHHHHHHHHHHHhceeeHHHHHHHhC
Confidence 455666677777777755 4444444332211 11345678999999999999999999999999999999
Q ss_pred CCHHHHHHHHHh-------cCCeec--CceeeccCCC
Q psy9207 73 VTEQEAAAIAQA-------EGWTVD--KVYTQPVKKP 100 (125)
Q Consensus 73 l~~~e~~~~~~~-------~GW~~d--~~~~~p~~~~ 100 (125)
++.+++..++.+ .| ++| .++|....+.
T Consensus 371 l~~~evE~~ls~mI~~g~i~a-kIDq~~giV~F~~~~ 406 (445)
T 4b4t_P 371 LTESQTETYISDLVNQGIIYA-KVNRPAKIVNFEKPK 406 (445)
T ss_dssp SCHHHHHHHHHHHHHHTSSCC-EEETTTTEEEC----
T ss_pred cCHHHHHHHHHHHHHCCCEEE-EEcCCCCEEEECCCC
Confidence 999888777554 24 667 5565554443
No 9
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.75 E-value=0.028 Score=42.46 Aligned_cols=82 Identities=15% Similarity=0.196 Sum_probs=64.8
Q ss_pred chHHHHHHHHHHHHHcCCchHHHHHhcc-----CCcHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHhCCCHHH
Q psy9207 3 HPEIGQVWEVGKHLWNGNYPSIYSTLKR-----TWSDDIAHIMKALQDEVQKRAISLISKAYSSIPNTSLSEFLGVTEQE 77 (125)
Q Consensus 3 ~~~l~~~~~l~~~l~~~~y~~v~~~~~~-----~~s~~~~~~i~~l~~~vR~~~~~li~~AY~sI~~~~~a~~Lgl~~~e 77 (125)
++++.....+......+++..+-..+.. .-.+.....+..+...+|+..+.-+.+.|++|+++++|..||++.++
T Consensus 293 ~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~y~~i~l~~la~~l~~~~~~ 372 (434)
T 4b4t_Q 293 SRGIDAMKAVAEAYNNRSLLDFNTALKQYEKELMGDELTRSHFNALYDTLLESNLCKIIEPFECVEISHISKIIGLDTQQ 372 (434)
T ss_dssp CHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHTCSHHHHHHHHHHHHHHHHHHHHHHHSSCSCEEHHHHHHHHTCCHHH
T ss_pred chhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHhCcCHHH
Confidence 4667777888888888887776665543 12234566788899999999999999999999999999999999888
Q ss_pred HHHHHHh
Q psy9207 78 AAAIAQA 84 (125)
Q Consensus 78 ~~~~~~~ 84 (125)
+...+.+
T Consensus 373 ~E~~l~~ 379 (434)
T 4b4t_Q 373 VEGKLSQ 379 (434)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7765443
No 10
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.05 E-value=0.026 Score=44.30 Aligned_cols=82 Identities=10% Similarity=0.080 Sum_probs=59.3
Q ss_pred chHHHHHHHHHHHHHcCCchHHHHHhccCC--cHHHHHHHHHHHHHHHHHHHHHH--HHhcCCcchHHHHHHhCCCHHHH
Q psy9207 3 HPEIGQVWEVGKHLWNGNYPSIYSTLKRTW--SDDIAHIMKALQDEVQKRAISLI--SKAYSSIPNTSLSEFLGVTEQEA 78 (125)
Q Consensus 3 ~~~l~~~~~l~~~l~~~~y~~v~~~~~~~~--s~~~~~~i~~l~~~vR~~~~~li--~~AY~sI~~~~~a~~Lgl~~~e~ 78 (125)
+|+...+..|.+.+-.|++..+-+.++..+ .+.+..-...+..++|-..+..+ ++.|.+|+.+.+++.||++.+|+
T Consensus 245 ~~~~~~l~~Ll~~f~~g~~~~f~~~~~~~~~~~~~l~~~~~~l~~kirll~l~~l~~~~~~~~i~f~~ia~~l~i~~~ev 324 (393)
T 4b4t_O 245 DSNYDWLFQLLNALTVGDFDKFDSLIKVQISKIPILAQHESFLRQKICLMTLIETVFVKNIRMLSFEDISKATHLPKDNV 324 (393)
T ss_dssp SSSTTHHHHHHHHHHHTCHHHHHHHCCHHHHHSHHHHHHHHHHHHHHHHHHHHHHHCSSSCCCEEHHHHHHHHTCCHHHH
T ss_pred CCchHHHHHHHHHHhcCCHHHHHHHHHHhhhhCcchhhhHHHHHHHHHHHHHHHHhccCCCCcCcHHHHHHHhCcCHHHH
Confidence 567788899999999999999877655422 23444445555666665544433 25588999999999999999888
Q ss_pred HHHHHh
Q psy9207 79 AAIAQA 84 (125)
Q Consensus 79 ~~~~~~ 84 (125)
..++.+
T Consensus 325 E~lli~ 330 (393)
T 4b4t_O 325 EHLVMR 330 (393)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 777554
No 11
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.11 E-value=0.014 Score=47.91 Aligned_cols=75 Identities=21% Similarity=0.267 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHHcCCchHHHHHhcc---CC-cHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHhCCCH-HHHHH
Q psy9207 6 IGQVWEVGKHLWNGNYPSIYSTLKR---TW-SDDIAHIMKALQDEVQKRAISLISKAYSSIPNTSLSEFLGVTE-QEAAA 80 (125)
Q Consensus 6 l~~~~~l~~~l~~~~y~~v~~~~~~---~~-s~~~~~~i~~l~~~vR~~~~~li~~AY~sI~~~~~a~~Lgl~~-~e~~~ 80 (125)
+..=..|.+++..||..+|-..+.. .| .+....++..+...+.+.-++.++++|++||+.++|..||+++ +++.-
T Consensus 342 L~pY~~Lv~Avr~GdL~~F~~~L~~h~~~F~~Dgty~LI~rLr~~vir~~irkis~~YsrIsL~dIa~kL~L~s~eeaE~ 421 (523)
T 4b4t_S 342 LLPYYHLTKAVKLGDLKKFTSTITKYKQLLLKDDTYQLCVRLRSNVIKTGIRIISLTYKKISLRDICLKLNLDSEQTVEY 421 (523)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHHTTCTHHHHHHHHHHHHHHHHHSCCCSSEECHHHHHHHHHHHHSSCHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHhcceeccCChhHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHhCCCCHHHHHH
Confidence 4455678999999999998888764 22 2334458899999999999999999999999999999999964 33433
No 12
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=90.00 E-value=0.83 Score=26.67 Aligned_cols=44 Identities=9% Similarity=0.130 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHhcCCcchHHHHHHhCCCHHHHHHHHH---hcCCee
Q psy9207 46 EVQKRAISLISKAYSSIPNTSLSEFLGVTEQEAAAIAQ---AEGWTV 89 (125)
Q Consensus 46 ~vR~~~~~li~~AY~sI~~~~~a~~Lgl~~~e~~~~~~---~~GW~~ 89 (125)
..|++|+.++...=..++..++|..||++...+...+. +.|+-.
T Consensus 10 ~~~~~IL~~L~~~~~~~s~~eLA~~lglsr~tv~~~l~~L~~~G~I~ 56 (67)
T 2heo_A 10 NLEQKILQVLSDDGGPVAIFQLVKKCQVPKKTLNQVLYRLKKEDRVS 56 (67)
T ss_dssp HHHHHHHHHHHHHCSCEEHHHHHHHHCSCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHHHcCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCcEe
Confidence 35889999998754579999999999999877665544 468843
No 13
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=88.63 E-value=0.8 Score=32.65 Aligned_cols=76 Identities=14% Similarity=0.109 Sum_probs=47.0
Q ss_pred HHHHHHHHHcCCchHHHHHhcc-C-C--cHHHHHHHHHHHHHHHHHHHHHHHH--hcCCcchHHHHHHhCC------CHH
Q psy9207 9 VWEVGKHLWNGNYPSIYSTLKR-T-W--SDDIAHIMKALQDEVQKRAISLISK--AYSSIPNTSLSEFLGV------TEQ 76 (125)
Q Consensus 9 ~~~l~~~l~~~~y~~v~~~~~~-~-~--s~~~~~~i~~l~~~vR~~~~~li~~--AY~sI~~~~~a~~Lgl------~~~ 76 (125)
-..|.+++..||..+|-++++. . | .+.+-.++..++..+=...++-+.. .|+.|++++++.-|.+ +.+
T Consensus 83 y~~L~~Avr~Gdl~~f~~~l~~~~~~f~~~~~~lll~rlr~~v~r~l~rkv~~~~~~~rI~l~~i~~~l~~~~~~~~~~~ 162 (203)
T 3t5x_A 83 FAEVTRAVSEGNLLLLHEALAKHEAFFIRCGIFLILEKLKIITYRNLFKKVYLLLKTHQLSLDAFLVALKFMQVEDVDID 162 (203)
T ss_dssp GHHHHHHHHHTCHHHHHHHHHHTHHHHHHHTCHHHHHTHHHHHHHHHHHHHHHHHCCSEEEHHHHHHHHHHTTCTTCCHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHhHHHHHHCChHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHhcCCCCCCHH
Confidence 4568899999999999998875 2 1 1111122333333222223332222 6999999999999964 667
Q ss_pred HHHHHHHh
Q psy9207 77 EAAAIAQA 84 (125)
Q Consensus 77 e~~~~~~~ 84 (125)
|+.-.+..
T Consensus 163 evE~ila~ 170 (203)
T 3t5x_A 163 EVQCILAN 170 (203)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 76665443
No 14
>2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP}
Probab=87.34 E-value=1.6 Score=27.20 Aligned_cols=54 Identities=26% Similarity=0.291 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHhCCCHHHHHHH---HHhcCCee
Q psy9207 34 DDIAHIMKALQDEVQKRAISLISKAYSSIPNTSLSEFLGVTEQEAAAI---AQAEGWTV 89 (125)
Q Consensus 34 ~~~~~~i~~l~~~vR~~~~~li~~AY~sI~~~~~a~~Lgl~~~e~~~~---~~~~GW~~ 89 (125)
+.+..+...+.+..|.+|+.++ .-..++..+++..||++..-+-.. ..+.|+..
T Consensus 9 ~~~~~~~~~l~~~~r~~IL~~L--~~~~~~~~ela~~l~is~~tv~~~l~~L~~~gli~ 65 (114)
T 2oqg_A 9 AELASVFAALSDETRWEILTEL--GRADQSASSLATRLPVSRQAIAKHLNALQACGLVE 65 (114)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHH--HHSCBCHHHHHHHSSSCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHhCChHHHHHHHHH--HcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCee
Confidence 4566777888888999999999 346799999999999997555444 45579986
No 15
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}
Probab=87.17 E-value=1.8 Score=26.09 Aligned_cols=55 Identities=15% Similarity=0.255 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHhCCCHHHHHHH---HHhcCCee
Q psy9207 34 DDIAHIMKALQDEVQKRAISLISKAYSSIPNTSLSEFLGVTEQEAAAI---AQAEGWTV 89 (125)
Q Consensus 34 ~~~~~~i~~l~~~vR~~~~~li~~AY~sI~~~~~a~~Lgl~~~e~~~~---~~~~GW~~ 89 (125)
+.+..+...+.+..|.+|+..+.. -..++..+++..||++..-+-.. ..+.|+..
T Consensus 12 ~~~~~~~~~l~~~~~~~il~~l~~-~~~~s~~ela~~l~is~~tvs~~l~~L~~~glv~ 69 (99)
T 3cuo_A 12 EQAAALLKAMSHPKRLLILCMLSG-SPGTSAGELTRITGLSASATSQHLARMRDEGLID 69 (99)
T ss_dssp HHHHHHHHHHCSHHHHHHHHHHTT-CCSEEHHHHHHHHCCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHhCChHHHHHHHHHHh-CCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEE
Confidence 556677788888899999999965 45799999999999997555444 44578876
No 16
>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}
Probab=87.12 E-value=1.2 Score=27.34 Aligned_cols=54 Identities=11% Similarity=0.246 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHhCCCHHHHHHH---HHhcCCee
Q psy9207 34 DDIAHIMKALQDEVQKRAISLISKAYSSIPNTSLSEFLGVTEQEAAAI---AQAEGWTV 89 (125)
Q Consensus 34 ~~~~~~i~~l~~~vR~~~~~li~~AY~sI~~~~~a~~Lgl~~~e~~~~---~~~~GW~~ 89 (125)
+.+..++..|.+..|.+|+..+.. ..++..+++..||++..-+-.. ..+.|+..
T Consensus 11 ~~~~~~~~~l~~~~r~~Il~~L~~--~~~~~~ela~~l~is~~tvs~~L~~L~~~Glv~ 67 (98)
T 3jth_A 11 AKAVVLLKAMANERRLQILCMLHN--QELSVGELCAKLQLSQSALSQHLAWLRRDGLVT 67 (98)
T ss_dssp HHHHHHHHHHCSHHHHHHHHHTTT--SCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHcCCHHHHHHHHHHhc--CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeE
Confidence 456777888889999999999987 8999999999999997655444 44578875
No 17
>3pqk_A Biofilm growth-associated repressor; helix-turn-helix motif, winged-helix fold, transcriptional R DNA binding, transcription; 2.09A {Xylella fastidiosa} PDB: 3pqj_A
Probab=85.85 E-value=2.4 Score=26.13 Aligned_cols=54 Identities=13% Similarity=0.317 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHhCCCHHHHHH---HHHhcCCee
Q psy9207 34 DDIAHIMKALQDEVQKRAISLISKAYSSIPNTSLSEFLGVTEQEAAA---IAQAEGWTV 89 (125)
Q Consensus 34 ~~~~~~i~~l~~~vR~~~~~li~~AY~sI~~~~~a~~Lgl~~~e~~~---~~~~~GW~~ 89 (125)
+.+..+...|.+..|.+|+..+.. ...+..+++..||++..-+-. ...+.|+..
T Consensus 11 ~~~~~~~~~l~~~~r~~Il~~L~~--~~~~~~ela~~l~is~~tvs~~L~~L~~~Glv~ 67 (102)
T 3pqk_A 11 NEVANLLKTLSHPVRLMLVCTLVE--GEFSVGELEQQIGIGQPTLSQQLGVLRESGIVE 67 (102)
T ss_dssp HHHHHHHHHHCSHHHHHHHHHHHT--CCBCHHHHHHHHTCCTTHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHh--CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeE
Confidence 456777888999999999999965 679999999999999654443 445579876
No 18
>1y6u_A XIS, excisionase from transposon TN916; structure, DNA architectural protein, tyrosine recombinase, winged-helix protein; NMR {Enterococcus faecalis}
Probab=85.47 E-value=1.4 Score=26.22 Aligned_cols=36 Identities=11% Similarity=0.319 Sum_probs=28.7
Q ss_pred CcchHHHHHHhCCCHHHHHHHHHh---cCCee-cC-ceeec
Q psy9207 61 SIPNTSLSEFLGVTEQEAAAIAQA---EGWTV-DK-VYTQP 96 (125)
Q Consensus 61 sI~~~~~a~~Lgl~~~e~~~~~~~---~GW~~-d~-~~~~p 96 (125)
.++++++|.|||++..-+.+.+.+ .+|.+ .| ..+++
T Consensus 16 ~LTi~EaAeylgIg~~~l~~L~~~~~~~~~~~~iG~~~lI~ 56 (70)
T 1y6u_A 16 TLTIEEASKYFRIGENKLRRLAEENKNANWLIMNGNRIQIK 56 (70)
T ss_dssp EEEHHHHHHHTCSCHHHHHHHHHHCTTCSSEEEETTEEEEE
T ss_pred eeCHHHHHHHHCcCHHHHHHHHHcCCCCCcEEEeCCEEEEE
Confidence 468899999999999999999887 47877 34 45554
No 19
>2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A
Probab=85.46 E-value=1 Score=28.42 Aligned_cols=54 Identities=19% Similarity=0.273 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHhCCCHHHHHHH---HHhcCCee
Q psy9207 34 DDIAHIMKALQDEVQKRAISLISKAYSSIPNTSLSEFLGVTEQEAAAI---AQAEGWTV 89 (125)
Q Consensus 34 ~~~~~~i~~l~~~vR~~~~~li~~AY~sI~~~~~a~~Lgl~~~e~~~~---~~~~GW~~ 89 (125)
+.+..+...|.+..|.+|+.++.. ..+++.+++..||++..-+-.. ..+.|+..
T Consensus 13 ~~~~~~~~al~~~~r~~IL~~L~~--~~~s~~eLa~~lgis~stvs~~L~~L~~~GlV~ 69 (108)
T 2kko_A 13 DQVARVGKALANGRRLQILDLLAQ--GERAVEAIATATGMNLTTASANLQALKSGGLVE 69 (108)
T ss_dssp HHHHHHHHHHTTSTTHHHHHHHTT--CCEEHHHHHHHHTCCHHHHHHHHHHHHHHTSEE
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHc--CCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCeE
Confidence 355667788888999999999974 7899999999999997665444 44568875
No 20
>1u2w_A CADC repressor, cadmium efflux system accessory protein; LEAD, SOFT metal ION resistance, ARSR/SM family, DNA binding protein; 1.90A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 3f72_A
Probab=84.89 E-value=5.8 Score=25.40 Aligned_cols=56 Identities=20% Similarity=0.270 Sum_probs=45.0
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHhCCCHHHHHHHH---HhcCCee
Q psy9207 33 SDDIAHIMKALQDEVQKRAISLISKAYSSIPNTSLSEFLGVTEQEAAAIA---QAEGWTV 89 (125)
Q Consensus 33 s~~~~~~i~~l~~~vR~~~~~li~~AY~sI~~~~~a~~Lgl~~~e~~~~~---~~~GW~~ 89 (125)
.+.+..+...|.+..|.+|+.++.. ...++..+++..||++..-+-... .+.|+..
T Consensus 29 ~~~~~~~~~al~~~~rl~IL~~L~~-~~~~s~~eLa~~l~is~stvs~~L~~L~~~Glv~ 87 (122)
T 1u2w_A 29 ISGVSQILKAIADENRAKITYALCQ-DEELCVCDIANILGVTIANASHHLRTLYKQGVVN 87 (122)
T ss_dssp HHHHHHHHHHHHSHHHHHHHHHHHH-SSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHH-CCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCeE
Confidence 4567778889999999999999974 467999999999999976655543 4578876
No 21
>3e21_A HFAF1, FAS-associated factor 1; UBA, alternative splicing, apoptosis, nucleus, phosphoprotein; 1.73A {Homo sapiens}
Probab=84.81 E-value=0.47 Score=26.14 Aligned_cols=27 Identities=15% Similarity=0.407 Sum_probs=24.1
Q ss_pred hHHHHHHhCCCH-HHHHHHHHhcCCeec
Q psy9207 64 NTSLSEFLGVTE-QEAAAIAQAEGWTVD 90 (125)
Q Consensus 64 ~~~~a~~Lgl~~-~e~~~~~~~~GW~~d 90 (125)
+.+++.+.|+++ +++..+..+.+|-++
T Consensus 9 ia~F~~iTG~~d~~~A~~~Lea~nWDLe 36 (45)
T 3e21_A 9 LADFQACTGIENIDEAITLLEQNNWDLV 36 (45)
T ss_dssp HHHHHHHHCCCCHHHHHHHHHHTTTCHH
T ss_pred HHHHHHHHCCCCHHHHHHHHHHcCCcHH
Confidence 567899999995 999999999999986
No 22
>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5
Probab=84.72 E-value=2.8 Score=25.54 Aligned_cols=53 Identities=8% Similarity=0.124 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHhCCCHHHHHH---HHHhcCCeec
Q psy9207 35 DIAHIMKALQDEVQKRAISLISKAYSSIPNTSLSEFLGVTEQEAAA---IAQAEGWTVD 90 (125)
Q Consensus 35 ~~~~~i~~l~~~vR~~~~~li~~AY~sI~~~~~a~~Lgl~~~e~~~---~~~~~GW~~d 90 (125)
.+..+...+.+..|.+|+.++ . ..++..+++..||++..-+-. ...+.|+...
T Consensus 20 ~~~~~~~~l~~~~r~~Il~~L-~--~~~~~~eLa~~l~is~~tv~~~L~~L~~~Glv~~ 75 (96)
T 1y0u_A 20 YHKRYNYAVTNPVRRKILRML-D--KGRSEEEIMQTLSLSKKQLDYHLKVLEAGFCIER 75 (96)
T ss_dssp HHHHHHHHHSCHHHHHHHHHH-H--TTCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHhCCHHHHHHHHHH-c--CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEE
Confidence 455567778888999999999 3 669999999999999755444 3455788763
No 23
>3f6o_A Probable transcriptional regulator, ARSR family protein; transcriptional regulator,RHA00566,MCSG, structural genomics, PSI-2; 1.90A {Rhodococcus SP}
Probab=84.25 E-value=2.1 Score=27.33 Aligned_cols=54 Identities=15% Similarity=0.318 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHhCCCHHHHHHH---HHhcCCee
Q psy9207 34 DDIAHIMKALQDEVQKRAISLISKAYSSIPNTSLSEFLGVTEQEAAAI---AQAEGWTV 89 (125)
Q Consensus 34 ~~~~~~i~~l~~~vR~~~~~li~~AY~sI~~~~~a~~Lgl~~~e~~~~---~~~~GW~~ 89 (125)
+.+..+...|.+..|.+|+.++.. ..+++.++|..||++..-+-.. ..+.|+..
T Consensus 6 ~~~~~~~~al~~~~R~~Il~~L~~--~~~~~~eLa~~l~is~~tvs~hL~~L~~~GlV~ 62 (118)
T 3f6o_A 6 EQLNGIFQALADPTRRAVLGRLSR--GPATVSELAKPFDMALPSFMKHIHFLEDSGWIR 62 (118)
T ss_dssp HHHHHHHHHHTSHHHHHHHHHHHT--CCEEHHHHHTTCCSCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHh--CCCCHHHHHHHhCcCHHHHHHHHHHHHHCCCeE
Confidence 567778899999999999999984 7899999999999997555444 45579886
No 24
>1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 1r1v_A 2kjb_A 2kjc_A
Probab=84.17 E-value=2.5 Score=26.33 Aligned_cols=54 Identities=20% Similarity=0.251 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHhCCCHHHHHHH---HHhcCCee
Q psy9207 34 DDIAHIMKALQDEVQKRAISLISKAYSSIPNTSLSEFLGVTEQEAAAI---AQAEGWTV 89 (125)
Q Consensus 34 ~~~~~~i~~l~~~vR~~~~~li~~AY~sI~~~~~a~~Lgl~~~e~~~~---~~~~GW~~ 89 (125)
+.+..+...|.+..|.+|+.++. -..+++.++|..||++..-+-.. ..+.|+..
T Consensus 14 ~~~~~~~~~l~~~~r~~IL~~L~--~~~~~~~ela~~l~is~stvs~~L~~L~~~Glv~ 70 (106)
T 1r1u_A 14 ERVTEIFKALGDYNRIRIMELLS--VSEASVGHISHQLNLSQSNVSHQLKLLKSVHLVK 70 (106)
T ss_dssp HHHHHHHHHTCSHHHHHHHHHHH--HCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHhCCHHHHHHHHHHH--hCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeE
Confidence 34566777788999999999997 46789999999999997555444 44578876
No 25
>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa}
Probab=83.69 E-value=8.3 Score=26.29 Aligned_cols=56 Identities=9% Similarity=0.156 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHhcC-----------CcchHHHHHHhCCCHHHHHH---HHHhcCCe-ec-CceeeccCC
Q psy9207 44 QDEVQKRAISLISKAYS-----------SIPNTSLSEFLGVTEQEAAA---IAQAEGWT-VD-KVYTQPVKK 99 (125)
Q Consensus 44 ~~~vR~~~~~li~~AY~-----------sI~~~~~a~~Lgl~~~e~~~---~~~~~GW~-~d-~~~~~p~~~ 99 (125)
....++|++..+-.-+. .++..++|.|||++.+-+.. -..+.|+- ++ +.+.++.+.
T Consensus 150 ~~~~~~Rl~~~L~~~~~~~~~~~~~~~~~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~~~~~~i~i~d~~ 221 (227)
T 3dkw_A 150 LKNATHRVVRYLLTLAAHAPGENCRVEIPVAKQLVAGHLSIQPETFSRIMHRLGDEGIIHLDGREISILDRE 221 (227)
T ss_dssp HHHHHHHHHHHHHHHHCSSSSSCCCCCCCSCTHHHHHHTTSCHHHHHHHHHHHHHHTSEEESSSCEEESCST
T ss_pred cCCHHHHHHHHHHHhhhhcCCCCeEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHCCcEEecCCEEEEeCHH
Confidence 35667888876644332 35778999999999755444 45557985 45 556555443
No 26
>2lkp_A Transcriptional regulator, ARSR family; symmetric homodimer, NI(II) binding protein, DNA binding Pro transcription regulator; NMR {Mycobacterium tuberculosis}
Probab=83.51 E-value=3.7 Score=25.87 Aligned_cols=53 Identities=19% Similarity=0.371 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHhCCCHHHHHH---HHHhcCCee
Q psy9207 35 DIAHIMKALQDEVQKRAISLISKAYSSIPNTSLSEFLGVTEQEAAA---IAQAEGWTV 89 (125)
Q Consensus 35 ~~~~~i~~l~~~vR~~~~~li~~AY~sI~~~~~a~~Lgl~~~e~~~---~~~~~GW~~ 89 (125)
.+..+...+.+..|-+++.++.. ..+++.++|..||++..-+-. -..+.|+..
T Consensus 21 ~~~~~~~~l~~~~~~~il~~L~~--~~~s~~ela~~l~is~stvsr~l~~Le~~Glv~ 76 (119)
T 2lkp_A 21 QVASTLQALATPSRLMILTQLRN--GPLPVTDLAEAIGMEQSAVSHQLRVLRNLGLVV 76 (119)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHH--CCCCHHHHHHHHSSCHHHHHHHHHHHHHHCSEE
T ss_pred HHHHHHHHhCCHHHHHHHHHHHH--CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEE
Confidence 45666777778889999999987 689999999999999755433 344479976
No 27
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=83.19 E-value=2.2 Score=25.38 Aligned_cols=41 Identities=15% Similarity=0.257 Sum_probs=31.6
Q ss_pred HHHHHHHHHHhcCCcchHHHHHHhCCCHHHHHHH---HHhcCCee
Q psy9207 48 QKRAISLISKAYSSIPNTSLSEFLGVTEQEAAAI---AQAEGWTV 89 (125)
Q Consensus 48 R~~~~~li~~AY~sI~~~~~a~~Lgl~~~e~~~~---~~~~GW~~ 89 (125)
|++|+.++... ..++..++|..||++..-+... ..+.|+-.
T Consensus 2 r~~Il~~L~~~-~~~s~~eLa~~lgvs~~tv~r~L~~L~~~GlI~ 45 (81)
T 2htj_A 2 KNEILEFLNRH-NGGKTAEIAEALAVTDYQARYYLLLLEKAGMVQ 45 (81)
T ss_dssp HHHHHHHHHHS-CCCCHHHHHHHHTSCHHHHHHHHHHHHHHTSEE
T ss_pred HHHHHHHHHHc-CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEE
Confidence 67888888754 6799999999999997555444 45578876
No 28
>1r1t_A Transcriptional repressor SMTB; zinc, transcriptional regulation, winged HTH protein, DNA binding, transcription repressor; 1.70A {Synechococcus elongatus pcc 7942} SCOP: a.4.5.5 PDB: 1r23_A 1smt_A 1r22_A
Probab=82.28 E-value=3.5 Score=26.65 Aligned_cols=54 Identities=20% Similarity=0.301 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHhCCCHHHHHHH---HHhcCCee
Q psy9207 34 DDIAHIMKALQDEVQKRAISLISKAYSSIPNTSLSEFLGVTEQEAAAI---AQAEGWTV 89 (125)
Q Consensus 34 ~~~~~~i~~l~~~vR~~~~~li~~AY~sI~~~~~a~~Lgl~~~e~~~~---~~~~GW~~ 89 (125)
+.+..+...|.+..|-+|+..+.. ...+..++|..||++..-+-.. ..+.|+..
T Consensus 34 ~~~~~~~kaL~~~~rl~IL~~L~~--~~~s~~ela~~lgis~stvs~~L~~Le~~Glv~ 90 (122)
T 1r1t_A 34 QSLAEFFAVLADPNRLRLLSLLAR--SELCVGDLAQAIGVSESAVSHQLRSLRNLRLVS 90 (122)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHTT--CCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHc--CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeE
Confidence 355667778888899999999974 6789999999999997555444 44579987
No 29
>2zkz_A Transcriptional repressor PAGR; protein-DNA, HTH motif, dimer, DN binding, transcription regulation; 2.00A {Bacillus anthracis}
Probab=81.54 E-value=5 Score=24.71 Aligned_cols=51 Identities=12% Similarity=0.204 Sum_probs=40.5
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHhCCCHHHHHHHHHh
Q psy9207 33 SDDIAHIMKALQDEVQKRAISLISKAYSSIPNTSLSEFLGVTEQEAAAIAQA 84 (125)
Q Consensus 33 s~~~~~~i~~l~~~vR~~~~~li~~AY~sI~~~~~a~~Lgl~~~e~~~~~~~ 84 (125)
.+.+..+...|.+..|-+|+..+.. ....+..++|..||++..-+-.....
T Consensus 14 ~~~~~~~~~aL~~~~Rl~IL~~l~~-~~~~~~~ela~~l~is~stvs~hL~~ 64 (99)
T 2zkz_A 14 LEDDAELLKTMAHPMRLKIVNELYK-HKALNVTQIIQILKLPQSTVSQHLCK 64 (99)
T ss_dssp HHHHHHHHHHHCSHHHHHHHHHHHH-HSCEEHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHH-CCCcCHHHHHHHHCcCHHHHHHHHHH
Confidence 3567778888999999999965543 36799999999999998777666554
No 30
>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genom transcription; 2.05A {Pyrococcus horikoshii} SCOP: a.4.5.28
Probab=78.90 E-value=8.1 Score=23.03 Aligned_cols=48 Identities=13% Similarity=0.185 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHHHhcCCcchHHHHHHhCCCHHHHHHH---HHhcCCee
Q psy9207 41 KALQDEVQKRAISLISKAYSSIPNTSLSEFLGVTEQEAAAI---AQAEGWTV 89 (125)
Q Consensus 41 ~~l~~~vR~~~~~li~~AY~sI~~~~~a~~Lgl~~~e~~~~---~~~~GW~~ 89 (125)
..|.+..|-+|+..+.. ...++..++|..||++..-+-.. ..+.||..
T Consensus 11 ~~l~~~~~~~iL~~L~~-~~~~~~~ela~~l~is~~tvs~~l~~L~~~gli~ 61 (100)
T 1ub9_A 11 HILGNPVRLGIMIFLLP-RRKAPFSQIQKVLDLTPGNLDSHIRVLERNGLVK 61 (100)
T ss_dssp HHHHSHHHHHHHHHHHH-HSEEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEE
T ss_pred cccCChHHHHHHHHHHh-cCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEE
Confidence 56778889999998864 46799999999999997555444 45578876
No 31
>3lsg_A Two-component response regulator YESN; structural genomics, PSI-2, protein structure initiative, MCSG; 2.05A {Fusobacterium nucleatum}
Probab=78.73 E-value=6.1 Score=24.17 Aligned_cols=42 Identities=17% Similarity=0.262 Sum_probs=32.0
Q ss_pred HHHHHHHHHHhcC--CcchHHHHHHhCCCHHHHHHHHHhc-CCee
Q psy9207 48 QKRAISLISKAYS--SIPNTSLSEFLGVTEQEAAAIAQAE-GWTV 89 (125)
Q Consensus 48 R~~~~~li~~AY~--sI~~~~~a~~Lgl~~~e~~~~~~~~-GW~~ 89 (125)
-+++.+.|...|. .++++++|..+|+|...+.....+. |=+.
T Consensus 4 ~~~i~~~i~~~~~~~~~~~~~lA~~~~~S~~~l~r~fk~~~g~s~ 48 (103)
T 3lsg_A 4 KELIQNIIEESYTDSQFTLSVLSEKLDLSSGYLSIMFKKNFGIPF 48 (103)
T ss_dssp HHHHHHHHHHHTTCTTCCHHHHHHHTTCCHHHHHHHHHHHHSSCH
T ss_pred HHHHHHHHHHHccCCCCCHHHHHHHHCcCHHHHHHHHHHHHCcCH
Confidence 3556667777775 6999999999999998877766654 6554
No 32
>2k9s_A Arabinose operon regulatory protein; activator, arabinose catabolism, carbohydrate metabolism, cytoplasm, DNA-binding, repressor, transcription; NMR {Escherichia coli}
Probab=77.11 E-value=5.4 Score=24.66 Aligned_cols=41 Identities=15% Similarity=0.268 Sum_probs=32.0
Q ss_pred HHHHHHHHHhcC--CcchHHHHHHhCCCHHHHHHHHHhc-CCee
Q psy9207 49 KRAISLISKAYS--SIPNTSLSEFLGVTEQEAAAIAQAE-GWTV 89 (125)
Q Consensus 49 ~~~~~li~~AY~--sI~~~~~a~~Lgl~~~e~~~~~~~~-GW~~ 89 (125)
.++.+.|...|. .++++++|..+|+|...+.....+. |=+.
T Consensus 6 ~~~~~~i~~~~~~~~~~~~~lA~~~~~S~~~l~r~fk~~~G~s~ 49 (107)
T 2k9s_A 6 REACQYISDHLADSNFDIASVAQHVCLSPSRLSHLFRQQLGISV 49 (107)
T ss_dssp HHHHHHHHHTSSCSSCCHHHHHHHTTSCHHHHHHHHHHHHSSCH
T ss_pred HHHHHHHHHHhccCCCCHHHHHHHHCCCHHHHHHHHHHHHCcCH
Confidence 456777777775 8999999999999998877776653 6554
No 33
>1nd9_A Translation initiation factor IF-2; NMR {Escherichia coli} SCOP: a.6.1.6
Probab=76.70 E-value=2 Score=22.95 Aligned_cols=27 Identities=7% Similarity=0.015 Sum_probs=23.5
Q ss_pred CcchHHHHHHhCCCHHHHHHHHHhcCC
Q psy9207 61 SIPNTSLSEFLGVTEQEAAAIAQAEGW 87 (125)
Q Consensus 61 sI~~~~~a~~Lgl~~~e~~~~~~~~GW 87 (125)
.+.+.++|.-||++..++.++..+.|=
T Consensus 2 k~rv~~lAkel~~~~k~l~~~l~~~g~ 28 (49)
T 1nd9_A 2 DVTIKTLAAERQTSVERLVQQFADAGI 28 (49)
T ss_dssp EECTTHHHHHHSSSHHHHHHHHHHHTS
T ss_pred cccHHHHHHHHCcCHHHHHHHHHHcCC
Confidence 367889999999999999999988773
No 34
>2lju_A Putative oxidoreductase; structural genomics, seattle structural GENO center for infectious disease, ssgcid; NMR {Ehrlichia chaffeensis}
Probab=75.73 E-value=2.8 Score=27.27 Aligned_cols=17 Identities=29% Similarity=0.096 Sum_probs=15.2
Q ss_pred CHHHHHHHHHhcCCeec
Q psy9207 74 TEQEAAAIAQAEGWTVD 90 (125)
Q Consensus 74 ~~~e~~~~~~~~GW~~d 90 (125)
+.+++++||+++||.+.
T Consensus 68 skE~AiayAek~G~~y~ 84 (108)
T 2lju_A 68 TRELAIAYAVAHKIDYT 84 (108)
T ss_dssp SHHHHHHHHHHTTCEEE
T ss_pred CHHHHHHHHHHcCCEEE
Confidence 47999999999999993
No 35
>1ng7_A Poliovirus 3A-N, genome polyprotein [core protein P3A]; helical hairpin, unfolded domain, symmetric dimer, viral protein; NMR {Human poliovirus 1} SCOP: a.178.1.1
Probab=74.84 E-value=1.4 Score=25.77 Aligned_cols=16 Identities=31% Similarity=0.659 Sum_probs=14.2
Q ss_pred CHHHHHHHHHhcCCee
Q psy9207 74 TEQEAAAIAQAEGWTV 89 (125)
Q Consensus 74 ~~~e~~~~~~~~GW~~ 89 (125)
..+|+++||+++||-+
T Consensus 30 ds~eV~~YC~~kGwIi 45 (60)
T 1ng7_A 30 DSQEVRDYCEKKGWIV 45 (60)
T ss_dssp CCHHHHHHHHHHTCCC
T ss_pred CCHHHHHHHHHCCcee
Confidence 3489999999999987
No 36
>3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV}
Probab=73.96 E-value=18 Score=24.57 Aligned_cols=52 Identities=17% Similarity=0.246 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHhcC-------------CcchHHHHHHhCCCHHHHHH---HHHhcCCe-ec-Cceeec
Q psy9207 45 DEVQKRAISLISKAYS-------------SIPNTSLSEFLGVTEQEAAA---IAQAEGWT-VD-KVYTQP 96 (125)
Q Consensus 45 ~~vR~~~~~li~~AY~-------------sI~~~~~a~~Lgl~~~e~~~---~~~~~GW~-~d-~~~~~p 96 (125)
...++|++..+-.-.. .++..++|.|||++.+-+-. -.++.|+- ++ +.+.+.
T Consensus 158 ~~~~~Rl~~~L~~l~~~~~~~~~~~~~~~~lt~~~lA~~lg~sr~tvsR~l~~L~~~g~I~~~~~~i~i~ 227 (230)
T 3iwz_A 158 LDVTDRIVRTLHDLSKEPEAMSHPQGTQLRVSRQELARLVGCSREMAGRVLKKLQADGLLHARGKTVVLY 227 (230)
T ss_dssp CCHHHHHHHHHHHHTTSTTCEEETTEEEEECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETTEEEEE
T ss_pred CCHHHHHHHHHHHHHHhhCCCCCCCceecCCCHHHHHHHhCCcHHHHHHHHHHHHHCCCEEECCCEEEEe
Confidence 3456777776654322 26789999999999755444 45567884 44 444443
No 37
>2elj_A Transcriptional adapter 2; YDR448W, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Saccharomyces cerevisiae}
Probab=73.61 E-value=13 Score=22.94 Aligned_cols=42 Identities=12% Similarity=0.270 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHhcCCcchHHHHHHhCCCH---HHHHHHHHhcCC
Q psy9207 46 EVQKRAISLISKAYSSIPNTSLSEFLGVTE---QEAAAIAQAEGW 87 (125)
Q Consensus 46 ~vR~~~~~li~~AY~sI~~~~~a~~Lgl~~---~e~~~~~~~~GW 87 (125)
.+.+.+++...+.-..+..+++..++.++. ..+-+|..+.||
T Consensus 43 ~~K~~Li~E~~k~g~~lkk~da~~~~kiD~~K~~~iydf~~~~Gw 87 (88)
T 2elj_A 43 VLKEVMFRELLKTGGNLSKSACRELLNIDPIKANRIYDFFQSQNW 87 (88)
T ss_dssp HHHHHHHHHHHHHSSCCCHHHHHHHTTSCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhCCCccHHHHHHHHcccHHHHHHHHHHHHHcCC
Confidence 345555555555555688999999999986 567888999999
No 38
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=73.28 E-value=3.1 Score=26.91 Aligned_cols=31 Identities=13% Similarity=0.299 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHhcCCcchHHHHHHhCC---CHHH
Q psy9207 45 DEVQKRAISLISKAYSSIPNTSLSEFLGV---TEQE 77 (125)
Q Consensus 45 ~~vR~~~~~li~~AY~sI~~~~~a~~Lgl---~~~e 77 (125)
.++|++|+.++.. .-++..+++..||+ ++.+
T Consensus 10 ~T~Re~Ii~lL~~--~plta~ei~~~l~i~~~~~ke 43 (105)
T 2gmg_A 10 ATRREKIIELLLE--GDYSPSELARILDMRGKGSKK 43 (105)
T ss_dssp HHHHHHHHHHTTT--SCBCTTHHHHSSCCCSSCCHH
T ss_pred ccHHHHHHHHHHc--CCCCHHHHHHHhCCCCCChHH
Confidence 5899999999984 88999999999999 6555
No 39
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=72.56 E-value=8.8 Score=23.07 Aligned_cols=42 Identities=10% Similarity=0.196 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHh------cCCcchHHHHHHhCCCHHHHHHH---HHhcCCee
Q psy9207 47 VQKRAISLISKA------YSSIPNTSLSEFLGVTEQEAAAI---AQAEGWTV 89 (125)
Q Consensus 47 vR~~~~~li~~A------Y~sI~~~~~a~~Lgl~~~e~~~~---~~~~GW~~ 89 (125)
.+++|++.|... | .+++.++|..||+|..-+... ..+.|.-.
T Consensus 5 r~~~IL~~I~~~i~~~~g~-~psv~EIa~~lgvS~~TVrr~L~~Le~kG~I~ 55 (77)
T 2jt1_A 5 IVTKIISIVQERQNMDDGA-PVKTRDIADAAGLSIYQVRLYLEQLHDVGVLE 55 (77)
T ss_dssp HHHHHHHHHHHHHHHHTTS-CEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHHHHhhccCC-CcCHHHHHHHHCCCHHHHHHHHHHHHHCCcEE
Confidence 356777777766 5 499999999999997555443 33456554
No 40
>1uly_A Hypothetical protein PH1932; helix-turn-helix, structural genomics, DNA binding protein; 2.50A {Pyrococcus horikoshii} SCOP: a.4.5.58 PDB: 2cwe_A
Probab=72.40 E-value=9.9 Score=26.56 Aligned_cols=50 Identities=20% Similarity=0.379 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHhCCCHHHHHHH---HHhcCCee
Q psy9207 38 HIMKALQDEVQKRAISLISKAYSSIPNTSLSEFLGVTEQEAAAI---AQAEGWTV 89 (125)
Q Consensus 38 ~~i~~l~~~vR~~~~~li~~AY~sI~~~~~a~~Lgl~~~e~~~~---~~~~GW~~ 89 (125)
.++..+.+..|.+|+.++.. ..++..++|..+|++..-+... ..+.|+-.
T Consensus 12 ~~~k~l~d~~~~~IL~~L~~--~~~s~~eLA~~lglS~stv~~~l~~Le~~GlI~ 64 (192)
T 1uly_A 12 EVIKVMLEDTRRKILKLLRN--KEMTISQLSEILGKTPQTIYHHIEKLKEAGLVE 64 (192)
T ss_dssp HHHHHHHSHHHHHHHHHHTT--CCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHhCCHHHHHHHHHHHc--CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEE
Confidence 45666778899999999984 6899999999999998665444 44568865
No 41
>3mn2_A Probable ARAC family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.80A {Rhodopseudomonas palustris}
Probab=71.74 E-value=9.2 Score=23.52 Aligned_cols=40 Identities=15% Similarity=0.273 Sum_probs=28.4
Q ss_pred HHHHHHHHhc-CCcchHHHHHHhCCCHHHHHHHHHhc-CCee
Q psy9207 50 RAISLISKAY-SSIPNTSLSEFLGVTEQEAAAIAQAE-GWTV 89 (125)
Q Consensus 50 ~~~~li~~AY-~sI~~~~~a~~Lgl~~~e~~~~~~~~-GW~~ 89 (125)
++.+.|..-| ..++++++|..+|+|...+.....+. |=+.
T Consensus 6 ~~~~~i~~~~~~~~~~~~lA~~~~~s~~~l~r~fk~~~G~s~ 47 (108)
T 3mn2_A 6 QVEEYIEANWMRPITIEKLTALTGISSRGIFKAFQRSRGYSP 47 (108)
T ss_dssp HHHHHHHHHTTSCCCHHHHHHHHTCCHHHHHHHHHHHTSSCH
T ss_pred HHHHHHHHcccCCCCHHHHHHHHCCCHHHHHHHHHHHhCcCH
Confidence 4444555554 56999999999999998877766653 5443
No 42
>2jya_A AGR_C_3324P, uncharacterized protein ATU1810; protein with unknown function ATU1810, ontario centre for ST proteomics, OCSP; NMR {Agrobacterium tumefaciens str}
Probab=71.54 E-value=3.1 Score=26.99 Aligned_cols=16 Identities=38% Similarity=0.439 Sum_probs=14.8
Q ss_pred CHHHHHHHHHhcCCee
Q psy9207 74 TEQEAAAIAQAEGWTV 89 (125)
Q Consensus 74 ~~~e~~~~~~~~GW~~ 89 (125)
+.+++++||++.||.+
T Consensus 60 skE~AiayAek~G~~y 75 (106)
T 2jya_A 60 TQEQAEAYAQRKGIEY 75 (106)
T ss_dssp SHHHHHHHHHHHTCEE
T ss_pred CHHHHHHHHHHcCCEE
Confidence 4799999999999999
No 43
>2jsc_A Transcriptional regulator RV1994C/MT2050; cadmium, transcriptional repressor, solution structure, STRU genomics; NMR {Mycobacterium tuberculosis}
Probab=71.21 E-value=4 Score=26.02 Aligned_cols=54 Identities=20% Similarity=0.262 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHhCCCHHHHHHHHH---hcCCee
Q psy9207 34 DDIAHIMKALQDEVQKRAISLISKAYSSIPNTSLSEFLGVTEQEAAAIAQ---AEGWTV 89 (125)
Q Consensus 34 ~~~~~~i~~l~~~vR~~~~~li~~AY~sI~~~~~a~~Lgl~~~e~~~~~~---~~GW~~ 89 (125)
+.+..+...|.+..|.+|+..+.. ...+..+++..||++..-+-.... +.|+..
T Consensus 9 ~~~~~~~~aL~~~~r~~IL~~L~~--~~~~~~eLa~~lgis~stvs~~L~~L~~~GlV~ 65 (118)
T 2jsc_A 9 SALARLGRALADPTRCRILVALLD--GVCYPGQLAAHLGLTRSNVSNHLSCLRGCGLVV 65 (118)
T ss_dssp --CTTHHHHHSSHHHHHHHHHHHT--TCCSTTTHHHHHSSCHHHHHHHHHHHTTTTSEE
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHc--CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCceE
Confidence 344556777888999999998874 568899999999999766655544 468875
No 44
>3oou_A LIN2118 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; HET: BTB; 1.57A {Listeria innocua}
Probab=70.66 E-value=9.8 Score=23.44 Aligned_cols=40 Identities=18% Similarity=0.243 Sum_probs=28.6
Q ss_pred HHHHHHHHhcC-CcchHHHHHHhCCCHHHHHHHHHhc-CCee
Q psy9207 50 RAISLISKAYS-SIPNTSLSEFLGVTEQEAAAIAQAE-GWTV 89 (125)
Q Consensus 50 ~~~~li~~AY~-sI~~~~~a~~Lgl~~~e~~~~~~~~-GW~~ 89 (125)
++.+.|..-|. .++++++|..+|+|...+.....+. |=+.
T Consensus 9 ~~~~~i~~~~~~~~~~~~lA~~~~~S~~~l~r~fk~~~G~s~ 50 (108)
T 3oou_A 9 NVLSYITEHFSEGMSLKTLGNDFHINAVYLGQLFQKEMGEHF 50 (108)
T ss_dssp HHHHHHHHHTTSCCCHHHHHHHHTSCHHHHHHHHHHHHSSCH
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHCcCHHHHHHHHHHHHCcCH
Confidence 44455555554 6999999999999988777766654 6554
No 45
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}
Probab=70.28 E-value=5.3 Score=24.33 Aligned_cols=39 Identities=15% Similarity=0.317 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHhc---CCcchHHHHHHh-CCCHHHHHHHHHh
Q psy9207 46 EVQKRAISLISKAY---SSIPNTSLSEFL-GVTEQEAAAIAQA 84 (125)
Q Consensus 46 ~vR~~~~~li~~AY---~sI~~~~~a~~L-gl~~~e~~~~~~~ 84 (125)
.-|.+|++...+-. ..+.++.+|... |+|+.|+...|.+
T Consensus 14 ~~R~~IL~~~l~~~~l~~dvdl~~LA~~T~G~SGADL~~l~~e 56 (86)
T 2krk_A 14 EARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTE 56 (86)
T ss_dssp HHHHHHHHHHTTTSEECTTCCCHHHHHTCSSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCcccCHHHHHHHcCCCCHHHHHHHHHH
Confidence 45777777766654 468888888888 9999998888765
No 46
>3oio_A Transcriptional regulator (ARAC-type DNA-binding containing proteins); PSI-2, midwest center for structural genomics; 1.65A {Chromobacterium violaceum}
Probab=70.21 E-value=8.2 Score=24.01 Aligned_cols=40 Identities=15% Similarity=0.335 Sum_probs=29.7
Q ss_pred HHHHHHHHhc-CCcchHHHHHHhCCCHHHHHHHHHhc-CCee
Q psy9207 50 RAISLISKAY-SSIPNTSLSEFLGVTEQEAAAIAQAE-GWTV 89 (125)
Q Consensus 50 ~~~~li~~AY-~sI~~~~~a~~Lgl~~~e~~~~~~~~-GW~~ 89 (125)
++.+.|...| ..++++++|..+|+|...+.....+. |=+.
T Consensus 11 ~~~~~i~~~~~~~~~~~~lA~~~~~S~~~l~r~fk~~~G~s~ 52 (113)
T 3oio_A 11 EAVSLMEANIEEPLSTDDIAYYVGVSRRQLERLFKQYLGTVP 52 (113)
T ss_dssp HHHHHHHTCSSSCCCHHHHHHHHTSCHHHHHHHHHHHTSSCH
T ss_pred HHHHHHHhhhcCCCCHHHHHHHHCcCHHHHHHHHHHHHCcCH
Confidence 4555666665 45999999999999998887776664 6554
No 47
>3mkl_A HTH-type transcriptional regulator GADX; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics; 2.15A {Escherichia coli}
Probab=67.72 E-value=5.8 Score=25.09 Aligned_cols=43 Identities=9% Similarity=0.051 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHhc-CCcchHHHHHHhCCCHHHHHHHHHhcCCee
Q psy9207 47 VQKRAISLISKAY-SSIPNTSLSEFLGVTEQEAAAIAQAEGWTV 89 (125)
Q Consensus 47 vR~~~~~li~~AY-~sI~~~~~a~~Lgl~~~e~~~~~~~~GW~~ 89 (125)
+-+++...|..-| ..++++++|..+|++...+.....+.|=+.
T Consensus 8 ~~~~~~~~i~~~~~~~~~~~~lA~~~~~S~~~l~r~fk~~G~s~ 51 (120)
T 3mkl_A 8 MRTRVCTVINNNIAHEWTLARIASELLMSPSLLKKKLREEETSY 51 (120)
T ss_dssp HHHHHHHHHHTSTTSCCCHHHHHHHTTCCHHHHHHHHHHTTCCH
T ss_pred HHHHHHHHHHHhccCCCCHHHHHHHHCcCHHHHHHHHHHcCCCH
Confidence 3455666666665 468999999999999988877776656554
No 48
>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1
Probab=67.54 E-value=5 Score=20.48 Aligned_cols=26 Identities=27% Similarity=0.256 Sum_probs=20.4
Q ss_pred hHHHHHHhCCCHHHHHHHHHhcCCeec
Q psy9207 64 NTSLSEFLGVTEQEAAAIAQAEGWTVD 90 (125)
Q Consensus 64 ~~~~a~~Lgl~~~e~~~~~~~~GW~~d 90 (125)
+..+..| |++.+++.......||-++
T Consensus 8 i~~L~~m-Gf~~~~a~~AL~~~~~n~e 33 (40)
T 1z96_A 8 IAQLVSM-GFDPLEAAQALDAANGDLD 33 (40)
T ss_dssp HHHHHHT-TCCHHHHHHHHHHTTTCHH
T ss_pred HHHHHHc-CCCHHHHHHHHHHcCCCHH
Confidence 5667777 9999888888887888664
No 49
>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656}
Probab=67.25 E-value=13 Score=25.09 Aligned_cols=51 Identities=22% Similarity=0.281 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHhcC-------CcchHHHHHHhCCCHHHHHHH---HHhcCCee-c-Cceeec
Q psy9207 46 EVQKRAISLISKAYS-------SIPNTSLSEFLGVTEQEAAAI---AQAEGWTV-D-KVYTQP 96 (125)
Q Consensus 46 ~vR~~~~~li~~AY~-------sI~~~~~a~~Lgl~~~e~~~~---~~~~GW~~-d-~~~~~p 96 (125)
..++|++..+..-.. .++..++|.|||++.+-+-.. ..+.|+-- + +.+.++
T Consensus 147 ~~~~Rl~~~L~~~~~~~~~~~~~~t~~~lA~~lg~sr~tvsR~l~~L~~~g~I~~~~~~i~i~ 209 (220)
T 3dv8_A 147 SLDKRVASFLLEETSIEGTNELKITHETIANHLGSHREVITRMLRYFQVEGLVKLSRGKITIL 209 (220)
T ss_dssp CHHHHHHHHHHHHHHHHTSSEECCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETTEEEES
T ss_pred CHHHHHHHHHHHhhhhcCCceecCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEeCCCEEEEe
Confidence 445555555443222 678899999999997655444 45578853 3 444444
No 50
>2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A*
Probab=67.01 E-value=25 Score=23.76 Aligned_cols=45 Identities=16% Similarity=0.248 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHhc--------------CCcchHHHHHHhCCCHHHHHHH---HHhcCCee
Q psy9207 45 DEVQKRAISLISKAY--------------SSIPNTSLSEFLGVTEQEAAAI---AQAEGWTV 89 (125)
Q Consensus 45 ~~vR~~~~~li~~AY--------------~sI~~~~~a~~Lgl~~~e~~~~---~~~~GW~~ 89 (125)
...++|++..+..-. -.++..++|.|||++.+-+... ..+.|+--
T Consensus 137 ~~~~~Rl~~~L~~l~~~~g~~~~~~~~~~~~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~ 198 (220)
T 2fmy_A 137 KDARLRLAEFLVQAAMDTGLKVPQGIKLELGLNTEEIALMLGTTRQTVSVLLNDFKKMGILE 198 (220)
T ss_dssp HHHHHHHHHHHHHHHHHHCEEETTEEEEECSSCHHHHHHHHTSCHHHHHHHHHHHHHTTSEE
T ss_pred CCHHHHHHHHHHHHHHHhCCCCCCcEEEeccCCHHHHHHHhCCcHHHHHHHHHHHHHCCCEE
Confidence 456677776554321 3578899999999997655444 45578853
No 51
>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2
Probab=66.88 E-value=25 Score=23.37 Aligned_cols=36 Identities=14% Similarity=0.255 Sum_probs=24.4
Q ss_pred CcchHHHHHHhCCCHHHHH---HHHHhcCCe-ec-Cceeec
Q psy9207 61 SIPNTSLSEFLGVTEQEAA---AIAQAEGWT-VD-KVYTQP 96 (125)
Q Consensus 61 sI~~~~~a~~Lgl~~~e~~---~~~~~~GW~-~d-~~~~~p 96 (125)
.++..++|.|||++.+-+- +-..+.|+- .+ +.+.+.
T Consensus 164 ~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~~~~~~i~i~ 204 (207)
T 2oz6_A 164 KITRQEIGRIVGCSREMVGRVLKSLEEQGLVHVKGKTMVVF 204 (207)
T ss_dssp ECCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEETTEEEEE
T ss_pred ccCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEecCCEEEEE
Confidence 4788899999999976544 445567984 34 444443
No 52
>2kfs_A Conserved hypothetical regulatory protein; WHTH, DNA binding, phosphorylation, DNA-binding protein; NMR {Mycobacterium tuberculosis}
Probab=66.70 E-value=6.9 Score=26.79 Aligned_cols=40 Identities=15% Similarity=0.073 Sum_probs=32.7
Q ss_pred CCcchHHHHHHhCCCHHHHHHHHHhc---CCeecCceeeccCC
Q psy9207 60 SSIPNTSLSEFLGVTEQEAAAIAQAE---GWTVDKVYTQPVKK 99 (125)
Q Consensus 60 ~sI~~~~~a~~Lgl~~~e~~~~~~~~---GW~~d~~~~~p~~~ 99 (125)
.-+++.++|.+||++..-+-+.+.+. ++++++...+|..-
T Consensus 30 ~~LTv~EVAe~LgVs~srV~~LIr~G~L~AVr~Gr~~rVP~~f 72 (148)
T 2kfs_A 30 PTYDLPRVAELLGVPVSKVAQQLREGHLVAVRRAGGVVIPQVF 72 (148)
T ss_dssp CEEEHHHHHHHHTCCHHHHHHHHHTTSCCCEEETTEEEEEGGG
T ss_pred ceEcHHHHHHHhCCCHHHHHHHHHCCCceEEEECCEEEecHHH
Confidence 45789999999999999999998873 77886666777654
No 53
>4ham_A LMO2241 protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, winged helix-turn-helix, four helix bundle; 1.91A {Listeria monocytogenes}
Probab=66.66 E-value=17 Score=23.47 Aligned_cols=53 Identities=9% Similarity=0.166 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCc-chHHHHHHhCCCH---HHHHHHHHhcCCeec
Q psy9207 38 HIMKALQDEVQKRAISLISKAYSSI-PNTSLSEFLGVTE---QEAAAIAQAEGWTVD 90 (125)
Q Consensus 38 ~~i~~l~~~vR~~~~~li~~AY~sI-~~~~~a~~Lgl~~---~e~~~~~~~~GW~~d 90 (125)
|+-.++.+.+|+.|..--=+.=..| +..++|..||+|. -++.......|+..-
T Consensus 14 PlY~QI~~~i~~~I~~G~l~pG~~LPser~La~~~gVSr~tVReAl~~L~~eGlv~~ 70 (134)
T 4ham_A 14 PIYEQIVQKIKEQVVKGVLQEGEKILSIREFASRIGVNPNTVSKAYQELERQEVIIT 70 (134)
T ss_dssp CHHHHHHHHHHHHHHHTSSCTTCEECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred CHHHHHHHHHHHHHHcCCCCCCCCCccHHHHHHHHCCCHHHHHHHHHHHHHCCcEEE
Confidence 3445666777777776555666788 6889999999995 566666778899873
No 54
>2hzt_A Putative HTH-type transcriptional regulator YTCD; DNA-binding protein, HTH-type transcription regulators, structural genomics, PSI-2; HET: CSU MSE; 2.00A {Bacillus subtilis} SCOP: a.4.5.69
Probab=65.90 E-value=12 Score=23.22 Aligned_cols=52 Identities=8% Similarity=0.164 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHh-CCCHHHH---HHHHHhcCCee
Q psy9207 36 IAHIMKALQDEVQKRAISLISKAYSSIPNTSLSEFL-GVTEQEA---AAIAQAEGWTV 89 (125)
Q Consensus 36 ~~~~i~~l~~~vR~~~~~li~~AY~sI~~~~~a~~L-gl~~~e~---~~~~~~~GW~~ 89 (125)
+...+..+.+..|-.|+..+. ...++..+++..+ |++..-+ .+-..+.|+..
T Consensus 4 ~~~~l~~l~~~~~~~IL~~L~--~~~~~~~eLa~~l~~is~~tls~~L~~Le~~GlI~ 59 (107)
T 2hzt_A 4 VEATLEVIGGKWKXVILXHLT--HGKKRTSELKRLMPNITQKMLTQQLRELEADGVIN 59 (107)
T ss_dssp HHHHHHHHCSTTHHHHHHHHT--TCCBCHHHHHHHCTTSCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHcCccHHHHHHHHH--hCCCCHHHHHHHhcCCCHHHHHHHHHHHHHCCCEE
Confidence 455667777788888888885 5789999999999 9997554 44456689986
No 55
>1v92_A NSFL1 cofactor P47; 3-helix bundle, recombination; NMR {Rattus norvegicus} SCOP: a.5.2.3
Probab=64.90 E-value=8.2 Score=20.36 Aligned_cols=27 Identities=19% Similarity=0.420 Sum_probs=23.3
Q ss_pred hHHHHHHhCCCHHHHHHHHHhcCCeec
Q psy9207 64 NTSLSEFLGVTEQEAAAIAQAEGWTVD 90 (125)
Q Consensus 64 ~~~~a~~Lgl~~~e~~~~~~~~GW~~d 90 (125)
+.++....|.+++.+..+....+|.++
T Consensus 9 i~~F~~iTg~~~~~A~~~L~~~~wdle 35 (46)
T 1v92_A 9 LREFVAVTGAEEDRARFFLESAGWDLQ 35 (46)
T ss_dssp HHHHHHHTCCCHHHHHHHHHHTTSCSH
T ss_pred HHHHHHHhCcCHHHHHHHHHHcCCCHH
Confidence 567778889999999999999999986
No 56
>3to7_A Histone acetyltransferase ESA1; MYST family; HET: ALY COA; 1.90A {Saccharomyces cerevisiae} SCOP: d.108.1.1 PDB: 3to6_A* 1fy7_A* 1mja_A* 1mjb_A* 3to9_A* 1mj9_A*
Probab=64.88 E-value=13 Score=27.98 Aligned_cols=54 Identities=11% Similarity=-0.002 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHHhcCCcchHHHHHHhCCCHHHHHHHHHhcCCeec--Cceeec
Q psy9207 43 LQDEVQKRAISLISKAYSSIPNTSLSEFLGVTEQEAAAIAQAEGWTVD--KVYTQP 96 (125)
Q Consensus 43 l~~~vR~~~~~li~~AY~sI~~~~~a~~Lgl~~~e~~~~~~~~GW~~d--~~~~~p 96 (125)
...-=+..++..+...-..|++++++...|+..+|++...+..|+-.- |+.++-
T Consensus 190 Y~~YW~~~i~~~L~~~~~~isi~~is~~Tgi~~~Dii~tL~~l~~l~~~kg~~~i~ 245 (276)
T 3to7_A 190 YRAYWSDTLITLLVEHQKEITIDEISSMTSMTTTDILHTAKTLNILRYYKGQHIIF 245 (276)
T ss_dssp HHHHHHHHHHHHHHHTCSEEEHHHHHHHHCBCHHHHHHHHHHTTCEEEETTEEEEE
T ss_pred HHHHHHHHHHHHHHhcCCceeHHHHHHHhCCCHHHHHHHHHHCCCEEEeCCcEEEE
Confidence 334445555555555557899999999999999999999999999863 554443
No 57
>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B*
Probab=64.70 E-value=10 Score=22.38 Aligned_cols=40 Identities=10% Similarity=0.119 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHhcC---CcchHHHHHHh-CCCHHHHHHHHHhc
Q psy9207 46 EVQKRAISLISKAYS---SIPNTSLSEFL-GVTEQEAAAIAQAE 85 (125)
Q Consensus 46 ~vR~~~~~li~~AY~---sI~~~~~a~~L-gl~~~e~~~~~~~~ 85 (125)
.-|.+|++...+-+. .+.++.+|... |+|+.|+...|.+-
T Consensus 4 ~~R~~Il~~~l~~~~~~~~vdl~~la~~t~G~SGADi~~l~~eA 47 (83)
T 3aji_B 4 RQKRLIFSTITSKMNLSEEVDLEDYVARPDKISGADINSICQES 47 (83)
T ss_dssp HHHHHHHHHHHTTSCBCTTCCTHHHHTSSCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCCcccCHHHHHHHcCCCCHHHHHHHHHHH
Confidence 457788887776653 67788888887 99999999888753
No 58
>1q1h_A TFE, transcription factor E, TFE; TFIIE, transcription initiation, preinitiation complex, RNA polymerase II, transcription bubble; 2.90A {Sulfolobus solfataricus} SCOP: a.4.5.41
Probab=64.65 E-value=5.5 Score=24.75 Aligned_cols=56 Identities=9% Similarity=0.239 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHhCCCHHHH---HHHHHhcCCee
Q psy9207 34 DDIAHIMKALQDEVQKRAISLISKAYSSIPNTSLSEFLGVTEQEA---AAIAQAEGWTV 89 (125)
Q Consensus 34 ~~~~~~i~~l~~~vR~~~~~li~~AY~sI~~~~~a~~Lgl~~~e~---~~~~~~~GW~~ 89 (125)
+.+..++..+.+..|-+|+.++...=..++..++|..||++..-+ .....+.|+..
T Consensus 6 ~~~~~~~~~~~~~~~l~Il~~l~~~g~~~s~~eLa~~lgvs~~tV~~~L~~L~~~GlV~ 64 (110)
T 1q1h_A 6 DLFINLAKSLLGDDVIDVLRILLDKGTEMTDEEIANQLNIKVNDVRKKLNLLEEQGFVS 64 (110)
T ss_dssp THHHHHHHTTSCSTTHHHHHHHHHHCSCBCHHHHHHTTTSCHHHHHHHHHHHHHHTSCE
T ss_pred HHHHHHHHHHcChHHHHHHHHHHHcCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEE
Confidence 344555556556677788888766555799999999999997554 44455578853
No 59
>2pjp_A Selenocysteine-specific elongation factor; SELB, protein-RNA complex, elongation factor, winged- helix, bulge, translation/RNA complex; 2.30A {Escherichia coli}
Probab=64.21 E-value=25 Score=22.36 Aligned_cols=42 Identities=17% Similarity=0.151 Sum_probs=32.7
Q ss_pred HHHHHHHHHHhcCCcchHHHHHHhCCCHH---HHHHHHHhcCCeec
Q psy9207 48 QKRAISLISKAYSSIPNTSLSEFLGVTEQ---EAAAIAQAEGWTVD 90 (125)
Q Consensus 48 R~~~~~li~~AY~sI~~~~~a~~Lgl~~~---e~~~~~~~~GW~~d 90 (125)
++.+...+... ..|++.++...||+|-. .+.+|.-..|++.-
T Consensus 68 ~~~l~~~~~~~-~~it~ae~Rd~lg~sRK~ai~lLE~~Dr~g~TrR 112 (121)
T 2pjp_A 68 ANMIRDLDQEC-GSTCAADFRDRLGVGRKLAIQILEYFDRIGFTRR 112 (121)
T ss_dssp HHHHHHHHHHH-SSEEHHHHHHHHTSCHHHHHHHHHHHHHHTSEEE
T ss_pred HHHHHHHHHHC-CCccHHHHHHHHCCcHHHHHHHHHHHhhcCCeEe
Confidence 33333333333 89999999999999987 88889999999983
No 60
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=64.18 E-value=8.1 Score=30.92 Aligned_cols=70 Identities=14% Similarity=0.199 Sum_probs=48.0
Q ss_pred hHHHH-HHHHHHHHHcCCchHHHHHhcc--CC--cHHH-HHHHHHHHHHHHHHHHHH----HHHhc--CCcchHHHHHHh
Q psy9207 4 PEIGQ-VWEVGKHLWNGNYPSIYSTLKR--TW--SDDI-AHIMKALQDEVQKRAISL----ISKAY--SSIPNTSLSEFL 71 (125)
Q Consensus 4 ~~l~~-~~~l~~~l~~~~y~~v~~~~~~--~~--s~~~-~~~i~~l~~~vR~~~~~l----i~~AY--~sI~~~~~a~~L 71 (125)
|.|.. -..|-+++..||..+|-++++. .| ...+ -.++..++..+=+..++- ...+| +.|++++++.-|
T Consensus 293 ~~L~~~y~~L~~AVr~Gdl~~F~~~L~~~~~~f~~~gily~LlerLr~~v~RnLirkv~~~~~~~~~~srI~l~~i~~aL 372 (455)
T 3t5v_B 293 QETIDNWSVLYKHVRYGNIQGVSLWLRQNERHLCARQLLIVLLEKLPMVTYRNLIKTVIKSWTTEWGQNKLPYSLIERVL 372 (455)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHTTTTCCCEEEHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHhHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCeeeHHHHHHHH
Confidence 56766 5679999999999999999985 22 1222 345555555433333333 35668 899999999998
Q ss_pred CC
Q psy9207 72 GV 73 (125)
Q Consensus 72 gl 73 (125)
++
T Consensus 373 ~~ 374 (455)
T 3t5v_B 373 QL 374 (455)
T ss_dssp HH
T ss_pred hh
Confidence 74
No 61
>3gbg_A TCP pilus virulence regulatory protein; cupin, helix-turn-helix, ARAC family, activator, DNA-binding transcription, transcription regulation; HET: PAM; 1.90A {Vibrio cholerae}
Probab=64.06 E-value=13 Score=26.58 Aligned_cols=41 Identities=7% Similarity=0.033 Sum_probs=32.9
Q ss_pred HHHHHHHHHhcCC-cchHHHHHHhCCCHHHHHHHHHhcCCee
Q psy9207 49 KRAISLISKAYSS-IPNTSLSEFLGVTEQEAAAIAQAEGWTV 89 (125)
Q Consensus 49 ~~~~~li~~AY~s-I~~~~~a~~Lgl~~~e~~~~~~~~GW~~ 89 (125)
+++.+.|..-|.. ++++++|..+|+|..-+...+++-|=+.
T Consensus 172 ~~~~~~i~~~~~~~~sl~~lA~~~~~S~~~l~r~fk~~G~t~ 213 (276)
T 3gbg_A 172 EKISCLVKSDITRNWRWADICGELRTNRMILKKELESRGVKF 213 (276)
T ss_dssp HHHHHHHHHTTTSCCCHHHHHHHHTCCHHHHHHHHHTTTCCH
T ss_pred HHHHHHHHHhhcCCCCHHHHHHHHCcCHHHHHHHHHHcCCCH
Confidence 4667777777766 9999999999999988888876556554
No 62
>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus}
Probab=63.13 E-value=28 Score=23.30 Aligned_cols=53 Identities=15% Similarity=0.194 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHh-------cCCcchHHHHHHhCCCHHHHHHH---HHhcCCee-c-Cceeec
Q psy9207 44 QDEVQKRAISLISKA-------YSSIPNTSLSEFLGVTEQEAAAI---AQAEGWTV-D-KVYTQP 96 (125)
Q Consensus 44 ~~~vR~~~~~li~~A-------Y~sI~~~~~a~~Lgl~~~e~~~~---~~~~GW~~-d-~~~~~p 96 (125)
....++|++..+-.- --.++..++|.|||++.+-+... .++.|+-- + +.+.++
T Consensus 139 ~~~~~~Rl~~~L~~~~~~~~~~~~~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~~~~~~i~i~ 203 (216)
T 4ev0_A 139 FEEARNRVAYALLKLLRQGLGPLFQIRHHELAALAGTSRETVSRVLHALAEEGVVRLGPGTVEVR 203 (216)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCSEEECCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEETTEEEES
T ss_pred cCCHHHHHHHHHHHHhhcCCccCCCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEecCCEEEEe
Confidence 356677777776431 23568899999999997655444 45578864 4 444444
No 63
>1bl0_A Protein (multiple antibiotic resistance protein), DNA (5'- D(*CP*CP*GP*AP*TP*GP*CP*CP*AP*CP*GP*TP*TP*TP*TP*GP*CP*TP*AP *AP*AP*TP* CP*C)-3')...; transcriptional activator; HET: DNA; 2.30A {Escherichia coli} SCOP: a.4.1.8 a.4.1.8 PDB: 1xs9_A
Probab=62.86 E-value=16 Score=23.32 Aligned_cols=40 Identities=15% Similarity=0.217 Sum_probs=28.3
Q ss_pred HHHHHHHHHhcC-CcchHHHHHHhCCCHHHHHHHHHhc-CCe
Q psy9207 49 KRAISLISKAYS-SIPNTSLSEFLGVTEQEAAAIAQAE-GWT 88 (125)
Q Consensus 49 ~~~~~li~~AY~-sI~~~~~a~~Lgl~~~e~~~~~~~~-GW~ 88 (125)
.++.+.|...|. .++++++|..+|+|...+.....+. |=+
T Consensus 14 ~~~~~~i~~~~~~~~sl~~lA~~~~~S~~~l~r~fk~~~G~s 55 (129)
T 1bl0_A 14 HSILDWIEDNLESPLSLEKVSERSGYSKWHLQRMFKKETGHS 55 (129)
T ss_dssp HHHHHHHHTTTTSCCCCHHHHHHSSSCHHHHHHHHHHHHSSC
T ss_pred HHHHHHHHHccCCCCCHHHHHHHHCcCHHHHHHHHHHHHCcC
Confidence 445556666654 6999999999999987776665543 544
No 64
>3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomi 2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A*
Probab=62.82 E-value=34 Score=23.38 Aligned_cols=50 Identities=14% Similarity=0.144 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHhcC----------CcchHHHHHHhCCCHHHHHHH---HHhcCCeec-Cceeec
Q psy9207 47 VQKRAISLISKAYS----------SIPNTSLSEFLGVTEQEAAAI---AQAEGWTVD-KVYTQP 96 (125)
Q Consensus 47 vR~~~~~li~~AY~----------sI~~~~~a~~Lgl~~~e~~~~---~~~~GW~~d-~~~~~p 96 (125)
.++|++..+-.-.. .++..++|.|||++.+-+-.. ..+.|+..+ +.+.+.
T Consensus 154 ~~~Rl~~~L~~~~~~~~~~~~~~l~~t~~~iA~~lg~sr~tvsR~l~~L~~~gi~~~~~~i~I~ 217 (237)
T 3fx3_A 154 GAQRVAEFLLELCDCDTGACEVTLPYDKMLIAGRLGMKPESLSRAFSRLKAAGVTVKRNHAEIE 217 (237)
T ss_dssp HHHHHHHHHHHHCCC-----EEECCSCTHHHHHHTTCCHHHHHHHHHHHGGGTEECCTTEEEES
T ss_pred HHHHHHHHHHHHhhhcCCCeEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHCCeEeeCCEEEEc
Confidence 46677766665332 244688999999997655444 555798655 445444
No 65
>3f6v_A Possible transcriptional regulator, ARSR family protein; probable transcriptional repressor ARSR family, structural genomics, PSI-2; 1.48A {Rhodococcus SP}
Probab=62.16 E-value=8.9 Score=25.73 Aligned_cols=50 Identities=8% Similarity=0.195 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHhCCCHHHHHHH---HHhcCCee
Q psy9207 38 HIMKALQDEVQKRAISLISKAYSSIPNTSLSEFLGVTEQEAAAI---AQAEGWTV 89 (125)
Q Consensus 38 ~~i~~l~~~vR~~~~~li~~AY~sI~~~~~a~~Lgl~~~e~~~~---~~~~GW~~ 89 (125)
.++..|.+..|.+|+.++. -...++.+++..||++..-+-.. ..+.|+..
T Consensus 50 ~~l~aL~~p~R~~IL~~L~--~~~~t~~eLa~~lgls~stvs~hL~~L~~aGlV~ 102 (151)
T 3f6v_A 50 DQLEVAAEPTRRRLVQLLT--SGEQTVNNLAAHFPASRSAISQHLRVLTEAGLVT 102 (151)
T ss_dssp CHHHHHTSHHHHHHHHHGG--GCCEEHHHHHTTSSSCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHhCCHHHHHHHHHHH--hCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEE
Confidence 5678899999999999997 47799999999999997655444 45579886
No 66
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=61.51 E-value=24 Score=21.23 Aligned_cols=44 Identities=16% Similarity=0.300 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHhcC---CcchHHHHHHhCCCHHHHHHHH---HhcCCee
Q psy9207 45 DEVQKRAISLISKAYS---SIPNTSLSEFLGVTEQEAAAIA---QAEGWTV 89 (125)
Q Consensus 45 ~~vR~~~~~li~~AY~---sI~~~~~a~~Lgl~~~e~~~~~---~~~GW~~ 89 (125)
+.+.++|+.++.. .. .++..++|.-||++...+.... .+.|+-.
T Consensus 9 ~~~~~~IL~~L~~-~~pg~~~t~~eLA~~Lgvsr~tV~~~L~~Le~~G~I~ 58 (81)
T 1qbj_A 9 QDQEQRILKFLEE-LGEGKATTAHDLSGKLGTPKKEINRVLYSLAKKGKLQ 58 (81)
T ss_dssp HHHHHHHHHHHHH-HCTTCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred hHHHHHHHHHHHH-cCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEE
Confidence 4456777777774 45 8999999999999986666654 3468875
No 67
>2o3f_A Putative HTH-type transcriptional regulator YBBH; APC85504, putative transcriptional regulator YBBH; HET: MLY; 1.75A {Bacillus subtilis} SCOP: a.4.1.20
Probab=61.39 E-value=13 Score=23.54 Aligned_cols=28 Identities=7% Similarity=0.151 Sum_probs=22.5
Q ss_pred CcchHHHHHHhCCCHHHHHHHHHhcCCe
Q psy9207 61 SIPNTSLSEFLGVTEQEAAAIAQAEGWT 88 (125)
Q Consensus 61 sI~~~~~a~~Lgl~~~e~~~~~~~~GW~ 88 (125)
..++.++|.-.|+|+.-+..||++.|-.
T Consensus 39 ~~si~elA~~~~vS~aTv~Rf~kklG~~ 66 (111)
T 2o3f_A 39 ESTVNEISALANSSDAAVIRLCXSLGLK 66 (111)
T ss_dssp TCCHHHHHHHTTCCHHHHHHHHHHTTCS
T ss_pred hcCHHHHHHHHCCCHHHHHHHHHHcCCC
Confidence 4677888888888888888888887765
No 68
>1cv8_A Staphopain; cysteine protease, thiol protease, papain family; HET: E64; 1.75A {Staphylococcus aureus} SCOP: d.3.1.1
Probab=61.35 E-value=13 Score=26.09 Aligned_cols=51 Identities=16% Similarity=0.264 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHhCCCHHHHHHHHHhcCCeec
Q psy9207 39 IMKALQDEVQKRAISLISKAYSSIPNTSLSEFLGVTEQEAAAIAQAEGWTVD 90 (125)
Q Consensus 39 ~i~~l~~~vR~~~~~li~~AY~sI~~~~~a~~Lgl~~~e~~~~~~~~GW~~d 90 (125)
++.....+=+-..=+.+...|.++|.+++. .-|++..|++++++++|=.++
T Consensus 32 ilN~~~~~~~~~A~~imr~~yPn~S~~~l~-~~~~t~~e~iky~~s~g~~~~ 82 (174)
T 1cv8_A 32 LLNATYNTNKYHAEAVMRFLHPNLQGQQFQ-FTGLTPREMIYFGQTQGRSPQ 82 (174)
T ss_dssp HHHHHHTCCCCCHHHHHHHHCSSCCHHHHH-HCCCCHHHHHHHHHHTTCCCE
T ss_pred HHHhhhccCcCCHHHHHHHHCCCCCHHHHh-hcCCCHHHHHHHHHHcCCChh
Confidence 333333333334556888999999999999 999999999999999887665
No 69
>2p4w_A Transcriptional regulatory protein ARSR family; archaea, PHR, heat shock, transcriptional regulation, winged DNA binding; 2.60A {Pyrococcus furiosus} SCOP: a.4.5.64
Probab=61.05 E-value=29 Score=24.32 Aligned_cols=53 Identities=19% Similarity=0.314 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHhCCCHHHHHHH---HHhcCCee
Q psy9207 35 DIAHIMKALQDEVQKRAISLISKAYSSIPNTSLSEFLGVTEQEAAAI---AQAEGWTV 89 (125)
Q Consensus 35 ~~~~~i~~l~~~vR~~~~~li~~AY~sI~~~~~a~~Lgl~~~e~~~~---~~~~GW~~ 89 (125)
.+..+...|.+..|-+|+.++. ...++..+++..||++..-+-.. ..+.|+..
T Consensus 4 ~~~~ilkaL~~~~rl~IL~~L~--~~~~s~~eLa~~l~is~stvs~hLk~Le~~GLV~ 59 (202)
T 2p4w_A 4 ELNRLLDVLGNETRRRILFLLT--KRPYFVSELSRELGVGQKAVLEHLRILEEAGLIE 59 (202)
T ss_dssp HHHHHHHHHHSHHHHHHHHHHH--HSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred hHHHHHHHhCCHHHHHHHHHHH--hCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCceE
Confidence 4566778889999999999995 57899999999999997554443 45568875
No 70
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=60.96 E-value=23 Score=20.95 Aligned_cols=44 Identities=11% Similarity=0.174 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHhcCCcchHHHHHHhCCCHHHHHH---HHHhcCCee
Q psy9207 45 DEVQKRAISLISKAYSSIPNTSLSEFLGVTEQEAAA---IAQAEGWTV 89 (125)
Q Consensus 45 ~~vR~~~~~li~~AY~sI~~~~~a~~Lgl~~~e~~~---~~~~~GW~~ 89 (125)
...+.+++.++.. ...++..+++..+|++..-+-. -..+.||..
T Consensus 19 ~~~~~~il~~l~~-~~~~s~~ela~~l~is~~tv~~~l~~L~~~glv~ 65 (109)
T 1sfx_A 19 KPSDVRIYSLLLE-RGGMRVSEIARELDLSARFVRDRLKVLLKRGFVR 65 (109)
T ss_dssp CHHHHHHHHHHHH-HCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred CHHHHHHHHHHHH-cCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEE
Confidence 3445667777754 4679999999999999755444 455679976
No 71
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50
Probab=59.80 E-value=25 Score=20.88 Aligned_cols=41 Identities=10% Similarity=0.125 Sum_probs=29.2
Q ss_pred HHHHHHHHHhcCCcchHHHHHHhCCCHHHH---HHHHHhcCCee
Q psy9207 49 KRAISLISKAYSSIPNTSLSEFLGVTEQEA---AAIAQAEGWTV 89 (125)
Q Consensus 49 ~~~~~li~~AY~sI~~~~~a~~Lgl~~~e~---~~~~~~~GW~~ 89 (125)
..++..+......++..++|..+|++..-+ .+...+.||-.
T Consensus 24 ~~~l~~l~~~~~~~t~~ela~~l~is~~tv~~~l~~L~~~g~v~ 67 (109)
T 2d1h_A 24 VAVLLKMVEIEKPITSEELADIFKLSKTTVENSLKKLIELGLVV 67 (109)
T ss_dssp HHHHHHHHHHCSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeE
Confidence 344444445577899999999999997554 44455679986
No 72
>2lnb_A Z-DNA-binding protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, immune system; NMR {Homo sapiens}
Probab=59.54 E-value=27 Score=21.29 Aligned_cols=40 Identities=13% Similarity=0.195 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHhcCCcchHHHHHHhCCCHHHHHHHHHh
Q psy9207 45 DEVQKRAISLISKAYSSIPNTSLSEFLGVTEQEAAAIAQA 84 (125)
Q Consensus 45 ~~vR~~~~~li~~AY~sI~~~~~a~~Lgl~~~e~~~~~~~ 84 (125)
+...++|++.+..|=.=++..++|..+|++..|+.+...+
T Consensus 18 ~d~eekVLe~LkeaG~PlkageIae~~GvdKKeVdKaik~ 57 (80)
T 2lnb_A 18 GHLEQRILQVLTEAGSPVKLAQLVKECQAPKRELNQVLYR 57 (80)
T ss_dssp HHHHHHHHHHHHHHTSCEEHHHHHHHHTSCHHHHHHHHHH
T ss_pred chHHHHHHHHHHHcCCCCCHHHHHHHHCCCHHHHHHHHHH
Confidence 4567899999999999999999999999999888777554
No 73
>3chm_A COP9 signalosome complex subunit 7; heat/ARM repeats, winged helix motif, developmental protein, phosphoprotein; 1.50A {Arabidopsis thaliana}
Probab=59.16 E-value=40 Score=23.12 Aligned_cols=71 Identities=10% Similarity=0.095 Sum_probs=51.1
Q ss_pred HHHHHHHHHHcCCchHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHhCCC-HHHHHHHHH
Q psy9207 8 QVWEVGKHLWNGNYPSIYSTLKRTWSDDIAHIMKALQDEVQKRAISLISKAYSSIPNTSLSEFLGVT-EQEAAAIAQ 83 (125)
Q Consensus 8 ~~~~l~~~l~~~~y~~v~~~~~~~~s~~~~~~i~~l~~~vR~~~~~li~~AY~sI~~~~~a~~Lgl~-~~e~~~~~~ 83 (125)
.++.|.+.+-.|+|..+-+..+..+ + +...+..++|--++-.+...-+.|+.+++++-|+++ .+|+..++.
T Consensus 61 ~~~~LL~iF~~G~~~~y~~~~~~~p-~----L~~~~~~KlrlLtL~sLa~~~~~lsy~~I~~~l~i~~~~evE~lvI 132 (169)
T 3chm_A 61 VYLDLLRLFAHGTWGDYKCNATRLP-H----LSPDQILKLKQLTVLTLAESNKVLPYDTLMVELDVSNVRELEDFLI 132 (169)
T ss_dssp HHHHHHHHHHHCCHHHHHHHGGGSC-C----CCHHHHHHHHHHHHHHHHHHCSEEEHHHHHHHHTCCSHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHhHHhCc-c----hHHHHHHHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCHHHHHHHHH
Confidence 3677888888888887544332221 1 125666777776666555568999999999999999 888888766
No 74
>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=59.01 E-value=31 Score=21.74 Aligned_cols=42 Identities=12% Similarity=0.093 Sum_probs=31.6
Q ss_pred HHHHHHHHHHhcCCcchHHHHHHhCCCHHHH---HHHHHhcCCee
Q psy9207 48 QKRAISLISKAYSSIPNTSLSEFLGVTEQEA---AAIAQAEGWTV 89 (125)
Q Consensus 48 R~~~~~li~~AY~sI~~~~~a~~Lgl~~~e~---~~~~~~~GW~~ 89 (125)
.-.++..+......++..++|..+|++..-+ ++-..++||..
T Consensus 37 ~~~iL~~l~~~~~~~~~~~la~~l~i~~~~vs~~l~~Le~~glv~ 81 (147)
T 2hr3_A 37 QLVVLGAIDRLGGDVTPSELAAAERMRSSNLAALLRELERGGLIV 81 (147)
T ss_dssp HHHHHHHHHHTTSCBCHHHHHHHTTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHhCCChhhHHHHHHHHHHCCCEe
Confidence 3456667766578899999999999997554 44455689986
No 75
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=56.19 E-value=18 Score=22.08 Aligned_cols=42 Identities=17% Similarity=0.139 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHhcCCcchHHHHHHhCCCHHHHHHHHHh---cCCee
Q psy9207 46 EVQKRAISLISKAYSSIPNTSLSEFLGVTEQEAAAIAQA---EGWTV 89 (125)
Q Consensus 46 ~vR~~~~~li~~AY~sI~~~~~a~~Lgl~~~e~~~~~~~---~GW~~ 89 (125)
.++++|+.++.+ -. ++..++|+-||++...+...... .|-..
T Consensus 17 ~~~~~IL~lL~~-~g-~sa~eLAk~LgiSk~aVr~~L~~Le~eG~I~ 61 (82)
T 1oyi_A 17 EIVCEAIKTIGI-EG-ATAAQLTRQLNMEKREVNKALYDLQRSAMVY 61 (82)
T ss_dssp HHHHHHHHHHSS-ST-EEHHHHHHHSSSCHHHHHHHHHHHHHHTSSE
T ss_pred HHHHHHHHHHHH-cC-CCHHHHHHHHCcCHHHHHHHHHHHHHCCCEE
Confidence 577888888874 34 99999999999999887777554 36555
No 76
>2pq8_A Probable histone acetyltransferase MYST1; MOF, structural genomics, structural genomics consortium, SGC; HET: COA; 1.45A {Homo sapiens} PDB: 2giv_A* 3qah_A* 2y0m_A* 3toa_A* 3tob_A*
Probab=56.12 E-value=11 Score=28.33 Aligned_cols=49 Identities=8% Similarity=-0.004 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHhcCCcchHHHHHHhCCCHHHHHHHHHhcCCeec--Cceee
Q psy9207 47 VQKRAISLISKAYSSIPNTSLSEFLGVTEQEAAAIAQAEGWTVD--KVYTQ 95 (125)
Q Consensus 47 vR~~~~~li~~AY~sI~~~~~a~~Lgl~~~e~~~~~~~~GW~~d--~~~~~ 95 (125)
=+..+++.+.+.-..|++++++...|+..+|++...+..|+-.. |+.++
T Consensus 194 W~~~il~~L~~~~~~isi~~is~~T~i~~~Dii~tL~~l~~l~~~kg~~~i 244 (278)
T 2pq8_A 194 WSWVLLENLRDFRGTLSIKDLSQMTSITQNDIISTLQSLNMVKYWKGQHVI 244 (278)
T ss_dssp HHHHHHHHTC-------CHHHHHHHCBCHHHHHHHHHHTTCEEC----CEE
T ss_pred HHHHHHHHHHHcCCCccHHHHHHHhCCCHHHHHHHHHHCCCEEEeCCcEEE
Confidence 34444444444445899999999999999999999999998863 44433
No 77
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=56.01 E-value=25 Score=25.95 Aligned_cols=80 Identities=13% Similarity=0.077 Sum_probs=51.1
Q ss_pred HHHHHHHHHHcCCchHHHHHhcc--CCcHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHhCCCHHHHHHHHH-h
Q psy9207 8 QVWEVGKHLWNGNYPSIYSTLKR--TWSDDIAHIMKALQDEVQKRAISLISKAYSSIPNTSLSEFLGVTEQEAAAIAQ-A 84 (125)
Q Consensus 8 ~~~~l~~~l~~~~y~~v~~~~~~--~~s~~~~~~i~~l~~~vR~~~~~li~~AY~sI~~~~~a~~Lgl~~~e~~~~~~-~ 84 (125)
.++.+..++-.|+..+++..++. .-.+....++..|...+|.-..-..... .. +.+.+++.+|+.+.....+.. .
T Consensus 213 ~if~l~~ai~~~d~~~al~~l~~l~~~g~~~~~il~~l~~~~r~l~~~~~~~~-~g-~~~~i~~~l~i~~~~~~~~~~~~ 290 (343)
T 1jr3_D 213 TPFHWVDALLMGKSKRALHILQQLRLEGSEPVILLRTLQRELLLLVNLKRQSA-HT-PLRALFDKHRVWQNRRGMMGEAL 290 (343)
T ss_dssp CHHHHHHHHTTSCHHHHHHHHTSSTTTTCCHHHHHHHHHHHHHHHHHHHTCSS-SS-CHHHHHHHHTCCSSHHHHHHHHH
T ss_pred CHHHHHHHHHCCCHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHHHHHh-CC-CHHHHHHHcCCCHHHHHHHHHHH
Confidence 57899999999999999998886 2344556677777777776433211111 12 677788888886544333322 2
Q ss_pred cCCee
Q psy9207 85 EGWTV 89 (125)
Q Consensus 85 ~GW~~ 89 (125)
++|+.
T Consensus 291 ~~~s~ 295 (343)
T 1jr3_D 291 NRLSQ 295 (343)
T ss_dssp HHSCH
T ss_pred HcCCH
Confidence 45665
No 78
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=55.64 E-value=21 Score=23.26 Aligned_cols=44 Identities=11% Similarity=0.238 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHhcCCcchHHHHHHhCCCHHHHHHHHH---hcCCee
Q psy9207 45 DEVQKRAISLISKAYSSIPNTSLSEFLGVTEQEAAAIAQ---AEGWTV 89 (125)
Q Consensus 45 ~~vR~~~~~li~~AY~sI~~~~~a~~Lgl~~~e~~~~~~---~~GW~~ 89 (125)
+..+.+++.++..- ..++..++|..+|+|...+...+. +.|.-.
T Consensus 7 d~~d~~il~~L~~~-~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~ 53 (152)
T 2cg4_A 7 DNLDRGILEALMGN-ARTAYAELAKQFGVSPETIHVRVEKMKQAGIIT 53 (152)
T ss_dssp CHHHHHHHHHHHHC-TTSCHHHHHHHHTSCHHHHHHHHHHHHHHTSEE
T ss_pred CHHHHHHHHHHHHc-CCCCHHHHHHHHCcCHHHHHHHHHHHHHcCCcc
Confidence 34566788777653 789999999999999866655443 457654
No 79
>2ou2_A Histone acetyltransferase htatip; structural genomics, structural genomics consortium, SGC; HET: ALY ACO; 2.30A {Homo sapiens}
Probab=55.29 E-value=17 Score=27.37 Aligned_cols=37 Identities=14% Similarity=0.125 Sum_probs=30.0
Q ss_pred CCcchHHHHHHhCCCHHHHHHHHHhcCCeec--Cceeec
Q psy9207 60 SSIPNTSLSEFLGVTEQEAAAIAQAEGWTVD--KVYTQP 96 (125)
Q Consensus 60 ~sI~~~~~a~~Lgl~~~e~~~~~~~~GW~~d--~~~~~p 96 (125)
..|++++++...|+..+|++...+..|.-.- |+.++-
T Consensus 211 ~~isi~~is~~T~i~~~Dii~tL~~l~~l~~~kg~~~i~ 249 (280)
T 2ou2_A 211 PQITINEISEITSIKKEDVISTLQYLNLINYYKGQYILT 249 (280)
T ss_dssp -CCBHHHHHHHHCBCHHHHHHHHHHTTCCCBCSSSBBC-
T ss_pred CceeHHHHHHHhCCCHHHHHHHHHHCCcEEEECCeEEEE
Confidence 4899999999999999999999999888753 554443
No 80
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=54.34 E-value=24 Score=22.84 Aligned_cols=43 Identities=12% Similarity=0.131 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHhcCCcchHHHHHHhCCCHHHHHHHH---HhcCCee
Q psy9207 46 EVQKRAISLISKAYSSIPNTSLSEFLGVTEQEAAAIA---QAEGWTV 89 (125)
Q Consensus 46 ~vR~~~~~li~~AY~sI~~~~~a~~Lgl~~~e~~~~~---~~~GW~~ 89 (125)
....+++.++.. ...++..++|..||++...+...+ .+.|+-.
T Consensus 5 ~~d~~il~~L~~-~~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~ 50 (144)
T 2cfx_A 5 QIDLNIIEELKK-DSRLSMRELGRKIKLSPPSVTERVRQLESFGIIK 50 (144)
T ss_dssp HHHHHHHHHHHH-CSCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHHH-cCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeE
Confidence 455678887754 478999999999999986665554 4468864
No 81
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=54.11 E-value=23 Score=22.99 Aligned_cols=44 Identities=23% Similarity=0.305 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHhcCCcchHHHHHHhCCCHHHHHHHH---HhcCCee
Q psy9207 45 DEVQKRAISLISKAYSSIPNTSLSEFLGVTEQEAAAIA---QAEGWTV 89 (125)
Q Consensus 45 ~~vR~~~~~li~~AY~sI~~~~~a~~Lgl~~~e~~~~~---~~~GW~~ 89 (125)
+....+++.++.. -..++..++|..||+|...+.... .+.|+-.
T Consensus 8 d~~d~~il~~L~~-~~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~ 54 (151)
T 2dbb_A 8 DRVDMQLVKILSE-NSRLTYRELADILNTTRQRIARRIDKLKKLGIIR 54 (151)
T ss_dssp CHHHHHHHHHHHH-CTTCCHHHHHHHTTSCHHHHHHHHHHHHHHTSEE
T ss_pred CHHHHHHHHHHHH-cCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEE
Confidence 4456678887765 478999999999999986655544 3467765
No 82
>3rkx_A Biotin-[acetyl-COA-carboxylase] ligase; biotin protein ligase, 3 domains, enzyme DNA binding, biotin coupling domains; 2.10A {Staphylococcus aureus} PDB: 3rir_A* 3rkw_A 3rky_A* 3v7c_A* 3v7s_A* 3v8j_A 3v7r_A 3v8k_A* 3v8l_A* 4dq2_A*
Probab=53.61 E-value=38 Score=25.53 Aligned_cols=45 Identities=20% Similarity=0.360 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHh-cCCcchHHHHHHhCCCHHHHHHHH---HhcCCeec
Q psy9207 46 EVQKRAISLISKA-YSSIPNTSLSEFLGVTEQEAAAIA---QAEGWTVD 90 (125)
Q Consensus 46 ~vR~~~~~li~~A-Y~sI~~~~~a~~Lgl~~~e~~~~~---~~~GW~~d 90 (125)
..|+++++++..+ -..+|-+++|..||+|...+-+.+ ++.|..++
T Consensus 3 ~~~~~iL~~L~~~~g~~~Sg~eLa~~lgvSr~aV~k~i~~L~~~G~~i~ 51 (323)
T 3rkx_A 3 KYSQDVLQLLYKNKPNYISGQSIAESLNISRTAVKKVIDQLKLEGCKID 51 (323)
T ss_dssp CHHHHHHHHHHHHTTSCBCHHHHHHHHTSCHHHHHHHHHHHHHTTCEEE
T ss_pred hHHHHHHHHHHhCCCCccCHHHHHHHHCCCHHHHHHHHHHHHhcCCeEE
Confidence 4688999999765 468999999999999987666554 45699775
No 83
>1g2h_A Transcriptional regulatory protein TYRR homolog; protein structure, , DNA-binding domain, helix- turn-helix motif; NMR {Haemophilus influenzae} SCOP: a.4.1.12
Probab=52.90 E-value=28 Score=19.40 Aligned_cols=36 Identities=17% Similarity=0.180 Sum_probs=25.3
Q ss_pred HHHHHHHHHHhcCCcchHHHHHHhCCCHHHHHHHHHhcC
Q psy9207 48 QKRAISLISKAYSSIPNTSLSEFLGVTEQEAAAIAQAEG 86 (125)
Q Consensus 48 R~~~~~li~~AY~sI~~~~~a~~Lgl~~~e~~~~~~~~G 86 (125)
|+-|...+.++ . +...+|..||++..-+-.-..+.|
T Consensus 23 r~~I~~aL~~~-g--n~~~aA~~LGIsr~tL~rklkk~g 58 (61)
T 1g2h_A 23 AQVLKLFYAEY-P--STRKLAQRLGVSHTAIANKLKQYG 58 (61)
T ss_dssp HHHHHHHHHHS-C--SHHHHHHHTTSCTHHHHHHHHTTT
T ss_pred HHHHHHHHHHh-C--CHHHHHHHhCCCHHHHHHHHHHhC
Confidence 44555666665 4 567999999999877766665544
No 84
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=52.78 E-value=33 Score=20.11 Aligned_cols=20 Identities=25% Similarity=0.433 Sum_probs=15.3
Q ss_pred cCCcchHHHHHHhCCCHHHH
Q psy9207 59 YSSIPNTSLSEFLGVTEQEA 78 (125)
Q Consensus 59 Y~sI~~~~~a~~Lgl~~~e~ 78 (125)
+.-.+..++|..||++..-+
T Consensus 34 ~~g~s~~eIA~~l~is~~tV 53 (82)
T 1je8_A 34 AQGLPNKMIARRLDITESTV 53 (82)
T ss_dssp TTTCCHHHHHHHHTSCHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHH
Confidence 56788888888998886443
No 85
>1j9i_A GPNU1 DBD;, terminase small subunit; DNA binding domain, homodimer, viral assembly, winged helix-turn-helix, viral protein; NMR {Enterobacteria phage lambda} SCOP: a.6.1.5
Probab=52.68 E-value=8 Score=22.11 Aligned_cols=23 Identities=9% Similarity=0.280 Sum_probs=19.4
Q ss_pred cchHHHHHHhCCCHHHHHHHHHh
Q psy9207 62 IPNTSLSEFLGVTEQEAAAIAQA 84 (125)
Q Consensus 62 I~~~~~a~~Lgl~~~e~~~~~~~ 84 (125)
++..++|.+||+|..-+..+..+
T Consensus 3 lt~~e~a~~LgvS~~Tl~rw~~~ 25 (68)
T 1j9i_A 3 VNKKQLADIFGASIRTIQNWQEQ 25 (68)
T ss_dssp EEHHHHHHHTTCCHHHHHHHTTT
T ss_pred cCHHHHHHHHCcCHHHHHHHHHC
Confidence 67889999999999888877653
No 86
>1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1
Probab=52.03 E-value=52 Score=22.21 Aligned_cols=45 Identities=11% Similarity=0.274 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHhc--------------CCcchHHHHHHhCCCHHHHH---HHHHhcCCe
Q psy9207 44 QDEVQKRAISLISKAY--------------SSIPNTSLSEFLGVTEQEAA---AIAQAEGWT 88 (125)
Q Consensus 44 ~~~vR~~~~~li~~AY--------------~sI~~~~~a~~Lgl~~~e~~---~~~~~~GW~ 88 (125)
....++|++..+..-. -.++..++|.|||++.+-+. +-..+.|+-
T Consensus 132 ~~~~~~Rl~~~L~~l~~~~~~~~~~~~~~~~~~t~~~lA~~lG~sr~tvsR~l~~L~~~g~I 193 (222)
T 1ft9_A 132 FHDIKQRIAGFFIDHANTTGRQTQGGVIVSVDFTVEEIANLIGSSRQTTSTALNSLIKEGYI 193 (222)
T ss_dssp THHHHHHHHHHHHHTCBCCCSCC--CCCCEECCCHHHHHHHHCSCHHHHHHHHHHHHHTTSS
T ss_pred cCCHHHHHHHHHHHHHHHhCCCCCCcEEEeccCCHHHHHHHhCCcHHHHHHHHHHHHHCCcE
Confidence 3567788887765432 13788999999999975544 445567984
No 87
>1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2
Probab=51.96 E-value=53 Score=22.44 Aligned_cols=51 Identities=16% Similarity=0.195 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHhc--------CCcchHHHHHHhCCCHHHHH---HHHHhcCCe-ec-Cceeec
Q psy9207 46 EVQKRAISLISKAY--------SSIPNTSLSEFLGVTEQEAA---AIAQAEGWT-VD-KVYTQP 96 (125)
Q Consensus 46 ~vR~~~~~li~~AY--------~sI~~~~~a~~Lgl~~~e~~---~~~~~~GW~-~d-~~~~~p 96 (125)
..++|++..+..-. -.++..++|.|||++.+-+. +-..+.|+- ++ +.+.+.
T Consensus 163 ~~~~Rl~~~L~~l~~~~~~~~~~~~t~~~lA~~lG~sr~tvsR~l~~l~~~glI~~~~~~i~I~ 226 (232)
T 1zyb_A 163 DLKSKIIRFFLSHCEKPQGEKTFKVKMDDLARCLDDTRLNISKTLNELQDNGLIELHRKEILIP 226 (232)
T ss_dssp SHHHHHHHHHHTTCSSSSSCEEEECCHHHHHHHHTSCHHHHHHHHHHHHHTTSCEEETTEEEES
T ss_pred CHHHHHHHHHHHHHhhcCCeEEecCCHHHHHHHhCCChhHHHHHHHHHHHCCCEEecCCEEEEe
Confidence 35677777665432 23788999999999975544 445567884 34 444444
No 88
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=51.52 E-value=28 Score=22.72 Aligned_cols=42 Identities=19% Similarity=0.369 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHhcCCcchHHHHHHhCCCHHHHHHHHH---hcCCe
Q psy9207 46 EVQKRAISLISKAYSSIPNTSLSEFLGVTEQEAAAIAQ---AEGWT 88 (125)
Q Consensus 46 ~vR~~~~~li~~AY~sI~~~~~a~~Lgl~~~e~~~~~~---~~GW~ 88 (125)
..+.+++.++.+. ..++..++|..||+|...+...+. +.|.-
T Consensus 7 ~~~~~il~~L~~~-~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i 51 (151)
T 2cyy_A 7 EIDKKIIKILQND-GKAPLREISKITGLAESTIHERIRKLRESGVI 51 (151)
T ss_dssp HHHHHHHHHHHHC-TTCCHHHHHHHHCSCHHHHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHc-CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCe
Confidence 4566778777653 689999999999999866555433 34654
No 89
>1z7u_A Hypothetical protein EF0647; winged-helix-turn-helix, MARR, structural genomics, PSI, Pro structure initiative; 2.20A {Enterococcus faecalis} SCOP: a.4.5.69
Probab=51.21 E-value=20 Score=22.29 Aligned_cols=52 Identities=13% Similarity=0.181 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHh-CCCHHHH---HHHHHhcCCee
Q psy9207 36 IAHIMKALQDEVQKRAISLISKAYSSIPNTSLSEFL-GVTEQEA---AAIAQAEGWTV 89 (125)
Q Consensus 36 ~~~~i~~l~~~vR~~~~~li~~AY~sI~~~~~a~~L-gl~~~e~---~~~~~~~GW~~ 89 (125)
+...+..+.+..+-.|+..+.. ..++..+++..+ |++..-+ ++-..+.||..
T Consensus 12 ~~~~l~~l~~~~~~~IL~~L~~--~~~~~~eLa~~l~~is~~tvs~~L~~Le~~GlI~ 67 (112)
T 1z7u_A 12 INLALSTINGKWKLSLMDELFQ--GTKRNGELMRALDGITQRVLTDRLREMEKDGLVH 67 (112)
T ss_dssp HHHHHHTTCSTTHHHHHHHHHH--SCBCHHHHHHHSTTCCHHHHHHHHHHHHHHTSEE
T ss_pred HHHHHHHHcCccHHHHHHHHHh--CCCCHHHHHHHhccCCHHHHHHHHHHHHHCCCEE
Confidence 3445555556667778888764 789999999999 9997554 44455679986
No 90
>2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus}
Probab=50.59 E-value=52 Score=21.82 Aligned_cols=52 Identities=10% Similarity=0.125 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHhc-------------CCcchHHHHHHhCCCHHHHH---HHHHhcCCee-c-Cceeec
Q psy9207 45 DEVQKRAISLISKAY-------------SSIPNTSLSEFLGVTEQEAA---AIAQAEGWTV-D-KVYTQP 96 (125)
Q Consensus 45 ~~vR~~~~~li~~AY-------------~sI~~~~~a~~Lgl~~~e~~---~~~~~~GW~~-d-~~~~~p 96 (125)
...++|++..+-.-. -.++..++|.|||++.+-+. +-..+.|+-- + +.+.++
T Consensus 117 ~~~~~Rl~~~L~~l~~~~~~~~~~~~~~~~~t~~~lA~~lg~sr~tvsR~l~~L~~~g~I~~~~~~i~i~ 186 (202)
T 2zcw_A 117 QRLKNRMAAALLELSETPLAHEEEGKVVLKATHDELAAAVGSVRETVTKVIGELAREGYIRSGYGKIQLL 186 (202)
T ss_dssp CCHHHHHHHHHHHHTTSTTEEEETTEEEEECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETTEEEES
T ss_pred CCHHHHHHHHHHHHHHhcCCCCCCcEEccCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEeCCCEEEEe
Confidence 345677776665432 13678899999999975544 4455679854 4 444444
No 91
>1u8b_A ADA polyprotein; protein-DNA complex, methylation, zinc, helix-turn-helix, metal binding protein/DNA complex; 2.10A {Escherichia coli} PDB: 1zgw_A* 1wpk_A* 1adn_A 1eyf_A
Probab=49.34 E-value=40 Score=21.40 Aligned_cols=39 Identities=10% Similarity=0.135 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHhcCCcchHHHHHHhCCCHHHHHHHHHh
Q psy9207 45 DEVQKRAISLISKAYSSIPNTSLSEFLGVTEQEAAAIAQA 84 (125)
Q Consensus 45 ~~vR~~~~~li~~AY~sI~~~~~a~~Lgl~~~e~~~~~~~ 84 (125)
+..-+++.+.|.. ...++++++|..+|+|..-+....++
T Consensus 78 ~~~l~~a~~~i~~-~~~~sl~~lA~~~g~S~~~f~r~Fk~ 116 (133)
T 1u8b_A 78 LDKITHACRLLEQ-ETPVTLEALADQVAMSPFHLHRLFKA 116 (133)
T ss_dssp HHHHHHHHHHTCS-SSCCCHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh-cCCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 3334455566665 78999999999999998777666554
No 92
>2fi0_A Conserved domain protein; structural genomics,streptococcus pneumoniae, PSI, protein S initiative; 2.10A {Streptococcus pneumoniae} SCOP: a.248.1.1
Probab=49.17 E-value=26 Score=20.92 Aligned_cols=30 Identities=17% Similarity=0.260 Sum_probs=27.3
Q ss_pred CCcchHHHHHHhCCCHHHHHHHHHhcCCee
Q psy9207 60 SSIPNTSLSEFLGVTEQEAAAIAQAEGWTV 89 (125)
Q Consensus 60 ~sI~~~~~a~~Lgl~~~e~~~~~~~~GW~~ 89 (125)
...++.++|..=|++.+++.+..++.|.++
T Consensus 48 ~~~TL~~aa~~~gid~d~l~~~L~~~g~~~ 77 (81)
T 2fi0_A 48 RKVSLKQGSKLAGTPMDKIVRTLEANGYEV 77 (81)
T ss_dssp HHCBHHHHHHHHTCCHHHHHHHHHHTTCEE
T ss_pred ccCcHHHHHHHcCCCHHHHHHHHHHcCCEe
Confidence 357899999999999999999999999887
No 93
>2oa4_A SIR5; structure, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Silicibacter pomeroyi} SCOP: a.4.12.3
Probab=49.14 E-value=38 Score=21.46 Aligned_cols=35 Identities=14% Similarity=0.203 Sum_probs=28.7
Q ss_pred HHHHHHHHhcCCcchHHHHHHhCCCHHHHHHHHHh
Q psy9207 50 RAISLISKAYSSIPNTSLSEFLGVTEQEAAAIAQA 84 (125)
Q Consensus 50 ~~~~li~~AY~sI~~~~~a~~Lgl~~~e~~~~~~~ 84 (125)
+..-.-..-+..+|+.+++...||+++++..+...
T Consensus 39 K~~VV~~v~~g~lS~~EAa~ry~Is~~ei~~W~r~ 73 (101)
T 2oa4_A 39 KIAVVRGVIYGLITLAEAKQTYGLSDEEFNSWVSA 73 (101)
T ss_dssp HHHHHHHHHHTTCCHHHHHHTTCSSHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHhCCCHHHHHHHHHH
Confidence 44445566688999999999999999999988764
No 94
>3iwf_A Transcription regulator RPIR family; transcriptional, N-terminal, PSI, MCSG, structural genomics, midwest center structural genomics; 1.40A {Staphylococcus epidermidis}
Probab=49.01 E-value=18 Score=22.86 Aligned_cols=29 Identities=3% Similarity=0.055 Sum_probs=21.0
Q ss_pred CCcchHHHHHHhCCCHHHHHHHHHhcCCe
Q psy9207 60 SSIPNTSLSEFLGVTEQEAAAIAQAEGWT 88 (125)
Q Consensus 60 ~sI~~~~~a~~Lgl~~~e~~~~~~~~GW~ 88 (125)
...++.++|.-.|+|+.-+..||++.|-.
T Consensus 34 ~~~si~elA~~~~vS~aTv~Rf~kkLGf~ 62 (107)
T 3iwf_A 34 VNMTSQEIANQLETSSTSIIRLSKKVTPG 62 (107)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHHHHHHSTT
T ss_pred HHCCHHHHHHHHCCCHHHHHHHHHHhCCC
Confidence 45677777777777777777777776654
No 95
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=48.61 E-value=40 Score=21.08 Aligned_cols=40 Identities=15% Similarity=0.012 Sum_probs=30.4
Q ss_pred HHHHHHHHHHhcCCcchHHHHHHhCCCHHHH---HHHHHhcCCee
Q psy9207 48 QKRAISLISKAYSSIPNTSLSEFLGVTEQEA---AAIAQAEGWTV 89 (125)
Q Consensus 48 R~~~~~li~~AY~sI~~~~~a~~Lgl~~~e~---~~~~~~~GW~~ 89 (125)
+-.++..+. ...++..++|..+|++..-+ ++-..+.||..
T Consensus 39 ~~~iL~~l~--~~~~~~~ela~~l~~s~~tvs~~l~~Le~~glv~ 81 (146)
T 2gxg_A 39 DFLVLRATS--DGPKTMAYLANRYFVTQSAITASVDKLEEMGLVV 81 (146)
T ss_dssp HHHHHHHHT--TSCBCHHHHHHHTTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHh--cCCcCHHHHHHHhCCCchhHHHHHHHHHHCCCEE
Confidence 345666676 78999999999999997554 44455679986
No 96
>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ...
Probab=48.29 E-value=57 Score=21.58 Aligned_cols=29 Identities=10% Similarity=0.306 Sum_probs=21.3
Q ss_pred CcchHHHHHHhCCCHHHHHHH---HHhcCCee
Q psy9207 61 SIPNTSLSEFLGVTEQEAAAI---AQAEGWTV 89 (125)
Q Consensus 61 sI~~~~~a~~Lgl~~~e~~~~---~~~~GW~~ 89 (125)
.++..++|.|||++.+-+... .++.|+--
T Consensus 167 ~~t~~~iA~~lg~sr~tvsR~l~~L~~~g~I~ 198 (210)
T 3ryp_A 167 KITRQEIGQIVGCSRETVGRILKMLEDQNLIS 198 (210)
T ss_dssp ECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred ccCHHHHHHHhCCcHHHHHHHHHHHHHCCcEE
Confidence 467899999999997554444 45578854
No 97
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=48.19 E-value=41 Score=19.98 Aligned_cols=30 Identities=13% Similarity=0.175 Sum_probs=22.4
Q ss_pred HHHHHHHHhcCCcchHHHHHHhCCCHHHHHH
Q psy9207 50 RAISLISKAYSSIPNTSLSEFLGVTEQEAAA 80 (125)
Q Consensus 50 ~~~~li~~AY~sI~~~~~a~~Lgl~~~e~~~ 80 (125)
+|.+.+ +....++++++|..||+|+.-+..
T Consensus 6 ~Il~~L-~~~g~vsv~eLa~~l~VS~~TIRr 35 (78)
T 1xn7_A 6 QVRDLL-ALRGRMEAAQISQTLNTPQPMINA 35 (78)
T ss_dssp HHHHHH-HHSCSBCHHHHHHHTTCCHHHHHH
T ss_pred HHHHHH-HHcCCCcHHHHHHHHCcCHHHHHH
Confidence 455555 457899999999999999755433
No 98
>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A*
Probab=48.04 E-value=61 Score=21.84 Aligned_cols=36 Identities=14% Similarity=0.358 Sum_probs=24.4
Q ss_pred CcchHHHHHHhCCCHHHHH---HHHHhcCCee-c-Cceeec
Q psy9207 61 SIPNTSLSEFLGVTEQEAA---AIAQAEGWTV-D-KVYTQP 96 (125)
Q Consensus 61 sI~~~~~a~~Lgl~~~e~~---~~~~~~GW~~-d-~~~~~p 96 (125)
.++..++|.|||++.+-+. +-..+.|+-- + +.+.++
T Consensus 177 ~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~~~~~~i~i~ 217 (227)
T 3d0s_A 177 DLTQEEIAQLVGASRETVNKALADFAHRGWIRLEGKSVLIS 217 (227)
T ss_dssp CCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEETTEEEES
T ss_pred CCCHHHHHHHhCCcHHHHHHHHHHHHHCCCEEecCCEEEEc
Confidence 4788999999999975544 4455678843 4 444444
No 99
>3tqn_A Transcriptional regulator, GNTR family; regulatory functions; 2.80A {Coxiella burnetii}
Probab=47.81 E-value=48 Score=20.63 Aligned_cols=49 Identities=12% Similarity=0.021 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHHHhcCCc-chHHHHHHhCCCH---HHHHHHHHhcCCee
Q psy9207 41 KALQDEVQKRAISLISKAYSSI-PNTSLSEFLGVTE---QEAAAIAQAEGWTV 89 (125)
Q Consensus 41 ~~l~~~vR~~~~~li~~AY~sI-~~~~~a~~Lgl~~---~e~~~~~~~~GW~~ 89 (125)
..+.+.+++.|..---+.=..+ +..++|..||+|. -++.....+.|+-.
T Consensus 12 ~~i~~~i~~~I~~g~~~~G~~lPs~~~La~~~~vSr~tvr~al~~L~~~Gli~ 64 (113)
T 3tqn_A 12 QQLRDKIVEAIIDGSYVEGEMIPSIRKISTEYQINPLTVSKAYQSLLDDNVIE 64 (113)
T ss_dssp HHHHHHHHHHHHHTSSCTTCEECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHHHcCCCCCCCcCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEE
Confidence 4555666666665444455677 7899999999996 55666677789965
No 100
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=47.68 E-value=49 Score=20.62 Aligned_cols=40 Identities=15% Similarity=0.167 Sum_probs=29.9
Q ss_pred HHHHHHHHhcCCcchHHHHHHhCCCHHHHH---HHHHhcCCee
Q psy9207 50 RAISLISKAYSSIPNTSLSEFLGVTEQEAA---AIAQAEGWTV 89 (125)
Q Consensus 50 ~~~~li~~AY~sI~~~~~a~~Lgl~~~e~~---~~~~~~GW~~ 89 (125)
.++..+......++..++|..+|++..-+. +-..+.||..
T Consensus 41 ~iL~~l~~~~~~~t~~~la~~l~~s~~~vs~~l~~L~~~glv~ 83 (146)
T 2fbh_A 41 LVLLHLARHRDSPTQRELAQSVGVEGPTLARLLDGLESQGLVR 83 (146)
T ss_dssp HHHHHHHHCSSCCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHcCCCCCHHHHHHHhCCChhhHHHHHHHHHHCCCee
Confidence 455566456788999999999999975544 4455689986
No 101
>2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A
Probab=47.68 E-value=36 Score=22.04 Aligned_cols=44 Identities=9% Similarity=0.174 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHhcCCcchHHHHHHhCCCHHHHHHHH---HhcCCee
Q psy9207 45 DEVQKRAISLISKAYSSIPNTSLSEFLGVTEQEAAAIA---QAEGWTV 89 (125)
Q Consensus 45 ~~vR~~~~~li~~AY~sI~~~~~a~~Lgl~~~e~~~~~---~~~GW~~ 89 (125)
+..+.+++.++.. ...++..++|..+|++...+...+ .+.|+-.
T Consensus 6 d~~~~~iL~~L~~-~~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~ 52 (150)
T 2w25_A 6 DDIDRILVRELAA-DGRATLSELATRAGLSVSAVQSRVRRLESRGVVQ 52 (150)
T ss_dssp CHHHHHHHHHHHH-CTTCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEE
T ss_pred CHHHHHHHHHHHH-cCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEE
Confidence 3456678888754 478999999999999986655543 4468863
No 102
>2cuj_A Transcriptional adaptor 2-like; transcriptional regulation, nuclear protein, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.18
Probab=47.66 E-value=52 Score=21.01 Aligned_cols=41 Identities=5% Similarity=0.088 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHhcCCcchHHHHHHhCCCH---HHHHHHHHhcCCe
Q psy9207 47 VQKRAISLISKAYSSIPNTSLSEFLGVTE---QEAAAIAQAEGWT 88 (125)
Q Consensus 47 vR~~~~~li~~AY~sI~~~~~a~~Lgl~~---~e~~~~~~~~GW~ 88 (125)
+.+.+++... .-..+...++..++.++. ..+-+|..+.||-
T Consensus 62 iK~~Li~E~~-k~g~lkk~dA~~l~kID~~K~~rIydff~~~GWi 105 (108)
T 2cuj_A 62 YKSALLNECH-KQGGLRLAQARALIKIDVNKTRKIYDFLIREGYI 105 (108)
T ss_dssp HHHHHHHHHH-HSSCCCHHHHHHHHTSCHHHHHHHHHHHHTTTSS
T ss_pred HHHHHHHHHH-HcCCCcHHHHHHHhcccHHHHHHHHHHHHHcCCC
Confidence 3444444442 235588999999999986 5678889999995
No 103
>2fsw_A PG_0823 protein; alpha-beta structure, helix-turn-helix, winged-helix-turn-HE structural genomics, PSI, protein structure initiative; HET: MSE; 2.16A {Porphyromonas gingivalis} SCOP: a.4.5.69
Probab=47.56 E-value=31 Score=21.14 Aligned_cols=53 Identities=15% Similarity=0.139 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHh-CCCHHHH---HHHHHhcCCee
Q psy9207 35 DIAHIMKALQDEVQKRAISLISKAYSSIPNTSLSEFL-GVTEQEA---AAIAQAEGWTV 89 (125)
Q Consensus 35 ~~~~~i~~l~~~vR~~~~~li~~AY~sI~~~~~a~~L-gl~~~e~---~~~~~~~GW~~ 89 (125)
.+...+..+.+..|-.|+..+. ...++..+++..+ |++..-+ .+-..+.|+..
T Consensus 14 ~~~~~l~~l~~~~~~~IL~~L~--~~~~~~~eL~~~l~gis~~~ls~~L~~Le~~GlV~ 70 (107)
T 2fsw_A 14 PVRKSMQIFAGKWTLLIIFQIN--RRIIRYGELKRAIPGISEKMLIDELKFLCGKGLIK 70 (107)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHT--TSCEEHHHHHHHSTTCCHHHHHHHHHHHHHTTSEE
T ss_pred CHHHHHHHHcCccHHHHHHHHH--hCCcCHHHHHHHcccCCHHHHHHHHHHHHHCCCEE
Confidence 4556667777788888888885 6789999999999 5997544 44456689986
No 104
>1yyv_A Putative transcriptional regulator; reductive methylation, D lysine, structural genomics, PSI; HET: MLY; 2.35A {Salmonella typhimurium} SCOP: a.4.5.69
Probab=47.32 E-value=48 Score=21.36 Aligned_cols=53 Identities=11% Similarity=0.158 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHh-CCCHHHH---HHHHHhcCCee
Q psy9207 35 DIAHIMKALQDEVQKRAISLISKAYSSIPNTSLSEFL-GVTEQEA---AAIAQAEGWTV 89 (125)
Q Consensus 35 ~~~~~i~~l~~~vR~~~~~li~~AY~sI~~~~~a~~L-gl~~~e~---~~~~~~~GW~~ 89 (125)
.+...+..+.+..|-.|+..+. ...++..+++..+ |++..-+ .+-..+.|+..
T Consensus 24 ~~~~~l~~l~~~w~l~IL~~L~--~g~~~~~eLa~~l~gis~~tls~~L~~Le~~GlV~ 80 (131)
T 1yyv_A 24 PSREVLKHVTSRWGVLILVALR--DGTHRFSDLRRXMGGVSEXMLAQSLQALEQDGFLN 80 (131)
T ss_dssp THHHHHHHHHSHHHHHHHHHGG--GCCEEHHHHHHHSTTCCHHHHHHHHHHHHHHTCEE
T ss_pred CHHHHHHHHcCCcHHHHHHHHH--cCCCCHHHHHHHhccCCHHHHHHHHHHHHHCCcEE
Confidence 4666778888888988888886 6789999999999 7997544 44455679886
No 105
>2ia0_A Putative HTH-type transcriptional regulator PF086; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus}
Probab=47.22 E-value=33 Score=23.12 Aligned_cols=44 Identities=23% Similarity=0.264 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHhcCCcchHHHHHHhCCCHHHHHHHH---HhcCCee
Q psy9207 45 DEVQKRAISLISKAYSSIPNTSLSEFLGVTEQEAAAIA---QAEGWTV 89 (125)
Q Consensus 45 ~~vR~~~~~li~~AY~sI~~~~~a~~Lgl~~~e~~~~~---~~~GW~~ 89 (125)
+.++.+++.++.+ -..++..++|..||+|...+...+ .+.|+-.
T Consensus 16 d~~d~~IL~~L~~-~~~~s~~eLA~~lglS~~tv~~~l~~L~~~G~I~ 62 (171)
T 2ia0_A 16 DDLDRNILRLLKK-DARLTISELSEQLKKPESTIHFRIKKLQERGVIE 62 (171)
T ss_dssp CHHHHHHHHHHHH-CTTCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEE
T ss_pred CHHHHHHHHHHHH-cCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEE
Confidence 4556678888765 367999999999999986665554 4468864
No 106
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=46.29 E-value=43 Score=20.50 Aligned_cols=37 Identities=16% Similarity=0.148 Sum_probs=25.6
Q ss_pred HHHHHHHHhcCCcchHHHHHHhCCCHHHHHHH---HHhcCC
Q psy9207 50 RAISLISKAYSSIPNTSLSEFLGVTEQEAAAI---AQAEGW 87 (125)
Q Consensus 50 ~~~~li~~AY~sI~~~~~a~~Lgl~~~e~~~~---~~~~GW 87 (125)
+|.+.+ +....++++++|..||+|+.-+..- ..++|-
T Consensus 6 ~Il~~L-~~~g~vsv~eLA~~l~VS~~TIRrDL~~Le~~G~ 45 (87)
T 2k02_A 6 EVRDML-ALQGRMEAKQLSARLQTPQPLIDAMLERMEAMGK 45 (87)
T ss_dssp HHHHHH-HHSCSEEHHHHHHHTTCCHHHHHHHHHHHHTTCC
T ss_pred HHHHHH-HHcCCCcHHHHHHHHCcCHHHHHHHHHHHHHCCC
Confidence 445555 3478999999999999997554443 334563
No 107
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=46.09 E-value=25 Score=17.78 Aligned_cols=35 Identities=17% Similarity=0.234 Sum_probs=23.8
Q ss_pred HHHHHHHHHhcCCcchHHHHHHhCCCHHHHHHHHHhcC
Q psy9207 49 KRAISLISKAYSSIPNTSLSEFLGVTEQEAAAIAQAEG 86 (125)
Q Consensus 49 ~~~~~li~~AY~sI~~~~~a~~Lgl~~~e~~~~~~~~G 86 (125)
..+..+... .++..++|..||++..-+-.+....|
T Consensus 12 ~~i~~l~~~---g~s~~~ia~~lgvs~~Tv~r~l~~~~ 46 (52)
T 1jko_C 12 EQISRLLEK---GHPRQQLAIIFGIGVSTLYRYFPASS 46 (52)
T ss_dssp HHHHHHHHT---TCCHHHHHHTTSCCHHHHHHHSCTTC
T ss_pred HHHHHHHHc---CCCHHHHHHHHCCCHHHHHHHHHHcc
Confidence 344444432 37899999999999877766655433
No 108
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Probab=45.88 E-value=33 Score=22.19 Aligned_cols=44 Identities=9% Similarity=0.183 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHhcCCcchHHHHHHhCCCHHHHHHHH---HhcCCee
Q psy9207 45 DEVQKRAISLISKAYSSIPNTSLSEFLGVTEQEAAAIA---QAEGWTV 89 (125)
Q Consensus 45 ~~vR~~~~~li~~AY~sI~~~~~a~~Lgl~~~e~~~~~---~~~GW~~ 89 (125)
|..+.+++.++.. -..++..++|..||++...+.... .+.|+-.
T Consensus 2 d~~~~~il~~L~~-~~~~~~~ela~~lg~s~~tv~~~l~~L~~~G~i~ 48 (150)
T 2pn6_A 2 DEIDLRILKILQY-NAKYSLDEIAREIRIPKATLSYRIKKLEKDGVIK 48 (150)
T ss_dssp CHHHHHHHHHHTT-CTTSCHHHHHHHHTSCHHHHHHHHHHHHHTTSSC
T ss_pred ChHHHHHHHHHHH-cCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCcEE
Confidence 3467788888864 357999999999999986655543 4467743
No 109
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=45.44 E-value=38 Score=22.25 Aligned_cols=41 Identities=10% Similarity=0.121 Sum_probs=31.1
Q ss_pred HHHHHHHHHhcCCcchHHHHHHhCCCHHHH---HHHHHhcCCee
Q psy9207 49 KRAISLISKAYSSIPNTSLSEFLGVTEQEA---AAIAQAEGWTV 89 (125)
Q Consensus 49 ~~~~~li~~AY~sI~~~~~a~~Lgl~~~e~---~~~~~~~GW~~ 89 (125)
-.++..+......++..++|..+|++..-+ ++-..++||..
T Consensus 56 ~~vL~~L~~~~~~~t~~eLa~~l~i~~~tvs~~l~~Le~~GlV~ 99 (166)
T 3deu_A 56 WVTLHNIHQLPPDQSQIQLAKAIGIEQPSLVRTLDQLEDKGLIS 99 (166)
T ss_dssp HHHHHHHHHSCSSEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHCCCHhhHHHHHHHHHHCCCEE
Confidence 356666766667899999999999997554 44456689987
No 110
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=45.44 E-value=28 Score=17.24 Aligned_cols=35 Identities=3% Similarity=-0.053 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHhcCCcchHHHHHHhCCCHHHHHHHHH
Q psy9207 46 EVQKRAISLISKAYSSIPNTSLSEFLGVTEQEAAAIAQ 83 (125)
Q Consensus 46 ~vR~~~~~li~~AY~sI~~~~~a~~Lgl~~~e~~~~~~ 83 (125)
..|..++.+.. .-++..++|..||++..-+..++.
T Consensus 9 ~~~~~i~~~~~---~g~s~~~IA~~lgis~~Tv~~~~~ 43 (51)
T 1tc3_C 9 TERAQLDVMKL---LNVSLHEMSRKISRSRHCIRVYLK 43 (51)
T ss_dssp HHHHHHHHHHH---TTCCHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHHHH---cCCCHHHHHHHHCcCHHHHHHHHh
Confidence 34556666543 457899999999999887777665
No 111
>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300}
Probab=45.16 E-value=68 Score=21.62 Aligned_cols=36 Identities=6% Similarity=0.044 Sum_probs=24.7
Q ss_pred CcchHHHHHHhCCCHHHHHHH---HHhcCCee-c-Cceeec
Q psy9207 61 SIPNTSLSEFLGVTEQEAAAI---AQAEGWTV-D-KVYTQP 96 (125)
Q Consensus 61 sI~~~~~a~~Lgl~~~e~~~~---~~~~GW~~-d-~~~~~p 96 (125)
.++..++|.|||++.+-+-.. ..+.|+-- + +.+.+.
T Consensus 175 ~~t~~~iA~~lg~sr~tvsR~l~~L~~~g~I~~~~~~i~i~ 215 (231)
T 3e97_A 175 PLGTQDIMARTSSSRETVSRVLKRLEAHNILEVSPRSVTLL 215 (231)
T ss_dssp CCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECSSCEEES
T ss_pred CCCHHHHHHHhCCcHHHHHHHHHHHHHCCcEEecCCEEEEe
Confidence 568899999999997655444 45578864 4 445444
No 112
>3e7l_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; 2.25A {Aquifex aeolicus} PDB: 4fth_A
Probab=44.97 E-value=39 Score=18.78 Aligned_cols=42 Identities=5% Similarity=-0.127 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHhcCCcchHHHHHHhCCCHHHHHHHHHhcCCe
Q psy9207 45 DEVQKRAISLISKAYSSIPNTSLSEFLGVTEQEAAAIAQAEGWT 88 (125)
Q Consensus 45 ~~vR~~~~~li~~AY~sI~~~~~a~~Lgl~~~e~~~~~~~~GW~ 88 (125)
+.=|+-|...+.++-.+ ...+|..||++..-+-.-..+.|-.
T Consensus 18 ~~E~~~i~~aL~~~~gn--~~~aA~~LGisr~tL~rklkk~gi~ 59 (63)
T 3e7l_A 18 EFEKIFIEEKLREYDYD--LKRTAEEIGIDLSNLYRKIKSLNIR 59 (63)
T ss_dssp HHHHHHHHHHHHHTTTC--HHHHHHHHTCCHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHhCCC--HHHHHHHHCcCHHHHHHHHHHhCCC
Confidence 33445555666665544 5689999999998888877777654
No 113
>1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36
Probab=44.82 E-value=49 Score=20.58 Aligned_cols=42 Identities=7% Similarity=0.096 Sum_probs=30.6
Q ss_pred HHHHHHHHHHhcCCcchHHHHHHhCCCHHHH---HHHHHhcCCee
Q psy9207 48 QKRAISLISKAYSSIPNTSLSEFLGVTEQEA---AAIAQAEGWTV 89 (125)
Q Consensus 48 R~~~~~li~~AY~sI~~~~~a~~Lgl~~~e~---~~~~~~~GW~~ 89 (125)
..+++.++..+-..++..++|..+|++..-+ .+-..+.||..
T Consensus 28 ~~~il~~L~~~~~~~t~~ela~~l~~~~stvs~~l~~L~~~G~v~ 72 (152)
T 1ku9_A 28 VGAVYAILYLSDKPLTISDIMEELKISKGNVSMSLKKLEELGFVR 72 (152)
T ss_dssp HHHHHHHHHHCSSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEE
Confidence 3456666644457899999999999997554 44455689976
No 114
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=44.39 E-value=47 Score=20.82 Aligned_cols=39 Identities=8% Similarity=0.087 Sum_probs=28.1
Q ss_pred HHHHHHHHhcCCcchHHHHHHhCCCHHHHH---HHHHhcCCee
Q psy9207 50 RAISLISKAYSSIPNTSLSEFLGVTEQEAA---AIAQAEGWTV 89 (125)
Q Consensus 50 ~~~~li~~AY~sI~~~~~a~~Lgl~~~e~~---~~~~~~GW~~ 89 (125)
.++..+... ..++..++|..+|++..-+. +-..++||..
T Consensus 41 ~iL~~l~~~-~~~t~~eLa~~l~~~~~~vs~~l~~L~~~Glv~ 82 (143)
T 3oop_A 41 SVLEGIEAN-EPISQKEIALWTKKDTPTVNRIVDVLLRKELIV 82 (143)
T ss_dssp HHHHHHHHH-SSEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHc-CCcCHHHHHHHHCCCHhhHHHHHHHHHHCCCee
Confidence 344444443 78999999999999975544 4455689976
No 115
>3by6_A Predicted transcriptional regulator; structural genomics, PSI-2, MCSG, structure initiative, midwest center for structural genomic binding; 2.20A {Oenococcus oeni}
Probab=44.34 E-value=32 Score=22.08 Aligned_cols=51 Identities=10% Similarity=0.012 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCc-chHHHHHHhCCCH---HHHHHHHHhcCCeec
Q psy9207 40 MKALQDEVQKRAISLISKAYSSI-PNTSLSEFLGVTE---QEAAAIAQAEGWTVD 90 (125)
Q Consensus 40 i~~l~~~vR~~~~~li~~AY~sI-~~~~~a~~Lgl~~---~e~~~~~~~~GW~~d 90 (125)
-..+.+.+|+.|..-.=+.=..| +..++|..+|+|. -++.....+.|+-.-
T Consensus 13 ~~~i~~~l~~~I~~g~~~~G~~lPse~~La~~~~vSr~tvr~Al~~L~~~Gli~~ 67 (126)
T 3by6_A 13 YLQLVDRIKNEVATDVLSANDQLPSVRETALQEKINPNTVAKAYKELEAQKVIRT 67 (126)
T ss_dssp HHHHHHHHHHHHHTTSSCTTCEECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHHHhCCCCCCCcCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEE
Confidence 34566667776665443444678 8999999999996 455666677899873
No 116
>2aqe_A Transcriptional adaptor 2, ADA2 alpha; helix-turn-helix; NMR {Mus musculus} SCOP: a.4.1.18 PDB: 2aqf_A
Probab=44.08 E-value=36 Score=20.93 Aligned_cols=40 Identities=8% Similarity=0.130 Sum_probs=28.5
Q ss_pred HHHHHHHHHHhcCCcchHHHHHHhCCCH---HHHHHHHHhcCCe
Q psy9207 48 QKRAISLISKAYSSIPNTSLSEFLGVTE---QEAAAIAQAEGWT 88 (125)
Q Consensus 48 R~~~~~li~~AY~sI~~~~~a~~Lgl~~---~e~~~~~~~~GW~ 88 (125)
.+.+++...+ -..+..+++..++.++. ..+-+|..+.||-
T Consensus 45 K~~li~E~~~-~g~l~k~da~~~~kiD~~K~~~iydf~~~~Gwi 87 (90)
T 2aqe_A 45 KSALLNECHK-QGGLRLAQARALIKIDVNKTRKIYDFLIREGYI 87 (90)
T ss_dssp HHHHHHHHHH-HSCCCHHHHHTTSSSSSHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHHH-cCCCcHHHHHHHHcccHHHHHHHHHHHHHcCCC
Confidence 3344443322 24588899999999974 6688899999995
No 117
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A
Probab=44.05 E-value=45 Score=21.93 Aligned_cols=44 Identities=14% Similarity=0.244 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHhcCCcchHHHHHHhCCCHHHHHHH---HHhcCCee
Q psy9207 45 DEVQKRAISLISKAYSSIPNTSLSEFLGVTEQEAAAI---AQAEGWTV 89 (125)
Q Consensus 45 ~~vR~~~~~li~~AY~sI~~~~~a~~Lgl~~~e~~~~---~~~~GW~~ 89 (125)
+..+.+++.++.+ ...++..++|..+|+|...+... ..+.|.-.
T Consensus 9 d~~~~~il~~L~~-~~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~ 55 (162)
T 2p5v_A 9 DKTDIKILQVLQE-NGRLTNVELSERVALSPSPCLRRLKQLEDAGIVR 55 (162)
T ss_dssp CHHHHHHHHHHHH-CTTCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEE
T ss_pred CHHHHHHHHHHHH-cCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEe
Confidence 4456678887755 45699999999999998665554 34467754
No 118
>2zp2_A Kinase A inhibitor; KIPI, histidine kinase inhibitor, ATP-binding, nucleotide- binding, protein kinase inhibitor, sporulation; 3.01A {Bacillus subtilis}
Probab=43.93 E-value=20 Score=24.17 Aligned_cols=30 Identities=10% Similarity=0.096 Sum_probs=26.1
Q ss_pred CcchHHHHHHhCCCHHHHHHHHHhcCCeec
Q psy9207 61 SIPNTSLSEFLGVTEQEAAAIAQAEGWTVD 90 (125)
Q Consensus 61 sI~~~~~a~~Lgl~~~e~~~~~~~~GW~~d 90 (125)
--.++.+|+..||+.+|+++.-.+.-|.+-
T Consensus 14 g~DL~~vA~~~gls~~evi~~h~~~~y~V~ 43 (141)
T 2zp2_A 14 GPDLEEVAKINQLSPEEVIDIHTNGEYVVY 43 (141)
T ss_dssp CTTHHHHHHHTTCCHHHHHHHHTTCCEEEE
T ss_pred CCCHHHHHHHhCcCHHHHHHHHhCCCeEEE
Confidence 357899999999999999999888888773
No 119
>4a0z_A Transcription factor FAPR; lipid homeostasis; HET: MLC; 1.90A {Staphylococcus aureus} PDB: 4a0y_A 4a0x_A* 4a12_A
Probab=43.88 E-value=56 Score=22.69 Aligned_cols=37 Identities=22% Similarity=0.266 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCcchHHHHHHhCCCHHH
Q psy9207 40 MKALQDEVQKRAISLISKAYSSIPNTSLSEFLGVTEQE 77 (125)
Q Consensus 40 i~~l~~~vR~~~~~li~~AY~sI~~~~~a~~Lgl~~~e 77 (125)
|...++.=++.|+.++.+ ...++.+++|..||+|.+-
T Consensus 6 ~~m~k~eR~~~i~~~l~~-~~~~~~~~la~~~~vs~~T 42 (190)
T 4a0z_A 6 LKLKKDKRREAIRQQIDS-NPFITDHELSDLFQVSIQT 42 (190)
T ss_dssp -CHHHHHHHHHHHHHHHH-CTTCCHHHHHHHHTSCHHH
T ss_pred cccCHHHHHHHHHHHHHH-CCCEeHHHHHHHHCCCHHH
Confidence 455666666777777665 8899999999999999743
No 120
>2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} PDB: 2dzo_B
Probab=43.81 E-value=8 Score=22.98 Aligned_cols=37 Identities=19% Similarity=0.077 Sum_probs=19.4
Q ss_pred HHHHHHHHHHhc---CCcchHHHHHHh-CCCHHHHHHHHHh
Q psy9207 48 QKRAISLISKAY---SSIPNTSLSEFL-GVTEQEAAAIAQA 84 (125)
Q Consensus 48 R~~~~~li~~AY---~sI~~~~~a~~L-gl~~~e~~~~~~~ 84 (125)
|.+|++...+-. ..+.++.+|... |+|+.|+...|.+
T Consensus 3 R~~Il~~~l~~~~~~~~vdl~~lA~~t~G~SGADi~~l~~e 43 (82)
T 2dzn_B 3 RRLIFGTIASKMSLAPEADLDSLIIRNDSLSGAVIAAIMQE 43 (82)
T ss_dssp -----------CEECTTCCSTTTTTSSCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCCcCCHHHHHHHcCCCCHHHHHHHHHH
Confidence 455555444443 357777777777 9999888877665
No 121
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=43.64 E-value=41 Score=22.69 Aligned_cols=43 Identities=21% Similarity=0.377 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHhcCCcchHHHHHHhCCCHHHHHHHH---HhcCCe
Q psy9207 45 DEVQKRAISLISKAYSSIPNTSLSEFLGVTEQEAAAIA---QAEGWT 88 (125)
Q Consensus 45 ~~vR~~~~~li~~AY~sI~~~~~a~~Lgl~~~e~~~~~---~~~GW~ 88 (125)
+..+.+++.++.+ ...++..++|..||+|...+...+ .+.|.-
T Consensus 26 d~~d~~IL~~L~~-~~~~s~~eLA~~lglS~~tv~~rl~~L~~~G~I 71 (171)
T 2e1c_A 26 DEIDKKIIKILQN-DGKAPLREISKITGLAESTIHERIRKLRESGVI 71 (171)
T ss_dssp CHHHHHHHHHHHH-CTTCCHHHHHHHHTSCHHHHHHHHHHHHHTTSS
T ss_pred CHHHHHHHHHHHH-cCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCe
Confidence 5566788888865 368999999999999986665543 345664
No 122
>3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A* 3kp6_A
Probab=43.37 E-value=33 Score=21.85 Aligned_cols=39 Identities=8% Similarity=0.152 Sum_probs=30.4
Q ss_pred HHHHHHHHHhcCCcchHHHHHHhCCCH---HHHHHHHHhcCCee
Q psy9207 49 KRAISLISKAYSSIPNTSLSEFLGVTE---QEAAAIAQAEGWTV 89 (125)
Q Consensus 49 ~~~~~li~~AY~sI~~~~~a~~Lgl~~---~e~~~~~~~~GW~~ 89 (125)
-.++..+ ....++..++|..+|++. ..+++-..++||..
T Consensus 41 ~~iL~~l--~~~~~t~~eLa~~l~~~~~~vs~~l~~Le~~Glv~ 82 (151)
T 3kp7_A 41 SHVLNML--SIEALTVGQITEKQGVNKAAVSRRVKKLLNAELVK 82 (151)
T ss_dssp HHHHHHH--HHSCBCHHHHHHHHCSCSSHHHHHHHHHHHTTSEE
T ss_pred HHHHHHH--HcCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEE
Confidence 3566667 678999999999999985 45555566789986
No 123
>2ccq_A P97, peptide N-glycanase homolog; glycoprotein; 1.6A {Homo sapiens} SCOP: d.314.1.1 PDB: 2hpl_A 2hpj_A 2cm0_A
Probab=43.14 E-value=59 Score=20.29 Aligned_cols=76 Identities=18% Similarity=0.153 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHH--HHH-HhCCCHHHHHHHHHhcCCeec-CceeeccCCCCCCCCCCCC
Q psy9207 34 DDIAHIMKALQDEVQKRAISLISKAYSSIPNTS--LSE-FLGVTEQEAAAIAQAEGWTVD-KVYTQPVKKPEEYATPNIT 109 (125)
Q Consensus 34 ~~~~~~i~~l~~~vR~~~~~li~~AY~sI~~~~--~a~-~Lgl~~~e~~~~~~~~GW~~d-~~~~~p~~~~~~~~~~~~~ 109 (125)
+.+..-+..|...+.+-+-.=-.-=|++|.++. +++ .+.+. ...++....||+-+ +.+++|... +
T Consensus 16 ~~~~~a~~tL~k~l~Nil~~P~e~KyR~Ir~~N~~f~~~v~~~~--G~~e~L~a~GF~~~~~~l~lp~~~---------~ 84 (99)
T 2ccq_A 16 ETFLEASKLLLTYADNILRNPNDEKYRSIRIGNTAFSTRLLPVR--GAVECLFEMGFEEGETHLIFPKKA---------S 84 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCGGGGEEETTCHHHHHHTTTST--THHHHHHHHTCEECSSEEECCTTS---------C
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCcccceeecCCHHHHHHhcCCc--cHHHHHHHccceeCCCeeecCCCC---------C
Confidence 333333444433333333333445688888876 333 33343 45778888999987 667776332 4
Q ss_pred hHHHHHHhhHH
Q psy9207 110 DDQLYILTQYV 120 (125)
Q Consensus 110 ~~ql~~Lt~~v 120 (125)
..+|+++.+.+
T Consensus 85 ~~~l~~~~d~l 95 (99)
T 2ccq_A 85 VEQLQKIRDLI 95 (99)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 57777776665
No 124
>1z4h_A TORI, TOR inhibition protein; winged helix, reverse turn, protein binding, DNA binding protein; NMR {Escherichia coli}
Probab=42.80 E-value=25 Score=19.86 Aligned_cols=24 Identities=4% Similarity=-0.147 Sum_probs=20.2
Q ss_pred CcchHHHHHHhCCCHHHHHHHHHh
Q psy9207 61 SIPNTSLSEFLGVTEQEAAAIAQA 84 (125)
Q Consensus 61 sI~~~~~a~~Lgl~~~e~~~~~~~ 84 (125)
-|++.+++.+||++..-+-.++.+
T Consensus 10 ~l~~~eva~~lgvsrstiy~~~~~ 33 (66)
T 1z4h_A 10 LVDLKFIMADTGFGKTFIYDRIKS 33 (66)
T ss_dssp EECHHHHHHHHSSCHHHHHHHHHH
T ss_pred ccCHHHHHHHHCcCHHHHHHHHHC
Confidence 478899999999998888777764
No 125
>1eto_A FIS, factor for inversion stimulation; transcriptional activation region, DNA-binding protein, transcription activator; 1.90A {Escherichia coli} SCOP: a.4.1.12 PDB: 1etq_A 1ety_A 1fia_A 3fis_A 3iv5_A* 3jr9_A* 3jra_A* 3jrb_A* 3jrc_A* 3jrd_A* 3jre_A* 3jrf_A* 3jrg_A* 3jrh_A* 3jri_A* 1f36_A 1etv_A 1etk_A 1etx_A 1fip_A ...
Probab=42.72 E-value=58 Score=20.14 Aligned_cols=51 Identities=10% Similarity=0.100 Sum_probs=30.5
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHhCCCHHHHHHHHHhcC
Q psy9207 31 TWSDDIAHIMKALQDEVQKRAISLISKAYSSIPNTSLSEFLGVTEQEAAAIAQAEG 86 (125)
Q Consensus 31 ~~s~~~~~~i~~l~~~vR~~~~~li~~AY~sI~~~~~a~~Lgl~~~e~~~~~~~~G 86 (125)
..+..+...+..++ |.-+...+.++-. +...+|..||++..-+-.-.++.|
T Consensus 46 ~~~~~l~~~l~~~E---r~~I~~aL~~~~g--n~~~AA~~LGIsR~TL~rkLkk~g 96 (98)
T 1eto_A 46 DVNDLYELVLAEVE---QPLLDMVMQYTLG--NQTRAALMMGINRGTLRKKLKKYG 96 (98)
T ss_dssp CCSCHHHHHHHHHH---HHHHHHHHHHTTT--CHHHHHHHHTSCHHHHHHHHHHTT
T ss_pred CCcchHHHHHHHHH---HHHHHHHHHHhCC--CHHHHHHHhCCCHHHHHHHHHHhC
Confidence 44445554444443 3334444444333 467899999999887776666554
No 126
>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2
Probab=42.42 E-value=65 Score=21.75 Aligned_cols=52 Identities=15% Similarity=0.112 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHH---hc----------CCcchHHHHHHhCCCHHHHHHH---HHhcCCee-c-Cceeec
Q psy9207 45 DEVQKRAISLISK---AY----------SSIPNTSLSEFLGVTEQEAAAI---AQAEGWTV-D-KVYTQP 96 (125)
Q Consensus 45 ~~vR~~~~~li~~---AY----------~sI~~~~~a~~Lgl~~~e~~~~---~~~~GW~~-d-~~~~~p 96 (125)
...++|++..+-. .| -.++..++|.|||++.+-+... ..+.|+-- + +.+.+.
T Consensus 151 ~~~~~Rl~~~L~~l~~~~~~~~~~~~~~~~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~~~~~~i~i~ 220 (232)
T 2gau_A 151 KHVRGRLAETLLILKENFGFENDGATLSIYLSREELATLSNMTVSNAIRTLSTFVSERMLALDGKRIKII 220 (232)
T ss_dssp SCHHHHHHHHHHHHHHHHCBCTTSSBBSCCCCHHHHHHHTTSCHHHHHHHHHHHHHTTSEEEETTEEEES
T ss_pred CCHHHHHHHHHHHHHHHcCCCCCCcEEEcccCHHHHHHHhCCCHHHHHHHHHHHHHCCCEeeCCCEEEEe
Confidence 4456677666522 23 3578899999999997554443 45578843 4 444443
No 127
>2ao9_A Phage protein; structural genomics, nine-fold NCS., PSI, protein structure initiative, midwest center for structural genomics, MCSG, U function; 1.90A {Bacillus cereus} SCOP: a.4.1.17
Probab=42.23 E-value=45 Score=22.75 Aligned_cols=40 Identities=10% Similarity=0.099 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHhcC------CcchHHHHHHhCCCHHHHHHHHH
Q psy9207 44 QDEVQKRAISLISKAYS------SIPNTSLSEFLGVTEQEAAAIAQ 83 (125)
Q Consensus 44 ~~~vR~~~~~li~~AY~------sI~~~~~a~~Lgl~~~e~~~~~~ 83 (125)
...++..+..++.+-|. .+++.++|..||++..-+-.+..
T Consensus 25 t~EfK~aAv~l~~~~~~~p~~~~~lTv~eIA~~LGIS~~TLyrW~k 70 (155)
T 2ao9_A 25 TAKQIQAAYLLVENELMESNNEEKRTQDEMANELGINRTTLWEWRT 70 (155)
T ss_dssp CHHHHHHHHHHHHHHHCC---CCCCCHHHHHHHHTCCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHccccccccccCCCHHHHHHHhCCCHHHHHHHHH
Confidence 34455555556666654 68999999999999755544433
No 128
>2ek5_A Predicted transcriptional regulators; helix-turn-helix, interwined alpha helices; 2.20A {Corynebacterium glutamicum atcc 13032} PDB: 2du9_A
Probab=41.74 E-value=59 Score=20.88 Aligned_cols=49 Identities=8% Similarity=0.154 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHHhcCCc-chHHHHHHhCCCH---HHHHHHHHhcCCee
Q psy9207 41 KALQDEVQKRAISLISKAYSSI-PNTSLSEFLGVTE---QEAAAIAQAEGWTV 89 (125)
Q Consensus 41 ~~l~~~vR~~~~~li~~AY~sI-~~~~~a~~Lgl~~---~e~~~~~~~~GW~~ 89 (125)
..+.+.+|+.|..--=+.=..| +..++|..||+|. -++.....+.|+-.
T Consensus 7 ~~i~~~i~~~I~~g~l~~G~~LPse~~La~~~gvSr~tVr~Al~~L~~~Gli~ 59 (129)
T 2ek5_A 7 KQIASLIEDSIVDGTLSIDQRVPSTNELAAFHRINPATARNGLTLLVEAGILY 59 (129)
T ss_dssp HHHHHHHHHHHHTTSSCTTSCBCCHHHHHHHTTCCHHHHHHHHHHHHTTTSEE
T ss_pred HHHHHHHHHHHHhCCCCCCCcCcCHHHHHHHHCcCHHHHHHHHHHHHHCCcEE
Confidence 4455666666655433444677 7899999999996 55666677789976
No 129
>1pxv_A Cysteine protease; hydrolase; 1.80A {Staphylococcus aureus} SCOP: d.3.1.1 PDB: 1y4h_A
Probab=41.71 E-value=23 Score=25.02 Aligned_cols=40 Identities=10% Similarity=0.280 Sum_probs=35.2
Q ss_pred HHHHHHHHhcCCcchHHHHHHhCCCHHHHHHHHHhcCCeec
Q psy9207 50 RAISLISKAYSSIPNTSLSEFLGVTEQEAAAIAQAEGWTVD 90 (125)
Q Consensus 50 ~~~~li~~AY~sI~~~~~a~~Lgl~~~e~~~~~~~~GW~~d 90 (125)
..=+.+..-|-+++-++++. .|++.+|++++++++|=..+
T Consensus 52 nA~~iMr~~yPN~s~~~l~~-t~~~~~q~Iky~~s~G~~~~ 91 (183)
T 1pxv_A 52 NAHDIMRTLYPEVSEQDLPN-CATFPNQMIEYGKSQGRDIH 91 (183)
T ss_dssp CHHHHHHHHSTTSCTTTGGG-CCBCHHHHHHHHHHTTCCCE
T ss_pred CHHHHHHHHCCCCChhHHhh-cCCCHHHHHHHHHHcCcChh
Confidence 44567888999999999998 99999999999999998765
No 130
>3e11_A Predicted zincin-like metalloprotease; DUF1025 family protein, zincin-like fold, conserved matrix metalloprotease motif; 1.80A {Acidothermus cellulolyticus 11B} SCOP: d.92.1.17
Probab=41.64 E-value=16 Score=23.58 Aligned_cols=20 Identities=10% Similarity=0.406 Sum_probs=15.5
Q ss_pred hHHHHHHhCCCHHHHHHHHHhcCC
Q psy9207 64 NTSLSEFLGVTEQEAAAIAQAEGW 87 (125)
Q Consensus 64 ~~~~a~~Lgl~~~e~~~~~~~~GW 87 (125)
+..+|.+||++++++.. +||
T Consensus 95 vhEiahh~G~~~e~l~~----~g~ 114 (114)
T 3e11_A 95 VHEIAHHFGIDDERLHE----LGY 114 (114)
T ss_dssp HHHHHHHTTCCHHHHHT----TTC
T ss_pred HHHHHHHcCCCHHHHHH----ccC
Confidence 45678899999998843 677
No 131
>3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A*
Probab=41.41 E-value=84 Score=21.58 Aligned_cols=38 Identities=13% Similarity=0.120 Sum_probs=25.6
Q ss_pred CcchHHHHHHhCCCHHHHHH---HHHhcCCee-c-CceeeccC
Q psy9207 61 SIPNTSLSEFLGVTEQEAAA---IAQAEGWTV-D-KVYTQPVK 98 (125)
Q Consensus 61 sI~~~~~a~~Lgl~~~e~~~---~~~~~GW~~-d-~~~~~p~~ 98 (125)
.++..++|.|||++.+-+-. -..+.|+-- + +.+.+..+
T Consensus 193 ~lt~~~lA~~lG~sr~tvsR~l~~L~~~GlI~~~~~~i~I~d~ 235 (243)
T 3la7_A 193 KLSHQAIAEAIGSTRVTVTRLLGDLREKKMISIHKKKITVHKP 235 (243)
T ss_dssp CCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETTEEEECC-
T ss_pred cCCHHHHHHHHCCcHHHHHHHHHHHHHCCCEEEcCCEEEECCH
Confidence 56789999999999755444 455678864 4 44555533
No 132
>2dal_A Protein KIAA0794; FAS associted factor 1, UBA-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=41.38 E-value=26 Score=19.96 Aligned_cols=27 Identities=11% Similarity=0.176 Sum_probs=22.7
Q ss_pred hHHHHHHhCCCHHHHHHHHHhcCCeec
Q psy9207 64 NTSLSEFLGVTEQEAAAIAQAEGWTVD 90 (125)
Q Consensus 64 ~~~~a~~Lgl~~~e~~~~~~~~GW~~d 90 (125)
+.++....|.+++.+..|....+|.++
T Consensus 19 i~qF~~iTg~~~~~A~~~Le~~~WnLe 45 (62)
T 2dal_A 19 IQQFTTITGASESVGKHMLEACNNNLE 45 (62)
T ss_dssp HHHHHHHTCCCHHHHHHHHHTTTSCHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHcCCCHH
Confidence 556677889998888899999999987
No 133
>2ozu_A Histone acetyltransferase MYST3; structural genomics, structural G consortium, SGC; HET: ALY ACO; 2.30A {Homo sapiens} SCOP: d.108.1.1 PDB: 2rc4_A* 1m36_A
Probab=40.80 E-value=47 Score=25.00 Aligned_cols=43 Identities=12% Similarity=0.087 Sum_probs=28.9
Q ss_pred HHHHHHHHHHH-hcCCcchHHHHHHhCCCHHHHHHHHHhcCCee
Q psy9207 47 VQKRAISLISK-AYSSIPNTSLSEFLGVTEQEAAAIAQAEGWTV 89 (125)
Q Consensus 47 vR~~~~~li~~-AY~sI~~~~~a~~Lgl~~~e~~~~~~~~GW~~ 89 (125)
=+..+++.+.. .-..|++++++...|+..+|++...+..|.-.
T Consensus 199 W~~~il~~L~~~~~~~isi~~is~~T~i~~~DIi~tL~~l~~l~ 242 (284)
T 2ozu_A 199 WKSVILECLYHQNDKQISIKKLSKLTGICPQDITSTLHHLRMLD 242 (284)
T ss_dssp HHHHHHHHHHHC-----CHHHHHHHHCBCHHHHHHHHHHTTCC-
T ss_pred HHHHHHHHHHhcCCCcEeHHHHHHHhCCCHHHHHHHHHHCCCEE
Confidence 33444444432 34689999999999999999999999887764
No 134
>2bgc_A PRFA; bacterial infection, human pathogen, transcriptional regulat transcription; HET: PR3; 2.3A {Listeria monocytogenes} SCOP: a.4.5.4 b.82.3.3 PDB: 2beo_A* 1omi_A
Probab=40.18 E-value=87 Score=21.38 Aligned_cols=36 Identities=11% Similarity=0.136 Sum_probs=24.2
Q ss_pred CcchHHHHHHhCCCH-HHHHHH---HHhcCCe-ec-Cceeec
Q psy9207 61 SIPNTSLSEFLGVTE-QEAAAI---AQAEGWT-VD-KVYTQP 96 (125)
Q Consensus 61 sI~~~~~a~~Lgl~~-~e~~~~---~~~~GW~-~d-~~~~~p 96 (125)
.++..++|.|||++. +-+-.. ..+.|+- ++ +.+.+.
T Consensus 169 ~~t~~~lA~~lG~sr~etvsR~l~~l~~~glI~~~~~~i~I~ 210 (238)
T 2bgc_A 169 NLTMQELGYSSGIAHSSAVSRIISKLKQEKVIVYKNSCFYVQ 210 (238)
T ss_dssp CCCHHHHHHHTTCCCHHHHHHHHHHHHHTTSEEEETTEEEES
T ss_pred cCCHHHHHHHhCCChHHHHHHHHHHHHHCCCEEecCCEEEEe
Confidence 577889999999997 565444 4557884 34 334443
No 135
>3mml_B Allophanate hydrolase subunit 1; structural genomics, PSI-2, protein structure initiative, tuberculosis structural genomics consortium; 2.50A {Mycobacterium smegmatis}
Probab=39.99 E-value=30 Score=25.09 Aligned_cols=34 Identities=18% Similarity=0.339 Sum_probs=29.3
Q ss_pred HhcCCcchHHHHHHhCCCHHHHHHHHHhcCCeec
Q psy9207 57 KAYSSIPNTSLSEFLGVTEQEAAAIAQAEGWTVD 90 (125)
Q Consensus 57 ~AY~sI~~~~~a~~Lgl~~~e~~~~~~~~GW~~d 90 (125)
-+|.--.++.+|+..||+.+|+++.-.+.-|.+-
T Consensus 109 V~Y~gpDL~~vA~~~GLs~~eVi~~Hs~~~y~V~ 142 (228)
T 3mml_B 109 VVYDGADLHEVASLTGMTPAQVIAAHTGTPWRVG 142 (228)
T ss_dssp EECCCTTHHHHHHHHTSCHHHHHHHHHHSCEEEE
T ss_pred ccCCCCCHHHHHHHhCcCHHHHHHHHhCCCEEEE
Confidence 3566668999999999999999999998888874
No 136
>2y75_A HTH-type transcriptional regulator CYMR; DNA binding protein; 2.00A {Bacillus subtilis}
Probab=39.91 E-value=68 Score=20.12 Aligned_cols=40 Identities=10% Similarity=0.078 Sum_probs=29.4
Q ss_pred HHHHHHHHhc--CCcchHHHHHHhCCCHHHH---HHHHHhcCCee
Q psy9207 50 RAISLISKAY--SSIPNTSLSEFLGVTEQEA---AAIAQAEGWTV 89 (125)
Q Consensus 50 ~~~~li~~AY--~sI~~~~~a~~Lgl~~~e~---~~~~~~~GW~~ 89 (125)
+++..+.+.+ ..++..++|..+|++..-+ .....+.|+..
T Consensus 13 ~iL~~la~~~~~~~~s~~ela~~~~i~~~~v~~il~~L~~~Glv~ 57 (129)
T 2y75_A 13 TIMIELAKKHGEGPTSLKSIAQTNNLSEHYLEQLVSPLRNAGLVK 57 (129)
T ss_dssp HHHHHHHHTTTSCCBCHHHHHHHTTSCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHhCCCCCcCCHHHHHHHHCcCHHHHHHHHHHHHHCCceE
Confidence 4566676665 5689999999999997554 44455679955
No 137
>2xvc_A ESCRT-III, SSO0910; cell cycle, cell division, cytokinesis, winged-helix; 2.15A {Sulfolobus solfataricus}
Probab=39.73 E-value=53 Score=18.80 Aligned_cols=35 Identities=17% Similarity=0.262 Sum_probs=28.4
Q ss_pred HHHHHHHHHhcCCcchHHHHHHhCCCHHHHHHHHH
Q psy9207 49 KRAISLISKAYSSIPNTSLSEFLGVTEQEAAAIAQ 83 (125)
Q Consensus 49 ~~~~~li~~AY~sI~~~~~a~~Lgl~~~e~~~~~~ 83 (125)
+++++-|...=.-|.++.+++.+|++.+++.....
T Consensus 13 ~~lL~yIr~sGGildI~~~a~kygV~kdeV~~~Lr 47 (59)
T 2xvc_A 13 RELLDYIVNNGGFLDIEHFSKVYGVEKQEVVKLLE 47 (59)
T ss_dssp HHHHHHHHHTTSEEEHHHHHHHHCCCHHHHHHHHH
T ss_pred HHHHHHHHHcCCEEeHHHHHHHhCCCHHHHHHHHH
Confidence 35666677777889999999999999999877654
No 138
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=39.58 E-value=49 Score=19.55 Aligned_cols=22 Identities=9% Similarity=0.077 Sum_probs=16.2
Q ss_pred cCCcchHHHHHHhCCCHHHHHH
Q psy9207 59 YSSIPNTSLSEFLGVTEQEAAA 80 (125)
Q Consensus 59 Y~sI~~~~~a~~Lgl~~~e~~~ 80 (125)
+.-.+..++|..||++..-+..
T Consensus 42 ~~g~s~~eIA~~l~is~~tV~~ 63 (91)
T 2rnj_A 42 AKGYSNQEIASASHITIKTVKT 63 (91)
T ss_dssp HTTCCTTHHHHHHTCCHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHH
Confidence 5678888888999988644433
No 139
>2lc0_A Putative uncharacterized protein TB39.8; FHAA, kinase substrate, protein binding; NMR {Mycobacterium tuberculosis}
Probab=39.44 E-value=27 Score=23.14 Aligned_cols=32 Identities=16% Similarity=0.262 Sum_probs=24.2
Q ss_pred CcchHHHHHHhCCCH-------HHHHHHHHhcCCeecCc
Q psy9207 61 SIPNTSLSEFLGVTE-------QEAAAIAQAEGWTVDKV 92 (125)
Q Consensus 61 sI~~~~~a~~Lgl~~-------~e~~~~~~~~GW~~d~~ 92 (125)
.++.+|...+-.... +.+.+++.++||++.|.
T Consensus 65 ~Ls~~D~~~l~~~~~~l~~el~~~l~~~a~~qgy~~~G~ 103 (132)
T 2lc0_A 65 TLGVHDFEKLGADPELKSTGFARDLADYIQEQGWQTYGD 103 (132)
T ss_dssp EEEHHHHHHHCSCSHHHHHHHHHHHHHHHHHHTCBCSSC
T ss_pred EeCHHHHHHHHhhhHHHHHHHHHHHHHHHHHCCCeecCC
Confidence 578888888888854 34566788899999744
No 140
>2qvo_A Uncharacterized protein AF_1382; PSI, structural genomics, southeast collaboratory for structural genomics; 1.85A {Archaeoglobus fulgidus dsm 4304} PDB: 3o3k_A 3ov8_A
Probab=39.40 E-value=44 Score=19.88 Aligned_cols=28 Identities=0% Similarity=-0.146 Sum_probs=22.2
Q ss_pred cchHHHHHHhCCCHHHH---HHHHHhcCCee
Q psy9207 62 IPNTSLSEFLGVTEQEA---AAIAQAEGWTV 89 (125)
Q Consensus 62 I~~~~~a~~Lgl~~~e~---~~~~~~~GW~~ 89 (125)
++..++|..+|++..-+ ++-..++||..
T Consensus 31 ~t~~eLa~~l~i~~~tvs~~l~~Le~~Glv~ 61 (95)
T 2qvo_A 31 VYIQYIASKVNSPHSYVWLIIKKFEEAKMVE 61 (95)
T ss_dssp EEHHHHHHHSSSCHHHHHHHHHHHHHTTSEE
T ss_pred cCHHHHHHHHCcCHHHHHHHHHHHHHCcCcc
Confidence 99999999999997554 44456689984
No 141
>1j5y_A Transcriptional regulator, biotin repressor famil; structural genomics, TM1602, BIOT repressor family, JCSG, conserved hypothetical protein; 2.30A {Thermotoga maritima} SCOP: a.4.5.1 d.94.2.1
Probab=39.29 E-value=78 Score=21.41 Aligned_cols=33 Identities=21% Similarity=0.329 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHhcCCcchHHHHHHhCCCHHHH
Q psy9207 46 EVQKRAISLISKAYSSIPNTSLSEFLGVTEQEA 78 (125)
Q Consensus 46 ~vR~~~~~li~~AY~sI~~~~~a~~Lgl~~~e~ 78 (125)
.-+.+|+.++...-..++..++|..||+|..-+
T Consensus 21 ~R~~~Il~~L~~~~~~~s~~eLa~~l~vS~~Ti 53 (187)
T 1j5y_A 21 ERLKSIVRILERSKEPVSGAQLAEELSVSRQVI 53 (187)
T ss_dssp HHHHHHHHHHHHCSSCBCHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHHcCCCcCHHHHHHHHCcCHHHH
Confidence 345578888876555699999999999997444
No 142
>2kzc_A Uncharacterized protein; DUF1476, JCSG, structutral genomics, PSI-biology, protein ST initiative, structural genomics; NMR {Jannaschia SP}
Probab=39.10 E-value=25 Score=21.71 Aligned_cols=18 Identities=39% Similarity=0.495 Sum_probs=16.2
Q ss_pred HHHHhCCCHHHHHHHHHh
Q psy9207 67 LSEFLGVTEQEAAAIAQA 84 (125)
Q Consensus 67 ~a~~Lgl~~~e~~~~~~~ 84 (125)
+|..||++++++..|+.+
T Consensus 18 AAe~lGltg~~aeaYa~~ 35 (85)
T 2kzc_A 18 VAEVLGKSGDEANAYAAE 35 (85)
T ss_dssp HHHHHTCCHHHHHHHHHH
T ss_pred HHHHcCCCHHHHHHHHHH
Confidence 688999999999999885
No 143
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii}
Probab=39.05 E-value=55 Score=20.71 Aligned_cols=40 Identities=10% Similarity=0.282 Sum_probs=28.9
Q ss_pred HHHHHHHHhcCCcchHHHHHHhCCCHHHHHHH---HHhcCCee
Q psy9207 50 RAISLISKAYSSIPNTSLSEFLGVTEQEAAAI---AQAEGWTV 89 (125)
Q Consensus 50 ~~~~li~~AY~sI~~~~~a~~Lgl~~~e~~~~---~~~~GW~~ 89 (125)
.++..+...-..++..++|..+|++..-+... ..++||..
T Consensus 43 ~vL~~l~~~~~~~t~~eLa~~l~i~~~tvs~~l~~Le~~Glv~ 85 (150)
T 3fm5_A 43 SVLVLACEQAEGVNQRGVAATMGLDPSQIVGLVDELEERGLVV 85 (150)
T ss_dssp HHHHHHHHSTTCCCSHHHHHHHTCCHHHHHHHHHHHHTTTSEE
T ss_pred HHHHHHHhCCCCcCHHHHHHHHCCCHhHHHHHHHHHHHCCCEE
Confidence 45555655445699999999999997555444 55679986
No 144
>2dzl_A Protein FAM100B; UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=38.94 E-value=29 Score=20.14 Aligned_cols=27 Identities=19% Similarity=0.329 Sum_probs=23.4
Q ss_pred hHHHHHHhCCCHHHHHHHHHhcCCeec
Q psy9207 64 NTSLSEFLGVTEQEAAAIAQAEGWTVD 90 (125)
Q Consensus 64 ~~~~a~~Lgl~~~e~~~~~~~~GW~~d 90 (125)
+.+++...|.++..+..|...-+|.++
T Consensus 21 i~qF~~iTg~~~~~A~~~Le~~~WdLe 47 (66)
T 2dzl_A 21 INQFVLAAGCAADQAKQLLQAAHWQFE 47 (66)
T ss_dssp HHHHHHHHCCCHHHHHHHHHTTTTCHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHcCCCHH
Confidence 556778889999999999999999997
No 145
>2l0k_A Stage III sporulation protein D; SPOIIID, solution structure, DNA binding, bacillus subti transcription factor, transcription; NMR {Bacillus subtilis}
Probab=38.87 E-value=34 Score=21.15 Aligned_cols=34 Identities=9% Similarity=0.008 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHhcCCcchHHHHHHhCCCHHHHHHHH
Q psy9207 47 VQKRAISLISKAYSSIPNTSLSEFLGVTEQEAAAIA 82 (125)
Q Consensus 47 vR~~~~~li~~AY~sI~~~~~a~~Lgl~~~e~~~~~ 82 (125)
=+.+|+.++.... +++.++|..+|+|..-+-...
T Consensus 8 R~~~I~~~l~~~~--~ti~dlA~~~gVS~~TVsR~L 41 (93)
T 2l0k_A 8 RTIKIGKYIVETK--KTVRVIAKEFGVSKSTVHKDL 41 (93)
T ss_dssp HHHHHHHHHHHHC--CCHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHHHcC--CCHHHHHHHHCCCHHHHHHHH
Confidence 3456777776655 899999999999975554443
No 146
>2qlz_A Transcription factor PF0095; 2.50A {Pyrococcus furiosus} PDB: 2quf_A
Probab=38.67 E-value=17 Score=26.32 Aligned_cols=49 Identities=18% Similarity=0.172 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHhCCCHHHHHHH---HHhcCCee
Q psy9207 39 IMKALQDEVQKRAISLISKAYSSIPNTSLSEFLGVTEQEAAAI---AQAEGWTV 89 (125)
Q Consensus 39 ~i~~l~~~vR~~~~~li~~AY~sI~~~~~a~~Lgl~~~e~~~~---~~~~GW~~ 89 (125)
++..|.+..|.+|+.++.. ..++..+++..+|++..-+-.. ..+.|+..
T Consensus 5 ilkaL~~~~R~~IL~~L~~--g~~s~~ELa~~lglS~stVs~hL~~Le~aGLV~ 56 (232)
T 2qlz_A 5 LFYILGNKVRRDLLSHLTC--MECYFSLLSSKVSVSSTAVAKHLKIMEREGVLQ 56 (232)
T ss_dssp HHHHHTSHHHHHHHHHHTT--TTTCSSSSCTTCCCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHhCCHHHHHHHHHHHh--CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEE
Confidence 4667788899999999974 7899999999999997655444 44467765
No 147
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=38.65 E-value=50 Score=18.20 Aligned_cols=20 Identities=10% Similarity=0.120 Sum_probs=13.3
Q ss_pred cCCcchHHHHHHhCCCHHHH
Q psy9207 59 YSSIPNTSLSEFLGVTEQEA 78 (125)
Q Consensus 59 Y~sI~~~~~a~~Lgl~~~e~ 78 (125)
+.-.+..++|..||++..-+
T Consensus 24 ~~g~s~~eIA~~l~is~~tV 43 (74)
T 1fse_A 24 VQDKTTKEIASELFISEKTV 43 (74)
T ss_dssp TTTCCHHHHHHHHTSCHHHH
T ss_pred HcCCCHHHHHHHHCCCHHHH
Confidence 44557777788888776433
No 148
>3neu_A LIN1836 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; 1.58A {Listeria innocua}
Probab=38.43 E-value=75 Score=20.12 Aligned_cols=51 Identities=20% Similarity=0.210 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCcc-hHHHHHHhCCCH---HHHHHHHHhcCCee
Q psy9207 39 IMKALQDEVQKRAISLISKAYSSIP-NTSLSEFLGVTE---QEAAAIAQAEGWTV 89 (125)
Q Consensus 39 ~i~~l~~~vR~~~~~li~~AY~sI~-~~~~a~~Lgl~~---~e~~~~~~~~GW~~ 89 (125)
+-..+.+.+++.|..---+.=..|+ ..++|..+|+|. .++.....+.|+-.
T Consensus 14 ~~~~i~~~i~~~I~~g~~~~g~~Lps~~~La~~~~vSr~tvr~Al~~L~~~G~i~ 68 (125)
T 3neu_A 14 IYSQISDWMKKQMITGEWKGEDKLPSVREMGVKLAVNPNTVSRAYQELERAGYIY 68 (125)
T ss_dssp HHHHHHHHHHHHHHTTSSCTTCBCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCeEE
Confidence 3455666677776654444556784 999999999996 55555666789987
No 149
>1wj7_A Hypothetical protein (RSGI RUH-015); UBA domain, ubiquitin associated domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.5.2.1
Probab=38.30 E-value=32 Score=22.06 Aligned_cols=27 Identities=15% Similarity=0.150 Sum_probs=23.4
Q ss_pred hHHHHHHhCCCHHHHHHHHHhcCCeec
Q psy9207 64 NTSLSEFLGVTEQEAAAIAQAEGWTVD 90 (125)
Q Consensus 64 ~~~~a~~Lgl~~~e~~~~~~~~GW~~d 90 (125)
+..++.+.|+++++++....+.+|-++
T Consensus 43 Vk~L~EmtG~seeeAr~AL~~~ngDl~ 69 (104)
T 1wj7_A 43 VKQLIDITGKNQDECVIALHDCNGDVN 69 (104)
T ss_dssp HHHHHHHTCCCHHHHHHHHHHHTSCHH
T ss_pred HHHHHHhhCCCHHHHHHHHHHcCCCHH
Confidence 456888889999999999999999885
No 150
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=38.23 E-value=55 Score=19.65 Aligned_cols=19 Identities=11% Similarity=0.316 Sum_probs=12.7
Q ss_pred CCcchHHHHHHhCCCHHHH
Q psy9207 60 SSIPNTSLSEFLGVTEQEA 78 (125)
Q Consensus 60 ~sI~~~~~a~~Lgl~~~e~ 78 (125)
.-.+..++|..||++..-+
T Consensus 43 ~G~s~~eIA~~L~iS~~TV 61 (90)
T 3ulq_B 43 KGFTNQEIADALHLSKRSI 61 (90)
T ss_dssp TTCCHHHHHHHHTCCHHHH
T ss_pred cCCCHHHHHHHHCcCHHHH
Confidence 5567777777777776443
No 151
>2hs5_A Putative transcriptional regulator GNTR; APC6050, rhodococcus SP. RH structural genomics, PSI-2, protein structure initiative; 2.20A {Rhodococcus SP} SCOP: a.4.5.6 a.78.1.1
Probab=38.10 E-value=1e+02 Score=21.63 Aligned_cols=51 Identities=12% Similarity=0.108 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHhCCCH---HHHHHHHHhcCCee
Q psy9207 39 IMKALQDEVQKRAISLISKAYSSIPNTSLSEFLGVTE---QEAAAIAQAEGWTV 89 (125)
Q Consensus 39 ~i~~l~~~vR~~~~~li~~AY~sI~~~~~a~~Lgl~~---~e~~~~~~~~GW~~ 89 (125)
+...+.+.+|+.|...-=+.=..|+..++|..||+|. -|+.......|+..
T Consensus 29 ~~~~v~~~l~~~I~~g~l~pG~~L~e~~La~~lgVSRtpVREAL~~L~~eGlv~ 82 (239)
T 2hs5_A 29 RTTRVAGILRDAIIDGTFRPGARLSEPDICAALDVSRNTVREAFQILIEDRLVA 82 (239)
T ss_dssp HHHHHHHHHHHHHHHTSSCTTCEECHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHHHHHcCCCCCcCEeCHHHHHHHHCCCHHHHHHHHHHHHHCCCEE
Confidence 4456677777777765444456899999999999995 56666677789986
No 152
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=38.10 E-value=47 Score=21.98 Aligned_cols=41 Identities=12% Similarity=0.318 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHhcCCcchHHHHHHhCCCHHHHHHHHHh---cCC
Q psy9207 46 EVQKRAISLISKAYSSIPNTSLSEFLGVTEQEAAAIAQA---EGW 87 (125)
Q Consensus 46 ~vR~~~~~li~~AY~sI~~~~~a~~Lgl~~~e~~~~~~~---~GW 87 (125)
.+..+|+.++.+- ..++..++|..||+|...+..-... .|.
T Consensus 3 ~~d~~il~~L~~~-~~~s~~~la~~lg~s~~tv~~rl~~L~~~g~ 46 (162)
T 3i4p_A 3 RLDRKILRILQED-STLAVADLAKKVGLSTTPCWRRIQKMEEDGV 46 (162)
T ss_dssp HHHHHHHHHHTTC-SCSCHHHHHHHHTCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHC-CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCC
Confidence 4566788877653 5789999999999998776665443 464
No 153
>1r8d_A Transcription activator MTAN; protein-DNA complex, transcription/DNA complex; 2.70A {Bacillus subtilis} SCOP: a.6.1.3 PDB: 1jbg_A
Probab=38.00 E-value=65 Score=19.88 Aligned_cols=22 Identities=14% Similarity=0.149 Sum_probs=18.6
Q ss_pred cchHHHHHHhCCCHHHHHHHHH
Q psy9207 62 IPNTSLSEFLGVTEQEAAAIAQ 83 (125)
Q Consensus 62 I~~~~~a~~Lgl~~~e~~~~~~ 83 (125)
.++.++|..+|++..-+.-|..
T Consensus 3 ~~i~e~A~~~gvs~~tLR~ye~ 24 (109)
T 1r8d_A 3 YQVKQVAEISGVSIRTLHHYDN 24 (109)
T ss_dssp BCHHHHHHHHSCCHHHHHHHHH
T ss_pred ccHHHHHHHHCcCHHHHHHHHH
Confidence 6789999999999888877654
No 154
>3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA-binding nucleotide-binding, transcription, transcription regulation; HET: CMP; 1.66A {Escherichia coli}
Probab=37.88 E-value=81 Score=22.01 Aligned_cols=29 Identities=7% Similarity=0.289 Sum_probs=21.2
Q ss_pred CcchHHHHHHhCCCHHHHHH---HHHhcCCee
Q psy9207 61 SIPNTSLSEFLGVTEQEAAA---IAQAEGWTV 89 (125)
Q Consensus 61 sI~~~~~a~~Lgl~~~e~~~---~~~~~GW~~ 89 (125)
.++..++|.|||++.+-+.. -.++.|+--
T Consensus 217 ~lt~~~lA~~lG~sr~tvsR~l~~L~~~GlI~ 248 (260)
T 3kcc_A 217 KITRQEIGQIVGCSRETVGRILKMLEDQNLIS 248 (260)
T ss_dssp ECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred cCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEE
Confidence 46789999999999755444 455578854
No 155
>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=37.72 E-value=52 Score=21.31 Aligned_cols=45 Identities=11% Similarity=0.125 Sum_probs=29.4
Q ss_pred CchHHHHHHHHHHHHHcCCchHH---HHHhcc-CCcHHHHHHHHHHHHHH
Q psy9207 2 SHPEIGQVWEVGKHLWNGNYPSI---YSTLKR-TWSDDIAHIMKALQDEV 47 (125)
Q Consensus 2 ~~~~l~~~~~l~~~l~~~~y~~v---~~~~~~-~~s~~~~~~i~~l~~~v 47 (125)
+.+.+..+..|.++|-.|||... +..+-. .| +.....|..++.-+
T Consensus 58 s~~v~~~L~~l~~al~~~dy~~A~~ih~~l~t~~~-~E~~~Wm~GlKrLI 106 (118)
T 2yru_A 58 SIPVKKRMALLVQELLHHQWDAADDIHRSLMVDHV-TEVSQWMVGVKRLI 106 (118)
T ss_dssp CHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSTH-HHHTTTHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCcH-HHHHhHHHHHHHHH
Confidence 45667889999999999999884 444444 44 34444454444443
No 156
>4aik_A Transcriptional regulator SLYA; transcription, transcription factor; 1.85A {Yersinia pseudotuberculosis} PDB: 4aih_A 4aij_A 3qpt_A* 3q5f_A*
Probab=37.12 E-value=73 Score=20.61 Aligned_cols=40 Identities=10% Similarity=0.181 Sum_probs=30.0
Q ss_pred HHHHHHHHhcCCcchHHHHHHhCCCHHH---HHHHHHhcCCee
Q psy9207 50 RAISLISKAYSSIPNTSLSEFLGVTEQE---AAAIAQAEGWTV 89 (125)
Q Consensus 50 ~~~~li~~AY~sI~~~~~a~~Lgl~~~e---~~~~~~~~GW~~ 89 (125)
.++..+.+.-..++..++|..+|++..- +++-..++||..
T Consensus 35 ~vL~~L~~~~~~~~~~eLa~~l~~~~~tvs~~v~~Le~~GlV~ 77 (151)
T 4aik_A 35 VTLYNINRLPPEQSQIQLAKAIGIEQPSLVRTLDQLEEKGLIT 77 (151)
T ss_dssp HHHHHHHHSCTTSCHHHHHHHHTSCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHcCCCCcHHHHHHHHCcCHHHHHHHHHHHHhCCCeE
Confidence 4566666666778889999999999755 445556689986
No 157
>3nau_A Zinc fingers and homeoboxes protein 2; ZHX2, corepressor, homeodomain, domain swapping, structural oxford protein production facility, OPPF; 2.70A {Homo sapiens}
Probab=37.00 E-value=34 Score=20.03 Aligned_cols=22 Identities=18% Similarity=0.125 Sum_probs=18.3
Q ss_pred hHHHHHHhCCCHHHHHHHHHhc
Q psy9207 64 NTSLSEFLGVTEQEAAAIAQAE 85 (125)
Q Consensus 64 ~~~~a~~Lgl~~~e~~~~~~~~ 85 (125)
...+|..+||+..++..+...+
T Consensus 34 r~eLA~~tgLt~~qVkvWFqNR 55 (66)
T 3nau_A 34 VYRLIEVTGLARSEIKKWFSDH 55 (66)
T ss_dssp HHHHHHHHCCCHHHHHHHHHHH
T ss_pred HHHHHHHhCcCHHHhhHhcccc
Confidence 4568999999999999887654
No 158
>3b73_A PHIH1 repressor-like protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.12A {Haloarcula marismortui atcc 43049}
Probab=37.00 E-value=54 Score=20.82 Aligned_cols=44 Identities=7% Similarity=0.038 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHhcCCcchHHHHHHh--CCCHHHHHHHHHh---cCCee
Q psy9207 45 DEVQKRAISLISKAYSSIPNTSLSEFL--GVTEQEAAAIAQA---EGWTV 89 (125)
Q Consensus 45 ~~vR~~~~~li~~AY~sI~~~~~a~~L--gl~~~e~~~~~~~---~GW~~ 89 (125)
+..+.+|+.++.+ ...+++.++|.-+ |++..-+.+.+.. .|..-
T Consensus 12 d~~d~~IL~~L~~-~g~~s~~eLA~~l~~giS~~aVs~rL~~Le~~GLV~ 60 (111)
T 3b73_A 12 TIWDDRILEIIHE-EGNGSPKELEDRDEIRISKSSVSRRLKKLADHDLLQ 60 (111)
T ss_dssp CHHHHHHHHHHHH-HSCBCHHHHHTSTTCCSCHHHHHHHHHHHHHTTSEE
T ss_pred CHHHHHHHHHHHH-cCCCCHHHHHHHHhcCCCHHHHHHHHHHHHHCCCEE
Confidence 5567888888865 3589999999999 9998776665443 45543
No 159
>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A
Probab=36.92 E-value=1e+02 Score=21.17 Aligned_cols=36 Identities=14% Similarity=0.157 Sum_probs=25.6
Q ss_pred CcchHHHHHHhCCCHHHHHHH---HHhcCCee-c-Cceeec
Q psy9207 61 SIPNTSLSEFLGVTEQEAAAI---AQAEGWTV-D-KVYTQP 96 (125)
Q Consensus 61 sI~~~~~a~~Lgl~~~e~~~~---~~~~GW~~-d-~~~~~p 96 (125)
.++..++|.|||++.+-+... ..+.|+-- + +.+.+.
T Consensus 177 ~~t~~~iA~~lG~sr~tvsR~l~~L~~~g~I~~~~~~i~i~ 217 (250)
T 3e6c_C 177 PLSQKSIGEITGVHHVTVSRVLASLKRENILDKKKNKIIVY 217 (250)
T ss_dssp CCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECSSEEEES
T ss_pred CCCHHHHHHHhCCcHHHHHHHHHHHHHCCCeEeCCCEEEEe
Confidence 578899999999997555444 45579864 4 455555
No 160
>3sxy_A Transcriptional regulator, GNTR family; transcription factor, metal-binding, structur genomics, PSI-2, protein structure initiative; 1.65A {Thermotoga maritima} PDB: 3dbw_A 3fms_A*
Probab=36.79 E-value=75 Score=21.81 Aligned_cols=51 Identities=18% Similarity=0.163 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHhCCCH---HHHHHHHHhcCCee
Q psy9207 39 IMKALQDEVQKRAISLISKAYSSIPNTSLSEFLGVTE---QEAAAIAQAEGWTV 89 (125)
Q Consensus 39 ~i~~l~~~vR~~~~~li~~AY~sI~~~~~a~~Lgl~~---~e~~~~~~~~GW~~ 89 (125)
+.+...+.+|+.|...-=+.=+.|+..++|..||+|. -|+.......|+..
T Consensus 13 l~~~v~~~l~~~I~~g~l~pG~~L~e~~La~~lgVSRtpVREAL~~L~~eGlv~ 66 (218)
T 3sxy_A 13 VRTKVYNLLKEMILNHELKLGEKLNVRELSEKLGISFTPVRDALLQLATEGLVK 66 (218)
T ss_dssp -CHHHHHHHHHHHHTTSSCTTCEECHHHHHHHHTCCHHHHHHHHHHHHHHTSEE
T ss_pred HHHHHHHHHHHHHHhCCCCCCCEeCHHHHHHHHCCCHHHHHHHHHHHHHCCCEE
Confidence 3455667888888876666778899999999999995 55556666789986
No 161
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=36.72 E-value=65 Score=18.96 Aligned_cols=22 Identities=18% Similarity=0.327 Sum_probs=18.1
Q ss_pred hcCCcchHHHHHHhCCCHHHHH
Q psy9207 58 AYSSIPNTSLSEFLGVTEQEAA 79 (125)
Q Consensus 58 AY~sI~~~~~a~~Lgl~~~e~~ 79 (125)
-+.-.+..++|..||++..-+.
T Consensus 50 ~~~g~s~~eIA~~lgis~~tV~ 71 (92)
T 3hug_A 50 YYRGWSTAQIATDLGIAEGTVK 71 (92)
T ss_dssp HTSCCCHHHHHHHHTSCHHHHH
T ss_pred HHcCCCHHHHHHHHCcCHHHHH
Confidence 4788999999999999975443
No 162
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}
Probab=36.70 E-value=81 Score=20.05 Aligned_cols=39 Identities=15% Similarity=0.283 Sum_probs=28.6
Q ss_pred HHHHHHHHhcCCcchHHHHHHhCCCHHHH---HHHHHhcCCee
Q psy9207 50 RAISLISKAYSSIPNTSLSEFLGVTEQEA---AAIAQAEGWTV 89 (125)
Q Consensus 50 ~~~~li~~AY~sI~~~~~a~~Lgl~~~e~---~~~~~~~GW~~ 89 (125)
.++..+.. ...++..++|..||++..-+ ++-..++||..
T Consensus 53 ~iL~~l~~-~~~~t~~ela~~l~is~~tvs~~l~~Le~~glv~ 94 (162)
T 2fa5_A 53 RVITILAL-YPGSSASEVSDRTAMDKVAVSRAVARLLERGFIR 94 (162)
T ss_dssp HHHHHHHH-STTCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHh-CCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEe
Confidence 45555554 57899999999999997554 44455679986
No 163
>3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A
Probab=36.49 E-value=90 Score=20.49 Aligned_cols=52 Identities=8% Similarity=0.112 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHh---cC----------CcchHHHHHHhCCCHHHHHHH---HHhcCCee-c-Cceeec
Q psy9207 45 DEVQKRAISLISKA---YS----------SIPNTSLSEFLGVTEQEAAAI---AQAEGWTV-D-KVYTQP 96 (125)
Q Consensus 45 ~~vR~~~~~li~~A---Y~----------sI~~~~~a~~Lgl~~~e~~~~---~~~~GW~~-d-~~~~~p 96 (125)
...++|++..+..- |. .++..++|.|||++.+-+... ..+.|+-- + +.+.+.
T Consensus 110 ~~~~~Rl~~~L~~l~~~~~~~~~~~~~~~~~t~~~lA~~lg~sr~tvsR~l~~L~~~g~I~~~~~~i~i~ 179 (195)
T 3b02_A 110 GELRARIARYLLFLADTPLSARDRQGIYVTVSHEEIADATASIRESVSKVLADLRREGLIATAYRRVYLL 179 (195)
T ss_dssp SCHHHHHHHHHHHHTTSTTEEEETTEEEEECCHHHHHHTTTSCHHHHHHHHHHHHHHTSEEEETTEEEEC
T ss_pred CCHHHHHHHHHHHHHHHcCCCCCCCeeeccCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEecCCEEEEe
Confidence 34566666655442 22 367889999999997655444 45578853 4 444443
No 164
>2hin_A GP39, repressor protein; transcription factor, dimer interface, helix-turn-helix; 1.05A {Enterobacteria phage N15} PDB: 3qws_A
Probab=36.30 E-value=41 Score=19.68 Aligned_cols=22 Identities=23% Similarity=0.040 Sum_probs=18.5
Q ss_pred chHHHHHHhCCCHHHHHHHHHh
Q psy9207 63 PNTSLSEFLGVTEQEAAAIAQA 84 (125)
Q Consensus 63 ~~~~~a~~Lgl~~~e~~~~~~~ 84 (125)
+.+.+|.+||++.+-+-++...
T Consensus 12 ~~~~lA~~lGVs~~aVs~W~~g 33 (71)
T 2hin_A 12 DVEKAAVGVGVTPGAVYQWLQA 33 (71)
T ss_dssp SHHHHHHHHTSCHHHHHHHHHH
T ss_pred CHHHHHHHHCCCHHHHHHHHhC
Confidence 3889999999999888888653
No 165
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=36.25 E-value=90 Score=20.43 Aligned_cols=51 Identities=16% Similarity=0.107 Sum_probs=32.0
Q ss_pred CcchHHHHHHhCCCHHHHHHHHHhcCCeecCceeeccCCCCCCCCCCC-ChHHHHHHhhHH
Q psy9207 61 SIPNTSLSEFLGVTEQEAAAIAQAEGWTVDKVYTQPVKKPEEYATPNI-TDDQLYILTQYV 120 (125)
Q Consensus 61 sI~~~~~a~~Lgl~~~e~~~~~~~~GW~~d~~~~~p~~~~~~~~~~~~-~~~ql~~Lt~~v 120 (125)
..++.++|..+|++..-+.-|... +.+.|..... ..-.. +++++..|..+.
T Consensus 2 ~~~I~e~A~~~gvs~~tLR~Ye~~-------GLl~p~~r~~--~g~R~Y~~~dl~~l~~I~ 53 (142)
T 3gp4_A 2 SLNIKEASEKSGVSADTIRYYERI-------GLIPPIHRNE--SGVRKFGAEDLRWILFTR 53 (142)
T ss_dssp CBCHHHHHHHHTSCHHHHHHHHHH-------TSSCCCCBCT--TSCBCBCHHHHHHHHHHH
T ss_pred CCcHHHHHHHHCcCHHHHHHHHHC-------CCCCCCcCCC--CCCeeeCHHHHHHHHHHH
Confidence 367899999999998887776542 3344422221 22233 788888776544
No 166
>2oie_A RS21-C6; helix, hydrolase; 2.20A {Mus musculus} SCOP: a.204.1.2 PDB: 2oig_A*
Probab=35.87 E-value=78 Score=19.60 Aligned_cols=30 Identities=13% Similarity=0.046 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHhcCCcchHHHHHHhCCCHHHHHH
Q psy9207 45 DEVQKRAISLISKAYSSIPNTSLSEFLGVTEQEAAA 80 (125)
Q Consensus 45 ~~vR~~~~~li~~AY~sI~~~~~a~~Lgl~~~e~~~ 80 (125)
+.+.+++++++- .+-.+|..+|++.+++..
T Consensus 75 ~~l~eElgDvL~------~l~~lA~~lgiDle~al~ 104 (111)
T 2oie_A 75 AALQEELSDVLI------YLVALAARCHVDLPQAVI 104 (111)
T ss_dssp HHHHHHHHHHHH------HHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHHHHH------HHHHHHHHHCcCHHHHHH
Confidence 567778888775 478899999999887765
No 167
>3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei}
Probab=35.48 E-value=68 Score=20.51 Aligned_cols=38 Identities=21% Similarity=0.324 Sum_probs=27.4
Q ss_pred HHHHHHHhcCCcchHHHHHHhCCCHHHHH---HHHHhcCCee
Q psy9207 51 AISLISKAYSSIPNTSLSEFLGVTEQEAA---AIAQAEGWTV 89 (125)
Q Consensus 51 ~~~li~~AY~sI~~~~~a~~Lgl~~~e~~---~~~~~~GW~~ 89 (125)
++..+.. ...++..++|..+|++..-+. +-..++||..
T Consensus 55 vL~~l~~-~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~ 95 (159)
T 3s2w_A 55 FLMRLYR-EDGINQESLSDYLKIDKGTTARAIQKLVDEGYVF 95 (159)
T ss_dssp HHHHHHH-SCSEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHH-CCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEE
Confidence 3444433 478999999999999975544 4455689986
No 168
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28
Probab=35.29 E-value=80 Score=19.56 Aligned_cols=39 Identities=21% Similarity=0.228 Sum_probs=28.2
Q ss_pred HHHHHHHHhcCCcchHHHHHHhCCCHHHH---HHHHHhcCCee
Q psy9207 50 RAISLISKAYSSIPNTSLSEFLGVTEQEA---AAIAQAEGWTV 89 (125)
Q Consensus 50 ~~~~li~~AY~sI~~~~~a~~Lgl~~~e~---~~~~~~~GW~~ 89 (125)
.++..+.. ...++..++|..+|++..-+ ++-..+.||..
T Consensus 37 ~iL~~l~~-~~~~~~~~la~~l~~s~~tvs~~l~~L~~~glv~ 78 (145)
T 2a61_A 37 DILQKIYF-EGPKRPGELSVLLGVAKSTVTGLVKRLEADGYLT 78 (145)
T ss_dssp HHHHHHHH-HCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHH-cCCCCHHHHHHHHCCCchhHHHHHHHHHHCCCee
Confidence 45555544 46799999999999997554 44455679986
No 169
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=35.11 E-value=52 Score=20.80 Aligned_cols=42 Identities=19% Similarity=0.294 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHhcCCcchHHHHHHhCCCHHHHHHH---HHhcCCee
Q psy9207 47 VQKRAISLISKAYSSIPNTSLSEFLGVTEQEAAAI---AQAEGWTV 89 (125)
Q Consensus 47 vR~~~~~li~~AY~sI~~~~~a~~Lgl~~~e~~~~---~~~~GW~~ 89 (125)
.+.+++..+.. -..++..++|..+|+|..-+... ..+.|.-.
T Consensus 5 ~~~~il~~L~~-~~~~~~~ela~~lg~s~~tv~~~l~~L~~~G~i~ 49 (141)
T 1i1g_A 5 RDKIILEILEK-DARTPFTEIAKKLGISETAVRKRVKALEEKGIIE 49 (141)
T ss_dssp HHHHHHHHHHH-CTTCCHHHHHHHHTSCHHHHHHHHHHHHHHTSSC
T ss_pred HHHHHHHHHHH-cCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEe
Confidence 45567776653 36789999999999997655444 34457653
No 170
>3boq_A Transcriptional regulator, MARR family; MARR famil structural genomics, PSI-2, protein structure initiative; 2.39A {Silicibacter pomeroyi dss-3}
Probab=34.83 E-value=48 Score=21.18 Aligned_cols=42 Identities=19% Similarity=0.184 Sum_probs=32.4
Q ss_pred HHHHHHHHHHhcCCcchHHHHHHhCCCH---HHHHHHHHhcCCee
Q psy9207 48 QKRAISLISKAYSSIPNTSLSEFLGVTE---QEAAAIAQAEGWTV 89 (125)
Q Consensus 48 R~~~~~li~~AY~sI~~~~~a~~Lgl~~---~e~~~~~~~~GW~~ 89 (125)
+-.++..+......++..++|..||++. ..+++-..++||..
T Consensus 49 ~~~iL~~L~~~~~~~~~~ela~~l~i~~~tvs~~l~~Le~~Gli~ 93 (160)
T 3boq_A 49 KFDAMAQLARNPDGLSMGKLSGALKVTNGNVSGLVNRLIKDGMVV 93 (160)
T ss_dssp HHHHHHHHHHCTTCEEHHHHHHHCSSCCSCHHHHHHHHHHHTSEE
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHCCChhhHHHHHHHHHHCCCEE
Confidence 3356777766677899999999999974 55666667789986
No 171
>4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis}
Probab=34.70 E-value=65 Score=20.41 Aligned_cols=39 Identities=10% Similarity=0.191 Sum_probs=28.5
Q ss_pred HHHHHHHHhcCCcchHHHHHHhCCCHHHHH---HHHHhcCCee
Q psy9207 50 RAISLISKAYSSIPNTSLSEFLGVTEQEAA---AIAQAEGWTV 89 (125)
Q Consensus 50 ~~~~li~~AY~sI~~~~~a~~Lgl~~~e~~---~~~~~~GW~~ 89 (125)
.++..+.. ...++..++|..+|++..-+. +-..++||..
T Consensus 45 ~iL~~l~~-~~~~~~~eLa~~l~~~~~~vs~~l~~L~~~Glv~ 86 (149)
T 4hbl_A 45 LVMLTLWE-ENPQTLNSIGRHLDLSSNTLTPMLKRLEQSGWVK 86 (149)
T ss_dssp HHHHHHHH-SSSEEHHHHHHHHTCCHHHHHHHHHHHHHHTSEE
T ss_pred HHHHHHHH-CCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEe
Confidence 45555544 388999999999999975544 4455679986
No 172
>2vz4_A Tipal, HTH-type transcriptional activator TIPA; transcription, resistance, antibiotic; 2.90A {Streptomyces lividans}
Probab=34.33 E-value=66 Score=19.84 Aligned_cols=22 Identities=18% Similarity=0.208 Sum_probs=18.5
Q ss_pred cchHHHHHHhCCCHHHHHHHHH
Q psy9207 62 IPNTSLSEFLGVTEQEAAAIAQ 83 (125)
Q Consensus 62 I~~~~~a~~Lgl~~~e~~~~~~ 83 (125)
.++.++|.++|++..-+.-|..
T Consensus 2 ~~i~e~A~~~gvs~~tLR~ye~ 23 (108)
T 2vz4_A 2 YSVGQVAGFAGVTVRTLHHYDD 23 (108)
T ss_dssp BCHHHHHHHHTCCHHHHHHHHH
T ss_pred CCHHHHHHHHCcCHHHHHHHHH
Confidence 5789999999999888877754
No 173
>3eet_A Putative GNTR-family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.97A {Streptomyces avermitilis}
Probab=34.24 E-value=95 Score=22.50 Aligned_cols=51 Identities=18% Similarity=0.252 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCc-chHHHHHHhCCCH---HHHHHHHHhcCCee
Q psy9207 39 IMKALQDEVQKRAISLISKAYSSI-PNTSLSEFLGVTE---QEAAAIAQAEGWTV 89 (125)
Q Consensus 39 ~i~~l~~~vR~~~~~li~~AY~sI-~~~~~a~~Lgl~~---~e~~~~~~~~GW~~ 89 (125)
.-.++.+.+|++|..-.=+.=..| +..++|..+|+|. -++.+...+.|+-.
T Consensus 30 ~~~~i~~~l~~~I~~g~~~~g~~lPse~~La~~~~vSr~tvr~Al~~L~~~G~i~ 84 (272)
T 3eet_A 30 AYLRVAGDLRKKIVDGSLPPHTRLPSQARIREEYGVSDTVALEARKVLMAEGLVE 84 (272)
T ss_dssp HHHHHHHHHHHHHHHTSSCTTSBCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHHHHHcCCCCCcCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEE
Confidence 445666777777765444444788 7899999999996 55566667789976
No 174
>2k9l_A RNA polymerase sigma factor RPON; protein, transcription; NMR {Aquifex aeolicus}
Probab=34.24 E-value=48 Score=19.45 Aligned_cols=27 Identities=19% Similarity=0.272 Sum_probs=22.6
Q ss_pred HHhcCCcchHHHHHHhCCCHHHHHHHH
Q psy9207 56 SKAYSSIPNTSLSEFLGVTEQEAAAIA 82 (125)
Q Consensus 56 ~~AY~sI~~~~~a~~Lgl~~~e~~~~~ 82 (125)
..-|=+.+++.++..||++.+++.+..
T Consensus 43 ~~GYL~~~l~eia~~l~~~~~eve~vL 69 (76)
T 2k9l_A 43 EKGFLSKSVEEISDVLRCSVEELEKVR 69 (76)
T ss_dssp TSSTTCCCHHHHHHHHTSCHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHcCCCHHHHHHHH
Confidence 457999999999999999988776653
No 175
>3te3_A Polycystic kidney disease 2-like 1 protein; trimeric coiled-coil, oligomerization domain, C-terminal CYT regulatory domain, metal transport; 2.69A {Homo sapiens}
Probab=33.19 E-value=19 Score=19.02 Aligned_cols=17 Identities=35% Similarity=0.614 Sum_probs=14.8
Q ss_pred ChHHHHHHhhHHHhhcC
Q psy9207 109 TDDQLYILTQYVSFLEN 125 (125)
Q Consensus 109 ~~~ql~~Lt~~v~fLEn 125 (125)
+.++++.|++=|.+||+
T Consensus 5 s~eeF~~L~rRVlqlE~ 21 (39)
T 3te3_A 5 SGEEFYMLTRRVLQLET 21 (39)
T ss_dssp CHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHH
Confidence 67899999999999885
No 176
>2a3q_A Hypothetical protein; MM.29898, BC004623, 2410015N17RIK, structural genomics, PROT structure initiative, PSI; 2.32A {Mus musculus} SCOP: a.204.1.2 PDB: 2q4p_A
Probab=33.10 E-value=1.2e+02 Score=20.76 Aligned_cols=31 Identities=13% Similarity=0.036 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHhcCCcchHHHHHHhCCCHHHHHHH
Q psy9207 45 DEVQKRAISLISKAYSSIPNTSLSEFLGVTEQEAAAI 81 (125)
Q Consensus 45 ~~vR~~~~~li~~AY~sI~~~~~a~~Lgl~~~e~~~~ 81 (125)
+.+.+++.+++-- +-.+|..+|++.++++.-
T Consensus 90 e~l~eELGDVL~~------lv~LA~~lgIDleeAl~~ 120 (170)
T 2a3q_A 90 AALQEELSDVLIY------LVALAARCHVDLPQAVIS 120 (170)
T ss_dssp HHHHHHHHHHHHH------HHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHH------HHHHHHHhCCCHHHHHHH
Confidence 5677888888764 447999999998776654
No 177
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=32.96 E-value=45 Score=20.04 Aligned_cols=40 Identities=13% Similarity=0.273 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHhCCCHHHHHHH
Q psy9207 38 HIMKALQDEVQKRAISLISKAYSSIPNTSLSEFLGVTEQEAAAI 81 (125)
Q Consensus 38 ~~i~~l~~~vR~~~~~li~~AY~sI~~~~~a~~Lgl~~~e~~~~ 81 (125)
..+..|...-| +++.++ +.-.+..++|..||++..-+...
T Consensus 23 ~~l~~Lt~~e~-~vl~l~---~~g~s~~eIA~~l~is~~tV~~~ 62 (95)
T 3c57_A 23 DPLSGLTDQER-TLLGLL---SEGLTNKQIADRMFLAEKTVKNY 62 (95)
T ss_dssp ----CCCHHHH-HHHHHH---HTTCCHHHHHHHHTCCHHHHHHH
T ss_pred HHHhcCCHHHH-HHHHHH---HcCCCHHHHHHHHCcCHHHHHHH
Confidence 33344444333 444443 77789999999999997555444
No 178
>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=32.85 E-value=41 Score=18.09 Aligned_cols=19 Identities=16% Similarity=0.074 Sum_probs=15.4
Q ss_pred CCCHHHHHHHHHhcCCeec
Q psy9207 72 GVTEQEAAAIAQAEGWTVD 90 (125)
Q Consensus 72 gl~~~e~~~~~~~~GW~~d 90 (125)
||+.+++.......||-++
T Consensus 19 GF~~~~a~~AL~~~~~n~e 37 (49)
T 1ify_A 19 GYERERVVAALRASYNNPH 37 (49)
T ss_dssp TCCHHHHHHHHHTTTSCSH
T ss_pred CCCHHHHHHHHHHhCCCHH
Confidence 8888888888888888765
No 179
>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28
Probab=32.79 E-value=68 Score=20.22 Aligned_cols=39 Identities=13% Similarity=0.146 Sum_probs=27.9
Q ss_pred HHHHHHHHhcCCcchHHHHHHhCCCHHHH---HHHHHhcCCee
Q psy9207 50 RAISLISKAYSSIPNTSLSEFLGVTEQEA---AAIAQAEGWTV 89 (125)
Q Consensus 50 ~~~~li~~AY~sI~~~~~a~~Lgl~~~e~---~~~~~~~GW~~ 89 (125)
.++..+.. ...++..++|..+|++..-+ ++-..+.||..
T Consensus 41 ~iL~~l~~-~~~~t~~ela~~l~~s~~tvs~~l~~Le~~glv~ 82 (155)
T 1s3j_A 41 FVLASLKK-HGSLKVSEIAERMEVKPSAVTLMADRLEQKNLIA 82 (155)
T ss_dssp HHHHHHHH-HSEEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHH-cCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEe
Confidence 44555543 46799999999999997554 44455679986
No 180
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=32.57 E-value=76 Score=19.45 Aligned_cols=16 Identities=13% Similarity=0.061 Sum_probs=9.0
Q ss_pred CCcchHHHHHHhCCCH
Q psy9207 60 SSIPNTSLSEFLGVTE 75 (125)
Q Consensus 60 ~sI~~~~~a~~Lgl~~ 75 (125)
.-.+..++|..||++.
T Consensus 48 ~G~s~~EIA~~L~iS~ 63 (99)
T 1p4w_A 48 EGFLVTEIAKKLNRSI 63 (99)
T ss_dssp HTCCHHHHHHHHTSCH
T ss_pred cCCCHHHHHHHHCcCH
Confidence 3445566666666654
No 181
>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis}
Probab=32.47 E-value=88 Score=19.21 Aligned_cols=40 Identities=13% Similarity=0.248 Sum_probs=28.9
Q ss_pred HHHHHHHHHhcCCcchHHHHHHhCCCHHHH---HHHHHhcCCee
Q psy9207 49 KRAISLISKAYSSIPNTSLSEFLGVTEQEA---AAIAQAEGWTV 89 (125)
Q Consensus 49 ~~~~~li~~AY~sI~~~~~a~~Lgl~~~e~---~~~~~~~GW~~ 89 (125)
-+++..+.. ...++..++|..+|++..-+ ++-..+.||..
T Consensus 34 ~~iL~~l~~-~~~~~~~ela~~l~is~~~vs~~l~~L~~~gli~ 76 (142)
T 3bdd_A 34 YSILQTLLK-DAPLHQLALQERLQIDRAAVTRHLKLLEESGYII 76 (142)
T ss_dssp HHHHHHHHH-HCSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHh-CCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEE
Confidence 345555554 46799999999999997554 44455679986
No 182
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=32.25 E-value=60 Score=17.23 Aligned_cols=18 Identities=22% Similarity=0.231 Sum_probs=11.8
Q ss_pred cCCcchHHHHHHhCCCHH
Q psy9207 59 YSSIPNTSLSEFLGVTEQ 76 (125)
Q Consensus 59 Y~sI~~~~~a~~Lgl~~~ 76 (125)
+.-.+..++|..||++..
T Consensus 11 ~~g~s~~eIA~~l~is~~ 28 (61)
T 2jpc_A 11 DEGYTNHGISEKLHISIK 28 (61)
T ss_dssp HTSCCSHHHHHHTCSCHH
T ss_pred HcCCCHHHHHHHhCCCHH
Confidence 445566777777777753
No 183
>3f2g_A Alkylmercury lyase; MERB, organomercurial lyase, mercury resistance, mercuric resistance, plasmid; 1.78A {Escherichia coli} PDB: 3f2h_A 3fn8_A 1s6l_A 3f0o_A 3f0p_A 3f2f_A
Probab=32.21 E-value=1.4e+02 Score=21.44 Aligned_cols=43 Identities=14% Similarity=0.168 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHhcCCcchHHHHHHhCCCHHHHHHHHHhc-CCeec
Q psy9207 47 VQKRAISLISKAYSSIPNTSLSEFLGVTEQEAAAIAQAE-GWTVD 90 (125)
Q Consensus 47 vR~~~~~li~~AY~sI~~~~~a~~Lgl~~~e~~~~~~~~-GW~~d 90 (125)
++..+++++. -=+-++++++|+-+|.+.+++.+...+. +..+|
T Consensus 23 ~~~~llr~la-~Grpv~~~~LA~~~g~~~~~v~~~L~~l~~~~~D 66 (220)
T 3f2g_A 23 LLVPLLRELA-KGRPVSRTTLAGILDWPAERVAAVLEQATSTEYD 66 (220)
T ss_dssp HHHHHHHHHT-TTSCBCHHHHHHHHTCCHHHHHHHHHHCTTCEEC
T ss_pred HHHHHHHHHh-cCCCCCHHHHHHHhCcCHHHHHHHHHhCCcEEEC
Confidence 4445555555 4567889999999999999999998885 77887
No 184
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=32.18 E-value=89 Score=19.14 Aligned_cols=39 Identities=15% Similarity=0.231 Sum_probs=28.3
Q ss_pred HHHHHHHHhcCCcchHHHHHHhCCCHHHH---HHHHHhcCCee
Q psy9207 50 RAISLISKAYSSIPNTSLSEFLGVTEQEA---AAIAQAEGWTV 89 (125)
Q Consensus 50 ~~~~li~~AY~sI~~~~~a~~Lgl~~~e~---~~~~~~~GW~~ 89 (125)
.++..+.. ...++..++|..+|++..-+ ++-..+.||..
T Consensus 33 ~iL~~l~~-~~~~~~~ela~~l~~s~~tvs~~l~~L~~~glv~ 74 (138)
T 3bpv_A 33 ACLLRIHR-EPGIKQDELATFFHVDKGTIARTLRRLEESGFIE 74 (138)
T ss_dssp HHHHHHHH-STTCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHH-cCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEE
Confidence 44555544 37899999999999997554 44455689986
No 185
>3lwj_A Putative TETR-family transcriptional regulator; structural G joint center for structural genomics, JCSG, protein structu initiative; 2.07A {Syntrophomonas wolfei subsp}
Probab=32.15 E-value=1e+02 Score=19.83 Aligned_cols=22 Identities=18% Similarity=0.249 Sum_probs=19.3
Q ss_pred HHHHhcCCcchHHHHHHhCCCH
Q psy9207 54 LISKAYSSIPNTSLSEFLGVTE 75 (125)
Q Consensus 54 li~~AY~sI~~~~~a~~Lgl~~ 75 (125)
..++-|..++++++|+-.|++.
T Consensus 25 ~~~~G~~~~t~~~Ia~~agvs~ 46 (202)
T 3lwj_A 25 FIEKGYYNTSIRDIIALSEVGT 46 (202)
T ss_dssp HHHHCTTTCCHHHHHHHHCSCH
T ss_pred HHHcCcccCCHHHHHHHhCCCc
Confidence 4467899999999999999985
No 186
>3kp1_E D-ornithine aminomutase S component; 5 aminomutase (OAM), metal binding protein; HET: PLP B12 5AD; 2.01A {Clostridium sticklandii} PDB: 3kow_E* 3koy_E* 3koz_E* 3kp0_E* 3kox_E*
Probab=32.13 E-value=1.1e+02 Score=20.09 Aligned_cols=32 Identities=13% Similarity=0.131 Sum_probs=22.7
Q ss_pred HHHhcCCcchHH-HHHHhCCCHHH---HHHHHHhcC
Q psy9207 55 ISKAYSSIPNTS-LSEFLGVTEQE---AAAIAQAEG 86 (125)
Q Consensus 55 i~~AY~sI~~~~-~a~~Lgl~~~e---~~~~~~~~G 86 (125)
+.+.|++.|+++ +...+|+++-+ +.+.+.++|
T Consensus 40 l~~~hTTvSVERtVlr~mGidgvda~~iVd~~~e~g 75 (121)
T 3kp1_E 40 LGKKNTTPSIERSVLLRMGFSSLEAKAIVDKTMDRG 75 (121)
T ss_dssp HHHHEECHHHHHHHHHHTTCCHHHHHHHHHHHHHTT
T ss_pred HHHcCCccHHHHHHHHHhCCCccchHHHHHHHHHcc
Confidence 346789999987 78999998633 555555544
No 187
>1xmk_A Double-stranded RNA-specific adenosine deaminase; winged helix-turn-helix, RNA editing, interferon, ADAR1, hydrolase; 0.97A {Homo sapiens} SCOP: a.4.5.19
Probab=31.85 E-value=84 Score=18.75 Aligned_cols=43 Identities=16% Similarity=0.277 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHhcCCcchHHHHHHhCCCHH-HHHHHHH---hcCCee
Q psy9207 46 EVQKRAISLISKAYSSIPNTSLSEFLGVTEQ-EAAAIAQ---AEGWTV 89 (125)
Q Consensus 46 ~vR~~~~~li~~AY~sI~~~~~a~~Lgl~~~-e~~~~~~---~~GW~~ 89 (125)
..+++|+.++.+. ...+..++|..||++.. .+..... +.|...
T Consensus 11 ~~~~~IL~~Lk~~-g~~ta~eiA~~Lgit~~~aVr~hL~~Le~eGlV~ 57 (79)
T 1xmk_A 11 EIKEKICDYLFNV-SDSSALNLAKNIGLTKARDINAVLIDMERQGDVY 57 (79)
T ss_dssp HHHHHHHHHHHHT-CCEEHHHHHHHHCGGGHHHHHHHHHHHHHTTSEE
T ss_pred hHHHHHHHHHHHc-CCcCHHHHHHHcCCCcHHHHHHHHHHHHHCCCEE
Confidence 5688888777655 67899999999999987 7777644 356665
No 188
>3cjd_A Transcriptional regulator, TETR family; YP_510936.1, putative TETR transcriptional regulator, struct genomics; HET: STE; 1.79A {Jannaschia SP}
Probab=31.79 E-value=74 Score=20.94 Aligned_cols=22 Identities=9% Similarity=0.128 Sum_probs=19.3
Q ss_pred HHHHhcCCcchHHHHHHhCCCH
Q psy9207 54 LISKAYSSIPNTSLSEFLGVTE 75 (125)
Q Consensus 54 li~~AY~sI~~~~~a~~Lgl~~ 75 (125)
..++-|..+++.++|+-.|++.
T Consensus 25 ~~e~G~~~~s~~~IA~~agvs~ 46 (198)
T 3cjd_A 25 IEAEGLASLRARELARQADCAV 46 (198)
T ss_dssp HHHHCGGGCCHHHHHHHHTSCH
T ss_pred HHhCChhhcCHHHHHHHhCCCc
Confidence 3457899999999999999985
No 189
>1uxc_A FRUR (1-57), fructose repressor; DNA-binding protein, LACI family, transc regulation; NMR {Escherichia coli} SCOP: a.35.1.5 PDB: 1uxd_A
Probab=31.64 E-value=55 Score=18.56 Aligned_cols=23 Identities=13% Similarity=0.303 Sum_probs=15.5
Q ss_pred cchHHHHHHhCCCHHHHHHHHHh
Q psy9207 62 IPNTSLSEFLGVTEQEAAAIAQA 84 (125)
Q Consensus 62 I~~~~~a~~Lgl~~~e~~~~~~~ 84 (125)
+++.++|..+|+|..-+-.++..
T Consensus 1 ~T~~diA~~aGVS~sTVSrvLng 23 (65)
T 1uxc_A 1 MKLDEIARLAGVSRTTASYVING 23 (65)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHHT
T ss_pred CCHHHHHHHHCcCHHHHHHHHcC
Confidence 35677888888887666555553
No 190
>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae}
Probab=31.40 E-value=89 Score=19.41 Aligned_cols=40 Identities=28% Similarity=0.323 Sum_probs=28.6
Q ss_pred HHHHHHHHHHhcCCcchHHHHHHhCCCHHH---HHHHHHhcCCee
Q psy9207 48 QKRAISLISKAYSSIPNTSLSEFLGVTEQE---AAAIAQAEGWTV 89 (125)
Q Consensus 48 R~~~~~li~~AY~sI~~~~~a~~Lgl~~~e---~~~~~~~~GW~~ 89 (125)
+-+++..+.. .. ++..++|..+|++..- +++-..++||..
T Consensus 40 ~~~iL~~l~~-~~-~t~~eLa~~l~~s~~tvs~~l~~L~~~Glv~ 82 (146)
T 3tgn_A 40 QEHILMLLSE-ES-LTNSELARRLNVSQAAVTKAIKSLVKEGMLE 82 (146)
T ss_dssp HHHHHHHHTT-CC-CCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHh-CC-CCHHHHHHHHCCCHHHHHHHHHHHHHCCCeE
Confidence 3455555554 35 9999999999999754 444456689986
No 191
>2phc_B Uncharacterized protein PH0987; structural genomics, southeas collaboratory for structural genomics, secsg, PSI, protein initiative; 2.29A {Pyrococcus horikoshii} SCOP: b.62.1.4 d.74.5.1
Probab=31.14 E-value=41 Score=24.27 Aligned_cols=85 Identities=11% Similarity=0.066 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHcCCchHHHHHhcc--------CCcH-HHHHHHHHHHHHHHHHHHH------HHHHhcC---CcchHHH
Q psy9207 6 IGQVWEVGKHLWNGNYPSIYSTLKR--------TWSD-DIAHIMKALQDEVQKRAIS------LISKAYS---SIPNTSL 67 (125)
Q Consensus 6 l~~~~~l~~~l~~~~y~~v~~~~~~--------~~s~-~~~~~i~~l~~~vR~~~~~------li~~AY~---sI~~~~~ 67 (125)
...++.+.++|.+...+.+-...-+ ++.. ....+++.|.+...+.... -|.-+|. --.++.+
T Consensus 24 ~~~v~al~~~l~~~~~~gv~e~vP~~~sl~V~~dp~~~~~~~l~~~l~~~~~~~~~~~~~r~v~IPV~Y~~~~gpDL~~v 103 (225)
T 2phc_B 24 NDRVHSLAKAIEKESPEWLVELVPAYSSLLVIYDPLKASYEEVESYLKRISAREVERIKGKTIEIPVAYGGEFGPDIEFV 103 (225)
T ss_dssp HHHHHHHHHHHHHHCCTTEEEEEEETTEEEEEECTTTSCHHHHHHHHHHHHHHHHHHHHTTEEEEEEEESTTTCTTHHHH
T ss_pred HHHHHHHHHHHhccCCCCeEEeeccceEEEEEEcCCcCCHHHHHHHHHHHHhhcccCCCCcEEEEEeEeCCCCCCCHHHH
Confidence 4567888888888776665322211 1111 2233333333322221111 1222465 4589999
Q ss_pred HHHhCCCHHHHHHHHHhcCCeec
Q psy9207 68 SEFLGVTEQEAAAIAQAEGWTVD 90 (125)
Q Consensus 68 a~~Lgl~~~e~~~~~~~~GW~~d 90 (125)
|+..||+.+|+++.-.+.-|.+-
T Consensus 104 A~~~gLs~~evi~~H~~~~y~V~ 126 (225)
T 2phc_B 104 AQYNGLSVDDVIEIHSKPLYRVY 126 (225)
T ss_dssp HHHHTCCHHHHHHHHHSSCEEEE
T ss_pred HHHhCcCHHHHHHHhhCCCeEEE
Confidence 99999999999999998888874
No 192
>2ns0_A Hypothetical protein; rhodococcus structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; 2.00A {Rhodococcus SP} SCOP: a.4.5.76
Probab=30.91 E-value=75 Score=19.51 Aligned_cols=29 Identities=14% Similarity=0.170 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHhc--CCcchHHHHHHhCC
Q psy9207 45 DEVQKRAISLISKAY--SSIPNTSLSEFLGV 73 (125)
Q Consensus 45 ~~vR~~~~~li~~AY--~sI~~~~~a~~Lgl 73 (125)
..+++.|+.++++.= .||+++++|..||=
T Consensus 6 ~~le~~Il~ll~~R~~~kTicPSEvARal~~ 36 (85)
T 2ns0_A 6 RELEECIRALLDARADSASICPSDVARAVAP 36 (85)
T ss_dssp HHHHHHHHHHHHHSCTTCCBCHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHhCCCCCcCHHHHHHHhCc
Confidence 356677777777764 49999999999973
No 193
>2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis}
Probab=30.76 E-value=98 Score=20.04 Aligned_cols=39 Identities=18% Similarity=0.241 Sum_probs=27.9
Q ss_pred HHHHHHHHhcCCcchHHHHHHhCCCHHHH---HHHHHhcCCee
Q psy9207 50 RAISLISKAYSSIPNTSLSEFLGVTEQEA---AAIAQAEGWTV 89 (125)
Q Consensus 50 ~~~~li~~AY~sI~~~~~a~~Lgl~~~e~---~~~~~~~GW~~ 89 (125)
.++..+.. ...++..++|..+|++..-+ ++-..++||..
T Consensus 49 ~iL~~L~~-~~~~t~~eLa~~l~is~~tvs~~l~~Le~~GlV~ 90 (168)
T 2nyx_A 49 RTLVILSN-HGPINLATLATLLGVQPSATGRMVDRLVGAELID 90 (168)
T ss_dssp HHHHHHHH-HCSEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHH-cCCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEE
Confidence 44445543 46799999999999997554 44455689986
No 194
>3hh0_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, 11183J, structural genomics; 2.67A {Bacillus cereus atcc 14579}
Probab=30.74 E-value=90 Score=20.55 Aligned_cols=51 Identities=20% Similarity=0.204 Sum_probs=32.0
Q ss_pred CcchHHHHHHhCCCHHHHHHHHHhcCCeecCceeeccCCCCCCCCCCC-ChHHHHHHhhHH
Q psy9207 61 SIPNTSLSEFLGVTEQEAAAIAQAEGWTVDKVYTQPVKKPEEYATPNI-TDDQLYILTQYV 120 (125)
Q Consensus 61 sI~~~~~a~~Lgl~~~e~~~~~~~~GW~~d~~~~~p~~~~~~~~~~~~-~~~ql~~Lt~~v 120 (125)
..++.++|..+|++..-+.-|-. -+.+.|..... ..-.. +++++..|-.+.
T Consensus 4 ~~tI~evA~~~Gvs~~tLR~ye~-------~GLl~p~~r~~--~g~R~Y~~~dl~~l~~I~ 55 (146)
T 3hh0_A 4 AWLISEFASVGDVTVRALRYYDK-------INLLKPSDYTE--GGHRLYTKDDLYVLQQIQ 55 (146)
T ss_dssp CBCHHHHHHHHTCCHHHHHHHHH-------TTSSCCSEECT--TSCEEBCHHHHHHHHHHH
T ss_pred CCcHHHHHHHHCcCHHHHHHHHH-------CCCCCCCeECC--CCCEeeCHHHHHHHHHHH
Confidence 46899999999999888776654 34444432221 12222 777777765443
No 195
>1pb6_A Hypothetical transcriptional regulator YCDC; helix-loop-helix, dimer, structural genomics, PSI, protein structure initiative; 2.50A {Escherichia coli} PDB: 3loc_A*
Probab=30.56 E-value=1.1e+02 Score=19.77 Aligned_cols=33 Identities=9% Similarity=0.116 Sum_probs=25.4
Q ss_pred HHHHhcCCcchHHHHHHhCCCH----------HHHHHHHHhcC
Q psy9207 54 LISKAYSSIPNTSLSEFLGVTE----------QEAAAIAQAEG 86 (125)
Q Consensus 54 li~~AY~sI~~~~~a~~Lgl~~----------~e~~~~~~~~G 86 (125)
..++-|..++++++|+-.|++. +++...+....
T Consensus 31 ~~~~G~~~~s~~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~~~~ 73 (212)
T 1pb6_A 31 FSQFGFHGTRLEQIAELAGVSKTNLLYYFPSKEALYIAVLRQI 73 (212)
T ss_dssp HHHHCTTTCCHHHHHHHTTSCHHHHHHHSSSHHHHHHHHHHHH
T ss_pred HHHcCcchhhHHHHHHHHCCChhHHHHhCCCHHHHHHHHHHHH
Confidence 4567899999999999999985 66665555443
No 196
>1r7j_A Conserved hypothetical protein SSO10A; winged helix-turn-helix, two-stranded antiparallel coiled CO structural genomics, PSI; 1.47A {Sulfolobus solfataricus} SCOP: a.4.5.49 PDB: 1xsx_A
Probab=30.54 E-value=93 Score=18.85 Aligned_cols=37 Identities=5% Similarity=-0.101 Sum_probs=27.3
Q ss_pred HHHHHHHHhcCCcchHHHHHHhCCCHHHH---HHHHHhcCCee
Q psy9207 50 RAISLISKAYSSIPNTSLSEFLGVTEQEA---AAIAQAEGWTV 89 (125)
Q Consensus 50 ~~~~li~~AY~sI~~~~~a~~Lgl~~~e~---~~~~~~~GW~~ 89 (125)
+|+..+. +. +....+|..+|++..-+ .++..++|.--
T Consensus 12 ~IL~~i~--~~-~~~t~La~~~~ls~~~~~~~l~~L~~~GLI~ 51 (95)
T 1r7j_A 12 AILEACK--SG-SPKTRIMYGANLSYALTGRYIKMLMDLEIIR 51 (95)
T ss_dssp HHHHHHT--TC-BCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHH--cC-CCHHHHHHHhCcCHHHHHHHHHHHHHCCCeE
Confidence 4555555 34 99999999999997554 55566789876
No 197
>2dam_A ETEA protein; KIAA0887, UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=30.53 E-value=44 Score=19.32 Aligned_cols=27 Identities=7% Similarity=0.352 Sum_probs=22.4
Q ss_pred hHHHHHHhC-CCHHHHHHHHHhcCCeec
Q psy9207 64 NTSLSEFLG-VTEQEAAAIAQAEGWTVD 90 (125)
Q Consensus 64 ~~~~a~~Lg-l~~~e~~~~~~~~GW~~d 90 (125)
+.+++...| -+.+.+..+....+|-++
T Consensus 22 i~qF~~ITg~~d~~~A~~~Le~~~WnLe 49 (67)
T 2dam_A 22 LLQFQDLTGIESMDQCRHTLEQHNWNIE 49 (67)
T ss_dssp HHHHHHHHCCSCHHHHHHHHHHHTSCHH
T ss_pred HHHHHHHhCCCCHHHHHHHHHHcCCCHH
Confidence 567888889 567888888888999987
No 198
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}
Probab=30.19 E-value=1e+02 Score=19.21 Aligned_cols=39 Identities=10% Similarity=0.088 Sum_probs=27.7
Q ss_pred HHHHHHHHhcCCcchHHHHHHhCCCHHHH---HHHHHhcCCee
Q psy9207 50 RAISLISKAYSSIPNTSLSEFLGVTEQEA---AAIAQAEGWTV 89 (125)
Q Consensus 50 ~~~~li~~AY~sI~~~~~a~~Lgl~~~e~---~~~~~~~GW~~ 89 (125)
+++..+.. ...++..++|..+|++..-+ ++-..++||..
T Consensus 46 ~iL~~l~~-~~~~t~~ela~~l~~~~~tvs~~l~~Le~~Glv~ 87 (150)
T 2rdp_A 46 VALQWLLE-EGDLTVGELSNKMYLACSTTTDLVDRMERNGLVA 87 (150)
T ss_dssp HHHHHHHH-HCSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHH-cCCCCHHHHHHHHCCCchhHHHHHHHHHHCCCee
Confidence 44444444 36799999999999997554 44455679986
No 199
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=30.04 E-value=85 Score=18.27 Aligned_cols=44 Identities=16% Similarity=0.240 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHhc--CCcchHHHHHHhCCCHHHHHHHHH---hcCCee
Q psy9207 46 EVQKRAISLISKAY--SSIPNTSLSEFLGVTEQEAAAIAQ---AEGWTV 89 (125)
Q Consensus 46 ~vR~~~~~li~~AY--~sI~~~~~a~~Lgl~~~e~~~~~~---~~GW~~ 89 (125)
...++|+.++...= ..++..++|..||++...+...+. +.|.-.
T Consensus 14 ~~~~~IL~~L~~~~~~~~~t~~eLA~~Lgvs~~tV~~~L~~L~~~G~I~ 62 (77)
T 1qgp_A 14 DQEQRILKFLEELGEGKATTAHDLSGKLGTPKKEINRVLYSLAKKGKLQ 62 (77)
T ss_dssp HHHHHHHHHHHHHCSSSCEEHHHHHHHHCCCHHHHHHHHHHHHHHTSEE
T ss_pred HHHHHHHHHHHHcCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEE
Confidence 34567777666655 379999999999999876666544 458765
No 200
>3nqo_A MARR-family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium difficile}
Probab=29.95 E-value=93 Score=20.80 Aligned_cols=42 Identities=17% Similarity=0.166 Sum_probs=30.4
Q ss_pred HHHHHHHHHHh-cCCcchHHHHHHhCCCHHHH---HHHHHhcCCee
Q psy9207 48 QKRAISLISKA-YSSIPNTSLSEFLGVTEQEA---AAIAQAEGWTV 89 (125)
Q Consensus 48 R~~~~~li~~A-Y~sI~~~~~a~~Lgl~~~e~---~~~~~~~GW~~ 89 (125)
.-.++..+... ...+++.++|..+|++..-+ ++-..++||..
T Consensus 43 q~~vL~~L~~~~~~~~t~~eLa~~l~is~~tvs~~l~~Le~~GlV~ 88 (189)
T 3nqo_A 43 QYMTILSILHLPEEETTLNNIARKMGTSKQNINRLVANLEKNGYVD 88 (189)
T ss_dssp HHHHHHHHHHSCGGGCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHhccCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEE
Confidence 34556666553 56899999999999997554 44455689986
No 201
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A
Probab=29.60 E-value=1e+02 Score=19.11 Aligned_cols=39 Identities=8% Similarity=0.074 Sum_probs=25.2
Q ss_pred HHHHHHHHhcCCcchHHHHHHhCCCH---HHHHHHHHhcCCee
Q psy9207 50 RAISLISKAYSSIPNTSLSEFLGVTE---QEAAAIAQAEGWTV 89 (125)
Q Consensus 50 ~~~~li~~AY~sI~~~~~a~~Lgl~~---~e~~~~~~~~GW~~ 89 (125)
.++..+.. ...++..++|..+|++. ..+++-..++||..
T Consensus 41 ~vL~~l~~-~~~~t~~eLa~~l~~~~~tvs~~l~~L~~~Glv~ 82 (142)
T 3ech_A 41 HVLKLIDE-QRGLNLQDLGRQMCRDKALITRKIRELEGRNLVR 82 (142)
T ss_dssp HHHHHHHH-TTTCCHHHHHHHHC---CHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHh-CCCcCHHHHHHHhCCCHHHHHHHHHHHHHCCCEe
Confidence 34444433 35799999999999986 44555566789986
No 202
>2z15_A Protein TOB1; human TOB1 protein, phosphorylation, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.30A {Homo sapiens} SCOP: d.370.1.1 PDB: 2d5r_B
Probab=29.43 E-value=74 Score=21.01 Aligned_cols=64 Identities=11% Similarity=0.047 Sum_probs=46.8
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHH-------HHHHhcCCcchH--------HHHHHhCCCHHHHHHHHHhcCCee--c-Cc
Q psy9207 31 TWSDDIAHIMKALQDEVQKRAIS-------LISKAYSSIPNT--------SLSEFLGVTEQEAAAIAQAEGWTV--D-KV 92 (125)
Q Consensus 31 ~~s~~~~~~i~~l~~~vR~~~~~-------li~~AY~sI~~~--------~~a~~Lgl~~~e~~~~~~~~GW~~--d-~~ 92 (125)
-+...+..|...|.+.+.++.-. +-..+|+.|.++ ++|.-.|++.+|+.+.. -.+|++ | +.
T Consensus 27 lp~~~v~~F~~~L~~~L~~~y~~HWyP~~P~kGs~yRcI~i~~~~Dp~i~~Aa~~sGl~~~dl~~~L-P~eltlWvDPge 105 (130)
T 2z15_A 27 LPRRRVNIFGEELERLLKKKYEGHWYPEKPYKGSGFRCIHIGEKVDPVIEQASKESGLDIDDVRGNL-PQDLSVWIDPFE 105 (130)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHTTCCCTTCTTTTHHHHCEEESSSBCHHHHHHHHTTTCCHHHHHHHS-CTTEEEEEETTE
T ss_pred CCHHHHHHHHHHHHHHHHHHhcCCCCCCCCCcccceeEEEECCCCCHHHHHHHHHhCCCHHHHHHhC-CccCEEEECCCE
Confidence 34467788888888888877765 367788888764 68999999988887754 478887 6 54
Q ss_pred eee
Q psy9207 93 YTQ 95 (125)
Q Consensus 93 ~~~ 95 (125)
+.+
T Consensus 106 Vs~ 108 (130)
T 2z15_A 106 VSY 108 (130)
T ss_dssp EEE
T ss_pred EEE
Confidence 443
No 203
>1umq_A Photosynthetic apparatus regulatory protein; DNA-binding protein, response regulator, DNA binding domain, helix-turn-helix; NMR {Rhodobacter sphaeroides} SCOP: a.4.1.12
Probab=29.28 E-value=95 Score=18.55 Aligned_cols=37 Identities=5% Similarity=0.007 Sum_probs=24.8
Q ss_pred HHHHHHHHHHhcCCcchHHHHHHhCCCHHHHHHHHHhcC
Q psy9207 48 QKRAISLISKAYSSIPNTSLSEFLGVTEQEAAAIAQAEG 86 (125)
Q Consensus 48 R~~~~~li~~AY~sI~~~~~a~~Lgl~~~e~~~~~~~~G 86 (125)
|+.|...+.++-.+ ...+|+.||++..-+-...++.|
T Consensus 43 r~~I~~aL~~~~GN--~s~AA~~LGISR~TLyrKLkk~g 79 (81)
T 1umq_A 43 WEHIQRIYEMCDRN--VSETARRLNMHRRTLQRILAKRS 79 (81)
T ss_dssp HHHHHHHHHHTTSC--HHHHHHHHTSCHHHHHHHHHTSS
T ss_pred HHHHHHHHHHhCCC--HHHHHHHhCCCHHHHHHHHHHhC
Confidence 44455555554444 56899999999887766665543
No 204
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}
Probab=29.17 E-value=93 Score=19.95 Aligned_cols=39 Identities=21% Similarity=0.301 Sum_probs=28.8
Q ss_pred HHHHHHHHhcCCcchHHHHHHhCCCH---HHHHHHHHhcCCee
Q psy9207 50 RAISLISKAYSSIPNTSLSEFLGVTE---QEAAAIAQAEGWTV 89 (125)
Q Consensus 50 ~~~~li~~AY~sI~~~~~a~~Lgl~~---~e~~~~~~~~GW~~ 89 (125)
.++..+.. ...++..++|..+|++. ..+++-..++||..
T Consensus 50 ~iL~~l~~-~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~ 91 (162)
T 3k0l_A 50 TALSVLAA-KPNLSNAKLAERSFIKPQSANKILQDLLANGWIE 91 (162)
T ss_dssp HHHHHHHH-CTTCCHHHHHHHHTSCGGGHHHHHHHHHHTTSEE
T ss_pred HHHHHHHH-CCCCCHHHHHHHHCCCHHHHHHHHHHHHHCcCeE
Confidence 44555543 46899999999999986 44555566789987
No 205
>3col_A Putative transcription regulator; structural genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE; 2.10A {Lactobacillus plantarum WCFS1}
Probab=28.93 E-value=95 Score=19.72 Aligned_cols=30 Identities=13% Similarity=0.276 Sum_probs=23.6
Q ss_pred HHHhcCCcchHHHHHHhCCCH----------HHHHHHHHh
Q psy9207 55 ISKAYSSIPNTSLSEFLGVTE----------QEAAAIAQA 84 (125)
Q Consensus 55 i~~AY~sI~~~~~a~~Lgl~~----------~e~~~~~~~ 84 (125)
.++-|..++++++|+-.|++. +++...+..
T Consensus 24 ~~~G~~~~ti~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~~ 63 (196)
T 3col_A 24 LAEGPAGVSTTKVAKRVGIAQSNVYLYFKNKQALIDSVYA 63 (196)
T ss_dssp HHHCGGGCCHHHHHHHHTSCHHHHHTTCSSHHHHHHHHHH
T ss_pred HhcCcccCCHHHHHHHhCCcHHHHHHHhCCHHHHHHHHHH
Confidence 456899999999999999985 666555444
No 206
>3cwr_A Transcriptional regulator, TETR family; YP_425770.1, transcriptional regulator of TETR family, bacterial regulatory proteins; 1.50A {Rhodospirillum rubrum atcc 11170}
Probab=28.92 E-value=1.2e+02 Score=19.48 Aligned_cols=21 Identities=10% Similarity=0.161 Sum_probs=18.8
Q ss_pred HHHhcCCcchHHHHHHhCCCH
Q psy9207 55 ISKAYSSIPNTSLSEFLGVTE 75 (125)
Q Consensus 55 i~~AY~sI~~~~~a~~Lgl~~ 75 (125)
.++-|..++++++|+-.|++.
T Consensus 31 ~~~G~~~~ti~~Ia~~agvs~ 51 (208)
T 3cwr_A 31 SSGGAAAMTMEGVASEAGIAK 51 (208)
T ss_dssp HHHCGGGCCHHHHHHHHTCCH
T ss_pred HHcCHHhccHHHHHHHhCCCH
Confidence 357899999999999999985
No 207
>3vp5_A Transcriptional regulator; heme, sensor protein, TETR superf transcription; HET: HEM; 1.90A {Lactococcus lactis} PDB: 3vox_A 3vok_A*
Probab=28.76 E-value=60 Score=21.24 Aligned_cols=22 Identities=5% Similarity=0.181 Sum_probs=19.2
Q ss_pred HHHHhcCCcchHHHHHHhCCCH
Q psy9207 54 LISKAYSSIPNTSLSEFLGVTE 75 (125)
Q Consensus 54 li~~AY~sI~~~~~a~~Lgl~~ 75 (125)
+..+-|..++++++|+-.|++.
T Consensus 25 ~~~~G~~~~ti~~Ia~~agvs~ 46 (189)
T 3vp5_A 25 FQTHSFHEAKIMHIVKALDIPR 46 (189)
T ss_dssp HHHSCTTTCCHHHHHHHHTCCH
T ss_pred HHHCCcccccHHHHHHHhCCCh
Confidence 3456899999999999999985
No 208
>2jml_A DNA binding domain/transcriptional regulator; anti-repressor, MERR, carotenogenesis; HET: DNA; NMR {Myxococcus xanthus}
Probab=28.74 E-value=50 Score=19.22 Aligned_cols=53 Identities=8% Similarity=0.238 Sum_probs=33.4
Q ss_pred CcchHHHHHHhCCCHHHHHHHHHhcCCeecCceeeccCCCCCCCCCCC-ChHHHHHHhhHHH
Q psy9207 61 SIPNTSLSEFLGVTEQEAAAIAQAEGWTVDKVYTQPVKKPEEYATPNI-TDDQLYILTQYVS 121 (125)
Q Consensus 61 sI~~~~~a~~Lgl~~~e~~~~~~~~GW~~d~~~~~p~~~~~~~~~~~~-~~~ql~~Lt~~v~ 121 (125)
..++.++|+++|++..-+.-|... ++.+.|.+... ..-.. +.+++..|-.+..
T Consensus 5 ~~~i~e~A~~~gvs~~tlR~ye~~------~gl~~p~r~~~--~g~R~Y~~~dl~~l~~I~~ 58 (81)
T 2jml_A 5 TLRIRTIARMTGIREATLRAWERR------YGFPRPLRSEG--NNYRVYSREEVEAVRRVAR 58 (81)
T ss_dssp CEEHHHHHHTTSTTHHHHHHHHHH------TCCSCCBSSSC--SSSCEECHHHHHHHHHHHH
T ss_pred cccHHHHHHHHCcCHHHHHHHHHh------CCCCCCcCCCC--CCeeecCHHHHHHHHHHHH
Confidence 367899999999999888876543 23444533220 11122 8888887765543
No 209
>3kz9_A SMCR; transcriptional regulator, quorum S DNA-binding, transcription regulation, transcription regula; HET: MSE; 2.10A {Vibrio vulnificus} PDB: 2pbx_A
Probab=28.59 E-value=66 Score=20.71 Aligned_cols=22 Identities=9% Similarity=0.141 Sum_probs=19.3
Q ss_pred HHHHhcCCcchHHHHHHhCCCH
Q psy9207 54 LISKAYSSIPNTSLSEFLGVTE 75 (125)
Q Consensus 54 li~~AY~sI~~~~~a~~Lgl~~ 75 (125)
..++-|..++++++|+-.|++.
T Consensus 30 ~~~~G~~~~s~~~Ia~~agvs~ 51 (206)
T 3kz9_A 30 FARRGIGRGGHADIAEIAQVSV 51 (206)
T ss_dssp HHHSCCSSCCHHHHHHHHTSCH
T ss_pred HHhcCcccccHHHHHHHhCCCH
Confidence 3567899999999999999985
No 210
>3ihu_A Transcriptional regulator, GNTR family; YP_298823.1, DNA binding protein, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.92A {Ralstonia eutropha}
Probab=28.48 E-value=1.4e+02 Score=20.38 Aligned_cols=51 Identities=18% Similarity=0.029 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHhCCCH---HHHHHHHHhcCCee
Q psy9207 39 IMKALQDEVQKRAISLISKAYSSIPNTSLSEFLGVTE---QEAAAIAQAEGWTV 89 (125)
Q Consensus 39 ~i~~l~~~vR~~~~~li~~AY~sI~~~~~a~~Lgl~~---~e~~~~~~~~GW~~ 89 (125)
+.+.+.+.+|+.|...-=+.=+.|+..++|..||+|. -|+.......|+..
T Consensus 17 ~~~~v~~~l~~~I~~g~l~pG~~L~E~~La~~lgVSRtpVREAl~~L~~eGlv~ 70 (222)
T 3ihu_A 17 ASDTVFFGIMSGLELGTFVPGQRLVETDLVAHFGVGRNSVREALQRLAAEGIVD 70 (222)
T ss_dssp HHHHHHHHHHHHHHHTSSCTTCEECHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHHHHHhCCCCCCCccCHHHHHHHHCCCHHHHHHHHHHHHHCCCEE
Confidence 4566777888888877666778999999999999995 55666667789986
No 211
>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*
Probab=28.46 E-value=1.2e+02 Score=22.37 Aligned_cols=47 Identities=6% Similarity=0.019 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHHHhcCCcchHHHHHHhCCCHHH---HHHHHHhcCCee
Q psy9207 41 KALQDEVQKRAISLISKAYSSIPNTSLSEFLGVTEQE---AAAIAQAEGWTV 89 (125)
Q Consensus 41 ~~l~~~vR~~~~~li~~AY~sI~~~~~a~~Lgl~~~e---~~~~~~~~GW~~ 89 (125)
..|...++-.+++.+.. ..++++++|+-+|+++.- +..+....|.--
T Consensus 46 ~~l~~a~~lgif~~L~~--~~~t~~eLA~~~g~~~~~l~rlLr~L~~~gll~ 95 (359)
T 1x19_A 46 SCMKAAIELDLFSHMAE--GPKDLATLAADTGSVPPRLEMLLETLRQMRVIN 95 (359)
T ss_dssp HHHHHHHHHTHHHHHTT--CCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHcCcHHHHcC--CCCCHHHHHHHhCcChHHHHHHHHHHHhCCCeE
Confidence 56778889999999986 689999999999999644 455566677754
No 212
>3df8_A Possible HXLR family transcriptional factor; APC89000, structural genomics, midwest center for structural genomics, MCSG; 1.65A {Thermoplasma volcanium} SCOP: a.4.5.0
Probab=28.44 E-value=71 Score=19.72 Aligned_cols=55 Identities=9% Similarity=0.103 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHh-CCCHHHHHH---HHHhcCCee
Q psy9207 35 DIAHIMKALQDEVQKRAISLISKAYSSIPNTSLSEFL-GVTEQEAAA---IAQAEGWTV 89 (125)
Q Consensus 35 ~~~~~i~~l~~~vR~~~~~li~~AY~sI~~~~~a~~L-gl~~~e~~~---~~~~~GW~~ 89 (125)
++...++.|.+..|-.|+..+...-.+++..+++..+ |++..-+.. ...+.|+..
T Consensus 16 ~~~~~l~~l~~~wrl~IL~~L~~g~~~~~~~eL~~~l~gis~~~ls~~L~~Le~~GlV~ 74 (111)
T 3df8_A 16 PSESVLHLLGKKYTMLIISVLGNGSTRQNFNDIRSSIPGISSTILSRRIKDLIDSGLVE 74 (111)
T ss_dssp TTSSTHHHHHSTTHHHHHHHHTSSSSCBCHHHHHHTSTTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHcCccHHHHHHHHhcCCCCCCHHHHHHHccCCCHHHHHHHHHHHHHCCCEE
Confidence 3455667777888888988887433335599999999 999755444 455678876
No 213
>3clo_A Transcriptional regulator; NP_811094.1, bacterial regulatory proteins, LUXR family, structural genomics; 2.04A {Bacteroides thetaiotaomicron vpi-5482}
Probab=28.12 E-value=1.1e+02 Score=21.74 Aligned_cols=33 Identities=9% Similarity=0.201 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHhcCCcchHHHHHHhCCCHHH
Q psy9207 41 KALQDEVQKRAISLISKAYSSIPNTSLSEFLGVTEQE 77 (125)
Q Consensus 41 ~~l~~~vR~~~~~li~~AY~sI~~~~~a~~Lgl~~~e 77 (125)
..|.+.-| +++.+. |.-.+..++|..||++..-
T Consensus 196 ~~L~~~er-evl~L~---~~G~s~~EIA~~L~iS~~T 228 (258)
T 3clo_A 196 NILSEREK-EILRCI---RKGLSSKEIAATLYISVNT 228 (258)
T ss_dssp TSSCHHHH-HHHHHH---HTTCCHHHHHHHHTCCHHH
T ss_pred ccCCHHHH-HHHHHH---HcCCCHHHHHHHHCcCHHH
Confidence 44444444 344442 6889999999999998633
No 214
>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} SCOP: a.4.5.0
Probab=28.08 E-value=85 Score=19.71 Aligned_cols=40 Identities=23% Similarity=0.314 Sum_probs=25.3
Q ss_pred HHHHHHHHhc-CCcchHHHHHHhCCCH---HHHHHHHHhcCCee
Q psy9207 50 RAISLISKAY-SSIPNTSLSEFLGVTE---QEAAAIAQAEGWTV 89 (125)
Q Consensus 50 ~~~~li~~AY-~sI~~~~~a~~Lgl~~---~e~~~~~~~~GW~~ 89 (125)
.++..+...- ..++..++|..+|++. ..+++-..++||..
T Consensus 45 ~vL~~l~~~~~~~~t~~eLa~~l~~~~~~vs~~l~~L~~~Glv~ 88 (148)
T 3jw4_A 45 RMIGYIYENQESGIIQKDLAQFFGRRGASITSMLQGLEKKGYIE 88 (148)
T ss_dssp HHHHHHHHHTTTCCCHHHHHHC------CHHHHHHHHHHTTSBC
T ss_pred HHHHHHHhCCCCCCCHHHHHHHHCCChhHHHHHHHHHHHCCCEE
Confidence 5555665542 6899999999999986 45555566789986
No 215
>3bni_A Putative TETR-family transcriptional regulator; structural genomics, APC7281; HET: PG4; 2.30A {Streptomyces coelicolor A3}
Probab=27.60 E-value=1.4e+02 Score=19.98 Aligned_cols=22 Identities=14% Similarity=0.151 Sum_probs=19.5
Q ss_pred HHHHhcCCcchHHHHHHhCCCH
Q psy9207 54 LISKAYSSIPNTSLSEFLGVTE 75 (125)
Q Consensus 54 li~~AY~sI~~~~~a~~Lgl~~ 75 (125)
..++-|..++++++|+-.|++.
T Consensus 56 ~~~~G~~~~tv~~IA~~AGvs~ 77 (229)
T 3bni_A 56 LDEVGYDALSTRAVALRADVPI 77 (229)
T ss_dssp HHHHCTTTCCHHHHHHHHTCCH
T ss_pred HHhcChhhccHHHHHHHHCCCc
Confidence 4567899999999999999985
No 216
>2ib1_A Death domain containing membrane protein nradd; apoptosis, NOGO, FADD; NMR {Mus musculus}
Probab=27.59 E-value=56 Score=20.01 Aligned_cols=35 Identities=17% Similarity=0.165 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHhcCCc--chHHHHHHhCCCHHHHHHHHH
Q psy9207 47 VQKRAISLISKAYSSI--PNTSLSEFLGVTEQEAAAIAQ 83 (125)
Q Consensus 47 vR~~~~~li~~AY~sI--~~~~~a~~Lgl~~~e~~~~~~ 83 (125)
-|+++-+++. + ..+ .-..+|.-|||+..++..|..
T Consensus 4 ~r~~v~~ll~-~-~~~G~dW~~LA~~Lg~~~~~I~~i~~ 40 (91)
T 2ib1_A 4 QQEEVQRLLM-M-GEPAKGWQELAGHLGYQAEAVETMAC 40 (91)
T ss_dssp HHHTTHHHHT-T-TCCSSTHHHHHHHHTCCHHHHHHHTT
T ss_pred HHHHHHHHhc-C-CCCCccHHHHHHHcCCCHHHHHHHHh
Confidence 4777888887 4 333 448899999999988877644
No 217
>3b81_A Transcriptional regulator, ACRR family; NP_350189.1, predicted DNA-binding transcriptional regulator TETR/ACRR family; 2.10A {Clostridium acetobutylicum atcc 824}
Probab=27.55 E-value=1.2e+02 Score=19.35 Aligned_cols=22 Identities=18% Similarity=0.404 Sum_probs=19.4
Q ss_pred HHHHhcCCcchHHHHHHhCCCH
Q psy9207 54 LISKAYSSIPNTSLSEFLGVTE 75 (125)
Q Consensus 54 li~~AY~sI~~~~~a~~Lgl~~ 75 (125)
..++-|..++++++|+-.|++.
T Consensus 24 f~~~G~~~~s~~~Ia~~agvs~ 45 (203)
T 3b81_A 24 FIANGYENTTLAFIINKLGISK 45 (203)
T ss_dssp HHHHCSTTCCHHHHHHHHTCCH
T ss_pred HHHcCcccCcHHHHHHHhCCCc
Confidence 4467899999999999999985
No 218
>1ntc_A Protein (nitrogen regulation protein (NTRC)); helix-turn-helix, FIS, four-helix bundle, transcription regulation; NMR {Salmonella typhimurium} SCOP: a.4.1.12
Probab=27.53 E-value=1e+02 Score=18.35 Aligned_cols=36 Identities=8% Similarity=0.078 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHhcCCcchHHHHHHhCCCHHHHHHHHHh
Q psy9207 47 VQKRAISLISKAYSSIPNTSLSEFLGVTEQEAAAIAQA 84 (125)
Q Consensus 47 vR~~~~~li~~AY~sI~~~~~a~~Lgl~~~e~~~~~~~ 84 (125)
=|+-|...+.++-.+ ...+|+.||++..-+-...++
T Consensus 52 E~~~i~~aL~~~~gn--~~~aA~~LGIsr~tL~rklkk 87 (91)
T 1ntc_A 52 ERTLLTTALRHTQGH--KQEAARLLGWGAATLTAKLKE 87 (91)
T ss_dssp HHHHHHHHHHHTTTC--TTHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCC--HHHHHHHHCcCHHHHHHHHHH
Confidence 344555555555444 458999999998776555444
No 219
>2f2e_A PA1607; transcription factor, helix-TRUN-helix, APC5613, structural genomics, PSI, protein structure initiative; HET: GLC; 1.85A {Pseudomonas aeruginosa} SCOP: a.4.5.69
Probab=27.47 E-value=80 Score=20.53 Aligned_cols=51 Identities=12% Similarity=-0.000 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHhCCCHHHH---HHHHHhcCCee
Q psy9207 37 AHIMKALQDEVQKRAISLISKAYSSIPNTSLSEFLGVTEQEA---AAIAQAEGWTV 89 (125)
Q Consensus 37 ~~~i~~l~~~vR~~~~~li~~AY~sI~~~~~a~~Lgl~~~e~---~~~~~~~GW~~ 89 (125)
...+..+.+..+-.|+..+. ...++.++++..||++..-+ ++-..+.|+-.
T Consensus 15 ~~~l~~l~~~w~l~IL~~L~--~g~~~~~eLa~~lgis~~tls~~L~~Le~~GlI~ 68 (146)
T 2f2e_A 15 ARPLDVIGDGWSMLIVRDAF--EGLTRFGEFQKSLGLAKNILAARLRNLVEHGVMV 68 (146)
T ss_dssp TTTHHHHCSSSHHHHHHHHH--TTCCSHHHHHHHHCCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHhCCchHHHHHHHHH--hCCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEE
Confidence 33455566666767777774 57899999999999997544 44455678876
No 220
>2oi8_A Putative regulatory protein SCO4313; TETR, structural genomics, PSI-2, P structure initiative; 2.50A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=27.45 E-value=1e+02 Score=20.74 Aligned_cols=21 Identities=10% Similarity=0.276 Sum_probs=18.8
Q ss_pred HHHhcCCcchHHHHHHhCCCH
Q psy9207 55 ISKAYSSIPNTSLSEFLGVTE 75 (125)
Q Consensus 55 i~~AY~sI~~~~~a~~Lgl~~ 75 (125)
.++-|..+++.++|+-.|++.
T Consensus 30 ~~~G~~~~s~~~IA~~agvs~ 50 (216)
T 2oi8_A 30 ATAGASALSLNAIAKRMGMSG 50 (216)
T ss_dssp HHHCTTSCCHHHHHHHTTCCH
T ss_pred HhcCcccCCHHHHHHHhCCCH
Confidence 367899999999999999985
No 221
>3geu_A Intercellular adhesion protein R; TETR family, intercellular adhesion regulator, IDP00851, DNA repressor, transcription; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=27.43 E-value=94 Score=19.86 Aligned_cols=21 Identities=10% Similarity=0.267 Sum_probs=18.7
Q ss_pred HHHhcCCcchHHHHHHhCCCH
Q psy9207 55 ISKAYSSIPNTSLSEFLGVTE 75 (125)
Q Consensus 55 i~~AY~sI~~~~~a~~Lgl~~ 75 (125)
.++-|..++++++|+-.|++.
T Consensus 17 ~~~G~~~~ti~~IA~~agvs~ 37 (189)
T 3geu_A 17 SEKGYDGTTLDDIAKSVNIKK 37 (189)
T ss_dssp HHHHHHHCCHHHHHHHTTCCH
T ss_pred HHcCcccCCHHHHHHHhCCCH
Confidence 456899999999999999985
No 222
>3qkx_A Uncharacterized HTH-type transcriptional regulato; structural genomics, joint center for structural genomics; HET: MSE; 2.35A {Haemophilus influenzae}
Probab=27.38 E-value=79 Score=20.02 Aligned_cols=22 Identities=9% Similarity=0.154 Sum_probs=19.3
Q ss_pred HHHHhcCCcchHHHHHHhCCCH
Q psy9207 54 LISKAYSSIPNTSLSEFLGVTE 75 (125)
Q Consensus 54 li~~AY~sI~~~~~a~~Lgl~~ 75 (125)
..++-|..++++++|+-.|++.
T Consensus 21 ~~~~G~~~~ti~~Ia~~agvs~ 42 (188)
T 3qkx_A 21 MAREGLNQLSMLKLAKEANVAA 42 (188)
T ss_dssp HHHSCSTTCCHHHHHHHHTCCH
T ss_pred HHhcCcccCCHHHHHHHhCCCc
Confidence 3467899999999999999985
No 223
>2fq4_A Transcriptional regulator, TETR family; DNA-binding protein, bacillu structural genomics, PSI, protein structure initiative; 1.79A {Bacillus cereus} SCOP: a.4.1.9 a.121.1.1
Probab=27.34 E-value=78 Score=20.56 Aligned_cols=30 Identities=10% Similarity=0.276 Sum_probs=22.5
Q ss_pred HHHHHHHHH-HHHhcCCcchHHHHHHhCCCH
Q psy9207 46 EVQKRAISL-ISKAYSSIPNTSLSEFLGVTE 75 (125)
Q Consensus 46 ~vR~~~~~l-i~~AY~sI~~~~~a~~Lgl~~ 75 (125)
.|-+-..++ .++-|..++++++|+-.|++.
T Consensus 16 ~Il~aA~~lf~e~G~~~~t~~~IA~~agvsk 46 (192)
T 2fq4_A 16 AILSASYELLLESGFKAVTVDKIAERAKVSK 46 (192)
T ss_dssp HHHHHHHHHHHHHCTTTCCHHHHHHHHTCCH
T ss_pred HHHHHHHHHHHHcCcccccHHHHHHHcCCCH
Confidence 333333343 568999999999999999985
No 224
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus}
Probab=27.29 E-value=97 Score=18.92 Aligned_cols=39 Identities=15% Similarity=0.312 Sum_probs=28.5
Q ss_pred HHHHHHHHhcCCcchHHHHHHhCCCH---HHHHHHHHhcCCee
Q psy9207 50 RAISLISKAYSSIPNTSLSEFLGVTE---QEAAAIAQAEGWTV 89 (125)
Q Consensus 50 ~~~~li~~AY~sI~~~~~a~~Lgl~~---~e~~~~~~~~GW~~ 89 (125)
.++..+.. ...++..++|..+|++. ..+++-..+.||..
T Consensus 37 ~iL~~l~~-~~~~~~~ela~~l~~~~~tvs~~l~~L~~~gli~ 78 (139)
T 3bja_A 37 GVIQVLAK-SGKVSMSKLIENMGCVPSNMTTMIQRMKRDGYVM 78 (139)
T ss_dssp HHHHHHHH-SCSEEHHHHHHHCSSCCTTHHHHHHHHHHTTSEE
T ss_pred HHHHHHHH-cCCcCHHHHHHHHCCChhHHHHHHHHHHHCCCee
Confidence 44555533 56799999999999985 55556666789986
No 225
>3anp_C Transcriptional repressor, TETR family; all alpha protein, DNA, acyl-COA; HET: DCC DAO; 1.95A {Thermus thermophilus} PDB: 3ang_C*
Probab=26.97 E-value=83 Score=20.54 Aligned_cols=21 Identities=10% Similarity=0.233 Sum_probs=19.0
Q ss_pred HHHhcCCcchHHHHHHhCCCH
Q psy9207 55 ISKAYSSIPNTSLSEFLGVTE 75 (125)
Q Consensus 55 i~~AY~sI~~~~~a~~Lgl~~ 75 (125)
.++-|..++++++|+-.|++.
T Consensus 23 ~~~G~~~~t~~~Ia~~Agvs~ 43 (204)
T 3anp_C 23 RNRGFQETTATEIAKAAHVSR 43 (204)
T ss_dssp HHHCTTTCCHHHHHHHHTSCH
T ss_pred HHcCcccccHHHHHHHcCCch
Confidence 557899999999999999985
No 226
>2ras_A Transcriptional regulator, TETR family; bacterial regulatory proteins, DNA-binding, DNA binding 3-helical bundle fold; 1.80A {Novosphingobium aromaticivorans}
Probab=26.96 E-value=97 Score=20.22 Aligned_cols=40 Identities=8% Similarity=0.136 Sum_probs=27.9
Q ss_pred HHHHHHHHH-HHhcCCcchHHHHHHhCCCH----------HHHHHHHHhcC
Q psy9207 47 VQKRAISLI-SKAYSSIPNTSLSEFLGVTE----------QEAAAIAQAEG 86 (125)
Q Consensus 47 vR~~~~~li-~~AY~sI~~~~~a~~Lgl~~----------~e~~~~~~~~G 86 (125)
+-+-..+++ ++-|..++++++|+-.|++. +++...+....
T Consensus 16 Il~aA~~lf~~~G~~~~s~~~IA~~agvs~~t~Y~~F~sK~~L~~~v~~~~ 66 (212)
T 2ras_A 16 LVDVAQAIVEERGGAGLTLSELAARAGISQANLSRYFETREDLMEAIADYW 66 (212)
T ss_dssp HHHHHHHHHHHHTSSCCCHHHHHHHHTSCHHHHTTTCSSHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCcccCcHHHHHHHhCCCHHHHHHHcCCHHHHHHHHHHHH
Confidence 333333344 57899999999999999985 66666555443
No 227
>3qbm_A TETR transcriptional regulator; DNA/RNA-binding three-helical bundle, structural genomics, J center for structural genomics, JCSG; HET: MSE PGE; 1.80A {Chloroflexus aurantiacus}
Probab=26.91 E-value=95 Score=19.82 Aligned_cols=22 Identities=9% Similarity=0.219 Sum_probs=19.5
Q ss_pred HHHHhcCCcchHHHHHHhCCCH
Q psy9207 54 LISKAYSSIPNTSLSEFLGVTE 75 (125)
Q Consensus 54 li~~AY~sI~~~~~a~~Lgl~~ 75 (125)
..++-|..++++++|+-.|++.
T Consensus 20 ~~~~G~~~~t~~~IA~~agvs~ 41 (199)
T 3qbm_A 20 FNVSGYAGTAISDIMAATGLEK 41 (199)
T ss_dssp HHHHCSTTCCHHHHHHHHTCCH
T ss_pred HHHhCcCcCCHHHHHHHhCCCc
Confidence 4568899999999999999985
No 228
>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}
Probab=26.90 E-value=91 Score=22.51 Aligned_cols=47 Identities=17% Similarity=0.188 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHHHhcCCcchHHHHHHhCCCHHH---HHHHHHhcCCee
Q psy9207 41 KALQDEVQKRAISLISKAYSSIPNTSLSEFLGVTEQE---AAAIAQAEGWTV 89 (125)
Q Consensus 41 ~~l~~~vR~~~~~li~~AY~sI~~~~~a~~Lgl~~~e---~~~~~~~~GW~~ 89 (125)
..|...++-.+++.+.. ..++++++|+-+|+++.- +.......|.--
T Consensus 21 ~~l~~~~~l~i~~~l~~--~~~t~~ela~~~~~~~~~l~r~L~~L~~~g~l~ 70 (335)
T 2r3s_A 21 AAIKAAVELNVFTAISQ--GIESSQSLAQKCQTSERGMRMLCDYLVIIGFMT 70 (335)
T ss_dssp HHHHHHHHTTHHHHHTT--SEECHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHcChHHHHhc--CCCCHHHHHHHhCCCchHHHHHHHHHHhcCCeE
Confidence 56778889999999986 689999999999999644 455566677654
No 229
>3lhq_A Acrab operon repressor (TETR/ACRR family); structural genomics, IDP02616, csgid, DNA-binding, transcription, transcription regulation; 1.56A {Salmonella enterica subsp} PDB: 3bcg_A 2qop_A
Probab=26.63 E-value=1.3e+02 Score=19.36 Aligned_cols=21 Identities=19% Similarity=0.230 Sum_probs=19.0
Q ss_pred HHHhcCCcchHHHHHHhCCCH
Q psy9207 55 ISKAYSSIPNTSLSEFLGVTE 75 (125)
Q Consensus 55 i~~AY~sI~~~~~a~~Lgl~~ 75 (125)
.++-|..++++++|+-.|++.
T Consensus 28 ~~~G~~~~ti~~Ia~~agvs~ 48 (220)
T 3lhq_A 28 SQQGVSATSLAEIANAAGVTR 48 (220)
T ss_dssp HHHCSTTCCHHHHHHHHTCCH
T ss_pred HHcCcccCCHHHHHHHhCCCc
Confidence 468999999999999999985
No 230
>1mkm_A ICLR transcriptional regulator; structural genomics, winged helix-turn-helix, PSI, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.33 d.110.2.2
Probab=26.40 E-value=1.2e+02 Score=21.29 Aligned_cols=40 Identities=13% Similarity=0.327 Sum_probs=30.1
Q ss_pred HHHHHHHHhcCCcchHHHHHHhCCCHHHH---HHHHHhcCCee
Q psy9207 50 RAISLISKAYSSIPNTSLSEFLGVTEQEA---AAIAQAEGWTV 89 (125)
Q Consensus 50 ~~~~li~~AY~sI~~~~~a~~Lgl~~~e~---~~~~~~~GW~~ 89 (125)
+|+.++...=..+++.+++..+|++..-+ .+...+.||-.
T Consensus 12 ~iL~~l~~~~~~~~~~ela~~~gl~~stv~r~l~~L~~~G~v~ 54 (249)
T 1mkm_A 12 EILDFIVKNPGDVSVSEIAEKFNMSVSNAYKYMVVLEEKGFVL 54 (249)
T ss_dssp HHHHHHHHCSSCBCHHHHHHHTTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHhCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCcEE
Confidence 56777776545799999999999997554 44455679986
No 231
>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}
Probab=26.37 E-value=1.3e+02 Score=21.79 Aligned_cols=47 Identities=11% Similarity=0.049 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHHhcCCcchHHHHHHhCCCHHH---HHHHHHhcCCee
Q psy9207 41 KALQDEVQKRAISLISKAYSSIPNTSLSEFLGVTEQE---AAAIAQAEGWTV 89 (125)
Q Consensus 41 ~~l~~~vR~~~~~li~~AY~sI~~~~~a~~Lgl~~~e---~~~~~~~~GW~~ 89 (125)
..+...++-.+++.+.. ..++++++|+.+|+++.- +..+....|--.
T Consensus 23 ~~l~~~~~lgi~~~l~~--~~~t~~ela~~~~~~~~~l~r~Lr~L~~~g~l~ 72 (334)
T 2ip2_A 23 RCVYVATRLGLADLIES--GIDSDETLAAAVGSDAERIHRLMRLLVAFEIFQ 72 (334)
T ss_dssp HHHHHHHHTTHHHHHHT--TCCSHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHcCcHHHHhC--CCCCHHHHHHHhCcCHHHHHHHHHHHHhCCceE
Confidence 56778888899999965 689999999999999744 455566678755
No 232
>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi}
Probab=26.36 E-value=1.1e+02 Score=19.45 Aligned_cols=39 Identities=18% Similarity=0.237 Sum_probs=28.1
Q ss_pred HHHHHHHHhcCCcchHHHHHHhCCCHHHH---HHHHHhcCCee
Q psy9207 50 RAISLISKAYSSIPNTSLSEFLGVTEQEA---AAIAQAEGWTV 89 (125)
Q Consensus 50 ~~~~li~~AY~sI~~~~~a~~Lgl~~~e~---~~~~~~~GW~~ 89 (125)
.++..+.. ...++..++|..+|++..-+ ++-..++||..
T Consensus 57 ~vL~~l~~-~~~~t~~eLa~~l~~~~~~vs~~l~~Le~~Glv~ 98 (161)
T 3e6m_A 57 RLLSSLSA-YGELTVGQLATLGVMEQSTTSRTVDQLVDEGLAA 98 (161)
T ss_dssp HHHHHHHH-HSEEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHh-CCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEE
Confidence 34555544 36899999999999997554 44455689986
No 233
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=26.35 E-value=1.2e+02 Score=18.58 Aligned_cols=39 Identities=10% Similarity=0.176 Sum_probs=27.9
Q ss_pred HHHHHHHHhcCCcchHHHHHHhCCCHHHH---HHHHHhcCCee
Q psy9207 50 RAISLISKAYSSIPNTSLSEFLGVTEQEA---AAIAQAEGWTV 89 (125)
Q Consensus 50 ~~~~li~~AY~sI~~~~~a~~Lgl~~~e~---~~~~~~~GW~~ 89 (125)
.++..+.. ...++..++|..+|++..-+ ++-..+.||..
T Consensus 42 ~iL~~l~~-~~~~t~~ela~~l~~~~~tvs~~l~~L~~~glv~ 83 (140)
T 2nnn_A 42 AALVRLGE-TGPCPQNQLGRLTAMDAATIKGVVERLDKRGLIQ 83 (140)
T ss_dssp HHHHHHHH-HSSBCHHHHHHHTTCCHHHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHH-cCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEE
Confidence 45555543 35899999999999997554 44455679986
No 234
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=26.33 E-value=1.2e+02 Score=18.66 Aligned_cols=40 Identities=5% Similarity=0.076 Sum_probs=28.2
Q ss_pred HHHHHHHHhc-CCcchHHHHHHhCCCHHHHHH---HHHhcCCee
Q psy9207 50 RAISLISKAY-SSIPNTSLSEFLGVTEQEAAA---IAQAEGWTV 89 (125)
Q Consensus 50 ~~~~li~~AY-~sI~~~~~a~~Lgl~~~e~~~---~~~~~GW~~ 89 (125)
.++..+...= ..++..++|..+|++..-+.. -..++||..
T Consensus 35 ~vL~~l~~~~~~~~t~~ela~~l~~~~~tvs~~l~~Le~~Gli~ 78 (139)
T 3eco_A 35 HTLGYLYAHQQDGLTQNDIAKALQRTGPTVSNLLRNLERKKLIY 78 (139)
T ss_dssp HHHHHHHHSTTTCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHhcCCCCcCHHHHHHHhCCCcccHHHHHHHHHHCCCEe
Confidence 4555554432 489999999999999755444 455679986
No 235
>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomic protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=26.24 E-value=1.2e+02 Score=18.61 Aligned_cols=39 Identities=13% Similarity=0.186 Sum_probs=27.2
Q ss_pred HHHHHHHHhcCCcchHHHHHHhCCCHHHH---HHHHHhcCCee
Q psy9207 50 RAISLISKAYSSIPNTSLSEFLGVTEQEA---AAIAQAEGWTV 89 (125)
Q Consensus 50 ~~~~li~~AY~sI~~~~~a~~Lgl~~~e~---~~~~~~~GW~~ 89 (125)
.++..+.. ...++..++|..+|++..-+ ++-..++||..
T Consensus 40 ~iL~~l~~-~~~~t~~ela~~l~~s~~~vs~~l~~Le~~glv~ 81 (142)
T 2fbi_A 40 RVIRILRQ-QGEMESYQLANQACILRPSMTGVLARLERDGIVR 81 (142)
T ss_dssp HHHHHHHH-HCSEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHH-cCCCCHHHHHHHHCCCHhHHHHHHHHHHHCCCEE
Confidence 34444433 45799999999999997554 44455689986
No 236
>2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A
Probab=26.17 E-value=1.3e+02 Score=18.93 Aligned_cols=39 Identities=13% Similarity=0.062 Sum_probs=28.3
Q ss_pred HHHHHHHHhcCCcchHHHHHHhCCCHHHH---HHHHHhcCCee
Q psy9207 50 RAISLISKAYSSIPNTSLSEFLGVTEQEA---AAIAQAEGWTV 89 (125)
Q Consensus 50 ~~~~li~~AY~sI~~~~~a~~Lgl~~~e~---~~~~~~~GW~~ 89 (125)
.++..+.. ...++..++|..+|++..-+ ++-..++||..
T Consensus 51 ~iL~~l~~-~~~~t~~ela~~l~~s~~tvs~~l~~Le~~glv~ 92 (153)
T 2pex_A 51 LVMLVLWE-TDERSVSEIGERLYLDSATLTPLLKRLQAAGLVT 92 (153)
T ss_dssp HHHHHHHH-SCSEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHh-CCCcCHHHHHHHhCCCcccHHHHHHHHHHCCCEe
Confidence 44555544 57899999999999997554 44456689986
No 237
>2d5u_A N-glycanase 1; pngase, hydrolase; NMR {Mus musculus} SCOP: d.314.1.1
Probab=26.10 E-value=1.2e+02 Score=19.77 Aligned_cols=74 Identities=15% Similarity=0.063 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHhCC-CHHHHHHHHHhcCCeec-CceeeccCCCCCCCCCCCChHHHHH
Q psy9207 38 HIMKALQDEVQKRAISLISKAYSSIPNTSLSEFLGV-TEQEAAAIAQAEGWTVD-KVYTQPVKKPEEYATPNITDDQLYI 115 (125)
Q Consensus 38 ~~i~~l~~~vR~~~~~li~~AY~sI~~~~~a~~Lgl-~~~e~~~~~~~~GW~~d-~~~~~p~~~~~~~~~~~~~~~ql~~ 115 (125)
.-+..|...+.+-+-.=-.-=|++|.++..+=.=-+ +-+...++....||+.+ +.+++|... ...+|++
T Consensus 35 ~a~~tL~kil~NIl~~P~e~KyRkIRl~N~~f~~~V~~~~Ga~e~L~a~GF~~~~~~lvlp~~~---------~~~~l~~ 105 (124)
T 2d5u_A 35 EASKLLLTYADNILRNPSDEKYRSIRIGNTAFSTRLLPVRGAVECLFEMGFEEGETHLIFPKKA---------SVEQLQK 105 (124)
T ss_dssp HHHHHHHHHHHHHHHSSSCGGGSEEECCCHHHHHTTSSSTTHHHHHHHHTCBCCSSEEECCTTS---------CHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCcccceeeecCCHHHHHHhcCCccHHHHHHHcccccCCCeeecCCCC---------CHHHHHH
Confidence 333444433333333333456889988764322222 12345777888999987 667776432 3466666
Q ss_pred HhhHH
Q psy9207 116 LTQYV 120 (125)
Q Consensus 116 Lt~~v 120 (125)
+-+++
T Consensus 106 ~~d~L 110 (124)
T 2d5u_A 106 IRDLI 110 (124)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66554
No 238
>1sgm_A Putative HTH-type transcriptional regulator YXAF; structural genomics, PSI, protein structure initiative; 2.00A {Bacillus subtilis} SCOP: a.4.1.9 a.121.1.1
Probab=25.97 E-value=70 Score=20.35 Aligned_cols=21 Identities=10% Similarity=0.064 Sum_probs=18.1
Q ss_pred HHHHhcCCcchHHHHHHhCCC
Q psy9207 54 LISKAYSSIPNTSLSEFLGVT 74 (125)
Q Consensus 54 li~~AY~sI~~~~~a~~Lgl~ 74 (125)
+.++-|..++++++|+-.|++
T Consensus 19 ~~~~G~~~~t~~~Ia~~agvs 39 (191)
T 1sgm_A 19 SQLQGYHATGLNQIVKESGAP 39 (191)
T ss_dssp HHHHCTTTCCHHHHHHHHCCC
T ss_pred HHHcCccccCHHHHHHHHCCC
Confidence 345789999999999999995
No 239
>1d5y_A ROB transcription factor; protein-DNA complex, DNA, transcription/DNA complex; HET: DNA; 2.70A {Escherichia coli} SCOP: a.4.1.8 a.4.1.8 d.60.1.2
Probab=25.97 E-value=99 Score=21.89 Aligned_cols=41 Identities=5% Similarity=0.129 Sum_probs=28.8
Q ss_pred HHHHHHHHHhc-CCcchHHHHHHhCCCHHHHHHHHHhc-CCee
Q psy9207 49 KRAISLISKAY-SSIPNTSLSEFLGVTEQEAAAIAQAE-GWTV 89 (125)
Q Consensus 49 ~~~~~li~~AY-~sI~~~~~a~~Lgl~~~e~~~~~~~~-GW~~ 89 (125)
+++.+.|...| ..++++++|..+|+|..-+.....+. |-++
T Consensus 6 ~~~~~~i~~~~~~~~~~~~la~~~~~s~~~l~r~f~~~~g~s~ 48 (292)
T 1d5y_A 6 RDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAI 48 (292)
T ss_dssp HHHHHHHHTTSSSSCCCHHHHTTTSSCHHHHHHHHHHHHSSCH
T ss_pred HHHHHHHHhCCCCCCCHHHHHHHHCcCHHHHHHHHHHHHCcCH
Confidence 45566666666 46999999999999987766655543 5544
No 240
>2o7t_A Transcriptional regulator; transcription regulator, DNA/RNA-binding 3-helical bundle FO turn helix motif, HTH motif; HET: UNL; 2.10A {Corynebacterium glutamicum} SCOP: a.4.1.9 a.121.1.1
Probab=25.85 E-value=1.3e+02 Score=19.39 Aligned_cols=21 Identities=19% Similarity=0.186 Sum_probs=18.5
Q ss_pred HHHhcCCcchHHHHHHhCCCH
Q psy9207 55 ISKAYSSIPNTSLSEFLGVTE 75 (125)
Q Consensus 55 i~~AY~sI~~~~~a~~Lgl~~ 75 (125)
.++-|..++++++|+-.|++.
T Consensus 22 ~~~G~~~~t~~~IA~~agvs~ 42 (199)
T 2o7t_A 22 RTHHHDSLTMENIAEQAGVGV 42 (199)
T ss_dssp HHSCGGGCCHHHHHHHHTCCH
T ss_pred HHCCCccCCHHHHHHHhCCCH
Confidence 356799999999999999985
No 241
>3vpr_A Transcriptional regulator, TETR family; all alpha, helix-turn-helix, transcriptional repressor, DNA protein; 2.27A {Thermus thermophilus}
Probab=25.82 E-value=75 Score=20.51 Aligned_cols=22 Identities=23% Similarity=0.487 Sum_probs=19.6
Q ss_pred HHHHhcCCcchHHHHHHhCCCH
Q psy9207 54 LISKAYSSIPNTSLSEFLGVTE 75 (125)
Q Consensus 54 li~~AY~sI~~~~~a~~Lgl~~ 75 (125)
..++-|..++++++|+-.|++.
T Consensus 16 f~~~G~~~~s~~~IA~~agvsk 37 (190)
T 3vpr_A 16 FTEKGYEATSVQDLAQALGLSK 37 (190)
T ss_dssp HHHHCSTTCCHHHHHHHHTCCH
T ss_pred HHHhCcccCCHHHHHHHhCCCH
Confidence 4578899999999999999985
No 242
>1v4r_A Transcriptional repressor; helix-turn-helix, winged-helix, gene regulation; NMR {Streptomyces} SCOP: a.4.5.6
Probab=25.60 E-value=20 Score=21.83 Aligned_cols=50 Identities=10% Similarity=0.098 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCc-chHHHHHHhCCCHHHHHHH---HHhcCCee
Q psy9207 40 MKALQDEVQKRAISLISKAYSSI-PNTSLSEFLGVTEQEAAAI---AQAEGWTV 89 (125)
Q Consensus 40 i~~l~~~vR~~~~~li~~AY~sI-~~~~~a~~Lgl~~~e~~~~---~~~~GW~~ 89 (125)
...+.+.+|.+|....-..=..+ +..++|..||+|..-+.+. ..+.|+..
T Consensus 13 ~~~l~~~i~~~I~~~~l~~g~~lps~~eLa~~~~vSr~tvr~al~~L~~~Gli~ 66 (102)
T 1v4r_A 13 YADVATHFRTLIKSGELAPGDTLPSVADIRAQFGVAAKTVSRALAVLKSEGLVS 66 (102)
T ss_dssp HHHHHHHHHHHTTTTSCCTTSBCCCHHHHHHHSSSCTTHHHHHTTTTTTSSCCE
T ss_pred HHHHHHHHHHHHHhCCCCCcCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEE
Confidence 35666777777776433444667 8999999999996444444 45578876
No 243
>2hoe_A N-acetylglucosamine kinase; TM1224, structural genomics, PSI-2, protein structure initiative, joint center structural genomics, JCSG; 2.46A {Thermotoga maritima} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=25.37 E-value=33 Score=26.00 Aligned_cols=48 Identities=27% Similarity=0.364 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHhcCCcchHHHHHHhCCCHHHHHH---HHHhcCCeec
Q psy9207 41 KALQDEVQKRAISLISKAYSSIPNTSLSEFLGVTEQEAAA---IAQAEGWTVD 90 (125)
Q Consensus 41 ~~l~~~vR~~~~~li~~AY~sI~~~~~a~~Lgl~~~e~~~---~~~~~GW~~d 90 (125)
+.+++.-+.+|++++. ...+|..++++.+|||..-+.. -..+.|+-..
T Consensus 15 ~~~~~~~~~~il~~l~--~~~~sr~~la~~~gls~~tv~~~v~~L~~~gli~~ 65 (380)
T 2hoe_A 15 KSVRAENISRILKRIM--KSPVSRVELAEELGLTKTTVGEIAKIFLEKGIVVE 65 (380)
T ss_dssp -------CCCSHHHHH--HSCBCHHHHHHHHTCCHHHHHHHHHHHHHHTSEEE
T ss_pred hhHHHHHHHHHHHHHH--cCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEe
Confidence 4455666777899998 7999999999999999744433 3444677653
No 244
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=25.27 E-value=1e+02 Score=17.55 Aligned_cols=39 Identities=15% Similarity=0.317 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHhc---CCcchHHHHHHh-CCCHHHHHHHHHh
Q psy9207 46 EVQKRAISLISKAY---SSIPNTSLSEFL-GVTEQEAAAIAQA 84 (125)
Q Consensus 46 ~vR~~~~~li~~AY---~sI~~~~~a~~L-gl~~~e~~~~~~~ 84 (125)
.-|.+|++...+-+ ..+.++.+|... |+|+.|+...|.+
T Consensus 6 ~~R~~Il~~~l~~~~~~~~~dl~~la~~t~G~SGADi~~l~~e 48 (78)
T 3kw6_A 6 EARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTE 48 (78)
T ss_dssp HHHHHHHHHHHTTSEECTTCCHHHHHHTCTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCCCccCHHHHHHHcCCCCHHHHHHHHHH
Confidence 34677777666665 356677766644 6898888877764
No 245
>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus}
Probab=25.13 E-value=1.3e+02 Score=18.70 Aligned_cols=32 Identities=6% Similarity=0.064 Sum_probs=24.1
Q ss_pred hcCCcchHHHHHHhCCCHHHH---HHHHHhcCCee
Q psy9207 58 AYSSIPNTSLSEFLGVTEQEA---AAIAQAEGWTV 89 (125)
Q Consensus 58 AY~sI~~~~~a~~Lgl~~~e~---~~~~~~~GW~~ 89 (125)
.-..++..++|..||++..-+ ++-..+.|+-.
T Consensus 28 ~~~~~s~~ela~~l~is~~tv~~~l~~Le~~Gli~ 62 (139)
T 2x4h_A 28 SGEGAKINRIAKDLKIAPSSVFEEVSHLEEKGLVK 62 (139)
T ss_dssp TTSCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred cCCCcCHHHHHHHhCCChHHHHHHHHHHHHCCCEE
Confidence 456899999999999996444 44455678876
No 246
>4gif_A Polycystic kidney disease 2-like 1 protein; coiled-coil, trimer, Trp channel, transient receptor potenti channel, polycystic kidney disease (PKD); 2.80A {Homo sapiens}
Probab=25.12 E-value=31 Score=18.75 Aligned_cols=17 Identities=35% Similarity=0.614 Sum_probs=14.7
Q ss_pred ChHHHHHHhhHHHhhcC
Q psy9207 109 TDDQLYILTQYVSFLEN 125 (125)
Q Consensus 109 ~~~ql~~Lt~~v~fLEn 125 (125)
+.++++.|++=|..||+
T Consensus 5 s~eeF~~L~rRVlqlE~ 21 (45)
T 4gif_A 5 SGEEFYMLTRRVLQLET 21 (45)
T ss_dssp CHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHH
Confidence 67899999999988884
No 247
>3c7j_A Transcriptional regulator, GNTR family; structural genomics, PSI-2, protein structure initiative, midwest center for STR genomics; HET: MSE; 2.10A {Pseudomonas syringae PV}
Probab=24.99 E-value=1.8e+02 Score=20.35 Aligned_cols=47 Identities=15% Similarity=0.249 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHhcCCcchHHHHHHhCCCH---HHHHHHHHhcCCee
Q psy9207 43 LQDEVQKRAISLISKAYSSIPNTSLSEFLGVTE---QEAAAIAQAEGWTV 89 (125)
Q Consensus 43 l~~~vR~~~~~li~~AY~sI~~~~~a~~Lgl~~---~e~~~~~~~~GW~~ 89 (125)
+.+.+|+.|....=+.=..|+..++|..||+|. -|+.......|+..
T Consensus 31 v~~~L~~~I~~g~l~pG~~L~e~~La~~lgVSr~~VReAL~~L~~~Glv~ 80 (237)
T 3c7j_A 31 IEEKLRNAIIDGSLPSGTALRQQELATLFGVSRMPVREALRQLEAQSLLR 80 (237)
T ss_dssp HHHHHHHHHHTSSSCTTCBCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHhCCCCCcCeeCHHHHHHHHCCCHHHHHHHHHHHHHCCCEE
Confidence 667788888765556667899999999999996 44555566789976
No 248
>2xi8_A Putative transcription regulator; HTH DNA-binding motif; HET: GOL; 1.21A {Enterococcus faecalis} PDB: 2gzu_A 1utx_A* 2xj3_A 2xiu_A
Probab=24.96 E-value=74 Score=16.73 Aligned_cols=24 Identities=25% Similarity=0.419 Sum_probs=17.9
Q ss_pred CCcchHHHHHHhCCCHHHHHHHHH
Q psy9207 60 SSIPNTSLSEFLGVTEQEAAAIAQ 83 (125)
Q Consensus 60 ~sI~~~~~a~~Lgl~~~e~~~~~~ 83 (125)
..++..++|..+|++..-+..+..
T Consensus 13 ~g~s~~~lA~~~gis~~~i~~~e~ 36 (66)
T 2xi8_A 13 KKISQSELAALLEVSRQTINGIEK 36 (66)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHc
Confidence 467888888899988776666544
No 249
>4hku_A LMO2814 protein, TETR transcriptional regulator; structural genomics, PSI-biology; 2.30A {Listeria monocytogenes}
Probab=24.89 E-value=64 Score=20.86 Aligned_cols=32 Identities=13% Similarity=0.099 Sum_probs=24.7
Q ss_pred HHHHhcCCcchHHHHHHhCCCH----------HHHHHHHHhc
Q psy9207 54 LISKAYSSIPNTSLSEFLGVTE----------QEAAAIAQAE 85 (125)
Q Consensus 54 li~~AY~sI~~~~~a~~Lgl~~----------~e~~~~~~~~ 85 (125)
..++-|...+++++|+-.|++. +++...+..+
T Consensus 20 f~~~G~~~~s~~~IA~~aGvs~~tlY~~F~sKe~L~~a~~~~ 61 (178)
T 4hku_A 20 IYEKGMEKTTLYDIASNLNVTHAALYKHYRNKEDLFQKLALR 61 (178)
T ss_dssp HHHHCGGGCCHHHHHHHTTSCGGGGGGTCSSHHHHHHHHHHH
T ss_pred HHHhCcccccHHHHHHHhCcCHhHHHHHCCCHHHHHHHHHHH
Confidence 4567899999999999999974 6666555443
No 250
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3}
Probab=24.79 E-value=1.3e+02 Score=18.70 Aligned_cols=39 Identities=15% Similarity=0.055 Sum_probs=28.2
Q ss_pred HHHHHHHHhcCCcchHHHHHHhCCCHHHH---HHHHHhcCCee
Q psy9207 50 RAISLISKAYSSIPNTSLSEFLGVTEQEA---AAIAQAEGWTV 89 (125)
Q Consensus 50 ~~~~li~~AY~sI~~~~~a~~Lgl~~~e~---~~~~~~~GW~~ 89 (125)
.++..+.. ...++..++|..+|++..-+ ++-..+.||..
T Consensus 44 ~iL~~l~~-~~~~t~~ela~~l~~~~~~vs~~l~~Le~~Glv~ 85 (152)
T 3bj6_A 44 AILEGLSL-TPGATAPQLGAALQMKRQYISRILQEVQRAGLIE 85 (152)
T ss_dssp HHHHHHHH-STTEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHh-CCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCee
Confidence 45555543 46899999999999997554 44455689986
No 251
>2lfc_A Fumarate reductase, flavoprotein subunit; structural genomics, northeast structural genomics consortiu PSI-biology; NMR {Lactobacillus plantarum}
Probab=24.72 E-value=66 Score=21.34 Aligned_cols=22 Identities=18% Similarity=0.104 Sum_probs=17.5
Q ss_pred cchHHHHHHhCCCHHHHHHHHH
Q psy9207 62 IPNTSLSEFLGVTEQEAAAIAQ 83 (125)
Q Consensus 62 I~~~~~a~~Lgl~~~e~~~~~~ 83 (125)
=+++++|..+|++.+.+.+.+.
T Consensus 96 dTleeLA~~~gid~~~L~~TV~ 117 (160)
T 2lfc_A 96 GSLESAAEQAGIVVDELVQTVK 117 (160)
T ss_dssp SSHHHHHHHHTCCHHHHHHHHH
T ss_pred CCHHHHHHHhCCCHHHHHHHHH
Confidence 3699999999999877766544
No 252
>3f1b_A TETR-like transcriptional regulator; APC5888, rhodococcus SP. RHA1, structural genomics, PS protein structure initiative; 2.40A {Rhodococcus}
Probab=24.63 E-value=1.1e+02 Score=19.63 Aligned_cols=22 Identities=0% Similarity=0.185 Sum_probs=19.1
Q ss_pred HHHHhcCCcchHHHHHHhCCCH
Q psy9207 54 LISKAYSSIPNTSLSEFLGVTE 75 (125)
Q Consensus 54 li~~AY~sI~~~~~a~~Lgl~~ 75 (125)
..++-|..+++.++|+-.|++.
T Consensus 27 ~~~~G~~~~ti~~Ia~~agvs~ 48 (203)
T 3f1b_A 27 FSDRGFHETSMDAIAAKAEISK 48 (203)
T ss_dssp HHHHCTTTCCHHHHHHHTTSCH
T ss_pred HHHcCcccccHHHHHHHhCCch
Confidence 3456899999999999999985
No 253
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=24.56 E-value=1.3e+02 Score=18.54 Aligned_cols=38 Identities=13% Similarity=0.245 Sum_probs=26.8
Q ss_pred HHHHHHHhcCCcchHHHHHHhCCCHHHH---HHHHHhcCCee
Q psy9207 51 AISLISKAYSSIPNTSLSEFLGVTEQEA---AAIAQAEGWTV 89 (125)
Q Consensus 51 ~~~li~~AY~sI~~~~~a~~Lgl~~~e~---~~~~~~~GW~~ 89 (125)
++..+.. ...++..++|..||++..-+ ++-..+.||..
T Consensus 34 iL~~l~~-~~~~t~~~la~~l~~s~~~vs~~l~~Le~~gli~ 74 (144)
T 1lj9_A 34 YLVRVCE-NPGIIQEKIAELIKVDRTTAARAIKRLEEQGFIY 74 (144)
T ss_dssp HHHHHHH-STTEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHH-CcCcCHHHHHHHHCCCHhHHHHHHHHHHHCCCEE
Confidence 3444433 35799999999999997554 44455679986
No 254
>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcript regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A 4gxo_A
Probab=24.53 E-value=69 Score=20.05 Aligned_cols=39 Identities=10% Similarity=0.054 Sum_probs=27.9
Q ss_pred HHHHHHHHhcCCcchHHHHHHhCCCHHHH---HHHHHhcCCee
Q psy9207 50 RAISLISKAYSSIPNTSLSEFLGVTEQEA---AAIAQAEGWTV 89 (125)
Q Consensus 50 ~~~~li~~AY~sI~~~~~a~~Lgl~~~e~---~~~~~~~GW~~ 89 (125)
.++..+.. ...++..++|..+|++..-+ ++-..++||..
T Consensus 40 ~vL~~l~~-~~~~t~~eLa~~l~~~~~tvs~~l~~L~~~Glv~ 81 (140)
T 3hsr_A 40 IVLMAIEN-DEKLNIKKLGERVFLDSGTLTPLLKKLEKKDYVV 81 (140)
T ss_dssp HHHHHSCT-TCEEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHH-cCCcCHHHHHHHHCCChhhHHHHHHHHHHCCCeE
Confidence 34444433 57899999999999997554 44455689986
No 255
>2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D
Probab=24.28 E-value=92 Score=19.34 Aligned_cols=39 Identities=13% Similarity=0.152 Sum_probs=27.6
Q ss_pred HHHHHHHHhc--CCcchHHHHHHhCCCHHHH---HHHHHhcCCee
Q psy9207 50 RAISLISKAY--SSIPNTSLSEFLGVTEQEA---AAIAQAEGWTV 89 (125)
Q Consensus 50 ~~~~li~~AY--~sI~~~~~a~~Lgl~~~e~---~~~~~~~GW~~ 89 (125)
.++..+.. . ..++..++|..||++..-+ ++-..++||..
T Consensus 41 ~vL~~l~~-~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~ 84 (127)
T 2frh_A 41 AVLTYISE-NKEKEYYLKDIINHLNYKQPQVVKAVKILSQEDYFD 84 (127)
T ss_dssp HHHHHHHH-TCCSEEEHHHHHHHSSSHHHHHHHHHHHHHHTTSSC
T ss_pred HHHHHHHh-ccCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEE
Confidence 44555544 3 6799999999999986554 44455678876
No 256
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=24.19 E-value=1.5e+02 Score=19.46 Aligned_cols=51 Identities=10% Similarity=0.071 Sum_probs=31.3
Q ss_pred CcchHHHHHHhCCCHHHHHHHHHhcCCeecCceeeccCCCCCCCCCCC-ChHHHHHHhhHH
Q psy9207 61 SIPNTSLSEFLGVTEQEAAAIAQAEGWTVDKVYTQPVKKPEEYATPNI-TDDQLYILTQYV 120 (125)
Q Consensus 61 sI~~~~~a~~Lgl~~~e~~~~~~~~GW~~d~~~~~p~~~~~~~~~~~~-~~~ql~~Lt~~v 120 (125)
..++.++|..+|++..-+.-|.. -+.+.|..... ..-.. +++++..|-.+.
T Consensus 16 ~~~I~evA~~~gvs~~tLR~Ye~-------~Gll~p~~r~~--~g~R~Y~~~dl~~l~~I~ 67 (148)
T 3gpv_A 16 YYTIGQVAKMQHLTISQIRYYDK-------QGLFPFLQRNE--KGDRIFNEEALKYLEMIL 67 (148)
T ss_dssp CBCHHHHHHHTTCCHHHHHHHHH-------TTCCTTCEECT--TCCEEBCHHHHHHHHHHH
T ss_pred ceeHHHHHHHHCcCHHHHHHHHH-------CCCCCCCcCCC--CCCeecCHHHHHHHHHHH
Confidence 47899999999999887776644 23333322111 11122 777777776543
No 257
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=24.17 E-value=1.1e+02 Score=17.43 Aligned_cols=44 Identities=7% Similarity=0.066 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHhc-CCcchHHHHHHh-----CCCHHH---HHHHHHhcCCee
Q psy9207 46 EVQKRAISLISKAY-SSIPNTSLSEFL-----GVTEQE---AAAIAQAEGWTV 89 (125)
Q Consensus 46 ~vR~~~~~li~~AY-~sI~~~~~a~~L-----gl~~~e---~~~~~~~~GW~~ 89 (125)
.-|..|+.++...- ..+++++++..| +++..- ..+...+.|+-.
T Consensus 17 ~~r~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Glv~ 69 (83)
T 2fu4_A 17 LPRLKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIVT 69 (83)
T ss_dssp HHHHHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSEE
T ss_pred HHHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCeE
Confidence 45778999998765 689999999999 998644 345556678765
No 258
>2hyt_A TETR-family transcriptional regulator; structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.64A {Pectobacterium atrosepticum}
Probab=24.10 E-value=1e+02 Score=20.00 Aligned_cols=21 Identities=14% Similarity=0.254 Sum_probs=18.8
Q ss_pred HHHhcCCcchHHHHHHhCCCH
Q psy9207 55 ISKAYSSIPNTSLSEFLGVTE 75 (125)
Q Consensus 55 i~~AY~sI~~~~~a~~Lgl~~ 75 (125)
.++-|...+++++|+-.|++.
T Consensus 26 ~~~G~~~~s~~~IA~~aGvs~ 46 (197)
T 2hyt_A 26 SERGYADTSMDDLTAQASLTR 46 (197)
T ss_dssp HHHCTTTCCHHHHHHHHTCCT
T ss_pred HHhCcccCCHHHHHHHhCCCH
Confidence 457899999999999999974
No 259
>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structura genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3}
Probab=24.08 E-value=1.2e+02 Score=18.99 Aligned_cols=39 Identities=13% Similarity=0.181 Sum_probs=28.0
Q ss_pred HHHHHHHHhcCCcchHHHHHHhCCCHHHH---HHHHHhcCCee
Q psy9207 50 RAISLISKAYSSIPNTSLSEFLGVTEQEA---AAIAQAEGWTV 89 (125)
Q Consensus 50 ~~~~li~~AY~sI~~~~~a~~Lgl~~~e~---~~~~~~~GW~~ 89 (125)
.++..+.. ...++..++|..+|++..-+ ++-..+.||..
T Consensus 47 ~iL~~l~~-~~~~t~~ela~~l~i~~~tvs~~l~~Le~~Glv~ 88 (155)
T 3cdh_A 47 RVLACLVD-NDAMMITRLAKLSLMEQSRMTRIVDQMDARGLVT 88 (155)
T ss_dssp HHHHHHSS-CSCBCHHHHHHHTTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHH-CCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEE
Confidence 45555543 46799999999999997554 44455679986
No 260
>4g6q_A Putative uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; 2.08A {Kribbella flavida}
Probab=24.05 E-value=80 Score=21.45 Aligned_cols=52 Identities=19% Similarity=0.245 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHhC-CCHHHHHH---HHHhcCCe
Q psy9207 35 DIAHIMKALQDEVQKRAISLISKAYSSIPNTSLSEFLG-VTEQEAAA---IAQAEGWT 88 (125)
Q Consensus 35 ~~~~~i~~l~~~vR~~~~~li~~AY~sI~~~~~a~~Lg-l~~~e~~~---~~~~~GW~ 88 (125)
....+++.|.+-+|-+|+.++.. ...+..+++..|| ++..-+-. ...+.|..
T Consensus 12 ~~~~~~~~La~P~Rl~il~~L~~--~~~~~~~l~~~l~~~~~~~~s~Hl~~L~~aglv 67 (182)
T 4g6q_A 12 ATSSLVDLLHHPLRWRITQLLIG--RSLTTRELAELLPDVATTTLYRQVGILVKAGVL 67 (182)
T ss_dssp CSHHHHHHTTSHHHHHHHHHTTT--SCEEHHHHHHHCTTBCHHHHHHHHHHHHHHTSE
T ss_pred HHHHHHHHhCCHHHHHHHHHHHh--CCCCHHHHHHHhcCCCHHHHHHHHHHHHHCCCe
Confidence 34567889999999999999964 6889999999997 88544432 23344665
No 261
>2jrt_A Uncharacterized protein; solution, structure, NESG, PSI, target RHR5, structural genomics, protein structure initiative; NMR {Rhodobacter sphaeroides}
Probab=24.02 E-value=1.3e+02 Score=18.44 Aligned_cols=35 Identities=17% Similarity=0.103 Sum_probs=28.1
Q ss_pred HHHHHHHHhcCCcchHHHHHHhCCCHHHHHHHHHh
Q psy9207 50 RAISLISKAYSSIPNTSLSEFLGVTEQEAAAIAQA 84 (125)
Q Consensus 50 ~~~~li~~AY~sI~~~~~a~~Lgl~~~e~~~~~~~ 84 (125)
++.-..+-....+++.++|.-.|++.+++..+...
T Consensus 38 Kl~VV~~~~~g~~s~~e~arry~Is~s~i~~W~r~ 72 (95)
T 2jrt_A 38 KAAVVKAVIHGLITEREALDRYSLSEEEFALWRSA 72 (95)
T ss_dssp HHHHHHHHHTTSSCHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHhCCCHHHHHHHHHH
Confidence 33444456678899999999999999999998765
No 262
>3mq0_A Transcriptional repressor of the blcabc operon; helix-turn-helix, GAF fold, transcription repressor; 1.79A {Agrobacterium tumefaciens}
Probab=23.95 E-value=1.1e+02 Score=22.03 Aligned_cols=40 Identities=15% Similarity=0.287 Sum_probs=31.3
Q ss_pred HHHHHHHHhcCCcchHHHHHHhCCCHHH---HHHHHHhcCCee
Q psy9207 50 RAISLISKAYSSIPNTSLSEFLGVTEQE---AAAIAQAEGWTV 89 (125)
Q Consensus 50 ~~~~li~~AY~sI~~~~~a~~Lgl~~~e---~~~~~~~~GW~~ 89 (125)
+|+++++..=..+++.+++.-+|++..- +..-..+.||-.
T Consensus 34 ~IL~~l~~~~~~ltl~eia~~lgl~ksTv~RlL~tL~~~G~v~ 76 (275)
T 3mq0_A 34 RILDLVAGSPRDLTAAELTRFLDLPKSSAHGLLAVMTELDLLA 76 (275)
T ss_dssp HHHHHHHHCSSCEEHHHHHHHHTCC--CHHHHHHHHHHTTSEE
T ss_pred HHHHHHhhCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEE
Confidence 5888888877789999999999998644 555566789987
No 263
>2l48_A N-acetylmuramoyl-L-alanine amidase; bacillus anthracis gamma- phage endolysin, PLYG, cell WALL B domain, homodimer, ACT-type domain; NMR {Bacillus phage gamma}
Probab=23.86 E-value=1.3e+02 Score=18.41 Aligned_cols=45 Identities=11% Similarity=0.152 Sum_probs=27.5
Q ss_pred HHHHHHHHHhcCCeecCceeeccCCCCCCCCCCCChHHHHHHhhHHH
Q psy9207 75 EQEAAAIAQAEGWTVDKVYTQPVKKPEEYATPNITDDQLYILTQYVS 121 (125)
Q Consensus 75 ~~e~~~~~~~~GW~~d~~~~~p~~~~~~~~~~~~~~~ql~~Lt~~v~ 121 (125)
..|+.....++||+= .++....--.--.+.+.++.||+++|.++-
T Consensus 32 v~ev~~am~~~g~~g--kii~~~dGl~y~~T~~~s~~eLdk~t~wLD 76 (85)
T 2l48_A 32 TPDVMGALTSLKMTA--DFILQSDGLTYFISKPTSDAQLKAMKEYLD 76 (85)
T ss_dssp HHHHHHHHHHTTCCE--EEEECTTSCEEEEECCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCceE--EEEECCCceEEEEeCCCCHHHHHHHHHHHh
Confidence 488899999999974 333211100000233448899999998763
No 264
>2g7s_A Transcriptional regulator, TETR family; APC5906, PSI, protein structure initiat midwest center for structural genomics, MCSG; HET: MSE; 1.40A {Agrobacterium tumefaciens str} SCOP: a.4.1.9 a.121.1.1
Probab=23.86 E-value=1.4e+02 Score=18.77 Aligned_cols=22 Identities=23% Similarity=0.561 Sum_probs=19.4
Q ss_pred HHHHhcCCcchHHHHHHhCCCH
Q psy9207 54 LISKAYSSIPNTSLSEFLGVTE 75 (125)
Q Consensus 54 li~~AY~sI~~~~~a~~Lgl~~ 75 (125)
..++-|..++++++|+-.|++.
T Consensus 21 ~~~~G~~~~ti~~Ia~~agvs~ 42 (194)
T 2g7s_A 21 IIRGGYNSFSYADISQVVGIRN 42 (194)
T ss_dssp HHHHCGGGCCHHHHHHHHCCCH
T ss_pred HHHcCcccCCHHHHHHHhCCCc
Confidence 4467899999999999999985
No 265
>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5
Probab=23.83 E-value=1.2e+02 Score=18.08 Aligned_cols=37 Identities=14% Similarity=0.239 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHhcCCcchHHHHHHhCCCHHHHHHHHHh
Q psy9207 45 DEVQKRAISLISKAYSSIPNTSLSEFLGVTEQEAAAIAQA 84 (125)
Q Consensus 45 ~~vR~~~~~li~~AY~sI~~~~~a~~Lgl~~~e~~~~~~~ 84 (125)
...|.+++.+.. ...+..++|..||++..-+..+...
T Consensus 20 ~~~r~~i~~~~~---~g~s~~~ia~~lgis~~Tv~~w~~~ 56 (128)
T 1pdn_C 20 NNIRLKIVEMAA---DGIRPCVISRQLRVSHGCVSKILNR 56 (128)
T ss_dssp HHHHHHHHHHHH---TTCCHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHH---cCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 456777877764 4578999999999998777666553
No 266
>1r69_A Repressor protein CI; gene regulating protein; 2.00A {Phage 434} SCOP: a.35.1.2 PDB: 1pra_A 1per_L 1rpe_L* 2or1_L* 1r63_A 2r63_A 1sq8_A
Probab=23.80 E-value=73 Score=16.98 Aligned_cols=24 Identities=17% Similarity=0.324 Sum_probs=18.8
Q ss_pred CCcchHHHHHHhCCCHHHHHHHHH
Q psy9207 60 SSIPNTSLSEFLGVTEQEAAAIAQ 83 (125)
Q Consensus 60 ~sI~~~~~a~~Lgl~~~e~~~~~~ 83 (125)
..++..++|..+|++..-+..+..
T Consensus 13 ~glsq~~lA~~~gis~~~i~~~e~ 36 (69)
T 1r69_A 13 LGLNQAELAQKVGTTQQSIEQLEN 36 (69)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHc
Confidence 468889999999999877766544
No 267
>2zb9_A Putative transcriptional regulator; transcription regulator, TETR family, helix-turn-helix, DNA- binding, transcription regulation; 2.25A {Streptomyces coelicolor}
Probab=23.77 E-value=95 Score=20.38 Aligned_cols=22 Identities=14% Similarity=0.348 Sum_probs=19.3
Q ss_pred HHHHhcCCcchHHHHHHhCCCH
Q psy9207 54 LISKAYSSIPNTSLSEFLGVTE 75 (125)
Q Consensus 54 li~~AY~sI~~~~~a~~Lgl~~ 75 (125)
..++-|..++++++|+-.|++.
T Consensus 36 f~~~G~~~~t~~~IA~~agvs~ 57 (214)
T 2zb9_A 36 LLTEGTAQLTFERVARVSGVSK 57 (214)
T ss_dssp HHHHCGGGCCHHHHHHHHCCCH
T ss_pred HHHhCcccCCHHHHHHHHCCCH
Confidence 3457899999999999999985
No 268
>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*
Probab=23.71 E-value=1.7e+02 Score=21.21 Aligned_cols=47 Identities=13% Similarity=0.070 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHHHhcCCcchHHHHHHhCCCHHHH---HHHHHhcCCee
Q psy9207 41 KALQDEVQKRAISLISKAYSSIPNTSLSEFLGVTEQEA---AAIAQAEGWTV 89 (125)
Q Consensus 41 ~~l~~~vR~~~~~li~~AY~sI~~~~~a~~Lgl~~~e~---~~~~~~~GW~~ 89 (125)
..|...++-.+++.+.. ..++.+++|.-+|+++.-+ ..+....|--.
T Consensus 20 ~~l~~a~~lglf~~l~~--g~~t~~elA~~~~~~~~~l~rlLr~l~~~gl~~ 69 (332)
T 3i53_A 20 MAVRVAATLRVADHIAA--GHRTAAEIASAAGAHADSLDRLLRHLVAVGLFT 69 (332)
T ss_dssp HHHHHHHHHTHHHHHHT--TCCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHcChHHHHhc--CCCCHHHHHHHHCcCHHHHHHHHHHHHhCCcEE
Confidence 55778888899999976 5899999999999997554 45556677765
No 269
>2wv0_A YVOA, HTH-type transcriptional repressor YVOA; DNA-binding, transcription regulation, transcriptional regulator, GNTR/HUTC family; 2.40A {Bacillus subtilis}
Probab=23.68 E-value=1.9e+02 Score=20.35 Aligned_cols=50 Identities=10% Similarity=0.148 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHHhcCCc-chHHHHHHhCCCH---HHHHHHHHhcCCeec
Q psy9207 41 KALQDEVQKRAISLISKAYSSI-PNTSLSEFLGVTE---QEAAAIAQAEGWTVD 90 (125)
Q Consensus 41 ~~l~~~vR~~~~~li~~AY~sI-~~~~~a~~Lgl~~---~e~~~~~~~~GW~~d 90 (125)
..+.+.+|++|..-.=+.=..| +..++|..+|+|. -++.+...+.|.-.-
T Consensus 13 ~~i~~~l~~~I~~g~~~~g~~lPse~~La~~~~vSr~tvr~Al~~L~~~G~i~~ 66 (243)
T 2wv0_A 13 YQIMEQLKTQIKNGELQPDMPLPSEREYAEQFGISRMTVRQALSNLVNEGLLYR 66 (243)
T ss_dssp HHHHHHHHHHHHHTSSCTTCBCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHHhCCCCCcCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEE
Confidence 4555666666665333344678 7899999999996 455666677899873
No 270
>3omt_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 1.65A {Cytophaga hutchinsonii}
Probab=23.61 E-value=74 Score=17.46 Aligned_cols=23 Identities=17% Similarity=0.118 Sum_probs=17.9
Q ss_pred CcchHHHHHHhCCCHHHHHHHHH
Q psy9207 61 SIPNTSLSEFLGVTEQEAAAIAQ 83 (125)
Q Consensus 61 sI~~~~~a~~Lgl~~~e~~~~~~ 83 (125)
.++..++|..+|++..-+-.+..
T Consensus 21 glsq~~lA~~~gis~~~is~~e~ 43 (73)
T 3omt_A 21 GKTNLWLTETLDKNKTTVSKWCT 43 (73)
T ss_dssp TCCHHHHHHHTTCCHHHHHHHHT
T ss_pred CCCHHHHHHHHCcCHHHHHHHHc
Confidence 57888899999998777766654
No 271
>3bwg_A Uncharacterized HTH-type transcriptional regulato; APC85486, YYDK, transcriptional regulator, structural genomi 2; 2.09A {Bacillus subtilis subsp} SCOP: a.4.5.6 d.190.1.2
Probab=23.48 E-value=1.5e+02 Score=20.75 Aligned_cols=50 Identities=8% Similarity=0.101 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHHHhcCCc-chHHHHHHhCCCH---HHHHHHHHhcCCeec
Q psy9207 41 KALQDEVQKRAISLISKAYSSI-PNTSLSEFLGVTE---QEAAAIAQAEGWTVD 90 (125)
Q Consensus 41 ~~l~~~vR~~~~~li~~AY~sI-~~~~~a~~Lgl~~---~e~~~~~~~~GW~~d 90 (125)
..+.+.++++|..-.=+.=..| +..++|..+|+|. -++.+...+.|.-.-
T Consensus 8 ~~i~~~l~~~I~~g~~~~g~~lPse~~La~~~~vSr~tvr~Al~~L~~~g~i~~ 61 (239)
T 3bwg_A 8 QQIATEIETYIEEHQLQQGDKLPVLETLMAQFEVSKSTITKSLELLEQKGAIFQ 61 (239)
T ss_dssp CHHHHHHHHHHHHTTCCTTCBCCCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHHhCCCCCCCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCcEEE
Confidence 4556667777665433444678 7899999999996 455555667899873
No 272
>2eh3_A Transcriptional regulator; all alpha proteins, tetracyclin repressor-like, C-terminal D homeodomain-like, DNA/RNA-binding 3-helical bundle; 1.55A {Aquifex aeolicus}
Probab=23.37 E-value=90 Score=19.92 Aligned_cols=22 Identities=9% Similarity=0.252 Sum_probs=19.5
Q ss_pred HHHHhcCCcchHHHHHHhCCCH
Q psy9207 54 LISKAYSSIPNTSLSEFLGVTE 75 (125)
Q Consensus 54 li~~AY~sI~~~~~a~~Lgl~~ 75 (125)
..++-|...+++++|+-.|++.
T Consensus 15 f~~~Gy~~~s~~~Ia~~agvsk 36 (179)
T 2eh3_A 15 FFEKGYQGTSVEEIVKRANLSK 36 (179)
T ss_dssp HHHHCSTTCCHHHHHHHHTCCH
T ss_pred HHHcCCccCCHHHHHHHhCCCc
Confidence 3567899999999999999985
No 273
>2jj7_A Hemolysin II regulatory protein; DNA-binding protein, transcription regulation, DNA-binding, family, transcription, transcriptional regulator; 2.10A {Bacillus cereus} PDB: 2wv1_A 2jk3_A 2fx0_A
Probab=23.28 E-value=94 Score=19.80 Aligned_cols=33 Identities=6% Similarity=-0.038 Sum_probs=25.2
Q ss_pred HHHHhcCCcchHHHHHHhCCCH----------HHHHHHHHhcC
Q psy9207 54 LISKAYSSIPNTSLSEFLGVTE----------QEAAAIAQAEG 86 (125)
Q Consensus 54 li~~AY~sI~~~~~a~~Lgl~~----------~e~~~~~~~~G 86 (125)
..++-|..++++++|+-.|++. +++...+....
T Consensus 20 ~~~~G~~~~t~~~IA~~agvs~~tlY~~F~sK~~L~~~~~~~~ 62 (186)
T 2jj7_A 20 FGERGYEGTSIQEIAKEAKVNVAMASYYFNGKENLYYEVFKKY 62 (186)
T ss_dssp HHHHHHHHCCHHHHHHHHTSCHHHHHHHHSSHHHHHHHHHHHH
T ss_pred HHHcCCccCCHHHHHHHhCCChhhhhhhcCCHHHHHHHHHHHH
Confidence 3457899999999999999985 66665555443
No 274
>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*
Probab=23.28 E-value=1.8e+02 Score=21.34 Aligned_cols=47 Identities=13% Similarity=0.017 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHHHhcCCcchHHHHHHhCCCHHH---HHHHHHhcCCee
Q psy9207 41 KALQDEVQKRAISLISKAYSSIPNTSLSEFLGVTEQE---AAAIAQAEGWTV 89 (125)
Q Consensus 41 ~~l~~~vR~~~~~li~~AY~sI~~~~~a~~Lgl~~~e---~~~~~~~~GW~~ 89 (125)
..|...+|-.+++.+.. ..++++++|.-+|+++.- +.......|.-.
T Consensus 31 ~~l~~~~~l~i~~~l~~--~~~t~~eLA~~~g~~~~~l~r~Lr~L~~~Gll~ 80 (374)
T 1qzz_A 31 MALRVAATLRLVDHLLA--GADTLAGLADRTDTHPQALSRLVRHLTVVGVLE 80 (374)
T ss_dssp HHHHHHHHTTHHHHHHT--TCCSHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHcChHHHHhC--CCCCHHHHHHHhCcCHHHHHHHHHHHhhCCCEE
Confidence 66788899999999953 579999999999999744 455566678765
No 275
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=23.20 E-value=1.4e+02 Score=18.30 Aligned_cols=40 Identities=10% Similarity=0.118 Sum_probs=28.3
Q ss_pred HHHHHHHHhcC-CcchHHHHHHhCCCHHHH---HHHHHhcCCee
Q psy9207 50 RAISLISKAYS-SIPNTSLSEFLGVTEQEA---AAIAQAEGWTV 89 (125)
Q Consensus 50 ~~~~li~~AY~-sI~~~~~a~~Lgl~~~e~---~~~~~~~GW~~ 89 (125)
.++..+...=. .++..++|..+|++..-+ ++-..++||..
T Consensus 38 ~iL~~l~~~~~~~~~~~ela~~l~~~~~tvs~~l~~Le~~Gli~ 81 (141)
T 3bro_A 38 TIIDYLSRNKNKEVLQRDLESEFSIKSSTATVLLQRMEIKKLLY 81 (141)
T ss_dssp HHHHHHHHTTTSCCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHCCCCCcCHHHHHHHHCCCcchHHHHHHHHHHCCCEE
Confidence 45555554322 799999999999997554 44455689986
No 276
>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28
Probab=23.19 E-value=1.4e+02 Score=18.28 Aligned_cols=38 Identities=18% Similarity=0.247 Sum_probs=26.7
Q ss_pred HHHHHHHhcCCcchHHHHHHhCCCHHHHHH---HHHhcCCee
Q psy9207 51 AISLISKAYSSIPNTSLSEFLGVTEQEAAA---IAQAEGWTV 89 (125)
Q Consensus 51 ~~~li~~AY~sI~~~~~a~~Lgl~~~e~~~---~~~~~GW~~ 89 (125)
++..+.. ...++..++|..+|++..-+.. -..+.||..
T Consensus 39 iL~~l~~-~~~~~~~~la~~l~~~~~tvs~~l~~L~~~gli~ 79 (138)
T 1jgs_A 39 VLCSIRC-AACITPVELKKVLSVDLGALTRMLDRLVCKGWVE 79 (138)
T ss_dssp HHHHHHH-HSSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHh-cCCCCHHHHHHHHCCChHHHHHHHHHHHHCCCEE
Confidence 4444433 4678999999999999755444 455679876
No 277
>4b8x_A SCO5413, possible MARR-transcriptional regulator; winged helix motif; HET: CME; 1.25A {Streptomyces coelicolor}
Probab=23.18 E-value=1.1e+02 Score=19.41 Aligned_cols=39 Identities=18% Similarity=0.225 Sum_probs=27.3
Q ss_pred HHHHHHHh-cCCcchHHHHHHhCCCHHHH---HHHHHhcCCee
Q psy9207 51 AISLISKA-YSSIPNTSLSEFLGVTEQEA---AAIAQAEGWTV 89 (125)
Q Consensus 51 ~~~li~~A-Y~sI~~~~~a~~Lgl~~~e~---~~~~~~~GW~~ 89 (125)
++.++..+ -..++..++|..+|++..-+ ++-..++||..
T Consensus 40 vL~~L~~~~~~~~t~~eLa~~l~~~~~tvs~~v~~Le~~Glv~ 82 (147)
T 4b8x_A 40 ALVLLTFSKSGELPMSKIGERLMVHPTSVTNTVDRLVRSGLVA 82 (147)
T ss_dssp HHHHHHTSGGGEEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHCCCCCcCHHHHHHHHCCCHHHHHHHHHHHHhCCCEE
Confidence 44444433 34699999999999997554 44556689986
No 278
>2dak_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5, USP 5, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.14 E-value=92 Score=17.46 Aligned_cols=25 Identities=16% Similarity=0.340 Sum_probs=17.5
Q ss_pred HHHHHHhCCCHHHHHHHHHhcCCeec
Q psy9207 65 TSLSEFLGVTEQEAAAIAQAEGWTVD 90 (125)
Q Consensus 65 ~~~a~~Lgl~~~e~~~~~~~~GW~~d 90 (125)
..+.. +||+.+++.......||.++
T Consensus 14 ~~L~~-MGF~~~~a~~AL~~t~~nve 38 (63)
T 2dak_A 14 TTIVS-MGFSRDQALKALRATNNSLE 38 (63)
T ss_dssp HHHHH-HTCCHHHHHHHHHHTTSCSH
T ss_pred HHHHH-cCCCHHHHHHHHHHcCCCHH
Confidence 34444 38888888887777788765
No 279
>3crj_A Transcription regulator; APC88200, TETR, structura genomics, PSI-2, protein structure initiative; HET: MSE; 2.60A {Haloarcula marismortui atcc 43049}
Probab=23.09 E-value=1.3e+02 Score=19.72 Aligned_cols=22 Identities=14% Similarity=0.323 Sum_probs=19.3
Q ss_pred HHHHhcCCcchHHHHHHhCCCH
Q psy9207 54 LISKAYSSIPNTSLSEFLGVTE 75 (125)
Q Consensus 54 li~~AY~sI~~~~~a~~Lgl~~ 75 (125)
...+-|..++++++|+-.|++.
T Consensus 27 f~~~G~~~~s~~~IA~~agvsk 48 (199)
T 3crj_A 27 LREHGYADLTIQRIADEYGKST 48 (199)
T ss_dssp HHHHTTTTCCHHHHHHHHTSCH
T ss_pred HHHcCcccCCHHHHHHHhCCCh
Confidence 4467899999999999999985
No 280
>2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain, endocytosis/signaling protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=23.09 E-value=46 Score=17.12 Aligned_cols=25 Identities=32% Similarity=0.575 Sum_probs=16.9
Q ss_pred HHHHHHhCCCHHHHHHHHHhcCCeec
Q psy9207 65 TSLSEFLGVTEQEAAAIAQAEGWTVD 90 (125)
Q Consensus 65 ~~~a~~Lgl~~~e~~~~~~~~GW~~d 90 (125)
..+.. +||+.+++.......||.++
T Consensus 9 ~~L~~-MGF~~~~a~~AL~~~~~n~e 33 (43)
T 2g3q_A 9 EELSG-MGFTEEEAHNALEKCNWDLE 33 (43)
T ss_dssp HHHHT-TTSCHHHHHHHHHHHTSCHH
T ss_pred HHHHH-cCCCHHHHHHHHHHhCcCHH
Confidence 34444 48888888777777777664
No 281
>1x9y_A Cysteine proteinase; half-barrel, barrel-sandwich-hybrid, hydrolase; 2.50A {Staphylococcus aureus} SCOP: d.3.1.1 d.17.1.4
Probab=23.06 E-value=68 Score=24.99 Aligned_cols=41 Identities=10% Similarity=0.256 Sum_probs=36.4
Q ss_pred HHHHHHHHHhcCCcchHHHHHHhCCCHHHHHHHHHhcCCeec
Q psy9207 49 KRAISLISKAYSSIPNTSLSEFLGVTEQEAAAIAQAEGWTVD 90 (125)
Q Consensus 49 ~~~~~li~~AY~sI~~~~~a~~Lgl~~~e~~~~~~~~GW~~d 90 (125)
-..=+.+...|.+++.+++.. -|++..|+++++++.|=.++
T Consensus 227 ~nA~~iMr~~yPN~S~~~l~~-ts~~~~q~Iky~qsyG~~~~ 267 (367)
T 1x9y_A 227 YNAHDIMRTLYPEVSEQDLPN-CATFPNQMIEYGKSQGRDIH 267 (367)
T ss_dssp CCHHHHHHHHCTTSCTTTGGG-CCCCHHHHHHHHHHTTEEEE
T ss_pred CCHHHHHHHHCCCCChhHHhh-cCCCHHHHHHHHHHhCcchh
Confidence 345568889999999999998 99999999999999998886
No 282
>2p5k_A Arginine repressor; DNA-binding domain, winged helix-turn-helix (WHTH), DNA binding protein; 1.00A {Bacillus subtilis} SCOP: a.4.5.3 PDB: 2p5l_C*
Probab=23.05 E-value=96 Score=16.53 Aligned_cols=42 Identities=14% Similarity=0.063 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHhcCCcchHHHHHHh-----CCCHHHHHHHHHhcCCe
Q psy9207 47 VQKRAISLISKAYSSIPNTSLSEFL-----GVTEQEAAAIAQAEGWT 88 (125)
Q Consensus 47 vR~~~~~li~~AY~sI~~~~~a~~L-----gl~~~e~~~~~~~~GW~ 88 (125)
-|..++..+-..-..++.++++..| ++|..-+-....+.|..
T Consensus 5 ~R~~~i~~ll~~~~~~t~~el~~~l~~~~~~vs~~Tv~R~L~~lg~v 51 (64)
T 2p5k_A 5 QRHIKIREIITSNEIETQDELVDMLKQDGYKVTQATVSRDIKELHLV 51 (64)
T ss_dssp HHHHHHHHHHHHSCCCSHHHHHHHHHHTTCCCCHHHHHHHHHHHTCE
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCcCHHHHHHHHHHcCCE
Confidence 4555444444556789999999999 99976666666566643
No 283
>1vmg_A Hypothetical protein SSO3215; 13816655, MAZG nucleotide pyrophosphohydrolase, structural G JCSG, protein structure initiative, PSI; HET: MSE; 1.46A {Sulfolobus solfataricus} SCOP: a.204.1.2
Probab=23.02 E-value=1.4e+02 Score=18.37 Aligned_cols=32 Identities=22% Similarity=0.302 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHhcCCcchHHHHHHhCCCHHHHHHH
Q psy9207 44 QDEVQKRAISLISKAYSSIPNTSLSEFLGVTEQEAAAI 81 (125)
Q Consensus 44 ~~~vR~~~~~li~~AY~sI~~~~~a~~Lgl~~~e~~~~ 81 (125)
.+.+.+++++++- .+-.+|..+|++.+++...
T Consensus 60 ~~~i~eELgDvLf------~lv~lA~~lgiD~e~al~~ 91 (95)
T 1vmg_A 60 LDSIQEELADVIA------WTVSIANLEGIDIEEALKK 91 (95)
T ss_dssp HHHHHHHHHHHHH------HHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHHHHHH------HHHHHHHHHCcCHHHHHHH
Confidence 3457777787775 6778999999998887653
No 284
>1whz_A Hypothetical protein; alpha and beta protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.52A {Thermus thermophilus} SCOP: d.50.3.2
Probab=23.01 E-value=66 Score=18.24 Aligned_cols=18 Identities=17% Similarity=0.141 Sum_probs=15.8
Q ss_pred CCHHHHHHHHHhcCCeec
Q psy9207 73 VTEQEAAAIAQAEGWTVD 90 (125)
Q Consensus 73 l~~~e~~~~~~~~GW~~d 90 (125)
++..|+++...+.||.+.
T Consensus 5 ~~~~elik~L~~~G~~~~ 22 (70)
T 1whz_A 5 PRPEEVARKLRRLGFVER 22 (70)
T ss_dssp CCHHHHHHHHHHTTCEEE
T ss_pred CCHHHHHHHHHHCCCEEe
Confidence 567999999999999974
No 285
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}
Probab=22.98 E-value=1.4e+02 Score=18.55 Aligned_cols=44 Identities=9% Similarity=0.031 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHhcCC-cchHHHHHHhCCCHHHH---HHHHHhcCCee
Q psy9207 46 EVQKRAISLISKAYSS-IPNTSLSEFLGVTEQEA---AAIAQAEGWTV 89 (125)
Q Consensus 46 ~vR~~~~~li~~AY~s-I~~~~~a~~Lgl~~~e~---~~~~~~~GW~~ 89 (125)
..+.+++.++...=.. ++..++|..||++..-+ ++...+.|+..
T Consensus 26 ~~e~~il~~L~~~~~~~~t~~eLa~~l~~s~sTV~r~L~~L~~~GlV~ 73 (123)
T 3r0a_A 26 KADLNVMKSFLNEPDRWIDTDALSKSLKLDVSTVQRSVKKLHEKEILQ 73 (123)
T ss_dssp HHHHHHHHHHHHSTTCCEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHHHCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEE
Confidence 4567888888876655 99999999999997554 44556689975
No 286
>1q06_A Transcriptional regulator CUER; MERR family transcriptional regulator, copper efflux regulator; 2.07A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q05_A 1q07_A
Probab=22.96 E-value=1.5e+02 Score=19.01 Aligned_cols=48 Identities=19% Similarity=0.200 Sum_probs=28.7
Q ss_pred chHHHHHHhCCCHHHHHHHHHhcCCeecCceeeccCCCCCCCCCCC-ChHHHHHHhhH
Q psy9207 63 PNTSLSEFLGVTEQEAAAIAQAEGWTVDKVYTQPVKKPEEYATPNI-TDDQLYILTQY 119 (125)
Q Consensus 63 ~~~~~a~~Lgl~~~e~~~~~~~~GW~~d~~~~~p~~~~~~~~~~~~-~~~ql~~Lt~~ 119 (125)
++.++|+++|++..-+.-|-. .+.+.|..... ..-.. +.+++..|..+
T Consensus 2 ~I~e~A~~~gvs~~tLR~ye~-------~Gll~p~~r~~--~g~R~Y~~~dl~~l~~I 50 (135)
T 1q06_A 2 NISDVAKITGLTSKAIRFYEE-------KGLVTPPMRSE--NGYRTYTQQHLNELTLL 50 (135)
T ss_dssp CHHHHHHHHTCCHHHHHHHHH-------TTCSCCCEECT--TSCEECCHHHHHHHHHH
T ss_pred CHHHHHHHHCcCHHHHHHHHH-------CCCCCCCccCC--CCCeeeCHHHHHHHHHH
Confidence 678999999999888877644 23444431111 11122 77777766543
No 287
>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A*
Probab=22.89 E-value=2.1e+02 Score=21.13 Aligned_cols=48 Identities=8% Similarity=0.056 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHHHhcCCcchHHHHHHhCCCHH---HHHHHHHhcCCe
Q psy9207 41 KALQDEVQKRAISLISKAYSSIPNTSLSEFLGVTEQ---EAAAIAQAEGWT 88 (125)
Q Consensus 41 ~~l~~~vR~~~~~li~~AY~sI~~~~~a~~Lgl~~~---e~~~~~~~~GW~ 88 (125)
..|...++-.+++.+..+=..++.+++|+-+|+++. .+..++...|.-
T Consensus 23 ~~L~aa~eLglfd~L~~~~~p~t~~eLA~~~g~~~~~l~rlLr~L~~~gll 73 (353)
T 4a6d_A 23 QVLFAACELGVFDLLAEAPGPLDVAAVAAGVRASAHGTELLLDICVSLKLL 73 (353)
T ss_dssp HHHHHHHHHTHHHHHHHSSSCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHHcCHHHHHhcCCCCCCHHHHHHhhCcCHHHHHHHHHHHHHCCCE
Confidence 456778888999999987778999999999999974 455666677764
No 288
>3knw_A Putative transcriptional regulator (TETR/ACRR FAM; TETR-like protein, MCSG, PSI, structural genomics, protein S initiative; 2.45A {Acinetobacter SP}
Probab=22.80 E-value=1.1e+02 Score=19.86 Aligned_cols=22 Identities=14% Similarity=0.308 Sum_probs=19.4
Q ss_pred HHHHhcCCcchHHHHHHhCCCH
Q psy9207 54 LISKAYSSIPNTSLSEFLGVTE 75 (125)
Q Consensus 54 li~~AY~sI~~~~~a~~Lgl~~ 75 (125)
..++-|..++++++|+-.|++.
T Consensus 27 ~~~~G~~~~ti~~IA~~agvs~ 48 (212)
T 3knw_A 27 VLRKGFVGVGLQEILKTSGVPK 48 (212)
T ss_dssp HHHHCSTTCCHHHHHHHHTCCH
T ss_pred HHHcCCccCCHHHHHHHhCCCh
Confidence 3468999999999999999985
No 289
>3edp_A LIN2111 protein; APC88337, listeria innocua CLIP11262, structural GE PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 2.09A {Listeria innocua}
Probab=22.76 E-value=1.3e+02 Score=21.22 Aligned_cols=50 Identities=16% Similarity=0.185 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHHhcCCc-chHHHHHHhCCCH---HHHHHHHHhcCCeec
Q psy9207 41 KALQDEVQKRAISLISKAYSSI-PNTSLSEFLGVTE---QEAAAIAQAEGWTVD 90 (125)
Q Consensus 41 ~~l~~~vR~~~~~li~~AY~sI-~~~~~a~~Lgl~~---~e~~~~~~~~GW~~d 90 (125)
.++.+.+|++|..-.=+.=..| +..++|..+|+|. -++.+...+.|+-.-
T Consensus 12 ~~i~~~l~~~I~~g~~~~g~~lPse~~La~~~~vSr~tvr~Al~~L~~~G~i~~ 65 (236)
T 3edp_A 12 EVIASKIKDSINRDEYKTGMLMPNETALQEIYSSSRTTIRRAVDLLVEEGLVVR 65 (236)
T ss_dssp HHHHHHHHHHHHTTSSCCCC--CCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHHhCCCCCcCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEE
Confidence 4555666666654333445788 7899999999996 555666677899763
No 290
>3boe_A Cadmium-specific carbonic anhydrase; marine diatom, cadmium-bound, acetate LI lyase; 1.40A {Thalassiosira weissflogii} SCOP: c.154.1.1 PDB: 3boc_A 3bob_A 3boj_A 3boh_A
Probab=22.75 E-value=50 Score=23.29 Aligned_cols=17 Identities=24% Similarity=0.583 Sum_probs=15.1
Q ss_pred CCHHHHHHHHHhcCCee
Q psy9207 73 VTEQEAAAIAQAEGWTV 89 (125)
Q Consensus 73 l~~~e~~~~~~~~GW~~ 89 (125)
|+++++....+.|||+-
T Consensus 2 ~tp~di~~aLq~RGW~A 18 (210)
T 3boe_A 2 ISPAQIAEALQGRGWDA 18 (210)
T ss_dssp CCHHHHHHHHHTTTCEE
T ss_pred CCHHHHHHHHHcCCCce
Confidence 67889999999999996
No 291
>2r1j_L Repressor protein C2; protein-DNA complex, helix-turn-helix, DNA-binding, transcription, transcription regulation; 1.53A {Enterobacteria phage P22} SCOP: a.35.1.2 PDB: 3jxb_C 3jxc_L 3jxd_L
Probab=22.72 E-value=84 Score=16.61 Aligned_cols=23 Identities=17% Similarity=0.368 Sum_probs=17.5
Q ss_pred CcchHHHHHHhCCCHHHHHHHHH
Q psy9207 61 SIPNTSLSEFLGVTEQEAAAIAQ 83 (125)
Q Consensus 61 sI~~~~~a~~Lgl~~~e~~~~~~ 83 (125)
.++..++|..+|++..-+..+..
T Consensus 18 g~s~~~lA~~~gis~~~i~~~e~ 40 (68)
T 2r1j_L 18 KIRQAALGKMVGVSNVAISQWER 40 (68)
T ss_dssp TCCHHHHHHHHTSCHHHHHHHHT
T ss_pred CCCHHHHHHHHCCCHHHHHHHHc
Confidence 57888899999998776666543
No 292
>3u2r_A Regulatory protein MARR; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, helix-turn-helix; 2.20A {Planctomyces limnophilus}
Probab=22.69 E-value=95 Score=20.03 Aligned_cols=40 Identities=8% Similarity=0.126 Sum_probs=26.7
Q ss_pred HHHHHHHHh-cCCcchHHHHHHhCCCH---HHHHHHHHhcCCee
Q psy9207 50 RAISLISKA-YSSIPNTSLSEFLGVTE---QEAAAIAQAEGWTV 89 (125)
Q Consensus 50 ~~~~li~~A-Y~sI~~~~~a~~Lgl~~---~e~~~~~~~~GW~~ 89 (125)
.++..+... -..++..++|..+|++. ..+++-..++||..
T Consensus 50 ~vL~~l~~~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~ 93 (168)
T 3u2r_A 50 NTLRLLRSVHPEGMATLQIADRLISRAPDITRLIDRLDDRGLVL 93 (168)
T ss_dssp HHHHHHHHHTTSCEEHHHHHHHC---CTHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHhcCCCCcCHHHHHHHHCCChhhHHHHHHHHHHCCCEe
Confidence 455555554 36899999999999985 45555566789987
No 293
>1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} SCOP: a.4.5.24 a.76.1.1 PDB: 2ev0_A 1on1_A 2ev5_A 2ev6_A* 2f5c_A 2f5d_A 2f5e_A 2f5f_A 2hyf_A* 2hyg_D 3r60_A* 3r61_A*
Probab=22.67 E-value=1.5e+02 Score=18.52 Aligned_cols=31 Identities=10% Similarity=0.125 Sum_probs=23.8
Q ss_pred cCCcchHHHHHHhCCCHHH---HHHHHHhcCCee
Q psy9207 59 YSSIPNTSLSEFLGVTEQE---AAAIAQAEGWTV 89 (125)
Q Consensus 59 Y~sI~~~~~a~~Lgl~~~e---~~~~~~~~GW~~ 89 (125)
...+++.++|..||++..- +++-..+.||..
T Consensus 20 ~~~~~~~ela~~l~vs~~tvs~~l~~Le~~Glv~ 53 (142)
T 1on2_A 20 KGYARVSDIAEALAVHPSSVTKMVQKLDKDEYLI 53 (142)
T ss_dssp HSSCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEE
T ss_pred cCCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEE
Confidence 4679999999999999754 444455679986
No 294
>3bru_A Regulatory protein, TETR family; structural genomics, APC88928, PSI-2, protein structur initiative; 2.30A {Rhodobacter sphaeroides 2}
Probab=22.59 E-value=1.4e+02 Score=19.53 Aligned_cols=21 Identities=24% Similarity=0.273 Sum_probs=18.6
Q ss_pred HHHhcCCcchHHHHHHhCCCH
Q psy9207 55 ISKAYSSIPNTSLSEFLGVTE 75 (125)
Q Consensus 55 i~~AY~sI~~~~~a~~Lgl~~ 75 (125)
.++-|..++++++|+-.|++.
T Consensus 44 ~~~G~~~~t~~~IA~~aGvs~ 64 (222)
T 3bru_A 44 TEKGYSSVGVDEILKAARVPK 64 (222)
T ss_dssp HHSCTTTCCHHHHHHHHTCCH
T ss_pred HHcCCCcCcHHHHHHHhCCCc
Confidence 356899999999999999985
No 295
>1wi9_A Protein C20ORF116 homolog; helix-turn-helix motif, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.4.5.47
Probab=22.58 E-value=91 Score=18.54 Aligned_cols=41 Identities=20% Similarity=0.172 Sum_probs=30.5
Q ss_pred cCCcchHHHHHHhCCCHHHHHHHHHh---cCCe---ec--CceeeccCC
Q psy9207 59 YSSIPNTSLSEFLGVTEQEAAAIAQA---EGWT---VD--KVYTQPVKK 99 (125)
Q Consensus 59 Y~sI~~~~~a~~Lgl~~~e~~~~~~~---~GW~---~d--~~~~~p~~~ 99 (125)
-.-++++++|.-+|++.+++++-+++ .|-- +| |++++-.+.
T Consensus 19 ~Kvv~LedLA~~F~l~t~~~i~RI~~Le~~g~ltGViDDRGKfIyIs~e 67 (72)
T 1wi9_A 19 SKVVLLEDLAFQMGLRTQDAINRIQDLLTEGTLTGVIDDRGKFIYITPS 67 (72)
T ss_dssp CSEECHHHHHHHHCSCHHHHHHHHHHHHHHSSSCEEECTTCCEEECCCS
T ss_pred cCeeeHHHHHHHhCCChHHHHHHHHHHHHCCCeEEEEeCCCCEEEecHH
Confidence 36689999999999999998877665 4554 34 777776544
No 296
>3nxc_A HTH-type protein SLMA; nucleoid occlusion, cell division, TETR family member, DNA B protein; 2.50A {Escherichia coli}
Probab=22.55 E-value=93 Score=20.16 Aligned_cols=31 Identities=23% Similarity=0.393 Sum_probs=19.0
Q ss_pred HHHHHHHHHHH--HHhcCCcchHHHHHHhCCCH
Q psy9207 45 DEVQKRAISLI--SKAYSSIPNTSLSEFLGVTE 75 (125)
Q Consensus 45 ~~vR~~~~~li--~~AY~sI~~~~~a~~Lgl~~ 75 (125)
+.+-+..++++ ++-|..++++++|+-.|++.
T Consensus 27 ~~Il~aA~~~lf~~~G~~~~t~~~Ia~~agvs~ 59 (212)
T 3nxc_A 27 EEILQSLALMLESSDGSQRITTAKLAASVGVSE 59 (212)
T ss_dssp HHHHHHHHHHHHC------CCHHHHHHHTTSCH
T ss_pred HHHHHHHHHHHHhcCChhhcCHHHHHHHhCCCh
Confidence 44555556644 45999999999999999985
No 297
>3dcf_A Transcriptional regulator of the TETR/ACRR family; YP_290855.1, structural genomics, joint center for structural genomics, JCSG; 2.50A {Thermobifida fusca YX}
Probab=22.39 E-value=1.5e+02 Score=19.14 Aligned_cols=22 Identities=18% Similarity=0.371 Sum_probs=19.3
Q ss_pred HHHHhcCCcchHHHHHHhCCCH
Q psy9207 54 LISKAYSSIPNTSLSEFLGVTE 75 (125)
Q Consensus 54 li~~AY~sI~~~~~a~~Lgl~~ 75 (125)
+.++-|..++++++|+-.|++.
T Consensus 44 ~~~~G~~~~tv~~Ia~~agvs~ 65 (218)
T 3dcf_A 44 FREKGYYATSLDDIADRIGFTK 65 (218)
T ss_dssp HHHTCTTTCCHHHHHHHHTCCH
T ss_pred HHHcCcccCcHHHHHHHhCCCH
Confidence 4567899999999999999985
No 298
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=22.37 E-value=1.6e+02 Score=18.94 Aligned_cols=38 Identities=16% Similarity=0.170 Sum_probs=29.5
Q ss_pred hHHHHHHHHHHHHHcCCchHHHHHhccCCcHHHHHHHH
Q psy9207 4 PEIGQVWEVGKHLWNGNYPSIYSTLKRTWSDDIAHIMK 41 (125)
Q Consensus 4 ~~l~~~~~l~~~l~~~~y~~v~~~~~~~~s~~~~~~i~ 41 (125)
.|...+..+.-.+-+|+|...+.......++++.|..+
T Consensus 39 ~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~A 76 (116)
T 2p58_C 39 EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLA 76 (116)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHH
T ss_pred HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHH
Confidence 56777888888899999999999999854566655543
No 299
>1rkt_A Protein YFIR; transcription regulator, structural genomics, PSI, protein S initiative, midwest center for structural genomics, MCSG; 1.95A {Bacillus subtilis} SCOP: a.4.1.9 a.121.1.1
Probab=22.37 E-value=1.2e+02 Score=19.88 Aligned_cols=22 Identities=14% Similarity=0.176 Sum_probs=19.2
Q ss_pred HHHHhcCCcchHHHHHHhCCCH
Q psy9207 54 LISKAYSSIPNTSLSEFLGVTE 75 (125)
Q Consensus 54 li~~AY~sI~~~~~a~~Lgl~~ 75 (125)
..++-|...+++++|+-.|++.
T Consensus 25 f~~~Gy~~ts~~~IA~~agvs~ 46 (205)
T 1rkt_A 25 FKRKGFELTTMKDVVEESGFSR 46 (205)
T ss_dssp HHHHCSTTCCHHHHHHHHTSCH
T ss_pred HHHcCcccCCHHHHHHHHCCCc
Confidence 3457899999999999999985
No 300
>3pas_A TETR family transcription regulator; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.90A {Marinobacter aquaeolei}
Probab=22.21 E-value=81 Score=20.05 Aligned_cols=22 Identities=9% Similarity=0.283 Sum_probs=19.2
Q ss_pred HHHHhcCCcchHHHHHHhCCCH
Q psy9207 54 LISKAYSSIPNTSLSEFLGVTE 75 (125)
Q Consensus 54 li~~AY~sI~~~~~a~~Lgl~~ 75 (125)
..++-|..++++++|+-.|++.
T Consensus 21 ~~~~G~~~~t~~~Ia~~agvs~ 42 (195)
T 3pas_A 21 VADHGFSATSVGKIAKAAGLSP 42 (195)
T ss_dssp HHHHHHHHCCHHHHHHHHTSCH
T ss_pred HHHcChHhcCHHHHHHHhCCCc
Confidence 4467899999999999999985
No 301
>2ibd_A Possible transcriptional regulator; probable transcriptional regulatory protein, rhodococcus SP. structural genomics, PSI-2; 1.50A {Rhodococcus SP}
Probab=22.19 E-value=1.2e+02 Score=19.83 Aligned_cols=21 Identities=5% Similarity=0.205 Sum_probs=18.7
Q ss_pred HHHhcCCcchHHHHHHhCCCH
Q psy9207 55 ISKAYSSIPNTSLSEFLGVTE 75 (125)
Q Consensus 55 i~~AY~sI~~~~~a~~Lgl~~ 75 (125)
.++-|..++++++|+-.|++.
T Consensus 28 ~~~G~~~~s~~~IA~~agvs~ 48 (204)
T 2ibd_A 28 AERGLRATTVRDIADAAGILS 48 (204)
T ss_dssp HHHCSTTCCHHHHHHHTTSCH
T ss_pred HHcCchhcCHHHHHHHhCCCc
Confidence 457899999999999999985
No 302
>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*
Probab=22.07 E-value=1.6e+02 Score=21.50 Aligned_cols=47 Identities=11% Similarity=0.013 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHHHhcCCcchHHHHHHhCCCHHH---HHHHHHhcCCee
Q psy9207 41 KALQDEVQKRAISLISKAYSSIPNTSLSEFLGVTEQE---AAAIAQAEGWTV 89 (125)
Q Consensus 41 ~~l~~~vR~~~~~li~~AY~sI~~~~~a~~Lgl~~~e---~~~~~~~~GW~~ 89 (125)
..|...+|-.+++.+.. ..++++++|..+|+++.- +.......|.-.
T Consensus 34 ~~l~~~~~l~i~~~l~~--~~~t~~ela~~~~~~~~~l~r~L~~L~~~g~~~ 83 (360)
T 1tw3_A 34 MVVRTAATLRLVDHILA--GARTVKALAARTDTRPEALLRLIRHLVAIGLLE 83 (360)
T ss_dssp HHHHHHHHTTHHHHHHT--TCCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHhCHHHHHhC--CCCCHHHHHHHhCcCHHHHHHHHHHHHHCCCEE
Confidence 67888999999999953 679999999999999744 455566678765
No 303
>3rd3_A Probable transcriptional regulator; 2.40A {Pseudomonas aeruginosa}
Probab=22.03 E-value=99 Score=19.70 Aligned_cols=22 Identities=18% Similarity=0.324 Sum_probs=19.3
Q ss_pred HHHHhcCCcchHHHHHHhCCCH
Q psy9207 54 LISKAYSSIPNTSLSEFLGVTE 75 (125)
Q Consensus 54 li~~AY~sI~~~~~a~~Lgl~~ 75 (125)
..++-|..++++++|+-.|++.
T Consensus 23 f~~~G~~~~t~~~IA~~agvs~ 44 (197)
T 3rd3_A 23 MAVKGFSGVGLNEILQSAGVPK 44 (197)
T ss_dssp HHHHCSTTCCHHHHHHHHTCCH
T ss_pred HHHCCcccCCHHHHHHHhCCCh
Confidence 3467999999999999999985
No 304
>2qib_A TETR-family transcriptional regulator; HTH DNA binding, STRU genomics, MCSG, PSI-2, protein structure initiative; HET: P6G; 1.70A {Streptomyces coelicolor A3}
Probab=21.94 E-value=1.6e+02 Score=19.67 Aligned_cols=21 Identities=5% Similarity=0.200 Sum_probs=18.7
Q ss_pred HHHhcCCcchHHHHHHhCCCH
Q psy9207 55 ISKAYSSIPNTSLSEFLGVTE 75 (125)
Q Consensus 55 i~~AY~sI~~~~~a~~Lgl~~ 75 (125)
.++-|..++++++|+-.|++.
T Consensus 27 ~~~G~~~~tv~~IA~~agvs~ 47 (231)
T 2qib_A 27 SRRSPDEVSIDEIASAAGISR 47 (231)
T ss_dssp HHSCGGGCCHHHHHHHHTSCH
T ss_pred HHcCchhcCHHHHHHHhCCCH
Confidence 357899999999999999985
No 305
>3e7q_A Transcriptional regulator; structural genomics, PSI, MCSG, P structure initiative, midwest center for structural genomic binding; 2.20A {Pseudomonas aeruginosa}
Probab=21.92 E-value=83 Score=20.37 Aligned_cols=21 Identities=10% Similarity=0.148 Sum_probs=18.8
Q ss_pred HHHhcCCcchHHHHHHhCCCH
Q psy9207 55 ISKAYSSIPNTSLSEFLGVTE 75 (125)
Q Consensus 55 i~~AY~sI~~~~~a~~Lgl~~ 75 (125)
.++-|..++++++|+-.|++.
T Consensus 28 ~~~G~~~~t~~~Ia~~agvs~ 48 (215)
T 3e7q_A 28 KRHGFQGASVRKICAEAGVSV 48 (215)
T ss_dssp HHHHHHHCCHHHHHHHHTCCH
T ss_pred HHcCcccCCHHHHHHHhCCCH
Confidence 457899999999999999985
No 306
>1x2m_A LAG1 longevity assurance homolog 6; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.4.1.1
Probab=21.79 E-value=80 Score=18.07 Aligned_cols=22 Identities=14% Similarity=-0.006 Sum_probs=18.5
Q ss_pred hHHHHHHhCCCHHHHHHHHHhc
Q psy9207 64 NTSLSEFLGVTEQEAAAIAQAE 85 (125)
Q Consensus 64 ~~~~a~~Lgl~~~e~~~~~~~~ 85 (125)
...+|.-|||++.++.-+.+.+
T Consensus 31 r~~LA~~l~LterQVkvWFqNR 52 (64)
T 1x2m_A 31 LEGLSKQLDWDVRSIQRWFRQR 52 (64)
T ss_dssp HHHHHHHHCSCHHHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHH
Confidence 5679999999999998887654
No 307
>3bjx_A Halocarboxylic acid dehalogenase DEHI; plasmid, hydrolase; 2.30A {Pseudomonas putida}
Probab=21.79 E-value=1.2e+02 Score=23.05 Aligned_cols=78 Identities=18% Similarity=0.078 Sum_probs=44.4
Q ss_pred chHHHHHHHHHHHHHcC-CchHHHHHhccC-------CcHHHHHHH-----HHHHHHHHHHHHHHHHHhcCCcchHHHHH
Q psy9207 3 HPEIGQVWEVGKHLWNG-NYPSIYSTLKRT-------WSDDIAHIM-----KALQDEVQKRAISLISKAYSSIPNTSLSE 69 (125)
Q Consensus 3 ~~~l~~~~~l~~~l~~~-~y~~v~~~~~~~-------~s~~~~~~i-----~~l~~~vR~~~~~li~~AY~sI~~~~~a~ 69 (125)
+|+++++..=-+.+-+. ..+.+|.+|... |++.++++| +.+...++....++....=-.+.+..++.
T Consensus 182 s~~v~aV~~DIr~t~~~~~vns~~RaLA~wP~~L~~~W~~~LKpv~~~g~ld~l~~eii~~Avs~~~g~~y~~~~~~aa~ 261 (311)
T 3bjx_A 182 STEVQGLLKRVADLHYHHGPASDFQALANWPKVLQIVTDEVLAPVARTEQYDAKSRELVTRARELVRGLPGSAGVQRSEL 261 (311)
T ss_dssp CHHHHHHHHHHHHHTTCSSCCHHHHHHTTSHHHHHHHHHTTTTTTTTSHHHHHHHHHHHHHHHHHHHTCSSBCSCCGGGG
T ss_pred CHHHHHHHHHHHHHhCCCCcccHHHHHhcChHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHhCCCCccccCHHHH
Confidence 46777777666655555 456788888752 433444443 33334444444445544444555555677
Q ss_pred HhCCCHHHHHH
Q psy9207 70 FLGVTEQEAAA 80 (125)
Q Consensus 70 ~Lgl~~~e~~~ 80 (125)
.-|+++++..+
T Consensus 262 ~~gmt~~q~ae 272 (311)
T 3bjx_A 262 MSMLTPNELAG 272 (311)
T ss_dssp TTTSCHHHHHH
T ss_pred HcCCCHHHHHH
Confidence 77888755433
No 308
>2fd5_A Transcriptional regulator; DNA-binding protein, structural G PSI, protein structure initiative, midwest center for struc genomics, MCSG; 1.70A {Pseudomonas aeruginosa} SCOP: a.4.1.9 a.121.1.1
Probab=21.77 E-value=1.4e+02 Score=18.88 Aligned_cols=22 Identities=14% Similarity=0.108 Sum_probs=19.2
Q ss_pred HHHHhcCCcchHHHHHHhCCCH
Q psy9207 54 LISKAYSSIPNTSLSEFLGVTE 75 (125)
Q Consensus 54 li~~AY~sI~~~~~a~~Lgl~~ 75 (125)
..++-|..++++++|+-.|++.
T Consensus 20 ~~~~G~~~~s~~~IA~~agvs~ 41 (180)
T 2fd5_A 20 LLERGAVEPSVGEVMGAAGLTV 41 (180)
T ss_dssp HHHHTTTSCCHHHHHHHTTCCG
T ss_pred HHHhCcccCCHHHHHHHhCCCc
Confidence 3468899999999999999974
No 309
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=21.74 E-value=1.3e+02 Score=17.53 Aligned_cols=36 Identities=19% Similarity=0.205 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHhcCCcchHHHHHHhCCCHHHHHHHHHh
Q psy9207 46 EVQKRAISLISKAYSSIPNTSLSEFLGVTEQEAAAIAQA 84 (125)
Q Consensus 46 ~vR~~~~~li~~AY~sI~~~~~a~~Lgl~~~e~~~~~~~ 84 (125)
.++.+++.++. ...++..+|.-+|++..-+-.+...
T Consensus 26 e~k~~~v~~~~---~g~s~~~iA~~~gIs~sTl~rW~k~ 61 (87)
T 2elh_A 26 RDKIHAIQRIH---DGESKASVARDIGVPESTLRGWCKN 61 (87)
T ss_dssp HHHHHHHHHHH---HTCCHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHH---CCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 34455555553 2478999999999998888777653
No 310
>1z05_A Transcriptional regulator, ROK family; structural genomics, protein structure initiative, midwest center for structural genomics; 2.00A {Vibrio cholerae o1 biovar eltor} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=21.72 E-value=2.5e+02 Score=21.40 Aligned_cols=47 Identities=13% Similarity=0.074 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHhcCCcchHHHHHHhCCCHHHHH---HHHHhcCCeec
Q psy9207 43 LQDEVQKRAISLISKAYSSIPNTSLSEFLGVTEQEAA---AIAQAEGWTVD 90 (125)
Q Consensus 43 l~~~vR~~~~~li~~AY~sI~~~~~a~~Lgl~~~e~~---~~~~~~GW~~d 90 (125)
++..=|.+|++++.+ ...+|..++++.+|||..-+. +-..+.|+-..
T Consensus 36 ~r~~n~~~il~~l~~-~~~~sr~ela~~~gls~~tv~~~v~~L~~~gli~~ 85 (429)
T 1z05_A 36 IKQINAGRVYKLIDQ-KGPISRIDLSKESELAPASITKITRELIDAHLIHE 85 (429)
T ss_dssp HHHHHHHHHHHHHHH-HCSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHHHHH-cCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEe
Confidence 455666778888876 478999999999999974443 33444677553
No 311
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=21.62 E-value=1.5e+02 Score=18.30 Aligned_cols=39 Identities=10% Similarity=0.122 Sum_probs=27.2
Q ss_pred HHHHHHHHhcCCcchHHHHHHhCCCHHHH---HHHHHhcCCee
Q psy9207 50 RAISLISKAYSSIPNTSLSEFLGVTEQEA---AAIAQAEGWTV 89 (125)
Q Consensus 50 ~~~~li~~AY~sI~~~~~a~~Lgl~~~e~---~~~~~~~GW~~ 89 (125)
.++..+.. ...++..++|..+|++..-+ ++-..++||..
T Consensus 35 ~iL~~l~~-~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~ 76 (145)
T 3g3z_A 35 AVLYTLAT-EGSRTQKHIGEKWSLPKQTVSGVCKTLAGQGLIE 76 (145)
T ss_dssp HHHHHHHH-HCSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHH-CCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEe
Confidence 34444433 34699999999999997554 44455689986
No 312
>2xrn_A HTH-type transcriptional regulator TTGV; DNA-binding protein, tetramer gene regulator, cooperative DN binding, multidrug binding protein; 2.90A {Pseudomonas putida} PDB: 2xro_A
Probab=21.46 E-value=1.3e+02 Score=21.23 Aligned_cols=40 Identities=5% Similarity=0.123 Sum_probs=29.8
Q ss_pred HHHHHHHHhcCCcchHHHHHHhCCCHHHH---HHHHHhcCCee
Q psy9207 50 RAISLISKAYSSIPNTSLSEFLGVTEQEA---AAIAQAEGWTV 89 (125)
Q Consensus 50 ~~~~li~~AY~sI~~~~~a~~Lgl~~~e~---~~~~~~~GW~~ 89 (125)
+|+.++...=..+++.+++..+|++..-+ .+...+.||-.
T Consensus 10 ~iL~~l~~~~~~~s~~ela~~~gl~~stv~r~l~~L~~~G~v~ 52 (241)
T 2xrn_A 10 SIMRALGSHPHGLSLAAIAQLVGLPRSTVQRIINALEEEFLVE 52 (241)
T ss_dssp HHHHHHHTCTTCEEHHHHHHHTTSCHHHHHHHHHHHHTTTSEE
T ss_pred HHHHHHHhCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEE
Confidence 46666765545799999999999997555 44455689987
No 313
>3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}
Probab=21.44 E-value=1.6e+02 Score=18.56 Aligned_cols=39 Identities=26% Similarity=0.325 Sum_probs=28.3
Q ss_pred HHHHHHHHhcCCcchHHHHHHhCCCHHHH---HHHHHhcCCee
Q psy9207 50 RAISLISKAYSSIPNTSLSEFLGVTEQEA---AAIAQAEGWTV 89 (125)
Q Consensus 50 ~~~~li~~AY~sI~~~~~a~~Lgl~~~e~---~~~~~~~GW~~ 89 (125)
.++.++.. ...++..++|..||++..-+ ++-..++||..
T Consensus 56 ~iL~~l~~-~~~~t~~ela~~l~is~~tvs~~l~~Le~~Gli~ 97 (162)
T 3cjn_A 56 RALAILSA-KDGLPIGTLGIFAVVEQSTLSRALDGLQADGLVR 97 (162)
T ss_dssp HHHHHHHH-SCSEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHH-CCCCCHHHHHHHHCCChhHHHHHHHHHHHCCCEE
Confidence 45555543 46799999999999997554 44455689986
No 314
>1zx4_A P1 PARB, plasmid partition PAR B protein, PARB; translation; HET: CIT; 2.98A {Enterobacteria phage P1} PDB: 2ntz_A
Probab=21.40 E-value=2.1e+02 Score=19.92 Aligned_cols=42 Identities=14% Similarity=0.168 Sum_probs=32.2
Q ss_pred CCcchHHHHHHhCCCHHHHHHHHHhcCCeecCceeeccCCCC
Q psy9207 60 SSIPNTSLSEFLGVTEQEAAAIAQAEGWTVDKVYTQPVKKPE 101 (125)
Q Consensus 60 ~sI~~~~~a~~Lgl~~~e~~~~~~~~GW~~d~~~~~p~~~~~ 101 (125)
.-++-.++|..||+|..-+-.....-.|...-.-+||.....
T Consensus 23 ~g~tQ~eIA~~lGiSr~~VSR~L~~A~~~~~lv~lfp~~~~l 64 (192)
T 1zx4_A 23 DGMSQKDIAAKEGLSQAKVTRALQAASAPEELVALFPVQSEL 64 (192)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHHHHTSCHHHHTTCSCGGGC
T ss_pred cCCCHHHHHHHhCcCHHHHHHHHHHhccchhhHHHcCCcccC
Confidence 558999999999999988888888888877433456654433
No 315
>3bhq_A Transcriptional regulator; bacterial RE proteins, structural genomics, joint center for structural JCSG, protein structure initiative, PSI-2; HET: MSE; 1.54A {Mesorhizobium loti}
Probab=21.40 E-value=1.4e+02 Score=19.61 Aligned_cols=22 Identities=23% Similarity=0.410 Sum_probs=19.2
Q ss_pred HHHHhcCCcchHHHHHHhCCCH
Q psy9207 54 LISKAYSSIPNTSLSEFLGVTE 75 (125)
Q Consensus 54 li~~AY~sI~~~~~a~~Lgl~~ 75 (125)
..++-|...+++++|+-.|++.
T Consensus 25 f~~~G~~~ts~~~IA~~aGvsk 46 (211)
T 3bhq_A 25 FISKGYDGTSMEEIATKAGASK 46 (211)
T ss_dssp HHHHCSTTCCHHHHHHHHTCCH
T ss_pred HHHhCcccCCHHHHHHHhCCCH
Confidence 3457899999999999999985
No 316
>2xdn_A HTH-type transcriptional regulator TTGR; transcription regulation, TETR family; 2.20A {Pseudomonas putida} PDB: 2uxu_A* 2uxi_A* 2uxo_A* 2uxp_A* 2uxh_A*
Probab=21.37 E-value=1.3e+02 Score=19.70 Aligned_cols=22 Identities=18% Similarity=0.353 Sum_probs=19.0
Q ss_pred HHHHhcCCcchHHHHHHhCCCH
Q psy9207 54 LISKAYSSIPNTSLSEFLGVTE 75 (125)
Q Consensus 54 li~~AY~sI~~~~~a~~Lgl~~ 75 (125)
..++-|..++++++|+-.|++.
T Consensus 24 f~~~G~~~~s~~~IA~~aGvsk 45 (210)
T 2xdn_A 24 FYKRGVARTTLADIAELAGVTR 45 (210)
T ss_dssp HHHHCSTTCCHHHHHHHHTCCT
T ss_pred HHHcCcccCcHHHHHHHHCCCh
Confidence 3457899999999999999974
No 317
>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B*
Probab=21.34 E-value=1.4e+02 Score=17.62 Aligned_cols=37 Identities=16% Similarity=0.167 Sum_probs=23.6
Q ss_pred HHHHHHHHHHhc---CCcchHHHHHH-hCCCHHHHHHHHHh
Q psy9207 48 QKRAISLISKAY---SSIPNTSLSEF-LGVTEQEAAAIAQA 84 (125)
Q Consensus 48 R~~~~~li~~AY---~sI~~~~~a~~-Lgl~~~e~~~~~~~ 84 (125)
|.+|++...+-. ..+.++.+|.. =|+++.|+...|.+
T Consensus 6 R~~Il~~~~~~~~~~~dvdl~~lA~~t~G~SGADl~~l~~e 46 (88)
T 3vlf_B 6 RANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVCTE 46 (88)
T ss_dssp HHHHHHHHHTTSCBCSCCCHHHHHHTCSSCCHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCCCCccCHHHHHHHcCCCcHHHHHHHHHH
Confidence 566666555433 35666776665 46888887777664
No 318
>3ccy_A Putative TETR-family transcriptional regulator; APC88698, structural G PSI-2, protein structure initiative; HET: MSE; 2.01A {Bordetella parapertussis 12822}
Probab=21.26 E-value=86 Score=20.45 Aligned_cols=31 Identities=6% Similarity=0.072 Sum_probs=24.1
Q ss_pred HHHHhcCCcchHHHHHHhCCCH----------HHHHHHHHh
Q psy9207 54 LISKAYSSIPNTSLSEFLGVTE----------QEAAAIAQA 84 (125)
Q Consensus 54 li~~AY~sI~~~~~a~~Lgl~~----------~e~~~~~~~ 84 (125)
..++-|..++++++|+-.|++. +++...+..
T Consensus 27 f~~~G~~~~s~~~Ia~~agvs~~t~Y~yF~sKe~L~~~~~~ 67 (203)
T 3ccy_A 27 FARQGYSETSIGDIARACECSKSRLYHYFDSKEAVLRDMLT 67 (203)
T ss_dssp HHHTCTTTSCHHHHHHHTTCCGGGGTTTCSCHHHHHHHHHH
T ss_pred HHHcCcccCCHHHHHHHhCCCcCeeeeeeCCHHHHHHHHHH
Confidence 3457899999999999999974 666555443
No 319
>3mvp_A TETR/ACRR transcriptional regulator; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 1.85A {Streptococcus mutans}
Probab=21.13 E-value=1.2e+02 Score=19.60 Aligned_cols=22 Identities=14% Similarity=0.282 Sum_probs=19.2
Q ss_pred HHHHhcCCcchHHHHHHhCCCH
Q psy9207 54 LISKAYSSIPNTSLSEFLGVTE 75 (125)
Q Consensus 54 li~~AY~sI~~~~~a~~Lgl~~ 75 (125)
..++-|..++++++|+-.|++.
T Consensus 39 ~~~~G~~~~t~~~Ia~~agvs~ 60 (217)
T 3mvp_A 39 FSDKTYFNVTTNEIAKKADVSV 60 (217)
T ss_dssp HHHHCGGGCCHHHHHHHHTSCH
T ss_pred HHHcCccccCHHHHHHHhCCCh
Confidence 3457899999999999999985
No 320
>1ngr_A P75 low affinity neurotrophin receptor; intracellular domain, death domain; NMR {Rattus norvegicus} SCOP: a.77.1.2
Probab=21.05 E-value=61 Score=19.48 Aligned_cols=33 Identities=12% Similarity=0.140 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHhcCCcchHHHHHHhCCCHHHHHHHHH
Q psy9207 47 VQKRAISLISKAYSSIPNTSLSEFLGVTEQEAAAIAQ 83 (125)
Q Consensus 47 vR~~~~~li~~AY~sI~~~~~a~~Lgl~~~e~~~~~~ 83 (125)
+|+++.+++. --.-..+|.-||++..++..|..
T Consensus 11 ~r~~l~~lL~----g~dW~~LA~~Lg~~~~~I~~~~~ 43 (85)
T 1ngr_A 11 KREEVEKLLN----GDTWRHLAGELGYQPEHIDSFTH 43 (85)
T ss_dssp TTHHHHHHSC----TTHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHhC----cCCHHHHHHHcCCCHHHHHHHHc
Confidence 4666666666 44557799999999888777654
No 321
>3dew_A Transcriptional regulator, TETR family; S genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE; 1.75A {Geobacter sulfurreducens}
Probab=21.02 E-value=72 Score=20.48 Aligned_cols=22 Identities=14% Similarity=0.277 Sum_probs=19.5
Q ss_pred HHHHhcCCcchHHHHHHhCCCH
Q psy9207 54 LISKAYSSIPNTSLSEFLGVTE 75 (125)
Q Consensus 54 li~~AY~sI~~~~~a~~Lgl~~ 75 (125)
..++-|..++++++|+-.|++.
T Consensus 21 ~~~~G~~~~t~~~Ia~~agvs~ 42 (206)
T 3dew_A 21 FAQKGFYGVSIRELAQAAGASI 42 (206)
T ss_dssp HHHHCGGGCCHHHHHHHHTCCH
T ss_pred HhcCCcccCcHHHHHHHhCCCH
Confidence 3567899999999999999985
No 322
>2b0l_A GTP-sensing transcriptional pleiotropic repressor; CODY, DNA-binding, nucleotide-binding, transcript regulation, winged HTH motif.; 2.90A {Bacillus subtilis} SCOP: a.4.5.66
Probab=21.02 E-value=69 Score=19.75 Aligned_cols=42 Identities=10% Similarity=0.174 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHhcCCc-chHHHHHHhCCCH---HHHHHHHHhcCCee
Q psy9207 47 VQKRAISLISKAYSSI-PNTSLSEFLGVTE---QEAAAIAQAEGWTV 89 (125)
Q Consensus 47 vR~~~~~li~~AY~sI-~~~~~a~~Lgl~~---~e~~~~~~~~GW~~ 89 (125)
+|+.|+..+ +.=..+ +..++|..||+|. -++.+...+.|+-.
T Consensus 29 i~~~I~~~l-~~g~~lps~~eLa~~lgVSr~tVr~al~~L~~~GlI~ 74 (102)
T 2b0l_A 29 AIEHIFEEL-DGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIE 74 (102)
T ss_dssp HHHHHTTSS-BTTEEEECHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHhhh-cCCCcCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEE
Confidence 367766332 233456 9999999999996 44555566789976
No 323
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=21.02 E-value=1.5e+02 Score=19.06 Aligned_cols=38 Identities=8% Similarity=0.052 Sum_probs=29.3
Q ss_pred hHHHHHHHHHHHHHcCCchHHHHHhccCCcHHHHHHHH
Q psy9207 4 PEIGQVWEVGKHLWNGNYPSIYSTLKRTWSDDIAHIMK 41 (125)
Q Consensus 4 ~~l~~~~~l~~~l~~~~y~~v~~~~~~~~s~~~~~~i~ 41 (125)
.|...+..+.-.+-+|+|...+.......++++.|..+
T Consensus 38 ~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~A 75 (115)
T 2uwj_G 38 DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFA 75 (115)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHH
T ss_pred HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHH
Confidence 56777888888899999999999998844565555543
No 324
>2h09_A Transcriptional regulator MNTR; transcription regulator, diphtheria toxin, manganese transport, structural genomics, NPPSFA; 2.10A {Escherichia coli}
Probab=20.98 E-value=1.7e+02 Score=18.58 Aligned_cols=44 Identities=16% Similarity=0.197 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHhcCCcchHHHHHHhCCCH---HHHHHHHHhcCCee
Q psy9207 45 DEVQKRAISLISKAYSSIPNTSLSEFLGVTE---QEAAAIAQAEGWTV 89 (125)
Q Consensus 45 ~~vR~~~~~li~~AY~sI~~~~~a~~Lgl~~---~e~~~~~~~~GW~~ 89 (125)
+.+-+.+..++... ..++..++|..||++. ...++-..+.||..
T Consensus 39 ~~~~~~i~~~l~~~-~~~~~~~la~~l~vs~~tvs~~l~~Le~~Glv~ 85 (155)
T 2h09_A 39 DDYVELISDLIREV-GEARQVDMAARLGVSQPTVAKMLKRLATMGLIE 85 (155)
T ss_dssp HHHHHHHHHHHHHH-SCCCHHHHHHHHTSCHHHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHHHHHhC-CCcCHHHHHHHhCcCHHHHHHHHHHHHHCCCEE
Confidence 33334444444433 6789999999999996 44455556679965
No 325
>2w53_A Repressor, SMet; antibiotic resistance, multi-drug efflux pump, transcription regulation, transcriptional repressor, DNA binding; 2.00A {Stenotrophomonas maltophilia} PDB: 3p9t_A*
Probab=20.82 E-value=1.8e+02 Score=19.07 Aligned_cols=22 Identities=9% Similarity=0.049 Sum_probs=19.2
Q ss_pred HHHHhcCCcchHHHHHHhCCCH
Q psy9207 54 LISKAYSSIPNTSLSEFLGVTE 75 (125)
Q Consensus 54 li~~AY~sI~~~~~a~~Lgl~~ 75 (125)
..++-|...+++++|+-.|++.
T Consensus 24 f~~~G~~~~s~~~IA~~aGvsk 45 (219)
T 2w53_A 24 FHEHGVARTTLEMIGARAGYTR 45 (219)
T ss_dssp HHHHCTTTCCHHHHHHHHTSCH
T ss_pred HHHhCcccCCHHHHHHHhCCCc
Confidence 3457899999999999999985
No 326
>3him_A Probable transcriptional regulator; TETR, bacterial, RHA1, PSI-2, MCSG, structural midwest center for structural genomics; 2.20A {Rhodococcus jostii}
Probab=20.77 E-value=99 Score=19.90 Aligned_cols=31 Identities=13% Similarity=0.210 Sum_probs=24.5
Q ss_pred HHHhcCCcchHHHHHHhCCCH----------HHHHHHHHhc
Q psy9207 55 ISKAYSSIPNTSLSEFLGVTE----------QEAAAIAQAE 85 (125)
Q Consensus 55 i~~AY~sI~~~~~a~~Lgl~~----------~e~~~~~~~~ 85 (125)
.++-|..++++++|+-.|++. +++...+...
T Consensus 30 ~~~G~~~~t~~~Ia~~agvs~~t~Y~~F~sK~~Ll~~~~~~ 70 (211)
T 3him_A 30 AAKGYGATTTREIAASLDMSPGAVYPHYKTKESLLYAISLE 70 (211)
T ss_dssp HHHCSTTCCHHHHHHHTTCCTTSSTTTCSSHHHHHHHHHHH
T ss_pred HHcCCCcCCHHHHHHHhCCCcChhhhcCCCHHHHHHHHHHH
Confidence 457999999999999999974 6766665544
No 327
>2qtq_A Transcriptional regulator, TETR family; transcription regulator, DNA/RNA-binding 3-helical bundle FO turn helix motif, HTH motif; HET: MSE; 1.85A {Novosphingobium aromaticivorans} PDB: 2rha_A*
Probab=20.71 E-value=1.5e+02 Score=19.09 Aligned_cols=21 Identities=19% Similarity=0.083 Sum_probs=18.9
Q ss_pred HHHhcCCcchHHHHHHhCCCH
Q psy9207 55 ISKAYSSIPNTSLSEFLGVTE 75 (125)
Q Consensus 55 i~~AY~sI~~~~~a~~Lgl~~ 75 (125)
.++-|..++++++|+-.|++.
T Consensus 30 ~~~G~~~~t~~~Ia~~agvs~ 50 (213)
T 2qtq_A 30 REGDVVDISLSELSLRSGLNS 50 (213)
T ss_dssp HHHTSSCCCHHHHHHHHCCCH
T ss_pred HHcCcccccHHHHHHHhCCCh
Confidence 457899999999999999985
No 328
>3ppb_A Putative TETR family transcription regulator; DNA-binding, helix-turn-helix motif, HTH motif, DNA/RNA-BIND helical bundle fold; HET: MSE PG4; 2.10A {Shewanella loihica}
Probab=20.64 E-value=1.7e+02 Score=18.42 Aligned_cols=21 Identities=14% Similarity=0.393 Sum_probs=18.7
Q ss_pred HHHhcCCcchHHHHHHhCCCH
Q psy9207 55 ISKAYSSIPNTSLSEFLGVTE 75 (125)
Q Consensus 55 i~~AY~sI~~~~~a~~Lgl~~ 75 (125)
.++-|..++++++|+-.|++.
T Consensus 23 ~~~G~~~~tv~~Ia~~agvs~ 43 (195)
T 3ppb_A 23 VSQGFHGTSTATIAREAGVAT 43 (195)
T ss_dssp HHTCSTTSCHHHHHHHHTCCH
T ss_pred HhcCcccCCHHHHHHHhCCCh
Confidence 456899999999999999985
No 329
>3qk9_A Mitochondrial import inner membrane translocase S TIM44; mitochondrion, protein transport; 3.10A {Saccharomyces cerevisiae} PDB: 2fxt_A
Probab=20.61 E-value=1.2e+02 Score=21.76 Aligned_cols=73 Identities=12% Similarity=0.114 Sum_probs=42.3
Q ss_pred cCCchHHHHHhcc-CCcHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHhCCCH----HHHHHHHHhcCCeecCc
Q psy9207 18 NGNYPSIYSTLKR-TWSDDIAHIMKALQDEVQKRAISLISKAYSSIPNTSLSEFLGVTE----QEAAAIAQAEGWTVDKV 92 (125)
Q Consensus 18 ~~~y~~v~~~~~~-~~s~~~~~~i~~l~~~vR~~~~~li~~AY~sI~~~~~a~~Lgl~~----~e~~~~~~~~GW~~d~~ 92 (125)
+.....++..++. +|+=.. ..|..-.|+.++..|-.||..=.++.+..+|+=.. ...++.-.++|.+.|+.
T Consensus 58 ~te~a~~l~~Ik~~DPsF~~----~~Fl~~a~~ai~p~Il~Af~~GD~~~Lk~llse~~y~~f~~~i~~r~~~G~~~d~~ 133 (222)
T 3qk9_A 58 ETESSRVYSQFKLMDPTFSN----ESFTRHLREYIVPEILEAYVKGDVKVLKKWFSEAPFNVYAAQQKIFKEQDVYADGR 133 (222)
T ss_dssp --CCHHHHTTCC-----CCH----HHHHHHHHHTHHHHHHHHHHHTCHHHHHHHBCHHHHHHHHHHHHHHHTTTEEECCE
T ss_pred CCHHHHHHHHHHHhCCCCCH----HHHHHHHHHHHHHHHHHHHHcCCHHHHHhhcCHHHHHHHHHHHHHHHHCCCEeeee
Confidence 3344455555555 444333 44555556666666778999999999999876542 33344445579988755
Q ss_pred ee
Q psy9207 93 YT 94 (125)
Q Consensus 93 ~~ 94 (125)
++
T Consensus 134 il 135 (222)
T 3qk9_A 134 IL 135 (222)
T ss_dssp EE
T ss_pred Ee
Confidence 44
No 330
>3dpj_A Transcription regulator, TETR family; APC88616, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MES; 1.90A {Silicibacter pomeroyi}
Probab=20.55 E-value=1.5e+02 Score=18.88 Aligned_cols=22 Identities=9% Similarity=0.347 Sum_probs=19.3
Q ss_pred HHHHhcCCcchHHHHHHhCCCH
Q psy9207 54 LISKAYSSIPNTSLSEFLGVTE 75 (125)
Q Consensus 54 li~~AY~sI~~~~~a~~Lgl~~ 75 (125)
..++-|..++++++|+-.|++.
T Consensus 21 ~~~~G~~~~t~~~IA~~Agvs~ 42 (194)
T 3dpj_A 21 FYRQGFAQTSFVDISAAVGISR 42 (194)
T ss_dssp HHHHCTTTCCHHHHHHHHTCCH
T ss_pred HHHcCcccCCHHHHHHHHCCCh
Confidence 3467899999999999999985
No 331
>3qqa_A CMER; alpha-helical, helix-turn-helix, DNA-binding, transcription regulation, transcription repressor, drug binding, transcri; HET: TCH; 2.20A {Campylobacter jejuni} PDB: 3hgy_A* 3qps_A* 2qco_A 3hgg_A*
Probab=20.55 E-value=1.2e+02 Score=19.69 Aligned_cols=41 Identities=12% Similarity=0.208 Sum_probs=28.0
Q ss_pred HHHHHHHHHHH-HHhcCCcchHHHHHHhCCCH----------HHHHHHHHhc
Q psy9207 45 DEVQKRAISLI-SKAYSSIPNTSLSEFLGVTE----------QEAAAIAQAE 85 (125)
Q Consensus 45 ~~vR~~~~~li-~~AY~sI~~~~~a~~Lgl~~----------~e~~~~~~~~ 85 (125)
+.+-+-...++ ++-|..++++++|+-.|++. +++...+...
T Consensus 22 ~~Il~aA~~lf~~~G~~~~t~~~IA~~agvs~~tlY~~F~sK~~L~~~~~~~ 73 (216)
T 3qqa_A 22 EKIKAVALELFLTKGYQETSLSDIIKLSGGSYSNIYDGFKSKEGLFFEILDD 73 (216)
T ss_dssp HHHHHHHHHHHHHTCTTTCCHHHHHHHHTTSCCSSSCSCCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcChhhCCHHHHHHHhCCCHHHHHHhcCCHHHHHHHHHHH
Confidence 33333344444 56899999999999999974 6666555443
No 332
>2hyj_A Putative TETR-family transcriptional regulator; HTH DNA binding motif, structural genomics, PSI-2, Pro structure initiative; 2.19A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=20.47 E-value=1.3e+02 Score=19.66 Aligned_cols=22 Identities=18% Similarity=0.185 Sum_probs=19.2
Q ss_pred HHHHhcCCcchHHHHHHhCCCH
Q psy9207 54 LISKAYSSIPNTSLSEFLGVTE 75 (125)
Q Consensus 54 li~~AY~sI~~~~~a~~Lgl~~ 75 (125)
..++-|...+++++|+-.|++.
T Consensus 25 f~~~G~~~~s~~~IA~~aGvsk 46 (200)
T 2hyj_A 25 ASEEGLDGITIGRLAEELEMSK 46 (200)
T ss_dssp HHHHCGGGCCHHHHHHHHTCCH
T ss_pred HHHcCcccCCHHHHHHHhCCCh
Confidence 4457899999999999999985
No 333
>3e8t_A Takeout 1, takeout-like protein 1; transport protein; HET: UQ8; 1.30A {Epiphyas postvittana} PDB: 3e8w_A*
Probab=20.42 E-value=1.3e+02 Score=20.77 Aligned_cols=42 Identities=14% Similarity=0.317 Sum_probs=32.6
Q ss_pred HHhccCCcHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHH
Q psy9207 26 STLKRTWSDDIAHIMKALQDEVQKRAISLISKAYSSIPNTSL 67 (125)
Q Consensus 26 ~~~~~~~s~~~~~~i~~l~~~vR~~~~~li~~AY~sI~~~~~ 67 (125)
..++..|.+-+..+-..+.+.+-..+...+.+.++.++.+++
T Consensus 176 ~~iN~nw~~i~~e~~p~i~~~~~~~~~~i~n~if~~~p~~~l 217 (220)
T 3e8t_A 176 TFLNQNWKQVSEEFGKPVMEAAAKKIFKNIKHFLAKVPIAEI 217 (220)
T ss_dssp HHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred HHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHH
Confidence 344557877777777788888888888888888888888765
No 334
>2v79_A DNA replication protein DNAD; primosome, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis}
Probab=20.42 E-value=1e+02 Score=20.00 Aligned_cols=34 Identities=15% Similarity=0.191 Sum_probs=26.2
Q ss_pred HHHhcCCcchHHHHHHhCCCHHHHHHHHHh---cCCe
Q psy9207 55 ISKAYSSIPNTSLSEFLGVTEQEAAAIAQA---EGWT 88 (125)
Q Consensus 55 i~~AY~sI~~~~~a~~Lgl~~~e~~~~~~~---~GW~ 88 (125)
......-++++.+|..+|+++.++...+.+ +|.-
T Consensus 45 ~~~g~~~ps~~~LA~~~~~s~~~v~~~L~~L~~KGlI 81 (135)
T 2v79_A 45 LEKGSYFPTPNQLQEGMSISVEECTNRLRMFIQKGFL 81 (135)
T ss_dssp HTTTCCSCCHHHHHTTSSSCHHHHHHHHHHHHHHTSC
T ss_pred HhcCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCE
Confidence 345567789999999999999888777554 5654
No 335
>1adr_A P22 C2 repressor; transcription regulation; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=20.39 E-value=97 Score=16.81 Aligned_cols=23 Identities=17% Similarity=0.368 Sum_probs=16.6
Q ss_pred CcchHHHHHHhCCCHHHHHHHHH
Q psy9207 61 SIPNTSLSEFLGVTEQEAAAIAQ 83 (125)
Q Consensus 61 sI~~~~~a~~Lgl~~~e~~~~~~ 83 (125)
.++..++|..+|++..-+..+..
T Consensus 18 gls~~~lA~~~gis~~~i~~~e~ 40 (76)
T 1adr_A 18 KIRQAALGKMVGVSNVAISQWER 40 (76)
T ss_dssp TCCHHHHHHHHTSCHHHHHHHHT
T ss_pred CCCHHHHHHHHCcCHHHHHHHHc
Confidence 57888888888888766555443
No 336
>4fe7_A Xylose operon regulatory protein; HTH_ARAC, helix-turn-helix, PBP, periplasmic binding protein binding transcription regulator, DNA xylose; HET: XYS; 2.90A {Escherichia coli} PDB: 4fe4_A
Probab=20.38 E-value=1.6e+02 Score=22.09 Aligned_cols=36 Identities=17% Similarity=0.201 Sum_probs=25.2
Q ss_pred HHHHHhc-CCcchHHHHHHhCCCHHHHHHHHHhc-CCe
Q psy9207 53 SLISKAY-SSIPNTSLSEFLGVTEQEAAAIAQAE-GWT 88 (125)
Q Consensus 53 ~li~~AY-~sI~~~~~a~~Lgl~~~e~~~~~~~~-GW~ 88 (125)
+.|...| ..++++++|..+|+|..-+...+++. |=+
T Consensus 312 ~~i~~~~~~~~~~~~~a~~~~~s~~~l~r~f~~~~g~s 349 (412)
T 4fe7_A 312 HYIRNHACKGIKVDQVLDAVGISRSNLEKRFKEEVGET 349 (412)
T ss_dssp HHHHHHGGGTCCHHHHHHHTTCCHHHHHHHHHHHHSSC
T ss_pred HHHHhhccCCCCHHHHHHHHCcCHHHHHHHHHHHHCcC
Confidence 3333333 57999999999999987776666554 544
No 337
>1zug_A Phage 434 CRO protein; gene regulating protein, transcription regulation; NMR {Phage 434} SCOP: a.35.1.2 PDB: 2cro_A 3cro_L*
Probab=20.31 E-value=1.1e+02 Score=16.31 Aligned_cols=24 Identities=25% Similarity=0.290 Sum_probs=17.1
Q ss_pred CCcchHHHHHHhCCCHHHHHHHHH
Q psy9207 60 SSIPNTSLSEFLGVTEQEAAAIAQ 83 (125)
Q Consensus 60 ~sI~~~~~a~~Lgl~~~e~~~~~~ 83 (125)
..++..++|..+|++..-+..+..
T Consensus 15 ~glsq~~lA~~~gis~~~i~~~e~ 38 (71)
T 1zug_A 15 LKMTQTELATKAGVKQQSIQLIEA 38 (71)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred cCCCHHHHHHHhCCCHHHHHHHHc
Confidence 457788888888888766655543
No 338
>1zs4_A Regulatory protein CII; helix-turn-helix, transcription activator, transcription-DNA; HET: DNA; 1.70A {Enterobacteria phage lambda} SCOP: a.35.1.9
Probab=20.29 E-value=1.3e+02 Score=18.28 Aligned_cols=19 Identities=16% Similarity=0.293 Sum_probs=13.8
Q ss_pred CCcchHHHHHHhCCCHHHH
Q psy9207 60 SSIPNTSLSEFLGVTEQEA 78 (125)
Q Consensus 60 ~sI~~~~~a~~Lgl~~~e~ 78 (125)
.+.+-..+|..+|+++..+
T Consensus 23 a~~gQ~~vAe~~GvdeStI 41 (83)
T 1zs4_A 23 AMLGTEKTAEAVGVDKSQI 41 (83)
T ss_dssp HHHCHHHHHHHHTSCHHHH
T ss_pred HHHhhHHHHHHhCCCHHHH
Confidence 3467778899999987443
No 339
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=20.27 E-value=1.2e+02 Score=16.75 Aligned_cols=43 Identities=19% Similarity=0.395 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHhCCCHHHHHH
Q psy9207 34 DDIAHIMKALQDEVQKRAISLISKAYSSIPNTSLSEFLGVTEQEAAA 80 (125)
Q Consensus 34 ~~~~~~i~~l~~~vR~~~~~li~~AY~sI~~~~~a~~Lgl~~~e~~~ 80 (125)
..+...+..|.+.-| +++.+. +.-.+..++|..||++..-+..
T Consensus 8 ~~l~~~l~~L~~~e~-~vl~l~---~~g~s~~eIA~~l~is~~tV~~ 50 (79)
T 1x3u_A 8 NDIRARLQTLSERER-QVLSAV---VAGLPNKSIAYDLDISPRTVEV 50 (79)
T ss_dssp HHHHHHHHHHCHHHH-HHHHHH---TTTCCHHHHHHHTTSCHHHHHH
T ss_pred HHHHHHHHhCCHHHH-HHHHHH---HcCCCHHHHHHHHCcCHHHHHH
Confidence 445555566655444 334443 7788999999999998754433
No 340
>1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48
Probab=20.27 E-value=1.4e+02 Score=17.40 Aligned_cols=39 Identities=10% Similarity=0.142 Sum_probs=27.4
Q ss_pred HHHHHHHHhcCCcchHHH----HHHhCCCHHHH---HHHHHhcCCee
Q psy9207 50 RAISLISKAYSSIPNTSL----SEFLGVTEQEA---AAIAQAEGWTV 89 (125)
Q Consensus 50 ~~~~li~~AY~sI~~~~~----a~~Lgl~~~e~---~~~~~~~GW~~ 89 (125)
.++..+.. ...++..++ |..+|++..-+ ++-..+.||..
T Consensus 12 ~iL~~l~~-~~~~~~~el~~~la~~l~is~~tvs~~l~~Le~~gli~ 57 (99)
T 1tbx_A 12 IVLAYLYD-NEGIATYDLYKKVNAEFPMSTATFYDAKKFLIQEGFVK 57 (99)
T ss_dssp HHHHHHTT-CTTCBHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHH-cCCcCHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCEE
Confidence 45555544 467899999 89999997554 44455679986
No 341
>3on2_A Probable transcriptional regulator; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG; HET: MSE PG6; 1.96A {Rhodococcus jostii}
Probab=20.23 E-value=82 Score=20.11 Aligned_cols=21 Identities=14% Similarity=0.172 Sum_probs=16.3
Q ss_pred HHHhcCCcchHHHHHHhCCCH
Q psy9207 55 ISKAYSSIPNTSLSEFLGVTE 75 (125)
Q Consensus 55 i~~AY~sI~~~~~a~~Lgl~~ 75 (125)
.++-|..++++++|+-.|++.
T Consensus 26 ~~~G~~~~t~~~IA~~agvs~ 46 (199)
T 3on2_A 26 EKDGVDGLSLRQLAREAGVSH 46 (199)
T ss_dssp HHHCGGGCCHHHHHHHTC---
T ss_pred HhcChhhhhHHHHHHHhCCCh
Confidence 356899999999999999975
No 342
>2wui_A MEXZ, transcriptional regulator; gene regulation, transcription regulation, TETR, DNA-binding transcription; 2.90A {Pseudomonas aeruginosa}
Probab=20.23 E-value=1.6e+02 Score=19.28 Aligned_cols=21 Identities=19% Similarity=0.355 Sum_probs=18.8
Q ss_pred HHHhcCCcchHHHHHHhCCCH
Q psy9207 55 ISKAYSSIPNTSLSEFLGVTE 75 (125)
Q Consensus 55 i~~AY~sI~~~~~a~~Lgl~~ 75 (125)
.++-|...+++++|+-.|++.
T Consensus 25 ~~~G~~~~s~~~IA~~aGvsk 45 (210)
T 2wui_A 25 LEKGVGTTAMADLADAAGVSR 45 (210)
T ss_dssp HHSCTTTCCHHHHHHHHTSCH
T ss_pred HHcCccccCHHHHHHHhCCCH
Confidence 457899999999999999985
No 343
>1z6r_A MLC protein; transcriptional repressor, ROK family protein, DNA binding P helix-turn-helix, phosphotransferase system; 2.70A {Escherichia coli} SCOP: a.4.5.63 c.55.1.10 c.55.1.10 PDB: 3bp8_A
Probab=20.21 E-value=2.2e+02 Score=21.34 Aligned_cols=47 Identities=9% Similarity=0.113 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHhcCCcchHHHHHHhCCCHHHH---HHHHHhcCCeec
Q psy9207 43 LQDEVQKRAISLISKAYSSIPNTSLSEFLGVTEQEA---AAIAQAEGWTVD 90 (125)
Q Consensus 43 l~~~vR~~~~~li~~AY~sI~~~~~a~~Lgl~~~e~---~~~~~~~GW~~d 90 (125)
++..=|.+|++++.+ ...+|..++++.+|||..-+ .+-..+.|+-..
T Consensus 13 ~r~~n~~~il~~l~~-~~~~sr~~la~~~~ls~~tv~~~v~~L~~~g~i~~ 62 (406)
T 1z6r_A 13 IKQTNAGAVYRLIDQ-LGPVSRIDLSRLAQLAPASITKIVHEMLEAHLVQE 62 (406)
T ss_dssp HHHHHHHHHHHHHHS-SCSCCHHHHHHHTTCCHHHHHHHHHHHHHHTSEEE
T ss_pred HHHhHHHHHHHHHHH-cCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCcEEe
Confidence 445556678888865 57899999999999997444 333444687664
No 344
>3vib_A MTRR; helix-turn-helix motif, DNA binding, DNA binding protein; HET: CXS; 2.40A {Neisseria gonorrhoeae}
Probab=20.14 E-value=1.4e+02 Score=19.54 Aligned_cols=22 Identities=18% Similarity=0.267 Sum_probs=19.7
Q ss_pred HHHHhcCCcchHHHHHHhCCCH
Q psy9207 54 LISKAYSSIPNTSLSEFLGVTE 75 (125)
Q Consensus 54 li~~AY~sI~~~~~a~~Lgl~~ 75 (125)
..++-|..++++++|+-.|++.
T Consensus 23 f~~~G~~~~s~~~IA~~aGvs~ 44 (210)
T 3vib_A 23 FYRKGIARTSLNEIAQAAGVTR 44 (210)
T ss_dssp HHHHCTTTCCHHHHHHHHTSCH
T ss_pred HHHhCcccCCHHHHHHHHCcCH
Confidence 4578999999999999999985
No 345
>3kkc_A TETR family transcriptional regulator; APC20805, structural genomics, PSI-2, protein structure initiative; 2.50A {Streptococcus agalactiae 2603V}
Probab=20.10 E-value=68 Score=20.29 Aligned_cols=20 Identities=20% Similarity=0.273 Sum_probs=18.1
Q ss_pred HHhcCCcchHHHHHHhCCCH
Q psy9207 56 SKAYSSIPNTSLSEFLGVTE 75 (125)
Q Consensus 56 ~~AY~sI~~~~~a~~Lgl~~ 75 (125)
++-|..++++++|+-.|++.
T Consensus 27 ~~G~~~~tv~~Ia~~agvs~ 46 (177)
T 3kkc_A 27 ENDYSKITVQDVIGLANVGR 46 (177)
T ss_dssp TSCTTTCCHHHHHHHHCCCH
T ss_pred hCChhHhhHHHHHHHhCCcH
Confidence 56899999999999999985
No 346
>2ev1_A Hypothetical protein RV1264/MT1302; alpha-helical, regulatory domain of adenylyl cyclase, oleic lyase; HET: OLA 1PE; 1.60A {Mycobacterium tuberculosis} PDB: 2ev2_A* 2ev3_A* 2ev4_A*
Probab=20.09 E-value=2.1e+02 Score=20.58 Aligned_cols=28 Identities=21% Similarity=0.266 Sum_probs=23.7
Q ss_pred cchHHHHHHhCCCHHHHHHHHHhcCCee
Q psy9207 62 IPNTSLSEFLGVTEQEAAAIAQAEGWTV 89 (125)
Q Consensus 62 I~~~~~a~~Lgl~~~e~~~~~~~~GW~~ 89 (125)
+++.+++...|++.+.+..+=...|.-.
T Consensus 79 vT~~eVAe~aGv~~e~~rr~wRalGfp~ 106 (222)
T 2ev1_A 79 VSAREISENYGVDLELLQRVQRAVGLAR 106 (222)
T ss_dssp ECHHHHHHHHTCCHHHHHHHHHHHCCCC
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHhCCCC
Confidence 3999999999999999988877777543
No 347
>2yve_A Transcriptional regulator; helix-turn-helix, TETR-family; HET: MBT; 1.40A {Corynebacterium glutamicum} PDB: 1v7b_A 2zoy_A 2yvh_A 2dh0_A* 2zoz_A*
Probab=20.07 E-value=97 Score=20.02 Aligned_cols=22 Identities=18% Similarity=0.295 Sum_probs=19.5
Q ss_pred HHHHhcCCcchHHHHHHhCCCH
Q psy9207 54 LISKAYSSIPNTSLSEFLGVTE 75 (125)
Q Consensus 54 li~~AY~sI~~~~~a~~Lgl~~ 75 (125)
..++-|..++++++|+-.|++.
T Consensus 17 ~~~~G~~~~t~~~Ia~~agvs~ 38 (185)
T 2yve_A 17 IGEYSLETLSYDSLAEATGLSK 38 (185)
T ss_dssp HHHSCSTTCCHHHHHHHHCCCH
T ss_pred HHHcChhhccHHHHHHHhCCCh
Confidence 4567899999999999999985
Done!