RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy9207
         (125 letters)



>d1rz4a1 a.4.5.53 (A:132-216) Eukaryotic translation initiation
           factor 3 subunit 12, eIF3k, C-terminal domain {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 85

 Score = 40.4 bits (95), Expect = 3e-06
 Identities = 17/70 (24%), Positives = 30/70 (42%), Gaps = 2/70 (2%)

Query: 44  QDEVQKRAISLISKAYSSIPNTSLSEFLG-VTEQEAAAIAQAEGWTVDKVYTQPVKKPEE 102
           +D V+K    ++   Y  I    L+E LG +++ +        GW+ D+     +   EE
Sbjct: 4   EDSVRKFICHVVGITYQHIDRWLLAEMLGDLSDSQLKVWMSKYGWSADESGQIFICSQEE 63

Query: 103 YATP-NITDD 111
              P NI + 
Sbjct: 64  SIKPKNIVEK 73


>d1ufma_ a.4.5.47 (A:) COP9 signalosome complex subunit 4, GSN4
          {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 84

 Score = 30.5 bits (69), Expect = 0.014
 Identities = 11/41 (26%), Positives = 17/41 (41%)

Query: 43 LQDEVQKRAISLISKAYSSIPNTSLSEFLGVTEQEAAAIAQ 83
          L   V +  +   SK Y++I    L   L +   +A  IA 
Sbjct: 12 LDRAVIEHNLLSASKLYNNITFEELGALLEIPAAKAEKIAS 52


>d1j5ya1 a.4.5.1 (A:3-67) Putative transcriptional regulator
          TM1602, N-terminal domain {Thermotoga maritima [TaxId:
          2336]}
          Length = 65

 Score = 25.8 bits (57), Expect = 0.50
 Identities = 9/37 (24%), Positives = 19/37 (51%)

Query: 40 MKALQDEVQKRAISLISKAYSSIPNTSLSEFLGVTEQ 76
          MK ++ E  K  + ++ ++   +    L+E L V+ Q
Sbjct: 1  MKTVRQERLKSIVRILERSKEPVSGAQLAEELSVSRQ 37


>d1iuka_ c.2.1.8 (A:) Hypothetical protein TT1466 {Thermus
           thermophilus [TaxId: 274]}
          Length = 136

 Score = 24.3 bits (52), Expect = 3.6
 Identities = 4/19 (21%), Positives = 6/19 (31%)

Query: 71  LGVTEQEAAAIAQAEGWTV 89
            G+   E     +  G  V
Sbjct: 102 SGIRHPEFEKALKEAGIPV 120


>g1qtn.1 c.17.1.1 (A:,B:) Caspase-8 {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 242

 Score = 24.8 bits (53), Expect = 3.8
 Identities = 9/40 (22%), Positives = 14/40 (35%)

Query: 32  WSDDIAHIMKALQDEVQKRAISLISKAYSSIPNTSLSEFL 71
             DDI  I+  +  EV  +            P  +L + L
Sbjct: 198 RGDDILTILTEVNYEVSNKDDKKNMGKQMPQPTFTLRKKL 237


>d1d2na_ c.37.1.20 (A:) Hexamerization domain of
           N-ethylmalemide-sensitive fusion (NSF) protein {Chinese
           hamster (Cricetulus griseus) [TaxId: 10029]}
          Length = 246

 Score = 24.5 bits (52), Expect = 4.7
 Identities = 9/50 (18%), Positives = 21/50 (42%), Gaps = 4/50 (8%)

Query: 34  DDIAHIMKALQDE----VQKRAISLISKAYSSIPNTSLSEFLGVTEQEAA 79
            +   I + ++ +      K+ + LI  +    P   + +FL +  +E A
Sbjct: 193 KERTTIAQQVKGKKVWIGIKKLLMLIEMSLQMDPEYRVRKFLALLREEGA 242


>d1a4ea_ e.5.1.1 (A:) Catalase I {Baker's yeast (Saccharomyces
           cerevisiae) [TaxId: 4932]}
          Length = 488

 Score = 24.1 bits (52), Expect = 5.9
 Identities = 3/25 (12%), Positives = 12/25 (48%)

Query: 34  DDIAHIMKALQDEVQKRAISLISKA 58
            +I   ++    ++Q+R   + ++ 
Sbjct: 451 YNIGIHVEGACPQIQQRVYDMFARV 475


>d1nf1a_ a.116.1.2 (A:) GAP related domain of neurofibromin {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 324

 Score = 24.2 bits (52), Expect = 6.8
 Identities = 9/32 (28%), Positives = 14/32 (43%)

Query: 38  HIMKALQDEVQKRAISLISKAYSSIPNTSLSE 69
            I+      + +R + L+SK   SI N  L  
Sbjct: 199 GILDKKPPPIIERGLKLMSKILQSIANHVLFT 230


>d1p80a2 e.5.1.1 (A:27-597) Catalase II {Escherichia coli, HPII
           [TaxId: 562]}
          Length = 571

 Score = 23.8 bits (51), Expect = 9.3
 Identities = 4/44 (9%), Positives = 21/44 (47%), Gaps = 1/44 (2%)

Query: 37  AHIMKALQDEVQKRAISLISKAYSSIPNTSLSEFLGVTEQEAAA 80
             + K ++  +++R +  ++    ++   ++++ LG+   +   
Sbjct: 503 FELSKVVRPYIRERVVDQLAHIDLTL-AQAVAKNLGIELTDDQL 545


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.312    0.128    0.378 

Gapped
Lambda     K      H
   0.267   0.0484    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 470,687
Number of extensions: 18598
Number of successful extensions: 54
Number of sequences better than 10.0: 1
Number of HSP's gapped: 54
Number of HSP's successfully gapped: 12
Length of query: 125
Length of database: 2,407,596
Length adjustment: 75
Effective length of query: 50
Effective length of database: 1,377,846
Effective search space: 68892300
Effective search space used: 68892300
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 48 (22.9 bits)