BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9208
(446 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3IIB|A Chain A, Crystal Structure Of Peptidase M28 Precursor (Yp_926796.1)
From Shewanella Amazonensis Sb2b At 1.70 A Resolution
Length = 444
Score = 184 bits (467), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 121/432 (28%), Positives = 206/432 (47%), Gaps = 45/432 (10%)
Query: 55 RIIAAVSQGGHFQAHTYSTLADFVDKFGPRMTGSEALENSIDFMVKESKDFGLE-VWTEN 113
++ ++Q + Y + + GPR+ GSE + ++D+ + + + G + V+ E
Sbjct: 8 KVAEQLAQKAQSSSLGYDIVESLTVEVGPRLAGSEQDKVAVDWAIAKLQSLGFDRVYKEP 67
Query: 114 VTAPKWERHFEKVTLVKPWKSDIPVSTLGGSVGTPQGGITAEV-------------AGKI 160
VT P W R K +++ P+ + V+ LGGS+ TP G++A + AG +
Sbjct: 68 VTVPVWRRGIAKASILSPFPQPLVVTALGGSIATPAQGLSATIVRFDTLQDLQNAEAGSL 127
Query: 161 ---VVF-------NQDFVSYGETVKYRSKGASVASKYGAVATLIRSVTPYSLATPHTGHQ 210
+ F ++D YG+T RS+GA A++ GAV +IRS+ HTG
Sbjct: 128 NDKIAFIDAKTERHRDGKGYGQTASGRSRGAVAAAEKGAVGIIIRSIGTDHDRXAHTGXX 187
Query: 211 SYDAAVKPIPTACIAPEYAEMLYRMYRRGDGPVVVSINIDARNVGTTNTRNTIVQIRGRE 270
Y+ V IP A I+ A+++ +R D VV+S+ + + G T + N I +++G
Sbjct: 188 RYEEGVTAIPAAAISNPDADLINAXLKR-DKEVVISLELGSERRGETTSYNVIAEVKGST 246
Query: 271 CPDKVVITSGHLDSWDVGQGAMDDGGGAFISG-------------------ILWTAEEQG 311
D++V+ HLDSWD G GA+DDG G I +L+ AEE G
Sbjct: 247 KADEIVLIGAHLDSWDEGTGAIDDGAGVAIVTAAAKHILDLPQKPERTIRVVLYAAEELG 306
Query: 312 YVGAIAYVKKHQEELKNITVAMESDDGTFTPFGLSLKGSPEAACILNKVLRLFKPINATR 371
+G Y K+H+ EL+ +A ESD G + + + + A + ++ +P+
Sbjct: 307 LLGGKTYAKEHEAELEKHYIAAESDFGAGPIYQIDWRVADTAHSPVINAXKVAEPLGVA- 365
Query: 372 LVQSKYPVGSDIELFQEKNIPGVALLNDNAKYFWYHHTRADTMSVLDSDTLDLCTALWGG 431
+K G D+ +P +L D + YF YHHT DT+ ++ + L A++
Sbjct: 366 AGNNKASGGPDVSXLPALGVPVASLRQDGSDYFDYHHTPNDTLDKINPEALAQNVAVYAQ 425
Query: 432 VAYILADLSVEL 443
A++ A+ VEL
Sbjct: 426 FAWVXANSKVEL 437
>pdb|2EK8|A Chain A, Aminopeptidase From Aneurinibacillus Sp. Strain Am-1
pdb|2EK9|A Chain A, Aminopeptidase From Aneurinibacillus Sp. Strain Am-1 With
Bestatin
Length = 421
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 89/397 (22%), Positives = 150/397 (37%), Gaps = 73/397 (18%)
Query: 83 PRMTGSEALENSIDFMVKESKDFGLEVWT-----ENVTAPKW-------ERHFEKVTLVK 130
PR+ GS ++ ++ ++ K +G V E TAP E+ +
Sbjct: 29 PRVAGSPEELKAVRYIEQQFKSYGYHVEVQPFQFEGYTAPSEVTLKIGTEKKEGEAFTYS 88
Query: 131 PWKSDIPVSTLGGSVGTPQGGITAEVAGKIVVFNQDFVSYGETVKYRSKGASVASKYGAV 190
P SD+ + +GT ++ GKI + + +S+ + V+ A+K GA
Sbjct: 89 P-NSDVTAELVYVGLGTTADVAGKDLNGKIALIQRGNISFADKVRN-------AAKQGAK 140
Query: 191 ATLIRSVTPYSLATPHTGHQ-SYDAAVKPIPTACIAPEYAEMLYRMYRRGDGPVVVSINI 249
A +I + T L G S+ AAV I + + L R G+ + ++ +
Sbjct: 141 AVIIYNNTDGKLNGTLGGSDASFVAAV------GITKQEGDALAANLRAGE-KITATVKV 193
Query: 250 DARNVGTTNTRNTIVQIR---GRECPDKVVITSGHLDSWDVGQGAMDDGGGAFIS----- 301
V T + N I + ++ + ++I H DS + GA DD G ++
Sbjct: 194 AGAEVKTLTSHNVIATKKPDANKKNTNDIIIIGSHHDSVEKAPGANDDASGVAVTLELAR 253
Query: 302 ------------GILWTAEEQGYVGAIAYVKKHQEELKNITVAMESDDGTFTPFGLSLKG 349
I + AEE G +G+ Y E+ T+ M F L + G
Sbjct: 254 VMSKLKTDTELRFITFGAEENGLIGSKKYAASLSEDEIKRTIGM---------FQLDMVG 304
Query: 350 SPEAACIL--------NKVLRLFKPINATRLVQSKYPVG----SDIELFQEKNIPGVALL 397
S +A ++ N+V L A+ + P G SD E F IP +
Sbjct: 305 SKDAGDLIMYTIDGKKNRVTDLGAA--ASSRLSGVLPYGQEGRSDHESFHALGIPAALFI 362
Query: 398 NDNAKYFWYHHTRADTMSVLDSDTLDLCTALWGGVAY 434
+ + WY HT DT+ + + LD + G Y
Sbjct: 363 HAPVEP-WY-HTPNDTLDKISKEKLDNVADIVGSAVY 397
>pdb|1RTQ|A Chain A, The 0.95 Angstrom Resolution Crystal Structure Of The
Aminopeptidase From Aeromonas Proteolytica
pdb|1TXR|A Chain A, X-Ray Crystal Structure Of Bestatin Bound To Aap
pdb|1XRY|A Chain A, Crystal Structure Of Aeromonas Proteolytica Aminopeptidase
In Complex With Bestatin
pdb|2DEA|A Chain A, Crystal Structure Of The Aminopeptidase Of Aeromonas
Proteolytica At Ph 4.7
pdb|2NYQ|A Chain A, Structure Of Vibrio Proteolyticus Aminopeptidase With A
Bound Trp Fragment Of Dlwcf
pdb|3FH4|A Chain A, Crystal Structure Of Recombinant Vibrio Proteolyticus
Aminopeptidase
pdb|3VH9|A Chain A, Crystal Structure Of Aeromonas Proteolytica Aminopeptidase
Complexed With 8-Quinolinol
Length = 299
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 45/106 (42%), Gaps = 27/106 (25%)
Query: 258 NTRNTIVQIRGRECPDKVVITSGHLDS--------WDVGQGAMDDGGG------------ 297
N ++ ++ I G E PD+ ++ GHLDS V GA DD G
Sbjct: 74 NQKSVVMTITGSEAPDEWIVIGGHLDSTIGSHTNEQSVAPGADDDASGIAAVTEVIRVLS 133
Query: 298 -------AFISGILWTAEEQGYVGAIAYVKKHQEELKNITVAMESD 336
I+ + + AEE G G+ +++ E KN+ A++ D
Sbjct: 134 ENNFQPKRSIAFMAYAAEEVGLRGSQDLANQYKSEGKNVVSALQLD 179
>pdb|3B3V|A Chain A, Crystal Structure Of The S228a Mutant Of The
Aminopeptidase From Vibrio Proteolyticus
pdb|3B3W|A Chain A, Crystal Structure Of The S228a Mutant Of The
Aminopeptidase From Vibrio Proteolyticus In Complex With
Leucine
pdb|3B7I|A Chain A, Crystal Structure Of The S228a Mutant Of The
Aminopeptidase From Vibrio Proteolyticus In Complex With
Leucine Phosphonic Acid
Length = 291
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 45/106 (42%), Gaps = 27/106 (25%)
Query: 258 NTRNTIVQIRGRECPDKVVITSGHLDS--------WDVGQGAMDDGGG------------ 297
N ++ ++ I G E PD+ ++ GHLDS V GA DD G
Sbjct: 74 NQKSVVMTITGSEAPDEWIVIGGHLDSTIGSHTNEQSVAPGADDDASGIAAVTEVIRVLS 133
Query: 298 -------AFISGILWTAEEQGYVGAIAYVKKHQEELKNITVAMESD 336
I+ + + AEE G G+ +++ E KN+ A++ D
Sbjct: 134 ENNFQPKRSIAFMAYAAEEVGLRGSQDLANQYKSEGKNVVSALQLD 179
>pdb|1CP6|A Chain A, 1-Butaneboronic Acid Binding To Aeromonas Proteolytica
Aminopeptidase
pdb|1FT7|A Chain A, Aap Complexed With L-Leucinephosphonic Acid
pdb|1LOK|A Chain A, The 1.20 Angstrom Resolution Crystal Structure Of The
Aminopeptidase From Aeromonas Proteolytica Complexed
With Tris: A Tale Of Buffer Inhibition
pdb|2PRQ|A Chain A, X-Ray Crystallographic Characterization Of The Co(Ii)-
Substituted Tris-Bound Form Of The Aminopeptidase From
Aeromonas Proteolytica
pdb|1AMP|A Chain A, Crystal Structure Of Aeromonas Proteolytica
Aminopeptidase: A Prototypical Member Of The
Co-Catalytic Zinc Enzyme Family
pdb|2IQ6|A Chain A, Crystal Structure Of The Aminopeptidase From Vibrio
Proteolyticus In Complexation With Leucyl-Leucyl-Leucine
Length = 291
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 45/106 (42%), Gaps = 27/106 (25%)
Query: 258 NTRNTIVQIRGRECPDKVVITSGHLDS--------WDVGQGAMDDGGG------------ 297
N ++ ++ I G E PD+ ++ GHLDS V GA DD G
Sbjct: 74 NQKSVVMTITGSEAPDEWIVIGGHLDSTIGSHTNEQSVAPGADDDASGIAAVTEVIRVLS 133
Query: 298 -------AFISGILWTAEEQGYVGAIAYVKKHQEELKNITVAMESD 336
I+ + + AEE G G+ +++ E KN+ A++ D
Sbjct: 134 ENNFQPKRSIAFMAYAAEEVGLRGSQDLANQYKSEGKNVVSALQLD 179
>pdb|3B35|A Chain A, Crystal Structure Of The M180a Mutant Of The
Aminopeptidase From Vibrio Proteolyticus
pdb|3B3C|A Chain A, Crystal Structure Of The M180a Mutant Of The
Aminopeptidase From Vibrio Proteolyticus In Complex With
Leucine Phosphonic Acid
pdb|3B3S|A Chain A, Crystal Structure Of The M180a Mutant Of The
Aminopeptidase From Vibrio Proteolyticus In Complex With
Leucine
Length = 291
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 45/106 (42%), Gaps = 27/106 (25%)
Query: 258 NTRNTIVQIRGRECPDKVVITSGHLDS--------WDVGQGAMDDGGG------------ 297
N ++ ++ I G E PD+ ++ GHLDS V GA DD G
Sbjct: 74 NQKSVVMTITGSEAPDEWIVIGGHLDSTIGSHTNEQSVAPGADDDASGIAAVTEVIRVLS 133
Query: 298 -------AFISGILWTAEEQGYVGAIAYVKKHQEELKNITVAMESD 336
I+ + + AEE G G+ +++ E KN+ A++ D
Sbjct: 134 ENNFQPKRSIAFMAYAAEEVGLRGSQDLANQYKSEGKNVVSALQLD 179
>pdb|1IGB|A Chain A, Aeromonas Proteolytica Aminopeptidase Complexed With The
Inhibitor Para-Iodo-D-Phenylalanine Hydroxamate
Length = 291
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 45/106 (42%), Gaps = 27/106 (25%)
Query: 258 NTRNTIVQIRGRECPDKVVITSGHLDS--------WDVGQGAMDDGGG------------ 297
N ++ ++ I G E PD+ ++ GHLDS V GA DD G
Sbjct: 74 NQKSVVMTITGSEAPDEWIVIGGHLDSTIGSHTNEQSVAPGADDDASGIAAVTEVIRVLS 133
Query: 298 -------AFISGILWTAEEQGYVGAIAYVKKHQEELKNITVAMESD 336
I+ + + AEE G G+ +++ E KN+ A++ D
Sbjct: 134 ENNFQPKRSIAFMAYAAEEVGLRGSQDLANQYKSEGKNVVSALQLD 179
>pdb|2C6C|A Chain A, Membrane-Bound Glutamate Carboxypeptidase Ii (Gcpii) In
Complex With Gpi-18431
(S)-2-(4-Iodobenzylphosphonomethyl)- Pentanedioic Acid
pdb|2C6P|A Chain A, Membrane-Bound Glutamate Carboxypeptidase Ii (Gcpii) In
Complex With Phosphate Anion
pdb|2JBJ|A Chain A, Membrane-Bound Glutamate Carboxypeptidase Ii (Gcpii) In
Complex With 2-Pmpa (2-Phosphonomethyl-Pentanedioic
Acid)
pdb|2JBK|A Chain A, Membrane-bound Glutamate Carboxypeptidase Ii (gcpii) In
Complex With Quisqualic Acid (quisqualate,
Alpha-amino-3,5- Dioxo-1,2,4-oxadiazolidine-2-propanoic
Acid)
pdb|2C6G|A Chain A, Membrane-Bound Glutamate Carboxypeptidase Ii (Gcpii) With
Bound Glutamate
pdb|2CIJ|A Chain A, Membrane-Bound Glutamate Carboxypeptidase Ii (Gcpii) With
Bound Methionine
Length = 707
Score = 37.7 bits (86), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 48/116 (41%), Gaps = 23/116 (19%)
Query: 245 VSINIDARNVGTTNTRNTIVQIRGRECPDKVVITSGHLDSWDVGQGAMDDGGGAFISGIL 304
V ++I + N T N I +RG PD+ VI GH DSW G G G A + I+
Sbjct: 299 VKMHIHSTN-EVTRIYNVIGTLRGAVEPDRYVILGGHRDSWVFG-GIDPQSGAAVVHEIV 356
Query: 305 ---------------------WTAEEQGYVGAIAYVKKHQEELKNITVAMESDDGT 339
W AEE G +G+ + +++ L+ VA + D +
Sbjct: 357 RSFGTLKKEGWRPRRTILFASWDAEEFGLLGSTEWAEENSRLLQERGVAYINADSS 412
>pdb|1Z8L|A Chain A, Crystal Structure Of Prostate-Specific Membrane Antigen, A
Tumor Marker And Peptidase
pdb|1Z8L|B Chain B, Crystal Structure Of Prostate-Specific Membrane Antigen, A
Tumor Marker And Peptidase
pdb|1Z8L|C Chain C, Crystal Structure Of Prostate-Specific Membrane Antigen, A
Tumor Marker And Peptidase
pdb|1Z8L|D Chain D, Crystal Structure Of Prostate-Specific Membrane Antigen, A
Tumor Marker And Peptidase
Length = 695
Score = 37.7 bits (86), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 48/116 (41%), Gaps = 23/116 (19%)
Query: 245 VSINIDARNVGTTNTRNTIVQIRGRECPDKVVITSGHLDSWDVGQGAMDDGGGAFISGIL 304
V ++I + N T N I +RG PD+ VI GH DSW G G G A + I+
Sbjct: 287 VKMHIHSTN-EVTRIYNVIGTLRGAVEPDRYVILGGHRDSWVFG-GIDPQSGAAVVHEIV 344
Query: 305 ---------------------WTAEEQGYVGAIAYVKKHQEELKNITVAMESDDGT 339
W AEE G +G+ + +++ L+ VA + D +
Sbjct: 345 RSFGTLKKEGWRPRRTILFASWDAEEFGLLGSTEWAEENSRLLQERGVAYINADSS 400
>pdb|2OOT|A Chain A, A High Resolution Structure Of Ligand-Free Human Glutamate
Carboxypeptidase Ii
pdb|2OR4|A Chain A, A High Resolution Crystal Structure Of Human Glutamate
Carboxypeptidase Ii In Complex With Quisqualic Acid
pdb|2PVV|A Chain A, Structure Of Human Glutamate Carboxypeptidase Ii (Gcpii)
In Complex With L-Serine-O-Sulfate
pdb|2PVW|A Chain A, A High Resolution Structure Of Human Glutamate
Carboxypeptidase Ii (Gcpii) In Complex With
2-(Phosphonomethyl)pentanedioic Acid (2-Pmpa)
pdb|3BHX|A Chain A, X-ray Structure Of Human Glutamate Carboxypeptidase Ii
(gcpii) In Complex With A Transition State Analog Of
Asp-glu
pdb|3BI0|A Chain A, X-Ray Structure Of Human Glutamate Carboxypeptidase Ii
(Gcpii) In Complex With A Transition State Analog Of
Glu-Glu
pdb|3BI1|A Chain A, X-Ray Structure Of Human Glutamate Carboxypeptidase Ii
(Gcpii) In Complex With A Transition State Analog Of
Methotrexate-Glu
pdb|3D7D|A Chain A, A High Resolution Crystal Structure Of Human Glutamate
Carboxypeptidase Ii (gcpii) In A Complex With Dcfbd, A
Urea-based Inhibitor
pdb|3D7F|A Chain A, A High Resolution Crystal Structure Of Human Glutamate
Carboxypeptidase Ii (Gcpii) In A Complex With Dcit, A
Urea-Based Inhibitor
pdb|3D7G|A Chain A, A High Resolution Crystal Structure Of Human Glutamate
Carboxypeptidase Ii (Gcpii) In A Complex With Dcmc, A
Urea-Based Inhibitor
pdb|3D7H|A Chain A, A High Resolution Crystal Structure Of Human Glutamate
Carboxypeptidase Ii (Gcpii) In A Complex With Dcibzl, A
Urea-Based Inhibitor
pdb|3IWW|A Chain A, Crystal Structure Of Human Glutamate Carboxypeptidase Ii
(Gcpii) In A Complex With Dbibzl, A Urea-Based Inhibitor
pdb|2XEI|A Chain A, Human Glutamate Carboxypeptidase Ii In Complex With
Antibody-Recruiting Molecule Arm-P2
pdb|3SJF|A Chain A, X-Ray Structure Of Human Glutamate Carboxypeptidase Ii In
Complex With A Urea-Based Inhibitor (A25)
Length = 709
Score = 37.7 bits (86), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 48/116 (41%), Gaps = 23/116 (19%)
Query: 245 VSINIDARNVGTTNTRNTIVQIRGRECPDKVVITSGHLDSWDVGQGAMDDGGGAFISGIL 304
V ++I + N T N I +RG PD+ VI GH DSW G G G A + I+
Sbjct: 301 VKMHIHSTN-EVTRIYNVIGTLRGAVEPDRYVILGGHRDSWVFG-GIDPQSGAAVVHEIV 358
Query: 305 ---------------------WTAEEQGYVGAIAYVKKHQEELKNITVAMESDDGT 339
W AEE G +G+ + +++ L+ VA + D +
Sbjct: 359 RSFGTLKKEGWRPRRTILFASWDAEEFGLLGSTEWAEENSRLLQERGVAYINADSS 414
>pdb|2XEF|A Chain A, Human Glutamate Carboxypeptidase Ii In Complex With
Antibody-Recruiting Molecule Arm-P8
pdb|2XEG|A Chain A, Human Glutamate Carboxypeptidase Ii In Complex With
Antibody-Recruiting Molecule Arm-P4
pdb|2XEJ|A Chain A, Human Glutamate Carboxypeptidase Ii In Complex With
Arm-M4, Urea-Based Inhibitor
Length = 709
Score = 37.4 bits (85), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 48/116 (41%), Gaps = 23/116 (19%)
Query: 245 VSINIDARNVGTTNTRNTIVQIRGRECPDKVVITSGHLDSWDVGQGAMDDGGGAFISGIL 304
V ++I + N T N I +RG PD+ VI GH DSW G G G A + I+
Sbjct: 301 VKMHIHSTN-EVTRIYNVIGTLRGAVEPDRYVILGGHRDSWVFG-GIDPQSGAAVVHEIV 358
Query: 305 ---------------------WTAEEQGYVGAIAYVKKHQEELKNITVAMESDDGT 339
W AEE G +G+ + +++ L+ VA + D +
Sbjct: 359 RSFGTLKKEGWRPRRTILFASWDAEEFGLLGSTEWAEENSRLLQERGVAYINADSS 414
>pdb|3RBU|A Chain A, N-Terminally Avitev-Tagged Human Glutamate
Carboxypeptidase Ii In Complex With 2-Pmpa
Length = 739
Score = 37.4 bits (85), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 48/116 (41%), Gaps = 23/116 (19%)
Query: 245 VSINIDARNVGTTNTRNTIVQIRGRECPDKVVITSGHLDSWDVGQGAMDDGGGAFISGIL 304
V ++I + N T N I +RG PD+ VI GH DSW G G G A + I+
Sbjct: 331 VKMHIHSTNE-VTRIYNVIGTLRGAVEPDRYVILGGHRDSWVFG-GIDPQSGAAVVHEIV 388
Query: 305 ---------------------WTAEEQGYVGAIAYVKKHQEELKNITVAMESDDGT 339
W AEE G +G+ + +++ L+ VA + D +
Sbjct: 389 RSFGTLKKEGWRPRRTILFASWDAEEFGLLGSTEWAEENSRLLQERGVAYINADSS 444
>pdb|3B3T|A Chain A, Crystal Structure Of The D118n Mutant Of The
Aminopeptidase From Vibrio Proteolyticus
Length = 291
Score = 37.0 bits (84), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 45/106 (42%), Gaps = 27/106 (25%)
Query: 258 NTRNTIVQIRGRECPDKVVITSGHLDS--------WDVGQGAMDDGGG------------ 297
N ++ ++ I G E PD+ ++ GHLDS V GA D+ G
Sbjct: 74 NQKSVVMTITGSEAPDEWIVIGGHLDSTIGSHTNEQSVAPGADDNASGIAAVTEVIRVLS 133
Query: 298 -------AFISGILWTAEEQGYVGAIAYVKKHQEELKNITVAMESD 336
I+ + + AEE G G+ +++ E KN+ A++ D
Sbjct: 134 ENNFQPKRSIAFMAYAAEEVGLRGSQDLANQYKSEGKNVVSALQLD 179
>pdb|2ANP|A Chain A, Functional Glutamate 151 To Histidine Mutant Of The
Aminopeptidase From Aeromonas Proteolytica
Length = 291
Score = 36.6 bits (83), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 44/106 (41%), Gaps = 27/106 (25%)
Query: 258 NTRNTIVQIRGRECPDKVVITSGHLDS--------WDVGQGAMDDGGG------------ 297
N ++ ++ I G E PD+ ++ GHLDS V GA DD G
Sbjct: 74 NQKSVVMTITGSEAPDEWIVIGGHLDSTIGSHTNEQSVAPGADDDASGIAAVTEVIRVLS 133
Query: 298 -------AFISGILWTAEEQGYVGAIAYVKKHQEELKNITVAMESD 336
I+ + + A E G G+ +++ E KN+ A++ D
Sbjct: 134 ENNFQPKRSIAFMAYAAHEVGLRGSQDLANQYKSEGKNVVSALQLD 179
>pdb|3FEC|A Chain A, Crystal Structure Of Human Glutamate Carboxypeptidase Iii
(GcpiiiNAALADASE II), PSEUDO-Unliganded
pdb|3FED|A Chain A, The High Resolution Structure Of Human Glutamate
Carboxypeptidase Iii (GcpiiiNAALADASE II) IN COMPLEX
WITH A TRANSITION STATE ANALOG OF Glu-Glu
pdb|3FEE|A Chain A, The High Resolution Structure Of Human Glutamate
Carboxypeptidase Iii (GcpiiiNAALADASE II) IN COMPLEX
WITH QUISQUALIC ACID
pdb|3FF3|A Chain A, The High Resolution Structure Of Human Glutamate
Carboxypeptidase Iii (GcpiiiNAALADASE II) IN COMPLEX
WITH L-Glutamate
Length = 707
Score = 35.4 bits (80), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 45/105 (42%), Gaps = 24/105 (22%)
Query: 257 TNTRNTIVQIRGRECPDKVVITSGHLDSWDVGQGAMDDGGG-AFISGIL----------- 304
T N + IRG PD+ VI GH DSW GA+D G A + I
Sbjct: 310 TRIYNVVGTIRGSVEPDRYVILGGHRDSWVF--GAIDPTSGVAVLQEIARSFGKLMSKGW 367
Query: 305 ----------WTAEEQGYVGAIAYVKKHQEELKNITVAMESDDGT 339
W AEE G +G+ + +++ + L+ ++A + D +
Sbjct: 368 RPRRTIIFASWDAEEFGLLGSTEWAEENVKILQERSIAYINSDSS 412
>pdb|3BXM|A Chain A, Structure Of An Inactive Mutant Of Human Glutamate
Carboxypeptidase Ii [gcpii(E424a)] In Complex With
N-Acetyl-Asp-Glu (Naag)
pdb|3SJE|A Chain A, X-Ray Structure Of Human Glutamate Carboxypeptidase Ii
(The E424a Inactive Mutant) In Complex With
N-Acetyl-Aspartyl-Aminononanoic Acid
pdb|3SJG|A Chain A, Human Glutamate Carboxypeptidase Ii (E424a Inactive Mutant
) In Complex With N-Acetyl-Aspartyl-Aminooctanoic Acid
pdb|3SJX|A Chain A, X-Ray Structure Of Human Glutamate Carboxypeptidase Ii
(The E424a Inactive Mutant) In Complex With
N-Acetyl-Aspartyl-Methionine
Length = 709
Score = 35.0 bits (79), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 47/116 (40%), Gaps = 23/116 (19%)
Query: 245 VSINIDARNVGTTNTRNTIVQIRGRECPDKVVITSGHLDSWDVGQGAMDDGGGAFISGIL 304
V ++I + N T N I +RG PD+ VI GH DSW G G G A + I+
Sbjct: 301 VKMHIHSTN-EVTRIYNVIGTLRGAVEPDRYVILGGHRDSWVFG-GIDPQSGAAVVHEIV 358
Query: 305 ---------------------WTAEEQGYVGAIAYVKKHQEELKNITVAMESDDGT 339
W A E G +G+ + +++ L+ VA + D +
Sbjct: 359 RSFGTLKKEGWRPRRTILFASWDAAEFGLLGSTEWAEENSRLLQERGVAYINADSS 414
>pdb|1ZSV|A Chain A, Crystal Structure Of Human Nadp-Dependent Leukotriene B4
12- Hydroxydehydrogenase
pdb|1ZSV|B Chain B, Crystal Structure Of Human Nadp-Dependent Leukotriene B4
12- Hydroxydehydrogenase
pdb|1ZSV|C Chain C, Crystal Structure Of Human Nadp-Dependent Leukotriene B4
12- Hydroxydehydrogenase
pdb|1ZSV|D Chain D, Crystal Structure Of Human Nadp-Dependent Leukotriene B4
12- Hydroxydehydrogenase
Length = 349
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 46/107 (42%), Gaps = 25/107 (23%)
Query: 99 VKESKDFGLEVWTENVTAPKWERH-------FEKVTLVKPWKSDIPVSTLGGSVGTPQGG 151
V ESK+ L T + +P W H EK L+ W IP+S G+VG P G
Sbjct: 91 VVESKNVALPKGTIVLASPGWTTHSISDGKDLEK--LLTEWPDTIPLSLALGTVGMP--G 146
Query: 152 ITA-----EVAGKIVVFNQDFVSYGETVKYRSKGASVASKYGAVATL 193
+TA E+ G V GETV + +V S G +A L
Sbjct: 147 LTAYFGLLEICG---------VKGGETVMVNAAAGAVGSVVGQIAKL 184
>pdb|2Y05|A Chain A, Crystal Structure Of Human Leukotriene B4
12-Hydroxydehydrogenase In Complex With Nadp And
Raloxifene
pdb|2Y05|B Chain B, Crystal Structure Of Human Leukotriene B4
12-Hydroxydehydrogenase In Complex With Nadp And
Raloxifene
pdb|2Y05|C Chain C, Crystal Structure Of Human Leukotriene B4
12-Hydroxydehydrogenase In Complex With Nadp And
Raloxifene
pdb|2Y05|D Chain D, Crystal Structure Of Human Leukotriene B4
12-Hydroxydehydrogenase In Complex With Nadp And
Raloxifene
Length = 328
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 46/107 (42%), Gaps = 25/107 (23%)
Query: 99 VKESKDFGLEVWTENVTAPKWERH-------FEKVTLVKPWKSDIPVSTLGGSVGTPQGG 151
V ESK+ L T + +P W H EK L+ W IP+S G+VG P G
Sbjct: 70 VVESKNVALPKGTIVLASPGWTTHSISDGKDLEK--LLTEWPDTIPLSLALGTVGMP--G 125
Query: 152 ITA-----EVAGKIVVFNQDFVSYGETVKYRSKGASVASKYGAVATL 193
+TA E+ G V GETV + +V S G +A L
Sbjct: 126 LTAYFGLLEICG---------VKGGETVMVNAAAGAVGSVVGQIAKL 163
>pdb|3K9T|A Chain A, Crystal Structure Of Putative Peptidase (np_348812.1) From
Clostridium Acetobutylicum At 2.37 A Resolution
Length = 435
Score = 32.0 bits (71), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 51/117 (43%), Gaps = 13/117 (11%)
Query: 313 VGAIAYVKKHQEELKNIT---VAMESDDGTFTPFGLSLKGSPEAACILNKVLRLFKPINA 369
+G+I ++ +++++LKNI VA D + + G E I+ KVL +
Sbjct: 229 IGSITWLSRNEDKLKNIKXGLVATCVGDAGIKNYKRTKFGDAEIDKIVEKVL---XHCGS 285
Query: 370 TRLVQSKYPVGSDIELFQEKNIPGVAL----LNDNAKYFWYHHTRADTMSVLDSDTL 422
V +P GSD F PG+ L L + F +HT AD + + D L
Sbjct: 286 EYYVADFFPWGSDERQFSS---PGINLSVGSLXRSCYGFDGYHTSADNLCYXNKDGL 339
>pdb|2HIH|A Chain A, Crystal Structure Of Staphylococcus Hyicus Lipase
pdb|2HIH|B Chain B, Crystal Structure Of Staphylococcus Hyicus Lipase
Length = 431
Score = 31.6 bits (70), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 37/170 (21%), Positives = 71/170 (41%), Gaps = 41/170 (24%)
Query: 95 IDFMVKESKDFGLEVWTENVTAPKWERHFEKVTLVKPWKSDIPVSTLGGSVGTPQGGITA 154
+D+ S+ +G E ++ + +E V +K WK PV +G S+G
Sbjct: 121 VDYGAAHSEKYGHE---------RYGKTYEGV--LKDWKPGHPVHFIGHSMG-------- 161
Query: 155 EVAGKIVVFNQDFVSYGET--VKYRSKGASVASKY--GAVATLIRSVTPYSLATPHTG-H 209
G+ + + ++ +G+ + Y+ + + S+ G ++ S+T ++ATPH G H
Sbjct: 162 ---GQTIRLLEHYLRFGDKAEIAYQQQHGGIISELFKGGQDNMVTSIT--TIATPHNGTH 216
Query: 210 QSYDAAVKPIPTACIAPEYAEMLYRM-----------YRRGDGPVVVSIN 248
S D P I +A+M + ++R DG + N
Sbjct: 217 ASDDIGNTPT-IRNILYSFAQMSSHLGTIDFGMDHWGFKRKDGESLTDYN 265
>pdb|3RHZ|A Chain A, Structure And Functional Analysis Of A New Subfamily Of
Glycosyltransferases Required For Glycosylation Of
Serine-Rich Streptococcal Adhesions
pdb|3RHZ|B Chain B, Structure And Functional Analysis Of A New Subfamily Of
Glycosyltransferases Required For Glycosylation Of
Serine-Rich Streptococcal Adhesions
Length = 339
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 31/72 (43%), Gaps = 19/72 (26%)
Query: 98 MVKESKDFGLEV--------WTENVTAP------KWERHF----EKVTLVKPWKSDIPVS 139
M+ + +DFG+ V W AP K E HF E+ + VK WK DIP+
Sbjct: 144 MIDKLRDFGMNVSKTVVQGMWDHPTQAPMFPAGLKREIHFPGNPERFSFVKEWKYDIPLK 203
Query: 140 TLG-GSVGTPQG 150
+V PQ
Sbjct: 204 VYTWQNVELPQN 215
>pdb|3QKW|A Chain A, Structure Of Streptococcus Parasangunini Gtf3
Glycosyltransferase
pdb|3QKW|B Chain B, Structure Of Streptococcus Parasangunini Gtf3
Glycosyltransferase
pdb|3QKW|C Chain C, Structure Of Streptococcus Parasangunini Gtf3
Glycosyltransferase
pdb|3QKW|D Chain D, Structure Of Streptococcus Parasangunini Gtf3
Glycosyltransferase
Length = 332
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 31/72 (43%), Gaps = 19/72 (26%)
Query: 98 MVKESKDFGLEV--------WTENVTAP------KWERHF----EKVTLVKPWKSDIPVS 139
M+ + +DFG+ V W AP K E HF E+ + VK WK DIP+
Sbjct: 136 MIDKLRDFGMNVSKTVVQGMWDHPTQAPMFPAGLKREIHFPGNPERFSFVKEWKYDIPLK 195
Query: 140 TLG-GSVGTPQG 150
+V PQ
Sbjct: 196 VYTWQNVELPQN 207
>pdb|1CP7|A Chain A, Aminopeptidase From Streptomyces Griseus
pdb|1QQ9|A Chain A, Streptomyces Griseus Aminopeptidase Complexed With
Methionine
pdb|1F2O|A Chain A, Crystal Structure Of The Streptomyces Griseus
Aminopeptidase Complexed With L-Leucine
pdb|1F2P|A Chain A, Crystal Structure Of The Streptomyces Griseus
Aminopeptidase Complexed With L-Phenylalanine
pdb|1TF8|A Chain A, Streptomyces Griseus Aminopeptidase Complexed With L-
Tryptophan
pdb|1TF9|A Chain A, Streptomyces Griseus Aminopeptidase Complexed With
P-Iodo-L- Phenylalanine
pdb|1TKF|A Chain A, Streptomyces Griseus Aminopeptidase Complexed With D-
Tryptophan
pdb|1TKH|A Chain A, Streptomyces Griseus Aminopeptidase Complexed With D-
Phenylalanine
pdb|1TKJ|A Chain A, Streptomyces Griseus Aminopeptidase Complexed With D-
Methionine
pdb|1XBU|A Chain A, Streptomyces Griseus Aminopeptidase Complexed With
P-Iodo-D- Phenylalanine
Length = 284
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 28/69 (40%), Gaps = 19/69 (27%)
Query: 272 PDKVVITSGHLDSWDVGQGAMDDGGGA-------------------FISGILWTAEEQGY 312
P+KV++ HLDS G G D+G G+ + W AEE G
Sbjct: 76 PNKVLMAGAHLDSVSSGAGINDNGSGSAAVLETALAVSRAGYQPDKHLRFAWWGAEELGL 135
Query: 313 VGAIAYVKK 321
+G+ YV
Sbjct: 136 IGSKFYVNN 144
>pdb|1XJO|A Chain A, Structure Of Aminopeptidase
Length = 284
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 28/69 (40%), Gaps = 19/69 (27%)
Query: 272 PDKVVITSGHLDSWDVGQGAMDDGGGA-------------------FISGILWTAEEQGY 312
P+KV++ HLDS G G D+G G+ + W AEE G
Sbjct: 76 PNKVLMAGAHLDSVSSGAGINDNGSGSAAVLETALAVSRAGYQPDKHLRFAWWGAEELGL 135
Query: 313 VGAIAYVKK 321
+G+ YV
Sbjct: 136 IGSKFYVNN 144
>pdb|1V3T|A Chain A, Crystal Structure Of Leukotriene B4 12-
Hydroxydehydrogenase15-Oxo-Prostaglandin 13-Reductase
pdb|1V3T|B Chain B, Crystal Structure Of Leukotriene B4 12-
Hydroxydehydrogenase15-Oxo-Prostaglandin 13-Reductase
pdb|1V3U|A Chain A, Crystal Structure Of Leukotriene B4 12-
Hydroxydehydrogenase15-Oxo-Prostaglandin 13-Reductase In
Apo Form
pdb|1V3U|B Chain B, Crystal Structure Of Leukotriene B4 12-
Hydroxydehydrogenase15-Oxo-Prostaglandin 13-Reductase In
Apo Form
pdb|1V3V|A Chain A, Crystal Structure Of Leukotriene B4 12-
Hydroxydehydrogenase15-Oxo-Prostaglandin 13-Reductase
Complexed With Nadp And 15-Oxo-Pge2
pdb|1V3V|B Chain B, Crystal Structure Of Leukotriene B4 12-
Hydroxydehydrogenase15-Oxo-Prostaglandin 13-Reductase
Complexed With Nadp And 15-Oxo-Pge2
pdb|2DM6|A Chain A, Crystal Structure Of Anti-Configuration Of Indomethacin
And Leukotriene B4 12-Hydroxydehydrogenase15-Oxo-
Prostaglandin 13-Reductase Complex
pdb|2DM6|B Chain B, Crystal Structure Of Anti-Configuration Of Indomethacin
And Leukotriene B4 12-Hydroxydehydrogenase15-Oxo-
Prostaglandin 13-Reductase Complex
Length = 333
Score = 28.9 bits (63), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 44/107 (41%), Gaps = 25/107 (23%)
Query: 99 VKESKDFGLEVWTENVTAPKWERHF-------EKVTLVKPWKSDIPVSTLGGSVGTPQGG 151
V ESK+ + + W HF EK L+ W +P+S G++G P G
Sbjct: 75 VVESKNSAFPAGSIVLAQSGWTTHFISDGKGLEK--LLTEWPDKLPLSLALGTIGMP--G 130
Query: 152 ITA-----EVAGKIVVFNQDFVSYGETVKYRSKGASVASKYGAVATL 193
+TA EV G V GETV + +V S G +A L
Sbjct: 131 LTAYFGLLEVCG---------VKGGETVLVSAAAGAVGSVVGQIAKL 168
>pdb|1ZOW|A Chain A, Crystal Structure Of S. Aureus Fabh, Beta-Ketoacyl Carrier
Protein Synthase Iii
pdb|1ZOW|B Chain B, Crystal Structure Of S. Aureus Fabh, Beta-Ketoacyl Carrier
Protein Synthase Iii
pdb|1ZOW|C Chain C, Crystal Structure Of S. Aureus Fabh, Beta-Ketoacyl Carrier
Protein Synthase Iii
pdb|1ZOW|D Chain D, Crystal Structure Of S. Aureus Fabh, Beta-Ketoacyl Carrier
Protein Synthase Iii
pdb|3IL7|A Chain A, Crystal Structure Of S. Aureus Fabh
pdb|3IL7|B Chain B, Crystal Structure Of S. Aureus Fabh
Length = 313
Score = 28.9 bits (63), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 24/50 (48%)
Query: 207 TGHQSYDAAVKPIPTACIAPEYAEMLYRMYRRGDGPVVVSINIDARNVGT 256
T +Y+A+VK I A I PE +M+ GD P N+ +GT
Sbjct: 51 TSDLAYEASVKAIADAGIQPEDIDMIIVATATGDMPFPTVANMLQERLGT 100
>pdb|1NJM|T Chain T, The Crystal Structure Of The 50s Large Ribosomal Subunit
From Deinococcus Radiodurans Complexed With A Trna
Acceptor Stem Mimic (Asm) And The Antibiotic Sparsomycin
pdb|1NJP|T Chain T, The Crystal Structure Of The 50s Large Ribosomal Subunit
From Deinococcus Radiodurans Complexed With A Trna
Acceptor Stem Mimic (Asm)
pdb|1NWX|T Chain T, Complex Of The Large Ribosomal Subunit From Deinococcus
Radiodurans With Abt-773
pdb|1NWY|T Chain T, Complex Of The Large Ribosomal Subunit From Deinococcus
Radiodurans With Azithromycin
pdb|1XBP|T Chain T, Inhibition Of Peptide Bond Formation By Pleuromutilins:
The Structure Of The 50s Ribosomal Subunit From
Deinococcus Radiodurans In Complex With Tiamulin
pdb|2ZJP|S Chain S, Thiopeptide Antibiotic Nosiheptide Bound To The Large
Ribosomal Subunit Of Deinococcus Radiodurans
pdb|2ZJQ|S Chain S, Interaction Of L7 With L11 Induced By Microccocin Binding
To The Deinococcus Radiodurans 50s Subunit
pdb|2ZJR|S Chain S, Refined Native Structure Of The Large Ribosomal Subunit
(50s) From Deinococcus Radiodurans
pdb|3CF5|S Chain S, Thiopeptide Antibiotic Thiostrepton Bound To The Large
Ribosomal Subunit Of Deinococcus Radiodurans
pdb|3DLL|S Chain S, The Oxazolidinone Antibiotics Perturb The Ribosomal
Peptidyl-Transferase Center And Effect Trna Positioning
pdb|3PIO|S Chain S, Crystal Structure Of The Synergistic Antibiotic Pair
Lankamycin And Lankacidin In Complex With The Large
Ribosomal Subunit
pdb|3PIP|S Chain S, Crystal Structure Of The Synergistic Antibiotic Pair
Lankamycin And Lankacidin In Complex With The Large
Ribosomal Subunit
Length = 237
Score = 28.5 bits (62), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 24/49 (48%), Gaps = 5/49 (10%)
Query: 123 FEKVTLVKPWKSDIPVSTLGGSVGTPQGGITAEVAGKIVVFNQDFVSYG 171
F VT +P + +PV T G S G QGG+ IVV N V+ G
Sbjct: 83 FYMVTYGEPVEVSVPVHTTGRSQGEVQGGLV-----DIVVHNLQIVAPG 126
>pdb|1NKW|T Chain T, Crystal Structure Of The Large Ribosomal Subunit From
Deinococcus Radiodurans
pdb|1SM1|T Chain T, Complex Of The Large Ribosomal Subunit From Deinococcus
Radiodurans With Quinupristin And Dalfopristin
pdb|1YL3|V Chain V, Crystal Structure Of 70s Ribosome With Thrs Operator And
Trnas. Large Subunit. The Coordinates For The Small
Subunit Are In The Pdb Entry 1yl4.
pdb|2B66|Z Chain Z, 50s Ribosomal Subunit From A Crystal Structure Of Release
Factor Rf1, Trnas And Mrna Bound To The Ribosome. This
File Contains The 50s Subunit From A Crystal Structure
Of Release Factor Rf1, Trnas And Mrna Bound To The
Ribosome And Is Described In Remark 400
pdb|2B9N|Z Chain Z, 50s Ribosomal Subunit From A Crystal Structure Of Release
Factor Rf2, Trnas And Mrna Bound To The Ribosome. This
File Contains The 50s Subunit From A Crystal Structure
Of Release Factor Rf1, Trnas And Mrna Bound To The
Ribosome And Is Described In Remark 400.
pdb|2B9P|Z Chain Z, 50s Ribosomal Subunit From A Crystal Structure Of The
Ribosome In Complex With Trnas And Mrna With A Stop
Codon In The A-Site. This File Contains The 50s Subunit
From A Crystal Structure Of The Ribosome In Complex With
Trnas And Mrna With A Stop Codon In The A-Site And Is
Described In Remark 400
Length = 253
Score = 28.1 bits (61), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 24/49 (48%), Gaps = 5/49 (10%)
Query: 123 FEKVTLVKPWKSDIPVSTLGGSVGTPQGGITAEVAGKIVVFNQDFVSYG 171
F VT +P + +PV T G S G QGG+ IVV N V+ G
Sbjct: 99 FYMVTYGEPVEVSVPVHTTGRSQGEVQGGLV-----DIVVHNLQIVAPG 142
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.134 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,882,886
Number of Sequences: 62578
Number of extensions: 602499
Number of successful extensions: 1458
Number of sequences better than 100.0: 31
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 1418
Number of HSP's gapped (non-prelim): 37
length of query: 446
length of database: 14,973,337
effective HSP length: 102
effective length of query: 344
effective length of database: 8,590,381
effective search space: 2955091064
effective search space used: 2955091064
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)