Query psy9208
Match_columns 446
No_of_seqs 264 out of 1936
Neff 7.7
Searched_HMMs 46136
Date Fri Aug 16 21:39:48 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9208.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/9208hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2195|consensus 100.0 4E-34 8.6E-39 304.6 26.5 359 72-446 60-552 (702)
2 COG4882 Predicted aminopeptida 100.0 1.4E-27 3.1E-32 229.5 19.4 325 79-444 10-365 (486)
3 PF04389 Peptidase_M28: Peptid 99.9 2.1E-27 4.6E-32 217.4 10.4 148 274-423 1-179 (179)
4 PRK10199 alkaline phosphatase 99.9 1.4E-25 3.1E-30 222.0 23.9 179 257-440 95-345 (346)
5 COG2234 Iap Predicted aminopep 99.8 7.1E-20 1.5E-24 190.4 13.4 236 181-426 120-383 (435)
6 KOG2194|consensus 99.7 9.9E-17 2.1E-21 171.6 9.0 178 258-439 127-330 (834)
7 cd04815 PA_M28_2 PA_M28_2: Pro 99.7 5.5E-16 1.2E-20 135.2 11.6 109 137-246 2-133 (134)
8 KOG3946|consensus 99.4 6.6E-13 1.4E-17 125.0 10.5 216 216-435 62-334 (338)
9 PF09940 DUF2172: Domain of un 99.3 5.4E-11 1.2E-15 117.5 15.4 198 219-437 86-306 (386)
10 cd04819 PA_2 PA_2: Protease-as 99.3 5.6E-11 1.2E-15 102.8 12.6 83 155-245 42-125 (127)
11 cd04816 PA_SaNapH_like PA_SaNa 99.3 4.5E-11 9.7E-16 102.7 10.5 90 145-245 30-120 (122)
12 cd02130 PA_ScAPY_like PA_ScAPY 99.2 1.3E-10 2.9E-15 99.7 10.7 89 146-246 33-121 (122)
13 PF05450 Nicastrin: Nicastrin; 99.1 4.5E-10 9.7E-15 106.8 12.2 145 274-419 1-200 (234)
14 cd02126 PA_EDEM3_like PA_EDEM3 99.0 7E-10 1.5E-14 95.7 8.7 93 146-246 29-125 (126)
15 cd02129 PA_hSPPL_like PA_hSPPL 99.0 1.6E-09 3.4E-14 92.1 9.9 93 136-239 22-115 (120)
16 cd02127 PA_hPAP21_like PA_hPAP 99.0 2.4E-09 5.2E-14 91.2 9.4 91 146-245 23-114 (118)
17 cd02132 PA_GO-like PA_GO-like: 99.0 2.3E-09 5E-14 94.1 8.9 82 155-246 57-138 (139)
18 cd04817 PA_VapT_like PA_VapT_l 99.0 2.1E-09 4.5E-14 93.8 7.9 79 155-239 54-134 (139)
19 cd02122 PA_GRAIL_like PA _GRAI 98.9 7.1E-09 1.5E-13 90.7 9.6 81 154-246 57-137 (138)
20 cd02128 PA_TfR PA_TfR: Proteas 98.9 8.2E-09 1.8E-13 93.8 9.8 78 155-240 53-156 (183)
21 cd02125 PA_VSR PA_VSR: Proteas 98.8 1.8E-08 4E-13 86.9 8.8 82 156-246 41-126 (127)
22 cd02124 PA_PoS1_like PA_PoS1_l 98.8 5.2E-08 1.1E-12 84.3 10.0 76 155-246 53-128 (129)
23 cd00538 PA PA: Protease-associ 98.8 4.1E-08 9E-13 84.1 9.3 82 155-246 44-125 (126)
24 cd04818 PA_subtilisin_1 PA_sub 98.7 5E-08 1.1E-12 83.2 9.3 89 146-246 29-117 (118)
25 cd02131 PA_hNAALADL2_like PA_h 98.7 4.9E-08 1.1E-12 85.3 8.5 75 155-236 38-137 (153)
26 cd02121 PA_GCPII_like PA_GCPII 98.7 9.9E-08 2.1E-12 89.6 8.9 76 155-237 69-188 (220)
27 PF02225 PA: PA domain; Inter 98.6 8.7E-08 1.9E-12 78.9 7.5 71 155-236 31-101 (101)
28 cd04813 PA_1 PA_1: Protease-as 98.5 2.4E-07 5.2E-12 78.8 6.9 74 154-236 36-109 (117)
29 KOG2526|consensus 98.5 9.5E-07 2.1E-11 88.2 12.0 181 255-435 189-416 (555)
30 cd02123 PA_C_RZF_like PA_C-RZF 98.5 3.3E-07 7.1E-12 81.8 7.5 78 154-240 64-141 (153)
31 COG4310 Uncharacterized protei 98.5 9.1E-07 2E-11 85.1 10.5 197 221-438 137-355 (435)
32 cd02133 PA_C5a_like PA_C5a_lik 98.4 1.4E-06 3E-11 76.9 8.8 83 150-249 39-122 (143)
33 cd02120 PA_subtilisin_like PA_ 98.2 6.4E-06 1.4E-10 70.7 8.7 81 146-241 39-121 (126)
34 TIGR03176 AllC allantoate amid 97.9 1E-05 2.2E-10 83.7 4.5 60 260-320 56-139 (406)
35 PF01546 Peptidase_M20: Peptid 97.8 3.6E-05 7.8E-10 70.2 6.8 145 277-433 1-187 (189)
36 TIGR01879 hydantase amidase, h 97.8 3.9E-05 8.5E-10 79.2 6.5 60 260-321 54-138 (401)
37 cd04814 PA_M28_1 PA_M28_1: Pro 97.6 0.00033 7.2E-09 61.4 8.9 95 137-235 23-134 (142)
38 cd04822 PA_M28_1_3 PA_M28_1_3: 97.6 0.00022 4.8E-09 63.2 7.8 78 155-238 45-134 (151)
39 cd04821 PA_M28_1_2 PA_M28_1_2: 97.5 0.00063 1.4E-08 60.8 9.7 98 137-235 25-150 (157)
40 COG1363 FrvX Cellulase M and r 97.5 0.0011 2.3E-08 66.9 12.0 122 302-440 206-350 (355)
41 PRK12890 allantoate amidohydro 97.4 9.4E-05 2E-09 76.6 3.7 61 260-321 61-145 (414)
42 PRK07338 hypothetical protein; 97.4 0.0022 4.8E-08 66.1 13.5 54 380-440 347-401 (402)
43 PRK13799 unknown domain/N-carb 97.4 0.0001 2.2E-09 79.8 3.5 59 260-319 238-320 (591)
44 PRK13590 putative bifunctional 97.4 0.00012 2.5E-09 79.5 3.9 59 259-319 237-320 (591)
45 PRK06133 glutamate carboxypept 97.4 0.00063 1.4E-08 70.5 9.0 89 227-323 61-185 (410)
46 PF05343 Peptidase_M42: M42 gl 97.3 0.0012 2.7E-08 65.1 9.9 108 302-426 160-290 (292)
47 cd04820 PA_M28_1_1 PA_M28_1_1: 97.3 0.00054 1.2E-08 59.8 6.3 50 149-199 40-96 (137)
48 PRK09133 hypothetical protein; 97.3 0.00034 7.3E-09 73.8 6.0 75 258-334 87-201 (472)
49 TIGR01910 DapE-ArgE acetylorni 97.2 0.00069 1.5E-08 69.1 6.7 61 260-321 52-152 (375)
50 PRK13983 diaminopimelate amino 97.1 0.00066 1.4E-08 69.7 5.9 63 259-322 63-166 (400)
51 PRK12891 allantoate amidohydro 97.1 0.00039 8.4E-09 72.1 4.2 59 260-319 63-145 (414)
52 PRK07906 hypothetical protein; 97.1 0.0014 3.1E-08 68.1 8.1 66 258-323 50-155 (426)
53 TIGR01883 PepT-like peptidase 97.0 0.0014 3E-08 66.5 6.4 62 259-321 49-146 (361)
54 KOG2442|consensus 97.0 0.0024 5.3E-08 65.3 7.9 85 155-249 93-177 (541)
55 PRK12892 allantoate amidohydro 96.8 0.00096 2.1E-08 69.0 3.8 60 260-321 62-145 (412)
56 PRK12893 allantoate amidohydro 96.8 0.00099 2.1E-08 68.9 3.9 62 260-322 63-148 (412)
57 PRK08596 acetylornithine deace 96.8 0.0035 7.5E-08 65.2 7.7 88 228-323 38-167 (421)
58 PRK09290 allantoate amidohydro 96.7 0.0012 2.6E-08 68.5 3.6 62 260-322 60-145 (413)
59 PRK13381 peptidase T; Provisio 96.7 0.0017 3.7E-08 67.0 4.3 52 380-438 353-404 (404)
60 PRK08262 hypothetical protein; 96.6 0.0037 8E-08 66.2 6.3 63 260-323 98-203 (486)
61 TIGR03107 glu_aminopep glutamy 96.6 0.0068 1.5E-07 61.4 7.9 130 291-437 176-342 (350)
62 KOG2657|consensus 96.5 0.01 2.2E-07 61.3 8.6 179 257-438 155-390 (596)
63 TIGR01893 aa-his-dipept aminoa 96.4 0.0027 5.8E-08 67.2 4.0 62 260-321 47-152 (477)
64 PRK09961 exoaminopeptidase; Pr 96.4 0.013 2.8E-07 59.3 8.5 129 291-436 164-333 (344)
65 TIGR01892 AcOrn-deacetyl acety 96.3 0.011 2.3E-07 60.0 7.7 91 226-323 18-145 (364)
66 PRK09104 hypothetical protein; 96.3 0.005 1.1E-07 64.9 5.1 65 259-323 68-177 (464)
67 PRK09864 putative peptidase; P 96.3 0.017 3.7E-07 58.5 8.6 118 302-436 199-341 (356)
68 PRK07522 acetylornithine deace 96.3 0.016 3.4E-07 59.2 8.5 89 227-323 26-151 (385)
69 PRK07907 hypothetical protein; 96.2 0.0074 1.6E-07 63.2 6.0 64 259-323 70-170 (449)
70 PRK07473 carboxypeptidase; Pro 96.1 0.0067 1.5E-07 62.1 4.8 63 260-322 62-160 (376)
71 PRK08588 succinyl-diaminopimel 96.0 0.0063 1.4E-07 62.1 4.2 60 259-321 48-147 (377)
72 PRK06915 acetylornithine deace 96.0 0.0067 1.5E-07 62.9 4.1 62 259-321 80-181 (422)
73 PRK08554 peptidase; Reviewed 95.9 0.011 2.3E-07 61.9 5.5 52 379-437 386-437 (438)
74 PRK06446 hypothetical protein; 95.9 0.012 2.6E-07 61.5 5.5 63 259-323 50-151 (436)
75 PRK13013 succinyl-diaminopimel 95.8 0.01 2.2E-07 61.6 4.8 61 259-320 71-169 (427)
76 PRK08201 hypothetical protein; 95.7 0.016 3.4E-07 60.9 5.6 64 259-323 66-169 (456)
77 PRK06837 acetylornithine deace 95.6 0.012 2.6E-07 61.3 4.2 64 258-321 82-185 (427)
78 PRK13007 succinyl-diaminopimel 95.5 0.015 3.2E-07 58.6 4.5 62 260-323 50-142 (352)
79 PRK15026 aminoacyl-histidine d 95.4 0.039 8.5E-07 58.5 7.2 74 260-337 53-170 (485)
80 PRK13009 succinyl-diaminopimel 95.4 0.024 5.2E-07 57.7 5.5 50 380-436 324-373 (375)
81 PRK07079 hypothetical protein; 95.2 0.025 5.5E-07 59.6 5.2 64 259-323 72-177 (469)
82 TIGR01886 dipeptidase dipeptid 95.1 0.015 3.2E-07 61.4 3.2 62 261-323 67-166 (466)
83 TIGR01880 Ac-peptdase-euk N-ac 95.1 0.032 6.9E-07 57.5 5.6 55 380-438 345-399 (400)
84 PRK07318 dipeptidase PepV; Rev 95.1 0.016 3.5E-07 61.1 3.3 61 261-322 68-166 (466)
85 PRK05469 peptidase T; Provisio 95.1 0.023 5E-07 58.7 4.3 54 379-439 354-407 (408)
86 PRK05111 acetylornithine deace 94.9 0.064 1.4E-06 54.8 7.0 89 226-322 32-157 (383)
87 TIGR01882 peptidase-T peptidas 94.8 0.12 2.7E-06 53.5 9.0 51 380-437 357-407 (410)
88 COG0624 ArgE Acetylornithine d 94.8 0.041 9E-07 56.8 5.2 65 259-324 62-166 (409)
89 TIGR01902 dapE-lys-deAc N-acet 94.6 0.036 7.8E-07 55.7 4.1 61 260-323 40-127 (336)
90 PRK00466 acetyl-lysine deacety 94.4 0.025 5.3E-07 57.1 2.4 48 275-322 62-136 (346)
91 PRK08652 acetylornithine deace 94.3 0.07 1.5E-06 53.5 5.6 83 227-323 23-134 (347)
92 PRK08651 succinyl-diaminopimel 94.2 0.044 9.6E-07 56.2 4.0 54 380-439 340-393 (394)
93 COG4187 RocB Arginine degradat 94.2 0.085 1.8E-06 53.9 5.7 79 258-337 64-206 (553)
94 TIGR01891 amidohydrolases amid 93.7 0.079 1.7E-06 53.8 4.7 62 259-322 43-137 (363)
95 PRK06156 hypothetical protein; 93.7 0.078 1.7E-06 56.8 4.9 58 264-323 102-203 (520)
96 PRK04443 acetyl-lysine deacety 93.7 0.064 1.4E-06 54.2 4.0 82 227-322 27-136 (348)
97 KOG2275|consensus 93.1 0.14 3.1E-06 52.0 5.2 79 258-338 73-192 (420)
98 TIGR01246 dapE_proteo succinyl 93.0 0.15 3.3E-06 51.7 5.4 49 381-436 322-370 (370)
99 PRK13004 peptidase; Reviewed 92.9 0.11 2.4E-06 53.5 4.3 52 381-438 345-397 (399)
100 KOG3946|consensus 92.9 0.2 4.4E-06 48.3 5.6 48 66-116 49-96 (338)
101 PRK08737 acetylornithine deace 92.4 0.12 2.7E-06 52.6 3.7 83 226-322 30-144 (364)
102 PRK07205 hypothetical protein; 92.2 0.16 3.4E-06 53.2 4.4 59 260-321 65-163 (444)
103 KOG4628|consensus 92.1 0.21 4.5E-06 50.1 4.8 72 156-238 78-149 (348)
104 TIGR03106 trio_M42_hydro hydro 91.8 0.31 6.8E-06 49.3 5.9 114 302-433 211-339 (343)
105 TIGR01887 dipeptidaselike dipe 91.5 0.18 3.8E-06 53.0 3.8 50 273-322 67-154 (447)
106 TIGR01900 dapE-gram_pos succin 90.4 0.25 5.5E-06 50.4 3.6 61 261-323 42-156 (373)
107 KOG3920|consensus 89.7 0.23 4.9E-06 43.7 2.2 76 156-238 86-163 (193)
108 PRK06133 glutamate carboxypept 88.2 2.1 4.6E-05 44.2 8.6 56 379-439 354-409 (410)
109 PLN02693 IAA-amino acid hydrol 85.3 0.84 1.8E-05 47.8 3.8 55 380-437 364-421 (437)
110 PLN02280 IAA-amino acid hydrol 85.2 0.81 1.8E-05 48.5 3.6 53 380-436 417-473 (478)
111 TIGR03526 selenium_YgeY putati 84.5 1.1 2.4E-05 45.9 4.3 51 381-437 343-394 (395)
112 TIGR03320 ygeY M20/DapE family 83.4 1.4 2.9E-05 45.3 4.3 51 381-437 343-394 (395)
113 PF04114 Gaa1: Gaa1-like, GPI 80.3 18 0.00039 38.7 11.4 165 258-443 2-232 (504)
114 PRK02256 putative aminopeptida 79.6 3.7 8E-05 43.2 5.9 67 350-426 381-455 (462)
115 PRK13381 peptidase T; Provisio 78.1 5.8 0.00013 40.8 6.9 29 83-111 22-51 (404)
116 TIGR03176 AllC allantoate amid 77.2 3.3 7.2E-05 42.8 4.8 79 350-438 326-404 (406)
117 PRK13590 putative bifunctional 76.7 6.1 0.00013 43.1 6.8 47 67-114 180-237 (591)
118 PTZ00371 aspartyl aminopeptida 74.7 10 0.00022 40.1 7.6 74 350-430 374-452 (465)
119 PRK08651 succinyl-diaminopimel 72.9 8.1 0.00018 39.4 6.3 45 69-114 7-51 (394)
120 PRK05469 peptidase T; Provisio 72.0 12 0.00026 38.5 7.4 26 89-114 29-55 (408)
121 PRK12893 allantoate amidohydro 71.7 6.4 0.00014 40.5 5.3 31 83-113 31-61 (412)
122 PRK12890 allantoate amidohydro 70.0 8.3 0.00018 39.8 5.6 80 350-439 334-413 (414)
123 PRK12891 allantoate amidohydro 69.5 17 0.00037 37.5 7.9 80 350-439 332-411 (414)
124 PRK13799 unknown domain/N-carb 68.9 9.3 0.0002 41.7 5.9 82 348-438 509-590 (591)
125 PRK09290 allantoate amidohydro 67.9 9.9 0.00021 39.2 5.7 44 69-113 8-58 (413)
126 PRK08554 peptidase; Reviewed 66.3 12 0.00027 39.0 6.1 26 88-113 23-48 (438)
127 PRK02813 putative aminopeptida 64.1 25 0.00054 36.8 7.7 121 300-427 255-422 (428)
128 TIGR01882 peptidase-T peptidas 63.0 16 0.00035 37.7 6.1 32 82-113 23-55 (410)
129 TIGR03106 trio_M42_hydro hydro 62.5 7.5 0.00016 39.3 3.4 37 258-295 44-81 (343)
130 TIGR01880 Ac-peptdase-euk N-ac 62.4 21 0.00046 36.5 6.9 42 70-113 11-52 (400)
131 PRK08652 acetylornithine deace 60.7 39 0.00084 33.6 8.3 78 350-437 268-345 (347)
132 KOG2194|consensus 59.2 22 0.00047 40.0 6.4 36 69-105 58-94 (834)
133 COG0527 LysC Aspartokinases [A 59.1 40 0.00087 35.5 8.2 121 88-235 116-252 (447)
134 TIGR01883 PepT-like peptidase 58.9 19 0.00042 36.1 5.8 72 351-433 289-360 (361)
135 PRK13009 succinyl-diaminopimel 58.7 44 0.00095 33.7 8.4 40 70-113 4-43 (375)
136 PRK12892 allantoate amidohydro 57.4 21 0.00044 36.7 5.8 78 351-438 334-411 (412)
137 PRK07473 carboxypeptidase; Pro 55.8 29 0.00063 35.4 6.5 74 352-436 301-375 (376)
138 PRK06915 acetylornithine deace 55.5 49 0.0011 34.1 8.2 81 350-439 339-420 (422)
139 TIGR01246 dapE_proteo succinyl 54.6 47 0.001 33.5 7.8 30 85-114 12-41 (370)
140 PRK09961 exoaminopeptidase; Pr 54.2 10 0.00022 38.5 2.7 36 258-295 41-77 (344)
141 TIGR03107 glu_aminopep glutamy 52.4 11 0.00024 38.3 2.6 38 258-295 39-77 (350)
142 PRK09133 hypothetical protein; 52.3 45 0.00098 35.0 7.4 56 379-438 413-470 (472)
143 PRK08596 acetylornithine deace 51.3 55 0.0012 33.8 7.8 56 379-440 364-419 (421)
144 COG2195 PepD Di- and tripeptid 51.0 1.1E+02 0.0024 31.8 9.8 82 346-437 331-412 (414)
145 TIGR01879 hydantase amidase, h 50.9 49 0.0011 34.0 7.3 77 350-436 325-401 (401)
146 cd04245 AAK_AKiii-YclM-BS AAK_ 50.2 49 0.0011 32.6 6.8 125 88-234 117-251 (288)
147 PRK13983 diaminopimelate amino 47.4 62 0.0014 32.8 7.4 49 379-434 350-398 (400)
148 TIGR01902 dapE-lys-deAc N-acet 46.9 41 0.0009 33.4 5.9 54 379-438 281-335 (336)
149 KOG2276|consensus 43.3 39 0.00085 34.8 4.9 71 266-336 84-195 (473)
150 PF07438 DUF1514: Protein of u 43.1 69 0.0015 24.0 4.8 17 12-28 2-18 (66)
151 cd04258 AAK_AKiii-LysC-EC AAK_ 41.3 1.7E+02 0.0036 29.0 9.0 129 84-234 114-255 (292)
152 PRK08588 succinyl-diaminopimel 40.7 1.3E+02 0.0028 30.3 8.5 79 350-437 296-376 (377)
153 PRK00466 acetyl-lysine deacety 38.7 98 0.0021 30.9 7.1 55 379-439 291-345 (346)
154 PRK07522 acetylornithine deace 37.7 58 0.0013 32.9 5.4 53 379-437 332-384 (385)
155 PRK05111 acetylornithine deace 36.5 65 0.0014 32.6 5.5 54 379-438 329-382 (383)
156 COG1473 AbgB Metal-dependent a 35.1 34 0.00075 35.3 3.2 55 380-437 332-389 (392)
157 KOG0538|consensus 34.4 1.1E+02 0.0023 30.5 6.1 33 156-195 275-307 (363)
158 cd04257 AAK_AK-HSDH AAK_AK-HSD 33.9 1.2E+02 0.0026 30.0 6.7 123 87-233 121-256 (294)
159 PF07172 GRP: Glycine rich pro 33.7 20 0.00043 29.2 0.9 20 7-28 3-22 (95)
160 PRK07338 hypothetical protein; 33.3 1.3E+02 0.0029 30.6 7.2 43 69-113 18-61 (402)
161 cd04243 AAK_AK-HSDH-like AAK_A 32.6 1.1E+02 0.0023 30.3 6.1 126 87-234 120-256 (293)
162 PRK06446 hypothetical protein; 32.5 2.7E+02 0.0059 28.8 9.5 53 381-438 380-435 (436)
163 PRK06837 acetylornithine deace 32.0 1.5E+02 0.0032 30.6 7.4 53 379-438 370-423 (427)
164 PRK09034 aspartate kinase; Rev 31.6 80 0.0017 33.2 5.3 123 88-234 117-251 (454)
165 PRK04443 acetyl-lysine deacety 30.6 1.4E+02 0.003 29.9 6.7 52 379-436 296-348 (348)
166 PRK10628 LigB family dioxygena 29.9 1.8E+02 0.0039 28.0 6.9 47 346-398 65-118 (246)
167 TIGR01910 DapE-ArgE acetylorni 29.3 82 0.0018 31.8 4.8 28 87-114 16-43 (375)
168 PRK13007 succinyl-diaminopimel 29.2 85 0.0018 31.3 4.9 49 379-433 303-351 (352)
169 PRK07079 hypothetical protein; 29.1 3.6E+02 0.0078 28.2 9.8 56 381-441 403-459 (469)
170 TIGR01893 aa-his-dipept aminoa 28.0 94 0.002 32.8 5.1 50 379-435 424-475 (477)
171 PRK13004 peptidase; Reviewed 27.1 1.7E+02 0.0037 29.8 6.8 36 69-108 16-51 (399)
172 COG0624 ArgE Acetylornithine d 26.2 3.6E+02 0.0077 27.5 9.0 53 380-438 356-408 (409)
173 TIGR01892 AcOrn-deacetyl acety 26.0 80 0.0017 31.5 4.1 48 379-432 316-363 (364)
174 TIGR03526 selenium_YgeY putati 25.5 1.8E+02 0.0038 29.7 6.5 38 70-111 15-53 (395)
175 PLN02693 IAA-amino acid hydrol 25.0 2.9E+02 0.0063 28.8 8.1 23 88-110 63-85 (437)
176 PRK09864 putative peptidase; P 24.0 58 0.0013 33.2 2.5 34 259-295 42-76 (356)
177 PRK08262 hypothetical protein; 23.6 90 0.0019 32.9 4.0 54 379-437 427-484 (486)
178 PF09882 DUF2109: Predicted me 22.1 37 0.0008 26.4 0.5 23 3-25 21-43 (78)
179 PRK15026 aminoacyl-histidine d 22.0 1.8E+02 0.0039 30.9 5.9 42 69-114 11-52 (485)
180 PLN02280 IAA-amino acid hydrol 21.5 5.3E+02 0.012 27.3 9.3 24 88-111 113-136 (478)
181 TIGR03320 ygeY M20/DapE family 21.1 2.5E+02 0.0055 28.5 6.7 39 69-111 14-53 (395)
182 PRK06156 hypothetical protein; 20.8 2.1E+02 0.0045 30.6 6.1 28 408-438 489-516 (520)
183 PRK08201 hypothetical protein; 20.6 5.7E+02 0.012 26.5 9.3 49 385-438 406-455 (456)
184 PRK13013 succinyl-diaminopimel 20.2 4.8E+02 0.01 26.7 8.6 55 379-439 368-424 (427)
No 1
>KOG2195|consensus
Probab=100.00 E-value=4e-34 Score=304.59 Aligned_cols=359 Identities=24% Similarity=0.326 Sum_probs=249.8
Q ss_pred HHHHHHHHccCCCCCCCHHHHHHHHHHHHHHHHcCCe-EEEEEEEeceeee----cccEE-------EEeCC-------C
Q psy9208 72 STLADFVDKFGPRMTGSEALENSIDFMVKESKDFGLE-VWTENVTAPKWER----HFEKV-------TLVKP-------W 132 (446)
Q Consensus 72 ~~l~~ls~~~g~R~~GS~g~~~a~~~i~~~l~~~Gl~-v~~q~f~~~~w~~----~~~~l-------~~~~~-------~ 132 (446)
..+..++. .++++||.....++.++..++.+.|++ ++.-.|.+....+ .+.-+ .+.+. .
T Consensus 60 ~~l~~~~~--~~~~a~t~~~~~~a~~i~~~~~~~g~~s~~~~~y~v~l~~p~~~~~~~~~~~~e~~~~i~~s~~~~~~~~ 137 (702)
T KOG2195|consen 60 KNLNAFTL--RPHLAGTEQDLRAAEIILSQYLEAGLRSSSLLAYDVLLSYPEYENPSSVLIKLEKDLEIFSSMPHELQVD 137 (702)
T ss_pred hccchhhh--hhhhhcchhhHHHHHHHHHHhhhhccccccccceeehhccccccCCccceecccccceeeccchhcccCC
Confidence 33444443 589999999999999999999999997 6666665543222 11111 11100 0
Q ss_pred Cce-eeEEecCCCCCCCCCCcee---------------------eccccEEEEecCCcCcchhhhhhhhhHHHHHHcCcE
Q psy9208 133 KSD-IPVSTLGGSVGTPQGGITA---------------------EVAGKIVVFNQDFVSYGETVKYRSKGASVASKYGAV 190 (446)
Q Consensus 133 ~~~-~~~~~l~~s~~t~~~gi~a---------------------~v~GkIvlv~~~~~~yg~~~~~~~~~~~~A~~~GA~ 190 (446)
|.+ .+...-++....+.+..++ .++|||++++.+.. ++.+++++|.++||.
T Consensus 138 Gd~~~~~~~~~~~~~s~~g~~~~~~Vy~N~~~~~d~~~l~~~~i~~~g~i~l~r~~~i-------~~g~~~~na~~~~a~ 210 (702)
T KOG2195|consen 138 GDEALPDIVEPFRAYSPSGSVTGELVYANYGRIEDFYKLEDLGINLSGKIVLARVGKI-------YRGKKVKNAEAAGAD 210 (702)
T ss_pred CcccCccccCchhccCcCCCccceEEEEecCchhhhhHhhcCcccccCceEEEEcccc-------chhhhHhhHHHhhcC
Confidence 000 0111111111111111111 17799999876633 344559999999999
Q ss_pred EEEEeccCCC------------C-CCCCCCccc----------------cC---------------CCCCCCCCEeEcCH
Q psy9208 191 ATLIRSVTPY------------S-LATPHTGHQ----------------SY---------------DAAVKPIPTACIAP 226 (446)
Q Consensus 191 avii~~~~~~------------~-~~~p~~g~~----------------~~---------------~~~~~~iP~~~Is~ 226 (446)
|||+|.+... . +..|..+.+ +| ....|.||+.+||.
T Consensus 211 gviiy~d~~d~~~~~~~~~~p~~~~~~p~~~v~~g~v~~~~~~gdp~tpg~pa~~~~~~~~~~~~~~~~~P~Ip~~Pis~ 290 (702)
T KOG2195|consen 211 GVIIYTDPYDYGSDEVLEVYPKGIWFMPEPGVERGKVYNSNGVGDPLTPGYPAVDIYSRHSPDAKFSGGLPKIPSLPISA 290 (702)
T ss_pred cEEEeeccccccccccccccCcccccCCccceecceecccCCCCCCCCCCccCccccccCChhhhhcCCCCCCCCcCccc
Confidence 9999986321 0 101111110 00 12267899999999
Q ss_pred HHHHHHHHHHhCCCCc---------------eEEEEEEEeEEeCCceeceEEEEEcCcCCCCcEEEEEecCCCCCCCCCc
Q psy9208 227 EYAEMLYRMYRRGDGP---------------VVVSINIDARNVGTTNTRNTIVQIRGRECPDKVVITSGHLDSWDVGQGA 291 (446)
Q Consensus 227 ~~~~~L~~~l~~g~~p---------------v~v~l~~~~~~~~~~~s~NVia~i~G~~~~~~~Vvl~aH~Ds~~~g~Ga 291 (446)
++++.|.+++..+-+| ....+.+.....+..+++||||.|+|++.||++|+||+|+|||.. ||
T Consensus 291 ~~ae~l~~~~~g~~~~~~~~~~~~~~gpg~~~~~~~~~~~~~~~~~ki~NIig~I~Gs~epD~~ViigahrDSw~~--Ga 368 (702)
T KOG2195|consen 291 EDAEILLRLLGGGVKPDGLLGVSYRVGPGSTGDKDLVVVQNTREETKIQNIIGKIEGSEEPDRYVIIGAHRDSWTF--GA 368 (702)
T ss_pred hhHHHHHHHhCCCcccccccCccccccccccccccceeccceeeeeeeeeEEEEEecCcCCCeEEEEecccccccc--CC
Confidence 9999999988643220 011111110124678999999999998899999999999999987 79
Q ss_pred ccCCCceeeE----------------------EEeeCccccccccHHHHHHHhHhhh-cceEEEEEecCCCCCccceeee
Q psy9208 292 MDDGGGAFIS----------------------GILWTAEEQGYVGAIAYVKKHQEEL-KNITVAMESDDGTFTPFGLSLK 348 (446)
Q Consensus 292 ~DngsG~a~l----------------------f~~~~aEE~Gl~GS~~y~~~~~~~~-~~i~~~in~D~g~~~~~~~~~~ 348 (446)
+|.++|+++| |++|+|||+|++||..|++.+...+ .+++++||+|+...++..+...
T Consensus 369 ~dp~sGta~Ll~i~~~~~~~~k~gwrP~RtI~F~sWdAeEfGliGStE~~E~~~~~L~~~av~yin~d~~~~~~~~l~~~ 448 (702)
T KOG2195|consen 369 IDPNSGTALLLEIARALSKLKKRGWRPRRTILFASWDAEEFGLLGSTEWAEEYLKNLKSRAVVYINVDNAVLGDYTLHVK 448 (702)
T ss_pred cCCCccHHHHHHHHHHHHHHHHcCCCccceEEEEEccchhccccccHHHHHHHHHHhhheeEEEEeccccccCCceeEEe
Confidence 9999999876 9999999999999999999998665 6899999999977776789999
Q ss_pred cChhHHHHHHHHHHHhCC-CCCcc---ccCCCCCCCCchHhHHh-CCCeEEEeeeCCCCCCCCCcCCCCCcC---C-CCH
Q psy9208 349 GSPEAACILNKVLRLFKP-INATR---LVQSKYPVGSDIELFQE-KNIPGVALLNDNAKYFWYHHTRADTMS---V-LDS 419 (446)
Q Consensus 349 gs~~l~~l~~~~~~~~~~-~~~~~---~~~~~~~~gSD~~~F~~-~GIP~~~l~~~~~~y~~~yHt~~Dt~d---~-ld~ 419 (446)
++|.+.+++++.++.+.. ..... +..++ .+|||.+|.. +|||++.+.+.. .| |+|||..||++ + +|+
T Consensus 449 ~~PlL~~li~~~~k~~~~p~~~~~~~~v~~~g--~~Sd~~~F~~~~GIpsv~~~f~~-~y-P~yhs~~dt~~~~~k~~D~ 524 (702)
T KOG2195|consen 449 TTPLLTDLIEEAAKSVLSPDKGDQSNRVLSLG--GGSDYASFLQFAGIPSVDFAFNR-TY-PFYHSTYDTYEWLDKLLDP 524 (702)
T ss_pred cCccHHHHHHHHHhccCCCCccccceeEeccC--CCCcchhhccccCcceeeeeecC-Cc-ceeecccCcHHHHHHhcch
Confidence 999999999999987542 22222 33344 6799999996 999999998865 66 89999999944 4 355
Q ss_pred H--HHHHHHHHHHHHHHHHhcCCCCCCCC
Q psy9208 420 D--TLDLCTALWGGVAYILADLSVELPRT 446 (446)
Q Consensus 420 ~--~l~~~~~~~a~~~~~lA~~~~~~p~~ 446 (446)
. .+..++.++...++.+++ +.-+|.+
T Consensus 525 ~~~~~~~~a~~~~~~~l~l~~-d~llPfd 552 (702)
T KOG2195|consen 525 KFKQHLAAAGVLGLELLILAD-DPLLPFD 552 (702)
T ss_pred hHHHHHHHHHHHHHHHHHHhc-CccccCc
Confidence 4 466677778888888888 7767764
No 2
>COG4882 Predicted aminopeptidase, Iap family [General function prediction only]
Probab=99.96 E-value=1.4e-27 Score=229.45 Aligned_cols=325 Identities=20% Similarity=0.199 Sum_probs=235.8
Q ss_pred HccCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEEEeceeeecccEEEEeCCCCceeeEEecCCCCCCCCCC----cee
Q psy9208 79 DKFGPRMTGSEALENSIDFMVKESKDFGLEVWTENVTAPKWERHFEKVTLVKPWKSDIPVSTLGGSVGTPQGG----ITA 154 (446)
Q Consensus 79 ~~~g~R~~GS~g~~~a~~~i~~~l~~~Gl~v~~q~f~~~~w~~~~~~l~~~~~~~~~~~~~~l~~s~~t~~~g----i~a 154 (446)
..+|.=.+|++|+..+++||...|++.-...++.||.+..|+..+..++. .-+-+....+|||.++.-+| +.+
T Consensus 10 ~ayg~li~g~~ger~~v~~vrafLe~~~v~~rL~p~~VlaWe~~e~~le~---~~~~i~ai~~PYsls~~IEgr~v~~~g 86 (486)
T COG4882 10 GAYGWLIVGAGGERGAVEVVRAFLEESLVSSRLHPFWVLAWELRESGLEP---AASWISAIVGPYSLSGDIEGRPVVLEG 86 (486)
T ss_pred hhccceeecCCCchhHHHHHHHHHhccccceeeeeeeeehhhhHhhccCc---chhhhhhcccccccccccccceecccC
Confidence 34688999999999999999999988766699999999999877665543 32334556789988776544 345
Q ss_pred eccccEEEEecCCcCcchhhhhhhhhHHHHHHcCcEEEEEeccCCCCCCCCCCccccC--CCCCCCCCEeEcCHHHHHHH
Q psy9208 155 EVAGKIVVFNQDFVSYGETVKYRSKGASVASKYGAVATLIRSVTPYSLATPHTGHQSY--DAAVKPIPTACIAPEYAEML 232 (446)
Q Consensus 155 ~v~GkIvlv~~~~~~yg~~~~~~~~~~~~A~~~GA~avii~~~~~~~~~~p~~g~~~~--~~~~~~iP~~~Is~~~~~~L 232 (446)
++.|++++-.++..-+... +-+..|+++||.|+|+-++.+.. ...+|...| +..+++||++.+...++..+
T Consensus 87 D~~Gr~~Va~~pq~vdd~k-----~~~i~Aae~ga~a~~f~~~~~rr--iV~~Gd~gy~~~s~PtPIPva~v~en~~~y~ 159 (486)
T COG4882 87 DAGGRVVVARAPQVVDDLK-----AAAILAAEAGAEALLFESRDPRR--IVTGGDWGYSVSSSPTPIPVAVVPENYSRYA 159 (486)
T ss_pred CCCCeEEeeeccccHHHHH-----HHHHHHHHcCCeEEEEecCCcee--EEecccccccCCCCCCCcceEEeccCcchhh
Confidence 6999999988876534321 22788999999999997765532 122333333 23578899999988877655
Q ss_pred HHHHhCCCCceEEEEEEEeEEeCCceeceEEEEEcCcCCCCcEEEEEecCCCCCCCCCcccCCCceeeE-----------
Q psy9208 233 YRMYRRGDGPVVVSINIDARNVGTTNTRNTIVQIRGRECPDKVVITSGHLDSWDVGQGAMDDGGGAFIS----------- 301 (446)
Q Consensus 233 ~~~l~~g~~pv~v~l~~~~~~~~~~~s~NVia~i~G~~~~~~~Vvl~aH~Ds~~~g~Ga~DngsG~a~l----------- 301 (446)
.. . -++++.+|... .....+|+|+.-.| .+.+|+++||+|||.. |+.||-.|++..
T Consensus 160 ~~-----~--~rvrl~vD~~~-~~ty~y~~Ia~~~~---en~vv~i~AH~DHW~~--G~tDN~lg~~~AV~~~~~lr~~~ 226 (486)
T COG4882 160 EE-----A--GRVRLWVDACV-ERTYDYNVIAVDGG---ENGVVLIGAHLDHWYT--GFTDNILGVAQAVETAGRLRGRG 226 (486)
T ss_pred cc-----c--eeEEEEEeccc-ceeEEEEEEEecCC---CCCceEEeechhhhhh--cccchhhhHHHHHHHHHHHhhcC
Confidence 42 2 46788888764 45689999998654 4679999999999998 999999988654
Q ss_pred ----EEeeCcccccc---------ccHHHHHHHhHhhhcceEEEEEecCCCCCccceeeecChhHHHHHHHHHHHhCCCC
Q psy9208 302 ----GILWTAEEQGY---------VGAIAYVKKHQEELKNITVAMESDDGTFTPFGLSLKGSPEAACILNKVLRLFKPIN 368 (446)
Q Consensus 302 ----f~~~~aEE~Gl---------~GS~~y~~~~~~~~~~i~~~in~D~g~~~~~~~~~~gs~~l~~l~~~~~~~~~~~~ 368 (446)
++.|+|||.|+ .||+.|.++.+ ..+.+.+++|+|..+.+. +...+.|.+..+..++.
T Consensus 227 ~~~~lv~FtAEE~g~p~~~sfyWa~GSr~~lk~~k-~~~~v~~~VN~Dv~g~~~--lv~~~~P~L~e~~~~~g------- 296 (486)
T COG4882 227 LAAGLVVFTAEEHGMPGMASFYWAAGSRGLLKESK-AAEEVEAYVNFDVAGYRC--LVASGAPQLVEHALEAG------- 296 (486)
T ss_pred cceeEEEEeccccCCCCCcceeecccchHHHhhcC-Cchhhhheeccccccccc--hhhhcChHHHHHHHHhC-------
Confidence 89999999986 59999998765 234688999999966543 34577787766665443
Q ss_pred CccccCCCCCCCCchHhHHhCCCeEEEeeeCCCCC-CCCCcCCCCCcCCCCHHHHHHHHHHHHHHHHHHhcCCCCCC
Q psy9208 369 ATRLVQSKYPVGSDIELFQEKNIPGVALLNDNAKY-FWYHHTRADTMSVLDSDTLDLCTALWGGVAYILADLSVELP 444 (446)
Q Consensus 369 ~~~~~~~~~~~gSD~~~F~~~GIP~~~l~~~~~~y-~~~yHt~~Dt~d~ld~~~l~~~~~~~a~~~~~lA~~~~~~p 444 (446)
...+..|. .-+|...+..+|||++++.+-...| ..+||++.||....| ++-.++.++-++++...+.|
T Consensus 297 ~~~vespe--~y~Ds~~y~~aGiPS~Ti~SL~~~~~~e~yh~p~Dtpa~~~------n~~t~~d~a~r~v~~~ie~p 365 (486)
T COG4882 297 AVEVESPE--PYCDSIMYAWAGIPSLTIHSLWCPGVQEAYHTPRDTPASWD------NAWTAVDAAVRTVTRGIEWP 365 (486)
T ss_pred CceecCCC--cccchhhhhhcCCCeeEeeeccCCCccceecCCCCCchhHH------HHHHHHHHHHHHHhcCCCCC
Confidence 32344455 5689999999999999998854333 358999999984322 22223344556665555444
No 3
>PF04389 Peptidase_M28: Peptidase family M28; InterPro: IPR007484 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This domain is found in metallopeptidases belonging to the MEROPS peptidase family M28 (aminopeptidase Y, clan MH) []. They also contain a transferrin receptor-like dimerisation domain (IPR007365 from INTERPRO) and a protease-associated PA domain (IPR003137 from INTERPRO).; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 3BXM_A 2C6P_A 1Z8L_C 3SJF_A 3BHX_A 2C6G_A 3D7F_A 2XEG_A 3BI1_A 2C6C_A ....
Probab=99.94 E-value=2.1e-27 Score=217.35 Aligned_cols=148 Identities=29% Similarity=0.377 Sum_probs=106.7
Q ss_pred cEEEEEecCCCCC------CCCCcccCCCceeeE-------------------EEeeCccccccccHHHHHHHhHhhhcc
Q psy9208 274 KVVITSGHLDSWD------VGQGAMDDGGGAFIS-------------------GILWTAEEQGYVGAIAYVKKHQEELKN 328 (446)
Q Consensus 274 ~~Vvl~aH~Ds~~------~g~Ga~DngsG~a~l-------------------f~~~~aEE~Gl~GS~~y~~~~~~~~~~ 328 (446)
|+|||+||+||++ ..+||+|||||++++ |+||++||.|++||++|+++...++++
T Consensus 1 e~ivi~aH~Ds~~~~~~~~~~~GA~DnasGva~lLelAr~l~~~~~~~~~~i~fv~~~~EE~gl~GS~~~~~~~~~~~~~ 80 (179)
T PF04389_consen 1 EYIVIGAHYDSVGGDADGSWSPGANDNASGVAALLELARVLKELKPQPKRTIRFVFFDGEEQGLLGSRAFVEHDHEELDN 80 (179)
T ss_dssp EEEEEEEE--BESCCC-TCSSS-TTTTHHHHHHHHHHHHHHHHSTHSSSEEEEEEEESSGGGTSHHHHHHHHHHHCHHHH
T ss_pred CEEEEEeecCCCCCcCCCcccCCcccchHHHHHHHHHHHHHHHhhcccCccEEEEEecccccCccchHHHHHhhhccccc
Confidence 5899999999988 889999999999988 999999999999999999965577889
Q ss_pred eEEEEEecCCCCCccceeeecChh----HHHHHHHHHHHh-CCCCCccc-cCCCCCCCCchHhHHhCCCeEEEeeeCCCC
Q psy9208 329 ITVAMESDDGTFTPFGLSLKGSPE----AACILNKVLRLF-KPINATRL-VQSKYPVGSDIELFQEKNIPGVALLNDNAK 402 (446)
Q Consensus 329 i~~~in~D~g~~~~~~~~~~gs~~----l~~l~~~~~~~~-~~~~~~~~-~~~~~~~gSD~~~F~~~GIP~~~l~~~~~~ 402 (446)
+.++||+||.+.....+.....+. +.+.+.++.+.+ ...+.... ..+. ..+|||.||...|||++.+.... .
T Consensus 81 ~~~~inlD~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~sD~~~F~~~gip~~~~~~~~-~ 158 (179)
T PF04389_consen 81 IAAVINLDMIGSGDPTVYSEGSPSLPSRLEAYLSSFKQPYGSSLGPDVPPEKPT-FGGSDHYPFSKAGIPAVTLSSTD-G 158 (179)
T ss_dssp EEEEEEECSSBSSSSEEEEEEGGGHHHHHHHHHHHHHHHHHCHTSSECEEEESS-TTSSTCHHHHTTT-EEEEEEESS-S
T ss_pred ceeEEeccccccCcccceeeeeccccchhhhhhhhhhhhhhcccccccccccCC-CCCCCcHhhhcCCEeEEEEEecC-C
Confidence 999999999554444444444442 334444443321 11222111 1122 25699999999999999998865 3
Q ss_pred CCCCCcCCCCCcCCCCHHHHH
Q psy9208 403 YFWYHHTRADTMSVLDSDTLD 423 (446)
Q Consensus 403 y~~~yHt~~Dt~d~ld~~~l~ 423 (446)
+.++|||++||++++|++.|+
T Consensus 159 ~~~~~Ht~~Dt~~~~~~~~l~ 179 (179)
T PF04389_consen 159 YNPYYHTPEDTPDNLDPDTLQ 179 (179)
T ss_dssp SGTTTTSTT-SGGGC-HHHH-
T ss_pred CCCCCCCcccChhhcCCccCC
Confidence 458899999999999999875
No 4
>PRK10199 alkaline phosphatase isozyme conversion aminopeptidase; Provisional
Probab=99.94 E-value=1.4e-25 Score=221.97 Aligned_cols=179 Identities=20% Similarity=0.196 Sum_probs=128.8
Q ss_pred ceeceEEEEEcCcCCCCcEEEEEecCCCCC--------------CCCCcccCCCceeeE-----------------EEee
Q psy9208 257 TNTRNTIVQIRGRECPDKVVITSGHLDSWD--------------VGQGAMDDGGGAFIS-----------------GILW 305 (446)
Q Consensus 257 ~~s~NVia~i~G~~~~~~~Vvl~aH~Ds~~--------------~g~Ga~DngsG~a~l-----------------f~~~ 305 (446)
.+..||||.++|+ .++.|+++||+|+++ .+|||+||++|++++ |+++
T Consensus 95 ~~g~nVIa~~~G~--~~~~Ill~AH~DTV~p~~~~~~~~~~~g~~~~GA~DnasGvA~lLe~ar~l~~~~~~~~I~fv~~ 172 (346)
T PRK10199 95 VTGSTVIAAHEGK--APQQIIIMAHLDTYAPQSDADVDANLGGLTLQGMDDNAAGLGVMLELAERLKNVPTEYGIRFVAT 172 (346)
T ss_pred CccceEEEEECCC--CCCeEEEEEEcCcCCCCCCCccccCCCCcccCCccccHHHHHHHHHHHHHHhhCCCCCcEEEEEE
Confidence 3457899999885 457899999999985 247999999999988 9999
Q ss_pred CccccccccHHHHHHHhH-hhhcceEEEEEecCCCCCccceeeecChhHHH-------HHHHHHHHhCCCCCccccC---
Q psy9208 306 TAEEQGYVGAIAYVKKHQ-EELKNITVAMESDDGTFTPFGLSLKGSPEAAC-------ILNKVLRLFKPINATRLVQ--- 374 (446)
Q Consensus 306 ~aEE~Gl~GS~~y~~~~~-~~~~~i~~~in~D~g~~~~~~~~~~gs~~l~~-------l~~~~~~~~~~~~~~~~~~--- 374 (446)
++||.|+.||++|+++++ .++++++++||+||...........|...+.. .+.++++. .|.+....
T Consensus 173 ~~EE~Gl~GS~~~~~~~~~~~~~~~~~~iNlD~~~~~d~~~~~~g~~~~~~~~~~~~d~~~~~a~~---~g~~~~~~~~~ 249 (346)
T PRK10199 173 SGEEEGKLGAENLLKRMSDTEKKNTLLVINLDNLIVGDKLYFNSGVNTPEAVRKLTRDRALAIARR---HGIAATTNPGL 249 (346)
T ss_pred CCcccCcHHHHHHHHhcCccchhcEEEEEEeccCCCCCceEEecCCCcHHHHhHHHHHHHHHHHHH---cCCccccCCCc
Confidence 999999999999999876 46789999999999432222222234333322 24444433 33322111
Q ss_pred ----C-CCCCCCchHhHHhCCCeEEEeeeCC------C--------CCC---CCCc-CCCCCcCCCCHH-------HHHH
Q psy9208 375 ----S-KYPVGSDIELFQEKNIPGVALLNDN------A--------KYF---WYHH-TRADTMSVLDSD-------TLDL 424 (446)
Q Consensus 375 ----~-~~~~gSD~~~F~~~GIP~~~l~~~~------~--------~y~---~~yH-t~~Dt~d~ld~~-------~l~~ 424 (446)
| +.+.+|||+||.++|||++.+...+ . .++ ..|| |..|+++.+|.. .++.
T Consensus 250 ~~~~p~g~~~rSDH~~F~~~GIP~l~~~a~n~~~g~~d~~~q~~~~~~~~~g~~~h~~~~d~~~~l~~~~pgri~~~~~~ 329 (346)
T PRK10199 250 NKNYPKGTGCCNDAEVFDKAGIPVLSVEATNWNLGNKDGYQQRAKTAAFPAGNSWHDVRLDNQQHIDKALPGRIERRCRD 329 (346)
T ss_pred cccccCCCcCCcccHHHHhcCCCeEEeeccccccCCcccceecccCccCCCCccccCcCcchHHHHHHhcchHHHHHHHh
Confidence 1 1235699999999999999995532 1 122 3568 799999999865 4777
Q ss_pred HHHHHHHHHHHHhcCC
Q psy9208 425 CTALWGGVAYILADLS 440 (446)
Q Consensus 425 ~~~~~a~~~~~lA~~~ 440 (446)
.++++..++-.||+..
T Consensus 330 ~~~~~~~~~~~~~~~~ 345 (346)
T PRK10199 330 VVRIMLPLVKELAKAS 345 (346)
T ss_pred HHHHHHHHHHHHhccC
Confidence 8888889998888753
No 5
>COG2234 Iap Predicted aminopeptidases [General function prediction only]
Probab=99.82 E-value=7.1e-20 Score=190.43 Aligned_cols=236 Identities=24% Similarity=0.249 Sum_probs=158.5
Q ss_pred HHHHHHcCcEEEEEeccCCCCCCCCCCccccCC--CCCCCCCEeEcCHHHHHHHHHHHhCCCCceEEEEEEEeEEeCCce
Q psy9208 181 ASVASKYGAVATLIRSVTPYSLATPHTGHQSYD--AAVKPIPTACIAPEYAEMLYRMYRRGDGPVVVSINIDARNVGTTN 258 (446)
Q Consensus 181 ~~~A~~~GA~avii~~~~~~~~~~p~~g~~~~~--~~~~~iP~~~Is~~~~~~L~~~l~~g~~pv~v~l~~~~~~~~~~~ 258 (446)
...+...|+.+.+.+...... ..+.++..... .....+|+..+....+..+....+.+.. ......+... . ..
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~--~-~~ 194 (435)
T COG2234 120 APNAVEAGAAAFILYASVAAE-NFPKLGLIGTGRALYLAEIPAVGVSKLVGNRLIFYKQAGGG-LTSKNVAATI--S-GS 194 (435)
T ss_pred ccchhhcccchheeecccccc-cccccccccccccccccccccccccccchhHHhhhhhcCcc-eEEEEEeeee--e-cc
Confidence 455778888888887654321 12222221111 1345789999999988888887776644 4444444332 2 23
Q ss_pred eceEEEEEcCcCCCCcEEEEEecCCCCCCCCCcccCCCceeeE-----------------EEeeCccccccccHHHHHHH
Q psy9208 259 TRNTIVQIRGRECPDKVVITSGHLDSWDVGQGAMDDGGGAFIS-----------------GILWTAEEQGYVGAIAYVKK 321 (446)
Q Consensus 259 s~NVia~i~G~~~~~~~Vvl~aH~Ds~~~g~Ga~DngsG~a~l-----------------f~~~~aEE~Gl~GS~~y~~~ 321 (446)
+.+..+.+... ..+.++++++|+|+++.+|||+|||||++++ |++|++||.||.||++|+.+
T Consensus 195 ~~~~~~~~~~~-~~~~~~~~~a~~~s~~~~~GA~DNasGva~llEiAr~l~~~~p~~~v~f~~~~aEE~Gl~GS~~~~~~ 273 (435)
T COG2234 195 SQIIEAIIGTA-HSDSLGLLGAHIDSVPTGPGADDNASGVAALLELARVLKGNPPKRTVRFVAFGAEESGLLGSEAYVKR 273 (435)
T ss_pred cccceEEEecc-CCCceeeecccccCCcCCCCcccccHHHHHHHHHHHHHhcCCCCceEEEEEecchhhcccccHHHHhc
Confidence 56666666654 7899999999999999999999999999988 99999999999999999999
Q ss_pred hHh-hhcceEEEEEecCCCCC--ccceee--ecChhHHHHHHHHHHHhC-CCCCccccCCCCCCCCchHhHHhCCCeEEE
Q psy9208 322 HQE-ELKNITVAMESDDGTFT--PFGLSL--KGSPEAACILNKVLRLFK-PINATRLVQSKYPVGSDIELFQEKNIPGVA 395 (446)
Q Consensus 322 ~~~-~~~~i~~~in~D~g~~~--~~~~~~--~gs~~l~~l~~~~~~~~~-~~~~~~~~~~~~~~gSD~~~F~~~GIP~~~ 395 (446)
+.. +.+++.++||+||.+.. ...+.. .+.+...+.+.+....+. .......... ..+|||+||..+|||++.
T Consensus 274 ~~~~~~~~~~~viN~Dm~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~sd~~~f~~~gi~~~~ 351 (435)
T COG2234 274 LSKDLDKKIALVINLDMLGSPNPTPTLILYGNGLERVPPGLRAVAALIGRPVDPSTVQDF--DPRSDHYPFTEAGIPSLF 351 (435)
T ss_pred CCcchhhhhheEEecccccCCCCCcceEEeccCCccccchHHHHHHHHHhhccccccCCC--CCCCcchhhhhcCCccee
Confidence 984 45677789999995443 222222 222222233333332221 1111112222 267999999999999999
Q ss_pred eeeCCCC---CCCCCcCCCCCcCCCCHHHHHHHH
Q psy9208 396 LLNDNAK---YFWYHHTRADTMSVLDSDTLDLCT 426 (446)
Q Consensus 396 l~~~~~~---y~~~yHt~~Dt~d~ld~~~l~~~~ 426 (446)
++..... ...++||..|| ++ |...+....
T Consensus 352 ~~~~~~~~~~~~~~~~t~~d~-~~-d~~~~~~~~ 383 (435)
T COG2234 352 LFSGAPGGVEAVAWGHTAADT-DK-DLSTLDQHG 383 (435)
T ss_pred eeecCCccccccccccccccc-cc-chhhhcccc
Confidence 9986544 34789999998 77 666555444
No 6
>KOG2194|consensus
Probab=99.67 E-value=9.9e-17 Score=171.59 Aligned_cols=178 Identities=24% Similarity=0.366 Sum_probs=138.6
Q ss_pred eeceEEEEEcCcCCCCc-EEEEEecCCCCCCCCCcccCCCceeeE-------------------EEeeCccccccccHHH
Q psy9208 258 NTRNTIVQIRGRECPDK-VVITSGHLDSWDVGQGAMDDGGGAFIS-------------------GILWTAEEQGYVGAIA 317 (446)
Q Consensus 258 ~s~NVia~i~G~~~~~~-~Vvl~aH~Ds~~~g~Ga~DngsG~a~l-------------------f~~~~aEE~Gl~GS~~ 317 (446)
...||+..+.++...++ .|++.||+||++.+|||.|||++|++| |.|+++||.+|.||..
T Consensus 127 ~i~NIvVki~~k~~~~~~~lLlnaHfDSvpt~~gAtDDg~~va~mLe~lRv~s~~~~~l~~~vVFLfNgaEE~~L~gsH~ 206 (834)
T KOG2194|consen 127 NISNIVVKISPKNGNDKNALLLNAHFDSVPTGPGATDDGSGVASMLEALRVLSKSDKLLTHSVVFLFNGAEESGLLGSHA 206 (834)
T ss_pred eeeeEEEecCCCCCCccceeeeeccccccCCCCCCCcchhHHHHHHHHHHHhhcCCCcccccEEEEecCcccchhhhccc
Confidence 45688888877644555 999999999999999999999999988 9999999999999999
Q ss_pred HHHHhHhhhcceEEEEEecCCCCCccceeeecChhHHHHHHHHHHHhC-CCCCc----cccCCCCCCCCchHhHHhC-CC
Q psy9208 318 YVKKHQEELKNITVAMESDDGTFTPFGLSLKGSPEAACILNKVLRLFK-PINAT----RLVQSKYPVGSDIELFQEK-NI 391 (446)
Q Consensus 318 y~~~~~~~~~~i~~~in~D~g~~~~~~~~~~gs~~l~~l~~~~~~~~~-~~~~~----~~~~~~~~~gSD~~~F~~~-GI 391 (446)
|+.+|+ ..++++++||+|..+.+...+-+..+|.- .+++.+.+.+. +.+-+ .+......+.+|+..|.+. |+
T Consensus 207 FItQH~-w~~~~ka~INLea~GsGGreiLFQagp~~-wl~k~Y~~~~phPf~stlgee~Fq~g~IpSdTDfrif~eyg~l 284 (834)
T KOG2194|consen 207 FITQHP-WSKNIKAVINLEAAGSGGREILFQAGPNH-WLLKAYLQAAPHPFASTLGEELFQSGIIPSDTDFRIFREYGHL 284 (834)
T ss_pred ceecCh-hhhhhheEEeccccCcccceeEEecCCch-HHHHHHHhhCCCchhhhhHHHhhhcCcCccccchHHHHHhCCc
Confidence 999987 23589999999995444444444555543 66666655431 22221 2322222245899999854 69
Q ss_pred eEEEeeeCCCCCCCCCcCCCCCcCCCCHHHHHHHHHHHHHHHHHHhcC
Q psy9208 392 PGVALLNDNAKYFWYHHTRADTMSVLDSDTLDLCTALWGGVAYILADL 439 (446)
Q Consensus 392 P~~~l~~~~~~y~~~yHt~~Dt~d~ld~~~l~~~~~~~a~~~~~lA~~ 439 (446)
|++.+...... ..|||..|.++.+-+..+++.+..+..++..||+.
T Consensus 285 ~GLD~A~~~Ng--~vYHTk~D~~~~i~~gs~q~tGen~L~~v~~lan~ 330 (834)
T KOG2194|consen 285 PGLDMAFVKNG--YVYHTKYDGIQYIPPGSLQHTGENILALVRSLANS 330 (834)
T ss_pred ccceeeeeecc--ceEEeecccccccCcchhhhhhhHHHHHHHHHhch
Confidence 99999875443 36899999999999999999999999999999998
No 7
>cd04815 PA_M28_2 PA_M28_2: Protease-associated (PA) domain, peptidase family M28, subfamily-2. A subfamily of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subfamilies; relatively little is known a
Probab=99.66 E-value=5.5e-16 Score=135.19 Aligned_cols=109 Identities=55% Similarity=0.779 Sum_probs=90.8
Q ss_pred eEEecCCCCCCCCCCceee-----------------ccccEEEEecCCc------CcchhhhhhhhhHHHHHHcCcEEEE
Q psy9208 137 PVSTLGGSVGTPQGGITAE-----------------VAGKIVVFNQDFV------SYGETVKYRSKGASVASKYGAVATL 193 (446)
Q Consensus 137 ~~~~l~~s~~t~~~gi~a~-----------------v~GkIvlv~~~~~------~yg~~~~~~~~~~~~A~~~GA~avi 193 (446)
.+.+++||++|+.+|++++ ++|||||++++.| .|+....+|.++...|+++||+|+|
T Consensus 2 ~~~~l~~s~~t~~~gvta~vv~v~~~~~~~~~~~~~v~GKIvlv~~~~~~~~~~~~~~~k~~~r~~~~~~A~~~GA~avI 81 (134)
T cd04815 2 AILALGGSVATPPEGITAEVVVVKSFDELKAAPAGAVKGKIVFFNQPMVRTQTGSGYGPTVAYRRRGAVEAAKKGAVAVL 81 (134)
T ss_pred cEEeeCCCCCCCCCCcEEEEEEECCHHHHHhcchhhcCCeEEEecCCccccCchhhcCchhhhhhHHHHHHHhCCCEEEE
Confidence 3456778888887777654 8999999999999 8988777777778999999999999
Q ss_pred EeccCCCCCCCCCCccccCCCCCCCCCEeEcCHHHHHHHHHHHhCCCCceEEE
Q psy9208 194 IRSVTPYSLATPHTGHQSYDAAVKPIPTACIAPEYAEMLYRMYRRGDGPVVVS 246 (446)
Q Consensus 194 i~~~~~~~~~~p~~g~~~~~~~~~~iP~~~Is~~~~~~L~~~l~~g~~pv~v~ 246 (446)
++|..+...+.+|+|+.++.+..+.||++.|+.+++.+|.+++++|++ ++++
T Consensus 82 v~s~~~~~~~~~~~G~~~~~~~~~~IP~v~is~ed~~~L~r~l~~g~~-v~~~ 133 (134)
T cd04815 82 IRSIGTDSHRSPHTGMMSYDDGVPKIPAAAISVEDADMLERLAARGKP-IRVN 133 (134)
T ss_pred EEecCcccCCCCcCCccccCCCCCCCCEEEechhcHHHHHHHHhCCCC-eEEe
Confidence 999766555567888877755567899999999999999999999987 6655
No 8
>KOG3946|consensus
Probab=99.43 E-value=6.6e-13 Score=125.03 Aligned_cols=216 Identities=18% Similarity=0.151 Sum_probs=140.1
Q ss_pred CCCCCEeEcCHHHHHHHHHHHhCCCCceEEEEEEEeEEeCCceeceEEEEEcCcCCCCcEEEEEecCCCCCCC----CCc
Q psy9208 216 VKPIPTACIAPEYAEMLYRMYRRGDGPVVVSINIDARNVGTTNTRNTIVQIRGRECPDKVVITSGHLDSWDVG----QGA 291 (446)
Q Consensus 216 ~~~iP~~~Is~~~~~~L~~~l~~g~~pv~v~l~~~~~~~~~~~s~NVia~i~G~~~~~~~Vvl~aH~Ds~~~g----~Ga 291 (446)
.+++|.-.=+.+..+-|.+.+++-.=.+......+..-.......|+|+++.- ..++++++.+||||...- -||
T Consensus 62 v~Rvpgs~g~~~vr~~i~~~l~~l~w~ve~~~f~~~tp~g~~~f~nii~tl~~--~A~r~lVlachydsk~~p~~~~vga 139 (338)
T KOG3946|consen 62 VPRVPGSPGSRQVRRFIIQHLRNLGWAVETDAFTDNTPLGTRNFNNLIATLDP--NASRYLVLACHYDSKIFPGGMFVGA 139 (338)
T ss_pred ccccCCCCccHHHHHHHHHHHHhcCceeeeccccccCcceeeeeeeEEEecCC--CcchheeeecccccccCCCcceEee
Confidence 34566656677888888887765320022111112111234567899999874 478999999999997642 378
Q ss_pred ccCCCceeeE-----------------------EEeeCcccc--------ccccHHHHHHHhHh----------hhcceE
Q psy9208 292 MDDGGGAFIS-----------------------GILWTAEEQ--------GYVGAIAYVKKHQE----------ELKNIT 330 (446)
Q Consensus 292 ~DngsG~a~l-----------------------f~~~~aEE~--------Gl~GS~~y~~~~~~----------~~~~i~ 330 (446)
.|.+.-||++ .+||+|||. .++||++-++.+.. .+++|.
T Consensus 140 tdsAvpcamll~laq~l~~~~~~~~~~s~lsL~LvFFDGEEAf~eW~p~DSlYGsRhLA~~~~sw~~~~~r~~~~ld~id 219 (338)
T KOG3946|consen 140 TDSAVPCAMLLNLAQALDKILCSKVSASQLSLQLVFFDGEEAFEEWGPEDSLYGSRHLAAKWESWPHSGIRGDLLLDGID 219 (338)
T ss_pred ccccccHHHHHHHHHHHHHHHhcccCcCceeEEEEEeccHHHHhhcCCccccchHHHHHHHHhccCCCCCccccccccch
Confidence 8999999887 899999983 57999999998322 345676
Q ss_pred EEEEecC-CCCCccceee-ecChhH----HHHHHHHHH--HhC--CCCCccccC--CCCCCCCchHhHHhCCCeEEEeee
Q psy9208 331 VAMESDD-GTFTPFGLSL-KGSPEA----ACILNKVLR--LFK--PINATRLVQ--SKYPVGSDIELFQEKNIPGVALLN 398 (446)
Q Consensus 331 ~~in~D~-g~~~~~~~~~-~gs~~l----~~l~~~~~~--~~~--~~~~~~~~~--~~~~~gSD~~~F~~~GIP~~~l~~ 398 (446)
..+=+|- |+.++.--.. ..+... ..+=.+..+ .++ +.....+.. .....+.||.||.+.|||++.++.
T Consensus 220 l~vLldllga~~p~f~~~~~~t~~wF~Rl~~iE~~l~~~g~l~s~r~~~~~Fq~~~~~~~veDDHiPFlrrgVPVLHlI~ 299 (338)
T KOG3946|consen 220 LLVLLDLLGAPNPTFYNFFPNTDRWFHRLQSIEGELALLGLLASHRLPPRYFQPGGLSSVVEDDHIPFLRRGVPVLHLIP 299 (338)
T ss_pred HhhhHHHhcCCChhHhhcCcchHHHHHHHHHHHHHHHHHHHHHhccCCchhccccCccccccCCcchhhhcCCceEEecC
Confidence 7777776 6655542111 112211 111111111 111 111222221 111145899999999999999997
Q ss_pred CCCCCCCCCcCCCCCcCCCCHHHHHHHHHHHHHHHHH
Q psy9208 399 DNAKYFWYHHTRADTMSVLDSDTLDLCTALWGGVAYI 435 (446)
Q Consensus 399 ~~~~y~~~yHt~~Dt~d~ld~~~l~~~~~~~a~~~~~ 435 (446)
.+|...|||+.|+..++|+...++.+.++..++..
T Consensus 300 --~pFPsvWHt~dD~e~nldy~tt~~~~lilr~Fv~e 334 (338)
T KOG3946|consen 300 --VPFPSVWHTPDDNERNLDYATTDNLALIIRVFVAE 334 (338)
T ss_pred --CCCcccccCccchhhcCCchhHHHHHHHHHHHHHH
Confidence 45667899999999999999999999888777654
No 9
>PF09940 DUF2172: Domain of unknown function (DUF2172); InterPro: IPR012353 The proteins in this entry are encoded by genes located in polysaccharide biosynthesis gene clusters, and are therefore believed to be involved in polysaccharide biosynthesis. The ste gene cluster (for Streptomyces eps) is involved in exopolysaccharide EPS 139A biosynthesis in Streptomyces sp. 139 []. Members of this group exhibit distant sequence similarity to aminopeptidases (IPR007484 from INTERPRO, MEROPS peptidase family M28).; PDB: 3K9T_A.
Probab=99.30 E-value=5.4e-11 Score=117.51 Aligned_cols=198 Identities=20% Similarity=0.213 Sum_probs=121.8
Q ss_pred CCEeEcCHHHHHHHHHHHhCCCCceEEEEEEEeEEeCCceeceEEEEEcCcCCCCcEEEEEecCCCCCCCCCcccCCCce
Q psy9208 219 IPTACIAPEYAEMLYRMYRRGDGPVVVSINIDARNVGTTNTRNTIVQIRGRECPDKVVITSGHLDSWDVGQGAMDDGGGA 298 (446)
Q Consensus 219 iP~~~Is~~~~~~L~~~l~~g~~pv~v~l~~~~~~~~~~~s~NVia~i~G~~~~~~~Vvl~aH~Ds~~~g~Ga~DngsG~ 298 (446)
-..+||+.+.-+.|. .|+ .++.+++. +.+.....---.+|| ..++.|++++|.+|.. -||||.||.
T Consensus 86 ~WGFCl~~~~~~~L~----dg~----Y~V~IdS~-l~~G~L~ygE~~ipG--~s~~EillsthiCHPs---mANdnLSG~ 151 (386)
T PF09940_consen 86 RWGFCLSHNQLDALP----DGE----YEVVIDST-LEDGSLTYGEFVIPG--ESDEEILLSTHICHPS---MANDNLSGP 151 (386)
T ss_dssp ---EE--HHHHHT------SSE----EEEEEEEE-EES-EEEEEEEEE----SSS-EEEEEEE----S----TTTTHHHH
T ss_pred CcccccCHHHHhhCC----CCc----eEEEEeee-ecCCceeEEEEEecC--CCCCeEEEEEeccCcc---cccccccHH
Confidence 446899998876664 453 45666666 455666666666798 4778899999999987 499999999
Q ss_pred eeE-----------------EEeeCccccccccHHHHHHHhHhhhcc-eEEEEEecC-CCCCccce--eeecChhHHHHH
Q psy9208 299 FIS-----------------GILWTAEEQGYVGAIAYVKKHQEELKN-ITVAMESDD-GTFTPFGL--SLKGSPEAACIL 357 (446)
Q Consensus 299 a~l-----------------f~~~~aEE~Gl~GS~~y~~~~~~~~~~-i~~~in~D~-g~~~~~~~--~~~gs~~l~~l~ 357 (446)
+++ |+|.. +.+||-.|+.++.+.+++ +++-+++.| |..+...+ ...|+..+.+++
T Consensus 152 ~v~~~La~~L~~~~~rytYRflf~P----eTIGsI~yLskn~~~l~~~v~~G~vLtcvGD~~~~syk~Sr~g~~~iDr~~ 227 (386)
T PF09940_consen 152 AVLTFLAKWLKQLPNRYTYRFLFVP----ETIGSITYLSKNLDELKKNVKAGLVLTCVGDDGAYSYKRSRRGNTLIDRAA 227 (386)
T ss_dssp HHHHHHHHHHTTS--SSEEEEEEE-----TTHHHHHHHHH-GGGGGG-EEEEEE--S--SSS-EEEE--TTSSSHHHHHH
T ss_pred HHHHHHHHHHhcCCcCceEEEEEcc----ccHHHHHHHHHCHHHHhhheeeeEEEEEecCCCCcceecCCCCCcHHHHHH
Confidence 887 88877 358999999999988876 999999999 44433222 335556677777
Q ss_pred HHHHHHhCCCCCccccCCCCCCCCchHhHHhCC--CeEEEeeeCCCCCCCCCcCCCCCcCCCCHHHHHHHHHHHHHHHHH
Q psy9208 358 NKVLRLFKPINATRLVQSKYPVGSDIELFQEKN--IPGVALLNDNAKYFWYHHTRADTMSVLDSDTLDLCTALWGGVAYI 435 (446)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~gSD~~~F~~~G--IP~~~l~~~~~~y~~~yHt~~Dt~d~ld~~~l~~~~~~~a~~~~~ 435 (446)
..+.+.. ..+.... +|...|||...|-.-| +|++.+.-..-.-+|-|||..|+++-|+++.|+.--.++..++-.
T Consensus 228 ~~vl~~~-~~~~~~~--~F~~~GsDERQfcSPG~dLPv~~~~Rs~yg~ypEYHTS~Dnl~fi~p~~L~~s~~~~~~~i~~ 304 (386)
T PF09940_consen 228 AHVLKHS-GPNFKIY--DFLPRGSDERQFCSPGFDLPVGSLMRSKYGEYPEYHTSLDNLDFISPEGLEGSFEVLLEAIEI 304 (386)
T ss_dssp HHHHHHS-SS-EEEE-----S-SSTHHHHTSTTT---EEEEESS-TT--TTTTBTTSSGGG--HHHHHHHHHHHHHHHHH
T ss_pred HHHHHhc-CCCceEe--cccccCCCcceeecCCcCCceeeeecccccCCcccccCCCccccCCHHHHHHHHHHHHHHHHH
Confidence 7777653 1222222 3323689999999765 999998764321138899999999999999999988777776655
Q ss_pred Hh
Q psy9208 436 LA 437 (446)
Q Consensus 436 lA 437 (446)
|-
T Consensus 305 lE 306 (386)
T PF09940_consen 305 LE 306 (386)
T ss_dssp HH
T ss_pred Hh
Confidence 53
No 10
>cd04819 PA_2 PA_2: Protease-associated (PA) domain subgroup 2. A subgroup of PA-domain containing proteins. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins in this group contain a C-terminal RING-finger domain. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases: such as hSPPL2a and 2b, ii) various E3 ubiquitin ligases similar to human GRAIL (gene related to anergy in lymphocytes) protein, iii) various proteins containing a RING finger motif such as Arabidopsis ReMembR-H2 protein, iv) EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein), v) various plant vacuola
Probab=99.28 E-value=5.6e-11 Score=102.78 Aligned_cols=83 Identities=30% Similarity=0.418 Sum_probs=63.0
Q ss_pred eccccEEEEecCCcCcchhhhhhhhhHHHHHHcCcEEEEEeccCCCCCCCCCCccccCC-CCCCCCCEeEcCHHHHHHHH
Q psy9208 155 EVAGKIVVFNQDFVSYGETVKYRSKGASVASKYGAVATLIRSVTPYSLATPHTGHQSYD-AAVKPIPTACIAPEYAEMLY 233 (446)
Q Consensus 155 ~v~GkIvlv~~~~~~yg~~~~~~~~~~~~A~~~GA~avii~~~~~~~~~~p~~g~~~~~-~~~~~iP~~~Is~~~~~~L~ 233 (446)
+++|||||++++.|. ..+..| +.+|.++||+|+|+|++.++. .++++...+. ...+.||+++|+.++|++|+
T Consensus 42 ~v~GkIvlv~~g~~~----~~~~~k-~~~A~~~GA~avi~~~~~~g~--~~~~~~~~~~~~~~~~IP~v~Is~edg~~L~ 114 (127)
T cd04819 42 DLEGKIAVVKRDDPD----VDRKEK-YAKAVAAGAAAFVVVNTVPGV--LPATGDEGTEDGPPSPIPAASVSGEDGLRLA 114 (127)
T ss_pred CCCCeEEEEEcCCCc----hhHHHH-HHHHHHCCCEEEEEEeCCCCc--CcccccccccCCCCCCCCEEEEeHHHHHHHH
Confidence 499999999998661 123334 999999999999999876553 2344443332 34568999999999999999
Q ss_pred HHHhCCCCceEE
Q psy9208 234 RMYRRGDGPVVV 245 (446)
Q Consensus 234 ~~l~~g~~pv~v 245 (446)
++++.|++ +.+
T Consensus 115 ~~l~~g~~-~~~ 125 (127)
T cd04819 115 RVAERNDT-LVL 125 (127)
T ss_pred HHHhcCCc-eEe
Confidence 99999986 544
No 11
>cd04816 PA_SaNapH_like PA_SaNapH_like: Protease-associated domain containing proteins like Streptomyces anulatus N-acetylpuromycin N-acetylhydrolase (SaNapH).This group contains various PA domain-containing proteins similar SaNapH. Proteins in this group belong to the peptidase M28 family. NapH is a terminal enzyme in the puromycin biosynthetic pathway; NapH hydrolyzes N-acetylpuromycin to the active antibiotic. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=99.25 E-value=4.5e-11 Score=102.67 Aligned_cols=90 Identities=20% Similarity=0.272 Sum_probs=64.4
Q ss_pred CCCCCCCcee-eccccEEEEecCCcCcchhhhhhhhhHHHHHHcCcEEEEEeccCCCCCCCCCCccccCCCCCCCCCEeE
Q psy9208 145 VGTPQGGITA-EVAGKIVVFNQDFVSYGETVKYRSKGASVASKYGAVATLIRSVTPYSLATPHTGHQSYDAAVKPIPTAC 223 (446)
Q Consensus 145 ~~t~~~gi~a-~v~GkIvlv~~~~~~yg~~~~~~~~~~~~A~~~GA~avii~~~~~~~~~~p~~g~~~~~~~~~~iP~~~ 223 (446)
.+|.+..+.+ +++|||||++++.|.|. .| ..+|.++||+|+|+||+.++.... ++.........||++.
T Consensus 30 ~gC~~~~~~~~~~~GkIvLv~rg~c~f~------~K-~~~A~~aGA~avIi~n~~~~~~~~---~~~~~~~~~~~iP~~~ 99 (122)
T cd04816 30 AGCDASDYDGLDVKGAIVLVDRGGCPFA------DK-QKVAAARGAVAVIVVNNSDGGGTA---GTLGAPNIDLKVPVGV 99 (122)
T ss_pred cCCCccccCCCCcCCeEEEEECCCCCHH------HH-HHHHHHCCCcEEEEEeCCCCcccc---ccccCCCCCCeeeEEE
Confidence 3465544443 48999999999987543 34 889999999999999876532111 1111011345699999
Q ss_pred cCHHHHHHHHHHHhCCCCceEE
Q psy9208 224 IAPEYAEMLYRMYRRGDGPVVV 245 (446)
Q Consensus 224 Is~~~~~~L~~~l~~g~~pv~v 245 (446)
|+.++|++|++++++|.+ +++
T Consensus 100 Is~~~G~~l~~~l~~g~~-v~~ 120 (122)
T cd04816 100 ITKAAGAALRRRLGAGET-LEL 120 (122)
T ss_pred EcHHHHHHHHHHHcCCCE-EEE
Confidence 999999999999999975 543
No 12
>cd02130 PA_ScAPY_like PA_ScAPY_like: Protease-associated domain containing proteins like Saccharomyces cerevisiae aminopeptidase Y (ScAPY). This group contains various PA domain-containing proteins similar to the S. cerevisiae APY, including Trichophyton rubrum leucine aminopeptidase 1(LAP1). Proteins in this group belong to the peptidase M28 family. ScAPY hydrolyzes amino acid-4-methylcoumaryl-7-amides (MCAs). ScAPY more rapidly hydrolyzes dipeptidyl-MCAs. Hydrolysis of amino acid-MCAs or dipeptides is stimulated by Co2+ while the hydrolysis of dipeptidyl-MCAs, tripeptides, and longer peptides is inhibited by Co2+. ScAPY is vacuolar and is activated by proteolytic processing. LAP1 is a secreted leucine aminopeptidase. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stab
Probab=99.19 E-value=1.3e-10 Score=99.73 Aligned_cols=89 Identities=25% Similarity=0.344 Sum_probs=65.8
Q ss_pred CCCCCCceeeccccEEEEecCCcCcchhhhhhhhhHHHHHHcCcEEEEEeccCCCCCCCCCCccccCCCCCCCCCEeEcC
Q psy9208 146 GTPQGGITAEVAGKIVVFNQDFVSYGETVKYRSKGASVASKYGAVATLIRSVTPYSLATPHTGHQSYDAAVKPIPTACIA 225 (446)
Q Consensus 146 ~t~~~gi~a~v~GkIvlv~~~~~~yg~~~~~~~~~~~~A~~~GA~avii~~~~~~~~~~p~~g~~~~~~~~~~iP~~~Is 225 (446)
+|.+.++..+++|||||++++.|.|. .| +.+|.++||+|+|+||+.+.. +..++... .....||++.|+
T Consensus 33 gC~~~~~~~~~~gkIvlv~rg~c~f~------~K-~~~A~~aGA~~vIv~n~~~~~---~~~~~~~~-~~~~~Ip~v~Is 101 (122)
T cd02130 33 GCDAADYPASVAGNIALIERGECPFG------DK-SALAGAAGAAAAIIYNNVPAG---GLSGTLGE-PSGPYVPTVGIS 101 (122)
T ss_pred CCCcccCCcCCCCEEEEEECCCCCHH------HH-HHHHHHCCCcEEEEEECCCCc---ccccccCC-CCCCEeeEEEec
Confidence 45555665569999999999987553 34 899999999999999876311 11111111 124579999999
Q ss_pred HHHHHHHHHHHhCCCCceEEE
Q psy9208 226 PEYAEMLYRMYRRGDGPVVVS 246 (446)
Q Consensus 226 ~~~~~~L~~~l~~g~~pv~v~ 246 (446)
.++|+.|++++++|++ ++++
T Consensus 102 ~~~G~~L~~~l~~g~~-v~~~ 121 (122)
T cd02130 102 QEDGKALVAALANGGE-VSAN 121 (122)
T ss_pred HHHHHHHHHHHhcCCc-EEEe
Confidence 9999999999999986 6544
No 13
>PF05450 Nicastrin: Nicastrin; InterPro: IPR008710 Nicastrin and presenilin are two major components of the gamma-secretase complex, which executes the intramembrane proteolysis of type I integral membrane proteins such as the amyloid precursor protein (APP) and Notch. Nicastrin is synthesised in fibroblasts and neurons as an endoglycosidase-H-sensitive glycosylated precursor protein (immature nicastrin) and is then modified by complex glycosylation in the Golgi apparatus and by sialylation in the trans-Golgi network (mature nicastrin) [].; GO: 0016485 protein processing, 0016021 integral to membrane
Probab=99.14 E-value=4.5e-10 Score=106.82 Aligned_cols=145 Identities=21% Similarity=0.316 Sum_probs=101.4
Q ss_pred cEEEEEecCCCCC----CCCCcccCCCceeeE----------------------EEeeCccccccccHHHHHHHhHhh--
Q psy9208 274 KVVITSGHLDSWD----VGQGAMDDGGGAFIS----------------------GILWTAEEQGYVGAIAYVKKHQEE-- 325 (446)
Q Consensus 274 ~~Vvl~aH~Ds~~----~g~Ga~DngsG~a~l----------------------f~~~~aEE~Gl~GS~~y~~~~~~~-- 325 (446)
++|++.|.+|+.. .+|||+++.+|.+++ |+||.||.+|.+||+.|+..+...
T Consensus 1 ~iIlv~armDs~s~F~~~s~GA~s~~sglvaLLaaA~aL~~~~~~~~~~~knV~F~~F~GEs~dYiGS~R~vyDm~~~~f 80 (234)
T PF05450_consen 1 PIILVVARMDSFSFFHDLSPGADSSVSGLVALLAAAEALSKLLPDSSNLNKNVLFAFFNGESFDYIGSSRFVYDMQNGNF 80 (234)
T ss_pred CEEEEEecccchhcccCCCCCcccchHHHHHHHHHHHHHHHhhhccccccCcEEEEEecCccccccchHHHHHHHHcCcC
Confidence 4899999999964 579999999999877 999999999999999999876521
Q ss_pred -----------hcceEEEEEecC-CCCCccceeee--c---C---hhHHHHHHHHHHHhCCCCCccc---c-CCCCCCCC
Q psy9208 326 -----------LKNITVAMESDD-GTFTPFGLSLK--G---S---PEAACILNKVLRLFKPINATRL---V-QSKYPVGS 381 (446)
Q Consensus 326 -----------~~~i~~~in~D~-g~~~~~~~~~~--g---s---~~l~~l~~~~~~~~~~~~~~~~---~-~~~~~~gS 381 (446)
+++|..+|.++. |......++.. . . .++.+++..+.+.......... . .+. .+-|
T Consensus 81 ~~~~~~~~~i~~~~I~~~IElgqvg~~~~~~l~~Hvd~~~~~~~~~~~~~~l~~~~~s~~~~~~~~~~~~~~~~~-LPPs 159 (234)
T PF05450_consen 81 PSDSLQFQPISLDNIDSVIELGQVGLSNSSGLYAHVDSPSNSSVANQVDEALDAAAKSLASSNIVIKKASSSNPP-LPPS 159 (234)
T ss_pred cccccccccccHHHCCEEEEeeccCCCCCCCEEEEecCCccchhhHHHHHHHHHHHHhccccccceeccccCCCC-CCcc
Confidence 248889999998 43333234322 1 1 1344555555544322111111 0 111 1346
Q ss_pred chHhHHhC--CCeEEEeeeCCCCC-CCCCcCCCCCcCCCCH
Q psy9208 382 DIELFQEK--NIPGVALLNDNAKY-FWYHHTRADTMSVLDS 419 (446)
Q Consensus 382 D~~~F~~~--GIP~~~l~~~~~~y-~~~yHt~~Dt~d~ld~ 419 (446)
-...|++. .||++-|...+..| .++||+..|+.+|+|.
T Consensus 160 S~~sFLr~~~~i~~vVLtd~~~~f~N~~y~S~~D~~~ni~~ 200 (234)
T PF05450_consen 160 SLQSFLRKDPNIPGVVLTDHDSQFTNKYYNSILDDAENINF 200 (234)
T ss_pred hHHHHHccCCCCCEEEecCCCcccccCCccCcccChhhhcC
Confidence 68889964 59999987766655 4789999999999987
No 14
>cd02126 PA_EDEM3_like PA_EDEM3_like: protease associated domain (PA) domain-containing EDEM3-like proteins. This group contains various PA domain-containing proteins similar to mouse EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein). EDEM3 contains a region, similar to Class I alpha-mannosidases (gylcosyl hydrolase family 47), N-terminal to the PA domain. EDEM3 accelerates glycoprotein ERAD (ER-associated degradation). In transfected mammalian cells, overexpression of EDEM3 enhances the mannose trimming from the N-glycans, of a model misfolded protein [alpha1-antitrypsin null (Hong Kong)] as well as, from total glycoproteins. Mannose trimming appears to be involved in the selection of ERAD substrates. EDEM3 has a different specificity of trimming than ER alpha-mannosidase 1. The significance of the PA domain to EDEM3 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or pr
Probab=99.05 E-value=7e-10 Score=95.73 Aligned_cols=93 Identities=18% Similarity=0.175 Sum_probs=66.5
Q ss_pred CCCCCCceeeccccEEEEecCCcCcchhhhhhhhhHHHHHHcCcEEEEEeccCCCCCC--CCCCccccCC--CCCCCCCE
Q psy9208 146 GTPQGGITAEVAGKIVVFNQDFVSYGETVKYRSKGASVASKYGAVATLIRSVTPYSLA--TPHTGHQSYD--AAVKPIPT 221 (446)
Q Consensus 146 ~t~~~gi~a~v~GkIvlv~~~~~~yg~~~~~~~~~~~~A~~~GA~avii~~~~~~~~~--~p~~g~~~~~--~~~~~iP~ 221 (446)
+|.+.....+++|||+|++|+.|.|. .| +.+|.++||+||||||+.++... .+...+.... .....||+
T Consensus 29 gC~~~~~~~~~~gkIaLv~RG~C~f~------~K-~~~Aq~aGA~avII~n~~~~~~~~~~~~~~m~~~~~~~~~~~IP~ 101 (126)
T cd02126 29 ACSEITNAEEVKGKIAIMERGDCMFV------EK-ARRVQKAGAIGGIVIDNNEGSSSDTAPMFAMSGDGDSTDDVTIPV 101 (126)
T ss_pred cccCCCCccccCceEEEEECCCCcHH------HH-HHHHHHCCCcEEEEEECCCCccccccceeEeecCCCCCCCCeEEE
Confidence 56555555568999999999988764 34 89999999999999987654210 1111010111 12457999
Q ss_pred eEcCHHHHHHHHHHHhCCCCceEEE
Q psy9208 222 ACIAPEYAEMLYRMYRRGDGPVVVS 246 (446)
Q Consensus 222 ~~Is~~~~~~L~~~l~~g~~pv~v~ 246 (446)
+.|+.++|+.|++++++|.. +++.
T Consensus 102 v~I~~~dG~~L~~~l~~~~~-~~~~ 125 (126)
T cd02126 102 VFLFSKEGSKLLAAIKEHQN-VEVL 125 (126)
T ss_pred EEEEHHHHHHHHHHHHhCCc-eEEe
Confidence 99999999999999999876 6544
No 15
>cd02129 PA_hSPPL_like PA_hSPPL_like: Protease-associated domain containing human signal peptide peptidase-like (hSPPL)-like. This group contains various PA domain-containing proteins similar to hSPPL2a and 2b. These SPPLs are GxGD aspartic proteases. SPPL2a is sorted to the late endosomes, SPPL2b to the plasma membrane. In activated dendritic cells, hSPPL2a and 2b catalyze the intramembrane proteolysis of tumor necrosis factor alpha triggering IL-12 production. hSPPL2a and 2b may have a broad substrate spectrum. The significance of the PA domain to these SPPLs has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=99.03 E-value=1.6e-09 Score=92.06 Aligned_cols=93 Identities=24% Similarity=0.299 Sum_probs=67.4
Q ss_pred eeEEecCCCCCCCCCCcee-eccccEEEEecCCcCcchhhhhhhhhHHHHHHcCcEEEEEeccCCCCCCCCCCccccCCC
Q psy9208 136 IPVSTLGGSVGTPQGGITA-EVAGKIVVFNQDFVSYGETVKYRSKGASVASKYGAVATLIRSVTPYSLATPHTGHQSYDA 214 (446)
Q Consensus 136 ~~~~~l~~s~~t~~~gi~a-~v~GkIvlv~~~~~~yg~~~~~~~~~~~~A~~~GA~avii~~~~~~~~~~p~~g~~~~~~ 214 (446)
++..-...+.+|.+.++.. +++|||+||+||.|.|. .| +.+|.++||+||||||+.+.. .|. +..+ ..
T Consensus 22 ~~~~~~~~~~gC~~~~~~~~~l~gkIaLV~RG~CsF~------~K-~~~Aq~aGA~aVII~nn~~~~--~~~-~~~~-~~ 90 (120)
T cd02129 22 LPLRNLTSSVLCSASDVPPGGLKGKAVVVMRGNCTFY------EK-ARLAQSLGAEGLLIVSRERLV--PPS-GNRS-EY 90 (120)
T ss_pred eeeecCCCcCCCCccccCccccCCeEEEEECCCcCHH------HH-HHHHHHCCCCEEEEEECCCCC--CCC-CCCC-CC
Confidence 3444444445788877753 69999999999988664 35 899999999999999986521 121 1111 11
Q ss_pred CCCCCCEeEcCHHHHHHHHHHHhCC
Q psy9208 215 AVKPIPTACIAPEYAEMLYRMYRRG 239 (446)
Q Consensus 215 ~~~~iP~~~Is~~~~~~L~~~l~~g 239 (446)
....||++.|++++|+.|++.+..+
T Consensus 91 ~~v~IP~v~Is~~dG~~i~~~l~~~ 115 (120)
T cd02129 91 EKIDIPVALLSYKDMLDIQQTFGDS 115 (120)
T ss_pred cCCcccEEEEeHHHHHHHHHHhccC
Confidence 3457999999999999999988644
No 16
>cd02127 PA_hPAP21_like PA_hPAP21_like: Protease-associated domain containing proteins like the human secreted glycoprotein hPAP21 (human protease-associated domain-containing protein, 21kDa). This group contains various PA domain-containing proteins similar to hPAP21. Complex N-glycosylation may be required for the secretion of hPAP21. The significance of the PA domain to hPAP21 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=98.99 E-value=2.4e-09 Score=91.22 Aligned_cols=91 Identities=20% Similarity=0.131 Sum_probs=63.8
Q ss_pred CCCCCCceeeccccEEEEecCCcCcchhhhhhhhhHHHHHHcCcEEEEEeccCCCCCCCCCCccccC-CCCCCCCCEeEc
Q psy9208 146 GTPQGGITAEVAGKIVVFNQDFVSYGETVKYRSKGASVASKYGAVATLIRSVTPYSLATPHTGHQSY-DAAVKPIPTACI 224 (446)
Q Consensus 146 ~t~~~gi~a~v~GkIvlv~~~~~~yg~~~~~~~~~~~~A~~~GA~avii~~~~~~~~~~p~~g~~~~-~~~~~~iP~~~I 224 (446)
+|.+-....+++|||+|++|+.|.|. .| +.+|.++||+|||||++.+... .+....... ......||++.|
T Consensus 23 gC~~~~~~~~~~g~I~Lv~RG~C~F~------~K-~~~Aq~aGA~avII~n~~~~~~-~~~~~m~~~~~~~~i~IP~v~I 94 (118)
T cd02127 23 ACEELRNIHDINGNIALIERGGCSFL------TK-AINAQKAGALAVIITDVNNDSD-EYYVEMIQDDSSRRADIPAAFL 94 (118)
T ss_pred cCCCCCCccccCCeEEEEECCCCCHH------HH-HHHHHHCCCcEEEEEECCCCcc-ccceEecCCCCCCCceEEEEEe
Confidence 45443334468999999999988664 34 8999999999999998754311 110000000 123457999999
Q ss_pred CHHHHHHHHHHHhCCCCceEE
Q psy9208 225 APEYAEMLYRMYRRGDGPVVV 245 (446)
Q Consensus 225 s~~~~~~L~~~l~~g~~pv~v 245 (446)
++++|+.|++.++.|.. +.+
T Consensus 95 s~~dG~~L~~~l~~g~~-~~~ 114 (118)
T cd02127 95 LGKNGYMIRKTLERLGL-PYA 114 (118)
T ss_pred cHHHHHHHHHHHHcCCc-eEE
Confidence 99999999999999875 443
No 17
>cd02132 PA_GO-like PA_GO-like: Protease-associated domain containing proteins like Arabidopsis thaliana growth-on protein GRO10. This group contains various PA domain-containing proteins similar to the functionally uncharacterized Arabidopsis GRO10. The PA domain may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=98.97 E-value=2.3e-09 Score=94.11 Aligned_cols=82 Identities=21% Similarity=0.221 Sum_probs=61.4
Q ss_pred eccccEEEEecCCcCcchhhhhhhhhHHHHHHcCcEEEEEeccCCCCCCCCCCccccCCCCCCCCCEeEcCHHHHHHHHH
Q psy9208 155 EVAGKIVVFNQDFVSYGETVKYRSKGASVASKYGAVATLIRSVTPYSLATPHTGHQSYDAAVKPIPTACIAPEYAEMLYR 234 (446)
Q Consensus 155 ~v~GkIvlv~~~~~~yg~~~~~~~~~~~~A~~~GA~avii~~~~~~~~~~p~~g~~~~~~~~~~iP~~~Is~~~~~~L~~ 234 (446)
+++||||||+|+.|.|. .| +.+|.++||+|||||++.+.. .+..+..........||++.|+.++|++|++
T Consensus 57 ~~~g~IvLV~RG~C~F~------~K-~~nA~~aGA~avIv~n~~~~~--~~~~~~~~~~~~~~~IP~v~Is~~~G~~L~~ 127 (139)
T cd02132 57 KLSGSIALVERGECAFT------EK-AKIAEAGGASALLIINDQEEL--YKMVCEDNDTSLNISIPVVMIPQSAGDALNK 127 (139)
T ss_pred ccCCeEEEEECCCCCHH------HH-HHHHHHcCCcEEEEEECCCcc--cccccCCCCCCCCCcEeEEEecHHHHHHHHH
Confidence 58999999999988664 34 999999999999999876431 1111111111224579999999999999999
Q ss_pred HHhCCCCceEEE
Q psy9208 235 MYRRGDGPVVVS 246 (446)
Q Consensus 235 ~l~~g~~pv~v~ 246 (446)
++++|.+ ++++
T Consensus 128 ~l~~g~~-Vtv~ 138 (139)
T cd02132 128 SLDQGKK-VEVL 138 (139)
T ss_pred HHHcCCc-EEEe
Confidence 9999976 6544
No 18
>cd04817 PA_VapT_like PA_VapT_like: Protease-associated domain containing proteins like VapT from Vibrio metschnikovii strain RH530. This group contains various PA domain-containing proteins similar to V. metschnikovii VapT, including the serine alkaline protease SapSh from the psychotroph Shewanella strain Ac10 and the Apa1 protease from the psychrotroph Pseudoalteromonas Sp. As-11. VapT is a sodium dodecyl sulfate (SDS) resistant extracellular alkaline serine protease showing high activity over a broad pH range and temperature. SapSh has a high level of protease activity at low temperatures. Apa1 is also cold-adapted. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=98.96 E-value=2.1e-09 Score=93.81 Aligned_cols=79 Identities=18% Similarity=0.175 Sum_probs=57.1
Q ss_pred eccccEEEEecCCcCcchhhhhhhhhHHHHHHcCcEEEEEeccC--CCCCCCCCCccccCCCCCCCCCEeEcCHHHHHHH
Q psy9208 155 EVAGKIVVFNQDFVSYGETVKYRSKGASVASKYGAVATLIRSVT--PYSLATPHTGHQSYDAAVKPIPTACIAPEYAEML 232 (446)
Q Consensus 155 ~v~GkIvlv~~~~~~yg~~~~~~~~~~~~A~~~GA~avii~~~~--~~~~~~p~~g~~~~~~~~~~iP~~~Is~~~~~~L 232 (446)
+++|||+||+|+.|.-+ ..+|..| +.+|.++||+||||||+. ++.. .+ .+........||++.|++++|++|
T Consensus 54 d~~GkIaLI~RG~c~~~-~~~f~~K-v~~A~~aGA~avIIyNn~~~~g~~-~~---~lg~~~~~~~IP~v~is~~dG~~L 127 (139)
T cd04817 54 GMAGKICLIERGGNSKS-VYPEIDK-VKACQNAGAIAAIVYSNAALAGLQ-NP---FLVDTNNDTTIPSVSVDRADGQAL 127 (139)
T ss_pred CcCccEEEEECCCCCCC-cccHHHH-HHHHHHCCCeEEEEEeCCCCCCcc-cc---cccCCCCCceEeEEEeeHHHHHHH
Confidence 58999999999988611 0113445 999999999999999987 4321 11 111112245899999999999999
Q ss_pred HHHHhCC
Q psy9208 233 YRMYRRG 239 (446)
Q Consensus 233 ~~~l~~g 239 (446)
++++..+
T Consensus 128 ~~~l~~~ 134 (139)
T cd04817 128 LAALGQS 134 (139)
T ss_pred HHHhcCC
Confidence 9998544
No 19
>cd02122 PA_GRAIL_like PA _GRAIL_like: Protease-associated (PA) domain GRAIL-like. This group includes PA domain containing E3 (ubiquitin ligases) similar to human GRAIL (gene related to anergy in lymphocytes) protein. Proteins in this group contain a C3H2C3 RING finger. E3 ubiquitin ligase is part of an enzymic cascade, the end result of which is the ubiquitination of proteins. In this cascade, E1 activates the ubiquitin, the activated ubiquitin is carried by E2, and E3 recognizes the acceptor protein as well as catalyzes the transfer of the activated ubiquitin from E2 to this acceptor. GRAIL, a transmembrane protein localized in the endosomes, controls the development of T cell clonal anergy, and may ubiquitinate membrane-associated targets for T cell activation. GRAIL1 is associated with, and regulated by, two isoforms of otubain 1 (the ubiquitin-specific protease). Additional E3s belonging to this group include human (h)Goliath and Xenopus GREUL1 (Goliath Related E3 Ubiquitin Ligase
Probab=98.91 E-value=7.1e-09 Score=90.74 Aligned_cols=81 Identities=15% Similarity=0.128 Sum_probs=60.8
Q ss_pred eeccccEEEEecCCcCcchhhhhhhhhHHHHHHcCcEEEEEeccCCCCCCCCCCccccCCCCCCCCCEeEcCHHHHHHHH
Q psy9208 154 AEVAGKIVVFNQDFVSYGETVKYRSKGASVASKYGAVATLIRSVTPYSLATPHTGHQSYDAAVKPIPTACIAPEYAEMLY 233 (446)
Q Consensus 154 a~v~GkIvlv~~~~~~yg~~~~~~~~~~~~A~~~GA~avii~~~~~~~~~~p~~g~~~~~~~~~~iP~~~Is~~~~~~L~ 233 (446)
.+++|+||||+|+.|.|. .| +.+|.++||++||||++.+........+ .+....||++.|+.++|+.|+
T Consensus 57 ~~~~g~IaLV~RG~C~F~------~K-~~nA~~aGA~aVIIyn~~~~~~~~~~m~----~~~~~~ip~v~Is~~~G~~l~ 125 (138)
T cd02122 57 PNGEPWIALIQRGNCTFE------EK-IKLAAERNASAVVIYNNPGTGNETVKMS----HPGTGDIVAIMITNPKGMEIL 125 (138)
T ss_pred ccCCCeEEEEECCCCCHH------HH-HHHHHHCCCcEEEEEECCCCCCceeecc----CCCCCcceEEEEcHHHHHHHH
Confidence 358899999999988664 34 8999999999999999865210000111 122347999999999999999
Q ss_pred HHHhCCCCceEEE
Q psy9208 234 RMYRRGDGPVVVS 246 (446)
Q Consensus 234 ~~l~~g~~pv~v~ 246 (446)
+++++|++ ++++
T Consensus 126 ~~l~~G~~-Vtv~ 137 (138)
T cd02122 126 ELLERGIS-VTMV 137 (138)
T ss_pred HHHHcCCc-EEEe
Confidence 99999986 6544
No 20
>cd02128 PA_TfR PA_TfR: Protease-associated domain containing proteins like transferrin receptor (TfR). This group contains various PA domain-containing proteins similar to human TfR1 and TfR2. TfR1 and TfR2 are type II membrane proteins, belonging to the peptidase M28 family. TfR1 is homodimeric, widely expressed, and a key player in the uptake of iron-loaded transferrin (Tf) into cells. The TfR1 homodimer binds two molecules of Tf and this complex is internalized. In addition to its role in iron uptake, TfR1 may participate in cell growth and proliferation. TfR2 also binds Tf but with a significantly lower affinity than does TfR1. TfR2 is expressed chiefly in hepatocytes, hematopoietic cells, and duodenal crypt cells; its expression overlaps with that of hereditary hemochromatosis protein (HFE). TfR2 is involved in iron homeostasis. HFE and TfR2 interact in cells. By one model for serum iron sensing, at low or basal iron concentrations, HFE and TFR1 form a complex at the plasma membra
Probab=98.89 E-value=8.2e-09 Score=93.85 Aligned_cols=78 Identities=28% Similarity=0.393 Sum_probs=54.4
Q ss_pred eccccEEEEecCCcCcchhhhhhhhhHHHHHHcCcEEEEEeccCCCC----------------CCCCCC-ccccC-----
Q psy9208 155 EVAGKIVVFNQDFVSYGETVKYRSKGASVASKYGAVATLIRSVTPYS----------------LATPHT-GHQSY----- 212 (446)
Q Consensus 155 ~v~GkIvlv~~~~~~yg~~~~~~~~~~~~A~~~GA~avii~~~~~~~----------------~~~p~~-g~~~~----- 212 (446)
+++|||||++++.|.++ .| +.+|.++||+|||+|++.... ...|.| |+.+.
T Consensus 53 ~v~GkIvLvr~G~~~~~------~K-v~~A~~~GA~gvIiy~Dp~d~~~~~~~~~~~g~~~~~~GDplTPG~ps~~~~~~ 125 (183)
T cd02128 53 SVNGSVVLVRAGKISFA------EK-VANAEKLGAVGVLIYPDPADFPIDPSETALFGHVHLGTGDPYTPGFPSFNHTQF 125 (183)
T ss_pred CCCCeEEEEECCCCCHH------HH-HHHHHHCCCEEEEEecCHHHcCcccCcceeecceeccCCCcCCCCCcccccccc
Confidence 48999999998876433 34 999999999999999873110 001111 11111
Q ss_pred --C--CCCCCCCEeEcCHHHHHHHHHHHhCCC
Q psy9208 213 --D--AAVKPIPTACIAPEYAEMLYRMYRRGD 240 (446)
Q Consensus 213 --~--~~~~~iP~~~Is~~~~~~L~~~l~~g~ 240 (446)
. ...++||++.||+++|+.|++.|. |+
T Consensus 126 ~~~~~~~lP~IPs~PIS~~da~~lL~~l~-G~ 156 (183)
T cd02128 126 PPSQSSGLPNIPAQTISAAAAAKLLSKMG-GP 156 (183)
T ss_pred CcccccCCCCCCEeccCHHHHHHHHHHcC-CC
Confidence 0 135789999999999999999984 54
No 21
>cd02125 PA_VSR PA_VSR: Protease-associated (PA) domain-containing plant vacuolar sorting receptor (VSR). This group includes various PA domain-containing VSRs such as garden pea BP-80, pumpkin PV72, and various Arabidopsis VSRs including AtVSR1. In contrast to most eukaryotes, which only have one or two VSRs, plants have several. This may in part be a reflection of having a more complex vacuolar system with both lytic vacuoles and storage vacuoles. The lytic vacuole is thought to be equivalent to the mammalian lysosome and the yeast vacuole. Pea BP-80 is a type 1 transmembrane protein, involved in the targeting of proteins to the lytic vacuole; it has been suggested that this protein also mediates targeting to the storage vacuole. PV72 and AtVSR1 may mediate transport of seed storage proteins to protein storage vacuoles. The significance of the PA domain to VSRs has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may partic
Probab=98.82 E-value=1.8e-08 Score=86.91 Aligned_cols=82 Identities=26% Similarity=0.312 Sum_probs=60.4
Q ss_pred ccccEEEEecCCcCcchhhhhhhhhHHHHHHcCcEEEEEeccCCCCCCCC---C-CccccCCCCCCCCCEeEcCHHHHHH
Q psy9208 156 VAGKIVVFNQDFVSYGETVKYRSKGASVASKYGAVATLIRSVTPYSLATP---H-TGHQSYDAAVKPIPTACIAPEYAEM 231 (446)
Q Consensus 156 v~GkIvlv~~~~~~yg~~~~~~~~~~~~A~~~GA~avii~~~~~~~~~~p---~-~g~~~~~~~~~~iP~~~Is~~~~~~ 231 (446)
..+|||||+|+.|.|. .| +.+|.++||+++|||++.+...... . .+...+ .....||++.|+.++|+.
T Consensus 41 ~~~~IvLv~RG~C~F~------~K-~~~Aq~aGA~avII~n~~~~~~~~m~~~~~~~~~~~-~~~i~IP~v~Is~~~G~~ 112 (127)
T cd02125 41 RRPVILLLDRGGCFFT------LK-AWNAQQAGAAAVLVADNVDEPLLTMDTPEESGSADY-IEKITIPSALITKAFGEK 112 (127)
T ss_pred CCceEEEEECCCcCHH------HH-HHHHHHCCCcEEEEEECCCCccccccCccccccccc-CCCceEeEEEECHHHHHH
Confidence 6789999999988665 34 8999999999999999865421110 0 011111 123469999999999999
Q ss_pred HHHHHhCCCCceEEE
Q psy9208 232 LYRMYRRGDGPVVVS 246 (446)
Q Consensus 232 L~~~l~~g~~pv~v~ 246 (446)
|++++++|.. |+++
T Consensus 113 L~~~l~~g~~-V~v~ 126 (127)
T cd02125 113 LKKAISNGEM-VVIK 126 (127)
T ss_pred HHHHHhcCCe-EEEe
Confidence 9999999986 6544
No 22
>cd02124 PA_PoS1_like PA_PoS1_like: Protease-associated (PA) domain PoS1-like. This group includes various PA domain-containing proteins similar to Pleurotus ostreatus (Po)S1. PoSl, the main extracellular protease in P. ostreatus is a subtilisin-like serine protease belonging to the peptidase S8 family. Ca2+ and Mn2+ both stimulate the protease activity of (Po)S1. Ca2+ protects PoS1 from autolysis. PoS1 is a monomeric glycoprotein, which may play a role in the regulation of laccases in lignin formation. (Po)S1 participates in the degradation of POXA1b, and in the activation of POXA3, (POXA1b and POXA3 are laccase isoenzymes), but its effect may be indirect. The significance of the PA domain to PoS1 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=98.76 E-value=5.2e-08 Score=84.31 Aligned_cols=76 Identities=24% Similarity=0.282 Sum_probs=56.8
Q ss_pred eccccEEEEecCCcCcchhhhhhhhhHHHHHHcCcEEEEEeccCCCCCCCCCCccccCCCCCCCCCEeEcCHHHHHHHHH
Q psy9208 155 EVAGKIVVFNQDFVSYGETVKYRSKGASVASKYGAVATLIRSVTPYSLATPHTGHQSYDAAVKPIPTACIAPEYAEMLYR 234 (446)
Q Consensus 155 ~v~GkIvlv~~~~~~yg~~~~~~~~~~~~A~~~GA~avii~~~~~~~~~~p~~g~~~~~~~~~~iP~~~Is~~~~~~L~~ 234 (446)
+++||||||+|+.|.|. .| +.+|.++||++||||++.++.+.. . ......+|.+.+ +++|++|++
T Consensus 53 ~~~g~IaLv~rg~c~f~------~K-~~nA~~aGA~aviiyn~~~~~~~~----~---~~~~~~~~~~~~-~~~G~~l~~ 117 (129)
T cd02124 53 DLSGYIVLVRRGTCTFA------TK-AANAAAKGAKYVLIYNNGSGPTDQ----V---GSDADSIIAAVT-PEDGEAWID 117 (129)
T ss_pred cccCeEEEEECCCCCHH------HH-HHHHHHcCCcEEEEEECCCCcccc----c---CCCCcceeeEEe-HHHHHHHHH
Confidence 58999999999987654 35 899999999999999876543211 1 112234666666 999999999
Q ss_pred HHhCCCCceEEE
Q psy9208 235 MYRRGDGPVVVS 246 (446)
Q Consensus 235 ~l~~g~~pv~v~ 246 (446)
++++|+. ++++
T Consensus 118 ~l~~G~~-vtv~ 128 (129)
T cd02124 118 ALAAGSN-VTVD 128 (129)
T ss_pred HHhcCCe-EEEe
Confidence 9999976 5543
No 23
>cd00538 PA PA: Protease-associated (PA) domain. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases including, hSPPL2a and 2b which catalyze the intramembrane proteolysis of tumor necrosis factor alpha, ii) various proteins containing a C3H2C3 RING finger including, Arabidopsis ReMembR-H2 protein and various E3 ubiquitin ligases such as human GRAIL (gene related to anergy in lymphocytes), iii) EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein), iv) various plant vacuolar sorting receptors such as Pisum sativum BP-80, v) g
Probab=98.76 E-value=4.1e-08 Score=84.10 Aligned_cols=82 Identities=29% Similarity=0.371 Sum_probs=59.5
Q ss_pred eccccEEEEecCCcCcchhhhhhhhhHHHHHHcCcEEEEEeccCCCCCCCCCCccccCCCCCCCCCEeEcCHHHHHHHHH
Q psy9208 155 EVAGKIVVFNQDFVSYGETVKYRSKGASVASKYGAVATLIRSVTPYSLATPHTGHQSYDAAVKPIPTACIAPEYAEMLYR 234 (446)
Q Consensus 155 ~v~GkIvlv~~~~~~yg~~~~~~~~~~~~A~~~GA~avii~~~~~~~~~~p~~g~~~~~~~~~~iP~~~Is~~~~~~L~~ 234 (446)
+++|||||++++.|. +..| +.+|.++||+|+|++++.+.. .+.............||++.|+.++|++|++
T Consensus 44 ~~~GkIvl~~~g~~~------~~~k-~~~a~~~GA~gvii~~~~~~~--~~~~~~~~~~~~~~~iP~~~is~~~g~~l~~ 114 (126)
T cd00538 44 DVKGKIVLVRRGGCS------FSEK-VKNAQKAGAKAVIIYNNGDDP--GPQMGSVGLESTDPSIPTVGISYADGEALLS 114 (126)
T ss_pred CccceEEEEECCCcC------HHHH-HHHHHHCCCEEEEEEECCCCc--ccccccccCCCCCCcEeEEEeCHHHHHHHHH
Confidence 489999999988764 3345 889999999999999876421 1111111111234569999999999999999
Q ss_pred HHhCCCCceEEE
Q psy9208 235 MYRRGDGPVVVS 246 (446)
Q Consensus 235 ~l~~g~~pv~v~ 246 (446)
.+++|++ ++++
T Consensus 115 ~~~~~~~-v~~~ 125 (126)
T cd00538 115 LLEAGKT-VTVD 125 (126)
T ss_pred HHhcCCc-eEEe
Confidence 9999876 5543
No 24
>cd04818 PA_subtilisin_1 PA_subtilisin_1: Protease-associated domain containing subtilisin-like proteases, subgroup 1. A subgroup of PA domain-containing subtilisin-like proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following subtilisin-like proteases: i) melon cucumisin, ii) Arabidopsis thaliana Ara12, iii) Alnus glutinosa ag12, iv) members of the tomato P69 family, and v) tomato LeSBT2. However, these proteins belong to other subtilisin-like subgroups. Relatively little is known about proteins in this subgroup.
Probab=98.75 E-value=5e-08 Score=83.16 Aligned_cols=89 Identities=22% Similarity=0.265 Sum_probs=63.5
Q ss_pred CCCCCCceeeccccEEEEecCCcCcchhhhhhhhhHHHHHHcCcEEEEEeccCCCCCCCCCCccccCCCCCCCCCEeEcC
Q psy9208 146 GTPQGGITAEVAGKIVVFNQDFVSYGETVKYRSKGASVASKYGAVATLIRSVTPYSLATPHTGHQSYDAAVKPIPTACIA 225 (446)
Q Consensus 146 ~t~~~gi~a~v~GkIvlv~~~~~~yg~~~~~~~~~~~~A~~~GA~avii~~~~~~~~~~p~~g~~~~~~~~~~iP~~~Is 225 (446)
.|.+.....+++|||||++++.|.| ..| ..+|.++||+|+|+|++.+..... ..+ .......||++.|+
T Consensus 29 ~C~~~~~~~~v~GkIvL~~rg~c~f------~~k-~~~a~~aGA~gvIi~~~~~~~~~~-~~~---~~~~~~~iP~v~V~ 97 (118)
T cd04818 29 GCTAFTNAAAFAGKIALIDRGTCNF------TVK-VLNAQNAGAIAVIVANNVAGGAPI-TMG---GDDPDITIPAVMIS 97 (118)
T ss_pred ccCCCCcCCCCCCEEEEEECCCCCH------HHH-HHHHHHCCCeEEEEEECCCCCcce-ecc---CCCCCCEEeEEEec
Confidence 3555444445899999999987644 334 889999999999999876531111 111 11123469999999
Q ss_pred HHHHHHHHHHHhCCCCceEEE
Q psy9208 226 PEYAEMLYRMYRRGDGPVVVS 246 (446)
Q Consensus 226 ~~~~~~L~~~l~~g~~pv~v~ 246 (446)
.++|+.|++.+++|.+ ++++
T Consensus 98 ~~~g~~l~~~l~~g~~-v~v~ 117 (118)
T cd04818 98 QADGDALKAALAAGGT-VTVT 117 (118)
T ss_pred HHHHHHHHHHHhcCCc-EEEe
Confidence 9999999999998876 6554
No 25
>cd02131 PA_hNAALADL2_like PA_hNAALADL2_like: Protease-associated domain containing proteins like human N-acetylated alpha-linked acidic dipeptidase-like 2 protein (hNAALADL2). This group contains various PA domain-containing proteins similar to hNAALADL2. The function of hNAALADL2 is unknown. This gene has been mapped to a chromosomal region associated with Cornelia de Lange syndrome. The significance of the PA domain to hNAALADL2 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=98.72 E-value=4.9e-08 Score=85.32 Aligned_cols=75 Identities=16% Similarity=0.051 Sum_probs=51.9
Q ss_pred eccccEEEEecCCcCcchhhhhhhhhHHHHHHcCcEEEEEeccCCCC-----------------CCCCCC-ccccC----
Q psy9208 155 EVAGKIVVFNQDFVSYGETVKYRSKGASVASKYGAVATLIRSVTPYS-----------------LATPHT-GHQSY---- 212 (446)
Q Consensus 155 ~v~GkIvlv~~~~~~yg~~~~~~~~~~~~A~~~GA~avii~~~~~~~-----------------~~~p~~-g~~~~---- 212 (446)
+|+|||||++.+.. ||..|+.+|+++||+|||||++.... ...|.| |+.+.
T Consensus 38 ~v~GkIvi~RyG~~-------~RG~Kv~~A~~~GA~GviIYsDP~d~~~~~~~~~~v~~v~~~~~GDP~TPG~PS~~~~~ 110 (153)
T cd02131 38 NVTNQIALLKLGQA-------PLLYKLSLLEEAGFGGVLLYVDPCDLPKTRHTWHQAFMVSLNPGGDPSTPGYPSADQSC 110 (153)
T ss_pred CccceEEEEeccCc-------chHHHHHHHHHCCCeEEEEecChhhccCcCCCccceEEEecCCCCCCCCCCCccccCcc
Confidence 38999999865532 45556999999999999999873110 011111 11111
Q ss_pred ---CCCCCCCCEeEcCHHHHHHHHHHH
Q psy9208 213 ---DAAVKPIPTACIAPEYAEMLYRMY 236 (446)
Q Consensus 213 ---~~~~~~iP~~~Is~~~~~~L~~~l 236 (446)
....+.||+..||.++|..|++.-
T Consensus 111 R~~~~~lP~IPs~PIS~~dA~~lL~~~ 137 (153)
T cd02131 111 RQCRGNLTSLLVQPISAYLAKKLLSAP 137 (153)
T ss_pred cCCcCCCCCCcccccCHHHHHHHHhCC
Confidence 124678999999999999999864
No 26
>cd02121 PA_GCPII_like PA_GCPII_like: Protease-associated domain containing protein, glutamate carboxypeptidase II (GCPII)-like. This group contains various PA domain-containing proteins similar to GCPII including, GCPIII (NAALADase2) and NAALADase L. These proteins belong to the peptidase M28 family. GCPII is also known N-acetylated-alpha-linked acidic dipeptidase (NAALDase1), folate hydrolase or prostate-specific membrane antigen (PSMA). GCPII is found in various human tissues including prostate, small intestine, and the central nervous system. In the brain, GCPII is known as NAALDase1, it functions as a NAALDase hydrolyzing the neuropeptide N-acetyl-L-aspartyl-L-glutamate (alpha-NAAG), to release free glutamate. In the small intestine, GCPII releases the terminal glutamate from poly-gamma-glutamated folates. GCPII (PSMA) is a useful cancer marker; its expression is markedly increased in prostate cancer and in tumor-associated neovasculature. GCPIII hydrolyzes alpha-NAAG with a lower
Probab=98.65 E-value=9.9e-08 Score=89.62 Aligned_cols=76 Identities=32% Similarity=0.359 Sum_probs=54.5
Q ss_pred eccccEEEEecCCcCcchhhhhhhhhHHHHHHcCcEEEEEeccC--------------CCCCCCCCCcccc---------
Q psy9208 155 EVAGKIVVFNQDFVSYGETVKYRSKGASVASKYGAVATLIRSVT--------------PYSLATPHTGHQS--------- 211 (446)
Q Consensus 155 ~v~GkIvlv~~~~~~yg~~~~~~~~~~~~A~~~GA~avii~~~~--------------~~~~~~p~~g~~~--------- 211 (446)
+++|||||++.+.+. +..|+.+|+++||+|||+|++. |..++.|..+.++
T Consensus 69 dv~GKIvLvr~G~~~-------~~~Kv~~A~~~GA~gVIiy~Dp~d~~~~~~~~~~~yP~g~~~~~~~vqRgsv~~~~~~ 141 (220)
T cd02121 69 DVKGKIVIARYGGIF-------RGLKVKNAQLAGAVGVIIYSDPADDGYITGENGKTYPDGPARPPSGVQRGSVLFMSIG 141 (220)
T ss_pred CCCCeEEEEECCCcc-------HHHHHHHHHHcCCEEEEEEeCchhcccccccccccCCCCCCCCCCcceecceeccccC
Confidence 599999999887652 2234999999999999999863 2222223222221
Q ss_pred --------C---------C----CCCCCCCEeEcCHHHHHHHHHHHh
Q psy9208 212 --------Y---------D----AAVKPIPTACIAPEYAEMLYRMYR 237 (446)
Q Consensus 212 --------~---------~----~~~~~iP~~~Is~~~~~~L~~~l~ 237 (446)
| . ...++||++.||.++|+.|++.|.
T Consensus 142 ~GDplTPG~ps~~~~~r~~~~~~~~lP~IPs~PIS~~da~~lL~~L~ 188 (220)
T cd02121 142 PGDPLTPGYPSKPGAERRDKEESKGLPKIPSLPISYRDAQPLLKALG 188 (220)
T ss_pred CCCCCCCCCCCCCCCcccCcccccCCCCCCcccCCHHHHHHHHHHcC
Confidence 0 0 135789999999999999999986
No 27
>PF02225 PA: PA domain; InterPro: IPR003137 The PA (Protease associated) domain is found as an insert domain in diverse proteases, which include the MEROPS peptidase families A22B, M28, and S8A []. The PA domain is also found in a plant vacuolar sorting receptor O22925 from SWISSPROT and members of the RZF family, e.g. O43567 from SWISSPROT.; PDB: 3EIF_A 1XF1_B 3BXM_A 2C6P_A 1Z8L_C 3SJF_A 3BHX_A 2C6G_A 3D7F_A 2XEG_A ....
Probab=98.64 E-value=8.7e-08 Score=78.89 Aligned_cols=71 Identities=30% Similarity=0.346 Sum_probs=50.3
Q ss_pred eccccEEEEecCCcCcchhhhhhhhhHHHHHHcCcEEEEEeccCCCCCCCCCCccccCCCCCCCCCEeEcCHHHHHHHHH
Q psy9208 155 EVAGKIVVFNQDFVSYGETVKYRSKGASVASKYGAVATLIRSVTPYSLATPHTGHQSYDAAVKPIPTACIAPEYAEMLYR 234 (446)
Q Consensus 155 ~v~GkIvlv~~~~~~yg~~~~~~~~~~~~A~~~GA~avii~~~~~~~~~~p~~g~~~~~~~~~~iP~~~Is~~~~~~L~~ 234 (446)
+++|||||++++.|.|. .| +.+|.++||+|+|+++..+.. .... .........||++.|+.++|++|++
T Consensus 31 ~~~gkIvlv~rg~~~~~------~k-~~~a~~~GA~gvIi~~~~~~~--~~~~--~~~~~~~~~iP~v~I~~~~g~~L~~ 99 (101)
T PF02225_consen 31 DVKGKIVLVERGSCSFD------DK-VRNAQKAGAKGVIIYNPPPNN--GSMI--DSEDPDPIDIPVVFISYEDGEALLA 99 (101)
T ss_dssp TCTTSEEEEESTSSCHH------HH-HHHHHHTTESEEEEE-TSCSC--TTTT--CEBTTTSTBSEEEEE-HHHHHHHHH
T ss_pred cccceEEEEecCCCCHH------HH-HHHHHHcCCEEEEEEeCCccc--cCcc--cccCCCCcEEEEEEeCHHHHhhhhc
Confidence 48999999999987553 34 899999999999999921111 1111 1112345679999999999999998
Q ss_pred HH
Q psy9208 235 MY 236 (446)
Q Consensus 235 ~l 236 (446)
++
T Consensus 100 ~i 101 (101)
T PF02225_consen 100 YI 101 (101)
T ss_dssp HH
T ss_pred cC
Confidence 64
No 28
>cd04813 PA_1 PA_1: Protease-associated (PA) domain subgroup 1. A subgroup of PA-domain containing proteins. Proteins in this subgroup contain a RING-finger (Really Interesting New Gene) domain C-terminal to this PA domain. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins in this group contain a C-terminal RING-finger domain. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases: such as hSPPL2a and 2b, ii) various E3 ubiquitin ligases similar to human GRAIL (gene related to anergy in lymphocytes) protein, iii) various proteins containing a RING finger motif such as Arabid
Probab=98.52 E-value=2.4e-07 Score=78.78 Aligned_cols=74 Identities=19% Similarity=0.187 Sum_probs=53.8
Q ss_pred eeccccEEEEecCCcCcchhhhhhhhhHHHHHHcCcEEEEEeccCCCCCCCCCCccccCCCCCCCCCEeEcCHHHHHHHH
Q psy9208 154 AEVAGKIVVFNQDFVSYGETVKYRSKGASVASKYGAVATLIRSVTPYSLATPHTGHQSYDAAVKPIPTACIAPEYAEMLY 233 (446)
Q Consensus 154 a~v~GkIvlv~~~~~~yg~~~~~~~~~~~~A~~~GA~avii~~~~~~~~~~p~~g~~~~~~~~~~iP~~~Is~~~~~~L~ 233 (446)
.+++||||||+|+.|.|. .| +.+|.++||+||||||+.+.....+ +-... ......||++.|++++++.|+
T Consensus 36 ~~l~gkIvLV~RG~CsF~------~K-~~nAq~aGA~avII~n~~~~~~~~~-m~~~~-~~~~v~IPav~Is~~~g~~L~ 106 (117)
T cd04813 36 AEIDGKVALVLRGGCGFL------DK-VMWAQRRGAKAVIVGDDEPGRGLIT-MFSNG-DTDNVTIPAMFTSRTSYHLLS 106 (117)
T ss_pred CCcCCeEEEEECCCCCHH------HH-HHHHHHCCCcEEEEEECCCccccee-cccCC-CCCCcEEEEEEEcHHHHHHHH
Confidence 358999999999988654 34 8999999999999998765320000 00001 123457999999999999999
Q ss_pred HHH
Q psy9208 234 RMY 236 (446)
Q Consensus 234 ~~l 236 (446)
+++
T Consensus 107 ~l~ 109 (117)
T cd04813 107 SLL 109 (117)
T ss_pred Hhc
Confidence 875
No 29
>KOG2526|consensus
Probab=98.51 E-value=9.5e-07 Score=88.23 Aligned_cols=181 Identities=21% Similarity=0.178 Sum_probs=120.8
Q ss_pred CCceeceEEEEEc-CcC-----CCCcEEEEEecCCCCCC----CCCcccCCCceeeE-----------------------
Q psy9208 255 GTTNTRNTIVQIR-GRE-----CPDKVVITSGHLDSWDV----GQGAMDDGGGAFIS----------------------- 301 (446)
Q Consensus 255 ~~~~s~NVia~i~-G~~-----~~~~~Vvl~aH~Ds~~~----g~Ga~DngsG~a~l----------------------- 301 (446)
+..+.-||.|++. |-. ..-..|++.||||+.+. .+||+-||||+.++
T Consensus 189 ~s~ki~nI~G~L~~glra~~dg~~lPtIaivA~ydtfgaap~lsvgADSNGSGvvaLLelarlfSkly~ypsTrakYnLl 268 (555)
T KOG2526|consen 189 PSYKILNIVGRLSSGLRAEGDGSALPTIAIVAHYDTFGAAPGLSVGADSNGSGVVALLELARLFSKLYDYPSTRAKYNLL 268 (555)
T ss_pred CCCccceEEeecccccccccccccCCeEEEEEeccccccCCCCCCCCCCCCccHHHHHHHHHHHHHHhcCcccccceeEE
Confidence 3467789999998 321 13469999999999875 47999999999655
Q ss_pred EEeeCccccccccHHHHHHHhHhhh-cceEEEEEecCCCCCccceeeecC--h----hHHHHHHHHHHHhCCCCCcccc-
Q psy9208 302 GILWTAEEQGYVGAIAYVKKHQEEL-KNITVAMESDDGTFTPFGLSLKGS--P----EAACILNKVLRLFKPINATRLV- 373 (446)
Q Consensus 302 f~~~~aEE~Gl~GS~~y~~~~~~~~-~~i~~~in~D~g~~~~~~~~~~gs--~----~l~~l~~~~~~~~~~~~~~~~~- 373 (446)
|+|.+|--....|++.|++.....+ +++.++|-+|..+....++.+.-| | .+..+++.+....+..++....
T Consensus 269 F~lt~aG~lNyqGTkkWLe~dd~~lq~nVdfaiCLdtig~~~s~l~mHvsKpP~dnt~i~qffr~l~svAek~~~~v~~k 348 (555)
T KOG2526|consen 269 FILTAAGKLNYQGTKKWLEFDDADLQKNVDFAICLDTIGRKTSGLFMHVSKPPSDNTVIAQFFRRLNSVAEKKNIEVVTK 348 (555)
T ss_pred EEEccCccccccchhhhhhcchHHHHhcccEEEEhhhhccccCceEEEccCCCCcchHHHHHHHHhhhhchhcceEEEEE
Confidence 8888888888899999999766554 589999999995544445433222 2 2344444433222233332111
Q ss_pred -C--CCCCC--CCchHhHHhCCCeEEEeeeCCCCCCCCCcCCC-CCcCCCCHHHHHHHHHHHHHHHHH
Q psy9208 374 -Q--SKYPV--GSDIELFQEKNIPGVALLNDNAKYFWYHHTRA-DTMSVLDSDTLDLCTALWGGVAYI 435 (446)
Q Consensus 374 -~--~~~~~--gSD~~~F~~~GIP~~~l~~~~~~y~~~yHt~~-Dt~d~ld~~~l~~~~~~~a~~~~~ 435 (446)
. ...-. .=.|--|...-+|+..+.+-..+-++.-.+-. |+...+|.+.|-.++++++..+..
T Consensus 349 hkkInla~s~lAWEHErFsikR~pAfTLS~l~Sprdp~rnsi~~d~rsrldedtLi~ntRlIaEAla~ 416 (555)
T KOG2526|consen 349 HKKINLASSRLAWEHERFSIKRMPAFTLSTLPSPRDPARNSILLDLRSRLDEDTLIDNTRLIAEALAG 416 (555)
T ss_pred eeeEeeccchhhhhhhhhhhhcccceeeccCCCCcchhhccccccchhhhhhhhhhhhhhHHHHHHHH
Confidence 0 00000 12477888899999999986543334444555 888999999998888877766443
No 30
>cd02123 PA_C_RZF_like PA_C-RZF_ like: Protease-associated (PA) domain C_RZF-like. This group includes various PA domain-containing proteins similar to C-RZF (chicken embryo RING zinc finger) protein. These proteins contain a C3H2C3 RING finger. C-RZF is expressed in embryo cells and is restricted mainly to brain and heart, it is localized to both the nucleus and endosomes. Additional C3H2C3 RING finger proteins belonging to this group, include Arabidopsis ReMembR-H2 protein and mouse sperizin. ReMembR-H2 is likely to be an integral membrane protein, and to traffic through the endosomal pathway. Sperizin is expressed in haploid germ cells and localized in the cytoplasm, it may participate in spermatogenesis. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and acce
Probab=98.50 E-value=3.3e-07 Score=81.81 Aligned_cols=78 Identities=17% Similarity=0.218 Sum_probs=58.1
Q ss_pred eeccccEEEEecCCcCcchhhhhhhhhHHHHHHcCcEEEEEeccCCCCCCCCCCccccCCCCCCCCCEeEcCHHHHHHHH
Q psy9208 154 AEVAGKIVVFNQDFVSYGETVKYRSKGASVASKYGAVATLIRSVTPYSLATPHTGHQSYDAAVKPIPTACIAPEYAEMLY 233 (446)
Q Consensus 154 a~v~GkIvlv~~~~~~yg~~~~~~~~~~~~A~~~GA~avii~~~~~~~~~~p~~g~~~~~~~~~~iP~~~Is~~~~~~L~ 233 (446)
..+.|||||++|+.|.|. .| +.+|.++||+|+|||++.+.... +..+. ........||++.|+.++|+.|+
T Consensus 64 ~~~~g~IvLV~RG~CtF~------~K-v~nAq~aGA~avII~n~~~~~~~-~m~~~-~~~~~~v~IP~v~Is~~dg~~L~ 134 (153)
T cd02123 64 NASGSFIVLIRRGNCSFE------TK-VRNAQRAGYKAAIVYNDESNDLI-SMSGN-DQEIKGIDIPSVFVGKSTGEILK 134 (153)
T ss_pred ccCCCeEEEEECCCCCHH------HH-HHHHHHCCCCEEEEEECCCCcce-eccCC-CCCCcCCEEEEEEeeHHHHHHHH
Confidence 357899999999988665 34 89999999999999997653211 11111 00112457999999999999999
Q ss_pred HHHhCCC
Q psy9208 234 RMYRRGD 240 (446)
Q Consensus 234 ~~l~~g~ 240 (446)
+.++.++
T Consensus 135 ~~l~~~~ 141 (153)
T cd02123 135 KYASYEK 141 (153)
T ss_pred HHHhcCC
Confidence 9998775
No 31
>COG4310 Uncharacterized protein conserved in bacteria with an aminopeptidase-like domain [General function prediction only]
Probab=98.48 E-value=9.1e-07 Score=85.09 Aligned_cols=197 Identities=20% Similarity=0.166 Sum_probs=126.6
Q ss_pred EeEcCHHHHHHHHHHHhCCCCceEEEEEEEeEEeCCceeceEEEEEcCcCCCCcEEEEEecCCCCCCCCCcccCCCceee
Q psy9208 221 TACIAPEYAEMLYRMYRRGDGPVVVSINIDARNVGTTNTRNTIVQIRGRECPDKVVITSGHLDSWDVGQGAMDDGGGAFI 300 (446)
Q Consensus 221 ~~~Is~~~~~~L~~~l~~g~~pv~v~l~~~~~~~~~~~s~NVia~i~G~~~~~~~Vvl~aH~Ds~~~g~Ga~DngsG~a~ 300 (446)
.++++..+-.+|. .|+ . .+.+++. .++....----.++|. .++.|++++|+.|.-. ||||-||.|+
T Consensus 137 GFclthn~~~kl~----dgd--y--eVvIDae-~~dG~L~ygefi~rg~--~~~eiLlst~lCHPSm---aNdn~SG~al 202 (435)
T COG4310 137 GFCLTHNEFLKLE----DGD--Y--EVVIDAE-HEDGSLDYGEFIHRGT--SKDEILLSTYLCHPSM---ANDNLSGLAL 202 (435)
T ss_pred hhhcchhHHHHhh----cCC--e--EEEEecc-cccCceehhheeccCC--ccceeeeeecccChhh---ccCccchHHH
Confidence 4677777655544 565 3 4555554 2222211111234664 5677899999999875 8999999998
Q ss_pred E-----------------EEeeCccccccccHHHHHHHhHhhhcceEEEEEecC---CCCCccceeeecChhHHHHHHHH
Q psy9208 301 S-----------------GILWTAEEQGYVGAIAYVKKHQEELKNITVAMESDD---GTFTPFGLSLKGSPEAACILNKV 360 (446)
Q Consensus 301 l-----------------f~~~~aEE~Gl~GS~~y~~~~~~~~~~i~~~in~D~---g~~~~~~~~~~gs~~l~~l~~~~ 360 (446)
+ |+|-.+ .+||-.|+.++.+-++++..-+-+-+ |+..+.--...|..++.+++...
T Consensus 203 l~~lak~l~~~ktrysYRfvf~P~----TiGsi~wLsrnee~lkhvk~GlVlsClGD~g~~nykrtrrgna~iDki~~~t 278 (435)
T COG4310 203 LTFLAKALKSLKTRYSYRFVFAPE----TIGSIVWLSRNEECLKHVKHGLVLSCLGDGGGPNYKRTRRGNALIDKIALHT 278 (435)
T ss_pred HHHHHHHHHhccceeeEEEEeccc----ccchhhhHhcchhHHhhhhcceEEEEecCCCCccceeccccchHHHHHHHHH
Confidence 8 666552 48999999999877777664333332 22222222446777777777666
Q ss_pred HHHhCCCCCccccCCCCCCCCchHhHHh--CCCeEEEeeeCCCCCCCCCcCCCCCcCCCCHHHHHHHHHHHHHHHHHHhc
Q psy9208 361 LRLFKPINATRLVQSKYPVGSDIELFQE--KNIPGVALLNDNAKYFWYHHTRADTMSVLDSDTLDLCTALWGGVAYILAD 438 (446)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~gSD~~~F~~--~GIP~~~l~~~~~~y~~~yHt~~Dt~d~ld~~~l~~~~~~~a~~~~~lA~ 438 (446)
.... +.+.... .+...|||...|-. ...|++++.-.--.-++-|||..|+++-++++.|..--+.+..+++.+-+
T Consensus 279 l~~~-~s~~~~~--dF~p~G~DERQf~sPg~NLpvg~~~Rs~yG~f~~YHtSaDnL~fi~~e~L~~s~~~~memI~~lE~ 355 (435)
T COG4310 279 LKHC-GSNFKAA--DFLPYGSDERQFCSPGFNLPVGGLQRSRYGDFDGYHTSADNLDFISPEGLAGSFQMMMEMILNLEI 355 (435)
T ss_pred HhcC-CcCceee--ecccCCCchhhccCCCcCCchhhhhHhhcCCCccccCccccccccCHHHHHHHHHHHHHHHHHHHh
Confidence 5532 2222222 22225899999985 45677776542211137789999999999999998888888888777654
No 32
>cd02133 PA_C5a_like PA_C5a_like: Protease-associated domain containing proteins like Streptococcus pyogenes C5a peptidase. This group contains various PA domain-containing proteins similar to S. pyogenes C5a, including, i) Vpr, a minor extracellular serine protease from Bacillus subtilis, ii) a large molecular mass collagenolytic protease from Geobacillus collagenovorans MO-1, and iii) PrtS, a cell envelope protease from Streptococcus thermophilus CNRZ 385. Proteins in this group belong to the peptidase S8 family. C5a peptidase is a cell surface serine protease which specifically inactivates C5a [a chemotactic peptide, which attracts polymorphonuclear leukocytes (PMNs)], by cleaving it to release a 7-residue carboxy-terminal fragment which contains the PMN binding site. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promotin
Probab=98.39 E-value=1.4e-06 Score=76.87 Aligned_cols=83 Identities=20% Similarity=0.235 Sum_probs=59.8
Q ss_pred CCcee-eccccEEEEecCCcCcchhhhhhhhhHHHHHHcCcEEEEEeccCCCCCCCCCCccccCCCCCCCCCEeEcCHHH
Q psy9208 150 GGITA-EVAGKIVVFNQDFVSYGETVKYRSKGASVASKYGAVATLIRSVTPYSLATPHTGHQSYDAAVKPIPTACIAPEY 228 (446)
Q Consensus 150 ~gi~a-~v~GkIvlv~~~~~~yg~~~~~~~~~~~~A~~~GA~avii~~~~~~~~~~p~~g~~~~~~~~~~iP~~~Is~~~ 228 (446)
+++.. +++|||||++++.|.| ..| +.+|.++||+|+|+|++.++.... . ......||++.|+.++
T Consensus 39 ~d~~~~dv~GkIvL~~rg~c~~------~~K-~~~a~~aGA~gvIi~n~~~~~~~~----~---~~~~~~iP~v~Is~~d 104 (143)
T cd02133 39 EDFEGKDVKGKIALIQRGEITF------VEK-IANAKAAGAVGVIIYNNVDGLIPG----T---LGEAVFIPVVFISKED 104 (143)
T ss_pred hccCCCCccceEEEEECCCCCH------HHH-HHHHHHCCCeEEEEeecCCCcccc----c---CCCCCeEeEEEecHHH
Confidence 44543 5999999999987643 345 899999999999999876432111 0 0113469999999999
Q ss_pred HHHHHHHHhCCCCceEEEEEE
Q psy9208 229 AEMLYRMYRRGDGPVVVSINI 249 (446)
Q Consensus 229 ~~~L~~~l~~g~~pv~v~l~~ 249 (446)
|+.|++.+++ . +++++..
T Consensus 105 G~~L~~~l~~--~-~~i~~~~ 122 (143)
T cd02133 105 GEALKAALES--S-KKLTFNT 122 (143)
T ss_pred HHHHHHHHhC--C-CeEEEEe
Confidence 9999999976 2 5555443
No 33
>cd02120 PA_subtilisin_like PA_subtilisin_like: Protease-associated domain containing subtilisin-like proteases. This group contains various PA domain-containing subtilisin-like proteases including melon cucumisin, Arabidopsis thaliana Ara12, a nodule specific serine protease from Alnus glutinosa ag12, members of the tomato P69 family, and tomato LeSBT2. These proteins belong to the peptidase S8 family. Cucumisin from the juice of melon fruits is a thermostable serine peptidase, with a broad substrate specificity for oligopeptides and proteins. A. thaliana Ara12 is a thermostable, extracellular serine protease, found chiefly in silique tissue and stem tissue. Ara12 is stimulated by Ca2+ ions. A. glutinosa ag12 is expressed at high levels in the nodules, and at low levels in the shoot tips; it is implicated in both symbiotic and non-symbiotic processes in plant development. The tomato P69 protease family is comprised of various protein isoforms of approximately 69KDa. These isoforms accu
Probab=98.21 E-value=6.4e-06 Score=70.75 Aligned_cols=81 Identities=16% Similarity=0.187 Sum_probs=58.5
Q ss_pred CCCCCCce-eeccccEEEEecCCc-CcchhhhhhhhhHHHHHHcCcEEEEEeccCCCCCCCCCCccccCCCCCCCCCEeE
Q psy9208 146 GTPQGGIT-AEVAGKIVVFNQDFV-SYGETVKYRSKGASVASKYGAVATLIRSVTPYSLATPHTGHQSYDAAVKPIPTAC 223 (446)
Q Consensus 146 ~t~~~gi~-a~v~GkIvlv~~~~~-~yg~~~~~~~~~~~~A~~~GA~avii~~~~~~~~~~p~~g~~~~~~~~~~iP~~~ 223 (446)
.|.+.... ..++|||||++++.| . +..+ ...|.++||+|+|++++.+..... ......+|++.
T Consensus 39 ~C~~~~~~~~~v~GkIVlc~~~~~~~------~~~k-~~~~~~~GA~gvI~~~~~~~~~~~--------~~~~~~iP~v~ 103 (126)
T cd02120 39 LCLPGSLDPSKVKGKIVLCDRGGNTS------RVAK-GDAVKAAGGAGMILANDPTDGLDV--------VADAHVLPAVH 103 (126)
T ss_pred cCCCCCCChhhccccEEEEeCCCCcc------HHHH-HHHHHHcCCcEEEEEecCCCCcee--------cccccccceEE
Confidence 45544443 359999999988765 3 2234 888999999999999875432111 01134699999
Q ss_pred cCHHHHHHHHHHHhCCCC
Q psy9208 224 IAPEYAEMLYRMYRRGDG 241 (446)
Q Consensus 224 Is~~~~~~L~~~l~~g~~ 241 (446)
|+.++++.|++.++++..
T Consensus 104 I~~~~g~~l~~y~~~~~~ 121 (126)
T cd02120 104 VDYEDGTAILSYINSTSN 121 (126)
T ss_pred ECHHHHHHHHHHHHcCCC
Confidence 999999999999987754
No 34
>TIGR03176 AllC allantoate amidohydrolase. This enzyme catalyzes the breakdown of allantoate, first to ureidoglycine by hydrolysis and then decarboxylation of one of the two equivalent ureido groups. Ureidoglycine then spontaneously exchanges ammonia for water resulting in ureidoglycolate. This enzyme is an alternative to allantoicase (3.5.3.4) which releases urea.
Probab=97.89 E-value=1e-05 Score=83.73 Aligned_cols=60 Identities=25% Similarity=0.403 Sum_probs=52.5
Q ss_pred ceEEEEEcCcCCCCcEEEEEecCCCCCCCCCcccCCCceeeE-------------------EEeeCccccc-----cccH
Q psy9208 260 RNTIVQIRGRECPDKVVITSGHLDSWDVGQGAMDDGGGAFIS-------------------GILWTAEEQG-----YVGA 315 (446)
Q Consensus 260 ~NVia~i~G~~~~~~~Vvl~aH~Ds~~~g~Ga~DngsG~a~l-------------------f~~~~aEE~G-----l~GS 315 (446)
.|++|.++|.+...+.|++|+|+|+++.| |..|+..||++. +++|+.||-+ ++||
T Consensus 56 gN~~~~~~g~~~~~~~i~~gsHlDtv~~g-G~~dg~~Gv~~~le~~~~l~~~~~~~~~~i~vi~~~~EEg~rf~~~~~Gs 134 (406)
T TIGR03176 56 GNLYGRLVGTEFPEETILTGSHIDTVVNG-GNLDGQFGALAAWLAVDYLKEKYGAPLRTVEVLSMAEEEGSRFPYVFWGS 134 (406)
T ss_pred CcEEEEecCCCCCCCeEEEeccccCCCCC-CccCchhhHHHHHHHHHHHHHcCCCCCCCeEEEEeccccCccCCcccccH
Confidence 69999999974345799999999999987 899999999766 8999989876 8999
Q ss_pred HHHHH
Q psy9208 316 IAYVK 320 (446)
Q Consensus 316 ~~y~~ 320 (446)
+.|.-
T Consensus 135 ~~~~g 139 (406)
T TIGR03176 135 KNIFG 139 (406)
T ss_pred HHHhC
Confidence 99984
No 35
>PF01546 Peptidase_M20: Peptidase family M20/M25/M40 This family only corresponds to M20 family; InterPro: IPR002933 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of proteins contains the metallopeptidases and non-peptidase homologues (amidohydrolases) that belong to the MEROPS peptidase family M20 (clan MH) []. The peptidases of this clan have two catalytic zinc ions at the active site, bound by His/Asp, Asp, Glu, Asp/Glu and His. The catalysed reaction involves the release of an N-terminal amino acid, usually neutral or hydrophobic, from a polypeptide []. The peptidase M20 family has four sub-families: M20A - type example, glutamate carboxypeptidase from Pseudomonas sp. RS16 (P06621 from SWISSPROT) M20B - type example, peptidase T from Escherichia coli (P29745 from SWISSPROT) M20C - type example, X-His dipeptidase from E. coli (P15288 from SWISSPROT) M20D - type example, carboxypeptidase Ss1 from Sulfolobus solfataricus (P80092 from SWISSPROT) ; GO: 0016787 hydrolase activity, 0008152 metabolic process; PDB: 3T68_A 3T6M_A 2F8H_A 3GB0_A 3IO1_B 2ZOF_A 2ZOG_B 3MRU_B 3N5F_A 1Z2L_B ....
Probab=97.84 E-value=3.6e-05 Score=70.20 Aligned_cols=145 Identities=16% Similarity=0.134 Sum_probs=91.9
Q ss_pred EEEecCCCCC-------------------CCCCcccCCCceeeE-------------------EEeeCccccccc-cHHH
Q psy9208 277 ITSGHLDSWD-------------------VGQGAMDDGGGAFIS-------------------GILWTAEEQGYV-GAIA 317 (446)
Q Consensus 277 vl~aH~Ds~~-------------------~g~Ga~DngsG~a~l-------------------f~~~~aEE~Gl~-GS~~ 317 (446)
++.+|+|.++ .|.|+.|+.+|++++ |++...||.|.. |+++
T Consensus 1 ll~~H~Dtv~~~~~w~~~pf~~~~~~~~~~grG~~D~k~~~~~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~g~~~ 80 (189)
T PF01546_consen 1 LLYAHMDTVPGPEGWKHDPFELSIEDGRLYGRGADDMKGGIAAMLAALKALKESGDDLPGNIIFLFTPDEEIGSIGGAKH 80 (189)
T ss_dssp EEEEES-BCSTGGGSSSSTTSEEEETTEEESTTTTTTHHHHHHHHHHHHHHHHTTTTCSSEEEEEEESTCCGTSTTHHHH
T ss_pred CccccccccCCcCcCCCCCcccEEECCEEEcCCcCCCcccHHHHHHHHHHHHhccccccccccccccccccCCCcchhhh
Confidence 5789999988 268999998888766 999999999998 9999
Q ss_pred HHHHhHhhhcceEEEEEecCCCCCccceeeecChhHHHHHHHHHHHhCCCCCccccCCCCCCCCchHhHH---hCCCeEE
Q psy9208 318 YVKKHQEELKNITVAMESDDGTFTPFGLSLKGSPEAACILNKVLRLFKPINATRLVQSKYPVGSDIELFQ---EKNIPGV 394 (446)
Q Consensus 318 y~~~~~~~~~~i~~~in~D~g~~~~~~~~~~gs~~l~~l~~~~~~~~~~~~~~~~~~~~~~~gSD~~~F~---~~GIP~~ 394 (446)
++++......++...+..|.+..... ...-++.+.+.+.+.++.+.. ........ ..++|...|. ..|+|.+
T Consensus 81 l~~~~~~~~~~~~~~~~~e~~~~~~~--~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~g~tD~~~~~~~~~~~~~~i 155 (189)
T PF01546_consen 81 LLEEGAFFGLHPDYVIIGEPTGKGGV--GSDNDPPLVQALQAAAQEVGG--EPPEPVAS-GGGTDAGFLAEVKGLGIPAI 155 (189)
T ss_dssp HHHHCEEEEEEESEEEECECETTSEE--EHCTCHHHHHHHHHHHHHTTS--SEEEEEEE-SSSSTHHHHHCHHHTTEEEE
T ss_pred hhhhcccccccccccccccccccccc--cccccHHHHHHHHHHHHHHhh--ccccccce-eccccchhhhhhhcccccee
Confidence 99974211112334444443222210 122344466666666654322 12111111 1469998888 4799999
Q ss_pred EeeeCCCCCCCCCcCCCCCcCCCCHHHHHHHHHHHHHHH
Q psy9208 395 ALLNDNAKYFWYHHTRADTMSVLDSDTLDLCTALWGGVA 433 (446)
Q Consensus 395 ~l~~~~~~y~~~yHt~~Dt~d~ld~~~l~~~~~~~a~~~ 433 (446)
.+..+. ...|++ =+.++.+.+...+++++.++
T Consensus 156 ~~G~~~----~~~H~~---~E~i~~~~l~~~~~~~~~~l 187 (189)
T PF01546_consen 156 GFGPGG----SNAHTP---DEYIDIEDLVKGAKIYAALL 187 (189)
T ss_dssp EEESCE----ESTTST---T-EEEHHHHHHHHHHHHHHH
T ss_pred eeCCCC----CCCCCC---CcEecHHHHHHHHHHHHHHH
Confidence 887654 345875 35678889999998887765
No 36
>TIGR01879 hydantase amidase, hydantoinase/carbamoylase family. Enzymes in this subfamily hydrolize the amide bonds of compounds containing carbamoyl groups or hydantoin rings. These enzymes are members of the broader family of amidases represented by pfam01546.
Probab=97.78 E-value=3.9e-05 Score=79.18 Aligned_cols=60 Identities=30% Similarity=0.397 Sum_probs=51.7
Q ss_pred ceEEEEEcCcCCC-CcEEEEEecCCCCCCCCCcccCCCceeeE-------------------EEeeCcccc-----cccc
Q psy9208 260 RNTIVQIRGRECP-DKVVITSGHLDSWDVGQGAMDDGGGAFIS-------------------GILWTAEEQ-----GYVG 314 (446)
Q Consensus 260 ~NVia~i~G~~~~-~~~Vvl~aH~Ds~~~g~Ga~DngsG~a~l-------------------f~~~~aEE~-----Gl~G 314 (446)
.||+|+++|+ .+ .+.|++++|+|+++.| |..|+..|++++ |++|..||. |++|
T Consensus 54 ~nl~a~~~g~-~~~~~~l~~~~H~DtV~~g-g~~dg~~gvaa~l~a~~~l~~~g~~~~~~i~~~~~~dEE~~~f~~~~~G 131 (401)
T TIGR01879 54 GNLIGRKEGT-EPPLEVVLSGSHIDTVVNG-GNFDGQLGVLAGIEVVDALKEAYVVPLHPIEVVAFTEEEGSRFPYGMWG 131 (401)
T ss_pred CcEEEEecCC-CCCCCEEEEecccccCCCC-CccCCHHHHHHHHHHHHHHHHcCCCCCCCeEEEEEeCCcCcCccccccc
Confidence 5999999986 44 4899999999999986 788999998655 999999997 7899
Q ss_pred HHHHHHH
Q psy9208 315 AIAYVKK 321 (446)
Q Consensus 315 S~~y~~~ 321 (446)
|++|+.+
T Consensus 132 s~~~~~~ 138 (401)
T TIGR01879 132 SRNMVGL 138 (401)
T ss_pred HHHHhcc
Confidence 9999853
No 37
>cd04814 PA_M28_1 PA_M28_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1. A subfamily of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subfamilies, relatively little is known a
Probab=97.62 E-value=0.00033 Score=61.41 Aligned_cols=95 Identities=20% Similarity=0.200 Sum_probs=57.7
Q ss_pred eEEecCCCC---CCCCCCcee-eccccEEEEecCCcC-------cchh-----hhhhhhhHHHHHHcCcEEEEEeccCCC
Q psy9208 137 PVSTLGGSV---GTPQGGITA-EVAGKIVVFNQDFVS-------YGET-----VKYRSKGASVASKYGAVATLIRSVTPY 200 (446)
Q Consensus 137 ~~~~l~~s~---~t~~~gi~a-~v~GkIvlv~~~~~~-------yg~~-----~~~~~~~~~~A~~~GA~avii~~~~~~ 200 (446)
++...+|.. .|...++.. +|+|||||+.++.|. ++.. ..++.| ...|.++||+|||++++.+.
T Consensus 23 elVfvGyGi~a~~~~~dDYag~DVkGKIVlv~~g~P~~~~~~~~~~~~~~~~~~~~~~K-~~~A~~~GA~gvIii~~~~~ 101 (142)
T cd04814 23 PLVFVGYGIKAPELSWDDYAGLDVKGKVVVVLRNDPQGEPGAGDFGGKAMTYYGRWTYK-YEEAARHGAAGVLIVHELAP 101 (142)
T ss_pred eeEEecCCcCCCCCChhhcCCCCCCCcEEEEEcCCCCcccccccccccccccccCHHHH-HHHHHHCCCcEEEEEeCCCc
Confidence 444555542 233345543 699999999988762 1110 123445 99999999999999997653
Q ss_pred CCCCCCCccccCCCCCCCCC-EeEcCHHHHHHHHHH
Q psy9208 201 SLATPHTGHQSYDAAVKPIP-TACIAPEYAEMLYRM 235 (446)
Q Consensus 201 ~~~~p~~g~~~~~~~~~~iP-~~~Is~~~~~~L~~~ 235 (446)
..+ |..-... .....++ ..+|+.+.+.+|.+.
T Consensus 102 ~~~-p~~~~~~--~~~~~~~~~~~i~~~~a~~l~~~ 134 (142)
T cd04814 102 ASY-GWATWKN--PAKVHPNLEAAIQRAVAVDLFEA 134 (142)
T ss_pred ccC-Chhhhhc--ccccCCceeeEecHHHHHHHHhh
Confidence 211 2111111 1123355 457999999988865
No 38
>cd04822 PA_M28_1_3 PA_M28_1_3: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 3. A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt
Probab=97.61 E-value=0.00022 Score=63.20 Aligned_cols=78 Identities=17% Similarity=0.123 Sum_probs=49.5
Q ss_pred eccccEEEEecCCc-------Cc-----chhhhhhhhhHHHHHHcCcEEEEEeccCCCCCCCCCCccccCCCCCCCCCEe
Q psy9208 155 EVAGKIVVFNQDFV-------SY-----GETVKYRSKGASVASKYGAVATLIRSVTPYSLATPHTGHQSYDAAVKPIPTA 222 (446)
Q Consensus 155 ~v~GkIvlv~~~~~-------~y-----g~~~~~~~~~~~~A~~~GA~avii~~~~~~~~~~p~~g~~~~~~~~~~iP~~ 222 (446)
+|+|||||+.++.+ .+ ..+++++.| +.+|.++||+|||+|++.+... +.....+.. ..-.++
T Consensus 45 DVkGKIVlv~~g~P~~~~~~~~~~~~~~~~~~~~~~K-~~~A~~~GA~aVIv~~d~~~~~--~~~~~~~~~---~~~~~~ 118 (151)
T cd04822 45 DVKGKIVLVLRHEPQEDDANSRFNGPGLTRHAGLRYK-ATNARRHGAAAVIVVNGPNSHS--GDADRLPRF---GGTAPQ 118 (151)
T ss_pred CCCCeEEEEEcCCcccccccccccccccccccCHHHH-HHHHHHCCCeEEEEEeCCcccC--ccccccccc---CccceE
Confidence 69999999987742 11 123455556 9999999999999998754211 111111100 111177
Q ss_pred EcCHHHHHHHHHHHhC
Q psy9208 223 CIAPEYAEMLYRMYRR 238 (446)
Q Consensus 223 ~Is~~~~~~L~~~l~~ 238 (446)
.|+...++.+.+.+..
T Consensus 119 ~~~~~~~~~~~~~~~~ 134 (151)
T cd04822 119 RVDIAAADPWFTAAEA 134 (151)
T ss_pred EechHHHHHHhhhhhh
Confidence 8888889988886443
No 39
>cd04821 PA_M28_1_2 PA_M28_1_2: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 2. A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt
Probab=97.54 E-value=0.00063 Score=60.76 Aligned_cols=98 Identities=18% Similarity=0.266 Sum_probs=56.8
Q ss_pred eEEecCCCCCCCCC---Ccee-eccccEEEEecCCcCcch--------h--h---hhhhhhHHHHHHcCcEEEEEeccCC
Q psy9208 137 PVSTLGGSVGTPQG---GITA-EVAGKIVVFNQDFVSYGE--------T--V---KYRSKGASVASKYGAVATLIRSVTP 199 (446)
Q Consensus 137 ~~~~l~~s~~t~~~---gi~a-~v~GkIvlv~~~~~~yg~--------~--~---~~~~~~~~~A~~~GA~avii~~~~~ 199 (446)
++...+|....|.. ++.. +|+|||||+..+.+.+.. . . ..+.| ...|.++||+|+|++++.+
T Consensus 25 elVFvGyGi~ape~~~dDy~g~DVkGKiVvvl~~~P~~~~~~~~~f~~~~~~~~~~~~~K-~~~A~~~GA~gvi~v~~~~ 103 (157)
T cd04821 25 PLVFVGYGIVAPEYGWDDYKGLDVKGKTVVILVNDPGFATPDSGLFNGKAMTYYGRWTYK-YEEAARQGAAGALIVHETE 103 (157)
T ss_pred CEEEeccCccCcccCcccccCCCcCCcEEEEEcCCCCcccccccccCcccccccccHHHH-HHHHHHCCCeEEEEEeCCC
Confidence 34455555444432 2322 599999999876543221 0 0 12234 9999999999999997754
Q ss_pred CC---CCCCC--CccccC-----CCCCCCCCE-eEcCHHHHHHHHHH
Q psy9208 200 YS---LATPH--TGHQSY-----DAAVKPIPT-ACIAPEYAEMLYRM 235 (446)
Q Consensus 200 ~~---~~~p~--~g~~~~-----~~~~~~iP~-~~Is~~~~~~L~~~ 235 (446)
.. |.... .+...+ ....+.+++ .+|+.+.+++|.+.
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~is~~~A~~lf~~ 150 (157)
T cd04821 104 PASYGWSVVQSSWTGEQFDLVRANPGAPRVKVEGWIQRDAAVKLFAL 150 (157)
T ss_pred cccCChhhhccccCCCceEeecccccCCCceEEEEECHHHHHHHHHh
Confidence 31 11111 111111 112344554 57999999999976
No 40
>COG1363 FrvX Cellulase M and related proteins [Carbohydrate transport and metabolism]
Probab=97.51 E-value=0.0011 Score=66.87 Aligned_cols=122 Identities=18% Similarity=0.119 Sum_probs=83.3
Q ss_pred EEeeCccccccccHHHHHHHhHhhhcceEEEEEecC-CCCCcc-----------c--e--e---eecChhHHHHHHHHHH
Q psy9208 302 GILWTAEEQGYVGAIAYVKKHQEELKNITVAMESDD-GTFTPF-----------G--L--S---LKGSPEAACILNKVLR 362 (446)
Q Consensus 302 f~~~~aEE~Gl~GS~~y~~~~~~~~~~i~~~in~D~-g~~~~~-----------~--~--~---~~gs~~l~~l~~~~~~ 362 (446)
|++..-||.|+.|++..+.+...+ +.|.+|. .+.+.. + + . ...++.+.+.+.++++
T Consensus 206 ~v~tvqEEVGlrGA~~~a~~i~pd-----~aiavd~~~~~d~~~~~~~~~~lg~Gp~i~~~D~~~~~~~~l~~~L~~~A~ 280 (355)
T COG1363 206 FVASVQEEVGLRGAKTSAFRIKPD-----IAIAVDVTPAGDTPGVPKGDVKLGKGPVIRVKDASGIYHPKLRKFLLELAE 280 (355)
T ss_pred EEEecchhhccchhhccccccCCC-----EEEEEecccccCCCCCcccccccCCCCEEEEEcCCCCCCHHHHHHHHHHHH
Confidence 888899999999998888765433 4555665 222221 1 1 1 1235667777777776
Q ss_pred HhCCCCCccccC--CCCCCCCchHhHHh--CCCeEEEeeeCCCCCCCCCcCCCCCcCCCCHHHHHHHHHHHHHHHHHHhc
Q psy9208 363 LFKPINATRLVQ--SKYPVGSDIELFQE--KNIPGVALLNDNAKYFWYHHTRADTMSVLDSDTLDLCTALWGGVAYILAD 438 (446)
Q Consensus 363 ~~~~~~~~~~~~--~~~~~gSD~~~F~~--~GIP~~~l~~~~~~y~~~yHt~~Dt~d~ld~~~l~~~~~~~a~~~~~lA~ 438 (446)
. .++++... ++ .|||-..+.. .|||+..|.... + |-|++ .+-++.+.+....+++..++-.+..
T Consensus 281 ~---~~Ip~Q~~v~~~--ggTDA~a~~~~g~gvpta~Igip~-r---y~Hs~---~e~~~~~D~~~~~~Ll~~~i~~~~~ 348 (355)
T COG1363 281 K---NNIPYQVDVSPG--GGTDAGAAHLTGGGVPTALIGIPT-R---YIHSP---VEVAHLDDLEATVKLLVAYLESLDR 348 (355)
T ss_pred H---cCCCeEEEecCC--CCccHHHHHHcCCCCceEEEeccc-c---cccCc---ceeecHHHHHHHHHHHHHHHHhcch
Confidence 4 46665433 44 6899988874 579999997753 2 45885 6788999999999988888877654
Q ss_pred CC
Q psy9208 439 LS 440 (446)
Q Consensus 439 ~~ 440 (446)
..
T Consensus 349 ~~ 350 (355)
T COG1363 349 ET 350 (355)
T ss_pred hh
Confidence 43
No 41
>PRK12890 allantoate amidohydrolase; Reviewed
Probab=97.44 E-value=9.4e-05 Score=76.65 Aligned_cols=61 Identities=28% Similarity=0.345 Sum_probs=51.4
Q ss_pred ceEEEEEcCcCCCCcEEEEEecCCCCCCCCCcccCCCceeeE-------------------EEeeCcccc-----ccccH
Q psy9208 260 RNTIVQIRGRECPDKVVITSGHLDSWDVGQGAMDDGGGAFIS-------------------GILWTAEEQ-----GYVGA 315 (446)
Q Consensus 260 ~NVia~i~G~~~~~~~Vvl~aH~Ds~~~g~Ga~DngsG~a~l-------------------f~~~~aEE~-----Gl~GS 315 (446)
.|+||+++|...+.+.|++++|+|+++.+ |..|+.+|++++ |+++..||. |++||
T Consensus 61 ~nlia~~~g~~~~~~~l~~~~H~DtVp~~-g~~D~~~g~aa~l~a~~~l~~~~~~~~~~i~~~~~~dEE~~~~~~~~~G~ 139 (414)
T PRK12890 61 GNLFGRLPGRDPDLPPLMTGSHLDTVPNG-GRYDGILGVLAGLEVVAALREAGIRPPHPLEVIAFTNEEGVRFGPSMIGS 139 (414)
T ss_pred CcEEEEeCCCCCCCCEEEEeCcccCCCCC-CCcCCHHHHHHHHHHHHHHHHcCCCCCCCeEEEEEecccccccCCccccH
Confidence 49999998863345789999999999975 788999999877 999999997 67899
Q ss_pred HHHHHH
Q psy9208 316 IAYVKK 321 (446)
Q Consensus 316 ~~y~~~ 321 (446)
++|...
T Consensus 140 ~~~~~~ 145 (414)
T PRK12890 140 RALAGT 145 (414)
T ss_pred HHHHcc
Confidence 888664
No 42
>PRK07338 hypothetical protein; Provisional
Probab=97.42 E-value=0.0022 Score=66.06 Aligned_cols=54 Identities=19% Similarity=0.018 Sum_probs=42.0
Q ss_pred CCchHhHHhCCCeEEE-eeeCCCCCCCCCcCCCCCcCCCCHHHHHHHHHHHHHHHHHHhcCC
Q psy9208 380 GSDIELFQEKNIPGVA-LLNDNAKYFWYHHTRADTMSVLDSDTLDLCTALWGGVAYILADLS 440 (446)
Q Consensus 380 gSD~~~F~~~GIP~~~-l~~~~~~y~~~yHt~~Dt~d~ld~~~l~~~~~~~a~~~~~lA~~~ 440 (446)
++|-..|...|||++. +..++ ...|++. ++++.+.+...+++++.+++.+++.+
T Consensus 347 ~tDa~~~~~~giP~v~~~Gpg~----~~~H~~~---E~v~i~~l~~~~~~~~~~l~~~~~~~ 401 (402)
T PRK07338 347 VCDGNNLAAAGLPVVDTLGVRG----GNIHSED---EFVILDSLVERAQLSALILMRLAQGE 401 (402)
T ss_pred cchHHHHhhcCCCeEeccCCCC----CCCCCcc---ceEehhhHHHHHHHHHHHHHHHhcCC
Confidence 4888777788999995 44432 2348863 88999999999999999999987654
No 43
>PRK13799 unknown domain/N-carbamoyl-L-amino acid hydrolase fusion protein; Provisional
Probab=97.40 E-value=0.0001 Score=79.83 Aligned_cols=59 Identities=27% Similarity=0.456 Sum_probs=51.9
Q ss_pred ceEEEEEcCcCCCCcEEEEEecCCCCCCCCCcccCCCceeeE-------------------EEeeCcccc-----ccccH
Q psy9208 260 RNTIVQIRGRECPDKVVITSGHLDSWDVGQGAMDDGGGAFIS-------------------GILWTAEEQ-----GYVGA 315 (446)
Q Consensus 260 ~NVia~i~G~~~~~~~Vvl~aH~Ds~~~g~Ga~DngsG~a~l-------------------f~~~~aEE~-----Gl~GS 315 (446)
.||+|.++|.+...+.|++|+|+|+++.| |--|...|+++. |+.|..||- +++||
T Consensus 238 gNv~~~~~g~~~~~p~v~~gSHlDTV~~g-G~~DG~~Gv~a~l~~~~~l~~~~~~~~~~i~vi~~~~EEg~rF~~~~~GS 316 (591)
T PRK13799 238 GNVVGRYKAADDDAKTLITGSHYDTVRNG-GKYDGREGIFLAIACVKELHEQGERLPFHFEVIAFAEEEGQRFKATFLGS 316 (591)
T ss_pred CCEEEEcCCCCCCCCeEEEeccccccCCC-CccccHHHHHHHHHHHHHHHHcCCCCCCCeEEEEecCCCccCCCccccch
Confidence 89999999973345799999999999986 889999999766 999999996 78999
Q ss_pred HHHH
Q psy9208 316 IAYV 319 (446)
Q Consensus 316 ~~y~ 319 (446)
+.|+
T Consensus 317 ~~~~ 320 (591)
T PRK13799 317 GALI 320 (591)
T ss_pred HHHh
Confidence 9998
No 44
>PRK13590 putative bifunctional OHCU decarboxylase/allantoate amidohydrolase; Provisional
Probab=97.40 E-value=0.00012 Score=79.50 Aligned_cols=59 Identities=27% Similarity=0.483 Sum_probs=50.6
Q ss_pred eceEEEEEcCcCCCC-cEEEEEecCCCCCCCCCcccCCCceeeE-------------------EEeeCcccc-----ccc
Q psy9208 259 TRNTIVQIRGRECPD-KVVITSGHLDSWDVGQGAMDDGGGAFIS-------------------GILWTAEEQ-----GYV 313 (446)
Q Consensus 259 s~NVia~i~G~~~~~-~~Vvl~aH~Ds~~~g~Ga~DngsG~a~l-------------------f~~~~aEE~-----Gl~ 313 (446)
..||++.++|. .++ +.|++++|+|+++.| |..|+..|++++ |++|+.||- +++
T Consensus 237 ~GNl~~~~~g~-~~~~~~v~~gsHlDTV~~g-G~~DG~~Gv~a~lea~~~l~~~~~~~~~~i~vv~~~~EEg~rF~~~~~ 314 (591)
T PRK13590 237 VGNVVGRYKGS-TPQAKRLLTGSHYDTVRNG-GKYDGRLGIFVPMACVRELHRQGRRLPFGLEVVGFAEEEGQRYKATFL 314 (591)
T ss_pred CCCEEEEecCC-CCCCCeEEEecccccCCCC-CCcccHHHHHHHHHHHHHHHHcCCCCCCCeEEEEecCCccccCCcccc
Confidence 38999999996 444 789999999999986 888999999776 999999996 589
Q ss_pred cHHHHH
Q psy9208 314 GAIAYV 319 (446)
Q Consensus 314 GS~~y~ 319 (446)
||+.|.
T Consensus 315 GS~~~~ 320 (591)
T PRK13590 315 GSGALI 320 (591)
T ss_pred chHHHh
Confidence 999753
No 45
>PRK06133 glutamate carboxypeptidase; Reviewed
Probab=97.38 E-value=0.00063 Score=70.45 Aligned_cols=89 Identities=18% Similarity=0.278 Sum_probs=64.0
Q ss_pred HHHHHHHHHHhCCCCceEEEEEEEeEEeCCceeceEEEEEcCcCCCCcEEEEEecCCCCCC-----------------CC
Q psy9208 227 EYAEMLYRMYRRGDGPVVVSINIDARNVGTTNTRNTIVQIRGRECPDKVVITSGHLDSWDV-----------------GQ 289 (446)
Q Consensus 227 ~~~~~L~~~l~~g~~pv~v~l~~~~~~~~~~~s~NVia~i~G~~~~~~~Vvl~aH~Ds~~~-----------------g~ 289 (446)
+.++.|.+.++.-. +.++ .... ......||+|+++|+ +.+.|++.+|+|.++. |.
T Consensus 61 ~~~~~l~~~L~~~G--~~v~--~~~~--~~~~~~~lia~~~g~--~~~~ill~~H~D~Vp~~~~w~~~Pf~~~~~~iyGr 132 (410)
T PRK06133 61 QVAALLAERLKALG--AKVE--RAPT--PPSAGDMVVATFKGT--GKRRIMLIAHMDTVYLPGMLAKQPFRIDGDRAYGP 132 (410)
T ss_pred HHHHHHHHHHHhCC--CeEE--EEcc--CCCCCCeEEEEECCC--CCceEEEEeecCccCCCCccCCCCEEEECCEEECC
Confidence 35666777665321 3322 2111 112346999999875 3467999999999974 47
Q ss_pred CcccCCCceeeE-------------------EEeeCccccccccHHHHHHHhH
Q psy9208 290 GAMDDGGGAFIS-------------------GILWTAEEQGYVGAIAYVKKHQ 323 (446)
Q Consensus 290 Ga~DngsG~a~l-------------------f~~~~aEE~Gl~GS~~y~~~~~ 323 (446)
|+.|+.+|++++ |++..+||.|..|++++++++.
T Consensus 133 G~~D~kgg~a~~l~a~~~l~~~~~~~~~~i~~~~~~dEE~g~~G~~~~~~~~~ 185 (410)
T PRK06133 133 GIADDKGGVAVILHALKILQQLGFKDYGTLTVLFNPDEETGSPGSRELIAELA 185 (410)
T ss_pred ccccchHHHHHHHHHHHHHHHcCCCCCCCEEEEEECCcccCCccHHHHHHHHh
Confidence 889999999877 8899999999899999998754
No 46
>PF05343 Peptidase_M42: M42 glutamyl aminopeptidase; InterPro: IPR008007 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M42 (glutamyl aminopeptidase family, clan MH). For members of this family and family M28 the predicted metal ligands occur in the same order in the sequence: H, D, E, D/E, H; and the active site residues occur in the motifs HXD and EE. ; PDB: 2WYR_C 2CF4_A 1VHO_A 3ISX_A 3KL9_G 1YLO_F 3CPX_C 1VHE_A 2GRE_F 1XFO_A ....
Probab=97.33 E-value=0.0012 Score=65.13 Aligned_cols=108 Identities=19% Similarity=0.244 Sum_probs=64.1
Q ss_pred EEeeCccccccccHHHHHHHhHhhhcceEEEEEecC-------CCCCc---c--c--e--e---eecChhHHHHHHHHHH
Q psy9208 302 GILWTAEEQGYVGAIAYVKKHQEELKNITVAMESDD-------GTFTP---F--G--L--S---LKGSPEAACILNKVLR 362 (446)
Q Consensus 302 f~~~~aEE~Gl~GS~~y~~~~~~~~~~i~~~in~D~-------g~~~~---~--~--~--~---~~gs~~l~~l~~~~~~ 362 (446)
|+|...||.|+.|++.-+.+..-+ +.|.+|. +.... . | + . ...++.+.+.+.++++
T Consensus 160 ~v~tvqEEvG~rGA~~aa~~i~PD-----~ai~vD~~~a~d~~~~~~~~~~lG~Gp~i~~~D~~~i~~~~l~~~l~~~A~ 234 (292)
T PF05343_consen 160 FVFTVQEEVGLRGAKTAAFRIKPD-----IAIAVDVTPAGDTPGSDEKEQGLGKGPVIRVGDSSMIPNPKLVDKLREIAE 234 (292)
T ss_dssp EEEESSCTTTSHHHHHHHHHH-CS-----EEEEEEEEEESSSTTSTTTTSCTTS-EEEEEEETTEESHHHHHHHHHHHHH
T ss_pred EEEEeeeeecCcceeecccccCCC-----EEEEEeeeccCCCCCCchhhccCCCCcEEEEccCCCCCCHHHHHHHHHHHH
Confidence 899999999999999877765322 3333333 11111 1 1 1 1 3334566666666666
Q ss_pred HhCCCCCccccC--CCCCCCCchHhHHh--CCCeEEEeeeCCCCCCCCCcCCCCCcCCCCHHHHHHHH
Q psy9208 363 LFKPINATRLVQ--SKYPVGSDIELFQE--KNIPGVALLNDNAKYFWYHHTRADTMSVLDSDTLDLCT 426 (446)
Q Consensus 363 ~~~~~~~~~~~~--~~~~~gSD~~~F~~--~GIP~~~l~~~~~~y~~~yHt~~Dt~d~ld~~~l~~~~ 426 (446)
. .++++... .. .++|-..|.. .|||++.+.-.. .|.||+.-+ ++.+.++...
T Consensus 235 ~---~~Ip~Q~~~~~~--ggTDa~~~~~~~~Gi~t~~i~iP~----ry~Hs~~e~---~~~~Di~~~~ 290 (292)
T PF05343_consen 235 E---NGIPYQREVFSG--GGTDAGAIQLSGGGIPTAVISIPC----RYMHSPVEV---IDLDDIEATI 290 (292)
T ss_dssp H---TT--EEEEEESS--SSSTHHHHHTSTTSSEEEEEEEEE----BSTTSTTEE---EEHHHHHHHH
T ss_pred H---cCCCeEEEecCC--cccHHHHHHHcCCCCCEEEEeccc----ccCCCcceE---EEHHHHHHHh
Confidence 4 46665432 23 5799999885 599999998643 456997544 4455444443
No 47
>cd04820 PA_M28_1_1 PA_M28_1_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 1. A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt
Probab=97.32 E-value=0.00054 Score=59.75 Aligned_cols=50 Identities=24% Similarity=0.221 Sum_probs=35.6
Q ss_pred CCCc-eeeccccEEEEecCCcC-cch-----hhhhhhhhHHHHHHcCcEEEEEeccCC
Q psy9208 149 QGGI-TAEVAGKIVVFNQDFVS-YGE-----TVKYRSKGASVASKYGAVATLIRSVTP 199 (446)
Q Consensus 149 ~~gi-~a~v~GkIvlv~~~~~~-yg~-----~~~~~~~~~~~A~~~GA~avii~~~~~ 199 (446)
..++ ..+++|||||+.++.|. ++. +..++.| ...|.++||+|||+|++..
T Consensus 40 ~~Dy~~iDVkGKIVlv~~g~p~~~~~~~~~~~~~~~~K-~~~A~~~GA~aVIi~~d~~ 96 (137)
T cd04820 40 HDDYAGLDVKGKIVVVLSGGPAGIPSEEGAHAHSSNEK-ARYAAKAGAIGMITLTTPR 96 (137)
T ss_pred HhhccCCCCCCeEEEEEcCCCCccccccccccccHHHH-HHHHHHCCCeEEEEEeCCc
Confidence 3455 23699999999998763 111 1123445 9999999999999998743
No 48
>PRK09133 hypothetical protein; Provisional
Probab=97.30 E-value=0.00034 Score=73.81 Aligned_cols=75 Identities=25% Similarity=0.380 Sum_probs=59.1
Q ss_pred eeceEEEEEcCcCCCCcEEEEEecCCCCCC--------------------CCCcccCCCceeeE----------------
Q psy9208 258 NTRNTIVQIRGRECPDKVVITSGHLDSWDV--------------------GQGAMDDGGGAFIS---------------- 301 (446)
Q Consensus 258 ~s~NVia~i~G~~~~~~~Vvl~aH~Ds~~~--------------------g~Ga~DngsG~a~l---------------- 301 (446)
...|||++++|+ .+.+.|++.+|+|.++. |.|+.|+-+|++++
T Consensus 87 ~~~nli~~~~g~-~~~~~lll~~H~DtVp~~~~~W~~dPf~~~~~dg~iyGRGa~D~Kg~~aa~l~a~~~l~~~~~~~~~ 165 (472)
T PRK09133 87 RKGNLVARLRGT-DPKKPILLLAHMDVVEAKREDWTRDPFKLVEENGYFYGRGTSDDKADAAIWVATLIRLKREGFKPKR 165 (472)
T ss_pred CceeEEEEecCC-CCCCcEEEEeecccCCCChhcCCCCCCcceEeCCEEEecCcccchHHHHHHHHHHHHHHhcCCCCCC
Confidence 457999999886 45578999999999763 57999999999877
Q ss_pred ---EEeeCccc-cccccHHHHHHHhHhhhcceEEEEE
Q psy9208 302 ---GILWTAEE-QGYVGAIAYVKKHQEELKNITVAME 334 (446)
Q Consensus 302 ---f~~~~aEE-~Gl~GS~~y~~~~~~~~~~i~~~in 334 (446)
|++...|| .|..|++++++++.... +..++|+
T Consensus 166 ~i~~~~~~dEE~~g~~G~~~l~~~~~~~~-~~~~~i~ 201 (472)
T PRK09133 166 DIILALTGDEEGTPMNGVAWLAENHRDLI-DAEFALN 201 (472)
T ss_pred CEEEEEECccccCccchHHHHHHHHhhcc-CeEEEEE
Confidence 88999999 78999999998765322 2234555
No 49
>TIGR01910 DapE-ArgE acetylornithine deacetylase or succinyl-diaminopimelate desuccinylase. This group of sequences contains annotations for both acetylornithine deacetylase and succinyl-diaminopimelate desuccinylase, but does not contain any members with experimental characterization. Bacillus, Staphylococcus and Sulfolobus species contain multiple hits to this subfamily and each may have a separate activity. Determining which is which must await further laboratory research.
Probab=97.19 E-value=0.00069 Score=69.15 Aligned_cols=61 Identities=28% Similarity=0.389 Sum_probs=51.3
Q ss_pred ceEEEEEcCcCCCCcEEEEEecCCCCCCC---------------------CCcccCCCceeeE-----------------
Q psy9208 260 RNTIVQIRGRECPDKVVITSGHLDSWDVG---------------------QGAMDDGGGAFIS----------------- 301 (446)
Q Consensus 260 ~NVia~i~G~~~~~~~Vvl~aH~Ds~~~g---------------------~Ga~DngsG~a~l----------------- 301 (446)
+|+++.++|. ...+.|++.+|+|+++.+ .|+.|+.+|++++
T Consensus 52 ~~~~~~~~g~-~~~~~ill~~H~DtVp~~~~~~w~~~Pf~~~~~~g~i~grG~~D~k~~~a~~l~a~~~l~~~~~~~~~~ 130 (375)
T TIGR01910 52 GKVVVKEPGN-GNEKSLIFNGHYDVVPAGDLELWKTDPFKPVEKDGKLYGRGATDMKGGLVALLYALKAIREAGIKPNGN 130 (375)
T ss_pred cceEEeccCC-CCCCEEEEecccccccCCChhhCcCCCCCcEEECCEEEecCccccchHHHHHHHHHHHHHHcCCCCCcc
Confidence 4688888875 345689999999999864 5889999998766
Q ss_pred --EEeeCccccccccHHHHHHH
Q psy9208 302 --GILWTAEEQGYVGAIAYVKK 321 (446)
Q Consensus 302 --f~~~~aEE~Gl~GS~~y~~~ 321 (446)
|+++..||.|..|+++++++
T Consensus 131 i~~~~~~~EE~g~~G~~~~~~~ 152 (375)
T TIGR01910 131 IILQSVVDEESGEAGTLYLLQR 152 (375)
T ss_pred EEEEEEcCcccCchhHHHHHHc
Confidence 89999999999999999976
No 50
>PRK13983 diaminopimelate aminotransferase; Provisional
Probab=97.14 E-value=0.00066 Score=69.70 Aligned_cols=63 Identities=29% Similarity=0.390 Sum_probs=52.4
Q ss_pred eceEEEEEcCcCCCCcEEEEEecCCCCCC---------------------CCCcccCCCceeeE----------------
Q psy9208 259 TRNTIVQIRGRECPDKVVITSGHLDSWDV---------------------GQGAMDDGGGAFIS---------------- 301 (446)
Q Consensus 259 s~NVia~i~G~~~~~~~Vvl~aH~Ds~~~---------------------g~Ga~DngsG~a~l---------------- 301 (446)
..|++++++|. .+.+.|++.+|+|.++. |.|+.|+-.|++++
T Consensus 63 ~~nl~~~~~g~-~~~~~lll~~H~Dtvp~~~~~~W~~~p~~~~~~~g~lyGrG~~D~K~g~~a~l~a~~~l~~~~~~~~~ 141 (400)
T PRK13983 63 RPNIVAKIPGG-DGKRTLWIISHMDVVPPGDLSLWETDPFKPVVKDGKIYGRGSEDNGQGIVSSLLALKALMDLGIRPKY 141 (400)
T ss_pred CccEEEEecCC-CCCCeEEEEeeccccCCCCcccccCCCCcceeeCCEEEecCccCccchHHHHHHHHHHHHHhCCCCCC
Confidence 58999999886 45568999999999985 36789998888765
Q ss_pred ---EEeeCccccccc-cHHHHHHHh
Q psy9208 302 ---GILWTAEEQGYV-GAIAYVKKH 322 (446)
Q Consensus 302 ---f~~~~aEE~Gl~-GS~~y~~~~ 322 (446)
|++...||.|.. |.+++++.+
T Consensus 142 ~v~~~~~~dEE~g~~~g~~~~~~~~ 166 (400)
T PRK13983 142 NLGLAFVSDEETGSKYGIQYLLKKH 166 (400)
T ss_pred cEEEEEEeccccCCcccHHHHHhhc
Confidence 999999998874 888988764
No 51
>PRK12891 allantoate amidohydrolase; Reviewed
Probab=97.13 E-value=0.00039 Score=72.14 Aligned_cols=59 Identities=31% Similarity=0.436 Sum_probs=48.6
Q ss_pred ceEEEEEcCcCCCCcEEEEEecCCCCCCCCCcccCCCceeeE-------------------EEeeCccccc-----cccH
Q psy9208 260 RNTIVQIRGRECPDKVVITSGHLDSWDVGQGAMDDGGGAFIS-------------------GILWTAEEQG-----YVGA 315 (446)
Q Consensus 260 ~NVia~i~G~~~~~~~Vvl~aH~Ds~~~g~Ga~DngsG~a~l-------------------f~~~~aEE~G-----l~GS 315 (446)
.||++.++|.....+.|++++|+|+++.| |..|+-+|++++ |++|..||.| ++||
T Consensus 63 gNl~a~~~g~~~~~~~l~~~~H~DtVp~g-g~~D~k~Gv~a~l~a~~~l~~~~~~~~~~i~v~~~~dEE~~~f~~~~~Gs 141 (414)
T PRK12891 63 GNLFARRAGRDPDAAPVMTGSHADSQPTG-GRYDGIYGVLGGLEVVRALNDAGIETERPVDVVIWTNEEGSRFAPSMVGS 141 (414)
T ss_pred CCEEEEecCCCCCCCeEEEEecccCCCCC-ccccchhhHHHHHHHHHHHHHcCCCCCCCeEEEEecccccCcCCcccccH
Confidence 49999999863234789999999999976 778999999766 9999999985 5799
Q ss_pred HHHH
Q psy9208 316 IAYV 319 (446)
Q Consensus 316 ~~y~ 319 (446)
..+.
T Consensus 142 ~~~~ 145 (414)
T PRK12891 142 GVFF 145 (414)
T ss_pred HHHh
Confidence 8663
No 52
>PRK07906 hypothetical protein; Provisional
Probab=97.10 E-value=0.0014 Score=68.07 Aligned_cols=66 Identities=26% Similarity=0.350 Sum_probs=53.4
Q ss_pred eeceEEEEEcCcCCCCcEEEEEecCCCCCC--------------------CCCcccCCCceeeE----------------
Q psy9208 258 NTRNTIVQIRGRECPDKVVITSGHLDSWDV--------------------GQGAMDDGGGAFIS---------------- 301 (446)
Q Consensus 258 ~s~NVia~i~G~~~~~~~Vvl~aH~Ds~~~--------------------g~Ga~DngsG~a~l---------------- 301 (446)
...||+++++|+....+.|++.+|+|.++. |.|+.|+-+|++++
T Consensus 50 ~~~nv~~~~~g~~~~~~~lll~~H~DtVp~~~~~W~~~Pf~~~~~dg~iyGrG~~D~Kg~~a~~l~a~~~l~~~~~~~~~ 129 (426)
T PRK07906 50 GRANVVARLPGADPSRPALLVHGHLDVVPAEAADWSVHPFSGEIRDGYVWGRGAVDMKDMDAMMLAVVRHLARTGRRPPR 129 (426)
T ss_pred CceEEEEEEeCCCCCCCcEEEEcccccCCCCcccCccCCCCceeeCCEEEecCccccchHHHHHHHHHHHHHHcCCCCCc
Confidence 357999999886323468999999999974 36889999998766
Q ss_pred ---EEeeCccccc-cccHHHHHHHhH
Q psy9208 302 ---GILWTAEEQG-YVGAIAYVKKHQ 323 (446)
Q Consensus 302 ---f~~~~aEE~G-l~GS~~y~~~~~ 323 (446)
|+++..||.| ..|++++++++.
T Consensus 130 ~i~~~~~~dEE~g~~~g~~~l~~~~~ 155 (426)
T PRK07906 130 DLVFAFVADEEAGGTYGAHWLVDNHP 155 (426)
T ss_pred cEEEEEecCcccchhhhHHHHHHHHH
Confidence 8999999986 569999988754
No 53
>TIGR01883 PepT-like peptidase T-like protein. This model represents a clade of enzymes closely related to Peptidase T, an aminotripeptidase found in bacteria. This clade consists of gram positive bacteria of which several additionally contain a Peptidase T gene.
Probab=96.98 E-value=0.0014 Score=66.51 Aligned_cols=62 Identities=24% Similarity=0.350 Sum_probs=51.4
Q ss_pred eceEEEEEcCcCCCCcEEEEEecCCCCCC--------------CCCc----ccCCCceeeE------------------E
Q psy9208 259 TRNTIVQIRGRECPDKVVITSGHLDSWDV--------------GQGA----MDDGGGAFIS------------------G 302 (446)
Q Consensus 259 s~NVia~i~G~~~~~~~Vvl~aH~Ds~~~--------------g~Ga----~DngsG~a~l------------------f 302 (446)
..|+++.++|+ .+.+.|++.+|+|.++. |.|. .|+-+|++++ |
T Consensus 49 ~~~~~~~~~g~-~~~~~i~l~~H~D~V~~~~~~~~~~~~~~~~g~G~~~~g~D~k~g~a~~l~~~~~l~~~~~~~~~v~~ 127 (361)
T TIGR01883 49 DNNLIARLPGT-VKFDTIFFCGHMDTVPPGAGPEPVVEDGIFTSLGGTILGADDKAGVAAMLEAMDVLSTEETPHGTIEF 127 (361)
T ss_pred CceEEEEEeCC-CCCCcEEEEeeccccCCCCCCCceecCCeEecCCCeEeeccccHHHHHHHHHHHHHHhcCCCCCCEEE
Confidence 57999999886 45578999999999884 3555 6888888765 9
Q ss_pred EeeCccccccccHHHHHHH
Q psy9208 303 ILWTAEEQGYVGAIAYVKK 321 (446)
Q Consensus 303 ~~~~aEE~Gl~GS~~y~~~ 321 (446)
+|+.+||.|..|++.+.+.
T Consensus 128 ~~~~~EE~g~~G~~~~~~~ 146 (361)
T TIGR01883 128 IFTVKEELGLIGMRLFDES 146 (361)
T ss_pred EEEcccccCchhHhHhChh
Confidence 9999999999999998764
No 54
>KOG2442|consensus
Probab=96.97 E-value=0.0024 Score=65.26 Aligned_cols=85 Identities=24% Similarity=0.223 Sum_probs=61.2
Q ss_pred eccccEEEEecCCcCcchhhhhhhhhHHHHHHcCcEEEEEeccCCCCCCCCCCccccCCCCCCCCCEeEcCHHHHHHHHH
Q psy9208 155 EVAGKIVVFNQDFVSYGETVKYRSKGASVASKYGAVATLIRSVTPYSLATPHTGHQSYDAAVKPIPTACIAPEYAEMLYR 234 (446)
Q Consensus 155 ~v~GkIvlv~~~~~~yg~~~~~~~~~~~~A~~~GA~avii~~~~~~~~~~p~~g~~~~~~~~~~iP~~~Is~~~~~~L~~ 234 (446)
+.+||++++.||.|+|- +| +..|+++||.|++++|+...- ..+.-+ .++......||++.|++.+++.|..
T Consensus 93 kl~~~~~~v~RGnC~Ft------~K-a~~Aq~aGAsaLliin~~~d~-~~~~~~-~~~~~~dv~IPv~mi~~~~~~~l~~ 163 (541)
T KOG2442|consen 93 KLSGKVALVFRGNCSFT------EK-AKLAQAAGASALLIINNKKDL-LFMPCG-NKETSLDVTIPVAMISYSDGRDLNK 163 (541)
T ss_pred cccceeEEEecccceee------hh-hhhhhhcCceEEEEEcCchhh-ccCCCC-CCCccccccceEEEEEhhhHHHHHh
Confidence 47899999999987664 34 899999999999999974321 111111 1122345679999999999999998
Q ss_pred HHhCCCCceEEEEEE
Q psy9208 235 MYRRGDGPVVVSINI 249 (446)
Q Consensus 235 ~l~~g~~pv~v~l~~ 249 (446)
....+.+ |++.+..
T Consensus 164 ~~~~~~~-V~~~lYa 177 (541)
T KOG2442|consen 164 STRSNDN-VELALYA 177 (541)
T ss_pred hhccCCe-EEEEEEC
Confidence 7777765 5555443
No 55
>PRK12892 allantoate amidohydrolase; Reviewed
Probab=96.81 E-value=0.00096 Score=68.99 Aligned_cols=60 Identities=30% Similarity=0.595 Sum_probs=49.0
Q ss_pred ceEEEEEcCcCCCCcEEEEEecCCCCCCCCCcccCCCceeeE-------------------EEeeCcccc-----ccccH
Q psy9208 260 RNTIVQIRGRECPDKVVITSGHLDSWDVGQGAMDDGGGAFIS-------------------GILWTAEEQ-----GYVGA 315 (446)
Q Consensus 260 ~NVia~i~G~~~~~~~Vvl~aH~Ds~~~g~Ga~DngsG~a~l-------------------f~~~~aEE~-----Gl~GS 315 (446)
.|++++++|. .+.+.|++++|+|.++.+ |-.|+-.|++++ |+++..||. |+.||
T Consensus 62 ~nl~a~~~g~-~~~~~l~l~gH~DtVp~~-g~~dg~~Gvaa~l~a~~~l~~~~~~~~~~i~~~~~~dEE~~~~~~~~~Gs 139 (412)
T PRK12892 62 GNVFGRLPGP-GPGPALLVGSHLDSQNLG-GRYDGALGVVAGLEAARALNEHGIATRHPLDVVAWCDEEGSRFTPGFLGS 139 (412)
T ss_pred CcEEEEecCC-CCCCeEEEEccccCCCCC-CcccchHHHHHHHHHHHHHHHcCCCCCCCeEEEEecCcccccccCccccH
Confidence 4999999986 455789999999999875 556666677655 999999998 57899
Q ss_pred HHHHHH
Q psy9208 316 IAYVKK 321 (446)
Q Consensus 316 ~~y~~~ 321 (446)
++++.+
T Consensus 140 ~~~~~~ 145 (412)
T PRK12892 140 RAYAGR 145 (412)
T ss_pred HHHHcC
Confidence 999854
No 56
>PRK12893 allantoate amidohydrolase; Reviewed
Probab=96.81 E-value=0.00099 Score=68.91 Aligned_cols=62 Identities=24% Similarity=0.383 Sum_probs=50.4
Q ss_pred ceEEEEEcCcCCCCcEEEEEecCCCCCCCCCcccCCCceeeE-------------------EEeeCccccc-----cccH
Q psy9208 260 RNTIVQIRGRECPDKVVITSGHLDSWDVGQGAMDDGGGAFIS-------------------GILWTAEEQG-----YVGA 315 (446)
Q Consensus 260 ~NVia~i~G~~~~~~~Vvl~aH~Ds~~~g~Ga~DngsG~a~l-------------------f~~~~aEE~G-----l~GS 315 (446)
.||+++++|...+++.|++.+|+|.++.+ |..|+-+|++++ |+++..||.| ++|+
T Consensus 63 ~n~~a~~~g~~~~~~~l~l~~H~DtVp~~-g~~dgk~gvaa~l~a~~~l~~~~~~~~~~v~~~~~~dEE~g~~~~~~~G~ 141 (412)
T PRK12893 63 GNLFGRRAGTDPDAPPVLIGSHLDTQPTG-GRFDGALGVLAALEVVRTLNDAGIRTRRPIEVVSWTNEEGARFAPAMLGS 141 (412)
T ss_pred CcEEEEeCCCCCCCCEEEEEecccCCCCC-CcccchhhHHHHHHHHHHHHHcCCCCCCCeEEEEEccccccccccccccH
Confidence 39999998862235789999999999864 667777888666 9999999986 8899
Q ss_pred HHHHHHh
Q psy9208 316 IAYVKKH 322 (446)
Q Consensus 316 ~~y~~~~ 322 (446)
.++...+
T Consensus 142 ~~~~~~~ 148 (412)
T PRK12893 142 GVFTGAL 148 (412)
T ss_pred HHHhCcC
Confidence 9988653
No 57
>PRK08596 acetylornithine deacetylase; Validated
Probab=96.78 E-value=0.0035 Score=65.17 Aligned_cols=88 Identities=25% Similarity=0.251 Sum_probs=63.0
Q ss_pred HHHHHHHHHhCCCCceEEEEEEEeEEeCCceeceEEEEEcCcCCC--CcEEEEEecCCCCCC------------------
Q psy9208 228 YAEMLYRMYRRGDGPVVVSINIDARNVGTTNTRNTIVQIRGRECP--DKVVITSGHLDSWDV------------------ 287 (446)
Q Consensus 228 ~~~~L~~~l~~g~~pv~v~l~~~~~~~~~~~s~NVia~i~G~~~~--~~~Vvl~aH~Ds~~~------------------ 287 (446)
.++.|.+.+++-. +.++ .... . ....|||++++|+ .+ .+.|++.+|+|.++.
T Consensus 38 ~a~~l~~~l~~~G--~~~~--~~~~--~-~~~~nvia~~~g~-~~~~~~~lll~~H~DtVp~~~~~~W~~~Pf~~~~~~g 109 (421)
T PRK08596 38 AQEFIAEFLRKLG--FSVD--KWDV--Y-PNDPNVVGVKKGT-ESDAYKSLIINGHMDVAEVSADEAWETNPFEPTIKDG 109 (421)
T ss_pred HHHHHHHHHHHCC--CeEE--EEEc--c-CCCceEEEEecCC-CCCCCcEEEEeccccccCCCCccccccCCCCcEEECC
Confidence 4677777776421 4332 2111 1 1236999999885 33 257999999999653
Q ss_pred ---CCCcccCCCceeeE-------------------EEeeCccccccccHHHHHHHhH
Q psy9208 288 ---GQGAMDDGGGAFIS-------------------GILWTAEEQGYVGAIAYVKKHQ 323 (446)
Q Consensus 288 ---g~Ga~DngsG~a~l-------------------f~~~~aEE~Gl~GS~~y~~~~~ 323 (446)
|.|+.|+-+|++++ |++...||.|..|+++++++..
T Consensus 110 ~lyGrG~~D~Kgg~a~~l~a~~~l~~~~~~~~~~v~~~~~~dEE~g~~G~~~~~~~~~ 167 (421)
T PRK08596 110 WLYGRGAADMKGGLAGALFAIQLLHEAGIELPGDLIFQSVIGEEVGEAGTLQCCERGY 167 (421)
T ss_pred EEEeccccccchHHHHHHHHHHHHHHcCCCCCCcEEEEEEeccccCCcCHHHHHhcCC
Confidence 37899999998776 8899999999999999998643
No 58
>PRK09290 allantoate amidohydrolase; Reviewed
Probab=96.71 E-value=0.0012 Score=68.46 Aligned_cols=62 Identities=26% Similarity=0.402 Sum_probs=49.6
Q ss_pred ceEEEEEcCcCCCCcEEEEEecCCCCCCCCCcccCCCceeeE-------------------EEeeCcccc-----ccccH
Q psy9208 260 RNTIVQIRGRECPDKVVITSGHLDSWDVGQGAMDDGGGAFIS-------------------GILWTAEEQ-----GYVGA 315 (446)
Q Consensus 260 ~NVia~i~G~~~~~~~Vvl~aH~Ds~~~g~Ga~DngsG~a~l-------------------f~~~~aEE~-----Gl~GS 315 (446)
.||+++++|+..+.+.|++.+|+|+++.+ |..|+-+|++++ |++...||. |+.|+
T Consensus 60 ~nl~a~~~g~~~~~~~l~l~gH~DtVp~~-g~~d~k~g~aa~l~a~~~l~~~~~~~~~~i~~~~~~dEE~g~~g~~~~G~ 138 (413)
T PRK09290 60 GNLFGRLEGRDPDAPAVLTGSHLDTVPNG-GRFDGPLGVLAGLEAVRTLNERGIRPRRPIEVVAFTNEEGSRFGPAMLGS 138 (413)
T ss_pred CcEEEEecCCCCCCCEEEEecCccCCCCC-CCcCCHHHHHHHHHHHHHHHHcCCCCCCCeEEEEEcCCccccccCccccH
Confidence 59999998752235789999999999875 666777888766 889999998 57899
Q ss_pred HHHHHHh
Q psy9208 316 IAYVKKH 322 (446)
Q Consensus 316 ~~y~~~~ 322 (446)
+++++++
T Consensus 139 ~~~~~~~ 145 (413)
T PRK09290 139 RVFTGAL 145 (413)
T ss_pred HHHHccc
Confidence 9988553
No 59
>PRK13381 peptidase T; Provisional
Probab=96.65 E-value=0.0017 Score=67.03 Aligned_cols=52 Identities=17% Similarity=0.263 Sum_probs=41.9
Q ss_pred CCchHhHHhCCCeEEEeeeCCCCCCCCCcCCCCCcCCCCHHHHHHHHHHHHHHHHHHhc
Q psy9208 380 GSDIELFQEKNIPGVALLNDNAKYFWYHHTRADTMSVLDSDTLDLCTALWGGVAYILAD 438 (446)
Q Consensus 380 gSD~~~F~~~GIP~~~l~~~~~~y~~~yHt~~Dt~d~ld~~~l~~~~~~~a~~~~~lA~ 438 (446)
++|...|...|||++.+..++.. -|++ -+.++.+.+...++++..++..+|.
T Consensus 353 ~tDa~~~~~~giP~v~~GpG~~~----aH~~---dE~v~i~~l~~~~~v~~~~~~~~~~ 404 (404)
T PRK13381 353 GTDGAALSAKGLPTPNLFTGAHN----FHSR---FEFLPVSSFVKSYEVTITICLLAAK 404 (404)
T ss_pred cchHHHHhcCCCCeEEECccccC----CcCc---ceeEEHHHHHHHHHHHHHHHHHhcC
Confidence 58887777789999998776532 3774 4779999999999999999888763
No 60
>PRK08262 hypothetical protein; Provisional
Probab=96.58 E-value=0.0037 Score=66.22 Aligned_cols=63 Identities=29% Similarity=0.364 Sum_probs=52.5
Q ss_pred ceEEEEEcCcCCCC-cEEEEEecCCCCCC-----------------------CCCcccCCCceeeE--------------
Q psy9208 260 RNTIVQIRGRECPD-KVVITSGHLDSWDV-----------------------GQGAMDDGGGAFIS-------------- 301 (446)
Q Consensus 260 ~NVia~i~G~~~~~-~~Vvl~aH~Ds~~~-----------------------g~Ga~DngsG~a~l-------------- 301 (446)
.|+++.++|+ .++ +.|++.+|+|.++. |.|+.|+-+|++++
T Consensus 98 ~~vv~~~~g~-~~~~~~ill~gH~DvVp~~~~~~~~W~~~Pf~~~~~dg~lyGRG~~D~Kg~~aa~L~A~~~l~~~~~~l 176 (486)
T PRK08262 98 HSLLYTWKGS-DPSLKPIVLMAHQDVVPVAPGTEGDWTHPPFSGVIADGYVWGRGALDDKGSLVAILEAAEALLAQGFQP 176 (486)
T ss_pred ccEEEEEECC-CCCCCeEEEECcccccCCCCCCcccCccCCCceEeeCCEEEecCccccchhHHHHHHHHHHHHHcCCCC
Confidence 6899999886 444 78999999999874 35888988888776
Q ss_pred -----EEeeCccccccccHHHHHHHhH
Q psy9208 302 -----GILWTAEEQGYVGAIAYVKKHQ 323 (446)
Q Consensus 302 -----f~~~~aEE~Gl~GS~~y~~~~~ 323 (446)
|++.+.||.|..|++++++.+.
T Consensus 177 ~~~I~llf~~dEE~g~~G~~~l~~~l~ 203 (486)
T PRK08262 177 RRTIYLAFGHDEEVGGLGARAIAELLK 203 (486)
T ss_pred CCeEEEEEecccccCCcCHHHHHHHHH
Confidence 8999999999889999997654
No 61
>TIGR03107 glu_aminopep glutamyl aminopeptidase. This model represents the M42.001 clade within MEROPS family M42. M42 includes glutamyl aminopeptidase as in the present model, deblocking aminopeptidases as from Pyrococcus horikoshii and related species, and endo-1,4-beta-glucanase (cellulase M) as from Clostridium thermocellum. The current family includes
Probab=96.57 E-value=0.0068 Score=61.38 Aligned_cols=130 Identities=18% Similarity=0.149 Sum_probs=82.9
Q ss_pred cccCCCceeeE-----------------EEeeCccccccccHHHHHHHhHhhhcceEEEEEecCCCCCc----------c
Q psy9208 291 AMDDGGGAFIS-----------------GILWTAEEQGYVGAIAYVKKHQEELKNITVAMESDDGTFTP----------F 343 (446)
Q Consensus 291 a~DngsG~a~l-----------------f~~~~aEE~Gl~GS~~y~~~~~~~~~~i~~~in~D~g~~~~----------~ 343 (446)
|.||=.|++++ |+|..-||.|+.|++.-+.....+ ..|-+|...... .
T Consensus 176 alDdR~g~a~l~e~l~~l~~~~~~~~l~~~~tvqEEvG~rGA~~aa~~i~pD-----~aI~vDv~~~~d~~~~~~~~lg~ 250 (350)
T TIGR03107 176 AWDNRYGVLMILELLESLKDQELPNTLIAGANVQEEVGLRGAHVSTTKFNPD-----IFFAVDCSPAGDIYGDQGGKLGE 250 (350)
T ss_pred ccccHHHHHHHHHHHHHhhhcCCCceEEEEEEChhhcCchhhhhHHhhCCCC-----EEEEEecCCcCCCCCCCccccCC
Confidence 45677777766 788899999999999655544322 455556421110 0
Q ss_pred c--e-----eeecChhHHHHHHHHHHHhCCCCCccccC-CCCCCCCchH--hHHhCCCeEEEeeeCCCCCCCCCcCCCCC
Q psy9208 344 G--L-----SLKGSPEAACILNKVLRLFKPINATRLVQ-SKYPVGSDIE--LFQEKNIPGVALLNDNAKYFWYHHTRADT 413 (446)
Q Consensus 344 ~--~-----~~~gs~~l~~l~~~~~~~~~~~~~~~~~~-~~~~~gSD~~--~F~~~GIP~~~l~~~~~~y~~~yHt~~Dt 413 (446)
| + .....+.+.+.+.+.++. .+++.... .. .|+|-. .|...|||++.+.-.- .|-||+
T Consensus 251 Gp~i~~~D~~~i~~~~l~~~l~~~A~~---~~I~~Q~~~~~--gGtDa~~~~~~~~Gvpt~~i~ip~----Ry~Hs~--- 318 (350)
T TIGR03107 251 GTLLRFFDPGHIMLPRMKDFLLTTAEE---AGIKYQYYVAK--GGTDAGAAHLKNSGVPSTTIGVCA----RYIHSH--- 318 (350)
T ss_pred CceEEEecCCCCCCHHHHHHHHHHHHH---cCCCcEEecCC--CCchHHHHHHhCCCCcEEEEccCc----ccccCh---
Confidence 1 2 123344566666666654 45554332 22 468876 4557899999998643 355996
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHHh
Q psy9208 414 MSVLDSDTLDLCTALWGGVAYILA 437 (446)
Q Consensus 414 ~d~ld~~~l~~~~~~~a~~~~~lA 437 (446)
.+.++.+.+.+..+++..++-.|.
T Consensus 319 ~e~i~~~D~~~~~~Ll~~~i~~l~ 342 (350)
T TIGR03107 319 QTLYSIDDFLAAQAFLQAIVKKLD 342 (350)
T ss_pred hheeeHHHHHHHHHHHHHHHHhcC
Confidence 567788888888888888776553
No 62
>KOG2657|consensus
Probab=96.51 E-value=0.01 Score=61.35 Aligned_cols=179 Identities=16% Similarity=0.169 Sum_probs=103.2
Q ss_pred ceeceEEEEEcCc-----CCC-CcEEEEEecCCCCCC----CCCcccCCCceeeE---------------------EEee
Q psy9208 257 TNTRNTIVQIRGR-----ECP-DKVVITSGHLDSWDV----GQGAMDDGGGAFIS---------------------GILW 305 (446)
Q Consensus 257 ~~s~NVia~i~G~-----~~~-~~~Vvl~aH~Ds~~~----g~Ga~DngsG~a~l---------------------f~~~ 305 (446)
-..+||....+.. .++ .++||..+-+|+... .+|+.---++...+ |++|
T Consensus 155 l~~ynvws~l~pi~ts~tnk~~~~vvv~tarmdsrsfF~n~s~Ga~S~~~slv~~laaa~al~r~pai~nl~rnV~f~~f 234 (596)
T KOG2657|consen 155 LHSYNVWSFLTPIPTSPTNKTISKVVVVTARMDSRSFFPNISVGAVSVLTSLVSVLAAARALKRQPAINNLNRNVFFAFF 234 (596)
T ss_pred cCCccceeccCccccccccCcCcceeeeeeecccccccccccCCccccchhHHHHHHHHHHhccCcccccccceeEEEEe
Confidence 5667887766532 123 689999999999653 34443222222111 9999
Q ss_pred CccccccccHHHHHHHhH---hh--hcc---eEEEEEecC-CCCCccceeeecC----h----hHHHHHHHHHHHhCCCC
Q psy9208 306 TAEEQGYVGAIAYVKKHQ---EE--LKN---ITVAMESDD-GTFTPFGLSLKGS----P----EAACILNKVLRLFKPIN 368 (446)
Q Consensus 306 ~aEE~Gl~GS~~y~~~~~---~~--~~~---i~~~in~D~-g~~~~~~~~~~gs----~----~l~~l~~~~~~~~~~~~ 368 (446)
.+|-.+.+||..++-++. .+ .++ |..++++-. |-.....++..-. . +..+.++.+.+.+...+
T Consensus 235 ~get~~ylgS~r~~yeme~gk~pva~~s~~~iD~~LEiGqvg~~~s~kl~~~~d~~~~~sv~nqtld~L~~~ekSlrs~~ 314 (596)
T KOG2657|consen 235 NGETLDYLGSGRAAYEMENGKFPVAIRSDNEIDYILEIGQVGVAKSRKLYVHVDGERYQSVKNQTLDVLDRIEKSLRSHA 314 (596)
T ss_pred ecceeeeccchhhhhHhhcCCCCeeeccCccchheeeecccccccCceEEEEeccchhhhHHHHHHHHHHHHHhcccccC
Confidence 999999999997775542 21 222 555555544 2222333322111 1 23344444444332222
Q ss_pred CccccCCCCCCCCch------HhHHh--CCCeEEEeeeCCCCC-CCCCcCCCCCcCCCCHHHHHHHHHHHHHHHHHHhc
Q psy9208 369 ATRLVQSKYPVGSDI------ELFQE--KNIPGVALLNDNAKY-FWYHHTRADTMSVLDSDTLDLCTALWGGVAYILAD 438 (446)
Q Consensus 369 ~~~~~~~~~~~gSD~------~~F~~--~GIP~~~l~~~~~~y-~~~yHt~~Dt~d~ld~~~l~~~~~~~a~~~~~lA~ 438 (446)
.... .+. ..||+ ..|++ ..+-++-|...+..| ..+||+..|+.+|+|...-...+.+-+...+.||.
T Consensus 315 f~ll-~~s--~~s~~lPPsSlqsFlR~dpn~saVvLad~~~~f~NKyYhSilDdaeNin~sy~~al~evea~~~~ilas 390 (596)
T KOG2657|consen 315 FDLL-KPS--GSSDRLPPSSLQSFLRADPNVSAVVLADYGKEFENKYYHSILDDAENINDSYEKALQEVEAVSTAILAS 390 (596)
T ss_pred eeee-cCC--CCCCCCChHHHHHHHhhCCCcceEEeccCCchhhhhhhhhhhcchhhccchhhhhhchhhhhhhcchHh
Confidence 2211 111 22444 56886 578888887654323 26899999999999988776666655555555544
No 63
>TIGR01893 aa-his-dipept aminoacyl-histidine dipeptidase.
Probab=96.42 E-value=0.0027 Score=67.16 Aligned_cols=62 Identities=21% Similarity=0.320 Sum_probs=48.8
Q ss_pred ceEEEEEcCcC--CCCcEEEEEecCCCCCCC------------------------CCcc---cCCCceeeE---------
Q psy9208 260 RNTIVQIRGRE--CPDKVVITSGHLDSWDVG------------------------QGAM---DDGGGAFIS--------- 301 (446)
Q Consensus 260 ~NVia~i~G~~--~~~~~Vvl~aH~Ds~~~g------------------------~Ga~---DngsG~a~l--------- 301 (446)
.|+++.++|.. ...+.|++.+|+|+++.+ +|+. |+..|++++
T Consensus 47 ~n~~~~~~~~~g~~~~~~l~l~~HlDtV~~~~~~~~~~w~~~p~~~~~~~~~i~GrG~~lg~D~k~gva~~l~~~~~~~~ 126 (477)
T TIGR01893 47 GNVLIRKPATPGYENHPPIVLQGHMDMVCEKNEDSLHDFEKDPIELIIDGDWLKARGTTLGADNGIGVAMGLAILEDNNL 126 (477)
T ss_pred CeEEEEEcCCCCCCCCCeEEEEeeccccCCCCCCCCCCCCCCCeEEEEeCCEEEECCccccccccHHHHHHHHHHhcCCC
Confidence 59999998742 123679999999998753 4543 888898655
Q ss_pred ------EEeeCccccccccHHHHHHH
Q psy9208 302 ------GILWTAEEQGYVGAIAYVKK 321 (446)
Q Consensus 302 ------f~~~~aEE~Gl~GS~~y~~~ 321 (446)
++++..||.|+.||+++...
T Consensus 127 ~~~~i~~~~~~dEE~g~~Gs~~l~~~ 152 (477)
T TIGR01893 127 KHPPLELLFTVDEETGMDGALGLDEN 152 (477)
T ss_pred CCCCEEEEEEeccccCchhhhhcChh
Confidence 88899999999999999764
No 64
>PRK09961 exoaminopeptidase; Provisional
Probab=96.39 E-value=0.013 Score=59.33 Aligned_cols=129 Identities=22% Similarity=0.239 Sum_probs=84.6
Q ss_pred cccCCCceeeE-----------------EEeeCccccccccHHHHHHHhHhhhcceEEEEEecCCCCCc-----------
Q psy9208 291 AMDDGGGAFIS-----------------GILWTAEEQGYVGAIAYVKKHQEELKNITVAMESDDGTFTP----------- 342 (446)
Q Consensus 291 a~DngsG~a~l-----------------f~~~~aEE~Gl~GS~~y~~~~~~~~~~i~~~in~D~g~~~~----------- 342 (446)
+.||=.|++++ |+|+.-||.|+.|++.-+..... .+.|-+|.....+
T Consensus 164 alDnR~g~~~lle~l~~l~~~~~~~~v~~~~tvqEEvG~rGa~~aa~~i~p-----d~~I~vDv~~~~d~~~~~~~~~~~ 238 (344)
T PRK09961 164 AFDDRLGCYLLVTLLRELHDAELPAEVWLVASSSEEVGLRGGQTATRAVSP-----DVAIVLDTACWAKNFDYGAANHRQ 238 (344)
T ss_pred echhhHhHHHHHHHHHHhhhcCCCceEEEEEEcccccchHHHHHHHhccCC-----CEEEEEeccCCCCCCCCCCCcccc
Confidence 45666676665 89999999999999887765432 2355566521110
Q ss_pred --cc--e-----eeecChhHHHHHHHHHHHhCCCCCcccc--CCCCCCCCchHhHHh--CCCeEEEeeeCCCCCCCCCcC
Q psy9208 343 --FG--L-----SLKGSPEAACILNKVLRLFKPINATRLV--QSKYPVGSDIELFQE--KNIPGVALLNDNAKYFWYHHT 409 (446)
Q Consensus 343 --~~--~-----~~~gs~~l~~l~~~~~~~~~~~~~~~~~--~~~~~~gSD~~~F~~--~GIP~~~l~~~~~~y~~~yHt 409 (446)
.| + .....+.+.+++.++++. .+++... ... .|||-..|.. .|||++.+..+. . +-||
T Consensus 239 lg~Gp~i~~~D~~~i~~~~l~~~l~~~A~~---~~Ip~Q~~~~~g--gGTDa~~~~~~~~Giptv~ig~p~-r---y~Hs 309 (344)
T PRK09961 239 IGNGPMLVLSDKSLIAPPKLTAWIETVAAE---IGIPLQADMFSN--GGTDGGAVHLTGTGVPTVVMGPAT-R---HGHC 309 (344)
T ss_pred cCCCceEEEccCCcCCCHHHHHHHHHHHHH---cCCCcEEEecCC--CcchHHHHHHhCCCCCEEEechhh-h---cccC
Confidence 01 1 123345666777777764 3455433 233 4699998875 899999987652 2 4588
Q ss_pred CCCCcCCCCHHHHHHHHHHHHHHHHHH
Q psy9208 410 RADTMSVLDSDTLDLCTALWGGVAYIL 436 (446)
Q Consensus 410 ~~Dt~d~ld~~~l~~~~~~~a~~~~~l 436 (446)
+ .+.++.+.+.+..+++..++-.+
T Consensus 310 ~---~E~v~~~D~~~~~~Ll~~~i~~l 333 (344)
T PRK09961 310 A---ASIADCRDILQMIQLLSALIQRL 333 (344)
T ss_pred h---hheEEHHHHHHHHHHHHHHHHHc
Confidence 6 57788888888888888877544
No 65
>TIGR01892 AcOrn-deacetyl acetylornithine deacetylase (ArgE). This model represents a clade of acetylornithine deacetylases from proteobacteria. This enzyme is the final step of the "acetylated" ornithine biosynthesis pathway. The enzyme is closely related to dapE, succinyl-diaminopimelate desuccinylase, and outside of this clade annotation is very inaccurate as to which function should be ascribed to genes.
Probab=96.34 E-value=0.011 Score=59.95 Aligned_cols=91 Identities=19% Similarity=0.133 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHhCCCCceEEEEEEEeEEeCCceeceEEEEEcCcCCCCcEEEEEecCCCCCC------------------
Q psy9208 226 PEYAEMLYRMYRRGDGPVVVSINIDARNVGTTNTRNTIVQIRGRECPDKVVITSGHLDSWDV------------------ 287 (446)
Q Consensus 226 ~~~~~~L~~~l~~g~~pv~v~l~~~~~~~~~~~s~NVia~i~G~~~~~~~Vvl~aH~Ds~~~------------------ 287 (446)
.+.++.|.+.++.-. +.+++. .. .......||++.++|+ ..+.|++.+|+|.++.
T Consensus 18 ~~~~~~l~~~l~~~G--~~~~~~--~~-~~~~~~~nl~~~~~~~--~~~~i~l~~H~Dtvp~~~~~w~~~Pf~~~~~~~~ 90 (364)
T TIGR01892 18 VDLIDWAQAYLEALG--FSVEVQ--PF-PDGAEKSNLVAVIGPS--GAGGLALSGHTDVVPYDDAAWTRDPFRLTEKDGR 90 (364)
T ss_pred HHHHHHHHHHHHHcC--CeEEEE--eC-CCCCccccEEEEecCC--CCCeEEEEcccccccCCCCcCCCCCCcceeeCCE
Confidence 456677777665321 332222 11 1112357999999663 3457999999999864
Q ss_pred --CCCcccCCCceeeE-----------------EEeeCccccccccHHHHHHHhH
Q psy9208 288 --GQGAMDDGGGAFIS-----------------GILWTAEEQGYVGAIAYVKKHQ 323 (446)
Q Consensus 288 --g~Ga~DngsG~a~l-----------------f~~~~aEE~Gl~GS~~y~~~~~ 323 (446)
|.|+.|+-+|++++ |++...||.|..|+++++++..
T Consensus 91 i~GrG~~D~Kg~~a~~l~a~~~l~~~~~~~~v~~~~~~~EE~g~~G~~~~~~~~~ 145 (364)
T TIGR01892 91 LYGRGTCDMKGFLACALAAAPDLAAEQLKKPLHLALTADEEVGCTGAPKMIEAGA 145 (364)
T ss_pred EEecCccccchHHHHHHHHHHHHHhcCcCCCEEEEEEeccccCCcCHHHHHHhcC
Confidence 37888888888766 8899999999999999998764
No 66
>PRK09104 hypothetical protein; Validated
Probab=96.29 E-value=0.005 Score=64.85 Aligned_cols=65 Identities=22% Similarity=0.282 Sum_probs=51.0
Q ss_pred eceEEEEEcCcCCCCcEEEEEecCCCCCC--------------------------CCCcccCCCceeeE-----------
Q psy9208 259 TRNTIVQIRGRECPDKVVITSGHLDSWDV--------------------------GQGAMDDGGGAFIS----------- 301 (446)
Q Consensus 259 s~NVia~i~G~~~~~~~Vvl~aH~Ds~~~--------------------------g~Ga~DngsG~a~l----------- 301 (446)
..||+++++|+....+.|++.+|+|.++. |.|+.|+-+|++++
T Consensus 68 ~~~l~a~~~g~~~~~~~lll~gH~DvVp~~~~~~W~~~Pf~~~~~~~~~~~~~lyGRG~~D~Kg~laa~l~a~~~l~~~~ 147 (464)
T PRK09104 68 HPMVVAHHEGPTGDAPHVLFYGHYDVQPVDPLDLWESPPFEPRIKETPDGRKVIVARGASDDKGQLMTFVEACRAWKAVT 147 (464)
T ss_pred CCEEEEEecCCCCCCCEEEEEecccCCCCCCcccCCCCCCcceEecCcCCcceEEEecccCCcHHHHHHHHHHHHHHHhc
Confidence 36999999875223578999999999653 34667777777666
Q ss_pred --------EEeeCccccccccHHHHHHHhH
Q psy9208 302 --------GILWTAEEQGYVGAIAYVKKHQ 323 (446)
Q Consensus 302 --------f~~~~aEE~Gl~GS~~y~~~~~ 323 (446)
|++.+.||.|..|..+|+.+..
T Consensus 148 ~~~~~~i~~~~~~dEE~g~~g~~~~l~~~~ 177 (464)
T PRK09104 148 GSLPVRVTILFEGEEESGSPSLVPFLEANA 177 (464)
T ss_pred CCCCCcEEEEEECccccCCccHHHHHHhhH
Confidence 8899999999999999998643
No 67
>PRK09864 putative peptidase; Provisional
Probab=96.27 E-value=0.017 Score=58.53 Aligned_cols=118 Identities=17% Similarity=0.155 Sum_probs=76.2
Q ss_pred EEeeCccccccccHHHHHHHhHhhhcceEEEEEecCCCCC------c------c--c--e-----eeecChhHHHHHHHH
Q psy9208 302 GILWTAEEQGYVGAIAYVKKHQEELKNITVAMESDDGTFT------P------F--G--L-----SLKGSPEAACILNKV 360 (446)
Q Consensus 302 f~~~~aEE~Gl~GS~~y~~~~~~~~~~i~~~in~D~g~~~------~------~--~--~-----~~~gs~~l~~l~~~~ 360 (446)
|+|..-||.|+.|++.-+.....+ + .|-+|+.... . . | + ....++.+.+.+.++
T Consensus 199 ~v~TvQEEvGlrGA~~aa~~i~PD---i--aIavDvt~~~d~p~~~~~~~~~~lG~Gp~i~~~D~~~i~~~~l~~~l~~~ 273 (356)
T PRK09864 199 GVGSVEEEVGLRGAQTSAEHIKPD---V--VIVLDTAVAGDVPGIDNIKYPLKLGQGPGLMLFDKRYFPNQKLVAALKSC 273 (356)
T ss_pred EEEEcchhcchHHHHHHHhcCCCC---E--EEEEecccCCCCCCCcccccccccCCCCeEEEccCCccCCHHHHHHHHHH
Confidence 888899999999999877765432 3 4555542110 0 0 1 2 223345566666666
Q ss_pred HHHhCCCCCccccC--CCCCCCCchHhHH--hCCCeEEEeeeCCCCCCCCCcCCCCCcCCCCHHHHHHHHHHHHHHHHHH
Q psy9208 361 LRLFKPINATRLVQ--SKYPVGSDIELFQ--EKNIPGVALLNDNAKYFWYHHTRADTMSVLDSDTLDLCTALWGGVAYIL 436 (446)
Q Consensus 361 ~~~~~~~~~~~~~~--~~~~~gSD~~~F~--~~GIP~~~l~~~~~~y~~~yHt~~Dt~d~ld~~~l~~~~~~~a~~~~~l 436 (446)
++ ..++++... +. .|+|-..+. ..|||++.+.-.. .|-||+ .+-+|.+.++...+++..++-.+
T Consensus 274 A~---~~~Ip~Q~~~~~~--ggTDa~~i~~~~~Gvpt~~isiP~----RY~Hs~---~e~~~~~D~e~~~~Ll~~~~~~l 341 (356)
T PRK09864 274 AA---HNDLPLQFSTMKT--GATDGGRYNVMGGGRPVVALCLPT----RYLHAN---SGMISKADYDALLTLIRDFLTTL 341 (356)
T ss_pred HH---HcCCCceEEEcCC--CCchHHHHHHhCCCCcEEEEeecc----CcCCCc---ceEeEHHHHHHHHHHHHHHHHhc
Confidence 65 456765432 32 468877765 5799999987643 345997 56677888888888888877655
No 68
>PRK07522 acetylornithine deacetylase; Provisional
Probab=96.26 E-value=0.016 Score=59.24 Aligned_cols=89 Identities=19% Similarity=0.155 Sum_probs=62.2
Q ss_pred HHHHHHHHHHhCCCCceEEEEEEEeEEeCCceeceEEEEEcCcCCCCcEEEEEecCCCCCC-------------------
Q psy9208 227 EYAEMLYRMYRRGDGPVVVSINIDARNVGTTNTRNTIVQIRGRECPDKVVITSGHLDSWDV------------------- 287 (446)
Q Consensus 227 ~~~~~L~~~l~~g~~pv~v~l~~~~~~~~~~~s~NVia~i~G~~~~~~~Vvl~aH~Ds~~~------------------- 287 (446)
+.++.|.+++++-. +.+...- .......||++++++. +.+.|++.+|+|.++.
T Consensus 26 ~~~~~l~~~l~~~G--~~~~~~~----~~~~~~~nv~a~~~~~--~~~~ill~~H~Dtv~~~~~~W~~~pf~~~~~~g~i 97 (385)
T PRK07522 26 ALIEWVRDYLAAHG--VESELIP----DPEGDKANLFATIGPA--DRGGIVLSGHTDVVPVDGQAWTSDPFRLTERDGRL 97 (385)
T ss_pred HHHHHHHHHHHHcC--CeEEEEe----cCCCCcccEEEEeCCC--CCCeEEEEeecccccCCCCCCCCCCCceEEECCEE
Confidence 55677777775421 3322211 1112357999999764 3468999999998653
Q ss_pred -CCCcccCCCceeeE-----------------EEeeCccccccccHHHHHHHhH
Q psy9208 288 -GQGAMDDGGGAFIS-----------------GILWTAEEQGYVGAIAYVKKHQ 323 (446)
Q Consensus 288 -g~Ga~DngsG~a~l-----------------f~~~~aEE~Gl~GS~~y~~~~~ 323 (446)
|.|+.|+-+|++++ |+|...||.|..|++++++...
T Consensus 98 ~GrG~~D~Kg~~a~~l~a~~~l~~~~~~~~i~~~~~~dEE~g~~G~~~l~~~~~ 151 (385)
T PRK07522 98 YGRGTCDMKGFIAAALAAVPELAAAPLRRPLHLAFSYDEEVGCLGVPSMIARLP 151 (385)
T ss_pred EeccccccchHHHHHHHHHHHHHhCCCCCCEEEEEEeccccCCccHHHHHHHhh
Confidence 47888888888766 8888999998889999998643
No 69
>PRK07907 hypothetical protein; Provisional
Probab=96.22 E-value=0.0074 Score=63.25 Aligned_cols=64 Identities=23% Similarity=0.218 Sum_probs=53.1
Q ss_pred eceEEEEEcCcCCCCcEEEEEecCCCCCC---------------------CCCcccCCCceeeE----------------
Q psy9208 259 TRNTIVQIRGRECPDKVVITSGHLDSWDV---------------------GQGAMDDGGGAFIS---------------- 301 (446)
Q Consensus 259 s~NVia~i~G~~~~~~~Vvl~aH~Ds~~~---------------------g~Ga~DngsG~a~l---------------- 301 (446)
..||++.++|+ .+.+.|++.+|+|.++. |.|+.|+-+|++++
T Consensus 70 ~~nl~a~~~~~-~~~~~lll~gH~DvVp~~~~~~W~~~Pf~~~~~~g~lyGrG~~D~Kg~~aa~l~a~~~l~~~~~~~i~ 148 (449)
T PRK07907 70 APAVIGTRPAP-PGAPTVLLYAHHDVQPPGDPDAWDSPPFELTERDGRLYGRGAADDKGGIAMHLAALRALGGDLPVGVT 148 (449)
T ss_pred CCEEEEEecCC-CCCCEEEEEcccCCCCCCCccccCCCCceeEEECCEEEECCccCCcHHHHHHHHHHHHhccCCCCcEE
Confidence 46999999875 44678999999999874 36999999998766
Q ss_pred EEeeCccccccccHHHHHHHhH
Q psy9208 302 GILWTAEEQGYVGAIAYVKKHQ 323 (446)
Q Consensus 302 f~~~~aEE~Gl~GS~~y~~~~~ 323 (446)
|++.+.||.|..|+++|+++..
T Consensus 149 ~~~~~dEE~g~~g~~~~l~~~~ 170 (449)
T PRK07907 149 VFVEGEEEMGSPSLERLLAEHP 170 (449)
T ss_pred EEEEcCcccCCccHHHHHHhch
Confidence 7777889999899999998754
No 70
>PRK07473 carboxypeptidase; Provisional
Probab=96.09 E-value=0.0067 Score=62.09 Aligned_cols=63 Identities=17% Similarity=0.322 Sum_probs=51.8
Q ss_pred ceEEEEEcCcCCCCcEEEEEecCCCCCC-----------------CCCcccCCCceeeE-------------------EE
Q psy9208 260 RNTIVQIRGRECPDKVVITSGHLDSWDV-----------------GQGAMDDGGGAFIS-------------------GI 303 (446)
Q Consensus 260 ~NVia~i~G~~~~~~~Vvl~aH~Ds~~~-----------------g~Ga~DngsG~a~l-------------------f~ 303 (446)
.||++.++|.....+.|++.+|+|.++. |.|+.|+-+|++++ |+
T Consensus 62 ~~~~~~~~~~~~~~~~lll~gH~DtV~~~~~~~~~p~~~~~g~lyGrG~~D~Kgglaa~l~A~~~l~~~~~~~~~~v~~~ 141 (376)
T PRK07473 62 DCVRARFPHPRQGEPGILIAGHMDTVHPVGTLEKLPWRREGNKCYGPGILDMKGGNYLALEAIRQLARAGITTPLPITVL 141 (376)
T ss_pred CeEEEEeCCCCCCCCeEEEEecCCCCCCCCCccCCCeEEECCEEEcCchhhchHHHHHHHHHHHHHHHcCCCCCCCEEEE
Confidence 5899999864223467999999998731 58999999998776 88
Q ss_pred eeCccccccccHHHHHHHh
Q psy9208 304 LWTAEEQGYVGAIAYVKKH 322 (446)
Q Consensus 304 ~~~aEE~Gl~GS~~y~~~~ 322 (446)
+...||.|..|+++++++.
T Consensus 142 ~~~dEE~g~~g~~~~~~~~ 160 (376)
T PRK07473 142 FTPDEEVGTPSTRDLIEAE 160 (376)
T ss_pred EeCCcccCCccHHHHHHHh
Confidence 8999999999999999865
No 71
>PRK08588 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=96.02 E-value=0.0063 Score=62.05 Aligned_cols=60 Identities=30% Similarity=0.356 Sum_probs=49.2
Q ss_pred eceEEEEEcCcCCCCcEEEEEecCCCCCC---------------------CCCcccCCCceeeE----------------
Q psy9208 259 TRNTIVQIRGRECPDKVVITSGHLDSWDV---------------------GQGAMDDGGGAFIS---------------- 301 (446)
Q Consensus 259 s~NVia~i~G~~~~~~~Vvl~aH~Ds~~~---------------------g~Ga~DngsG~a~l---------------- 301 (446)
..|+++++. + .+ +.|++.+|+|.++. |.|+.|+-+|++++
T Consensus 48 ~~~l~a~~g-~-~~-~~il~~~H~DtVp~~~~~~w~~~Pf~~~~~~g~l~GrG~~D~Kgg~aa~l~a~~~l~~~~~~~~~ 124 (377)
T PRK08588 48 RANLVAEIG-S-GS-PVLALSGHMDVVAAGDVDKWTYDPFELTEKDGKLYGRGATDMKSGLAALVIAMIELKEQGQLLNG 124 (377)
T ss_pred CceEEEEeC-C-CC-ceEEEEeeecccCCCCcccCcCCCCCeEEECCEEEecCcccccchHHHHHHHHHHHHHcCCCCCC
Confidence 469999984 3 23 68999999999885 35777888887664
Q ss_pred ---EEeeCccccccccHHHHHHH
Q psy9208 302 ---GILWTAEEQGYVGAIAYVKK 321 (446)
Q Consensus 302 ---f~~~~aEE~Gl~GS~~y~~~ 321 (446)
|++..+||.|..|+++++++
T Consensus 125 ~i~l~~~~dEE~g~~G~~~~~~~ 147 (377)
T PRK08588 125 TIRLLATAGEEVGELGAKQLTEK 147 (377)
T ss_pred cEEEEEEcccccCchhHHHHHhc
Confidence 99999999998999999987
No 72
>PRK06915 acetylornithine deacetylase; Validated
Probab=95.96 E-value=0.0067 Score=62.93 Aligned_cols=62 Identities=27% Similarity=0.398 Sum_probs=49.9
Q ss_pred eceEEEEEcCcCCCCcEEEEEecCCCCCC---------------------CCCcccCCCceeeE----------------
Q psy9208 259 TRNTIVQIRGRECPDKVVITSGHLDSWDV---------------------GQGAMDDGGGAFIS---------------- 301 (446)
Q Consensus 259 s~NVia~i~G~~~~~~~Vvl~aH~Ds~~~---------------------g~Ga~DngsG~a~l---------------- 301 (446)
..||||+++|. .+.+.|++.+|+|.++. |.|+.|+-+|++++
T Consensus 80 ~~nlia~~~g~-~~~~~l~l~~H~Dtvp~~~~~~W~~~Pf~~~~~~g~lyGrG~~D~Kgg~aa~l~a~~~l~~~~~~~~~ 158 (422)
T PRK06915 80 SPNIVATLKGS-GGGKSMILNGHIDVVPEGDVNQWDHHPYSGEVIGGRIYGRGTTDMKGGNVALLLAMEALIESGIELKG 158 (422)
T ss_pred CceEEEEEcCC-CCCCeEEEEeeccccCCCCcccCcCCCCCceEECCEEEecCcccchHHHHHHHHHHHHHHHcCCCCCC
Confidence 48999999885 45678999999999874 36778888887655
Q ss_pred ---EEeeCccccccccHHHHHHH
Q psy9208 302 ---GILWTAEEQGYVGAIAYVKK 321 (446)
Q Consensus 302 ---f~~~~aEE~Gl~GS~~y~~~ 321 (446)
|++...||.|..|+.+.+..
T Consensus 159 ~v~~~~~~dEE~g~~G~~~~~~~ 181 (422)
T PRK06915 159 DVIFQSVIEEESGGAGTLAAILR 181 (422)
T ss_pred cEEEEEecccccCCcchHHHHhc
Confidence 78888999888898887764
No 73
>PRK08554 peptidase; Reviewed
Probab=95.93 E-value=0.011 Score=61.91 Aligned_cols=52 Identities=15% Similarity=0.187 Sum_probs=40.2
Q ss_pred CCCchHhHHhCCCeEEEeeeCCCCCCCCCcCCCCCcCCCCHHHHHHHHHHHHHHHHHHh
Q psy9208 379 VGSDIELFQEKNIPGVALLNDNAKYFWYHHTRADTMSVLDSDTLDLCTALWGGVAYILA 437 (446)
Q Consensus 379 ~gSD~~~F~~~GIP~~~l~~~~~~y~~~yHt~~Dt~d~ld~~~l~~~~~~~a~~~~~lA 437 (446)
.+||-..|..+|||++.+..++. .-|++ -+.++.+.|...++++..+++.|-
T Consensus 386 GgtDa~~~~~~Gip~v~~Gp~~~----~~H~~---~E~v~i~~l~~~~~i~~~~i~~l~ 437 (438)
T PRK08554 386 GASDSRYFTPYGVKAIDFGPKGG----NIHGP---NEYVEIDSLKKMPEVYKRIALRLL 437 (438)
T ss_pred CchHHHHHHhcCCCceEECCCCC----CCCCC---cceEEHHHHHHHHHHHHHHHHHHh
Confidence 34898777789999998655432 34874 478999999999999999887763
No 74
>PRK06446 hypothetical protein; Provisional
Probab=95.86 E-value=0.012 Score=61.45 Aligned_cols=63 Identities=21% Similarity=0.228 Sum_probs=52.4
Q ss_pred eceEEEEEcCcCCCCcEEEEEecCCCCCC---------------------CCCcccCCCceeeE----------------
Q psy9208 259 TRNTIVQIRGRECPDKVVITSGHLDSWDV---------------------GQGAMDDGGGAFIS---------------- 301 (446)
Q Consensus 259 s~NVia~i~G~~~~~~~Vvl~aH~Ds~~~---------------------g~Ga~DngsG~a~l---------------- 301 (446)
-.||+++++++ +.+.|++.+|+|.++. |.|+.|+-+|++++
T Consensus 50 ~~~lia~~~~~--~~~~vll~gH~DvVp~~~~~~W~~~Pf~~~~~dg~lyGRGa~DmKgglaa~l~A~~~l~~~~~~~~~ 127 (436)
T PRK06446 50 HPVVYGEINVG--AKKTLLIYNHYDVQPVDPLSEWKRDPFSATIENGRIYARGASDNKGTLMARLFAIKHLIDKHKLNVN 127 (436)
T ss_pred CCEEEEEecCC--CCCEEEEEecccCCCCCccccccCCCCceEEECCEEEEEeccCCcHHHHHHHHHHHHHHHcCCCCCC
Confidence 47999998643 3467999999999763 37899999998776
Q ss_pred --EEeeCccccccccHHHHHHHhH
Q psy9208 302 --GILWTAEEQGYVGAIAYVKKHQ 323 (446)
Q Consensus 302 --f~~~~aEE~Gl~GS~~y~~~~~ 323 (446)
|++.+.||.|..|+++|++++.
T Consensus 128 i~~~~~~dEE~g~~g~~~~l~~~~ 151 (436)
T PRK06446 128 VKFLYEGEEEIGSPNLEDFIEKNK 151 (436)
T ss_pred EEEEEEcccccCCHhHHHHHHHHH
Confidence 8899999999999999998865
No 75
>PRK13013 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=95.82 E-value=0.01 Score=61.64 Aligned_cols=61 Identities=31% Similarity=0.360 Sum_probs=47.9
Q ss_pred eceEEEEEcCcCCCCcEEEEEecCCCCCC-------------------CCCcccCCCceeeE------------------
Q psy9208 259 TRNTIVQIRGRECPDKVVITSGHLDSWDV-------------------GQGAMDDGGGAFIS------------------ 301 (446)
Q Consensus 259 s~NVia~i~G~~~~~~~Vvl~aH~Ds~~~-------------------g~Ga~DngsG~a~l------------------ 301 (446)
..|+||+++|+ .+++.|++.+|+|.++. |.|+.|+-+|++++
T Consensus 71 ~~nlia~~~g~-~~~~~i~l~gH~DvVp~~~~W~~~Pf~~~~~dg~iyGrGa~D~Kg~~aa~l~a~~~l~~~~~~~~~~v 149 (427)
T PRK13013 71 RWNLVARRQGA-RDGDCVHFNSHHDVVEVGHGWTRDPFGGEVKDGRIYGRGACDMKGGLAASIIAAEAFLAVYPDFAGSI 149 (427)
T ss_pred cceEEEEecCC-CCCCEEEEEeccccCCCCCCCcCCCCCceEECCEEEeccccccchHHHHHHHHHHHHHHhCCCCCccE
Confidence 36999999886 45678999999999764 36888988888766
Q ss_pred -EEeeCccccccccHHHHHH
Q psy9208 302 -GILWTAEEQGYVGAIAYVK 320 (446)
Q Consensus 302 -f~~~~aEE~Gl~GS~~y~~ 320 (446)
|++...||.|..|...|+.
T Consensus 150 ~~~~~~dEE~g~~~g~~~l~ 169 (427)
T PRK13013 150 EISGTADEESGGFGGVAYLA 169 (427)
T ss_pred EEEEEeccccCChhHHHHHH
Confidence 8888999988765555554
No 76
>PRK08201 hypothetical protein; Provisional
Probab=95.70 E-value=0.016 Score=60.93 Aligned_cols=64 Identities=23% Similarity=0.247 Sum_probs=52.1
Q ss_pred eceEEEEEcCcCCCCcEEEEEecCCCCCC---------------------CCCcccCCCceeeE----------------
Q psy9208 259 TRNTIVQIRGRECPDKVVITSGHLDSWDV---------------------GQGAMDDGGGAFIS---------------- 301 (446)
Q Consensus 259 s~NVia~i~G~~~~~~~Vvl~aH~Ds~~~---------------------g~Ga~DngsG~a~l---------------- 301 (446)
..||+++++|. .+.+.|++.+|+|.++. |.|+.|+-+|++++
T Consensus 66 ~~~l~a~~~~~-~~~~~lll~gH~DvVp~~~~~~W~~dPf~~~~~~g~lyGRG~~DmKgglaa~l~a~~~l~~~~~~~~~ 144 (456)
T PRK08201 66 HPIVYADWLHA-PGKPTVLIYGHYDVQPVDPLNLWETPPFEPTIRDGKLYARGASDDKGQVFMHLKAVEALLKVEGTLPV 144 (456)
T ss_pred CCEEEEEecCC-CCCCEEEEEeccCCcCCCchhcccCCCCceEeECCEEEEEecccCcHHHHHHHHHHHHHHHhcCCCCC
Confidence 36999998764 34568999999999653 37889998888755
Q ss_pred ---EEeeCccccccccHHHHHHHhH
Q psy9208 302 ---GILWTAEEQGYVGAIAYVKKHQ 323 (446)
Q Consensus 302 ---f~~~~aEE~Gl~GS~~y~~~~~ 323 (446)
|++...||.|..|+.+|++++.
T Consensus 145 ~i~~~~~~dEE~g~~g~~~~l~~~~ 169 (456)
T PRK08201 145 NVKFCIEGEEEIGSPNLDSFVEEEK 169 (456)
T ss_pred CEEEEEEcccccCCccHHHHHHhhH
Confidence 8888999999999999998754
No 77
>PRK06837 acetylornithine deacetylase; Provisional
Probab=95.60 E-value=0.012 Score=61.30 Aligned_cols=64 Identities=23% Similarity=0.239 Sum_probs=49.7
Q ss_pred eeceEEEEEcCcCCCCcEEEEEecCCCCCCC---------------------CCcccCCCceeeE---------------
Q psy9208 258 NTRNTIVQIRGRECPDKVVITSGHLDSWDVG---------------------QGAMDDGGGAFIS--------------- 301 (446)
Q Consensus 258 ~s~NVia~i~G~~~~~~~Vvl~aH~Ds~~~g---------------------~Ga~DngsG~a~l--------------- 301 (446)
...||+++++|.....+.|++.+|+|.++.+ .|+.|+-+|++++
T Consensus 82 ~~~nl~a~~~g~~~~~~~il~~gH~DvVp~~~~~~W~~~Pf~~~~~~g~lyGrG~~D~Kgg~~a~l~a~~~l~~~~~~~~ 161 (427)
T PRK06837 82 GAPNVVGTYRPAGKTGRSLILQGHIDVVPEGPLDLWSRPPFDPVIVDGWMYGRGAADMKAGLAAMLFALDALRAAGLAPA 161 (427)
T ss_pred CCceEEEEecCCCCCCCeEEEEeecccCCCCCccccccCCCCcEEECCEEEecCcccchHHHHHHHHHHHHHHHcCCCCC
Confidence 3589999998852235789999999999864 3888988888766
Q ss_pred ----EEeeCccccccccHHHHHHH
Q psy9208 302 ----GILWTAEEQGYVGAIAYVKK 321 (446)
Q Consensus 302 ----f~~~~aEE~Gl~GS~~y~~~ 321 (446)
|++...||.|..|+.+++..
T Consensus 162 ~~i~~~~~~dEE~~g~g~~~~~~~ 185 (427)
T PRK06837 162 ARVHFQSVIEEESTGNGALSTLQR 185 (427)
T ss_pred CcEEEEEEeccccCCHhHHHHHhc
Confidence 77878899877788776543
No 78
>PRK13007 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=95.50 E-value=0.015 Score=58.65 Aligned_cols=62 Identities=26% Similarity=0.355 Sum_probs=49.1
Q ss_pred ceEEEEEcCcCCCCcEEEEEecCCCCCC--------------CCCcccCCCceeeE---------------EEeeCcccc
Q psy9208 260 RNTIVQIRGRECPDKVVITSGHLDSWDV--------------GQGAMDDGGGAFIS---------------GILWTAEEQ 310 (446)
Q Consensus 260 ~NVia~i~G~~~~~~~Vvl~aH~Ds~~~--------------g~Ga~DngsG~a~l---------------f~~~~aEE~ 310 (446)
.|+++++.++ .+ +.|++.+|+|.++. |.|+.|+.+|++++ |++.+.||.
T Consensus 50 ~~~~~~~~~~-~~-~~i~l~~H~Dtvp~~~~~~~~~~~g~i~GrG~~D~Kg~~a~~l~a~~~l~~~~~~i~~~~~~~EE~ 127 (352)
T PRK13007 50 NSVVARTDLG-RP-SRVVLAGHLDTVPVADNLPSRREGDRLYGCGASDMKSGLAVMLHLAATLAEPAHDLTLVFYDCEEV 127 (352)
T ss_pred CeEEEEccCC-CC-CeEEEEccccccCCCCCCCcceeCCEEEccCcccccHHHHHHHHHHHHhhccCCCeEEEEEecccc
Confidence 4899998543 23 36999999999884 48999999999866 888899998
Q ss_pred cc--ccHHHHHHHhH
Q psy9208 311 GY--VGAIAYVKKHQ 323 (446)
Q Consensus 311 Gl--~GS~~y~~~~~ 323 (446)
|. .|+..++..+.
T Consensus 128 ~~~~~G~~~~~~~~~ 142 (352)
T PRK13007 128 EAEANGLGRLAREHP 142 (352)
T ss_pred cCCcccHHHHHHhcc
Confidence 64 58888887653
No 79
>PRK15026 aminoacyl-histidine dipeptidase; Provisional
Probab=95.37 E-value=0.039 Score=58.50 Aligned_cols=74 Identities=23% Similarity=0.302 Sum_probs=53.9
Q ss_pred ceEEEEEcCcC--CCCcEEEEEecCCCCCCC------------------------CCc---ccCCCceeeE---------
Q psy9208 260 RNTIVQIRGRE--CPDKVVITSGHLDSWDVG------------------------QGA---MDDGGGAFIS--------- 301 (446)
Q Consensus 260 ~NVia~i~G~~--~~~~~Vvl~aH~Ds~~~g------------------------~Ga---~DngsG~a~l--------- 301 (446)
.|+++..+++. ...+.|++.+|+|.++.+ .|. .|+++|++++
T Consensus 53 gnvi~~~~~~~g~~~~~~v~l~gH~DtV~~~~~~~~~~w~~~P~~~~i~~~~l~g~Gt~lgaD~k~gva~~l~~l~~~~~ 132 (485)
T PRK15026 53 GNILIRKPATAGMENRKPVVLQAHLDMVPQKNNDTVHDFTKDPIQPYIDGEWVKARGTTLGADNGIGMASALAVLADENV 132 (485)
T ss_pred CeEEEEEcCCCCCCCCCEEEEEeeecccCCCCCCccccCCCCCceEEEcCCEEEeCCccccCccHHHHHHHHHHHHhCCC
Confidence 59999886431 234679999999998642 455 3777777665
Q ss_pred ------EEeeCccccccccHHHHHHHhHhhhcceEEEEEecC
Q psy9208 302 ------GILWTAEEQGYVGAIAYVKKHQEELKNITVAMESDD 337 (446)
Q Consensus 302 ------f~~~~aEE~Gl~GS~~y~~~~~~~~~~i~~~in~D~ 337 (446)
|++...||.|+.|++++.... .+..++||+|.
T Consensus 133 ~~~~i~~l~t~dEE~G~~ga~~l~~~~----~~~~~~i~~e~ 170 (485)
T PRK15026 133 VHGPLEVLLTMTEEAGMDGAFGLQSNW----LQADILINTDS 170 (485)
T ss_pred CCCCEEEEEEcccccCcHhHHHhhhcc----CCcCEEEEeCC
Confidence 888899999999999985422 24566777775
No 80
>PRK13009 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=95.36 E-value=0.024 Score=57.67 Aligned_cols=50 Identities=16% Similarity=0.096 Sum_probs=38.0
Q ss_pred CCchHhHHhCCCeEEEeeeCCCCCCCCCcCCCCCcCCCCHHHHHHHHHHHHHHHHHH
Q psy9208 380 GSDIELFQEKNIPGVALLNDNAKYFWYHHTRADTMSVLDSDTLDLCTALWGGVAYIL 436 (446)
Q Consensus 380 gSD~~~F~~~GIP~~~l~~~~~~y~~~yHt~~Dt~d~ld~~~l~~~~~~~a~~~~~l 436 (446)
++|...|.+.|||++.+..+. ...|++. ++++.+.+...++++..+++.+
T Consensus 324 ~tda~~~~~~g~p~v~~Gp~~----~~~H~~~---E~i~~~~l~~~~~~~~~~~~~~ 373 (375)
T PRK13009 324 TSDARFIADYGAQVVEFGPVN----ATIHKVN---ECVSVADLEKLTRIYERILERL 373 (375)
T ss_pred CccHHHHHHcCCCeEEeccCc----ccCCCCC---CcEEHHHHHHHHHHHHHHHHHH
Confidence 377655667899999766543 2358863 8899999999999999888766
No 81
>PRK07079 hypothetical protein; Provisional
Probab=95.21 E-value=0.025 Score=59.63 Aligned_cols=64 Identities=23% Similarity=0.228 Sum_probs=52.0
Q ss_pred eceEEEEEcCcCCCCcEEEEEecCCCCCC----------------------CCCcccCCCceeeE---------------
Q psy9208 259 TRNTIVQIRGRECPDKVVITSGHLDSWDV----------------------GQGAMDDGGGAFIS--------------- 301 (446)
Q Consensus 259 s~NVia~i~G~~~~~~~Vvl~aH~Ds~~~----------------------g~Ga~DngsG~a~l--------------- 301 (446)
..||++.++|. .+.+.|++.+|+|.++. |.|+.|+-+|++++
T Consensus 72 ~~~vva~~~~~-~~~~~lll~gH~DvVp~~~~~W~~~~~Pf~~~~~dg~lyGRGa~DmKgg~aa~l~A~~~l~~~~~~~~ 150 (469)
T PRK07079 72 GPFLIAERIED-DALPTVLIYGHGDVVRGYDEQWREGLSPWTLTEEGDRWYGRGTADNKGQHTINLAALEQVLAARGGRL 150 (469)
T ss_pred CCEEEEEeCCC-CCCCEEEEEcccCCCCCChHHhcccCCCCcccccCCEEEEEeccCCcHHHHHHHHHHHHHHHhcCCCC
Confidence 47999998764 34568999999997652 37889998887644
Q ss_pred -----EEeeCccccccccHHHHHHHhH
Q psy9208 302 -----GILWTAEEQGYVGAIAYVKKHQ 323 (446)
Q Consensus 302 -----f~~~~aEE~Gl~GS~~y~~~~~ 323 (446)
|++...||.|..|++++++++.
T Consensus 151 ~~~i~~~~~~dEE~g~~G~~~l~~~~~ 177 (469)
T PRK07079 151 GFNVKLLIEMGEEIGSPGLAEVCRQHR 177 (469)
T ss_pred CCCEEEEEECccccCCccHHHHHHHhH
Confidence 8888999999999999999864
No 82
>TIGR01886 dipeptidase dipeptidase PepV. This model represents a small clade of dipeptidase enzymes which are members of the larger M25 subfamily of metalloproteases. Two characterized enzymes are included in the seed. One, from Lactococcus lactis has been shown to act on a wide range of dipeptides, but not larger peptides. The enzyme from Lactobacillus delbrueckii was originally characterized as a Xaa-His dipeptidase, specifically a carnosinase (beta-Ala-His) by complementation of an E. coli mutant. Further study, including the crystallization of the enzyme, has shown it to also be a non-specific dipeptidase. This group also includes enzymes from Streptococcus and Enterococcus.
Probab=95.15 E-value=0.015 Score=61.35 Aligned_cols=62 Identities=27% Similarity=0.344 Sum_probs=48.6
Q ss_pred eEEEEEcCcCCCCcEEEEEecCCCCCC-------------------CCCcccCCCceeeE-------------------E
Q psy9208 261 NTIVQIRGRECPDKVVITSGHLDSWDV-------------------GQGAMDDGGGAFIS-------------------G 302 (446)
Q Consensus 261 NVia~i~G~~~~~~~Vvl~aH~Ds~~~-------------------g~Ga~DngsG~a~l-------------------f 302 (446)
|+++.+.+. .+++.|++.+|+|.++. |.|+.|+-+|++++ |
T Consensus 67 ~~~~~~~~~-~~~~~l~~~gH~DvVp~~~~W~~~Pf~~~~~dg~lyGRG~~D~Kg~~~a~l~a~~~l~~~~~~~~~~i~~ 145 (466)
T TIGR01886 67 NYAGHVEYG-AGDERLGIIGHMDVVPAGEGWTRDPFEPEIDEGRIYARGASDDKGPSLAAYYAMKILKELGLPPSKKIRF 145 (466)
T ss_pred CCceeEEec-CCCCEEEEEeecccCCCCCCCcCCCCCeEEECCEEEecCccccchHHHHHHHHHHHHHHhCCCCCCCEEE
Confidence 444444443 34568999999999864 47999999988665 8
Q ss_pred EeeCccccccccHHHHHHHhH
Q psy9208 303 ILWTAEEQGYVGAIAYVKKHQ 323 (446)
Q Consensus 303 ~~~~aEE~Gl~GS~~y~~~~~ 323 (446)
++.+.||.|..|+++|++++.
T Consensus 146 ~~~~dEE~g~~g~~~~~~~~~ 166 (466)
T TIGR01886 146 VVGTNEETGWVDMDYYFKHEE 166 (466)
T ss_pred EEECccccCcccHHHHHhcCc
Confidence 888999999999999998764
No 83
>TIGR01880 Ac-peptdase-euk N-acyl-L-amino-acid amidohydrolase. This model represents a family of eukaryotic N-acyl-L-amino-acid amidohydrolases active on fatty acid and acetyl amides of L-amino acids.
Probab=95.14 E-value=0.032 Score=57.47 Aligned_cols=55 Identities=13% Similarity=0.163 Sum_probs=39.7
Q ss_pred CCchHhHHhCCCeEEEeeeCCCCCCCCCcCCCCCcCCCCHHHHHHHHHHHHHHHHHHhc
Q psy9208 380 GSDIELFQEKNIPGVALLNDNAKYFWYHHTRADTMSVLDSDTLDLCTALWGGVAYILAD 438 (446)
Q Consensus 380 gSD~~~F~~~GIP~~~l~~~~~~y~~~yHt~~Dt~d~ld~~~l~~~~~~~a~~~~~lA~ 438 (446)
++|..-|...|||++.+..+... ....|++ =++++.+.+.+.++++..++++++.
T Consensus 345 ~tDa~~~~~~gip~v~fgp~~~~-~~~aH~~---dE~i~i~~l~~~~~~~~~~l~~~~~ 399 (400)
T TIGR01880 345 STDSRYIRAAGVPALGFSPMNNT-PVLLHDH---NEFLNEAVFLRGIEIYQTLISALAS 399 (400)
T ss_pred cchHHHHHhCCCCeEEECCccCC-cccccCC---CCceEHHHHHHHHHHHHHHHHHhhc
Confidence 37766666789999765443211 1235875 3579999999999999999998864
No 84
>PRK07318 dipeptidase PepV; Reviewed
Probab=95.08 E-value=0.016 Score=61.06 Aligned_cols=61 Identities=28% Similarity=0.291 Sum_probs=48.6
Q ss_pred eEEEEEcCcCCCCcEEEEEecCCCCCC-------------------CCCcccCCCceeeE-------------------E
Q psy9208 261 NTIVQIRGRECPDKVVITSGHLDSWDV-------------------GQGAMDDGGGAFIS-------------------G 302 (446)
Q Consensus 261 NVia~i~G~~~~~~~Vvl~aH~Ds~~~-------------------g~Ga~DngsG~a~l-------------------f 302 (446)
|+++.++.. .+.+.|++.+|+|.++. |.|+.|+-+|++++ |
T Consensus 68 n~~~~~~~~-~~~~~l~l~gH~DvVp~~~~W~~~Pf~~~~~dg~lyGRG~~DmKgg~aa~l~Al~~l~~~g~~~~~~i~l 146 (466)
T PRK07318 68 NYAGHIEYG-EGEEVLGILGHLDVVPAGDGWDTDPYEPVIKDGKIYARGTSDDKGPTMAAYYALKIIKELGLPLSKKVRF 146 (466)
T ss_pred CccceEEEC-CCCCEEEEEEecCCCCCCCCCCCCCcceEEECCEEEEcccccCcHHHHHHHHHHHHHHHcCCCCCccEEE
Confidence 677766533 23457999999999874 37888988888766 8
Q ss_pred EeeCccccccccHHHHHHHh
Q psy9208 303 ILWTAEEQGYVGAIAYVKKH 322 (446)
Q Consensus 303 ~~~~aEE~Gl~GS~~y~~~~ 322 (446)
++.+.||.|..|++++++++
T Consensus 147 ~~~~DEE~g~~G~~~l~~~~ 166 (466)
T PRK07318 147 IVGTDEESGWKCMDYYFEHE 166 (466)
T ss_pred EEEcccccCchhHHHHHHhC
Confidence 88899999999999999875
No 85
>PRK05469 peptidase T; Provisional
Probab=95.06 E-value=0.023 Score=58.73 Aligned_cols=54 Identities=11% Similarity=0.197 Sum_probs=42.2
Q ss_pred CCCchHhHHhCCCeEEEeeeCCCCCCCCCcCCCCCcCCCCHHHHHHHHHHHHHHHHHHhcC
Q psy9208 379 VGSDIELFQEKNIPGVALLNDNAKYFWYHHTRADTMSVLDSDTLDLCTALWGGVAYILADL 439 (446)
Q Consensus 379 ~gSD~~~F~~~GIP~~~l~~~~~~y~~~yHt~~Dt~d~ld~~~l~~~~~~~a~~~~~lA~~ 439 (446)
.++|...|...|||++.+..++. ..|++ -+.++.+.+...++++..++..++..
T Consensus 354 ggtD~~~~~~~giP~v~~gpG~~----~~H~~---~E~v~i~~l~~~~~~~~~~~~~~~~~ 407 (408)
T PRK05469 354 GGTDGSQLSFMGLPCPNIFTGGH----NFHGK---FEFVSLESMEKAVEVIVEIAELTAER 407 (408)
T ss_pred CcccHHHHhhCCCceEEECcCcc----cCcCc---ceeeEHHHHHHHHHHHHHHHHHHhcC
Confidence 35888877778999998776542 25874 36789999999999999998887754
No 86
>PRK05111 acetylornithine deacetylase; Provisional
Probab=94.91 E-value=0.064 Score=54.76 Aligned_cols=89 Identities=21% Similarity=0.238 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHhCCCCceEEEEEEEeEEeCCceeceEEEEEcCcCCCCcEEEEEecCCCCCC------------------
Q psy9208 226 PEYAEMLYRMYRRGDGPVVVSINIDARNVGTTNTRNTIVQIRGRECPDKVVITSGHLDSWDV------------------ 287 (446)
Q Consensus 226 ~~~~~~L~~~l~~g~~pv~v~l~~~~~~~~~~~s~NVia~i~G~~~~~~~Vvl~aH~Ds~~~------------------ 287 (446)
.+.++.|.+.++.-. +.+.+. .. .....-.||||++ |+ .+ +-|++.+|+|.++.
T Consensus 32 ~~~~~~l~~~l~~~g--~~~~~~--~~-~~~~~~~nvia~~-g~-~~-~~il~~~H~Dvvp~~~~~W~~~Pf~~~~~~g~ 103 (383)
T PRK05111 32 RAVIDLLAGWFEDLG--FNVEIQ--PV-PGTRGKFNLLASL-GS-GE-GGLLLAGHTDTVPFDEGRWTRDPFTLTEHDGK 103 (383)
T ss_pred HHHHHHHHHHHHHCC--CeEEEE--ec-CCCCCCceEEEEe-CC-CC-CeEEEEeeeceecCCCCcCcCCCCccEEECCE
Confidence 346777777776421 332221 11 0112346999998 43 23 35999999999863
Q ss_pred --CCCcccCCCceeeE-----------------EEeeCccccccccHHHHHHHh
Q psy9208 288 --GQGAMDDGGGAFIS-----------------GILWTAEEQGYVGAIAYVKKH 322 (446)
Q Consensus 288 --g~Ga~DngsG~a~l-----------------f~~~~aEE~Gl~GS~~y~~~~ 322 (446)
|.|+.|+=++++++ |++...||.|..|+++++++.
T Consensus 104 i~GrG~~D~Kg~~a~~l~a~~~l~~~~~~~~i~~~~~~~EE~g~~G~~~~~~~~ 157 (383)
T PRK05111 104 LYGLGTADMKGFFAFILEALRDIDLTKLKKPLYILATADEETSMAGARAFAEAT 157 (383)
T ss_pred EEecccccccHHHHHHHHHHHHHhhcCCCCCeEEEEEeccccCcccHHHHHhcC
Confidence 36777777777655 888999999988999999864
No 87
>TIGR01882 peptidase-T peptidase T. This model represents a tripeptide aminopeptidase known as Peptidase T, which has a substrate preference for hydrophobic peptides.
Probab=94.84 E-value=0.12 Score=53.45 Aligned_cols=51 Identities=14% Similarity=0.197 Sum_probs=40.1
Q ss_pred CCchHhHHhCCCeEEEeeeCCCCCCCCCcCCCCCcCCCCHHHHHHHHHHHHHHHHHHh
Q psy9208 380 GSDIELFQEKNIPGVALLNDNAKYFWYHHTRADTMSVLDSDTLDLCTALWGGVAYILA 437 (446)
Q Consensus 380 gSD~~~F~~~GIP~~~l~~~~~~y~~~yHt~~Dt~d~ld~~~l~~~~~~~a~~~~~lA 437 (446)
++|...|...|||++.+..+.. ..||+ -++++.+.|...++++..++-..|
T Consensus 357 gtDa~~~~~~Gip~~~~G~G~~----~aHt~---dE~v~i~~l~~~~~~~~~li~~~~ 407 (410)
T TIGR01882 357 GTDGSQLSYMGLPTPNIFAGGE----NMHGR---FEYISVDNMVKAVDVIVEIAKLNE 407 (410)
T ss_pred echHHHHHhCCCCCCeEcCCcc----cCcCC---ceEEEHHHHHHHHHHHHHHHHHHh
Confidence 5898878889999998877542 24885 477999999999998888876555
No 88
>COG0624 ArgE Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases [Amino acid transport and metabolism]
Probab=94.76 E-value=0.041 Score=56.79 Aligned_cols=65 Identities=29% Similarity=0.445 Sum_probs=53.6
Q ss_pred eceEEEEEcCcCCCCcEEEEEecCCCCCCC---------------------CCcccCCCceeeE----------------
Q psy9208 259 TRNTIVQIRGRECPDKVVITSGHLDSWDVG---------------------QGAMDDGGGAFIS---------------- 301 (446)
Q Consensus 259 s~NVia~i~G~~~~~~~Vvl~aH~Ds~~~g---------------------~Ga~DngsG~a~l---------------- 301 (446)
..|+++.+.+. ++++.|++.+|+|.++.| .|+.|+-++++++
T Consensus 62 ~~n~~~~~~~~-~~~~~l~l~~H~DvVP~g~~~~W~~~Pf~~~~~dg~lyGRG~~D~KG~~~a~l~A~~~l~~~~~~~~~ 140 (409)
T COG0624 62 RPNLVARLGGG-DGGPTLLLGGHLDVVPAGGGEDWTTDPFEPTIKDGKLYGRGAADMKGGLAAALYALSALKAAGGELPG 140 (409)
T ss_pred ceEEEEEecCC-CCCCeEEEeccccccCCCCcccCccCCCccEEECCEEEecCccccchHHHHHHHHHHHHHHhCCCCCe
Confidence 56999999987 555899999999999864 5677777777655
Q ss_pred ---EEeeCccccccccHHHHHHHhHh
Q psy9208 302 ---GILWTAEEQGYVGAIAYVKKHQE 324 (446)
Q Consensus 302 ---f~~~~aEE~Gl~GS~~y~~~~~~ 324 (446)
|++.+.||.|-.|..+|+.++..
T Consensus 141 ~v~~~~~~dEE~g~~~~~~~~~~~~~ 166 (409)
T COG0624 141 DVRLLFTADEESGGAGGKAYLEEGEE 166 (409)
T ss_pred EEEEEEEeccccCCcchHHHHHhcch
Confidence 88889999999999999998753
No 89
>TIGR01902 dapE-lys-deAc N-acetyl-ornithine/N-acetyl-lysine deacetylase. This clade of mainly archaeal and related bacterial species contains two characterized enzymes, an deacetylase with specificity for both N-acetyl-ornithine and N-acetyl-lysine from Thermus which is found within a lysine biosynthesis operon, and a fusion protein with acetyl-glutamate kinase (an enzyme of ornithine biosynthesis) from Lactobacillus. It is possible that all of the sequences within this clade have dual specificity, or that a mix of specificities have evolved within this clade.
Probab=94.57 E-value=0.036 Score=55.65 Aligned_cols=61 Identities=28% Similarity=0.340 Sum_probs=49.7
Q ss_pred ceEEEEEcCcCCCCcEEEEEecCCCCC------------CCCCcccCCCceeeE---------------EEeeCcccccc
Q psy9208 260 RNTIVQIRGRECPDKVVITSGHLDSWD------------VGQGAMDDGGGAFIS---------------GILWTAEEQGY 312 (446)
Q Consensus 260 ~NVia~i~G~~~~~~~Vvl~aH~Ds~~------------~g~Ga~DngsG~a~l---------------f~~~~aEE~Gl 312 (446)
.|+++.. |+ ..+.|++.+|+|.++ .|.|+.|+-+|++++ |++...||.|.
T Consensus 40 ~~~~~~~-~~--~~~~i~~~~H~D~vp~~~~~~~~~g~i~GrG~~D~Kg~~aa~l~a~~~l~~~~~~i~~~~~~dEE~g~ 116 (336)
T TIGR01902 40 GNFILGK-GD--GHKKILLAGHVDTVPGYIPVKIEGGLLYGRGAVDAKGPLIAMIFATWLLNEKGIKVIVSGLVDEESSS 116 (336)
T ss_pred CcEEEEe-CC--CCceEEEEccccccCCCcccEEeCCEEEEecccCCCcHHHHHHHHHHHHHhCCCcEEEEEEeCcccCC
Confidence 4888865 32 346899999999985 258999999999876 77888999999
Q ss_pred ccHHHHHHHhH
Q psy9208 313 VGAIAYVKKHQ 323 (446)
Q Consensus 313 ~GS~~y~~~~~ 323 (446)
.|++++++++.
T Consensus 117 ~G~~~~~~~~~ 127 (336)
T TIGR01902 117 KGAREVIDKNY 127 (336)
T ss_pred ccHHHHHhhcC
Confidence 99999998754
No 90
>PRK00466 acetyl-lysine deacetylase; Validated
Probab=94.36 E-value=0.025 Score=57.11 Aligned_cols=48 Identities=27% Similarity=0.307 Sum_probs=42.1
Q ss_pred EEEEEecCCCCCC------------CCCcccCCCceeeE---------------EEeeCccccccccHHHHHHHh
Q psy9208 275 VVITSGHLDSWDV------------GQGAMDDGGGAFIS---------------GILWTAEEQGYVGAIAYVKKH 322 (446)
Q Consensus 275 ~Vvl~aH~Ds~~~------------g~Ga~DngsG~a~l---------------f~~~~aEE~Gl~GS~~y~~~~ 322 (446)
-|++.+|+|+++. |.|+.|+-+|++++ |++...||.|..|+++++++.
T Consensus 62 ~lll~gH~DtVp~~~~~~~~~g~iyGrG~~DmKgg~aa~l~a~~~l~~~~~~i~~~~~~dEE~g~~G~~~l~~~~ 136 (346)
T PRK00466 62 DILLASHVDTVPGYIEPKIEGEVIYGRGAVDAKGPLISMIIAAWLLNEKGIKVMVSGLADEESTSIGAKELVSKG 136 (346)
T ss_pred eEEEEeccccCCCCCCceeeCCEEEecCccccchHHHHHHHHHHHHHHcCCCEEEEEEcCcccCCccHHHHHhcC
Confidence 4999999999974 48999999997766 999999999988999999864
No 91
>PRK08652 acetylornithine deacetylase; Provisional
Probab=94.33 E-value=0.07 Score=53.52 Aligned_cols=83 Identities=24% Similarity=0.301 Sum_probs=58.7
Q ss_pred HHHHHHHHHHhCCCCceEEEEEEEeEEeCCceeceEEEEEcCcCCCCcEEEEEecCCCCCC------------CCCcccC
Q psy9208 227 EYAEMLYRMYRRGDGPVVVSINIDARNVGTTNTRNTIVQIRGRECPDKVVITSGHLDSWDV------------GQGAMDD 294 (446)
Q Consensus 227 ~~~~~L~~~l~~g~~pv~v~l~~~~~~~~~~~s~NVia~i~G~~~~~~~Vvl~aH~Ds~~~------------g~Ga~Dn 294 (446)
+.++.|.+.++.-. +.+++. . .. ...|+++ +. .+.|++.+|+|.++. |.|+.|+
T Consensus 23 ~~~~~l~~~l~~~G--~~v~~~--~--~~--~~~~~~~---~~---~~~i~l~~H~D~vp~~~~~~~~~g~iyGrG~~D~ 88 (347)
T PRK08652 23 EIALHIMEFLESLG--YDVHIE--S--DG--EVINIVV---NS---KAELFVEVHYDTVPVRAEFFVDGVYVYGTGACDA 88 (347)
T ss_pred HHHHHHHHHHHHcC--CEEEEE--e--cC--ceeEEEc---CC---CCEEEEEccccccCCCCCCEEECCEEEeccchhh
Confidence 44666777775421 433321 1 11 2457776 32 247999999999874 5799999
Q ss_pred CCceeeE-----------------EEeeCccccccccHHHHHHHhH
Q psy9208 295 GGGAFIS-----------------GILWTAEEQGYVGAIAYVKKHQ 323 (446)
Q Consensus 295 gsG~a~l-----------------f~~~~aEE~Gl~GS~~y~~~~~ 323 (446)
-+|++++ |++...||.|..|++++++++.
T Consensus 89 Kg~~a~~l~a~~~l~~~~~~~~v~~~~~~dEE~g~~G~~~~~~~~~ 134 (347)
T PRK08652 89 KGGVAAILLALEELGKEFEDLNVGIAFVSDEEEGGRGSALFAERYR 134 (347)
T ss_pred hHHHHHHHHHHHHHhhcccCCCEEEEEecCcccCChhHHHHHHhcC
Confidence 9999876 8888999998889999998764
No 92
>PRK08651 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=94.21 E-value=0.044 Score=56.15 Aligned_cols=54 Identities=20% Similarity=0.270 Sum_probs=42.0
Q ss_pred CCchHhHHhCCCeEEEeeeCCCCCCCCCcCCCCCcCCCCHHHHHHHHHHHHHHHHHHhcC
Q psy9208 380 GSDIELFQEKNIPGVALLNDNAKYFWYHHTRADTMSVLDSDTLDLCTALWGGVAYILADL 439 (446)
Q Consensus 380 gSD~~~F~~~GIP~~~l~~~~~~y~~~yHt~~Dt~d~ld~~~l~~~~~~~a~~~~~lA~~ 439 (446)
++|..-|...|||++.+..+.. ...|++. ++++.+.+...++++..++..|++.
T Consensus 340 ~tD~~~~~~~gip~v~~Gpg~~---~~~H~~~---E~i~~~~l~~~~~i~~~~i~~l~~~ 393 (394)
T PRK08651 340 GTDARFFGAKGIPTVVYGPGEL---ELAHAPD---EYVEVKDVEKAAKVYEEVLKRLAKG 393 (394)
T ss_pred cccHHHHhhCCCcEEEECCCCh---HhcCCCC---ceeEHHHHHHHHHHHHHHHHHhhcC
Confidence 4887777788999986644321 2457753 8899999999999999999999875
No 93
>COG4187 RocB Arginine degradation protein (predicted deacylase) [Amino acid transport and metabolism]
Probab=94.18 E-value=0.085 Score=53.94 Aligned_cols=79 Identities=24% Similarity=0.294 Sum_probs=64.4
Q ss_pred eeceEEEEEcCcCCCCcEEEEEecCCCCCC------------------------------------------CCCcccCC
Q psy9208 258 NTRNTIVQIRGRECPDKVVITSGHLDSWDV------------------------------------------GQGAMDDG 295 (446)
Q Consensus 258 ~s~NVia~i~G~~~~~~~Vvl~aH~Ds~~~------------------------------------------g~Ga~Dng 295 (446)
..+||.|-+||+ .+++.||+.+|+|.+.+ |-|+.|--
T Consensus 64 gR~nv~AlVrg~-~~k~tvvl~gH~DtV~iedYg~lKd~Afdp~~ll~~~i~~~e~~~erv~~Dl~SGDwlfGRGa~DMK 142 (553)
T COG4187 64 GRRNVFALVRGG-TSKRTVVLHGHFDTVSIEDYGELKDLAFDPLALLDALIESLELREERVLRDLESGDWLFGRGALDMK 142 (553)
T ss_pred ccceeEEEEecC-CCCceEEEeeccceeecccccchhhhccCHHHHHHHHHHhhccCHHHHhhhhhccCcccCCCchhhh
Confidence 678999999996 78899999999999653 57999999
Q ss_pred CceeeE------------------EEeeCccccccccHHHHHHHhHhhh----cceEEEEEecC
Q psy9208 296 GGAFIS------------------GILWTAEEQGYVGAIAYVKKHQEEL----KNITVAMESDD 337 (446)
Q Consensus 296 sG~a~l------------------f~~~~aEE~Gl~GS~~y~~~~~~~~----~~i~~~in~D~ 337 (446)
||.|+- |+...-||.--.|.+.-+..++.-. -.+.+.||+|.
T Consensus 143 sGlav~la~L~~fa~~~~~~GNlLf~a~pdEE~~s~G~r~a~~~L~~L~kk~~l~~~~~IN~D~ 206 (553)
T COG4187 143 SGLAVHLACLEEFAARTDRQGNLLFMAVPDEEVESRGMREARPALPGLKKKFDLEYTAAINLDV 206 (553)
T ss_pred hhhHHHHHHHHHHhhCCCCCCcEEEEeccchhhhcccHHHHHHHHHHHHHhhCceEEEEecccc
Confidence 998754 8999999988888888777765321 15778999996
No 94
>TIGR01891 amidohydrolases amidohydrolase. This model represents a subfamily of amidohydrolases which are a subset of those sequences detected by pfam01546. Included within this group are hydrolases of hippurate (N-benzylglycine), indoleacetic acid (IAA) N-conjugates of amino acids, N-acetyl-L-amino acids and aminobenzoylglutamate. These hydrolases are of the carboxypeptidase-type, most likely utilizing a zinc ion in the active site.
Probab=93.74 E-value=0.079 Score=53.78 Aligned_cols=62 Identities=24% Similarity=0.310 Sum_probs=41.9
Q ss_pred eceEEEEEcCcCCCCcEEEEEecCCCCCCCCC------cccCC--------CceeeE-------------------EEee
Q psy9208 259 TRNTIVQIRGRECPDKVVITSGHLDSWDVGQG------AMDDG--------GGAFIS-------------------GILW 305 (446)
Q Consensus 259 s~NVia~i~G~~~~~~~Vvl~aH~Ds~~~g~G------a~Dng--------sG~a~l-------------------f~~~ 305 (446)
..||++++++. .+.+.|++.+|+|.++.+.. ..+++ ++++++ |++.
T Consensus 43 ~~~vva~~~~~-~~~~~i~l~gH~DtVp~~~~~~~pf~~~~~g~l~g~G~~~~~a~~l~a~~~l~~~~~~~~~~i~~~~~ 121 (363)
T TIGR01891 43 ATGVVATIGGG-KPGPVVALRADMDALPIQEQTDLPYKSTNPGVMHACGHDLHTAILLGTAKLLKKLADLLEGTVRLIFQ 121 (363)
T ss_pred CcEEEEEEeCC-CCCCEEEEEeccCCCCcccccCCCcccCCCCceecCcCHHHHHHHHHHHHHHHhchhhCCceEEEEEe
Confidence 37999999874 35578999999999874210 00111 122222 8888
Q ss_pred CccccccccHHHHHHHh
Q psy9208 306 TAEEQGYVGAIAYVKKH 322 (446)
Q Consensus 306 ~aEE~Gl~GS~~y~~~~ 322 (446)
..||.| .|+++++++.
T Consensus 122 ~dEE~~-~G~~~~~~~~ 137 (363)
T TIGR01891 122 PAEEGG-GGATKMIEDG 137 (363)
T ss_pred ecCcCc-chHHHHHHCC
Confidence 899986 6999988764
No 95
>PRK06156 hypothetical protein; Provisional
Probab=93.74 E-value=0.078 Score=56.75 Aligned_cols=58 Identities=22% Similarity=0.283 Sum_probs=44.8
Q ss_pred EEEcCcCCCCcEEEEEecCCCCCC-------------------------CCCcccCCCceeeE-----------------
Q psy9208 264 VQIRGRECPDKVVITSGHLDSWDV-------------------------GQGAMDDGGGAFIS----------------- 301 (446)
Q Consensus 264 a~i~G~~~~~~~Vvl~aH~Ds~~~-------------------------g~Ga~DngsG~a~l----------------- 301 (446)
+.++|. ..+.|++.+|+|.++. |.|+.|+-+|++++
T Consensus 102 ~~~~g~--~~~~l~l~gH~DvVp~~~~~W~~~~~~~~Pf~~~~~~g~lyGRG~~D~Kgg~a~~l~a~~~l~~~~~~~~~~ 179 (520)
T PRK06156 102 IGLGGS--GSDKVGILTHADVVPANPELWVLDGTRLDPFKVTLVGDRLYGRGTEDDKGAIVTALYAMKAIKDSGLPLARR 179 (520)
T ss_pred EEecCC--CCCeEEEEEecCccCCCCccCccCCccCCCCceEEECCEEEEcCcccchHHHHHHHHHHHHHHHcCCCCCce
Confidence 666764 3357999999999864 25777777777655
Q ss_pred --EEeeCccccccccHHHHHHHhH
Q psy9208 302 --GILWTAEEQGYVGAIAYVKKHQ 323 (446)
Q Consensus 302 --f~~~~aEE~Gl~GS~~y~~~~~ 323 (446)
|++...||.|..|+++|++++.
T Consensus 180 i~~~~~~dEE~g~~G~~~~~~~~~ 203 (520)
T PRK06156 180 IELLVYTTEETDGDPLKYYLERYT 203 (520)
T ss_pred EEEEEecccccCchhHHHHHHhcC
Confidence 8888999999999999998753
No 96
>PRK04443 acetyl-lysine deacetylase; Provisional
Probab=93.73 E-value=0.064 Score=54.18 Aligned_cols=82 Identities=21% Similarity=0.182 Sum_probs=58.2
Q ss_pred HHHHHHHHHHhCCCCceEEEEEEEeEEeCCceeceEEEEEcCcCCCCcEEEEEecCCCCCC------------CCCcccC
Q psy9208 227 EYAEMLYRMYRRGDGPVVVSINIDARNVGTTNTRNTIVQIRGRECPDKVVITSGHLDSWDV------------GQGAMDD 294 (446)
Q Consensus 227 ~~~~~L~~~l~~g~~pv~v~l~~~~~~~~~~~s~NVia~i~G~~~~~~~Vvl~aH~Ds~~~------------g~Ga~Dn 294 (446)
+.++.|.+.++.-. ..+ ..+ ...|++|++.+ ..+.|++.+|+|.++. |.|+.|+
T Consensus 27 ~~~~~l~~~l~~~G--~~~--~~~-------~~~n~i~~~~~---~~~~l~~~~H~DtVp~~~p~~~~~g~iyGrG~~D~ 92 (348)
T PRK04443 27 AAAEFLVEFMESHG--REA--WVD-------EAGNARGPAGD---GPPLVLLLGHIDTVPGDIPVRVEDGVLWGRGSVDA 92 (348)
T ss_pred HHHHHHHHHHHHcC--CEE--EEc-------CCCcEEEEcCC---CCCEEEEEeeccccCCCCCcEeeCCeEEeeccccc
Confidence 45666667665421 332 211 12589999843 2368999999999963 5899999
Q ss_pred CCceeeE----------------EEeeCccccccccHHHHHHHh
Q psy9208 295 GGGAFIS----------------GILWTAEEQGYVGAIAYVKKH 322 (446)
Q Consensus 295 gsG~a~l----------------f~~~~aEE~Gl~GS~~y~~~~ 322 (446)
-+|++++ |++...||.|..|...++.+.
T Consensus 93 Kg~~aa~l~A~~~l~~~~~~~i~~~~~~dEE~g~~~~~~~l~~~ 136 (348)
T PRK04443 93 KGPLAAFAAAAARLEALVRARVSFVGAVEEEAPSSGGARLVADR 136 (348)
T ss_pred ccHHHHHHHHHHHhcccCCCCEEEEEEcccccCChhHHHHHHhc
Confidence 9988766 888899999888888777653
No 97
>KOG2275|consensus
Probab=93.13 E-value=0.14 Score=52.00 Aligned_cols=79 Identities=23% Similarity=0.312 Sum_probs=57.2
Q ss_pred eeceEEEEEcCcCCCCcEEEEEecCCCCCC---------------------CCCcccCC-CceeeE--------------
Q psy9208 258 NTRNTIVQIRGRECPDKVVITSGHLDSWDV---------------------GQGAMDDG-GGAFIS-------------- 301 (446)
Q Consensus 258 ~s~NVia~i~G~~~~~~~Vvl~aH~Ds~~~---------------------g~Ga~Dng-sG~a~l-------------- 301 (446)
..++++.+++|++..-.-|++.+|.|.+++ |.|++|.- +|++.+
T Consensus 73 ~~~~~l~T~~GS~P~L~silL~SH~DVVP~f~e~W~h~Pfsa~~~~~g~IyaRGaqD~K~~~va~leAir~L~~~g~kp~ 152 (420)
T KOG2275|consen 73 GKYVLLYTWLGSDPELPSILLNSHTDVVPVFREKWTHPPFSAFKDEDGNIYARGAQDMKCVGVAYLEAIRNLKASGFKPK 152 (420)
T ss_pred ceeEEEEEeeCCCCCccceeeeccccccCCCcccCccCCccccccCCCcEEeccccchHhHHHHHHHHHHHHHhcCCCcC
Confidence 389999999999434579999999999874 36777774 455444
Q ss_pred ---EEee-Cccccc-cccHHHHHHHhHhhhcceEEEEEecCC
Q psy9208 302 ---GILW-TAEEQG-YVGAIAYVKKHQEELKNITVAMESDDG 338 (446)
Q Consensus 302 ---f~~~-~aEE~G-l~GS~~y~~~~~~~~~~i~~~in~D~g 338 (446)
++.| ..||.| ..|.+.+++. ++.++...++-+|-|
T Consensus 153 Rti~lsfvpDEEi~G~~Gm~~fa~~--~~~~~l~~~filDEG 192 (420)
T KOG2275|consen 153 RTIHLSFVPDEEIGGHIGMKEFAKT--EEFKKLNLGFILDEG 192 (420)
T ss_pred ceEEEEecCchhccCcchHHHHhhh--hhhcccceeEEecCC
Confidence 5555 688886 8899999983 334455566667765
No 98
>TIGR01246 dapE_proteo succinyl-diaminopimelate desuccinylase, proteobacterial clade. This model describes a proteobacterial subset of succinyl-diaminopimelate desuccinylases. An experimentally confirmed Gram-positive lineage succinyl-diaminopimelate desuccinylase has been described for Corynebacterium glutamicum, and a neighbor-joining tree shows the seed members, SP:Q59284, and putative archaeal members such as TrEMBL:O58003 in a single clade. However, the archaeal members differ substantially, share a number of motifs with acetylornithine deacetylases rather than succinyl-diaminopimelate desuccinylases, and are not taken as trusted examples of succinyl-diaminopimelate desuccinylases. This model is limited to proteobacterial members for this reason.
Probab=92.96 E-value=0.15 Score=51.71 Aligned_cols=49 Identities=16% Similarity=0.072 Sum_probs=36.4
Q ss_pred CchHhHHhCCCeEEEeeeCCCCCCCCCcCCCCCcCCCCHHHHHHHHHHHHHHHHHH
Q psy9208 381 SDIELFQEKNIPGVALLNDNAKYFWYHHTRADTMSVLDSDTLDLCTALWGGVAYIL 436 (446)
Q Consensus 381 SD~~~F~~~GIP~~~l~~~~~~y~~~yHt~~Dt~d~ld~~~l~~~~~~~a~~~~~l 436 (446)
+|..-|...|||++.+..+.. ..|++ -++++.+.+.+.++++..++..|
T Consensus 322 ~d~~~~~~~g~p~~~~Gp~~~----~~H~~---~E~i~i~~l~~~~~~~~~~l~~~ 370 (370)
T TIGR01246 322 SDGRFIALMGAEVVEFGPVNA----TIHKV---NECVSIEDLEKLSDVYQDLLENL 370 (370)
T ss_pred chHHHHHHcCCCEEEecCCcc----cCCCC---CceeEHHHHHHHHHHHHHHHHhC
Confidence 787666678999987655432 34875 47889999999999888887654
No 99
>PRK13004 peptidase; Reviewed
Probab=92.93 E-value=0.11 Score=53.49 Aligned_cols=52 Identities=12% Similarity=0.107 Sum_probs=38.2
Q ss_pred CchHhHH-hCCCeEEEeeeCCCCCCCCCcCCCCCcCCCCHHHHHHHHHHHHHHHHHHhc
Q psy9208 381 SDIELFQ-EKNIPGVALLNDNAKYFWYHHTRADTMSVLDSDTLDLCTALWGGVAYILAD 438 (446)
Q Consensus 381 SD~~~F~-~~GIP~~~l~~~~~~y~~~yHt~~Dt~d~ld~~~l~~~~~~~a~~~~~lA~ 438 (446)
+|-..|. ..|||++.+..+.. ...|++. +.++.+.+.+.+++++.++..+.+
T Consensus 345 td~~~~~~~~Gip~v~~Gpg~~---~~aH~~n---E~i~i~~l~~~~~~~~~~~~~~~~ 397 (399)
T PRK13004 345 TNGVSIAGRAGIPTIGFGPGKE---PLAHAPN---EYTWKEQLVKAAAMYAAIPKSLLK 397 (399)
T ss_pred cCCeEEehhcCCCEEEECCCcc---cccCCCC---ceeEHHHHHHHHHHHHHHHHHHhh
Confidence 5544454 57999987655432 2358864 789999999999999999988874
No 100
>KOG3946|consensus
Probab=92.91 E-value=0.2 Score=48.34 Aligned_cols=48 Identities=21% Similarity=0.333 Sum_probs=41.1
Q ss_pred CcchHHHHHHHHHHccCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEEEe
Q psy9208 66 FQAHTYSTLADFVDKFGPRMTGSEALENSIDFMVKESKDFGLEVWTENVTA 116 (446)
Q Consensus 66 ~~~~~~~~l~~ls~~~g~R~~GS~g~~~a~~~i~~~l~~~Gl~v~~q~f~~ 116 (446)
..++.++.|.-+- -+|+.||+|+.+.-+||.+.|+++|+.|..+.|.-
T Consensus 49 ~~~~~~~~L~p~l---v~Rvpgs~g~~~vr~~i~~~l~~l~w~ve~~~f~~ 96 (338)
T KOG3946|consen 49 DWNRLWENLLPIL---VPRVPGSPGSRQVRRFIIQHLRNLGWAVETDAFTD 96 (338)
T ss_pred CHHHHHHhhhhhh---ccccCCCCccHHHHHHHHHHHHhcCceeeeccccc
Confidence 4557788777554 48999999999999999999999999999999853
No 101
>PRK08737 acetylornithine deacetylase; Provisional
Probab=92.38 E-value=0.12 Score=52.61 Aligned_cols=83 Identities=20% Similarity=0.192 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHhCCCCceEEEEEEEeEEeCCceeceEEEEEcCcCCCCcEEEEEecCCCCCC------------------
Q psy9208 226 PEYAEMLYRMYRRGDGPVVVSINIDARNVGTTNTRNTIVQIRGRECPDKVVITSGHLDSWDV------------------ 287 (446)
Q Consensus 226 ~~~~~~L~~~l~~g~~pv~v~l~~~~~~~~~~~s~NVia~i~G~~~~~~~Vvl~aH~Ds~~~------------------ 287 (446)
.+.++.|.+.++ | +.++ +... . ....|+|+. +|. +.|++.+|+|.++.
T Consensus 30 ~~~~~~l~~~l~-g---~~~~--~~~~--~-~~~~nli~~-~g~----~~lll~gH~DtVp~~~~w~~~Pf~~~~~~g~l 95 (364)
T PRK08737 30 GGIFDYLRAQLP-G---FQVE--VIDH--G-AGAVSLYAV-RGT----PKYLFNVHLDTVPDSPHWSADPHVMRRTDDRV 95 (364)
T ss_pred HHHHHHHHHHhC-C---CEEE--EecC--C-CCceEEEEE-cCC----CeEEEEeeeCCCCCCCCCCCCCCceEEECCEE
Confidence 345666777664 5 4332 2211 1 234699986 453 35999999999874
Q ss_pred -CCCcccCCCceeeE------------EEeeCcccccc-ccHHHHHHHh
Q psy9208 288 -GQGAMDDGGGAFIS------------GILWTAEEQGY-VGAIAYVKKH 322 (446)
Q Consensus 288 -g~Ga~DngsG~a~l------------f~~~~aEE~Gl-~GS~~y~~~~ 322 (446)
|.|+.|.-+|++++ |++...||.|. .|++++++..
T Consensus 96 yGrGa~DmKg~~aa~l~a~~~~~~~v~~~~~~dEE~g~~~g~~~~~~~~ 144 (364)
T PRK08737 96 IGLGVCDIKGAAAALLAAANAGDGDAAFLFSSDEEANDPRCVAAFLARG 144 (364)
T ss_pred EEECcccchHHHHHHHHHHHccCCCEEEEEEcccccCchhhHHHHHHhC
Confidence 35888887777666 89999999987 6989998864
No 102
>PRK07205 hypothetical protein; Provisional
Probab=92.24 E-value=0.16 Score=53.22 Aligned_cols=59 Identities=25% Similarity=0.291 Sum_probs=47.8
Q ss_pred ceEEEEEcCcCCCCcEEEEEecCCCCCC---------------------CCCcccCCCceeeE-----------------
Q psy9208 260 RNTIVQIRGRECPDKVVITSGHLDSWDV---------------------GQGAMDDGGGAFIS----------------- 301 (446)
Q Consensus 260 ~NVia~i~G~~~~~~~Vvl~aH~Ds~~~---------------------g~Ga~DngsG~a~l----------------- 301 (446)
+++++++ |+ ..+.|++.+|+|.++. |.|+.|+-+|++++
T Consensus 65 ~~~~~~~-g~--~~~~lll~gH~DvVp~~~~~~W~~~Pf~~~v~dg~lyGRGa~DmKgglaa~l~Al~~l~~~~~~~~~~ 141 (444)
T PRK07205 65 YYGYAEI-GQ--GEELLAILCHLDVVPEGDLSDWQTPPFEAVEKDGCLFGRGTQDDKGPSMAALYAVKALLDAGVQFNKR 141 (444)
T ss_pred eEEEEEe-cC--CCcEEEEEEeeccCCCCCcccCCCCCCceEEECCEEEECCcccCcHHHHHHHHHHHHHHHcCCCCCCc
Confidence 3667665 43 3457999999999874 37999999998877
Q ss_pred --EEeeCccccccccHHHHHHH
Q psy9208 302 --GILWTAEEQGYVGAIAYVKK 321 (446)
Q Consensus 302 --f~~~~aEE~Gl~GS~~y~~~ 321 (446)
|++.+.||.|..|+++|++.
T Consensus 142 i~l~~~~dEE~g~~g~~~~~~~ 163 (444)
T PRK07205 142 IRFIFGTDEETLWRCMNRYNEV 163 (444)
T ss_pred EEEEEECCcccCcccHHHHHhC
Confidence 88889999998999999975
No 103
>KOG4628|consensus
Probab=92.07 E-value=0.21 Score=50.05 Aligned_cols=72 Identities=13% Similarity=0.081 Sum_probs=51.5
Q ss_pred ccccEEEEecCCcCcchhhhhhhhhHHHHHHcCcEEEEEeccCCCCCCCCCCccccCCCCCCCCCEeEcCHHHHHHHHHH
Q psy9208 156 VAGKIVVFNQDFVSYGETVKYRSKGASVASKYGAVATLIRSVTPYSLATPHTGHQSYDAAVKPIPTACIAPEYAEMLYRM 235 (446)
Q Consensus 156 v~GkIvlv~~~~~~yg~~~~~~~~~~~~A~~~GA~avii~~~~~~~~~~p~~g~~~~~~~~~~iP~~~Is~~~~~~L~~~ 235 (446)
....++||.|+.|.|.. | +.+|.++|.+|+|+||+....... .... ....-.||++.|+...++.|.+.
T Consensus 78 ~~~~laLI~Rg~CsFe~------K-v~~AQ~aGfkaaIVynn~~~~~lv-~~~~---~~~~v~i~~~~vs~~~ge~l~~~ 146 (348)
T KOG4628|consen 78 STSFLALIRRGGCSFED------K-VLNAQRAGFKAAIVYNNVGSEDLV-AMAS---NPSKVDIHIVFVSVFSGELLSSY 146 (348)
T ss_pred CcceEEEEEccCCchHH------H-HhhcccccCceEEEecCCCCchhe-eecc---CCccceeEEEEEeeehHHHHHHh
Confidence 45689999999887653 4 899999999999999964322111 0111 23456799999999999999986
Q ss_pred HhC
Q psy9208 236 YRR 238 (446)
Q Consensus 236 l~~ 238 (446)
..+
T Consensus 147 ~~~ 149 (348)
T KOG4628|consen 147 AGR 149 (348)
T ss_pred hcc
Confidence 433
No 104
>TIGR03106 trio_M42_hydro hydrolase, peptidase M42 family. This model describes a subfamily of MEROPS peptidase family M42, a glutamyl aminopeptidase family that also includes the cellulase CelM from Clostridium thermocellum and deblocking aminopeptidases that can remove acylated amino acids. Members of this family occur in a three gene cassette with an amidotransferase (TIGR03104)in the asparagine synthase (glutamine-hydrolyzing) family, and a probable acetyltransferase (TIGR03103) in the GNAT family.
Probab=91.83 E-value=0.31 Score=49.30 Aligned_cols=114 Identities=17% Similarity=0.050 Sum_probs=67.4
Q ss_pred EEeeCccccccccHHHHHHHhHhhhcceEEEEEecCCCCCc----c----ce-----eeecChhHHHHHHHHHHHhCCCC
Q psy9208 302 GILWTAEEQGYVGAIAYVKKHQEELKNITVAMESDDGTFTP----F----GL-----SLKGSPEAACILNKVLRLFKPIN 368 (446)
Q Consensus 302 f~~~~aEE~Gl~GS~~y~~~~~~~~~~i~~~in~D~g~~~~----~----~~-----~~~gs~~l~~l~~~~~~~~~~~~ 368 (446)
|++...||.| .|+.+ .... .+..+|.+|.....+ . .+ .....+.+.+.+.++++ ..+
T Consensus 211 ~~~t~qEEvG-~gaa~---~i~p---d~a~~i~vd~~~~~p~~~~lg~Gp~i~~~d~~~~~~~~l~~~l~~~A~---~~~ 280 (343)
T TIGR03106 211 PLFTITEEVG-SGASH---ALPP---DVAELVSVDNGTVAPGQNSSEHGVTIAMADSSGPFDYHLTRKLIRLCQ---DHG 280 (343)
T ss_pred EEEECCcccC-ccchh---cccH---hhhccEEEEecccCCCCCcCCCCceEEEecCCCCCCHHHHHHHHHHHH---HcC
Confidence 8888999999 57321 1111 222335555421111 0 12 11223566666666665 456
Q ss_pred CccccCCCCCCCCchHhHH--hCCCeEEEeeeCCCCCCCCCcCCCCCcCCCCHHHHHHHHHHHHHHH
Q psy9208 369 ATRLVQSKYPVGSDIELFQ--EKNIPGVALLNDNAKYFWYHHTRADTMSVLDSDTLDLCTALWGGVA 433 (446)
Q Consensus 369 ~~~~~~~~~~~gSD~~~F~--~~GIP~~~l~~~~~~y~~~yHt~~Dt~d~ld~~~l~~~~~~~a~~~ 433 (446)
+++........|||-..+. ..|||++.+.-.. .|-|| .+.++.+.++...+++..++
T Consensus 281 Ip~Q~~~~~~~gtDa~~~~~~~~Gi~t~~i~iP~----Ry~Hs----~e~~~~~D~~~~~~Ll~~~~ 339 (343)
T TIGR03106 281 IPHRRDVFRYYRSDAASAVEAGHDIRTALVTFGL----DASHG----YERTHIDALEALANLLVAYA 339 (343)
T ss_pred CCcEEEecCCCCChHHHHHHcCCCCCEEEeeccc----cchhh----hhhccHHHHHHHHHHHHHHh
Confidence 6654432211478887766 4799999987643 23477 68888999999998877765
No 105
>TIGR01887 dipeptidaselike dipeptidase, putative. This model represents a clade of probable zinc dipeptidases, closely related to the characterized non-specific dipeptidase, PepV. Many enzymes in this clade have been given names including the terms "Xaa-His" and "carnosinase" due to the early mis-characterization of the Lactobacillus delbrueckii PepV enzyme. These names are likely too specific.
Probab=91.52 E-value=0.18 Score=53.01 Aligned_cols=50 Identities=30% Similarity=0.442 Sum_probs=41.1
Q ss_pred CcEEEEEecCCCCCC-------------------CCCcccCCCceeeE-------------------EEeeCcccccccc
Q psy9208 273 DKVVITSGHLDSWDV-------------------GQGAMDDGGGAFIS-------------------GILWTAEEQGYVG 314 (446)
Q Consensus 273 ~~~Vvl~aH~Ds~~~-------------------g~Ga~DngsG~a~l-------------------f~~~~aEE~Gl~G 314 (446)
.+.|++.+|+|.++. |.|+.|+-+|++++ |++...||.|..|
T Consensus 67 ~~~l~l~gH~D~Vp~~~~W~~~Pf~~~~~~g~lyGRGa~D~KG~laa~l~a~~~l~~~~~~~~~~i~~~~~~dEE~g~~g 146 (447)
T TIGR01887 67 EEYLGILGHLDVVPAGDGWTSPPFEAEIKDGRIYGRGTLDDKGPTIAALYAMKILKELGLKLKKKIRFIFGTDEETGWAC 146 (447)
T ss_pred CCeEEEEeecCCCCCCCCCcCCCCceEEECCEEEECCcccCcHHHHHHHHHHHHHHHcCCCCCCcEEEEEECCcccCcHh
Confidence 357999999998863 47888888777655 8888999999999
Q ss_pred HHHHHHHh
Q psy9208 315 AIAYVKKH 322 (446)
Q Consensus 315 S~~y~~~~ 322 (446)
+.+|+++.
T Consensus 147 ~~~~l~~~ 154 (447)
T TIGR01887 147 IDYYFEHE 154 (447)
T ss_pred HHHHHHhc
Confidence 99999763
No 106
>TIGR01900 dapE-gram_pos succinyl-diaminopimelate desuccinylase. This enzyme is involved in the biosynthesis of lysine, and is related to the enzyme acetylornithine deacetylase and other amidases and peptidases found within pfam01546.
Probab=90.35 E-value=0.25 Score=50.41 Aligned_cols=61 Identities=26% Similarity=0.299 Sum_probs=46.1
Q ss_pred eEEEEEcCcCCCCcEEEEEecCCCCCC-------------------------------CCCcccCCCceeeE--------
Q psy9208 261 NTIVQIRGRECPDKVVITSGHLDSWDV-------------------------------GQGAMDDGGGAFIS-------- 301 (446)
Q Consensus 261 NVia~i~G~~~~~~~Vvl~aH~Ds~~~-------------------------------g~Ga~DngsG~a~l-------- 301 (446)
||++.+.++ +.+.|++.+|+|.++. |.|+.|+-+|++++
T Consensus 42 nvva~~~~~--~~~~l~l~gH~DtVp~~~~~~~~W~~~p~~~~~~~~~~~~~~~g~lyGRGa~DmKgg~aa~l~a~~~l~ 119 (373)
T TIGR01900 42 NVLARTDFG--KASRVILAGHIDTVPIADNFPPKWLEPGDSLIREEIAHAHPEDGILWGCGATDMKAGDAVMLHLAATLD 119 (373)
T ss_pred EEEEecCCC--CCCeEEEeCccccccCCCCChhhhccCcccccccccccccccCCEEEecCchhhhHHHHHHHHHHHHHh
Confidence 999998643 3456999999999753 25777877777665
Q ss_pred -------------EEeeCccccc--cccHHHHHHHhH
Q psy9208 302 -------------GILWTAEEQG--YVGAIAYVKKHQ 323 (446)
Q Consensus 302 -------------f~~~~aEE~G--l~GS~~y~~~~~ 323 (446)
|++...||.| ..|+.++++++.
T Consensus 120 ~~~~~~~~~~~i~~~~~~dEE~~~~~~G~~~~~~~~~ 156 (373)
T TIGR01900 120 GRAPETELKHDLTLIAYDCEEVAAEKNGLGHIRDAHP 156 (373)
T ss_pred hhccccCCCCCEEEEEEecccccCCCCCHHHHHHhCc
Confidence 7778889975 359999998754
No 107
>KOG3920|consensus
Probab=89.74 E-value=0.23 Score=43.73 Aligned_cols=76 Identities=14% Similarity=0.129 Sum_probs=49.1
Q ss_pred ccccEEEEecCCcCcchhhhhhhhhHHHHHHcCcEEEEEeccCCCCCCCCCC--ccccCCCCCCCCCEeEcCHHHHHHHH
Q psy9208 156 VAGKIVVFNQDFVSYGETVKYRSKGASVASKYGAVATLIRSVTPYSLATPHT--GHQSYDAAVKPIPTACIAPEYAEMLY 233 (446)
Q Consensus 156 v~GkIvlv~~~~~~yg~~~~~~~~~~~~A~~~GA~avii~~~~~~~~~~p~~--g~~~~~~~~~~iP~~~Is~~~~~~L~ 233 (446)
+.|.|+|++||+|+|- .| ..++.++||.++||-...+.....-+. -.+........||++.+-..+|-.++
T Consensus 86 ~~d~vaL~eRGeCSFl------~K-tl~~e~aGa~aiiitd~~~~~~sf~~YveMI~D~sq~~AniPa~fllg~~Gy~ir 158 (193)
T KOG3920|consen 86 APDSVALMERGECSFL------VK-TLNGEKAGATAIIITDSQNYEYSFHQYVEMIPDESQDRANIPAVFLLGVTGYYIR 158 (193)
T ss_pred CCCcEEEEecCCceee------eh-hhhhhhcCceEEEEecCCCCchhHHHHHHhcCcccccccCCceEEEeccceEEEe
Confidence 6799999999998764 34 789999999999996543322110000 00000123457999988877777666
Q ss_pred HHHhC
Q psy9208 234 RMYRR 238 (446)
Q Consensus 234 ~~l~~ 238 (446)
..|++
T Consensus 159 ~sL~r 163 (193)
T KOG3920|consen 159 VSLKR 163 (193)
T ss_pred hhHHH
Confidence 66654
No 108
>PRK06133 glutamate carboxypeptidase; Reviewed
Probab=88.21 E-value=2.1 Score=44.25 Aligned_cols=56 Identities=11% Similarity=-0.004 Sum_probs=42.7
Q ss_pred CCCchHhHHhCCCeEEEeeeCCCCCCCCCcCCCCCcCCCCHHHHHHHHHHHHHHHHHHhcC
Q psy9208 379 VGSDIELFQEKNIPGVALLNDNAKYFWYHHTRADTMSVLDSDTLDLCTALWGGVAYILADL 439 (446)
Q Consensus 379 ~gSD~~~F~~~GIP~~~l~~~~~~y~~~yHt~~Dt~d~ld~~~l~~~~~~~a~~~~~lA~~ 439 (446)
.++|...|...|||++.+..+... ...|++. ++++.+.+...+++++.+++.++..
T Consensus 354 g~tDa~~~~~~gip~v~~g~G~~~--~~aH~~n---E~i~i~~~~~~~~~~~~~~~~~~~~ 409 (410)
T PRK06133 354 GGTDAAFAAGSGKAAVLEGFGLVG--FGAHSND---EYIELNSIVPRLYLLTRMIMELSRD 409 (410)
T ss_pred CCchHHHHHhcCCCceEecccCCC--CCCCCCC---cEEEcccHHHHHHHHHHHHHHhhcC
Confidence 458987777889999875444321 2358864 8899999999999999999988764
No 109
>PLN02693 IAA-amino acid hydrolase
Probab=85.30 E-value=0.84 Score=47.80 Aligned_cols=55 Identities=20% Similarity=0.187 Sum_probs=34.2
Q ss_pred CCchHhHHhCCCeEEEeeeCCCCC---CCCCcCCCCCcCCCCHHHHHHHHHHHHHHHHHHh
Q psy9208 380 GSDIELFQEKNIPGVALLNDNAKY---FWYHHTRADTMSVLDSDTLDLCTALWGGVAYILA 437 (446)
Q Consensus 380 gSD~~~F~~~GIP~~~l~~~~~~y---~~~yHt~~Dt~d~ld~~~l~~~~~~~a~~~~~lA 437 (446)
+++...|+...||+++++-+.... .+-.|++. -.+|.+.|...+++++.+++.+-
T Consensus 364 gseDf~~~~~~vP~~~~~lG~~~~~~~~~~~H~~~---f~~de~~l~~~~~~~~~~~~~~l 421 (437)
T PLN02693 364 GSEDFSYFAETIPGHFSLLGMQDETNGYASSHSPL---YRINEDVLPYGAAIHATMAVQYL 421 (437)
T ss_pred eechHHHHHHHhhhhEEEEecCCCCCCCCCCCCCC---cCCCHHHHHHHHHHHHHHHHHHH
Confidence 444445555699998766553211 12356652 34567888888888888777653
No 110
>PLN02280 IAA-amino acid hydrolase
Probab=85.20 E-value=0.81 Score=48.49 Aligned_cols=53 Identities=15% Similarity=0.216 Sum_probs=34.2
Q ss_pred CCchHhHHhCCCeEEEeeeCCC----CCCCCCcCCCCCcCCCCHHHHHHHHHHHHHHHHHH
Q psy9208 380 GSDIELFQEKNIPGVALLNDNA----KYFWYHHTRADTMSVLDSDTLDLCTALWGGVAYIL 436 (446)
Q Consensus 380 gSD~~~F~~~GIP~~~l~~~~~----~y~~~yHt~~Dt~d~ld~~~l~~~~~~~a~~~~~l 436 (446)
++|..-|.+ +||++.+..+.. .-....|++ -+.+|.+.|...+++++.++..+
T Consensus 417 ~tD~~~~~~-~vP~i~~glG~~~~~~G~~~~~Htp---~e~id~~~L~~~~~~~~~~~~~~ 473 (478)
T PLN02280 417 AEDFSFYSQ-VVPAAFYYIGIRNETLGSTHTGHSP---YFMIDEDVLPIGAAVHAAIAERY 473 (478)
T ss_pred echHHHHHh-hCCEEEEEEeecCCCCCCCCCCCCC---CCcCCHHHHHHHHHHHHHHHHHH
Confidence 367755554 699997754421 001134764 35689999999999888887654
No 111
>TIGR03526 selenium_YgeY putative selenium metabolism hydrolase. SelD, selenophosphate synthase, is the selenium donor protein for both selenocysteine and selenouridine biosynthesis systems, but it occurs also in a few prokaryotes that have neither of those pathways. The method of partial phylogenetic profiling, starting from such orphan-selD genomes, identifies this protein as one of those most strongly correlated to SelD occurrence. Its distribution is also well correlated with that of family TIGR03309, a putative accessory protein of labile selenium (non-selenocysteine) enzyme maturation. This family includes the uncharacterized YgeY of Escherichia coli, and belongs to a larger family of metalloenzymes in which some are known peptidases, others enzymes of different types.
Probab=84.54 E-value=1.1 Score=45.95 Aligned_cols=51 Identities=10% Similarity=0.093 Sum_probs=34.9
Q ss_pred CchHhH-HhCCCeEEEeeeCCCCCCCCCcCCCCCcCCCCHHHHHHHHHHHHHHHHHHh
Q psy9208 381 SDIELF-QEKNIPGVALLNDNAKYFWYHHTRADTMSVLDSDTLDLCTALWGGVAYILA 437 (446)
Q Consensus 381 SD~~~F-~~~GIP~~~l~~~~~~y~~~yHt~~Dt~d~ld~~~l~~~~~~~a~~~~~lA 437 (446)
+|-..| .+.|||++.+..+.. ..-|++. ++++.+.+...+++++.++..+.
T Consensus 343 ~~~~~~~~~~g~p~v~~Gpg~~---~~aH~~d---E~i~i~~l~~~~~~~~~~~~~~~ 394 (395)
T TIGR03526 343 TNGVSIMGRHGIPVIGFGPGDE---DQAHAPN---EKTWKEDLVKAAAMYAAIPTVYL 394 (395)
T ss_pred cccceehhhcCCCEEEECCcch---hhccCCC---ceEEHHHHHHHHHHHHHHHHHhc
Confidence 344334 367899885544321 2347763 78999999999999998887765
No 112
>TIGR03320 ygeY M20/DapE family protein YgeY. Members of this protein family, including the YgeY protein of Escherichia coli, typically are found in extended genomic regions associated with purine catabolism. Homologs include peptidases and deacylases of the M20/M25 /M40 and DapE/ArgE families. The function is unknown.
Probab=83.43 E-value=1.4 Score=45.32 Aligned_cols=51 Identities=10% Similarity=0.092 Sum_probs=34.2
Q ss_pred CchHhH-HhCCCeEEEeeeCCCCCCCCCcCCCCCcCCCCHHHHHHHHHHHHHHHHHHh
Q psy9208 381 SDIELF-QEKNIPGVALLNDNAKYFWYHHTRADTMSVLDSDTLDLCTALWGGVAYILA 437 (446)
Q Consensus 381 SD~~~F-~~~GIP~~~l~~~~~~y~~~yHt~~Dt~d~ld~~~l~~~~~~~a~~~~~lA 437 (446)
+|-..| .+.|||++.+..+.. ..-|++. ++++.+.+...+++++.+++.+.
T Consensus 343 ~~~~~~~~~~g~p~v~~Gpg~~---~~aH~~n---E~v~i~~l~~~~~~~~~~~~~~~ 394 (395)
T TIGR03320 343 TNGVSIMGRHGIPVIGFGPGDE---DQAHAPN---EKTWKEDLVRAAAMYAAIPTVYL 394 (395)
T ss_pred cccceehhhcCCCEEEECCCch---hhccCCC---cEEEHHHHHHHHHHHHHHHHHhh
Confidence 344333 367888886554321 2347753 78899999999998888887653
No 113
>PF04114 Gaa1: Gaa1-like, GPI transamidase component ; InterPro: IPR007246 GPI (glycosyl phosphatidyl inositol) transamidase is a multiprotein complex required for a terminal step of adding the glycosylphosphatidylinositol (GPI) anchor attachment onto proteins. Gpi16, Gpi8 and Gaa1 form a sub-complex of the GPI transamidase.; GO: 0016021 integral to membrane, 0042765 GPI-anchor transamidase complex
Probab=80.28 E-value=18 Score=38.66 Aligned_cols=165 Identities=12% Similarity=0.118 Sum_probs=93.3
Q ss_pred eeceEEEEEcCcC-CCCcEEEEEecCCCCCCCCCcccCCCceeeE------------------EEeeCccccccccHHHH
Q psy9208 258 NTRNTIVQIRGRE-CPDKVVITSGHLDSWDVGQGAMDDGGGAFIS------------------GILWTAEEQGYVGAIAY 318 (446)
Q Consensus 258 ~s~NVia~i~G~~-~~~~~Vvl~aH~Ds~~~g~Ga~DngsG~a~l------------------f~~~~aEE~Gl~GS~~y 318 (446)
+..||+|.++..+ +..|.+|+.+.++..+ | .-|..|++.+ |++.+. +..|.+.|
T Consensus 2 ~G~nvy~i~rapR~d~tEaivl~~~~~~~~---~-~~n~~~v~l~lal~~~~~~~~~wsKDii~l~~~~---~~~g~~aw 74 (504)
T PF04114_consen 2 SGTNVYGILRAPRGDGTEAIVLVVPWRDSD---G-EYNAGGVALALALARYFRRQSYWSKDIIFLFTDD---ELAGMQAW 74 (504)
T ss_pred CceEEEEEEecCCCCCceeEEEEEecCCCC---c-ccchhhHHHHHHHHHHhhhchhhhccEEEEecCC---cchHHHHH
Confidence 3579999997553 4568999999987765 2 3345666555 444332 35799999
Q ss_pred HHHhHhh---------h----cceEEEEEecCCCCCc--cceeeecCh------hHHHHHHHHHHHhCC--CCCc-----
Q psy9208 319 VKKHQEE---------L----KNITVAMESDDGTFTP--FGLSLKGSP------EAACILNKVLRLFKP--INAT----- 370 (446)
Q Consensus 319 ~~~~~~~---------~----~~i~~~in~D~g~~~~--~~~~~~gs~------~l~~l~~~~~~~~~~--~~~~----- 370 (446)
++.+-.. + ..|.+.+|+|-..... ..+..+|.. ++-.++..+++. ++ .+..
T Consensus 75 l~~Yh~~~~~~~~~~~l~~~~G~i~aAl~le~~~~~~~~v~i~~eG~NGqLPNLDL~N~~~~i~~~-~gi~~~~~~~~~~ 153 (504)
T PF04114_consen 75 LEAYHDSNTKGLSSSPLPLRAGSIQAALVLEYPSDSFSSVEIKYEGLNGQLPNLDLVNTVVRIAEK-EGIPMGVSLHLQP 153 (504)
T ss_pred HHHHhCCCCccccccCCCCCCcceeEEEEEEecCCCccEEEEEEecCCCCCCCchHHHHHHHHHHh-cCCCccccccccc
Confidence 9875321 2 1577888888743322 233444432 233333333332 11 0000
Q ss_pred --------c----------c-cCCCCCCCCchHhHHhCCCeEEEeeeCCCCCCCCCcCCCCCcCCCCHHHHHHHHHHHHH
Q psy9208 371 --------R----------L-VQSKYPVGSDIELFQEKNIPGVALLNDNAKYFWYHHTRADTMSVLDSDTLDLCTALWGG 431 (446)
Q Consensus 371 --------~----------~-~~~~~~~gSD~~~F~~~GIP~~~l~~~~~~y~~~yHt~~Dt~d~ld~~~l~~~~~~~a~ 431 (446)
+ + ..-.......|..|.+.+|.++++..... +.+ ...| +.+.++++-.
T Consensus 154 ~~~~~~~~~~~~l~~l~~~~~~~a~g~p~g~H~~f~~y~I~aiTl~~~~~------~~~----~~~~---~~~~gr~~E~ 220 (504)
T PF04114_consen 154 SDWHSNSDYESRLKTLLRGMLNQALGGPTGPHGAFLRYRIDAITLRGVKS------TGP----GPHD---FTAFGRILEG 220 (504)
T ss_pred cccccccchHHHHHHHHHHHHHhccCCCCCCchhhhhcCccEEEEecccC------CCC----CCcC---HHHHHHHHHH
Confidence 0 0 00111133789999999999999954221 111 1112 3456677778
Q ss_pred HHHHHhcCCCCC
Q psy9208 432 VAYILADLSVEL 443 (446)
Q Consensus 432 ~~~~lA~~~~~~ 443 (446)
+...+-|..|+|
T Consensus 221 ~~RslNNLlE~~ 232 (504)
T PF04114_consen 221 IFRSLNNLLERF 232 (504)
T ss_pred HHHHHHHHHHhH
Confidence 888888877765
No 114
>PRK02256 putative aminopeptidase 1; Provisional
Probab=79.59 E-value=3.7 Score=43.24 Aligned_cols=67 Identities=12% Similarity=-0.036 Sum_probs=41.5
Q ss_pred ChhHHHHHHHHHHHhCCCCCcccc-------CCCCCCCCchHhHH-hCCCeEEEeeeCCCCCCCCCcCCCCCcCCCCHHH
Q psy9208 350 SPEAACILNKVLRLFKPINATRLV-------QSKYPVGSDIELFQ-EKNIPGVALLNDNAKYFWYHHTRADTMSVLDSDT 421 (446)
Q Consensus 350 s~~l~~l~~~~~~~~~~~~~~~~~-------~~~~~~gSD~~~F~-~~GIP~~~l~~~~~~y~~~yHt~~Dt~d~ld~~~ 421 (446)
++.+..++.++++. .+++... .++ +++| .|.. ..|||++.+.-.- .+-||+.-+...-|.+.
T Consensus 381 ~~~~~~~i~~iA~~---~~Ip~Q~~~~~r~d~~~--GgTi-g~~~s~~Gi~tvdiGiP~----l~MHS~rE~~~~~D~~~ 450 (462)
T PRK02256 381 NAEFVAEVRNLFNK---NNVVWQTAELGKVDQGG--GGTI-AKFLANYGMEVIDCGVAL----LSMHSPFEIASKADIYE 450 (462)
T ss_pred CHHHHHHHHHHHHH---cCCCEEEEEeecCCCCC--cChH-HHHHcCCCCcEEEechhh----hccccHHHHhhHHHHHH
Confidence 45566677777764 3554322 123 4578 5655 6899999987632 34599877776666665
Q ss_pred HHHHH
Q psy9208 422 LDLCT 426 (446)
Q Consensus 422 l~~~~ 426 (446)
+.+..
T Consensus 451 ~~~ll 455 (462)
T PRK02256 451 TYKAY 455 (462)
T ss_pred HHHHH
Confidence 54444
No 115
>PRK13381 peptidase T; Provisional
Probab=78.13 E-value=5.8 Score=40.80 Aligned_cols=29 Identities=14% Similarity=0.331 Sum_probs=24.3
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHcCCe-EEE
Q psy9208 83 PRMTGSEALENSIDFMVKESKDFGLE-VWT 111 (446)
Q Consensus 83 ~R~~GS~g~~~a~~~i~~~l~~~Gl~-v~~ 111 (446)
++...++++++.++||.++|++.|++ +..
T Consensus 22 ~~~~~~~~~~~~~~~l~~~l~~~G~~~~~~ 51 (404)
T PRK13381 22 GTLPSTPGQHELAKLLADELRELGLEDIVI 51 (404)
T ss_pred CCCcCChhHHHHHHHHHHHHHHcCCCcEEE
Confidence 45566889999999999999999996 543
No 116
>TIGR03176 AllC allantoate amidohydrolase. This enzyme catalyzes the breakdown of allantoate, first to ureidoglycine by hydrolysis and then decarboxylation of one of the two equivalent ureido groups. Ureidoglycine then spontaneously exchanges ammonia for water resulting in ureidoglycolate. This enzyme is an alternative to allantoicase (3.5.3.4) which releases urea.
Probab=77.25 E-value=3.3 Score=42.81 Aligned_cols=79 Identities=14% Similarity=0.176 Sum_probs=50.0
Q ss_pred ChhHHHHHHHHHHHhCCCCCccccCCCCCCCCchHhHHhCCCeEEEeeeCCCCCCCCCcCCCCCcCCCCHHHHHHHHHHH
Q psy9208 350 SPEAACILNKVLRLFKPINATRLVQSKYPVGSDIELFQEKNIPGVALLNDNAKYFWYHHTRADTMSVLDSDTLDLCTALW 429 (446)
Q Consensus 350 s~~l~~l~~~~~~~~~~~~~~~~~~~~~~~gSD~~~F~~~GIP~~~l~~~~~~y~~~yHt~~Dt~d~ld~~~l~~~~~~~ 429 (446)
++.+.+++.+.++.. +......+. ..++|...|.+ .+|++.++-.... ...|++ -+.++.+.+...++++
T Consensus 326 d~~lv~~l~~a~~~~---~~~~~~~~s-ggg~Da~~~~~-~vP~~~ifgp~~~--g~~H~p---~E~v~~e~l~~g~~vl 395 (406)
T TIGR03176 326 NKEIVAIIEQLAKAE---KLNYRLMHS-GAGHDAQIFAP-RVPTAMIFVPSIG--GISHNP---AERTNIEDLVEGVKTL 395 (406)
T ss_pred CHHHHHHHHHHHHHc---CCCceecCc-ccHHHHHHHHH-HCCEEEEEEeCCC--CCCCCc---cccCCHHHHHHHHHHH
Confidence 345666666665542 222111222 13478876665 5999876654321 234775 3678999999999999
Q ss_pred HHHHHHHhc
Q psy9208 430 GGVAYILAD 438 (446)
Q Consensus 430 a~~~~~lA~ 438 (446)
+.+++.|+.
T Consensus 396 ~~~l~~l~~ 404 (406)
T TIGR03176 396 ADMLYELAY 404 (406)
T ss_pred HHHHHHHhc
Confidence 999998875
No 117
>PRK13590 putative bifunctional OHCU decarboxylase/allantoate amidohydrolase; Provisional
Probab=76.71 E-value=6.1 Score=43.11 Aligned_cols=47 Identities=13% Similarity=0.126 Sum_probs=38.1
Q ss_pred cchHHHHHHHHHHccC----------CCCCCCHHHHHHHHHHHHHHHHcCC-eEEEEEE
Q psy9208 67 QAHTYSTLADFVDKFG----------PRMTGSEALENSIDFMVKESKDFGL-EVWTENV 114 (446)
Q Consensus 67 ~~~~~~~l~~ls~~~g----------~R~~GS~g~~~a~~~i~~~l~~~Gl-~v~~q~f 114 (446)
..+.++.|..|+. ++ .|.+-|+++.++.+|+.+.|++.|+ +|+.+++
T Consensus 180 ~~r~~~~~~~l~~-~~~~~~~~~~g~~R~~~s~~~~~~~~~l~~~~~~~Gl~~v~~D~~ 237 (591)
T PRK13590 180 GNDVWDWAERLAA-HSDPGYAEKGQLTVTYLTDAHRACAQQISHWMRDCGFDEVHIDAV 237 (591)
T ss_pred HHHHHHHHHHHhc-ccCCCCCCCCceeeeeCCHHHHHHHHHHHHHHHHcCCCeeeECCC
Confidence 4467777777764 22 4888899999999999999999999 7887765
No 118
>PTZ00371 aspartyl aminopeptidase; Provisional
Probab=74.73 E-value=10 Score=40.10 Aligned_cols=74 Identities=18% Similarity=0.090 Sum_probs=48.6
Q ss_pred ChhHHHHHHHHHHHhCCCCCcccc--CC-CCCCCCchHhHH--hCCCeEEEeeeCCCCCCCCCcCCCCCcCCCCHHHHHH
Q psy9208 350 SPEAACILNKVLRLFKPINATRLV--QS-KYPVGSDIELFQ--EKNIPGVALLNDNAKYFWYHHTRADTMSVLDSDTLDL 424 (446)
Q Consensus 350 s~~l~~l~~~~~~~~~~~~~~~~~--~~-~~~~gSD~~~F~--~~GIP~~~l~~~~~~y~~~yHt~~Dt~d~ld~~~l~~ 424 (446)
++.+..++.++++. .+++... .. ....|||-.|+. +.|||++.+.-.- .+-|++.-+...-|...+.+
T Consensus 374 d~~~~a~i~~la~~---~~Ip~Q~~~~~~d~~~GsTig~i~~s~~Gi~tvDiGiP~----l~MHS~rE~~~~~D~~~~~~ 446 (465)
T PTZ00371 374 NGVTASLLKAIAKK---ANIPIQEFVVKNDSPCGSTIGPILSSNLGIRTVDIGIPQ----LAMHSIREMCGVVDIYYLVK 446 (465)
T ss_pred CHHHHHHHHHHHHH---cCCCEEEEEecCCCCCcchHHHHHHhCCCCcEEEechhh----cccccHHHHccHHHHHHHHH
Confidence 45667777777764 3555322 11 111379999987 4899999887532 34599988888888777666
Q ss_pred HHHHHH
Q psy9208 425 CTALWG 430 (446)
Q Consensus 425 ~~~~~a 430 (446)
..+.+.
T Consensus 447 l~~af~ 452 (465)
T PTZ00371 447 LIKAFF 452 (465)
T ss_pred HHHHHH
Confidence 555443
No 119
>PRK08651 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=72.92 E-value=8.1 Score=39.41 Aligned_cols=45 Identities=16% Similarity=0.226 Sum_probs=28.7
Q ss_pred hHHHHHHHHHHccCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEE
Q psy9208 69 HTYSTLADFVDKFGPRMTGSEALENSIDFMVKESKDFGLEVWTENV 114 (446)
Q Consensus 69 ~~~~~l~~ls~~~g~R~~GS~g~~~a~~~i~~~l~~~Gl~v~~q~f 114 (446)
...+.|++|.. +..-..-..++.++++||.++|++.|++++.++.
T Consensus 7 ~~~~~l~~lv~-i~S~s~~~~~~~~~a~~l~~~l~~~G~~~~~~~~ 51 (394)
T PRK08651 7 DIVEFLKDLIK-IPTVNPPGENYEEIAEFLRDTLEELGFSTEIIEV 51 (394)
T ss_pred HHHHHHHHHhc-CCccCCCCcCHHHHHHHHHHHHHHcCCeEEEEec
Confidence 34455666653 2211001145678999999999999999766554
No 120
>PRK05469 peptidase T; Provisional
Probab=72.02 E-value=12 Score=38.52 Aligned_cols=26 Identities=27% Similarity=0.375 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHcCCe-EEEEEE
Q psy9208 89 EALENSIDFMVKESKDFGLE-VWTENV 114 (446)
Q Consensus 89 ~g~~~a~~~i~~~l~~~Gl~-v~~q~f 114 (446)
+|+++.++||+++|+++|++ +..++.
T Consensus 29 ~~~~~~a~~l~~~l~~~G~~~~~~~~~ 55 (408)
T PRK05469 29 EGQWDLAKLLVEELKELGLQDVTLDEN 55 (408)
T ss_pred HHHHHHHHHHHHHHHHcCCCeEEECCC
Confidence 68899999999999999997 666554
No 121
>PRK12893 allantoate amidohydrolase; Reviewed
Probab=71.72 E-value=6.4 Score=40.52 Aligned_cols=31 Identities=16% Similarity=0.260 Sum_probs=27.7
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHcCCeEEEEE
Q psy9208 83 PRMTGSEALENSIDFMVKESKDFGLEVWTEN 113 (446)
Q Consensus 83 ~R~~GS~g~~~a~~~i~~~l~~~Gl~v~~q~ 113 (446)
+|.++|.++.++++||.++|++.|++++.+.
T Consensus 31 ~~~~~s~~e~~~~~~l~~~l~~~G~~~~~~~ 61 (412)
T PRK12893 31 TRLALTDEDREARDLLAQWMEEAGLTVSVDA 61 (412)
T ss_pred EeccCCHHHHHHHHHHHHHHHHcCCEEEEcC
Confidence 4889999999999999999999999977643
No 122
>PRK12890 allantoate amidohydrolase; Reviewed
Probab=69.97 E-value=8.3 Score=39.80 Aligned_cols=80 Identities=10% Similarity=0.070 Sum_probs=49.2
Q ss_pred ChhHHHHHHHHHHHhCCCCCccccCCCCCCCCchHhHHhCCCeEEEeeeCCCCCCCCCcCCCCCcCCCCHHHHHHHHHHH
Q psy9208 350 SPEAACILNKVLRLFKPINATRLVQSKYPVGSDIELFQEKNIPGVALLNDNAKYFWYHHTRADTMSVLDSDTLDLCTALW 429 (446)
Q Consensus 350 s~~l~~l~~~~~~~~~~~~~~~~~~~~~~~gSD~~~F~~~GIP~~~l~~~~~~y~~~yHt~~Dt~d~ld~~~l~~~~~~~ 429 (446)
++.+.+++.+..+.. +......+. ..++|...|.+.| |.+.++..... ...|++ =++++.+.+...++++
T Consensus 334 ~~~l~~~l~~~~~~~---g~~~~~~~~-~g~tDa~~~~~~g-p~~~~~gp~~~--~~aHs~---dE~v~i~~l~~~~~i~ 403 (414)
T PRK12890 334 DPALVDAVEAAAARL---GYPSRRMPS-GAGHDAAAIARIG-PSAMIFVPCRG--GISHNP---EEAMDPEDLAAGARVL 403 (414)
T ss_pred CHHHHHHHHHHHHHc---CCCceecCC-cccHHHHHHHhhC-CEEEEEecCCC--CCCCCc---CccCCHHHHHHHHHHH
Confidence 455666666666542 333221222 1358877777778 44433332221 234876 3789999999999999
Q ss_pred HHHHHHHhcC
Q psy9208 430 GGVAYILADL 439 (446)
Q Consensus 430 a~~~~~lA~~ 439 (446)
+.++..+++.
T Consensus 404 ~~ll~~l~~~ 413 (414)
T PRK12890 404 LDAVLRLDRQ 413 (414)
T ss_pred HHHHHHHhhc
Confidence 9999888653
No 123
>PRK12891 allantoate amidohydrolase; Reviewed
Probab=69.53 E-value=17 Score=37.54 Aligned_cols=80 Identities=10% Similarity=0.111 Sum_probs=51.8
Q ss_pred ChhHHHHHHHHHHHhCCCCCccccCCCCCCCCchHhHHhCCCeEEEeeeCCCCCCCCCcCCCCCcCCCCHHHHHHHHHHH
Q psy9208 350 SPEAACILNKVLRLFKPINATRLVQSKYPVGSDIELFQEKNIPGVALLNDNAKYFWYHHTRADTMSVLDSDTLDLCTALW 429 (446)
Q Consensus 350 s~~l~~l~~~~~~~~~~~~~~~~~~~~~~~gSD~~~F~~~GIP~~~l~~~~~~y~~~yHt~~Dt~d~ld~~~l~~~~~~~ 429 (446)
++.+.+.+.+..+. .|......+. ..++| ..|+..|||++.++..... ..-|++ -+.++.+.|...++++
T Consensus 332 d~~lv~~l~~a~~~---~G~~~~~~~~-~ggtD-a~~~~~giPt~~~~gp~~~--~~aH~~---dE~v~i~~l~~~~~il 401 (414)
T PRK12891 332 APGCIDAVRDAARA---LGLSHMDIVS-GAGHD-ACFAARGAPTGMIFVPCVD--GLSHNE---AEAITPEWFAAGADVL 401 (414)
T ss_pred CHHHHHHHHHHHHH---cCCCceecCC-cchHH-HHHHHhhCCEEEEEEcCCC--CCCCCc---cccCCHHHHHHHHHHH
Confidence 34555666665543 2443322222 13588 6677889999665543321 234775 3789999999999999
Q ss_pred HHHHHHHhcC
Q psy9208 430 GGVAYILADL 439 (446)
Q Consensus 430 a~~~~~lA~~ 439 (446)
+.++..+++.
T Consensus 402 ~~~l~~~~~~ 411 (414)
T PRK12891 402 LRAVLQSAQE 411 (414)
T ss_pred HHHHHHHhhh
Confidence 9999998864
No 124
>PRK13799 unknown domain/N-carbamoyl-L-amino acid hydrolase fusion protein; Provisional
Probab=68.93 E-value=9.3 Score=41.68 Aligned_cols=82 Identities=12% Similarity=0.094 Sum_probs=51.4
Q ss_pred ecChhHHHHHHHHHHHhCCCCCccccCCCCCCCCchHhHHhCCCeEEEeeeCCCCCCCCCcCCCCCcCCCCHHHHHHHHH
Q psy9208 348 KGSPEAACILNKVLRLFKPINATRLVQSKYPVGSDIELFQEKNIPGVALLNDNAKYFWYHHTRADTMSVLDSDTLDLCTA 427 (446)
Q Consensus 348 ~gs~~l~~l~~~~~~~~~~~~~~~~~~~~~~~gSD~~~F~~~GIP~~~l~~~~~~y~~~yHt~~Dt~d~ld~~~l~~~~~ 427 (446)
..++.+.+.+.+..+. .|......+. ..++|...|.+.++|++.+...... ..-|++ -+.++.+.+...++
T Consensus 509 ~~d~~lv~~~~~a~~~---~G~~~~~~~s-gag~Da~~~a~~~p~amif~~~g~~--g~sHsp---~E~v~~edL~~g~~ 579 (591)
T PRK13799 509 PCAPELMKQLEAATDA---AGVPLFELAS-GAGHDAMKIAEIMDQAMLFTRCGNA--GISHNP---LESMTADDMELSAD 579 (591)
T ss_pred CCCHHHHHHHHHHHHH---cCCCceecCc-chHHHHHHHHhhCCEEEEEEecCCC--CCCCCc---cccCCHHHHHHHHH
Confidence 3455566666666553 3444322222 1358887777887776554432221 123775 47789999999999
Q ss_pred HHHHHHHHHhc
Q psy9208 428 LWGGVAYILAD 438 (446)
Q Consensus 428 ~~a~~~~~lA~ 438 (446)
++..++..++.
T Consensus 580 vl~~~l~~l~~ 590 (591)
T PRK13799 580 AFLDFLNNFAE 590 (591)
T ss_pred HHHHHHHHHhh
Confidence 99999888764
No 125
>PRK09290 allantoate amidohydrolase; Reviewed
Probab=67.89 E-value=9.9 Score=39.24 Aligned_cols=44 Identities=18% Similarity=0.276 Sum_probs=35.1
Q ss_pred hHHHHHHHHHHccC-------CCCCCCHHHHHHHHHHHHHHHHcCCeEEEEE
Q psy9208 69 HTYSTLADFVDKFG-------PRMTGSEALENSIDFMVKESKDFGLEVWTEN 113 (446)
Q Consensus 69 ~~~~~l~~ls~~~g-------~R~~GS~g~~~a~~~i~~~l~~~Gl~v~~q~ 113 (446)
++++.+++|+. ++ .|.+.|.++.++++||.+.|+++|++++.++
T Consensus 8 ~~~~~~~~l~~-~~~~~~~g~~~~s~s~~e~~~a~~l~~~l~~~g~~~~~~~ 58 (413)
T PRK09290 8 RLWARLDELAK-IGATPDGGVTRLALSPEDLQARDLFAEWMEAAGLTVRVDA 58 (413)
T ss_pred HHHHHHHHHhc-ccCCCCCceeeccCCHHHHHHHHHHHHHHHHcCCEEEEcC
Confidence 55666676664 22 3789999999999999999999999987654
No 126
>PRK08554 peptidase; Reviewed
Probab=66.34 E-value=12 Score=39.04 Aligned_cols=26 Identities=12% Similarity=0.178 Sum_probs=21.4
Q ss_pred CHHHHHHHHHHHHHHHHcCCeEEEEE
Q psy9208 88 SEALENSIDFMVKESKDFGLEVWTEN 113 (446)
Q Consensus 88 S~g~~~a~~~i~~~l~~~Gl~v~~q~ 113 (446)
+.+..+.++|+.+.|+++|++++.++
T Consensus 23 ~~~~~~~~~~l~~~l~~~G~~~~~~~ 48 (438)
T PRK08554 23 IKPSKECPKFIKDTLESWGIESELIE 48 (438)
T ss_pred cchHHHHHHHHHHHHHHCCCeEEEEe
Confidence 35578999999999999999866554
No 127
>PRK02813 putative aminopeptidase 2; Provisional
Probab=64.07 E-value=25 Score=36.78 Aligned_cols=121 Identities=17% Similarity=0.150 Sum_probs=70.3
Q ss_pred eEEEeeCccccccc---cHHH-----HHHHhHh-------h---hcceEEEEEecCC-CCCcc---------------c-
Q psy9208 300 ISGILWTAEEQGYV---GAIA-----YVKKHQE-------E---LKNITVAMESDDG-TFTPF---------------G- 344 (446)
Q Consensus 300 ~lf~~~~aEE~Gl~---GS~~-----y~~~~~~-------~---~~~i~~~in~D~g-~~~~~---------------~- 344 (446)
.++++|+-||.|+. |+.- .+++... + .-+--++|.+|+. +..|. |
T Consensus 255 ~~~~~~d~EEVGs~~~~GA~s~~l~~~l~ri~~~~~~~~~~~~~~i~~s~~IS~DvahA~hPn~~~~~~~~~~~~lg~Gp 334 (428)
T PRK02813 255 NVLAAFDHEEVGSATKQGADSPFLEDVLERIVLALGGDREDFLRALARSFLISADMAHAVHPNYPEKHDPTHRPLLNKGP 334 (428)
T ss_pred EEEEEEecCccCCCCCcccCchhHHHHHHHHHHhhcCchHHHHHhhCCCeEEEEeccCCCCCCCCCccCcccCccCCcCC
Confidence 34899999999998 7763 1111110 0 0122357788873 22221 1
Q ss_pred -ee------eecChhHHHHHHHHHHHhCCCCCcccc---CCCCCCCCchHhHH--hCCCeEEEeeeCCCCCCCCCcCCCC
Q psy9208 345 -LS------LKGSPEAACILNKVLRLFKPINATRLV---QSKYPVGSDIELFQ--EKNIPGVALLNDNAKYFWYHHTRAD 412 (446)
Q Consensus 345 -~~------~~gs~~l~~l~~~~~~~~~~~~~~~~~---~~~~~~gSD~~~F~--~~GIP~~~l~~~~~~y~~~yHt~~D 412 (446)
+. ...++....+++++++. .+++... ......|||-.|+. +.|||++.+.-.- .+-|++.-
T Consensus 335 vIk~~~~~~y~t~~~~~a~~~~ia~~---~~Ip~Q~~v~~~d~~gGstig~i~~s~~Gi~tvdiGiP~----l~MHS~~E 407 (428)
T PRK02813 335 VIKINANQRYATDAESAAVFKLLCEK---AGVPYQEFVNRSDMPCGSTIGPITAARLGIRTVDVGAPM----LAMHSARE 407 (428)
T ss_pred eEEECCCCCcccCHHHHHHHHHHHHH---cCCCEEEEEecCCCCCccHHHHHHHhCCCCcEEEeChhh----cccccHHH
Confidence 21 12345667777777764 3554322 11111479999987 4799999987632 34599987
Q ss_pred CcCCCCHHHHHHHHH
Q psy9208 413 TMSVLDSDTLDLCTA 427 (446)
Q Consensus 413 t~d~ld~~~l~~~~~ 427 (446)
+...-|.+.+.+..+
T Consensus 408 ~~~~~D~~~~~~l~~ 422 (428)
T PRK02813 408 LAGVKDHAYLIKALT 422 (428)
T ss_pred HccHHHHHHHHHHHH
Confidence 777767666555443
No 128
>TIGR01882 peptidase-T peptidase T. This model represents a tripeptide aminopeptidase known as Peptidase T, which has a substrate preference for hydrophobic peptides.
Probab=62.98 E-value=16 Score=37.69 Aligned_cols=32 Identities=13% Similarity=0.205 Sum_probs=27.7
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHcCCe-EEEEE
Q psy9208 82 GPRMTGSEALENSIDFMVKESKDFGLE-VWTEN 113 (446)
Q Consensus 82 g~R~~GS~g~~~a~~~i~~~l~~~Gl~-v~~q~ 113 (446)
.+-...++++++.++||+++|+++|++ |+.++
T Consensus 23 ~~~~ps~~~~~~~a~~l~~~l~~lG~~~v~~d~ 55 (410)
T TIGR01882 23 SDTCPSTPGQLTFGNMLVDDLKSLGLQDAHYDE 55 (410)
T ss_pred CCCCCCCHhHHHHHHHHHHHHHHcCCceEEEcC
Confidence 356677889999999999999999997 88875
No 129
>TIGR03106 trio_M42_hydro hydrolase, peptidase M42 family. This model describes a subfamily of MEROPS peptidase family M42, a glutamyl aminopeptidase family that also includes the cellulase CelM from Clostridium thermocellum and deblocking aminopeptidases that can remove acylated amino acids. Members of this family occur in a three gene cassette with an amidotransferase (TIGR03104)in the asparagine synthase (glutamine-hydrolyzing) family, and a probable acetyltransferase (TIGR03103) in the GNAT family.
Probab=62.45 E-value=7.5 Score=39.35 Aligned_cols=37 Identities=19% Similarity=0.225 Sum_probs=26.2
Q ss_pred eeceEEEEEcCcCCCCcEEEEEecCCCCCCC-CCcccCC
Q psy9208 258 NTRNTIVQIRGRECPDKVVITSGHLDSWDVG-QGAMDDG 295 (446)
Q Consensus 258 ~s~NVia~i~G~~~~~~~Vvl~aH~Ds~~~g-~Ga~Dng 295 (446)
...|+||.++|. ...+.|++.||.|..++= ..+.|||
T Consensus 44 ~~Gnlia~~~g~-~~~~~v~l~aHmDevG~~V~~I~~~G 81 (343)
T TIGR03106 44 RRGAIRATLPGR-EATPARAVVTHLDTLGAMVRELKDNG 81 (343)
T ss_pred CCeEEEEEECCC-CCCCeEEEEEeeccccceeeEECCCC
Confidence 367999999884 234579999999998741 3445544
No 130
>TIGR01880 Ac-peptdase-euk N-acyl-L-amino-acid amidohydrolase. This model represents a family of eukaryotic N-acyl-L-amino-acid amidohydrolases active on fatty acid and acetyl amides of L-amino acids.
Probab=62.41 E-value=21 Score=36.48 Aligned_cols=42 Identities=14% Similarity=0.374 Sum_probs=27.3
Q ss_pred HHHHHHHHHHccCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEE
Q psy9208 70 TYSTLADFVDKFGPRMTGSEALENSIDFMVKESKDFGLEVWTEN 113 (446)
Q Consensus 70 ~~~~l~~ls~~~g~R~~GS~g~~~a~~~i~~~l~~~Gl~v~~q~ 113 (446)
..+.|++|.+ +... .+..++.++++||.+.|+++|+++...+
T Consensus 11 ~~~~l~~lv~-ipS~-~~~~~~~~~~~~l~~~l~~~G~~~~~~~ 52 (400)
T TIGR01880 11 AVTRFREYLR-INTV-QPNPDYAACVDFLIKQADELGLARKTIE 52 (400)
T ss_pred HHHHHHHHhc-cCcc-CCCccHHHHHHHHHHHHHhCCCceeEEE
Confidence 4455666653 1221 2333467899999999999999865443
No 131
>PRK08652 acetylornithine deacetylase; Provisional
Probab=60.68 E-value=39 Score=33.57 Aligned_cols=78 Identities=14% Similarity=0.101 Sum_probs=52.0
Q ss_pred ChhHHHHHHHHHHHhCCCCCccccCCCCCCCCchHhHHhCCCeEEEeeeCCCCCCCCCcCCCCCcCCCCHHHHHHHHHHH
Q psy9208 350 SPEAACILNKVLRLFKPINATRLVQSKYPVGSDIELFQEKNIPGVALLNDNAKYFWYHHTRADTMSVLDSDTLDLCTALW 429 (446)
Q Consensus 350 s~~l~~l~~~~~~~~~~~~~~~~~~~~~~~gSD~~~F~~~GIP~~~l~~~~~~y~~~yHt~~Dt~d~ld~~~l~~~~~~~ 429 (446)
++.+.+++.+..+.+ |.+...... ..++|-..|.+.|||++.+..+.. ...|++ =++++.+.+.+.++++
T Consensus 268 ~~~lv~~l~~a~~~~---g~~~~~~~~-~g~tDa~~~~~~gip~v~~Gpg~~---~~~H~~---nE~i~i~~l~~~~~~l 337 (347)
T PRK08652 268 DEEIVQLLEKAMKEV---GLEPEFTVM-RSWTDAINFRYNGTKTVVWGPGEL---DLCHTK---FERIDVREVEKAKEFL 337 (347)
T ss_pred CCHHHHHHHHHHHHh---CCCCCcCcC-CccchhHHHHHCCCCEEEECCCch---hhcCCC---CceeeHHHHHHHHHHH
Confidence 345666666666543 333221111 145899888899999987654421 245876 4789999999999999
Q ss_pred HHHHHHHh
Q psy9208 430 GGVAYILA 437 (446)
Q Consensus 430 a~~~~~lA 437 (446)
..++..+-
T Consensus 338 ~~~~~~~~ 345 (347)
T PRK08652 338 KALNEILL 345 (347)
T ss_pred HHHHHHHh
Confidence 98887664
No 132
>KOG2194|consensus
Probab=59.24 E-value=22 Score=39.98 Aligned_cols=36 Identities=25% Similarity=0.442 Sum_probs=31.6
Q ss_pred hHHHHHHHHHHccCCCCCCCHHHH-HHHHHHHHHHHHc
Q psy9208 69 HTYSTLADFVDKFGPRMTGSEALE-NSIDFMVKESKDF 105 (446)
Q Consensus 69 ~~~~~l~~ls~~~g~R~~GS~g~~-~a~~~i~~~l~~~ 105 (446)
+++.++.++++ +|+|..||..++ .+.+|+.+++.+.
T Consensus 58 rA~~~l~~ls~-~G~~~~gS~~ne~~a~~~il~e~~~i 94 (834)
T KOG2194|consen 58 RALKDLLSLSA-AGPHPVGSDNNEMHASSFILKEVNKI 94 (834)
T ss_pred HHHHHHHHHHh-cCCcccCchhhHHHHHHHHHHHHHHH
Confidence 67788888886 699999999999 9999999998874
No 133
>COG0527 LysC Aspartokinases [Amino acid transport and metabolism]
Probab=59.12 E-value=40 Score=35.46 Aligned_cols=121 Identities=16% Similarity=0.084 Sum_probs=69.8
Q ss_pred CHHHHHHHHHHHHHHHHcCCe-EEEEEEEeceeee---cccEEEEeCCCC--------ceeeEEecCCCCCCCCCCceee
Q psy9208 88 SEALENSIDFMVKESKDFGLE-VWTENVTAPKWER---HFEKVTLVKPWK--------SDIPVSTLGGSVGTPQGGITAE 155 (446)
Q Consensus 88 S~g~~~a~~~i~~~l~~~Gl~-v~~q~f~~~~w~~---~~~~l~~~~~~~--------~~~~~~~l~~s~~t~~~gi~a~ 155 (446)
|-|+..++..+...|++.|++ .+..+.++..-.. +++.+....... ..+.+ .-||-+.+
T Consensus 116 S~GE~~Sa~lla~~L~~~Gv~A~~~~~~~~~i~t~~~~~~a~i~~~~~~~~l~~~~~~~~v~V-v~GF~G~~-------- 186 (447)
T COG0527 116 SLGERLSAALLAAALNALGVDARSLDGRQAGIATDSNHGNARILDEDSERRLLRLLEEGKVPV-VAGFQGIN-------- 186 (447)
T ss_pred hhchHHHHHHHHHHHHhCCCceEEEchHHceeeecCcccccccchhhhhhhHHHHhcCCcEEE-ecCceeec--------
Confidence 578899999999999999999 6666553321111 122211111000 01111 11111111
Q ss_pred ccccEEEEecCCcCcchhhhhhhhhHHHHHHcCcEEEEEeccCCCCCCCCCCccccCCCCCCCCC----EeEcCHHHHHH
Q psy9208 156 VAGKIVVFNQDFVSYGETVKYRSKGASVASKYGAVATLIRSVTPYSLATPHTGHQSYDAAVKPIP----TACIAPEYAEM 231 (446)
Q Consensus 156 v~GkIvlv~~~~~~yg~~~~~~~~~~~~A~~~GA~avii~~~~~~~~~~p~~g~~~~~~~~~~iP----~~~Is~~~~~~ 231 (446)
-.|.++.+-||...|. . +..|+..||.-+-||.+.++-... .|.-+| .=.||++++..
T Consensus 187 ~~G~~tTLGRGGSD~S-------A-~~laa~l~Ad~~~I~TDVdGI~Ta----------DPRiVp~Ar~i~~isyeEa~E 248 (447)
T COG0527 187 EDGETTTLGRGGSDYS-------A-AALAAALGADEVEIWTDVDGVYTA----------DPRIVPDARLLPEISYEEALE 248 (447)
T ss_pred CCCCEEEeCCCcHHHH-------H-HHHHHHcCCCEEEEEECCCCCccC----------CCCCCCcceEcCccCHHHHHH
Confidence 2478888887743332 2 688999999999999998764221 122233 23578999888
Q ss_pred HHHH
Q psy9208 232 LYRM 235 (446)
Q Consensus 232 L~~~ 235 (446)
|...
T Consensus 249 LA~~ 252 (447)
T COG0527 249 LAYL 252 (447)
T ss_pred HHHC
Confidence 8764
No 134
>TIGR01883 PepT-like peptidase T-like protein. This model represents a clade of enzymes closely related to Peptidase T, an aminotripeptidase found in bacteria. This clade consists of gram positive bacteria of which several additionally contain a Peptidase T gene.
Probab=58.93 E-value=19 Score=36.12 Aligned_cols=72 Identities=22% Similarity=0.195 Sum_probs=47.0
Q ss_pred hhHHHHHHHHHHHhCCCCCccccCCCCCCCCchHhHHhCCCeEEEeeeCCCCCCCCCcCCCCCcCCCCHHHHHHHHHHHH
Q psy9208 351 PEAACILNKVLRLFKPINATRLVQSKYPVGSDIELFQEKNIPGVALLNDNAKYFWYHHTRADTMSVLDSDTLDLCTALWG 430 (446)
Q Consensus 351 ~~l~~l~~~~~~~~~~~~~~~~~~~~~~~gSD~~~F~~~GIP~~~l~~~~~~y~~~yHt~~Dt~d~ld~~~l~~~~~~~a 430 (446)
..+.+++.+..+. .+......+. ..++|...|.+.|||++.+..+.. ..|++. ++++.+.+...++++.
T Consensus 289 ~~lv~~l~~a~~~---~g~~~~~~~~-~g~tD~~~~~~~giP~v~~G~g~~----~~Hs~~---E~v~i~~~~~~~~~~~ 357 (361)
T TIGR01883 289 HPLMNIFKKAAKK---IGLKTSEIFS-GGGSDANVLNEKGVPTVNLSAGYV----HAHTEK---ETISIEQLVKLAELVI 357 (361)
T ss_pred CHHHHHHHHHHHH---cCCCcEEEec-CcccHHHHHhhCCCceEEECCCcc----cCcCcc---eeEEHHHHHHHHHHHH
Confidence 3455666665553 2433222222 135888777788999998876542 458853 8899999999998776
Q ss_pred HHH
Q psy9208 431 GVA 433 (446)
Q Consensus 431 ~~~ 433 (446)
.++
T Consensus 358 ~~~ 360 (361)
T TIGR01883 358 ALA 360 (361)
T ss_pred HHh
Confidence 653
No 135
>PRK13009 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=58.68 E-value=44 Score=33.69 Aligned_cols=40 Identities=10% Similarity=0.160 Sum_probs=28.8
Q ss_pred HHHHHHHHHHccCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEE
Q psy9208 70 TYSTLADFVDKFGPRMTGSEALENSIDFMVKESKDFGLEVWTEN 113 (446)
Q Consensus 70 ~~~~l~~ls~~~g~R~~GS~g~~~a~~~i~~~l~~~Gl~v~~q~ 113 (446)
..+.+++|.. +.+-|+.+..+++||.+.|++.|++++.++
T Consensus 4 ~~~~l~~Lv~----ips~s~~e~~~~~~l~~~l~~~G~~~~~~~ 43 (375)
T PRK13009 4 VLELAQDLIR----RPSVTPDDAGCQDLLAERLEALGFTCERMD 43 (375)
T ss_pred HHHHHHHHhC----CCCCCCchhhHHHHHHHHHHHcCCeEEEec
Confidence 3455555553 344456778899999999999999976554
No 136
>PRK12892 allantoate amidohydrolase; Reviewed
Probab=57.38 E-value=21 Score=36.74 Aligned_cols=78 Identities=13% Similarity=0.056 Sum_probs=46.3
Q ss_pred hhHHHHHHHHHHHhCCCCCccccCCCCCCCCchHhHHhCCCeEEEeeeCCCCCCCCCcCCCCCcCCCCHHHHHHHHHHHH
Q psy9208 351 PEAACILNKVLRLFKPINATRLVQSKYPVGSDIELFQEKNIPGVALLNDNAKYFWYHHTRADTMSVLDSDTLDLCTALWG 430 (446)
Q Consensus 351 ~~l~~l~~~~~~~~~~~~~~~~~~~~~~~gSD~~~F~~~GIP~~~l~~~~~~y~~~yHt~~Dt~d~ld~~~l~~~~~~~a 430 (446)
..+.+.+.+..+. .+......+. ..++|...|.+. ||++.++..... ..-|++ =+.++.+.+...+++++
T Consensus 334 ~~lv~~~~~a~~~---~g~~~~~~~~-~g~tDa~~~~~~-ip~~~~~gp~~~--~~~H~~---~E~v~i~~l~~~~~il~ 403 (412)
T PRK12892 334 AALVDALRAAAEA---AGGPYLEMPS-GAGHDAQNMARI-APSAMLFVPSKG--GISHNP---AEDTSPADLAQGARVLA 403 (412)
T ss_pred HHHHHHHHHHHHH---cCCCccccCc-chHHHHHHHHhH-CCEEEEEeccCC--CCCCCC---CCCCCHHHHHHHHHHHH
Confidence 4455555555553 3333222222 134787556555 997654443221 224775 35778999999999999
Q ss_pred HHHHHHhc
Q psy9208 431 GVAYILAD 438 (446)
Q Consensus 431 ~~~~~lA~ 438 (446)
.++..+.+
T Consensus 404 ~~l~~~~~ 411 (412)
T PRK12892 404 DTLRRLAR 411 (412)
T ss_pred HHHHHhcc
Confidence 98887654
No 137
>PRK07473 carboxypeptidase; Provisional
Probab=55.82 E-value=29 Score=35.38 Aligned_cols=74 Identities=20% Similarity=0.096 Sum_probs=47.4
Q ss_pred hHHHHHHHHHHHhCCCCCccccCCCCCCCCchHhHHhCCCeEEE-eeeCCCCCCCCCcCCCCCcCCCCHHHHHHHHHHHH
Q psy9208 352 EAACILNKVLRLFKPINATRLVQSKYPVGSDIELFQEKNIPGVA-LLNDNAKYFWYHHTRADTMSVLDSDTLDLCTALWG 430 (446)
Q Consensus 352 ~l~~l~~~~~~~~~~~~~~~~~~~~~~~gSD~~~F~~~GIP~~~-l~~~~~~y~~~yHt~~Dt~d~ld~~~l~~~~~~~a 430 (446)
.+.+++++..+. .+.+...... ..++|-..|...|||++. +..++. ..|++. ++++.+.+...+++++
T Consensus 301 ~l~~~~~~~~~~---~g~~~~~~~~-~g~tDa~~~~~~giP~v~g~Gpg~~----~~H~~d---E~v~i~~l~~~~~vl~ 369 (376)
T PRK07473 301 ALYEKARAIAGQ---LGLSLPHGSA-GGGSDGNFTGAMGIPTLDGLGVRGA----DYHTLN---EHIEVDSLAERGRLMA 369 (376)
T ss_pred HHHHHHHHHHHH---cCCCCccccC-ccccHhhhHHhcCCCEEEeccCCCC----CCCCCC---ceEecccHHHHHHHHH
Confidence 355555555443 3433222222 145997666678999996 655432 238753 7899999999999999
Q ss_pred HHHHHH
Q psy9208 431 GVAYIL 436 (446)
Q Consensus 431 ~~~~~l 436 (446)
.+++.|
T Consensus 370 ~~l~~~ 375 (376)
T PRK07473 370 GLLATL 375 (376)
T ss_pred HHHHhc
Confidence 888654
No 138
>PRK06915 acetylornithine deacetylase; Validated
Probab=55.47 E-value=49 Score=34.08 Aligned_cols=81 Identities=10% Similarity=0.156 Sum_probs=51.7
Q ss_pred ChhHHHHHHHHHHHhCCCCCccccCCCCCCCCchHhHHhC-CCeEEEeeeCCCCCCCCCcCCCCCcCCCCHHHHHHHHHH
Q psy9208 350 SPEAACILNKVLRLFKPINATRLVQSKYPVGSDIELFQEK-NIPGVALLNDNAKYFWYHHTRADTMSVLDSDTLDLCTAL 428 (446)
Q Consensus 350 s~~l~~l~~~~~~~~~~~~~~~~~~~~~~~gSD~~~F~~~-GIP~~~l~~~~~~y~~~yHt~~Dt~d~ld~~~l~~~~~~ 428 (446)
+..+.+.+.+.++.+. |........ ..++|...|.+. |||++.+..+.. ..-|++. ++++.+.+...+++
T Consensus 339 d~~lv~~l~~a~~~~~--G~~~~~~~~-~g~tD~~~~~~~~giP~v~fGpg~~---~~aH~~d---E~v~~~~l~~~~~~ 409 (422)
T PRK06915 339 NHPLMTTLEHNFVEIE--GNKPIIEAS-PWGTDGGLLTQIAGVPTIVFGPGET---KVAHYPN---EYIEVDKMIAAAKI 409 (422)
T ss_pred CCHHHHHHHHHHHHHh--CCCCeecee-eeeccHHHHhccCCCCEEEECCCCc---cccCCCC---ceeEHHHHHHHHHH
Confidence 3345566666665432 333222222 135897767776 999976554321 2347753 67899999999999
Q ss_pred HHHHHHHHhcC
Q psy9208 429 WGGVAYILADL 439 (446)
Q Consensus 429 ~a~~~~~lA~~ 439 (446)
++.+++.+...
T Consensus 410 ~~~ll~~~~~~ 420 (422)
T PRK06915 410 IALTLLDWCEV 420 (422)
T ss_pred HHHHHHHHhCC
Confidence 99999887643
No 139
>TIGR01246 dapE_proteo succinyl-diaminopimelate desuccinylase, proteobacterial clade. This model describes a proteobacterial subset of succinyl-diaminopimelate desuccinylases. An experimentally confirmed Gram-positive lineage succinyl-diaminopimelate desuccinylase has been described for Corynebacterium glutamicum, and a neighbor-joining tree shows the seed members, SP:Q59284, and putative archaeal members such as TrEMBL:O58003 in a single clade. However, the archaeal members differ substantially, share a number of motifs with acetylornithine deacetylases rather than succinyl-diaminopimelate desuccinylases, and are not taken as trusted examples of succinyl-diaminopimelate desuccinylases. This model is limited to proteobacterial members for this reason.
Probab=54.61 E-value=47 Score=33.49 Aligned_cols=30 Identities=10% Similarity=0.107 Sum_probs=23.6
Q ss_pred CCCCHHHHHHHHHHHHHHHHcCCeEEEEEE
Q psy9208 85 MTGSEALENSIDFMVKESKDFGLEVWTENV 114 (446)
Q Consensus 85 ~~GS~g~~~a~~~i~~~l~~~Gl~v~~q~f 114 (446)
-+-|+.+..+++||.++|+++|++++.+++
T Consensus 12 ps~s~~e~~~~~~i~~~l~~~G~~~~~~~~ 41 (370)
T TIGR01246 12 PSVTPNDAGCQDIIAERLEKLGFEIEWMHF 41 (370)
T ss_pred CCCCcchHHHHHHHHHHHHHCCCEEEEEec
Confidence 344556788999999999999999766543
No 140
>PRK09961 exoaminopeptidase; Provisional
Probab=54.22 E-value=10 Score=38.45 Aligned_cols=36 Identities=11% Similarity=0.268 Sum_probs=26.0
Q ss_pred eeceEEEEEcCcCCCCcEEEEEecCCCCCCC-CCcccCC
Q psy9208 258 NTRNTIVQIRGRECPDKVVITSGHLDSWDVG-QGAMDDG 295 (446)
Q Consensus 258 ~s~NVia~i~G~~~~~~~Vvl~aH~Ds~~~g-~Ga~Dng 295 (446)
...|||+.++|. ..+.|++.||+|.++.= ..++|||
T Consensus 41 ~~Gnvi~~~~g~--~~~~v~l~aHmDevg~~V~~I~~~G 77 (344)
T PRK09961 41 GLGSVLIRLNES--TGPKVMICAHMDEVGFMVRSISREG 77 (344)
T ss_pred CCCCEEEEEcCC--CCCEEEEEeccceeceEEEEECCCc
Confidence 457999988774 23489999999998731 3556664
No 141
>TIGR03107 glu_aminopep glutamyl aminopeptidase. This model represents the M42.001 clade within MEROPS family M42. M42 includes glutamyl aminopeptidase as in the present model, deblocking aminopeptidases as from Pyrococcus horikoshii and related species, and endo-1,4-beta-glucanase (cellulase M) as from Clostridium thermocellum. The current family includes
Probab=52.41 E-value=11 Score=38.32 Aligned_cols=38 Identities=13% Similarity=0.073 Sum_probs=26.1
Q ss_pred eeceEEEEEcCcCCCCcEEEEEecCCCCCCC-CCcccCC
Q psy9208 258 NTRNTIVQIRGRECPDKVVITSGHLDSWDVG-QGAMDDG 295 (446)
Q Consensus 258 ~s~NVia~i~G~~~~~~~Vvl~aH~Ds~~~g-~Ga~Dng 295 (446)
...||||..+|.......|++.||+|.+++= ..++|||
T Consensus 39 ~~GNvia~~~g~~~~~~~vml~AHmDeVGf~V~~I~~~G 77 (350)
T TIGR03107 39 GLGGIFGIKESQVENAPRVMVAAHMDEVGFMVSQIKPDG 77 (350)
T ss_pred CCCCEEEEecCCCCCCCEEEEEecccEeCEEEEEECCCc
Confidence 3479999987731123489999999998741 3455664
No 142
>PRK09133 hypothetical protein; Provisional
Probab=52.30 E-value=45 Score=35.03 Aligned_cols=56 Identities=11% Similarity=0.018 Sum_probs=40.0
Q ss_pred CCCchHhHHhCCCeEEEee--eCCCCCCCCCcCCCCCcCCCCHHHHHHHHHHHHHHHHHHhc
Q psy9208 379 VGSDIELFQEKNIPGVALL--NDNAKYFWYHHTRADTMSVLDSDTLDLCTALWGGVAYILAD 438 (446)
Q Consensus 379 ~gSD~~~F~~~GIP~~~l~--~~~~~y~~~yHt~~Dt~d~ld~~~l~~~~~~~a~~~~~lA~ 438 (446)
.++|...|...|||++.+. .++.. ...-|++ =++++.+.+...++++..++..++.
T Consensus 413 ggtDa~~~~~~gip~~~~~~i~gp~~-~~~aH~~---dE~v~i~~l~~~~~~l~~~l~~l~~ 470 (472)
T PRK09133 413 GATDGRYLRAAGIPTYGVSGLFGDPD-DTFAHGL---NERIPVASFYEGRDFLYELVKDLAG 470 (472)
T ss_pred cccchHHHHhcCCCceeecCcccCcc-cccCCCC---CCceeHHHHHHHHHHHHHHHHHhhc
Confidence 3589766667899998642 22111 1234774 4789999999999999999988865
No 143
>PRK08596 acetylornithine deacetylase; Validated
Probab=51.28 E-value=55 Score=33.80 Aligned_cols=56 Identities=18% Similarity=0.099 Sum_probs=44.0
Q ss_pred CCCchHhHHhCCCeEEEeeeCCCCCCCCCcCCCCCcCCCCHHHHHHHHHHHHHHHHHHhcCC
Q psy9208 379 VGSDIELFQEKNIPGVALLNDNAKYFWYHHTRADTMSVLDSDTLDLCTALWGGVAYILADLS 440 (446)
Q Consensus 379 ~gSD~~~F~~~GIP~~~l~~~~~~y~~~yHt~~Dt~d~ld~~~l~~~~~~~a~~~~~lA~~~ 440 (446)
.++|...|...|||++.+..+.. ...|++. ++++.+.+...+++++.+++.+...+
T Consensus 364 g~tD~~~~~~~gip~v~~Gpg~~---~~~H~~~---E~v~i~~~~~~~~~~~~~l~~~~~~~ 419 (421)
T PRK08596 364 TVTDGGWFAEFGIPAVIYGPGTL---EEAHSVN---EKVEIEQLIEYTKVITAFIYEWCHTK 419 (421)
T ss_pred eecchhhhhhcCCCEEEECCCcc---cccCCCC---ceEEHHHHHHHHHHHHHHHHHHhCCC
Confidence 45899888889999986655431 2458853 88999999999999999998887654
No 144
>COG2195 PepD Di- and tripeptidases [Amino acid transport and metabolism]
Probab=51.03 E-value=1.1e+02 Score=31.82 Aligned_cols=82 Identities=11% Similarity=0.110 Sum_probs=55.7
Q ss_pred eeecChhHHHHHHHHHHHhCCCCCccccCCCCCCCCchHhHHhCCCeEEEeeeCCCCCCCCCcCCCCCcCCCCHHHHHHH
Q psy9208 346 SLKGSPEAACILNKVLRLFKPINATRLVQSKYPVGSDIELFQEKNIPGVALLNDNAKYFWYHHTRADTMSVLDSDTLDLC 425 (446)
Q Consensus 346 ~~~gs~~l~~l~~~~~~~~~~~~~~~~~~~~~~~gSD~~~F~~~GIP~~~l~~~~~~y~~~yHt~~Dt~d~ld~~~l~~~ 425 (446)
.+.-.+.+.++.++.++.+ +......+. ..|+|-..+...|+|+..++.++ . .+.|++ .++++-+.+++.
T Consensus 331 ~~~~~~~iv~~a~~a~~~l---~~~p~v~~i-~gGtd~~~is~~g~p~~~i~~Gp-~--~n~Hs~---~E~v~I~s~ek~ 400 (414)
T COG2195 331 KIKPDSPLVDLAKKAYKEL---GIKPKVKPI-HGGTDGGVLSFKGLPTPNISTGP-G--ENPHSP---DEFVSIESMEKA 400 (414)
T ss_pred CCCCCchHHHHHHHHHHHh---CCCceEEEe-ecccchhhhhccCCCCceEeccc-c--cCCCCc---cceeehHHHHHH
Confidence 3344455777787777654 332222222 15799988889999999999985 3 356986 678888888888
Q ss_pred HHHHHHHHHHHh
Q psy9208 426 TALWGGVAYILA 437 (446)
Q Consensus 426 ~~~~a~~~~~lA 437 (446)
.+++..++-.++
T Consensus 401 ~~~l~~l~~~~~ 412 (414)
T COG2195 401 VQVLVELLKLAA 412 (414)
T ss_pred HHHHHHHHHHhh
Confidence 877776665544
No 145
>TIGR01879 hydantase amidase, hydantoinase/carbamoylase family. Enzymes in this subfamily hydrolize the amide bonds of compounds containing carbamoyl groups or hydantoin rings. These enzymes are members of the broader family of amidases represented by pfam01546.
Probab=50.94 E-value=49 Score=33.96 Aligned_cols=77 Identities=14% Similarity=0.081 Sum_probs=48.1
Q ss_pred ChhHHHHHHHHHHHhCCCCCccccCCCCCCCCchHhHHhCCCeEEEeeeCCCCCCCCCcCCCCCcCCCCHHHHHHHHHHH
Q psy9208 350 SPEAACILNKVLRLFKPINATRLVQSKYPVGSDIELFQEKNIPGVALLNDNAKYFWYHHTRADTMSVLDSDTLDLCTALW 429 (446)
Q Consensus 350 s~~l~~l~~~~~~~~~~~~~~~~~~~~~~~gSD~~~F~~~GIP~~~l~~~~~~y~~~yHt~~Dt~d~ld~~~l~~~~~~~ 429 (446)
+..+.+.+.+..+.+ +......+. ..++|...|...|+|++.+..+.. ..-|++. ++++.+.+...++++
T Consensus 325 d~~lv~~l~~a~~~~---g~~~~~~~~-~ggtDa~~~~~~~~~~v~fgPg~~---~~aH~~d---E~v~~e~l~~~~~vl 394 (401)
T TIGR01879 325 SEELVAALTELCERL---GYNARVMVS-GAGHDAQILAPIVPIGMIFIPSIN---GISHNPA---EWSNITDCAEGAKVL 394 (401)
T ss_pred CHHHHHHHHHHHHHc---CCCcccccc-chHHHHHHHHhhCCEEEEEecCCC---CCcCCCC---ccCCHHHHHHHHHHH
Confidence 344555555555432 333222222 134898888888888775544432 2347764 788999999999999
Q ss_pred HHHHHHH
Q psy9208 430 GGVAYIL 436 (446)
Q Consensus 430 a~~~~~l 436 (446)
+.+++.|
T Consensus 395 ~~~i~~l 401 (401)
T TIGR01879 395 YLMVYQL 401 (401)
T ss_pred HHHHHhC
Confidence 8887653
No 146
>cd04245 AAK_AKiii-YclM-BS AAK_AKiii-YclM-BS: Amino Acid Kinase Superfamily (AAK), AKiii-YclM-BS; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. In Bacillus subtilis (BS), YclM is reported to be a single polypeptide of 50 kD. The Bacillus subtilis 168 AKIII is induced by lysine and repressed by threonine, and it is synergistically inhibited by lysine and threonine.
Probab=50.18 E-value=49 Score=32.64 Aligned_cols=125 Identities=12% Similarity=-0.015 Sum_probs=66.7
Q ss_pred CHHHHHHHHHHHHHHHHcCCe-EEEEEEEeceeee-cccEEEEeCCCCce-------eeEEecCCCCCCCCCCceeeccc
Q psy9208 88 SEALENSIDFMVKESKDFGLE-VWTENVTAPKWER-HFEKVTLVKPWKSD-------IPVSTLGGSVGTPQGGITAEVAG 158 (446)
Q Consensus 88 S~g~~~a~~~i~~~l~~~Gl~-v~~q~f~~~~w~~-~~~~l~~~~~~~~~-------~~~~~l~~s~~t~~~gi~a~v~G 158 (446)
|-|+..++..+...|++.|++ .+....++..-.. ......+.....+. -.+...+ +.+-.+..|
T Consensus 117 s~GE~lSa~ll~~~L~~~Gi~a~~ld~~~~~i~t~~~~~~a~~~~~~~~~~~~~~~~~~v~Vv~-------Gf~g~~~~G 189 (288)
T cd04245 117 ARGEYLNAQLMAAYLNYQGIDARYVIPKDAGLVVTDEPGNAQILPESYQKIKKLRDSDEKLVIP-------GFYGYSKNG 189 (288)
T ss_pred HHhHHHHHHHHHHHHHHCCCCeEEEcHHHCceeecCCccccccchhhHHHHHHHHhCCCEEEEe-------CccccCCCC
Confidence 568888999999999999998 5555433211001 00001110000000 0011111 111113458
Q ss_pred cEEEEecCCcCcchhhhhhhhhHHHHHHcCcEEEEEeccCCCCCC-CCCCccccCCCCCCCCCEeEcCHHHHHHHHH
Q psy9208 159 KIVVFNQDFVSYGETVKYRSKGASVASKYGAVATLIRSVTPYSLA-TPHTGHQSYDAAVKPIPTACIAPEYAEMLYR 234 (446)
Q Consensus 159 kIvlv~~~~~~yg~~~~~~~~~~~~A~~~GA~avii~~~~~~~~~-~p~~g~~~~~~~~~~iP~~~Is~~~~~~L~~ 234 (446)
++..+.|+...|. . +..|...+|..+.++.+.++-.. .|.. .+..-+.-.||++++..|..
T Consensus 190 ~~ttLgRggSD~t-------A-al~A~~l~A~~v~i~tdVdGvytaDPr~-------v~~A~~i~~lsy~EA~ela~ 251 (288)
T cd04245 190 DIKTFSRGGSDIT-------G-AILARGFQADLYENFTDVDGIYAANPRI-------VANPKPISEMTYREMRELSY 251 (288)
T ss_pred CEEEcCCCchHHH-------H-HHHHHHcCCCEEEEEeCCCceECCCCCC-------CCCCeEeCccCHHHHHHHHH
Confidence 8888877743332 2 67888999999999988765321 1111 01122344689999988753
No 147
>PRK13983 diaminopimelate aminotransferase; Provisional
Probab=47.44 E-value=62 Score=32.81 Aligned_cols=49 Identities=12% Similarity=0.071 Sum_probs=36.4
Q ss_pred CCCchHhHHhCCCeEEEeeeCCCCCCCCCcCCCCCcCCCCHHHHHHHHHHHHHHHH
Q psy9208 379 VGSDIELFQEKNIPGVALLNDNAKYFWYHHTRADTMSVLDSDTLDLCTALWGGVAY 434 (446)
Q Consensus 379 ~gSD~~~F~~~GIP~~~l~~~~~~y~~~yHt~~Dt~d~ld~~~l~~~~~~~a~~~~ 434 (446)
.++|..-|...|||++.+..++ ...|++. ++++.+.+.+.+++++.++.
T Consensus 350 g~td~~~~~~~gip~v~~Gp~~----~~~H~~n---E~v~i~~l~~~~~~~~~~~~ 398 (400)
T PRK13983 350 GGTVAAFLRKKGYPAVVWSTLD----ETAHQPN---EYAKISNLIEDAKVFALLLL 398 (400)
T ss_pred CcHHHHHHHHcCCCEEEeCCcc----ccCCCCC---ceeeHHHHHHHHHHHHHHHh
Confidence 3477766667899999874332 2458863 88999999999998887765
No 148
>TIGR01902 dapE-lys-deAc N-acetyl-ornithine/N-acetyl-lysine deacetylase. This clade of mainly archaeal and related bacterial species contains two characterized enzymes, an deacetylase with specificity for both N-acetyl-ornithine and N-acetyl-lysine from Thermus which is found within a lysine biosynthesis operon, and a fusion protein with acetyl-glutamate kinase (an enzyme of ornithine biosynthesis) from Lactobacillus. It is possible that all of the sequences within this clade have dual specificity, or that a mix of specificities have evolved within this clade.
Probab=46.86 E-value=41 Score=33.42 Aligned_cols=54 Identities=15% Similarity=0.028 Sum_probs=41.3
Q ss_pred CCCchHhHHhC-CCeEEEeeeCCCCCCCCCcCCCCCcCCCCHHHHHHHHHHHHHHHHHHhc
Q psy9208 379 VGSDIELFQEK-NIPGVALLNDNAKYFWYHHTRADTMSVLDSDTLDLCTALWGGVAYILAD 438 (446)
Q Consensus 379 ~gSD~~~F~~~-GIP~~~l~~~~~~y~~~yHt~~Dt~d~ld~~~l~~~~~~~a~~~~~lA~ 438 (446)
.++|...|.+. |+|++.+..+.. ..-|++. ++++.+.+.+.++++..++..+++
T Consensus 281 g~tD~~~~~~~~g~p~v~~Gpg~~---~~aH~~n---E~v~i~~l~~~~~~~~~~l~~l~~ 335 (336)
T TIGR01902 281 GTSDMNILAPIWTVPMVAYGPGDS---TLDHTPQ---EKISLAEYLIGIKTLMLAIEELWQ 335 (336)
T ss_pred ccCccceeccccCCCeEEECCCCc---ccCCCCc---ceeEHHHHHHHHHHHHHHHHHHhc
Confidence 34898777665 999997655432 2238764 789999999999999999988875
No 149
>KOG2276|consensus
Probab=43.33 E-value=39 Score=34.80 Aligned_cols=71 Identities=30% Similarity=0.433 Sum_probs=49.1
Q ss_pred EcCcCCCCcEEEEEecCCCCCC---------------------CCCcccCCCceeeE-------------------EEee
Q psy9208 266 IRGRECPDKVVITSGHLDSWDV---------------------GQGAMDDGGGAFIS-------------------GILW 305 (446)
Q Consensus 266 i~G~~~~~~~Vvl~aH~Ds~~~---------------------g~Ga~DngsG~a~l-------------------f~~~ 305 (446)
..|++...+.|++.+|+|=.+. |-|+.||-.-++.. ||+-
T Consensus 84 ~~Gsdp~KktvlvYgHlDVqpA~~~DgW~TdPF~Lt~~~GkL~GRG~TDdkGPv~~wi~av~a~~~~g~~lpvnv~f~~E 163 (473)
T KOG2276|consen 84 VLGSDPSKKTVLVYGHLDVQPANLEDGWNTDPFTLTEDDGKLFGRGATDDKGPVLSWIHAVKALQQLGIDLPVNVVFVFE 163 (473)
T ss_pred cccCCCCcceEEEEeeeeeeecCCCCCCcCCCeEEEEECCEEeccCcCCCCccchHHHHHHHHHHHhCccccceEEEEEE
Confidence 3487444578999999986553 57999997766544 9999
Q ss_pred CccccccccHHHHHHHhHhh-hcceEEEEEec
Q psy9208 306 TAEEQGYVGAIAYVKKHQEE-LKNITVAMESD 336 (446)
Q Consensus 306 ~aEE~Gl~GS~~y~~~~~~~-~~~i~~~in~D 336 (446)
+-||.|..|-..-++...+. .+.+.++.-.|
T Consensus 164 gmEEsgS~~L~~l~~~~kD~~~~~vD~vciSd 195 (473)
T KOG2276|consen 164 GMEESGSEGLDELIEKEKDKFFKDVDFVCISD 195 (473)
T ss_pred echhccCccHHHHHHHHhhhhhccCCEEEeeC
Confidence 99999998888877765533 23333333334
No 150
>PF07438 DUF1514: Protein of unknown function (DUF1514); InterPro: IPR009999 This entry is represented by Bacteriophage phi PVL, Orf60. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several Staphylococcus aureus and related bacteriophage proteins of around 65 residues in length. The function of this family is unknown.
Probab=43.09 E-value=69 Score=23.99 Aligned_cols=17 Identities=24% Similarity=0.511 Sum_probs=14.7
Q ss_pred hhHHHHHHHHhhcccCC
Q psy9208 12 WSAFTILVAAFTLLPTG 28 (446)
Q Consensus 12 ~~~~~~~~~~~~~~~~~ 28 (446)
|..+|++||-+++.+.+
T Consensus 2 WIiiSIvLai~lLI~l~ 18 (66)
T PF07438_consen 2 WIIISIVLAIALLISLS 18 (66)
T ss_pred hhhHHHHHHHHHHHHHh
Confidence 88999999998888775
No 151
>cd04258 AAK_AKiii-LysC-EC AAK_AKiii-LysC-EC: Amino Acid Kinase Superfamily (AAK), AKiii-LysC-EC: this CD includes the N-terminal catalytic aspartokinase (AK) domain of the lysine-sensitive aspartokinase isoenzyme AKIII. AKIII is a monofunctional class enzyme (LysC) found in some bacteria such as E. coli. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. In E. coli, LysC is reported to be a homodimer of 50 kD subunits.
Probab=41.34 E-value=1.7e+02 Score=28.97 Aligned_cols=129 Identities=14% Similarity=0.049 Sum_probs=68.5
Q ss_pred CCCCCHHHHHHHHHHHHHHHHcCCe-EEEEEEEeceeeecccEEEEeCCCC-----c---ee---eEEecCCCCCCCCCC
Q psy9208 84 RMTGSEALENSIDFMVKESKDFGLE-VWTENVTAPKWERHFEKVTLVKPWK-----S---DI---PVSTLGGSVGTPQGG 151 (446)
Q Consensus 84 R~~GS~g~~~a~~~i~~~l~~~Gl~-v~~q~f~~~~w~~~~~~l~~~~~~~-----~---~~---~~~~l~~s~~t~~~g 151 (446)
-...|-|+..++..+...|++.|++ .+....++..-........+..+.. . .+ .+...+ +.
T Consensus 114 d~i~s~GE~lSa~lla~~L~~~Gi~a~~ld~~~~i~t~~~~~~a~~~~~~~~~~~~~~~~~~~~~~v~Vv~-------Gf 186 (292)
T cd04258 114 DELLSFGERMSSLLFSEALREQGVPAEWFDVRTVLRTDSRFGRAAPDLNALAELAAKLLKPLLAGTVVVTQ-------GF 186 (292)
T ss_pred hHhhhHHHHHHHHHHHHHHHhCCCCeEEEchHHeEEecCCCccccccHHHHHHHHHHHHHHhhcCCEEEEC-------Cc
Confidence 3467889999999999999999998 5555432211000000011100000 0 00 011111 11
Q ss_pred ceeeccccEEEEecCCcCcchhhhhhhhhHHHHHHcCcEEEEEeccCCCCCC-CCCCccccCCCCCCCCCEeEcCHHHHH
Q psy9208 152 ITAEVAGKIVVFNQDFVSYGETVKYRSKGASVASKYGAVATLIRSVTPYSLA-TPHTGHQSYDAAVKPIPTACIAPEYAE 230 (446)
Q Consensus 152 i~a~v~GkIvlv~~~~~~yg~~~~~~~~~~~~A~~~GA~avii~~~~~~~~~-~p~~g~~~~~~~~~~iP~~~Is~~~~~ 230 (446)
+-.+..|.+..+.++...|. . +..|...+|.-++++.+.++-.. .|.. .+..-+.-.|+++++.
T Consensus 187 ~g~~~~G~~ttLGrggsD~~-------a-~~~a~~l~a~~~~i~tdv~Gv~~~dP~~-------~~~a~~i~~isy~Ea~ 251 (292)
T cd04258 187 IGSTEKGRTTTLGRGGSDYS-------A-ALLAEALHAEELQIWTDVAGIYTTDPRI-------CPAARAIKEISFAEAA 251 (292)
T ss_pred cccCCCCCEEecCCCchHHH-------H-HHHHHHcCCCEEEEEECCCccCCCCCCC-------CCCCeEeceeCHHHHH
Confidence 11124577777766632221 1 57788899999999988765322 1211 1122345578888888
Q ss_pred HHHH
Q psy9208 231 MLYR 234 (446)
Q Consensus 231 ~L~~ 234 (446)
.|..
T Consensus 252 ela~ 255 (292)
T cd04258 252 EMAT 255 (292)
T ss_pred HHHH
Confidence 7765
No 152
>PRK08588 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=40.71 E-value=1.3e+02 Score=30.27 Aligned_cols=79 Identities=10% Similarity=0.139 Sum_probs=49.4
Q ss_pred ChhHHHHHHHHHHHhCCCCCccccCCCCCCCCchHhHHh--CCCeEEEeeeCCCCCCCCCcCCCCCcCCCCHHHHHHHHH
Q psy9208 350 SPEAACILNKVLRLFKPINATRLVQSKYPVGSDIELFQE--KNIPGVALLNDNAKYFWYHHTRADTMSVLDSDTLDLCTA 427 (446)
Q Consensus 350 s~~l~~l~~~~~~~~~~~~~~~~~~~~~~~gSD~~~F~~--~GIP~~~l~~~~~~y~~~yHt~~Dt~d~ld~~~l~~~~~ 427 (446)
+..+.+.+.+..+.+. |........ ..++|-..|.. .|||++.+..+.. ...|++. ++++.+.+.+.++
T Consensus 296 ~~~l~~~~~~~~~~~~--g~~~~~~~~-~g~tD~~~~~~~~~~ip~i~~Gpg~~---~~~H~~~---E~i~~~~l~~~~~ 366 (377)
T PRK08588 296 DSKLVQLAKDVAKSYV--GQDIPLSAI-PGATDASSFLKKKPDFPVIIFGPGNN---LTAHQVD---EYVEKDMYLKFID 366 (377)
T ss_pred CCHHHHHHHHHHHHhh--CCCCceecC-CCcccHHHHhhhcCCCCEEEECCCCC---ccCCCCC---ceeEHHHHHHHHH
Confidence 3455666666655432 322211122 13488766764 4899987655421 3458863 8899999999999
Q ss_pred HHHHHHHHHh
Q psy9208 428 LWGGVAYILA 437 (446)
Q Consensus 428 ~~a~~~~~lA 437 (446)
++..++..+.
T Consensus 367 ~~~~~~~~~~ 376 (377)
T PRK08588 367 IYKEIIIQYL 376 (377)
T ss_pred HHHHHHHHHh
Confidence 9999887764
No 153
>PRK00466 acetyl-lysine deacetylase; Validated
Probab=38.73 E-value=98 Score=30.90 Aligned_cols=55 Identities=15% Similarity=0.067 Sum_probs=41.5
Q ss_pred CCCchHhHHhCCCeEEEeeeCCCCCCCCCcCCCCCcCCCCHHHHHHHHHHHHHHHHHHhcC
Q psy9208 379 VGSDIELFQEKNIPGVALLNDNAKYFWYHHTRADTMSVLDSDTLDLCTALWGGVAYILADL 439 (446)
Q Consensus 379 ~gSD~~~F~~~GIP~~~l~~~~~~y~~~yHt~~Dt~d~ld~~~l~~~~~~~a~~~~~lA~~ 439 (446)
.++|...|.+.|+|++.+..+.. ..-|++ =++++.+.+...++++..+++.+.+.
T Consensus 291 g~tD~~~~~~~~~~~v~fGpg~~---~~aH~~---nE~i~i~~l~~~~~~~~~~i~~l~~~ 345 (346)
T PRK00466 291 GTSDMNILQKITTSIATYGPGNS---MLEHTN---QEKITLDEIYIAVKTYMLAIEELWQK 345 (346)
T ss_pred CcCcHHHHHHhCCCEEEECCCCc---ccccCC---CceeeHHHHHHHHHHHHHHHHHHHhc
Confidence 45899777788988876654321 223775 47889999999999999999988764
No 154
>PRK07522 acetylornithine deacetylase; Provisional
Probab=37.71 E-value=58 Score=32.94 Aligned_cols=53 Identities=25% Similarity=0.308 Sum_probs=41.3
Q ss_pred CCCchHhHHhCCCeEEEeeeCCCCCCCCCcCCCCCcCCCCHHHHHHHHHHHHHHHHHHh
Q psy9208 379 VGSDIELFQEKNIPGVALLNDNAKYFWYHHTRADTMSVLDSDTLDLCTALWGGVAYILA 437 (446)
Q Consensus 379 ~gSD~~~F~~~GIP~~~l~~~~~~y~~~yHt~~Dt~d~ld~~~l~~~~~~~a~~~~~lA 437 (446)
.++|...|...|||++.+..+.. ...|++. ++++.+.+.+.++++..++..+|
T Consensus 332 ~~td~~~~~~~gip~v~~Gpg~~---~~~H~~~---E~i~i~~l~~~~~~~~~~~~~~~ 384 (385)
T PRK07522 332 YGTEAGLFQRAGIPTVVCGPGSI---EQAHKPD---EFVELAQLAACEAFLRRLLASLA 384 (385)
T ss_pred eecchHHhccCCCCEEEECCCCh---hhCCCCC---ccccHHHHHHHHHHHHHHHHHHh
Confidence 35888778788999987665432 2458853 78999999999999999988876
No 155
>PRK05111 acetylornithine deacetylase; Provisional
Probab=36.50 E-value=65 Score=32.57 Aligned_cols=54 Identities=11% Similarity=0.054 Sum_probs=41.1
Q ss_pred CCCchHhHHhCCCeEEEeeeCCCCCCCCCcCCCCCcCCCCHHHHHHHHHHHHHHHHHHhc
Q psy9208 379 VGSDIELFQEKNIPGVALLNDNAKYFWYHHTRADTMSVLDSDTLDLCTALWGGVAYILAD 438 (446)
Q Consensus 379 ~gSD~~~F~~~GIP~~~l~~~~~~y~~~yHt~~Dt~d~ld~~~l~~~~~~~a~~~~~lA~ 438 (446)
.++|..-|...|+|++.+..+.. ..-|++. ++++.+.+...+++++.++..++.
T Consensus 329 ~~~Da~~~~~~g~p~v~~G~g~~---~~~H~~~---E~v~~~~l~~~~~i~~~~~~~~~~ 382 (383)
T PRK05111 329 YCTEAPFIQQLGCPTLVLGPGSI---EQAHQPD---EYLELSFIKPTRELLRQLIHHFCL 382 (383)
T ss_pred eeccHHHHHhcCCCEEEECCCch---HhCcCCC---CcccHHHHHHHHHHHHHHHHHHhc
Confidence 46897655678999998766431 2347763 789999999999999999888753
No 156
>COG1473 AbgB Metal-dependent amidase/aminoacylase/carboxypeptidase [General function prediction only]
Probab=35.08 E-value=34 Score=35.29 Aligned_cols=55 Identities=16% Similarity=0.169 Sum_probs=37.1
Q ss_pred CCchHhHHhCCCeEEEeeeCCCC-CC--CCCcCCCCCcCCCCHHHHHHHHHHHHHHHHHHh
Q psy9208 380 GSDIELFQEKNIPGVALLNDNAK-YF--WYHHTRADTMSVLDSDTLDLCTALWGGVAYILA 437 (446)
Q Consensus 380 gSD~~~F~~~GIP~~~l~~~~~~-y~--~~yHt~~Dt~d~ld~~~l~~~~~~~a~~~~~lA 437 (446)
+|+.+.|+..-+|+.+++-+... .. +.+|.+.-+ +|.+.+...++++..++....
T Consensus 332 gsEDf~~~~~~~Pg~~~~lG~~~~~~~~~~~H~p~~~---~de~~l~~g~~~~~~~~~~~~ 389 (392)
T COG1473 332 GSEDFGYYLEKVPGAFFFLGTGSADGGTYPLHHPKFD---FDEAALATGVKLLAALALLYL 389 (392)
T ss_pred ccchHHHHHHhCCeeEEEeecCcCCCCcccccCCcCC---CCHHHHHHHHHHHHHHHHHHh
Confidence 67667888888998888776322 11 124554332 788888888888888776654
No 157
>KOG0538|consensus
Probab=34.36 E-value=1.1e+02 Score=30.54 Aligned_cols=33 Identities=33% Similarity=0.355 Sum_probs=25.2
Q ss_pred ccccEEEEecCCcCcchhhhhhhhhHHHHHHcCcEEEEEe
Q psy9208 156 VAGKIVVFNQDFVSYGETVKYRSKGASVASKYGAVATLIR 195 (446)
Q Consensus 156 v~GkIvlv~~~~~~yg~~~~~~~~~~~~A~~~GA~avii~ 195 (446)
|+|||.+.-.+..+-|.. +..|.+.||++|.+-
T Consensus 275 V~~ri~V~lDGGVR~G~D-------VlKALALGAk~VfiG 307 (363)
T KOG0538|consen 275 VEGRIPVFLDGGVRRGTD-------VLKALALGAKGVFIG 307 (363)
T ss_pred hcCceEEEEecCcccchH-------HHHHHhcccceEEec
Confidence 889998776665554532 678999999999984
No 158
>cd04257 AAK_AK-HSDH AAK_AK-HSDH: Amino Acid Kinase Superfamily (AAK), AK-HSDH; this CD includes the N-terminal catalytic domain of aspartokinase (AK) of the bifunctional enzyme AK - homoserine dehydrogenase (HSDH). These aspartokinases are found in bacteria (E. coli AKI-HSDHI, ThrA and E. coli AKII-HSDHII, MetL) and higher plants (Z. mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. ThrA and MetL are involved in threonine and methionine biosynthesis, respectively. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathway end products. Maize AK-HSDH is a Thr-sensitive 180-kD enzyme. Arabidopsis AK-HSDH is an alanine-act
Probab=33.92 E-value=1.2e+02 Score=29.96 Aligned_cols=123 Identities=15% Similarity=0.100 Sum_probs=65.7
Q ss_pred CCHHHHHHHHHHHHHHHHcCCe-EEEEEEEeceeeecccEEEEeCCC-C----------ceeeEEecCCCCCCCCCCcee
Q psy9208 87 GSEALENSIDFMVKESKDFGLE-VWTENVTAPKWERHFEKVTLVKPW-K----------SDIPVSTLGGSVGTPQGGITA 154 (446)
Q Consensus 87 GS~g~~~a~~~i~~~l~~~Gl~-v~~q~f~~~~w~~~~~~l~~~~~~-~----------~~~~~~~l~~s~~t~~~gi~a 154 (446)
=|-|+..++.-+...|++.|++ .+..+.++..-........+.... . ..+++ .+ +.+..
T Consensus 121 ls~GE~lSa~lla~~L~~~Gi~a~~ld~~~~i~t~~~~~~a~~~~~~~~~~l~~~~~~~~~v~V--v~-------Gfig~ 191 (294)
T cd04257 121 LSFGERLSARLLSALLNQQGLDAAWIDARELIVTDGGYLNAVVDIELSKERIKAWFSSNGKVIV--VT-------GFIAS 191 (294)
T ss_pred eeHHHHHHHHHHHHHHHhCCCCeEEEchHHeeEecCCCCceEechHhhHHHHHHHHhcCCCEEE--ec-------CcccC
Confidence 4569999999999999999998 555543211100011111111000 0 00111 11 11112
Q ss_pred eccccEEEEecCCcCcchhhhhhhhhHHHHHHcCcEEEEEeccCCCCCC-CCCCccccCCCCCCCCCEeEcCHHHHHHHH
Q psy9208 155 EVAGKIVVFNQDFVSYGETVKYRSKGASVASKYGAVATLIRSVTPYSLA-TPHTGHQSYDAAVKPIPTACIAPEYAEMLY 233 (446)
Q Consensus 155 ~v~GkIvlv~~~~~~yg~~~~~~~~~~~~A~~~GA~avii~~~~~~~~~-~p~~g~~~~~~~~~~iP~~~Is~~~~~~L~ 233 (446)
...|++....|+...| .. +..|...+|.-++++.+.++-.. .|.. .+..-+.-.|+++++..|.
T Consensus 192 ~~~G~~ttlGRGGSD~-------~A-~~lA~~l~a~~l~i~tdVdGvyt~DP~~-------~~~A~~i~~is~~ea~~l~ 256 (294)
T cd04257 192 NPQGETTTLGRNGSDY-------SA-AILAALLDADQVEIWTDVDGVYSADPRK-------VKDARLLPSLSYQEAMELS 256 (294)
T ss_pred CCCCCEEECCCCchHH-------HH-HHHHHHhCCCEEEEEeCCCccCCCCCCC-------CCCCeEeceeCHHHHHHHH
Confidence 3458888877763222 11 57788899999999988765322 1211 0112344567888887775
No 159
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=33.71 E-value=20 Score=29.24 Aligned_cols=20 Identities=30% Similarity=0.458 Sum_probs=14.8
Q ss_pred ccccchhHHHHHHHHhhcccCC
Q psy9208 7 SKLLGWSAFTILVAAFTLLPTG 28 (446)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~ 28 (446)
||. .++|+++||++|++++-
T Consensus 3 SK~--~llL~l~LA~lLlisSe 22 (95)
T PF07172_consen 3 SKA--FLLLGLLLAALLLISSE 22 (95)
T ss_pred hhH--HHHHHHHHHHHHHHHhh
Confidence 454 67788888888887763
No 160
>PRK07338 hypothetical protein; Provisional
Probab=33.31 E-value=1.3e+02 Score=30.59 Aligned_cols=43 Identities=7% Similarity=0.025 Sum_probs=29.1
Q ss_pred hHHHHHHHHHHccCCCCCCC-HHHHHHHHHHHHHHHHcCCeEEEEE
Q psy9208 69 HTYSTLADFVDKFGPRMTGS-EALENSIDFMVKESKDFGLEVWTEN 113 (446)
Q Consensus 69 ~~~~~l~~ls~~~g~R~~GS-~g~~~a~~~i~~~l~~~Gl~v~~q~ 113 (446)
++++.|.+|..- +-.++. +|..+.++||.++|++.|+++...+
T Consensus 18 ~~~~~l~~lv~i--~S~s~~~~~~~~~~~~l~~~l~~~G~~~~~~~ 61 (402)
T PRK07338 18 PMLEQLIAWAAI--NSGSRNLDGLARMAELLADAFAALPGEIELIP 61 (402)
T ss_pred HHHHHHHHHHhc--cCCCCCHHHHHHHHHHHHHHHHhCCCcEEEec
Confidence 455666666541 112222 5677899999999999999876544
No 161
>cd04243 AAK_AK-HSDH-like AAK_AK-HSDH-like: Amino Acid Kinase Superfamily (AAK), AK-HSDH-like; this family includes the N-terminal catalytic domain of aspartokinase (AK) of the bifunctional enzyme AK- homoserine dehydrogenase (HSDH). These aspartokinases are found in such bacteria as E. coli (AKI-HSDHI, ThrA and AKII-HSDHII, MetL) and in higher plants (Z. mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. ThrA and MetL are involved in threonine and methionine biosynthesis, respectively. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathway end products. Maize AK-HSDH is a Thr-sensitive 180-kD enzyme. Arabidopsis AK-
Probab=32.60 E-value=1.1e+02 Score=30.31 Aligned_cols=126 Identities=16% Similarity=0.062 Sum_probs=66.1
Q ss_pred CCHHHHHHHHHHHHHHHHcCCe-EEEEEEEeceeeecccEEEEeCCC-Ccee--------eEEecCCCCCCCCCCceeec
Q psy9208 87 GSEALENSIDFMVKESKDFGLE-VWTENVTAPKWERHFEKVTLVKPW-KSDI--------PVSTLGGSVGTPQGGITAEV 156 (446)
Q Consensus 87 GS~g~~~a~~~i~~~l~~~Gl~-v~~q~f~~~~w~~~~~~l~~~~~~-~~~~--------~~~~l~~s~~t~~~gi~a~v 156 (446)
=|-|+..++.-+...|++.|++ .+..+..+..-........+.... .+.+ .+...+ +.+-...
T Consensus 120 ls~GE~lSa~lla~~L~~~Gi~a~~ld~~~~i~t~~~~~~~~~~~~~s~~~~~~~~~~~~~v~Vv~-------Gfig~~~ 192 (293)
T cd04243 120 LSFGELLSSRLMSAYLQEQGLPAAWLDARELLLTDDGFLNAVVDLKLSKERLAQLLAEHGKVVVTQ-------GFIASNE 192 (293)
T ss_pred eeHHHHHHHHHHHHHHHhCCCCcEEEcHHHeEEecCCCCcchhhhHHHHHHHHHHHhcCCCEEEec-------CccccCC
Confidence 4569999999999999999998 555542211000000000000000 0000 011111 1111123
Q ss_pred cccEEEEecCCcCcchhhhhhhhhHHHHHHcCcEEEEEeccCCCCCC-CCCCccccCCCCCCCCCEeEcCHHHHHHHHH
Q psy9208 157 AGKIVVFNQDFVSYGETVKYRSKGASVASKYGAVATLIRSVTPYSLA-TPHTGHQSYDAAVKPIPTACIAPEYAEMLYR 234 (446)
Q Consensus 157 ~GkIvlv~~~~~~yg~~~~~~~~~~~~A~~~GA~avii~~~~~~~~~-~p~~g~~~~~~~~~~iP~~~Is~~~~~~L~~ 234 (446)
.|++..+.|+...|. . +..|...+|.-++++.+.++-.. .|.. .+..-+.-.|+++++..|..
T Consensus 193 ~G~~ttLGRggsD~~-------A-~~~a~~l~a~~~~i~tdvdGiyt~dP~~-------~~~a~~i~~ls~~ea~~l~~ 256 (293)
T cd04243 193 DGETTTLGRGGSDYS-------A-ALLAALLDAEEVEIWTDVDGVYTADPRK-------VPDARLLKELSYDEAMELAY 256 (293)
T ss_pred CCCEEEeCCCCcHHH-------H-HHHHHHcCCCEEEEEeCCCccCCCCCCC-------CCCCeEeceeCHHHHHHHHh
Confidence 588888877643221 1 57788899999999988765322 1111 01223455788888887765
No 162
>PRK06446 hypothetical protein; Provisional
Probab=32.47 E-value=2.7e+02 Score=28.80 Aligned_cols=53 Identities=11% Similarity=0.021 Sum_probs=37.0
Q ss_pred CchHhHHh-CCCeEEEee--eCCCCCCCCCcCCCCCcCCCCHHHHHHHHHHHHHHHHHHhc
Q psy9208 381 SDIELFQE-KNIPGVALL--NDNAKYFWYHHTRADTMSVLDSDTLDLCTALWGGVAYILAD 438 (446)
Q Consensus 381 SD~~~F~~-~GIP~~~l~--~~~~~y~~~yHt~~Dt~d~ld~~~l~~~~~~~a~~~~~lA~ 438 (446)
+|-..|.. .|||++... .++. . ..-|++ =++++.+.+...++++..++..++.
T Consensus 380 ~d~~~~~~~~gip~v~~~~g~g~~-~-~~~H~~---dE~i~i~~l~~~~~~~~~~~~~~~~ 435 (436)
T PRK06446 380 QPMGLFVYKLGIRDIVSAIGVGGY-Y-SNAHAP---NENIRIDDYYKAIKHTEEFLKLYST 435 (436)
T ss_pred chHHHHHHHhCCCcceeecccCCC-C-cCCcCC---CCCcCHHHHHHHHHHHHHHHHHhcC
Confidence 46556654 799986422 2211 1 234774 4789999999999999999988775
No 163
>PRK06837 acetylornithine deacetylase; Provisional
Probab=31.96 E-value=1.5e+02 Score=30.64 Aligned_cols=53 Identities=11% Similarity=-0.007 Sum_probs=39.5
Q ss_pred CCCchHhHHh-CCCeEEEeeeCCCCCCCCCcCCCCCcCCCCHHHHHHHHHHHHHHHHHHhc
Q psy9208 379 VGSDIELFQE-KNIPGVALLNDNAKYFWYHHTRADTMSVLDSDTLDLCTALWGGVAYILAD 438 (446)
Q Consensus 379 ~gSD~~~F~~-~GIP~~~l~~~~~~y~~~yHt~~Dt~d~ld~~~l~~~~~~~a~~~~~lA~ 438 (446)
.++|...|.. .|||++.+..+. ...|++ =++++.+.+...+++++.+++.+..
T Consensus 370 g~tDa~~~~~~~gip~v~~Gp~~----~~~H~~---nE~i~i~~l~~~~~~~~~~l~~~~~ 423 (427)
T PRK06837 370 AYTDTRFYGLYYGIPALCYGPSG----EGIHGF---DERVDLESVRKVTKTIALFVAEWCG 423 (427)
T ss_pred eccchHHHhccCCCCEEEECCCC----CccCCC---CceEEHHHHHHHHHHHHHHHHHHhC
Confidence 3588766653 799988654432 235886 3779999999999999999988863
No 164
>PRK09034 aspartate kinase; Reviewed
Probab=31.62 E-value=80 Score=33.25 Aligned_cols=123 Identities=13% Similarity=0.020 Sum_probs=67.4
Q ss_pred CHHHHHHHHHHHHHHHHcCCe-EEEEEEEeceeee-cccEEEEeCCC---------CceeeEEecCCCCCCCCCCceeec
Q psy9208 88 SEALENSIDFMVKESKDFGLE-VWTENVTAPKWER-HFEKVTLVKPW---------KSDIPVSTLGGSVGTPQGGITAEV 156 (446)
Q Consensus 88 S~g~~~a~~~i~~~l~~~Gl~-v~~q~f~~~~w~~-~~~~l~~~~~~---------~~~~~~~~l~~s~~t~~~gi~a~v 156 (446)
|-|+..++..+...|++.|++ .+....++..-.. ......+.... ...+.+ .+ +-+-...
T Consensus 117 s~GE~~S~~l~a~~L~~~g~~a~~~~~~~~~~~t~~~~~~a~i~~~~~~~~~~~~~~~~v~V--v~-------GFig~~~ 187 (454)
T PRK09034 117 ARGEDLNAKLIAAYLNYEGIPARYVDPKEAGIIVTDEPGNAQVLPESYDNLKKLRDRDEKLV--IP-------GFFGVTK 187 (454)
T ss_pred HHHHHHHHHHHHHHHHhCCCCcEEEchHHceEEecCCcCceeEcHhhHHHHHHHHhcCCEEE--ec-------CccccCC
Confidence 568889999999999999998 5555432211000 00011111000 001111 11 1111234
Q ss_pred cccEEEEecCCcCcchhhhhhhhhHHHHHHcCcEEEEEeccCCCCCC-CCCCccccCCCCCCCCCEeEcCHHHHHHHHH
Q psy9208 157 AGKIVVFNQDFVSYGETVKYRSKGASVASKYGAVATLIRSVTPYSLA-TPHTGHQSYDAAVKPIPTACIAPEYAEMLYR 234 (446)
Q Consensus 157 ~GkIvlv~~~~~~yg~~~~~~~~~~~~A~~~GA~avii~~~~~~~~~-~p~~g~~~~~~~~~~iP~~~Is~~~~~~L~~ 234 (446)
.|+++.+.||...|. . +..|...+|.-+.++.+.++-.. .|.. .+..-+.-.||++++..|..
T Consensus 188 ~g~~ttlgRggSD~t-------A-~~la~~l~A~~~~i~tdV~Gi~taDPr~-------v~~A~~l~~lsy~Ea~ela~ 251 (454)
T PRK09034 188 DGQIVTFSRGGSDIT-------G-AILARGVKADLYENFTDVDGIYAANPRI-------VKNPKSIKEITYREMRELSY 251 (454)
T ss_pred CCCEEecCCCcHHHH-------H-HHHHHHcCCCEEEEEecCCccCcCCCCC-------CCCCeECCccCHHHHHHHHh
Confidence 689999888743232 2 67889999999999998765321 1211 01112334789999988754
No 165
>PRK04443 acetyl-lysine deacetylase; Provisional
Probab=30.65 E-value=1.4e+02 Score=29.89 Aligned_cols=52 Identities=21% Similarity=0.047 Sum_probs=37.9
Q ss_pred CCCchHhHHh-CCCeEEEeeeCCCCCCCCCcCCCCCcCCCCHHHHHHHHHHHHHHHHHH
Q psy9208 379 VGSDIELFQE-KNIPGVALLNDNAKYFWYHHTRADTMSVLDSDTLDLCTALWGGVAYIL 436 (446)
Q Consensus 379 ~gSD~~~F~~-~GIP~~~l~~~~~~y~~~yHt~~Dt~d~ld~~~l~~~~~~~a~~~~~l 436 (446)
.++|...|.+ .|||++.+..+.. ...|++ =++++.+.+....+++..++..|
T Consensus 296 g~tD~~~~~~~~gip~v~~Gpg~~---~~~H~~---dE~i~i~~l~~~~~~~~~~~~~l 348 (348)
T PRK04443 296 GTSDMNVVAPAWGCPMVAYGPGDS---DLDHTP---DEHLPLAEYLRAIAVLTDVLERL 348 (348)
T ss_pred cCCcHHHHhhhcCCCEEEECCCCc---cccCCC---cccccHHHHHHHHHHHHHHHhhC
Confidence 4589877765 6999986654431 234875 37889999999999888887654
No 166
>PRK10628 LigB family dioxygenase; Provisional
Probab=29.89 E-value=1.8e+02 Score=28.02 Aligned_cols=47 Identities=30% Similarity=0.305 Sum_probs=28.6
Q ss_pred eeecChhHHHHHHHHHHHhCCCCCccccCCCCCCCCchHhHH-------hCCCeEEEeee
Q psy9208 346 SLKGSPEAACILNKVLRLFKPINATRLVQSKYPVGSDIELFQ-------EKNIPGVALLN 398 (446)
Q Consensus 346 ~~~gs~~l~~l~~~~~~~~~~~~~~~~~~~~~~~gSD~~~F~-------~~GIP~~~l~~ 398 (446)
...|++++...+.+.++. .+.. ..... .|=||..|. ++.||++.+.-
T Consensus 65 pa~G~p~LA~~i~~ll~~---~~~~-~~~~~--rGlDHG~WvpL~~m~P~adIPVvqlSl 118 (246)
T PRK10628 65 PAPGSPALAQRLVELLAP---VPVT-LDKEA--WGFDHGSWGVLIKMYPDADIPMVQLSI 118 (246)
T ss_pred CCCCCHHHHHHHHHHhhh---cCcc-cCCcc--cCcccchhhhhhhhCCCCCCCeEEeec
Confidence 457888776666655543 2332 22222 467885543 48999999975
No 167
>TIGR01910 DapE-ArgE acetylornithine deacetylase or succinyl-diaminopimelate desuccinylase. This group of sequences contains annotations for both acetylornithine deacetylase and succinyl-diaminopimelate desuccinylase, but does not contain any members with experimental characterization. Bacillus, Staphylococcus and Sulfolobus species contain multiple hits to this subfamily and each may have a separate activity. Determining which is which must await further laboratory research.
Probab=29.26 E-value=82 Score=31.81 Aligned_cols=28 Identities=11% Similarity=0.209 Sum_probs=23.7
Q ss_pred CCHHHHHHHHHHHHHHHHcCCeEEEEEE
Q psy9208 87 GSEALENSIDFMVKESKDFGLEVWTENV 114 (446)
Q Consensus 87 GS~g~~~a~~~i~~~l~~~Gl~v~~q~f 114 (446)
.|.++.++++||.++|+++|++++.++.
T Consensus 16 ~~~~e~~~a~~l~~~l~~~G~~~~~~~~ 43 (375)
T TIGR01910 16 PGGNEETIANYIKDLLREFGFSTDVIEI 43 (375)
T ss_pred CCcCHHHHHHHHHHHHHHCCCceEEEec
Confidence 4678899999999999999999766543
No 168
>PRK13007 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=29.18 E-value=85 Score=31.26 Aligned_cols=49 Identities=16% Similarity=0.228 Sum_probs=37.1
Q ss_pred CCCchHhHHhCCCeEEEeeeCCCCCCCCCcCCCCCcCCCCHHHHHHHHHHHHHHH
Q psy9208 379 VGSDIELFQEKNIPGVALLNDNAKYFWYHHTRADTMSVLDSDTLDLCTALWGGVA 433 (446)
Q Consensus 379 ~gSD~~~F~~~GIP~~~l~~~~~~y~~~yHt~~Dt~d~ld~~~l~~~~~~~a~~~ 433 (446)
.++|..-|...|||++.+..+.. ..-|++. ++++.+.+...+++++.++
T Consensus 303 g~td~~~~~~~Gip~v~~Gpg~~---~~~H~~~---E~v~i~~l~~~~~~~~~~~ 351 (352)
T PRK13007 303 GWTDVARFSALGIPAVNFGPGDP---ALAHQRD---EHVPVAQITACARILRRWL 351 (352)
T ss_pred ccchHHHHHhCCCCEEEeCCCch---hhccCCC---CceEHHHHHHHHHHHHHHh
Confidence 45898878889999998754322 2458863 8899999999998877654
No 169
>PRK07079 hypothetical protein; Provisional
Probab=29.10 E-value=3.6e+02 Score=28.19 Aligned_cols=56 Identities=11% Similarity=0.125 Sum_probs=40.1
Q ss_pred CchHhHHh-CCCeEEEeeeCCCCCCCCCcCCCCCcCCCCHHHHHHHHHHHHHHHHHHhcCCC
Q psy9208 381 SDIELFQE-KNIPGVALLNDNAKYFWYHHTRADTMSVLDSDTLDLCTALWGGVAYILADLSV 441 (446)
Q Consensus 381 SD~~~F~~-~GIP~~~l~~~~~~y~~~yHt~~Dt~d~ld~~~l~~~~~~~a~~~~~lA~~~~ 441 (446)
+|...|.. .|||++.+-.+... ...|++ =++++.+.+...+++++.+++.+++..-
T Consensus 403 ~d~~~~~~~~giP~v~~g~~~~~--~~~H~~---dE~v~l~~l~~~~~~~~~~~~~~~~~~~ 459 (469)
T PRK07079 403 LPNDVFADILGLPTLWVPHSYPA--CSQHAP---NEHLLASVAREGLQIMAGLFWDLGEQGP 459 (469)
T ss_pred hhHHHHHHHhCCCEEEecCCCCC--ccCcCC---CCCCCHHHHHHHHHHHHHHHHHHhccCC
Confidence 47666764 79999954211111 124874 3789999999999999999999987653
No 170
>TIGR01893 aa-his-dipept aminoacyl-histidine dipeptidase.
Probab=27.96 E-value=94 Score=32.77 Aligned_cols=50 Identities=10% Similarity=0.094 Sum_probs=36.2
Q ss_pred CCCchHhHHhC--CCeEEEeeeCCCCCCCCCcCCCCCcCCCCHHHHHHHHHHHHHHHHH
Q psy9208 379 VGSDIELFQEK--NIPGVALLNDNAKYFWYHHTRADTMSVLDSDTLDLCTALWGGVAYI 435 (446)
Q Consensus 379 ~gSD~~~F~~~--GIP~~~l~~~~~~y~~~yHt~~Dt~d~ld~~~l~~~~~~~a~~~~~ 435 (446)
.++|...|.+. +||++.+..+. ...|++ =++++.+.+.+.+++++.++..
T Consensus 424 Ggtd~~~~~~~~~~i~~v~~Gp~~----~~~H~~---nE~i~i~~l~~~~~~~~~ll~~ 475 (477)
T TIGR01893 424 AGLECGIISSKIPDIDMISIGPNI----YDPHSP---NERVSISSVEKVWDFLVKVLER 475 (477)
T ss_pred cCccHHHHHhhCCCceEEEeCCCC----CCCCCC---CceeeHHHHHHHHHHHHHHHHh
Confidence 45897666654 89888775532 345886 3788999999999988887754
No 171
>PRK13004 peptidase; Reviewed
Probab=27.13 E-value=1.7e+02 Score=29.81 Aligned_cols=36 Identities=14% Similarity=0.194 Sum_probs=25.7
Q ss_pred hHHHHHHHHHHccCCCCCCCHHHHHHHHHHHHHHHHcCCe
Q psy9208 69 HTYSTLADFVDKFGPRMTGSEALENSIDFMVKESKDFGLE 108 (446)
Q Consensus 69 ~~~~~l~~ls~~~g~R~~GS~g~~~a~~~i~~~l~~~Gl~ 108 (446)
+..+.+++|.+ .-+-|..+.++++||.+.|+++|++
T Consensus 16 ~~~~~l~~lv~----ips~s~~e~~~a~~l~~~l~~~G~~ 51 (399)
T PRK13004 16 DMTRFLRDLIR----IPSESGDEKRVVKRIKEEMEKVGFD 51 (399)
T ss_pred HHHHHHHHHhc----CCCCCCchHHHHHHHHHHHHHcCCc
Confidence 34455666654 2233456788999999999999997
No 172
>COG0624 ArgE Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases [Amino acid transport and metabolism]
Probab=26.23 E-value=3.6e+02 Score=27.51 Aligned_cols=53 Identities=19% Similarity=0.243 Sum_probs=39.8
Q ss_pred CCchHhHHhCCCeEEEeeeCCCCCCCCCcCCCCCcCCCCHHHHHHHHHHHHHHHHHHhc
Q psy9208 380 GSDIELFQEKNIPGVALLNDNAKYFWYHHTRADTMSVLDSDTLDLCTALWGGVAYILAD 438 (446)
Q Consensus 380 gSD~~~F~~~GIP~~~l~~~~~~y~~~yHt~~Dt~d~ld~~~l~~~~~~~a~~~~~lA~ 438 (446)
++|-..|...|+|++.+..+.. ..-|++ =++++.+.+...+++++.+++.++.
T Consensus 356 ~~da~~~~~~~~~~~~fgp~~~---~~~H~~---~E~v~i~~l~~~~~~~~~~l~~l~~ 408 (409)
T COG0624 356 THDARFFARLGIPAVIFGPGDI---GLAHQP---NEYVELEDLVKGAKVLARLLYELAE 408 (409)
T ss_pred cchHHHHHhcCCeeEEECCCCc---ccccCC---CceeeHHHHHHHHHHHHHHHHHHhc
Confidence 3777777789999544444332 234775 3789999999999999999999875
No 173
>TIGR01892 AcOrn-deacetyl acetylornithine deacetylase (ArgE). This model represents a clade of acetylornithine deacetylases from proteobacteria. This enzyme is the final step of the "acetylated" ornithine biosynthesis pathway. The enzyme is closely related to dapE, succinyl-diaminopimelate desuccinylase, and outside of this clade annotation is very inaccurate as to which function should be ascribed to genes.
Probab=26.00 E-value=80 Score=31.52 Aligned_cols=48 Identities=19% Similarity=0.252 Sum_probs=35.7
Q ss_pred CCCchHhHHhCCCeEEEeeeCCCCCCCCCcCCCCCcCCCCHHHHHHHHHHHHHH
Q psy9208 379 VGSDIELFQEKNIPGVALLNDNAKYFWYHHTRADTMSVLDSDTLDLCTALWGGV 432 (446)
Q Consensus 379 ~gSD~~~F~~~GIP~~~l~~~~~~y~~~yHt~~Dt~d~ld~~~l~~~~~~~a~~ 432 (446)
.++|-..|...|||++.+..+.. ...|++. ++++.+.+.+.++++..+
T Consensus 316 ~~tD~~~~~~~gip~v~~Gpg~~---~~~H~~~---E~i~i~~l~~~~~~~~~~ 363 (364)
T TIGR01892 316 YGTEAPQFQELGAEAVVCGPGDI---RQAHQPD---EYVEIEDLVRCRAVLARL 363 (364)
T ss_pred ccccHHHHHhCCCcEEEECCCCh---HhCCCCC---ceeeHHHHHHHHHHHHHh
Confidence 36898778788999987665431 2348763 789999999999877654
No 174
>TIGR03526 selenium_YgeY putative selenium metabolism hydrolase. SelD, selenophosphate synthase, is the selenium donor protein for both selenocysteine and selenouridine biosynthesis systems, but it occurs also in a few prokaryotes that have neither of those pathways. The method of partial phylogenetic profiling, starting from such orphan-selD genomes, identifies this protein as one of those most strongly correlated to SelD occurrence. Its distribution is also well correlated with that of family TIGR03309, a putative accessory protein of labile selenium (non-selenocysteine) enzyme maturation. This family includes the uncharacterized YgeY of Escherichia coli, and belongs to a larger family of metalloenzymes in which some are known peptidases, others enzymes of different types.
Probab=25.51 E-value=1.8e+02 Score=29.67 Aligned_cols=38 Identities=21% Similarity=0.174 Sum_probs=25.1
Q ss_pred HHHHHHHHHHccCCCCCCCHHHHHHHHHHHHHHHHcCCe-EEE
Q psy9208 70 TYSTLADFVDKFGPRMTGSEALENSIDFMVKESKDFGLE-VWT 111 (446)
Q Consensus 70 ~~~~l~~ls~~~g~R~~GS~g~~~a~~~i~~~l~~~Gl~-v~~ 111 (446)
..+.+++|..- +-. |..+.++++||.+.|++.|++ +..
T Consensus 15 ~~~~l~~Lv~i--ps~--s~~e~~~~~~l~~~l~~~g~~~~~~ 53 (395)
T TIGR03526 15 MIRFLRDLVAI--PSE--SGDEGRVALRIKQEMEKLGFDKVEI 53 (395)
T ss_pred HHHHHHHHhcC--CCC--CCchHHHHHHHHHHHHHcCCceEEE
Confidence 34555566541 222 334668999999999999997 443
No 175
>PLN02693 IAA-amino acid hydrolase
Probab=25.02 E-value=2.9e+02 Score=28.83 Aligned_cols=23 Identities=9% Similarity=0.026 Sum_probs=19.1
Q ss_pred CHHHHHHHHHHHHHHHHcCCeEE
Q psy9208 88 SEALENSIDFMVKESKDFGLEVW 110 (446)
Q Consensus 88 S~g~~~a~~~i~~~l~~~Gl~v~ 110 (446)
|-.+.++++||.+.|+++|+++.
T Consensus 63 s~~E~~ta~~i~~~L~~~G~~~~ 85 (437)
T PLN02693 63 GYEEFETSKLIRSELDLIGIKYR 85 (437)
T ss_pred CCchHHHHHHHHHHHHHCCCeeE
Confidence 33457899999999999999854
No 176
>PRK09864 putative peptidase; Provisional
Probab=24.05 E-value=58 Score=33.17 Aligned_cols=34 Identities=18% Similarity=0.234 Sum_probs=23.0
Q ss_pred eceEEEEEcCcCCCCcEEEEEecCCCCCCC-CCcccCC
Q psy9208 259 TRNTIVQIRGRECPDKVVITSGHLDSWDVG-QGAMDDG 295 (446)
Q Consensus 259 s~NVia~i~G~~~~~~~Vvl~aH~Ds~~~g-~Ga~Dng 295 (446)
..|+|+.. |. ..+.|++.||.|..++= ..+++||
T Consensus 42 ~GNli~~~-g~--~~~kvml~AHmDevG~mV~~I~~~G 76 (356)
T PRK09864 42 LGSFVARK-GN--KGPKVAVVGHMDEVGFMVTHIDESG 76 (356)
T ss_pred CCCEEEEe-CC--CCcEEEEEecccccCEEEEEECCCC
Confidence 47999986 53 22479999999998731 2344443
No 177
>PRK08262 hypothetical protein; Provisional
Probab=23.59 E-value=90 Score=32.92 Aligned_cols=54 Identities=7% Similarity=-0.037 Sum_probs=33.7
Q ss_pred CCCchHhHHhCCCeEEEee-e---CCCCCCCCCcCCCCCcCCCCHHHHHHHHHHHHHHHHHHh
Q psy9208 379 VGSDIELFQEKNIPGVALL-N---DNAKYFWYHHTRADTMSVLDSDTLDLCTALWGGVAYILA 437 (446)
Q Consensus 379 ~gSD~~~F~~~GIP~~~l~-~---~~~~y~~~yHt~~Dt~d~ld~~~l~~~~~~~a~~~~~lA 437 (446)
.++|...|... +|.+..+ . ++.. ....|++ =++++.+.+.+.++++..++..++
T Consensus 427 g~tDa~~~~~~-~p~~~~~~~~~~gpg~-~~~~Ht~---dE~i~i~~l~~~~~i~~~~l~~~~ 484 (486)
T PRK08262 427 GATDSRHYSGI-SDNVYRFSPLRLSPED-LARFHGT---NERISVANYARMIRFYYRLIENAA 484 (486)
T ss_pred ccccHHHHHHh-cCCeEEECCccCCccc-ccCCCCC---CCceeHHHHHHHHHHHHHHHHHhh
Confidence 35888655554 3333221 1 1111 1245775 377899999999999999988775
No 178
>PF09882 DUF2109: Predicted membrane protein (DUF2109); InterPro: IPR019214 This entry is found in various hypothetical archaeal proteins and has no known function.
Probab=22.07 E-value=37 Score=26.39 Aligned_cols=23 Identities=30% Similarity=0.400 Sum_probs=20.2
Q ss_pred CcccccccchhHHHHHHHHhhcc
Q psy9208 3 STRGSKLLGWSAFTILVAAFTLL 25 (446)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~ 25 (446)
.+|.+|+.-+|+++|.++++.++
T Consensus 21 ~~r~~KL~yLnv~~F~iaalIaL 43 (78)
T PF09882_consen 21 KSRARKLLYLNVINFAIAALIAL 43 (78)
T ss_pred HhHHHhhhHHHHHHHHHHHHHHH
Confidence 57899999999999999996665
No 179
>PRK15026 aminoacyl-histidine dipeptidase; Provisional
Probab=22.04 E-value=1.8e+02 Score=30.94 Aligned_cols=42 Identities=19% Similarity=0.279 Sum_probs=32.0
Q ss_pred hHHHHHHHHHHccCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEE
Q psy9208 69 HTYSTLADFVDKFGPRMTGSEALENSIDFMVKESKDFGLEVWTENV 114 (446)
Q Consensus 69 ~~~~~l~~ls~~~g~R~~GS~g~~~a~~~i~~~l~~~Gl~v~~q~f 114 (446)
..++.|++|+.- +|.+ ..+++.++||.+.+++.|++++.++.
T Consensus 11 ~~~~~l~~Lv~i--ps~S--~~e~~~~~~l~~~~~~~G~~~~~d~~ 52 (485)
T PRK15026 11 PLWDIFAKICSI--PHPS--YHEEQLAEYIVGWAKEKGFHVERDQV 52 (485)
T ss_pred HHHHHHHHHhCC--CCCC--CCHHHHHHHHHHHHHhCCCEEEEEec
Confidence 567788888762 4544 45669999999999999999776543
No 180
>PLN02280 IAA-amino acid hydrolase
Probab=21.52 E-value=5.3e+02 Score=27.28 Aligned_cols=24 Identities=8% Similarity=0.040 Sum_probs=20.2
Q ss_pred CHHHHHHHHHHHHHHHHcCCeEEE
Q psy9208 88 SEALENSIDFMVKESKDFGLEVWT 111 (446)
Q Consensus 88 S~g~~~a~~~i~~~l~~~Gl~v~~ 111 (446)
+-.+.++++||.+.|+++|+++..
T Consensus 113 s~~E~~t~~~i~~~L~~~G~~~~~ 136 (478)
T PLN02280 113 AFEEYKTSELVRSELDRMGIMYRY 136 (478)
T ss_pred CCcHHHHHHHHHHHHHHCCCeEEe
Confidence 456789999999999999998543
No 181
>TIGR03320 ygeY M20/DapE family protein YgeY. Members of this protein family, including the YgeY protein of Escherichia coli, typically are found in extended genomic regions associated with purine catabolism. Homologs include peptidases and deacylases of the M20/M25 /M40 and DapE/ArgE families. The function is unknown.
Probab=21.13 E-value=2.5e+02 Score=28.48 Aligned_cols=39 Identities=18% Similarity=0.239 Sum_probs=25.7
Q ss_pred hHHHHHHHHHHccCCCCCCCHHHHHHHHHHHHHHHHcCCe-EEE
Q psy9208 69 HTYSTLADFVDKFGPRMTGSEALENSIDFMVKESKDFGLE-VWT 111 (446)
Q Consensus 69 ~~~~~l~~ls~~~g~R~~GS~g~~~a~~~i~~~l~~~Gl~-v~~ 111 (446)
+..+.+++|..- +-.+ ..+.++++||.+.|++.|++ +..
T Consensus 14 ~~~~~~~~lv~i--~s~s--~~e~~~~~~l~~~l~~~G~~~~~~ 53 (395)
T TIGR03320 14 DMIRFLRDLVAI--PSES--GDEKRVAERIKEEMEKLGFDKVEI 53 (395)
T ss_pred HHHHHHHHHHcC--CCCC--CchHHHHHHHHHHHHHhCCcEEEE
Confidence 344556666541 2222 34578999999999999997 444
No 182
>PRK06156 hypothetical protein; Provisional
Probab=20.75 E-value=2.1e+02 Score=30.63 Aligned_cols=28 Identities=11% Similarity=0.153 Sum_probs=24.4
Q ss_pred cCCCCCcCCCCHHHHHHHHHHHHHHHHHHhc
Q psy9208 408 HTRADTMSVLDSDTLDLCTALWGGVAYILAD 438 (446)
Q Consensus 408 Ht~~Dt~d~ld~~~l~~~~~~~a~~~~~lA~ 438 (446)
|++ =+.++.+.+...+++++.++..+..
T Consensus 489 Ht~---dE~V~ie~l~~~~~i~~~~l~~l~~ 516 (520)
T PRK06156 489 HTE---NEFKTVEQFMLDLQMYTEMLIRIGN 516 (520)
T ss_pred cCc---ccCCCHHHHHHHHHHHHHHHHHHhc
Confidence 774 3789999999999999999999876
No 183
>PRK08201 hypothetical protein; Provisional
Probab=20.55 E-value=5.7e+02 Score=26.51 Aligned_cols=49 Identities=16% Similarity=0.004 Sum_probs=36.5
Q ss_pred hHH-hCCCeEEEeeeCCCCCCCCCcCCCCCcCCCCHHHHHHHHHHHHHHHHHHhc
Q psy9208 385 LFQ-EKNIPGVALLNDNAKYFWYHHTRADTMSVLDSDTLDLCTALWGGVAYILAD 438 (446)
Q Consensus 385 ~F~-~~GIP~~~l~~~~~~y~~~yHt~~Dt~d~ld~~~l~~~~~~~a~~~~~lA~ 438 (446)
.|. ..|||++.+-.+.. ....|++ =++++.+.+.+.++++..+++.++.
T Consensus 406 ~~~~~~gip~v~~GpG~~--~~~~H~~---nE~v~i~~l~~~~~~l~~~~~~~~~ 455 (456)
T PRK08201 406 TFSSQLHIPIVLMGFGLP--SENFHAP---NEHFHLENFDKGLRTLVEYWHQLAE 455 (456)
T ss_pred HHHHHhCCCEEEecCCCC--CCCCCCC---CCCcCHHHHHHHHHHHHHHHHHhhc
Confidence 455 58999986544421 1235874 3789999999999999999999864
No 184
>PRK13013 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=20.19 E-value=4.8e+02 Score=26.66 Aligned_cols=55 Identities=9% Similarity=-0.157 Sum_probs=39.9
Q ss_pred CCCchHhHHhCC-C-eEEEeeeCCCCCCCCCcCCCCCcCCCCHHHHHHHHHHHHHHHHHHhcC
Q psy9208 379 VGSDIELFQEKN-I-PGVALLNDNAKYFWYHHTRADTMSVLDSDTLDLCTALWGGVAYILADL 439 (446)
Q Consensus 379 ~gSD~~~F~~~G-I-P~~~l~~~~~~y~~~yHt~~Dt~d~ld~~~l~~~~~~~a~~~~~lA~~ 439 (446)
.++|...|.+.| + |++.+..+.. ...|++ =++++.+.+.+.+++++.+++.+...
T Consensus 368 g~~D~~~~~~~g~~~~~v~fGPg~~---~~aH~~---nE~v~i~~l~~~~~~l~~~l~~~~~~ 424 (427)
T PRK13013 368 GTYDQKHIDRIGKLKNCIAYGPGIL---DLAHQP---DEWVGIADMVDSAKVMALVLADLLAG 424 (427)
T ss_pred ccCCHHHHHhcCCCCCEEEECCCCc---cccCCC---CceeEHHHHHHHHHHHHHHHHHHhcc
Confidence 358987777888 4 5764443221 235775 37889999999999999999988754
Done!