BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9209
(349 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2FO7|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Trigonal Crystal Form)
pdb|2HYZ|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Orthorombic Crystal Form)
Length = 136
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 59/111 (53%)
Query: 94 QAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQT 153
+A+ Y+Q+AL+L+P W LG+ Y + + + AI+ Y++A+E++ AWY LG
Sbjct: 19 EAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNA 78
Query: 154 YEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKS 204
Y + YY++A + P LG A+ KQ EA++ Y K+
Sbjct: 79 YYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKA 129
Score = 48.1 bits (113), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 58/125 (46%)
Query: 112 VWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAH 171
W LG+ Y + + + AI+ Y++A+E++ AWY LG Y + YY++A
Sbjct: 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKAL 62
Query: 172 MVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKLAKLYDKLNETEAA 231
+ P LG A+ KQ EA++ Y K+ + +A + L Y K + + A
Sbjct: 63 ELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEA 122
Query: 232 ADLFM 236
+ +
Sbjct: 123 IEYYQ 127
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 54/96 (56%), Gaps = 3/96 (3%)
Query: 45 LANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDESSSQAVLYFQRALK 104
L N + K + D A + QK L+ + + EA L + A +Q D +A+ Y+Q+AL+
Sbjct: 41 LGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGN-AYYKQGD--YDEAIEYYQKALE 97
Query: 105 LNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEIN 140
L+P W LG+ Y + + + AI+ Y++A+E++
Sbjct: 98 LDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 133
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 35/63 (55%), Gaps = 3/63 (4%)
Query: 45 LANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDESSSQAVLYFQRALK 104
L N + K + D A + QK L+ + + EA L + A +Q D +A+ Y+Q+AL+
Sbjct: 75 LGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGN-AYYKQGD--YDEAIEYYQKALE 131
Query: 105 LNP 107
L+P
Sbjct: 132 LDP 134
>pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA0|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 125
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 56/99 (56%)
Query: 93 SQAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQ 152
+A+ Y+Q+AL+L+PN W LG+ Y + + + AI+ Y++A+E++ + AWY LG
Sbjct: 26 DEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGN 85
Query: 153 TYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQ 191
Y + YY++A + PN+ LG A +KQ
Sbjct: 86 AYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQ 124
Score = 48.1 bits (113), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 49/93 (52%)
Query: 112 VWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAH 171
W LG+ Y + + + AI+ Y++A+E++ + AWY LG Y + YY++A
Sbjct: 11 AWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKAL 70
Query: 172 MVRPNDPRMLTALGEAFEKQEKISEAMKCYNKS 204
+ PN+ LG A+ KQ EA++ Y K+
Sbjct: 71 ELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKA 103
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 50/110 (45%), Gaps = 1/110 (0%)
Query: 145 RAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKS 204
AWY LG Y + YY++A + PN+ LG A+ KQ EA++ Y K+
Sbjct: 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKA 69
Query: 205 RAIGDADGKALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCG 254
+ + +A + L Y K + + A + + + + +LD A + G
Sbjct: 70 LELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKAL-ELDPNNAEAKQNLG 118
Score = 35.8 bits (81), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 33/131 (25%), Positives = 58/131 (44%), Gaps = 9/131 (6%)
Query: 172 MVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKLAKLYDKLNETEAA 231
M N LG A+ KQ EA++ Y K+ + + +A + L Y K + + A
Sbjct: 3 MDPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEA 62
Query: 232 ADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEA 291
+ + + + +LD P+ ++ L N + K + D A + QK L+ + EA
Sbjct: 63 IEYYQKAL-ELD-----PNNAEAWYN---LGNAYYKQGDYDEAIEYYQKALELDPNNAEA 113
Query: 292 KSLLRSIAQKR 302
K L + QK+
Sbjct: 114 KQNLGNAKQKQ 124
>pdb|3KD7|A Chain A, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|B Chain B, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|C Chain C, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|D Chain D, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|E Chain E, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
Length = 125
Score = 52.0 bits (123), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 55/98 (56%)
Query: 94 QAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQT 153
+A+ Y+Q+AL+L+PN W LG+ Y + + AI+ Y++A+E++ + +AWY G
Sbjct: 27 KAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKAIEYYQKALELDPNNAKAWYRRGNA 86
Query: 154 YEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQ 191
Y + Y++A + PN+ + LG A +KQ
Sbjct: 87 YYKQGDYQKAIEDYQKALELDPNNAKAKQNLGNAKQKQ 124
Score = 44.7 bits (104), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 48/93 (51%)
Query: 112 VWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAH 171
W LG+ Y + + AI+ Y++A+E++ + AWY LG Y + YY++A
Sbjct: 11 AWKNLGNAYYKQGDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKAIEYYQKAL 70
Query: 172 MVRPNDPRMLTALGEAFEKQEKISEAMKCYNKS 204
+ PN+ + G A+ KQ +A++ Y K+
Sbjct: 71 ELDPNNAKAWYRRGNAYYKQGDYQKAIEDYQKA 103
Score = 31.6 bits (70), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 49/109 (44%), Gaps = 1/109 (0%)
Query: 146 AWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSR 205
AW LG Y + YY++A + PN+ LG A+ KQ +A++ Y K+
Sbjct: 11 AWKNLGNAYYKQGDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKAIEYYQKAL 70
Query: 206 AIGDADGKALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCG 254
+ + KA ++ Y K + + A + + + + +LD A + G
Sbjct: 71 ELDPNNAKAWYRRGNAYYKQGDYQKAIEDYQKAL-ELDPNNAKAKQNLG 118
>pdb|2WQH|A Chain A, Crystal Structure Of Ctpr3y3
Length = 125
Score = 51.2 bits (121), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 54/98 (55%)
Query: 94 QAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQT 153
+A+ Y+Q+AL+L PN W LG+ Y + + + AI+ Y++A+E+ + AWY LG
Sbjct: 27 EAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAWYNLGNA 86
Query: 154 YEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQ 191
Y + YY++A + PN+ LG A +KQ
Sbjct: 87 YYKQGDYDEAIEYYQKALELYPNNAEAKQNLGNAKQKQ 124
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 48/93 (51%)
Query: 112 VWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAH 171
W LG+ Y + + + AI+ Y++A+E+ + AWY LG Y + YY++A
Sbjct: 11 AWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKAL 70
Query: 172 MVRPNDPRMLTALGEAFEKQEKISEAMKCYNKS 204
+ PN+ LG A+ KQ EA++ Y K+
Sbjct: 71 ELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKA 103
Score = 36.2 bits (82), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 42/92 (45%)
Query: 145 RAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKS 204
AWY LG Y + YY++A + PN+ LG A+ KQ EA++ Y K+
Sbjct: 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKA 69
Query: 205 RAIGDADGKALFKLAKLYDKLNETEAAADLFM 236
+ + +A + L Y K + + A + +
Sbjct: 70 LELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQ 101
Score = 33.5 bits (75), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 57/132 (43%), Gaps = 11/132 (8%)
Query: 172 MVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKLAKLYDKLNETEAA 231
M N LG A+ KQ EA++ Y K+ + + +A + L Y K + + A
Sbjct: 3 MDPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEA 62
Query: 232 ADLFMEFVSK-LDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEE 290
+E+ K L+ + P+ ++ L N + K + D A + QK L+ E
Sbjct: 63 ----IEYYQKALELY---PNNAEAWYN---LGNAYYKQGDYDEAIEYYQKALELYPNNAE 112
Query: 291 AKSLLRSIAQKR 302
AK L + QK+
Sbjct: 113 AKQNLGNAKQKQ 124
>pdb|3PE3|A Chain A, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE3|B Chain B, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE3|C Chain C, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE3|D Chain D, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE4|A Chain A, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE4|C Chain C, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3TAX|A Chain A, A Neutral Diphosphate Mimic Crosslinks The Active Site Of
Human O- Glcnac Transferase
pdb|3TAX|C Chain C, A Neutral Diphosphate Mimic Crosslinks The Active Site Of
Human O- Glcnac Transferase
pdb|4AY5|A Chain A, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY5|B Chain B, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY5|C Chain C, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY5|D Chain D, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY6|A Chain A, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4AY6|B Chain B, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4AY6|C Chain C, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4AY6|D Chain D, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4GYW|A Chain A, Crystal Structure Of Human O-Glcnac Transferase In Complex
With Udp And A Glycopeptide
pdb|4GYW|C Chain C, Crystal Structure Of Human O-Glcnac Transferase In Complex
With Udp And A Glycopeptide
pdb|4GYY|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac And A Peptide Substrate
pdb|4GYY|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac And A Peptide Substrate
pdb|4GZ3|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With Udp
And A Thioglycopeptide
pdb|4GZ3|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With Udp
And A Thioglycopeptide
pdb|4GZ5|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ5|B Chain B, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ5|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ5|D Chain D, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ6|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
pdb|4GZ6|B Chain B, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
pdb|4GZ6|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
pdb|4GZ6|D Chain D, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
Length = 723
Score = 47.8 bits (112), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 55/96 (57%), Gaps = 3/96 (3%)
Query: 45 LANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDESSSQAVLYFQRALK 104
LAN + N++ A + +K L+ A S L S+ Q++ +A+++++ A++
Sbjct: 15 LANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQG---KLQEALMHYKEAIR 71
Query: 105 LNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEIN 140
++P + ++ +G+ EM++ A+QCY +AI+IN
Sbjct: 72 ISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQIN 107
Score = 34.3 bits (77), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 49/112 (43%), Gaps = 1/112 (0%)
Query: 122 EMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRML 181
E N A++ YR+A+E+ A L + L +YK+A + P
Sbjct: 21 EQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAY 80
Query: 182 TALGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKLAKLY-DKLNETEAAA 232
+ +G ++ + + A++CY ++ I A A LA ++ D N EA A
Sbjct: 81 SNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIA 132
Score = 28.9 bits (63), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 25/123 (20%), Positives = 53/123 (43%)
Query: 79 LRSIAQKRQPDESSSQAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIE 138
L ++A ++ + +AV +++AL++ P + + L + A+ Y++AI
Sbjct: 12 LNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR 71
Query: 139 INNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAM 198
I+ A+ +G T + ++ L Y +A + P + L + I EA+
Sbjct: 72 ISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAI 131
Query: 199 KCY 201
Y
Sbjct: 132 ASY 134
>pdb|3MA5|A Chain A, Crystal Structure Of The Tetratricopeptide Repeat Domain
Protein Q2s6c5_salrd From Salinibacter Ruber. Northeast
Structural Genomics Consortium Target Srr115c.
pdb|3MA5|B Chain B, Crystal Structure Of The Tetratricopeptide Repeat Domain
Protein Q2s6c5_salrd From Salinibacter Ruber. Northeast
Structural Genomics Consortium Target Srr115c.
pdb|3MA5|C Chain C, Crystal Structure Of The Tetratricopeptide Repeat Domain
Protein Q2s6c5_salrd From Salinibacter Ruber. Northeast
Structural Genomics Consortium Target Srr115c.
pdb|3MA5|D Chain D, Crystal Structure Of The Tetratricopeptide Repeat Domain
Protein Q2s6c5_salrd From Salinibacter Ruber. Northeast
Structural Genomics Consortium Target Srr115c
Length = 100
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 36/59 (61%)
Query: 81 SIAQKRQPDESSSQAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEI 139
++AQ+ +++S+A+ F+ ++ +P+Y+G + LG Y + T+ AI Y Q IE+
Sbjct: 12 ALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70
>pdb|2KCL|A Chain A, Solution Nmr Structure Of Tetratricopeptide Repeat Domain
Protein Sru_0103 From Salinibacter Ruber, Northeast
Structural Genomics Consortium (Nesg) Target Srr115c
pdb|2KCV|A Chain A, Solution Nmr Structure Of Tetratricopeptide Repeat Domain
Protein Sru_0103 From Salinibacter Ruber, Northeast
Structural Genomics Consortium (Nesg) Target Srr115c
Length = 99
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 36/59 (61%)
Query: 81 SIAQKRQPDESSSQAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEI 139
++AQ+ +++S+A+ F+ ++ +P+Y+G + LG Y + T+ AI Y Q IE+
Sbjct: 11 ALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 69
>pdb|1NA3|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA3|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 91
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 42/80 (52%)
Query: 112 VWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAH 171
W LG+ Y + + + AI+ Y++A+E++ + AWY LG Y + YY++A
Sbjct: 11 AWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKAL 70
Query: 172 MVRPNDPRMLTALGEAFEKQ 191
+ PN+ LG A +KQ
Sbjct: 71 ELDPNNAEAKQNLGNAKQKQ 90
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 33/47 (70%)
Query: 94 QAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEIN 140
+A+ Y+Q+AL+L+PN W LG+ Y + + + AI+ Y++A+E++
Sbjct: 27 EAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 73
Score = 32.7 bits (73), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 29/60 (48%)
Query: 145 RAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKS 204
AWY LG Y + YY++A + PN+ LG A+ KQ EA++ Y K+
Sbjct: 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKA 69
>pdb|2AVP|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
Length = 70
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 32/47 (68%)
Query: 94 QAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEIN 140
+A+ Y+Q+AL+L+P W LG+ Y + + + AI+ Y++A+E++
Sbjct: 21 EAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 67
Score = 33.5 bits (75), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 25/43 (58%)
Query: 112 VWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTY 154
W LG+ Y + + + AI+ Y++A+E++ AWY LG Y
Sbjct: 5 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAY 47
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 35/63 (55%), Gaps = 3/63 (4%)
Query: 45 LANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDESSSQAVLYFQRALK 104
L N + K + D A + QK L+ + + EA L + A +Q D +A+ Y+Q+AL+
Sbjct: 9 LGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGN-AYYKQGD--YDEAIEYYQKALE 65
Query: 105 LNP 107
L+P
Sbjct: 66 LDP 68
Score = 28.5 bits (62), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 27/59 (45%)
Query: 146 AWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKS 204
AWY LG Y + YY++A + P LG A+ KQ EA++ Y K+
Sbjct: 5 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKA 63
>pdb|3ASD|A Chain A, Mama R50e Mutant
Length = 200
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/106 (22%), Positives = 55/106 (51%)
Query: 99 FQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILR 158
+R+L P+ + V T+LG Y++++ + A+ + E N +++ + LG + L
Sbjct: 65 LERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLG 124
Query: 159 LPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKS 204
+ +K A +RPN+ ++ A+ ++E+ + EA+ + K+
Sbjct: 125 RFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKA 170
>pdb|1W3B|A Chain A, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase
Reveals Structural Similarities To Importin Alpha.
pdb|1W3B|B Chain B, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase
Reveals Structural Similarities To Importin Alpha
Length = 388
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 37/154 (24%), Positives = 59/154 (38%), Gaps = 34/154 (22%)
Query: 94 QAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQT 153
+AV + RAL L+PN+ V L Y E + AI YR+AIE+
Sbjct: 221 RAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIEL-------------- 266
Query: 154 YEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGK 213
+P+ P L A +++ ++EA CYN + +
Sbjct: 267 --------------------QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHAD 306
Query: 214 ALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAA 247
+L LA + + E A L+ + + FAA
Sbjct: 307 SLNNLANIKREQGNIEEAVRLYRKALEVFPEFAA 340
Score = 35.8 bits (81), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 35/161 (21%), Positives = 63/161 (39%), Gaps = 3/161 (1%)
Query: 95 AVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTY 154
AV + AL+ NP+ V + LG+ + A CY +AIE AW LG +
Sbjct: 120 AVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVF 179
Query: 155 EILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKA 214
+ ++++++A + PN LG ++ A+ Y ++ ++
Sbjct: 180 NAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVV 239
Query: 215 LFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGF 255
LA +Y + + A D + + F PD C
Sbjct: 240 HGNLACVYYEQGLIDLAIDTYRRAIELQPHF---PDAYCNL 277
Score = 34.7 bits (78), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 38/172 (22%), Positives = 72/172 (41%), Gaps = 6/172 (3%)
Query: 33 PDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDESS 92
PD T L++ H + LD + + ++ EA S L ++ ++R
Sbjct: 30 PDNTGVLL---LLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERG---QL 83
Query: 93 SQAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQ 152
+A+ +++ AL+L P+++ + L + + A+Q Y A++ N Y LG
Sbjct: 84 QEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGN 143
Query: 153 TYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKS 204
+ L Y +A +PN + LG F Q +I A+ + K+
Sbjct: 144 LLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKA 195
>pdb|3AS4|A Chain A, Mama Amb-1 C2221
pdb|3AS5|A Chain A, Mama Amb-1 P212121
pdb|3AS5|B Chain B, Mama Amb-1 P212121
Length = 186
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/106 (22%), Positives = 55/106 (51%)
Query: 99 FQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILR 158
+R+L P+ + V T+LG Y++++ + A+ + E N +++ + LG + L
Sbjct: 65 LERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLG 124
Query: 159 LPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKS 204
+ +K A +RPN+ ++ A+ ++E+ + EA+ + K+
Sbjct: 125 RFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKA 170
>pdb|3ASG|A Chain A, Mama D159k Mutant 2
pdb|3ASG|B Chain B, Mama D159k Mutant 2
pdb|3ASH|A Chain A, Mama D159k Mutant 1
pdb|3ASH|B Chain B, Mama D159k Mutant 1
Length = 186
Score = 37.4 bits (85), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 24/106 (22%), Positives = 55/106 (51%)
Query: 99 FQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILR 158
+R+L P+ + V T+LG Y++++ + A+ + E N +++ + LG + L
Sbjct: 65 LERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALKNLG 124
Query: 159 LPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKS 204
+ +K A +RPN+ ++ A+ ++E+ + EA+ + K+
Sbjct: 125 RFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKA 170
>pdb|3VTX|A Chain A, Crystal Structure Of Mama Protein
pdb|3VTX|B Chain B, Crystal Structure Of Mama Protein
pdb|3VTY|A Chain A, Crystal Structure Of Mama
pdb|3VTY|B Chain B, Crystal Structure Of Mama
pdb|3VTY|C Chain C, Crystal Structure Of Mama
pdb|3VTY|D Chain D, Crystal Structure Of Mama
Length = 184
Score = 36.6 bits (83), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 38/78 (48%)
Query: 74 EAKSLLRSIAQKRQPDESSSQAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCY 133
E ++ I K++ A+ +++ LK +PN + LG YM++ N AI+
Sbjct: 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESL 62
Query: 134 RQAIEINNLDYRAWYGLG 151
++ + ++ A+Y LG
Sbjct: 63 KKFVVLDTTSAEAYYILG 80
Score = 35.8 bits (81), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 45/98 (45%), Gaps = 3/98 (3%)
Query: 58 AYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDESSSQAVLYFQRALKLNPNYLGVWTLLG 117
A + +K + + T+ EA +L S DE + A+ QRA+ LN Y + LG
Sbjct: 58 AIESLKKFVVLDTTSAEAYYILGS--ANFMIDEKQA-AIDALQRAIALNTVYADAYYKLG 114
Query: 118 HEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYE 155
Y M + AI+ Y + I I RA+ +G YE
Sbjct: 115 LVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYE 152
>pdb|3AS8|A Chain A, Mama Msr-1 P41212
pdb|3ASF|A Chain A, Mama Msr-1 C2
pdb|3ASF|B Chain B, Mama Msr-1 C2
Length = 186
Score = 36.2 bits (82), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 23/106 (21%), Positives = 54/106 (50%)
Query: 99 FQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILR 158
+R++ P+ + V T+LG Y++++ + A+ + E N +++ + LG + L
Sbjct: 65 LERSIADAPDNIKVATVLGLTYVQVQKYDLAVPLLVKVAEANPVNFNVRFRLGVALDNLG 124
Query: 159 LPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKS 204
+ +K A +RPN+ ++ A+ ++E+ EA+ + K+
Sbjct: 125 RFDEAIDSFKIALGLRPNEGKVHRAIAYSYEQMGSHEEALPHFKKA 170
>pdb|4GA0|A Chain A, Structure Of The N-Terminal Domain Of Nup358
Length = 150
Score = 35.4 bits (80), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 37/70 (52%)
Query: 173 VRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKLAKLYDKLNETEAAA 232
V+ DP+ LG +E +E +A++CY +S + + K+A+L K + T+ A
Sbjct: 60 VQERDPKAHRFLGLLYELEENTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRA 119
Query: 233 DLFMEFVSKL 242
++E +KL
Sbjct: 120 KYWLERAAKL 129
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 19/26 (73%)
Query: 115 LLGHEYMEMKNTNAAIQCYRQAIEIN 140
LG Y +NT+ A++CYR+++E+N
Sbjct: 70 FLGLLYELEENTDKAVECYRRSVELN 95
>pdb|4GA2|A Chain A, Structure Of The N-Terminal Domain Of Nup358
Length = 150
Score = 35.0 bits (79), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 37/70 (52%)
Query: 173 VRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKLAKLYDKLNETEAAA 232
V+ DP+ LG +E +E +A++CY +S + + K+A+L K + T+ A
Sbjct: 60 VQERDPKAHRFLGLLYELEENTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRA 119
Query: 233 DLFMEFVSKL 242
++E +KL
Sbjct: 120 KYWVERAAKL 129
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 19/26 (73%)
Query: 115 LLGHEYMEMKNTNAAIQCYRQAIEIN 140
LG Y +NT+ A++CYR+++E+N
Sbjct: 70 FLGLLYELEENTDKAVECYRRSVELN 95
>pdb|4GA1|A Chain A, Structure Of The N-Terminal Domain Of Nup358
Length = 150
Score = 34.7 bits (78), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 37/70 (52%)
Query: 173 VRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKLAKLYDKLNETEAAA 232
V+ DP+ LG +E +E +A++CY +S + + K+A+L K + T+ A
Sbjct: 60 VQERDPKAHRFLGLLYELEENTDKAVECYRRSVELNPXQKDLVLKIAELLCKNDVTDGRA 119
Query: 233 DLFMEFVSKL 242
++E +KL
Sbjct: 120 KYWVERAAKL 129
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 19/26 (73%)
Query: 115 LLGHEYMEMKNTNAAIQCYRQAIEIN 140
LG Y +NT+ A++CYR+++E+N
Sbjct: 70 FLGLLYELEENTDKAVECYRRSVELN 95
>pdb|1FCH|A Chain A, Crystal Structure Of The Pts1 Complexed To The Tpr Region
Of Human Pex5
pdb|1FCH|B Chain B, Crystal Structure Of The Pts1 Complexed To The Tpr Region
Of Human Pex5
Length = 368
Score = 34.7 bits (78), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 58/135 (42%), Gaps = 11/135 (8%)
Query: 94 QAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQT 153
+AV F AL + PN +W LG + A+ YR+A+E+ R+ Y LG +
Sbjct: 235 KAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGIS 294
Query: 154 YEILRLPYYGLYYYKQA-HMVRPN-DPRMLTALGEAFEKQEKISE----AMKCYNKSRAI 207
L + ++ +A +M R + PR GE E I A+ +S A
Sbjct: 295 CINLGAHREAVEHFLEALNMQRKSRGPR-----GEGGAMSENIWSTLRLALSMLGQSDAY 349
Query: 208 GDADGKALFKLAKLY 222
G AD + L L ++
Sbjct: 350 GAADARDLSTLLTMF 364
Score = 28.5 bits (62), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 29/124 (23%), Positives = 48/124 (38%), Gaps = 12/124 (9%)
Query: 17 DLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAK 76
+LF+ V +LD + PD CG NL Y A C +
Sbjct: 202 ELFLAAV-RLDPTSIDPDVQCGLGVLF----------NLSGEYDKAVDCFTAALSVRPND 250
Query: 77 SLL-RSIAQKRQPDESSSQAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQ 135
LL + S +AV ++RAL+L P Y+ LG + + A++ + +
Sbjct: 251 YLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLE 310
Query: 136 AIEI 139
A+ +
Sbjct: 311 ALNM 314
>pdb|3R9A|B Chain B, Human Alanine-Glyoxylate Aminotransferase In Complex With
The Tpr Domain Of Human Pex5p
pdb|3R9A|D Chain D, Human Alanine-Glyoxylate Aminotransferase In Complex With
The Tpr Domain Of Human Pex5p
Length = 328
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 58/135 (42%), Gaps = 11/135 (8%)
Query: 94 QAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQT 153
+AV F AL + PN +W LG + A+ YR+A+E+ R+ Y LG +
Sbjct: 195 KAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGIS 254
Query: 154 YEILRLPYYGLYYYKQA-HMVRPN-DPRMLTALGEAFEKQEKISE----AMKCYNKSRAI 207
L + ++ +A +M R + PR GE E I A+ +S A
Sbjct: 255 CINLGAHREAVEHFLEALNMQRKSRGPR-----GEGGAMSENIWSTLRLALSMLGQSDAY 309
Query: 208 GDADGKALFKLAKLY 222
G AD + L L ++
Sbjct: 310 GAADARDLSTLLTMF 324
Score = 28.5 bits (62), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 29/124 (23%), Positives = 48/124 (38%), Gaps = 12/124 (9%)
Query: 17 DLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAK 76
+LF+ V +LD + PD CG NL Y A C +
Sbjct: 162 ELFLAAV-RLDPTSIDPDVQCGLGVLF----------NLSGEYDKAVDCFTAALSVRPND 210
Query: 77 SLL-RSIAQKRQPDESSSQAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQ 135
LL + S +AV ++RAL+L P Y+ LG + + A++ + +
Sbjct: 211 YLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLE 270
Query: 136 AIEI 139
A+ +
Sbjct: 271 ALNM 274
>pdb|2C0M|A Chain A, Apo Form Of The Tpr Domain Of The Pex5p Receptor
pdb|2C0M|B Chain B, Apo Form Of The Tpr Domain Of The Pex5p Receptor
pdb|2C0M|C Chain C, Apo Form Of The Tpr Domain Of The Pex5p Receptor
pdb|2C0M|F Chain F, Apo Form Of The Tpr Domain Of The Pex5p Receptor
Length = 319
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 58/135 (42%), Gaps = 11/135 (8%)
Query: 94 QAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQT 153
+AV F AL + PN +W LG + A+ YR+A+E+ R+ Y LG +
Sbjct: 186 KAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGIS 245
Query: 154 YEILRLPYYGLYYYKQA-HMVRPN-DPRMLTALGEAFEKQEKISE----AMKCYNKSRAI 207
L + ++ +A +M R + PR GE E I A+ +S A
Sbjct: 246 CINLGAHREAVEHFLEALNMQRKSRGPR-----GEGGAMSENIWSTLRLALSMLGQSDAY 300
Query: 208 GDADGKALFKLAKLY 222
G AD + L L ++
Sbjct: 301 GAADARDLSTLLTMF 315
Score = 28.5 bits (62), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 29/124 (23%), Positives = 48/124 (38%), Gaps = 12/124 (9%)
Query: 17 DLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAK 76
+LF+ V +LD + PD CG NL Y A C +
Sbjct: 153 ELFLAAV-RLDPTSIDPDVQCGLGVLF----------NLSGEYDKAVDCFTAALSVRPND 201
Query: 77 SLL-RSIAQKRQPDESSSQAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQ 135
LL + S +AV ++RAL+L P Y+ LG + + A++ + +
Sbjct: 202 YLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLE 261
Query: 136 AIEI 139
A+ +
Sbjct: 262 ALNM 265
>pdb|2C0L|A Chain A, Tpr Domain Of Human Pex5p In Complex With Human Mscp2
Length = 305
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 58/135 (42%), Gaps = 11/135 (8%)
Query: 94 QAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQT 153
+AV F AL + PN +W LG + A+ YR+A+E+ R+ Y LG +
Sbjct: 172 KAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGIS 231
Query: 154 YEILRLPYYGLYYYKQA-HMVRPN-DPRMLTALGEAFEKQEKISE----AMKCYNKSRAI 207
L + ++ +A +M R + PR GE E I A+ +S A
Sbjct: 232 CINLGAHREAVEHFLEALNMQRKSRGPR-----GEGGAMSENIWSTLRLALSMLGQSDAY 286
Query: 208 GDADGKALFKLAKLY 222
G AD + L L ++
Sbjct: 287 GAADARDLSTLLTMF 301
Score = 28.5 bits (62), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 29/124 (23%), Positives = 48/124 (38%), Gaps = 12/124 (9%)
Query: 17 DLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAK 76
+LF+ V +LD + PD CG NL Y A C +
Sbjct: 139 ELFLAAV-RLDPTSIDPDVQCGLGVLF----------NLSGEYDKAVDCFTAALSVRPND 187
Query: 77 SLL-RSIAQKRQPDESSSQAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQ 135
LL + S +AV ++RAL+L P Y+ LG + + A++ + +
Sbjct: 188 YLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLE 247
Query: 136 AIEI 139
A+ +
Sbjct: 248 ALNM 251
>pdb|2J9Q|A Chain A, A Novel Conformation For The Tpr Domain Of Pex5p
pdb|2J9Q|B Chain B, A Novel Conformation For The Tpr Domain Of Pex5p
Length = 328
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 58/135 (42%), Gaps = 11/135 (8%)
Query: 94 QAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQT 153
+AV F AL + PN +W LG + A+ YR+A+E+ R+ Y LG +
Sbjct: 195 KAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGIS 254
Query: 154 YEILRLPYYGLYYYKQA-HMVRPN-DPRMLTALGEAFEKQEKISE----AMKCYNKSRAI 207
L + ++ +A +M R + PR GE E I A+ +S A
Sbjct: 255 CINLGAHREAVEHFLEALNMQRKSRGPR-----GEGGAMSENIWSTLRLALSMLGQSDAY 309
Query: 208 GDADGKALFKLAKLY 222
G AD + L L ++
Sbjct: 310 GAADARDLSTLLTMF 324
Score = 28.5 bits (62), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 29/124 (23%), Positives = 48/124 (38%), Gaps = 12/124 (9%)
Query: 17 DLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAK 76
+LF+ V +LD + PD CG NL Y A C +
Sbjct: 162 ELFLAAV-RLDPTSIDPDVQCGLGVLF----------NLSGEYDKAVDCFTAALSVRPND 210
Query: 77 SLL-RSIAQKRQPDESSSQAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQ 135
LL + S +AV ++RAL+L P Y+ LG + + A++ + +
Sbjct: 211 YLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLE 270
Query: 136 AIEI 139
A+ +
Sbjct: 271 ALNM 274
>pdb|3CVQ|A Chain A, Structure Of Peroxisomal Targeting Signal 1 (pts1) Binding
Domain Of Trypanosoma Brucei Peroxin 5 (tbpex5)complexed
To Pts1 Peptide (7- Skl)
Length = 327
Score = 33.5 bits (75), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 27/128 (21%), Positives = 54/128 (42%), Gaps = 5/128 (3%)
Query: 136 AIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKIS 195
A+E+N D + LG Y + ++A +RP+D ++ LG +
Sbjct: 164 ALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQ 223
Query: 196 EAMKCYNKSRAIGDADGKALFKLAKLYDKLNETEAAAD-----LFMEFVSKLDTFAAPPD 250
EA+ YN++ I + ++ +A Y +++ + AA ++M+ T A +
Sbjct: 224 EALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASRE 283
Query: 251 KTCGFFAF 258
T + F
Sbjct: 284 ATRSMWDF 291
Score = 32.7 bits (73), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 43/98 (43%)
Query: 102 ALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPY 161
AL++NPN + LG Y N ++A R+A+E+ D + W LG T P
Sbjct: 164 ALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQ 223
Query: 162 YGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMK 199
L Y +A + P R++ + ++ + A K
Sbjct: 224 EALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAK 261
Score = 29.3 bits (64), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 26/56 (46%)
Query: 99 FQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTY 154
+RA++L P+ +W LG A+ Y +A++IN R Y + +Y
Sbjct: 195 LRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSY 250
>pdb|2XPI|A Chain A, Crystal Structure Of ApcC HETERO-Tetramer Cut9-Hcn1
pdb|2XPI|D Chain D, Crystal Structure Of ApcC HETERO-Tetramer Cut9-Hcn1
Length = 597
Score = 33.5 bits (75), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 24/103 (23%), Positives = 43/103 (41%), Gaps = 7/103 (6%)
Query: 95 AVLYFQRALKLNPN-------YLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAW 147
A+ +FQ AL L + W LGH Y ++K +AAI Q + ++ D
Sbjct: 494 AINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVH 553
Query: 148 YGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEK 190
+ Y ++P + + ++ + PN+ L A E+
Sbjct: 554 TAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRALEE 596
>pdb|3CV0|A Chain A, Structure Of Peroxisomal Targeting Signal 1 (Pts1) Binding
Domain Of Trypanosoma Brucei Peroxin 5 (Tbpex5)complexed
To T. Brucei Phosphoglucoisomerase (Pgi) Pts1 Peptide
pdb|3CVL|A Chain A, Structure Of Peroxisomal Targeting Signal 1 (Pts1) Binding
Domain Of Trypanosoma Brucei Peroxin 5 (Tbpex5)complexed
To T. Brucei Phosphofructokinase (Pfk) Pts1 Peptide
pdb|3CVN|A Chain A, Structure Of Peroxisomal Targeting Signal 1 (Pts1) Binding
Domain Of Trypanosoma Brucei Peroxin 5 (Tbpex5)complexed
To T. Brucei Glyceraldehyde-3-Phosphate Dehydrogenase
(Gapdh) Pts1 Peptide
pdb|3CVP|A Chain A, Structure Of Peroxisomal Targeting Signal 1 (Pts1) Binding
Domain Of Trypanosoma Brucei Peroxin 5 (Tbpex5)complexed
To Pts1 Peptide (10-Skl)
Length = 327
Score = 33.5 bits (75), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 27/128 (21%), Positives = 54/128 (42%), Gaps = 5/128 (3%)
Query: 136 AIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKIS 195
A+E+N D + LG Y + ++A +RP+D ++ LG +
Sbjct: 164 ALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQ 223
Query: 196 EAMKCYNKSRAIGDADGKALFKLAKLYDKLNETEAAAD-----LFMEFVSKLDTFAAPPD 250
EA+ YN++ I + ++ +A Y +++ + AA ++M+ T A +
Sbjct: 224 EALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASRE 283
Query: 251 KTCGFFAF 258
T + F
Sbjct: 284 ATRSMWDF 291
Score = 32.3 bits (72), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 43/98 (43%)
Query: 102 ALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPY 161
AL++NPN + LG Y N ++A R+A+E+ D + W LG T P
Sbjct: 164 ALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQ 223
Query: 162 YGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMK 199
L Y +A + P R++ + ++ + A K
Sbjct: 224 EALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAK 261
Score = 28.9 bits (63), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 26/56 (46%)
Query: 99 FQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTY 154
+RA++L P+ +W LG A+ Y +A++IN R Y + +Y
Sbjct: 195 LRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSY 250
>pdb|1VDX|A Chain A, Crystal Structure Of A Pyrococcus Horikoshii Protein With
Similarities To 2'5' Rna-Ligase
Length = 184
Score = 31.6 bits (70), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 6/46 (13%)
Query: 69 EETAEEAKSLLRSIAQKRQPDESSSQAVLYFQRALKLNPNYLGV-W 113
EE AEE K++L+ IA+K + E + + F NPNY+ V W
Sbjct: 51 EEQAEEIKNILKKIAEKYKKHEVKVKGIGVFP-----NPNYIRVIW 91
>pdb|1VGJ|A Chain A, Crystal Structure Of 2'-5' Rna Ligase From Pyrococcus
Horikoshii
Length = 184
Score = 31.6 bits (70), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 6/46 (13%)
Query: 69 EETAEEAKSLLRSIAQKRQPDESSSQAVLYFQRALKLNPNYLGV-W 113
EE AEE K++L+ IA+K + E + + F NPNY+ V W
Sbjct: 51 EEQAEEIKNILKKIAEKYKKHEVKVKGIGVFP-----NPNYIRVIW 91
>pdb|4ABN|A Chain A, Crystal Structure Of Full Length Mouse Strap (Ttc5)
pdb|4ABN|B Chain B, Crystal Structure Of Full Length Mouse Strap (Ttc5)
Length = 474
Score = 31.6 bits (70), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 46/124 (37%), Gaps = 44/124 (35%)
Query: 74 EAKSL-LRSIAQKRQPDESSSQAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQC 132
EA++L L+ A PD S VL +A+KL P + W LG Y + + +A C
Sbjct: 101 EAQALMLKGKALNVTPDYSPEAEVL-LSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTC 159
Query: 133 Y--------------------RQ----------------------AIEINNLDYRAWYGL 150
+ RQ A++++ LD R+WY L
Sbjct: 160 FSGALTHCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYIL 219
Query: 151 GQTY 154
G Y
Sbjct: 220 GNAY 223
>pdb|3LCA|A Chain A, Structure Of Tom71 Complexed With Hsp70 Ssa1 C Terminal
Tail Indicating Conformational Plasticity
Length = 533
Score = 31.2 bits (69), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 46/108 (42%), Gaps = 4/108 (3%)
Query: 33 PDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDESS 92
P + A Y H NNL A Q+ + T L ++A K E+S
Sbjct: 233 PLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPTPNSYIFLALTLADK----ENS 288
Query: 93 SQAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEIN 140
+ +FQ+A+ LNP Y + G Y +++ A + +++A +N
Sbjct: 289 QEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN 336
>pdb|3FP2|A Chain A, Crystal Structure Of Tom71 Complexed With Hsp82 C-Terminal
Fragment
pdb|3FP3|A Chain A, Crystal Structure Of Tom71
pdb|3FP4|A Chain A, Crystal Structure Of Tom71 Complexed With Ssa1 C-Terminal
Fragment
Length = 537
Score = 31.2 bits (69), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 46/108 (42%), Gaps = 4/108 (3%)
Query: 33 PDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDESS 92
P + A Y H NNL A Q+ + T L ++A K E+S
Sbjct: 237 PLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPTPNSYIFLALTLADK----ENS 292
Query: 93 SQAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEIN 140
+ +FQ+A+ LNP Y + G Y +++ A + +++A +N
Sbjct: 293 QEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN 340
>pdb|4EQF|A Chain A, Trip8b-1a#206-567 Interacting With The Carboxy-Terminal
Seven Residues Of Hcn2
Length = 365
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 28/59 (47%)
Query: 93 SQAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLG 151
++A+ F AL + P +W LG + A++ Y +A+EI R+ Y LG
Sbjct: 230 NRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLG 288
>pdb|1V4L|B Chain B, Crystal Structure Of A Platelet Agglutination Factor
Isolated From The Venom Of Taiwan Habu (Trimeresurus
Mucrosquamatus)
pdb|1V4L|D Chain D, Crystal Structure Of A Platelet Agglutination Factor
Isolated From The Venom Of Taiwan Habu (Trimeresurus
Mucrosquamatus)
pdb|1V4L|F Chain F, Crystal Structure Of A Platelet Agglutination Factor
Isolated From The Venom Of Taiwan Habu (Trimeresurus
Mucrosquamatus)
Length = 125
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 11/35 (31%), Positives = 21/35 (60%)
Query: 115 LLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYG 149
+L H+++ M +N +C ++ + LDY+AW G
Sbjct: 60 ILKHDFVWMGLSNVWNECAKEWSDGTKLDYKAWSG 94
>pdb|2E2E|A Chain A, Tpr Domain Of Nrfg Mediates The Complex Formation Between
Heme Lyase And Formate-Dependent Nitrite Reductase In
Escherichia Coli O157:h7
pdb|2E2E|B Chain B, Tpr Domain Of Nrfg Mediates The Complex Formation Between
Heme Lyase And Formate-Dependent Nitrite Reductase In
Escherichia Coli O157:h7
Length = 177
Score = 28.9 bits (63), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 31/75 (41%), Gaps = 10/75 (13%)
Query: 99 FQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILR 158
Q ++ NP W LLG Y+ + + ++ YRQA+++ G+ E+
Sbjct: 33 LQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR----------GENAELYA 82
Query: 159 LPYYGLYYYKQAHMV 173
LYY HM
Sbjct: 83 ALATVLYYQASQHMT 97
>pdb|4HOQ|A Chain A, Crystal Structure Of Full-length Human Ifit5
Length = 482
Score = 28.1 bits (61), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 37/161 (22%), Positives = 67/161 (41%), Gaps = 13/161 (8%)
Query: 29 FAAPPDKTCGF-FAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQ 87
F A ++ F FA+ LAN + + A +K L+ E ++ K + + Q
Sbjct: 327 FKAAXERDSXFAFAYTDLANXYAEGGQYSNAEDIFRKALRLENITDDHKHQIHYHYGRFQ 386
Query: 88 P--DESSSQAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYR 145
+S + A+ ++ ALK+ + K T+A + + + N LD +
Sbjct: 387 EFHRKSENTAIHHYLEALKVKDR----------SPLRTKLTSALKKLSTKRLCHNALDVQ 436
Query: 146 AWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGE 186
+ LG Y++ YY++A + P + LTAL E
Sbjct: 437 SLSALGFVYKLEGEKRQAAEYYEKAQKIDPENAEFLTALCE 477
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 27.7 bits (60), Expect = 9.8, Method: Composition-based stats.
Identities = 42/149 (28%), Positives = 59/149 (39%), Gaps = 18/149 (12%)
Query: 168 KQAHMVRPNDPRMLTALGEAFE-KQEKISEAMKCYNKSRAIGDADGKALFK-LAKLYDKL 225
KQ +R + AL EA E + E +K Y +I D K K L L+D
Sbjct: 354 KQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDM- 412
Query: 226 NETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHE 285
ETE D+ EFV+K F K+ F+Y H L+ + L T C+Q H
Sbjct: 413 -ETEEVEDILQEFVNKSLLFCDRNGKS-----FRYYL-HDLQVDFL-TEKNCSQLQDLH- 463
Query: 286 ETAEEAKSLLRSIAQKRQPDESSSQPMEC 314
K ++ + QP S +C
Sbjct: 464 ------KKIITQFQRYHQPHTLSPDQEDC 486
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.131 0.388
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,157,643
Number of Sequences: 62578
Number of extensions: 378702
Number of successful extensions: 1281
Number of sequences better than 100.0: 52
Number of HSP's better than 100.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 1132
Number of HSP's gapped (non-prelim): 137
length of query: 349
length of database: 14,973,337
effective HSP length: 100
effective length of query: 249
effective length of database: 8,715,537
effective search space: 2170168713
effective search space used: 2170168713
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)