Query psy9209
Match_columns 349
No_of_seqs 1011 out of 1716
Neff 11.9
Searched_HMMs 46136
Date Fri Aug 16 21:40:53 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9209.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/9209hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4626|consensus 100.0 1.3E-44 2.9E-49 296.9 23.1 307 3-330 191-497 (966)
2 KOG4626|consensus 100.0 3.3E-44 7.2E-49 294.6 21.9 309 3-329 123-462 (966)
3 TIGR00990 3a0801s09 mitochondr 100.0 1.2E-34 2.6E-39 259.1 35.6 242 80-324 335-577 (615)
4 TIGR00990 3a0801s09 mitochondr 100.0 1.2E-34 2.5E-39 259.2 33.6 304 2-327 133-505 (615)
5 PRK15174 Vi polysaccharide exp 100.0 9.1E-33 2E-37 246.4 35.1 295 7-323 87-386 (656)
6 PRK15174 Vi polysaccharide exp 100.0 1E-32 2.2E-37 246.1 33.6 299 4-324 50-353 (656)
7 PRK11447 cellulose synthase su 100.0 1E-32 2.2E-37 261.7 35.4 303 3-323 276-705 (1157)
8 KOG1126|consensus 100.0 3.5E-33 7.6E-38 232.0 23.8 294 10-324 333-626 (638)
9 TIGR02917 PEP_TPR_lipo putativ 100.0 7.9E-32 1.7E-36 253.9 33.1 303 3-328 574-876 (899)
10 PRK11447 cellulose synthase su 100.0 3.3E-31 7.3E-36 251.4 34.6 297 3-317 358-739 (1157)
11 TIGR02917 PEP_TPR_lipo putativ 100.0 3.6E-31 7.9E-36 249.5 33.7 306 2-326 471-807 (899)
12 KOG0547|consensus 100.0 4.9E-31 1.1E-35 211.5 27.3 307 2-320 121-568 (606)
13 PRK11788 tetratricopeptide rep 100.0 2.7E-29 5.9E-34 214.2 34.5 302 2-322 41-355 (389)
14 KOG1155|consensus 100.0 1.7E-29 3.7E-34 201.5 30.1 290 3-303 234-555 (559)
15 KOG1126|consensus 100.0 2.1E-30 4.5E-35 215.6 23.2 267 3-290 360-626 (638)
16 PRK11788 tetratricopeptide rep 100.0 9.8E-29 2.1E-33 210.8 29.8 275 40-326 36-319 (389)
17 PRK09782 bacteriophage N4 rece 100.0 1.8E-28 3.8E-33 224.0 31.5 268 40-323 478-745 (987)
18 KOG1155|consensus 100.0 1E-27 2.2E-32 191.4 28.1 309 1-322 169-540 (559)
19 PRK10049 pgaA outer membrane p 100.0 2.3E-27 5E-32 216.2 34.5 300 3-325 56-463 (765)
20 PRK09782 bacteriophage N4 rece 100.0 5.1E-27 1.1E-31 214.5 34.1 300 5-326 385-714 (987)
21 PRK10049 pgaA outer membrane p 100.0 5.5E-27 1.2E-31 213.7 33.7 310 4-327 23-431 (765)
22 KOG2002|consensus 100.0 6.7E-27 1.4E-31 202.1 29.5 316 2-329 170-536 (1018)
23 KOG0547|consensus 100.0 1.9E-27 4.2E-32 191.0 23.1 278 39-328 115-501 (606)
24 KOG1173|consensus 100.0 4.8E-27 1.1E-31 192.0 25.0 280 40-324 245-524 (611)
25 KOG2002|consensus 100.0 3.3E-27 7.1E-32 204.0 25.3 311 2-329 313-756 (1018)
26 PF13429 TPR_15: Tetratricopep 100.0 4E-28 8.6E-33 196.7 14.0 262 43-318 12-277 (280)
27 KOG2076|consensus 99.9 2.5E-24 5.4E-29 185.1 32.2 294 3-316 146-510 (895)
28 PRK12370 invasion protein regu 99.9 6.5E-25 1.4E-29 193.3 29.3 267 41-319 260-536 (553)
29 KOG1173|consensus 99.9 1.3E-24 2.9E-29 177.9 27.7 279 2-301 250-535 (611)
30 KOG0624|consensus 99.9 8.7E-25 1.9E-29 168.7 24.1 310 3-329 45-381 (504)
31 PF13429 TPR_15: Tetratricopep 99.9 6.9E-27 1.5E-31 189.5 12.9 261 3-284 15-277 (280)
32 KOG1129|consensus 99.9 2.4E-25 5.1E-30 170.7 19.8 277 47-330 187-470 (478)
33 PRK12370 invasion protein regu 99.9 2.3E-24 5.1E-29 189.8 27.3 218 89-317 274-501 (553)
34 TIGR00540 hemY_coli hemY prote 99.9 4.2E-23 9E-28 175.6 32.2 295 2-318 90-399 (409)
35 COG3063 PilF Tfp pilus assembl 99.9 7.3E-24 1.6E-28 155.0 21.6 205 111-324 36-242 (250)
36 KOG0495|consensus 99.9 1.3E-22 2.7E-27 169.1 30.5 308 8-328 562-890 (913)
37 PRK11189 lipoprotein NlpI; Pro 99.9 2.8E-23 6.1E-28 168.5 26.3 242 49-304 36-286 (296)
38 PRK10747 putative protoheme IX 99.9 1.7E-22 3.8E-27 170.9 31.5 293 3-319 91-391 (398)
39 KOG1129|consensus 99.9 2E-24 4.3E-29 165.7 17.7 281 5-299 188-473 (478)
40 KOG1174|consensus 99.9 2.2E-23 4.8E-28 164.6 23.8 276 40-328 233-510 (564)
41 KOG0548|consensus 99.9 7.4E-23 1.6E-27 167.0 26.6 303 3-327 9-464 (539)
42 COG3063 PilF Tfp pilus assembl 99.9 7.3E-23 1.6E-27 149.8 23.3 209 75-292 34-244 (250)
43 PRK11189 lipoprotein NlpI; Pro 99.9 3.2E-23 6.9E-28 168.2 23.6 227 87-326 37-274 (296)
44 KOG2003|consensus 99.9 5.7E-23 1.2E-27 164.7 23.7 275 42-326 422-697 (840)
45 KOG1174|consensus 99.9 2.4E-22 5.3E-27 158.8 26.9 281 3-305 239-521 (564)
46 PRK14574 hmsH outer membrane p 99.9 5.7E-22 1.2E-26 178.2 32.5 146 182-327 331-488 (822)
47 TIGR02521 type_IV_pilW type IV 99.9 1.2E-22 2.6E-27 161.1 24.8 201 110-319 31-233 (234)
48 KOG0624|consensus 99.9 4.3E-22 9.2E-27 154.0 26.2 279 2-298 78-384 (504)
49 KOG1125|consensus 99.9 2.1E-23 4.6E-28 171.5 20.1 255 43-309 289-562 (579)
50 KOG2003|consensus 99.9 4.2E-22 9.2E-27 159.8 26.2 284 2-305 425-710 (840)
51 PRK14574 hmsH outer membrane p 99.9 1.3E-21 2.9E-26 175.9 32.5 273 42-327 105-522 (822)
52 KOG0495|consensus 99.9 1E-21 2.2E-26 163.7 29.2 306 3-330 523-858 (913)
53 KOG0548|consensus 99.9 1.5E-21 3.2E-26 159.4 29.2 294 2-314 42-485 (539)
54 TIGR02521 type_IV_pilW type IV 99.9 6E-22 1.3E-26 157.0 25.0 196 80-284 35-232 (234)
55 KOG4162|consensus 99.9 2.1E-21 4.6E-26 164.7 27.4 311 5-331 403-796 (799)
56 KOG2076|consensus 99.9 8.4E-21 1.8E-25 163.7 30.0 287 40-329 140-489 (895)
57 KOG1840|consensus 99.9 8E-22 1.7E-26 166.1 23.3 247 71-318 194-479 (508)
58 KOG1840|consensus 99.9 5.1E-21 1.1E-25 161.3 27.6 243 40-284 200-479 (508)
59 PLN02789 farnesyltranstransfer 99.9 2.9E-21 6.2E-26 156.1 25.0 205 89-302 50-268 (320)
60 KOG1125|consensus 99.9 2.6E-22 5.5E-27 165.2 18.6 263 2-276 291-563 (579)
61 TIGR00540 hemY_coli hemY prote 99.9 3.8E-20 8.3E-25 157.5 29.9 272 41-324 86-372 (409)
62 PLN02789 farnesyltranstransfer 99.9 5E-20 1.1E-24 149.0 28.1 242 41-294 39-312 (320)
63 COG2956 Predicted N-acetylgluc 99.9 4.3E-19 9.3E-24 136.4 29.6 268 8-295 47-322 (389)
64 COG2956 Predicted N-acetylgluc 99.9 1.2E-19 2.6E-24 139.3 25.6 267 43-322 39-315 (389)
65 PRK10747 putative protoheme IX 99.9 2.6E-19 5.7E-24 151.6 29.9 269 41-324 86-363 (398)
66 PLN03218 maturation of RBCL 1; 99.9 1.9E-18 4.1E-23 159.9 35.3 293 5-320 481-785 (1060)
67 KOG0550|consensus 99.9 9E-21 1.9E-25 150.0 16.2 275 39-321 49-353 (486)
68 PLN03218 maturation of RBCL 1; 99.9 3.4E-18 7.3E-23 158.2 35.2 291 5-318 446-748 (1060)
69 KOG4162|consensus 99.9 7E-19 1.5E-23 149.6 27.8 304 6-329 333-760 (799)
70 PLN03081 pentatricopeptide (PP 99.9 1.2E-19 2.6E-24 165.3 25.2 286 4-319 267-558 (697)
71 KOG0550|consensus 99.9 3.3E-20 7.1E-25 146.9 18.2 264 3-287 56-353 (486)
72 KOG1156|consensus 99.9 3.6E-18 7.7E-23 142.7 29.2 307 7-325 18-441 (700)
73 cd05804 StaR_like StaR_like; a 99.9 6.8E-18 1.5E-22 142.3 30.6 308 2-319 12-337 (355)
74 PLN03081 pentatricopeptide (PP 99.8 7.7E-18 1.7E-22 153.5 28.9 300 4-326 197-531 (697)
75 TIGR03302 OM_YfiO outer membra 99.8 2.8E-18 6.1E-23 135.8 21.8 189 106-320 29-234 (235)
76 KOG1127|consensus 99.8 6.5E-19 1.4E-23 153.4 18.7 299 10-327 472-888 (1238)
77 KOG1130|consensus 99.8 6E-19 1.3E-23 140.0 15.2 305 2-314 23-380 (639)
78 PLN03077 Protein ECB2; Provisi 99.8 3.6E-17 7.9E-22 152.6 27.8 188 113-317 527-719 (857)
79 TIGR03302 OM_YfiO outer membra 99.8 1.3E-17 2.9E-22 131.9 21.2 194 33-243 27-234 (235)
80 PRK15359 type III secretion sy 99.8 2.4E-18 5.3E-23 123.8 15.3 126 96-224 13-138 (144)
81 PLN03077 Protein ECB2; Provisi 99.8 9.9E-17 2.1E-21 149.7 29.6 295 4-327 331-695 (857)
82 KOG1127|consensus 99.8 1.9E-17 4.1E-22 144.5 20.7 266 40-318 563-913 (1238)
83 KOG1156|consensus 99.8 1.9E-16 4.2E-21 132.5 25.5 249 40-300 8-264 (700)
84 cd05804 StaR_like StaR_like; a 99.8 1.3E-16 2.9E-21 134.5 24.8 272 40-318 7-293 (355)
85 PRK15359 type III secretion sy 99.8 1.4E-17 3E-22 119.9 15.9 127 130-268 13-139 (144)
86 PF12569 NARP1: NMDA receptor- 99.8 1.1E-15 2.4E-20 130.8 29.6 272 2-284 10-334 (517)
87 KOG3060|consensus 99.8 1.9E-15 4.1E-20 112.7 26.1 206 52-266 25-236 (289)
88 KOG1915|consensus 99.8 2.1E-14 4.6E-19 116.4 31.1 290 7-318 84-500 (677)
89 PRK10370 formate-dependent nit 99.8 2.2E-16 4.8E-21 119.7 18.7 155 45-213 22-179 (198)
90 KOG1130|consensus 99.8 1.2E-17 2.6E-22 132.7 11.9 274 42-318 20-344 (639)
91 PRK10370 formate-dependent nit 99.7 3.2E-16 6.9E-21 118.9 18.2 151 83-244 23-176 (198)
92 KOG3060|consensus 99.7 4.8E-15 1E-19 110.6 22.5 185 105-298 47-234 (289)
93 COG5010 TadD Flp pilus assembl 99.7 1.3E-15 2.9E-20 114.5 19.5 177 94-280 51-227 (257)
94 COG5010 TadD Flp pilus assembl 99.7 1.1E-15 2.4E-20 115.0 19.0 178 127-314 50-227 (257)
95 COG3071 HemY Uncharacterized e 99.7 1.2E-13 2.5E-18 109.9 30.2 261 42-318 87-390 (400)
96 PRK14720 transcript cleavage f 99.7 2.7E-15 5.8E-20 134.3 22.4 253 40-327 32-315 (906)
97 PRK15179 Vi polysaccharide bio 99.7 4.2E-15 9.1E-20 132.0 23.2 154 91-244 67-220 (694)
98 COG3071 HemY Uncharacterized e 99.7 1.7E-13 3.7E-18 109.0 28.2 254 7-284 95-390 (400)
99 PRK04841 transcriptional regul 99.7 1.2E-13 2.6E-18 130.7 31.4 316 3-323 416-765 (903)
100 PRK15179 Vi polysaccharide bio 99.7 9.6E-15 2.1E-19 129.7 22.1 144 136-288 78-221 (694)
101 TIGR02552 LcrH_SycD type III s 99.7 2.6E-15 5.6E-20 108.0 15.1 117 97-213 4-120 (135)
102 PF12569 NARP1: NMDA receptor- 99.7 3.5E-13 7.5E-18 115.7 29.7 269 40-320 5-336 (517)
103 PRK14720 transcript cleavage f 99.7 1.9E-14 4.1E-19 128.9 22.1 197 40-283 66-282 (906)
104 KOG1128|consensus 99.7 1E-14 2.2E-19 124.1 18.7 220 39-285 398-617 (777)
105 TIGR02552 LcrH_SycD type III s 99.7 4.3E-15 9.3E-20 106.8 14.5 113 132-244 5-117 (135)
106 KOG1128|consensus 99.7 4E-14 8.6E-19 120.6 22.2 215 2-244 404-619 (777)
107 KOG2376|consensus 99.7 2.2E-13 4.7E-18 113.5 25.5 287 5-316 21-403 (652)
108 KOG1915|consensus 99.7 1.6E-12 3.5E-17 105.7 29.3 307 6-329 217-546 (677)
109 KOG0553|consensus 99.6 1.3E-14 2.8E-19 111.4 14.8 119 145-272 82-200 (304)
110 PF04733 Coatomer_E: Coatomer 99.6 1.6E-14 3.4E-19 115.8 15.8 257 47-323 9-270 (290)
111 PF04733 Coatomer_E: Coatomer 99.6 4.2E-14 9.1E-19 113.4 18.0 260 4-292 9-273 (290)
112 PRK15363 pathogenicity island 99.6 4.1E-14 8.9E-19 99.6 15.5 107 102-208 26-133 (157)
113 KOG3785|consensus 99.6 3E-13 6.6E-18 106.1 21.7 296 3-314 64-453 (557)
114 KOG0553|consensus 99.6 1.8E-14 3.9E-19 110.6 13.1 119 111-229 82-200 (304)
115 KOG2376|consensus 99.6 5.5E-12 1.2E-16 105.3 28.0 135 193-329 356-498 (652)
116 KOG1941|consensus 99.6 6E-13 1.3E-17 104.6 20.3 301 6-315 16-357 (518)
117 PRK04841 transcriptional regul 99.6 3.4E-12 7.4E-17 120.9 29.7 279 2-287 458-763 (903)
118 PRK15363 pathogenicity island 99.6 2.2E-13 4.8E-18 96.0 15.8 108 136-243 26-134 (157)
119 PRK10866 outer membrane biogen 99.5 5.6E-12 1.2E-16 98.8 21.6 166 110-281 32-238 (243)
120 COG4783 Putative Zn-dependent 99.5 8.2E-12 1.8E-16 102.3 22.5 153 107-285 303-455 (484)
121 PF13525 YfiO: Outer membrane 99.5 6.3E-12 1.4E-16 96.3 20.5 160 110-275 5-198 (203)
122 COG4783 Putative Zn-dependent 99.5 1E-11 2.2E-16 101.7 21.3 143 140-291 302-444 (484)
123 KOG3785|consensus 99.5 1.5E-11 3.2E-16 96.8 21.2 288 6-315 32-342 (557)
124 PLN03088 SGT1, suppressor of 99.5 9E-13 2E-17 109.7 15.2 108 115-222 7-114 (356)
125 KOG1941|consensus 99.5 1.5E-11 3.3E-16 96.9 20.5 275 42-319 9-321 (518)
126 PLN03088 SGT1, suppressor of 99.5 1.3E-12 2.9E-17 108.7 14.8 112 182-302 6-117 (356)
127 KOG4340|consensus 99.5 1.1E-11 2.4E-16 95.2 18.3 275 7-303 21-324 (459)
128 KOG4340|consensus 99.5 4.6E-12 9.9E-17 97.3 15.5 275 49-329 20-316 (459)
129 KOG2047|consensus 99.5 5.7E-10 1.2E-14 94.5 28.2 299 3-316 255-613 (835)
130 KOG2047|consensus 99.5 8.7E-10 1.9E-14 93.4 29.2 301 7-318 358-687 (835)
131 PRK10866 outer membrane biogen 99.5 5.7E-11 1.2E-15 93.1 21.0 178 40-237 33-237 (243)
132 PF14938 SNAP: Soluble NSF att 99.4 2E-11 4.4E-16 98.7 17.0 197 90-291 49-273 (282)
133 PF13525 YfiO: Outer membrane 99.4 2.9E-11 6.4E-16 92.6 17.0 175 40-231 6-197 (203)
134 PF14938 SNAP: Soluble NSF att 99.4 8.9E-11 1.9E-15 95.0 20.5 229 14-243 2-268 (282)
135 COG4235 Cytochrome c biogenesi 99.4 1.9E-11 4.1E-16 94.9 15.2 118 92-209 138-258 (287)
136 TIGR02795 tol_pal_ybgF tol-pal 99.4 1.6E-11 3.4E-16 86.2 13.4 104 111-214 3-112 (119)
137 TIGR02795 tol_pal_ybgF tol-pal 99.4 1.6E-11 3.5E-16 86.1 13.1 105 180-290 4-111 (119)
138 cd00189 TPR Tetratricopeptide 99.4 2.4E-11 5.2E-16 81.7 12.5 97 113-209 3-99 (100)
139 PRK02603 photosystem I assembl 99.4 3.5E-11 7.5E-16 90.0 14.2 102 110-211 35-153 (172)
140 PRK02603 photosystem I assembl 99.4 9.2E-11 2E-15 87.7 16.5 118 40-177 36-153 (172)
141 COG4235 Cytochrome c biogenesi 99.4 7.2E-11 1.6E-15 91.7 15.8 122 160-290 138-262 (287)
142 PF13414 TPR_11: TPR repeat; P 99.3 7.4E-12 1.6E-16 78.2 8.2 67 109-175 2-69 (69)
143 CHL00033 ycf3 photosystem I as 99.3 7E-11 1.5E-15 88.0 14.8 98 92-189 15-117 (168)
144 cd00189 TPR Tetratricopeptide 99.3 3.5E-11 7.6E-16 80.8 12.2 98 146-243 2-99 (100)
145 PF09976 TPR_21: Tetratricopep 99.3 1.9E-10 4.2E-15 83.3 16.3 115 123-238 24-144 (145)
146 PRK15331 chaperone protein Sic 99.3 7.8E-11 1.7E-15 83.6 13.6 106 102-207 29-134 (165)
147 CHL00033 ycf3 photosystem I as 99.3 1.1E-10 2.4E-15 87.0 14.9 101 179-288 36-153 (168)
148 PF13414 TPR_11: TPR repeat; P 99.3 1.1E-11 2.3E-16 77.4 8.0 66 178-243 3-69 (69)
149 COG4785 NlpI Lipoprotein NlpI, 99.3 2.5E-10 5.5E-15 83.7 15.6 154 88-242 77-267 (297)
150 PRK10153 DNA-binding transcrip 99.3 2.5E-10 5.3E-15 99.1 18.4 138 106-244 333-485 (517)
151 PF09976 TPR_21: Tetratricopep 99.3 2.1E-10 4.5E-15 83.1 15.3 116 89-205 24-145 (145)
152 PRK11906 transcriptional regul 99.3 2.7E-10 5.9E-15 94.0 17.2 150 90-239 272-434 (458)
153 PF12895 Apc3: Anaphase-promot 99.3 1.1E-11 2.5E-16 80.5 7.5 78 90-168 3-82 (84)
154 COG0457 NrfG FOG: TPR repeat [ 99.3 6.9E-09 1.5E-13 82.7 25.2 224 52-287 36-268 (291)
155 KOG1070|consensus 99.3 9E-10 2E-14 100.8 21.1 215 96-318 1444-1663(1710)
156 PF12895 Apc3: Anaphase-promot 99.3 2.2E-11 4.8E-16 79.1 8.2 81 123-204 2-84 (84)
157 COG3898 Uncharacterized membra 99.3 1.5E-07 3.3E-12 75.6 30.8 289 8-323 96-396 (531)
158 PRK10153 DNA-binding transcrip 99.3 5E-10 1.1E-14 97.2 18.1 123 90-213 356-488 (517)
159 KOG0543|consensus 99.3 2E-10 4.3E-15 92.5 14.3 133 112-244 210-358 (397)
160 KOG1070|consensus 99.3 1.4E-08 3E-13 93.4 27.2 198 41-242 1460-1664(1710)
161 PRK15331 chaperone protein Sic 99.3 4.9E-10 1.1E-14 79.6 13.7 105 137-241 30-134 (165)
162 PF13432 TPR_16: Tetratricopep 99.3 4.1E-11 9E-16 73.7 7.5 62 116-177 3-64 (65)
163 PRK11906 transcriptional regul 99.2 9.8E-10 2.1E-14 90.8 17.2 146 160-314 274-432 (458)
164 COG0457 NrfG FOG: TPR repeat [ 99.2 1.6E-08 3.6E-13 80.5 24.5 224 90-321 37-268 (291)
165 COG4785 NlpI Lipoprotein NlpI, 99.2 6.1E-10 1.3E-14 81.8 14.1 104 110-213 65-168 (297)
166 PRK10803 tol-pal system protei 99.2 5.1E-10 1.1E-14 88.4 14.9 110 178-293 142-255 (263)
167 PF13432 TPR_16: Tetratricopep 99.2 5.8E-11 1.3E-15 73.0 7.1 62 150-211 3-64 (65)
168 COG4105 ComL DNA uptake lipopr 99.2 1.8E-08 3.9E-13 76.9 21.1 165 109-279 33-228 (254)
169 KOG0543|consensus 99.2 5.7E-10 1.2E-14 89.9 13.7 129 147-284 211-355 (397)
170 KOG3081|consensus 99.2 4.6E-08 9.9E-13 74.5 22.4 254 47-323 16-276 (299)
171 PF12688 TPR_5: Tetratrico pep 99.2 1.4E-09 2.9E-14 74.5 12.8 96 111-206 2-103 (120)
172 PF09295 ChAPs: ChAPs (Chs5p-A 99.2 1.3E-09 2.7E-14 90.6 15.2 120 116-238 175-294 (395)
173 PRK10803 tol-pal system protei 99.2 1.8E-09 3.9E-14 85.3 15.3 103 111-213 143-252 (263)
174 PF09295 ChAPs: ChAPs (Chs5p-A 99.2 1.7E-09 3.7E-14 89.8 15.5 120 84-206 177-296 (395)
175 KOG3617|consensus 99.1 3E-08 6.5E-13 86.8 22.0 259 44-315 805-1171(1416)
176 KOG3081|consensus 99.1 4.2E-07 9.1E-12 69.4 25.4 255 4-290 16-277 (299)
177 KOG4648|consensus 99.1 1.3E-10 2.7E-15 91.2 6.9 232 80-329 101-341 (536)
178 COG4700 Uncharacterized protei 99.1 4E-08 8.7E-13 70.6 18.3 149 122-281 68-219 (251)
179 COG4105 ComL DNA uptake lipopr 99.1 6.4E-08 1.4E-12 73.9 19.8 104 40-143 35-149 (254)
180 COG4700 Uncharacterized protei 99.1 3.5E-08 7.5E-13 71.0 16.9 150 90-241 70-222 (251)
181 PF12688 TPR_5: Tetratrico pep 99.1 7.3E-09 1.6E-13 71.0 12.3 97 41-137 3-102 (120)
182 COG3898 Uncharacterized membra 99.1 5.9E-07 1.3E-11 72.3 24.4 256 2-284 126-392 (531)
183 PF14559 TPR_19: Tetratricopep 99.0 1.1E-09 2.3E-14 68.1 7.0 64 156-219 3-66 (68)
184 PF14559 TPR_19: Tetratricopep 99.0 9.8E-10 2.1E-14 68.3 6.7 62 90-151 5-66 (68)
185 KOG4648|consensus 99.0 1.8E-10 3.9E-15 90.4 3.8 235 42-297 100-343 (536)
186 KOG3617|consensus 99.0 3.3E-07 7.2E-12 80.5 22.7 71 211-281 1079-1171(1416)
187 PF13371 TPR_9: Tetratricopept 99.0 3.9E-09 8.5E-14 66.6 8.0 63 118-180 3-65 (73)
188 PF13371 TPR_9: Tetratricopept 99.0 4.7E-09 1E-13 66.2 8.3 68 151-218 2-69 (73)
189 KOG2471|consensus 99.0 2.7E-06 5.8E-11 70.6 25.5 275 40-315 241-681 (696)
190 COG1729 Uncharacterized protei 99.0 3.3E-08 7.1E-13 76.2 13.6 106 181-292 144-252 (262)
191 KOG2053|consensus 98.9 1.3E-06 2.9E-11 77.4 24.4 226 89-322 22-259 (932)
192 KOG4234|consensus 98.9 3.5E-08 7.6E-13 71.8 12.2 109 113-221 98-211 (271)
193 PF13512 TPR_18: Tetratricopep 98.9 8.8E-08 1.9E-12 66.7 13.5 84 110-193 10-99 (142)
194 COG1729 Uncharacterized protei 98.9 1.7E-08 3.6E-13 77.8 10.5 107 42-148 144-253 (262)
195 KOG4234|consensus 98.9 5E-08 1.1E-12 71.0 12.2 98 147-244 98-200 (271)
196 PF13512 TPR_18: Tetratricopep 98.9 1.2E-07 2.5E-12 66.1 13.1 107 178-290 10-134 (142)
197 PF13424 TPR_12: Tetratricopep 98.9 6.1E-09 1.3E-13 66.6 6.3 74 209-284 2-75 (78)
198 KOG2796|consensus 98.9 2E-06 4.4E-11 65.7 20.3 185 44-244 127-318 (366)
199 KOG2796|consensus 98.9 4.9E-07 1.1E-11 68.9 16.8 193 114-322 126-319 (366)
200 PF13424 TPR_12: Tetratricopep 98.9 1.3E-08 2.7E-13 65.1 6.9 66 108-173 3-75 (78)
201 KOG2053|consensus 98.8 1.8E-05 3.9E-10 70.6 27.6 224 8-244 21-258 (932)
202 KOG4555|consensus 98.8 4.3E-07 9.4E-12 61.3 13.7 96 184-284 49-144 (175)
203 KOG2471|consensus 98.8 3.1E-06 6.8E-11 70.2 20.3 265 43-320 210-650 (696)
204 KOG4555|consensus 98.8 6.9E-07 1.5E-11 60.4 13.6 86 88-173 55-144 (175)
205 PLN03098 LPA1 LOW PSII ACCUMUL 98.8 3.6E-08 7.8E-13 81.7 9.2 69 105-173 70-141 (453)
206 KOG1585|consensus 98.8 8.5E-07 1.8E-11 66.8 15.4 190 117-310 38-248 (308)
207 KOG1586|consensus 98.8 1.8E-06 3.9E-11 64.7 16.4 131 193-326 88-232 (288)
208 KOG1585|consensus 98.8 6.8E-06 1.5E-10 62.1 19.4 214 32-280 24-252 (308)
209 PLN03098 LPA1 LOW PSII ACCUMUL 98.8 5.1E-08 1.1E-12 80.8 8.9 69 139-207 70-141 (453)
210 PF06552 TOM20_plant: Plant sp 98.7 2E-07 4.2E-12 67.1 10.5 67 92-158 7-83 (186)
211 PF06552 TOM20_plant: Plant sp 98.7 3E-07 6.6E-12 66.2 11.2 94 126-219 7-121 (186)
212 KOG1586|consensus 98.7 3.2E-05 6.9E-10 58.2 21.4 178 49-244 24-227 (288)
213 KOG2610|consensus 98.7 8.8E-06 1.9E-10 64.5 19.2 162 116-282 109-274 (491)
214 KOG2610|consensus 98.7 7.2E-06 1.6E-10 65.0 18.6 154 87-240 114-275 (491)
215 KOG2300|consensus 98.7 0.00013 2.9E-09 60.9 27.2 123 3-133 14-150 (629)
216 PF04184 ST7: ST7 protein; In 98.7 7.4E-06 1.6E-10 68.5 18.7 194 90-295 182-425 (539)
217 PF04184 ST7: ST7 protein; In 98.7 2.7E-05 5.9E-10 65.3 21.9 192 44-241 173-414 (539)
218 PF05843 Suf: Suppressor of fo 98.6 1.8E-06 3.9E-11 69.8 14.2 133 112-244 3-139 (280)
219 PF05843 Suf: Suppressor of fo 98.6 2.7E-06 5.8E-11 68.8 14.9 141 145-291 2-143 (280)
220 KOG2300|consensus 98.6 0.00019 4.1E-09 60.0 24.2 224 51-280 287-552 (629)
221 PF07079 DUF1347: Protein of u 98.6 0.00028 6E-09 58.6 26.4 53 262-315 469-521 (549)
222 PF13281 DUF4071: Domain of un 98.5 5.9E-05 1.3E-09 62.2 20.5 189 109-298 140-348 (374)
223 PF13428 TPR_14: Tetratricopep 98.5 3.9E-07 8.4E-12 50.6 5.2 42 111-152 2-43 (44)
224 PF02259 FAT: FAT domain; Int 98.5 0.00018 4E-09 60.8 24.0 146 176-321 144-341 (352)
225 KOG4642|consensus 98.5 1.5E-06 3.2E-11 65.4 9.5 93 81-173 15-107 (284)
226 KOG4642|consensus 98.5 3.9E-06 8.4E-11 63.1 11.7 87 118-204 18-104 (284)
227 PF02259 FAT: FAT domain; Int 98.4 0.00055 1.2E-08 57.9 25.5 120 140-268 142-305 (352)
228 PF13428 TPR_14: Tetratricopep 98.4 5.4E-07 1.2E-11 50.0 4.7 42 256-297 2-43 (44)
229 PF13281 DUF4071: Domain of un 98.4 0.00019 4.2E-09 59.3 20.4 32 89-120 195-227 (374)
230 KOG3616|consensus 98.3 0.00017 3.8E-09 63.5 19.6 35 289-323 995-1029(1636)
231 PF13431 TPR_17: Tetratricopep 98.3 6.2E-07 1.3E-11 46.3 3.0 32 99-130 2-33 (34)
232 KOG0530|consensus 98.3 0.00071 1.5E-08 52.1 20.5 237 49-295 53-309 (318)
233 PF13431 TPR_17: Tetratricopep 98.3 6.4E-07 1.4E-11 46.2 2.9 32 133-164 2-33 (34)
234 KOG0545|consensus 98.3 1.9E-05 4.1E-10 59.8 11.4 101 144-244 178-296 (329)
235 KOG4507|consensus 98.3 2E-05 4.4E-10 67.1 12.6 101 221-329 616-716 (886)
236 PF10300 DUF3808: Protein of u 98.3 0.00017 3.6E-09 62.8 18.3 154 122-284 200-376 (468)
237 PF10300 DUF3808: Protein of u 98.3 0.00024 5.3E-09 61.8 19.0 119 124-242 247-377 (468)
238 KOG1258|consensus 98.3 0.0024 5.3E-08 55.2 30.5 295 13-327 62-479 (577)
239 KOG0376|consensus 98.2 2.2E-06 4.9E-11 71.1 5.8 109 183-300 9-117 (476)
240 KOG0376|consensus 98.2 3.2E-06 6.9E-11 70.2 6.6 98 89-186 17-114 (476)
241 PF00515 TPR_1: Tetratricopept 98.2 5.7E-06 1.2E-10 43.0 4.7 32 111-142 2-33 (34)
242 PF00515 TPR_1: Tetratricopept 98.1 6.8E-06 1.5E-10 42.7 4.6 34 255-288 1-34 (34)
243 COG3118 Thioredoxin domain-con 98.1 0.00078 1.7E-08 53.0 17.6 153 110-270 134-287 (304)
244 PF08424 NRDE-2: NRDE-2, neces 98.1 0.00055 1.2E-08 56.6 18.0 125 161-285 48-184 (321)
245 KOG0545|consensus 98.1 0.00017 3.7E-09 54.9 13.1 105 110-214 178-300 (329)
246 KOG1550|consensus 98.1 0.0031 6.8E-08 56.4 22.9 276 12-321 228-541 (552)
247 PF07719 TPR_2: Tetratricopept 98.1 1.2E-05 2.6E-10 41.7 4.8 32 111-142 2-33 (34)
248 KOG1914|consensus 98.1 0.0054 1.2E-07 52.5 27.2 54 265-318 411-464 (656)
249 COG3118 Thioredoxin domain-con 98.1 0.00047 1E-08 54.2 15.2 152 85-237 143-297 (304)
250 PF07719 TPR_2: Tetratricopept 98.1 9.9E-06 2.1E-10 42.0 4.3 34 255-288 1-34 (34)
251 KOG1550|consensus 98.1 0.0037 8E-08 56.0 22.9 250 55-319 228-505 (552)
252 COG2976 Uncharacterized protei 98.1 0.0019 4.2E-08 47.6 17.1 115 164-288 72-192 (207)
253 COG2909 MalT ATP-dependent tra 98.0 0.0092 2E-07 54.2 26.3 230 84-315 423-685 (894)
254 KOG1914|consensus 98.0 0.0038 8.3E-08 53.3 20.9 214 98-320 267-503 (656)
255 PF03704 BTAD: Bacterial trans 98.0 0.00041 9E-09 50.3 13.3 63 179-241 63-125 (146)
256 PF03704 BTAD: Bacterial trans 98.0 0.00032 6.9E-09 50.9 12.6 61 111-171 63-123 (146)
257 KOG4507|consensus 98.0 0.00061 1.3E-08 58.5 15.5 102 190-300 619-721 (886)
258 KOG0985|consensus 98.0 0.0032 6.9E-08 57.9 20.5 58 213-280 1280-1337(1666)
259 KOG0530|consensus 98.0 0.0046 1E-07 47.9 18.7 201 90-299 57-269 (318)
260 KOG0985|consensus 97.9 0.017 3.6E-07 53.5 24.2 59 144-207 1104-1162(1666)
261 PF08424 NRDE-2: NRDE-2, neces 97.9 0.0023 5E-08 53.0 17.9 116 127-242 48-184 (321)
262 KOG0551|consensus 97.9 0.00019 4.1E-09 57.1 10.6 101 144-244 81-185 (390)
263 PF08631 SPO22: Meiosis protei 97.9 0.0087 1.9E-07 48.6 24.7 232 6-240 3-274 (278)
264 COG2976 Uncharacterized protei 97.9 0.0017 3.7E-08 47.9 14.1 116 94-210 70-191 (207)
265 KOG3616|consensus 97.9 0.013 2.7E-07 52.4 21.7 143 113-281 664-817 (1636)
266 KOG1258|consensus 97.9 0.015 3.3E-07 50.5 30.9 189 111-303 298-489 (577)
267 KOG1308|consensus 97.8 1.8E-05 3.8E-10 63.0 3.6 92 153-244 123-214 (377)
268 KOG1308|consensus 97.8 2.4E-05 5.2E-10 62.3 4.3 93 117-209 121-213 (377)
269 PF08631 SPO22: Meiosis protei 97.8 0.012 2.7E-07 47.7 24.3 230 49-282 3-273 (278)
270 COG0790 FOG: TPR repeat, SEL1 97.8 0.014 2.9E-07 48.0 22.1 187 47-242 49-267 (292)
271 PF04910 Tcf25: Transcriptiona 97.8 0.0043 9.4E-08 52.0 17.4 142 103-244 33-225 (360)
272 PF13181 TPR_8: Tetratricopept 97.8 6.9E-05 1.5E-09 38.8 4.2 32 256-287 2-33 (34)
273 PF10345 Cohesin_load: Cohesin 97.7 0.035 7.5E-07 50.7 32.8 301 3-307 66-467 (608)
274 KOG0551|consensus 97.7 0.00085 1.9E-08 53.5 11.3 99 111-209 82-184 (390)
275 KOG0890|consensus 97.7 0.038 8.2E-07 55.8 24.1 296 3-319 1390-1732(2382)
276 COG5107 RNA14 Pre-mRNA 3'-end 97.7 0.0093 2E-07 50.0 17.1 212 98-321 290-534 (660)
277 COG2909 MalT ATP-dependent tra 97.7 0.041 8.9E-07 50.3 25.9 237 41-281 417-685 (894)
278 PF13181 TPR_8: Tetratricopept 97.7 0.00011 2.5E-09 37.9 4.3 32 40-71 2-33 (34)
279 KOG1464|consensus 97.7 0.016 3.5E-07 45.3 17.9 217 51-269 39-286 (440)
280 PF10345 Cohesin_load: Cohesin 97.6 0.05 1.1E-06 49.7 29.4 295 13-313 38-428 (608)
281 PF04910 Tcf25: Transcriptiona 97.6 0.0068 1.5E-07 50.9 16.1 146 137-286 33-224 (360)
282 COG0790 FOG: TPR repeat, SEL1 97.5 0.041 8.9E-07 45.2 24.7 181 88-286 53-268 (292)
283 PF13176 TPR_7: Tetratricopept 97.5 0.00025 5.5E-09 37.1 3.7 30 41-70 1-30 (36)
284 KOG1464|consensus 97.5 0.024 5.2E-07 44.3 15.6 193 89-284 40-260 (440)
285 PF13176 TPR_7: Tetratricopept 97.4 0.00026 5.6E-09 37.1 3.6 27 113-139 2-28 (36)
286 KOG2041|consensus 97.4 0.039 8.5E-07 49.0 18.3 119 40-170 693-822 (1189)
287 KOG0890|consensus 97.4 0.2 4.4E-06 51.0 26.8 107 210-327 1668-1793(2382)
288 PF13174 TPR_6: Tetratricopept 97.4 0.00046 1E-08 35.2 4.1 25 149-173 5-29 (33)
289 PF14853 Fis1_TPR_C: Fis1 C-te 97.4 0.0017 3.7E-08 37.1 6.6 45 256-300 2-46 (53)
290 PF09613 HrpB1_HrpK: Bacterial 97.3 0.0089 1.9E-07 43.0 11.2 83 146-228 12-94 (160)
291 PF13174 TPR_6: Tetratricopept 97.3 0.00047 1E-08 35.2 3.6 32 256-287 1-32 (33)
292 PF04781 DUF627: Protein of un 97.3 0.0089 1.9E-07 39.9 10.2 46 196-241 62-107 (111)
293 PF04781 DUF627: Protein of un 97.3 0.0087 1.9E-07 39.9 10.0 46 162-207 62-107 (111)
294 PF09613 HrpB1_HrpK: Bacterial 97.2 0.011 2.4E-07 42.6 10.7 85 213-306 11-95 (160)
295 KOG3783|consensus 97.2 0.12 2.7E-06 44.6 18.3 72 214-287 451-523 (546)
296 KOG3824|consensus 97.2 0.0024 5.3E-08 50.5 7.6 75 114-188 120-194 (472)
297 PF09986 DUF2225: Uncharacteri 97.1 0.014 3E-07 45.0 11.6 72 212-286 118-196 (214)
298 PF14561 TPR_20: Tetratricopep 97.1 0.011 2.3E-07 38.5 9.4 44 166-209 10-53 (90)
299 PF10602 RPN7: 26S proteasome 97.1 0.012 2.6E-07 44.0 10.8 103 179-284 37-142 (177)
300 KOG3824|consensus 97.1 0.0027 5.8E-08 50.3 7.4 72 83-154 123-194 (472)
301 PRK10941 hypothetical protein; 97.1 0.0091 2E-07 47.7 10.6 73 113-185 184-256 (269)
302 PF14561 TPR_20: Tetratricopep 97.1 0.01 2.2E-07 38.6 9.0 64 96-159 8-73 (90)
303 KOG2396|consensus 97.1 0.014 2.9E-07 49.7 11.8 96 92-187 87-183 (568)
304 KOG2396|consensus 97.1 0.018 3.9E-07 49.0 12.4 93 57-152 89-182 (568)
305 PF09986 DUF2225: Uncharacteri 97.0 0.016 3.5E-07 44.7 11.1 64 144-207 118-194 (214)
306 PF14853 Fis1_TPR_C: Fis1 C-te 97.0 0.0043 9.3E-08 35.5 5.8 40 41-80 3-42 (53)
307 PRK10941 hypothetical protein; 97.0 0.012 2.5E-07 47.1 10.3 72 146-217 183-254 (269)
308 COG4976 Predicted methyltransf 97.0 0.00088 1.9E-08 50.5 3.4 74 263-336 3-76 (287)
309 KOG1463|consensus 97.0 0.15 3.3E-06 41.4 23.4 276 3-287 11-319 (411)
310 COG3914 Spy Predicted O-linked 96.9 0.092 2E-06 45.8 15.4 136 55-191 47-189 (620)
311 KOG1538|consensus 96.9 0.081 1.7E-06 46.8 15.0 211 42-281 588-830 (1081)
312 PRK15180 Vi polysaccharide bio 96.9 0.0051 1.1E-07 51.9 7.7 138 190-336 301-438 (831)
313 KOG2422|consensus 96.8 0.26 5.6E-06 43.1 17.2 167 8-175 250-450 (665)
314 KOG1839|consensus 96.8 0.028 6E-07 53.5 12.5 171 113-284 935-1128(1236)
315 KOG3783|consensus 96.8 0.3 6.5E-06 42.4 20.4 224 93-321 250-523 (546)
316 COG3914 Spy Predicted O-linked 96.8 0.2 4.3E-06 43.9 16.4 133 90-222 45-186 (620)
317 TIGR02561 HrpB1_HrpK type III 96.8 0.041 8.9E-07 39.0 10.3 78 151-228 17-94 (153)
318 PRK15180 Vi polysaccharide bio 96.8 0.016 3.5E-07 49.1 9.6 122 89-210 302-423 (831)
319 PF12968 DUF3856: Domain of Un 96.8 0.087 1.9E-06 35.6 11.1 52 120-171 19-82 (144)
320 smart00028 TPR Tetratricopepti 96.7 0.0042 9.1E-08 31.1 4.3 28 181-208 4-31 (34)
321 PF10602 RPN7: 26S proteasome 96.7 0.048 1E-06 40.8 11.3 98 40-137 37-140 (177)
322 KOG2041|consensus 96.7 0.094 2E-06 46.8 14.2 31 106-137 689-719 (1189)
323 smart00028 TPR Tetratricopepti 96.7 0.0033 7.1E-08 31.5 3.7 32 256-287 2-33 (34)
324 PF10579 Rapsyn_N: Rapsyn N-te 96.7 0.014 3E-07 36.1 6.7 64 42-105 9-72 (80)
325 KOG3807|consensus 96.6 0.28 6E-06 39.9 15.1 106 214-326 277-399 (556)
326 TIGR02561 HrpB1_HrpK type III 96.6 0.039 8.4E-07 39.1 9.3 72 122-193 22-93 (153)
327 KOG3364|consensus 96.6 0.1 2.2E-06 36.2 11.0 83 211-301 31-117 (149)
328 PF12968 DUF3856: Domain of Un 96.6 0.12 2.5E-06 35.0 11.0 98 145-242 8-130 (144)
329 KOG2422|consensus 96.6 0.23 5.1E-06 43.3 15.3 155 122-286 250-450 (665)
330 KOG1839|consensus 96.5 0.062 1.3E-06 51.3 12.2 155 89-243 945-1130(1236)
331 KOG4814|consensus 96.4 0.066 1.4E-06 47.1 11.3 97 146-242 356-458 (872)
332 PF12862 Apc5: Anaphase-promot 96.4 0.038 8.3E-07 36.4 7.9 65 7-71 9-73 (94)
333 COG4649 Uncharacterized protei 96.4 0.25 5.4E-06 36.1 14.7 131 90-221 72-209 (221)
334 COG4976 Predicted methyltransf 96.3 0.0089 1.9E-07 45.4 5.0 58 86-143 5-62 (287)
335 KOG4814|consensus 96.2 0.37 7.9E-06 42.8 14.5 97 77-173 355-457 (872)
336 PF12862 Apc5: Anaphase-promot 96.1 0.17 3.7E-06 33.3 9.9 65 222-286 8-72 (94)
337 PRK13184 pknD serine/threonine 96.0 0.87 1.9E-05 43.4 17.3 104 42-146 478-588 (932)
338 PF13374 TPR_10: Tetratricopep 96.0 0.022 4.7E-07 30.7 4.6 29 111-139 3-31 (42)
339 PF04053 Coatomer_WDAD: Coatom 96.0 0.54 1.2E-05 40.9 15.0 45 121-170 329-373 (443)
340 KOG2581|consensus 96.0 0.31 6.8E-06 40.7 12.4 136 8-143 138-280 (493)
341 KOG1538|consensus 96.0 0.76 1.6E-05 41.0 15.3 182 1-204 637-830 (1081)
342 COG5159 RPN6 26S proteasome re 96.0 0.63 1.4E-05 37.1 23.9 270 3-286 10-316 (421)
343 PRK11619 lytic murein transgly 96.0 1.3 2.9E-05 40.7 25.0 120 188-317 251-374 (644)
344 KOG3364|consensus 95.9 0.34 7.3E-06 33.8 11.6 72 110-181 32-108 (149)
345 PF13374 TPR_10: Tetratricopep 95.9 0.02 4.3E-07 30.9 4.1 30 255-284 2-31 (42)
346 PF15015 NYD-SP12_N: Spermatog 95.8 0.24 5.2E-06 41.5 11.1 89 117-205 183-289 (569)
347 KOG1310|consensus 95.8 0.067 1.5E-06 46.0 8.2 85 125-209 389-476 (758)
348 COG5191 Uncharacterized conser 95.7 0.03 6.6E-07 44.7 5.7 86 99-184 96-182 (435)
349 PF04053 Coatomer_WDAD: Coatom 95.6 1.4 3E-05 38.5 16.2 154 89-281 274-428 (443)
350 COG5191 Uncharacterized conser 95.6 0.035 7.6E-07 44.3 5.5 77 70-149 104-181 (435)
351 KOG1310|consensus 95.6 0.092 2E-06 45.3 8.2 84 160-243 390-476 (758)
352 COG2912 Uncharacterized conser 95.5 0.15 3.3E-06 40.3 8.9 70 114-183 185-254 (269)
353 KOG1463|consensus 95.5 1.2 2.5E-05 36.6 21.7 276 43-321 8-319 (411)
354 KOG0529|consensus 95.4 1.3 2.9E-05 37.2 14.3 170 48-217 37-234 (421)
355 PRK13184 pknD serine/threonine 95.4 2.7 5.9E-05 40.3 24.8 98 5-112 484-588 (932)
356 COG4649 Uncharacterized protei 95.3 0.78 1.7E-05 33.7 16.4 122 119-240 67-195 (221)
357 KOG2581|consensus 95.3 0.62 1.3E-05 39.0 11.8 129 154-287 136-279 (493)
358 PF07079 DUF1347: Protein of u 95.3 1.7 3.6E-05 37.3 27.5 191 79-281 301-521 (549)
359 COG5107 RNA14 Pre-mRNA 3'-end 95.2 1.8 3.9E-05 37.1 21.9 217 61-290 290-537 (660)
360 PF10579 Rapsyn_N: Rapsyn N-te 95.0 0.19 4E-06 31.3 6.2 56 7-68 17-72 (80)
361 PF07721 TPR_4: Tetratricopept 94.9 0.048 1E-06 25.9 2.9 24 256-279 2-25 (26)
362 COG3629 DnrI DNA-binding trans 94.9 0.34 7.3E-06 38.9 9.1 65 254-318 152-216 (280)
363 PF11207 DUF2989: Protein of u 94.8 0.77 1.7E-05 34.7 10.3 73 125-198 121-198 (203)
364 PF15015 NYD-SP12_N: Spermatog 94.8 0.43 9.4E-06 40.1 9.7 56 114-169 232-287 (569)
365 PF10516 SHNi-TPR: SHNi-TPR; 94.5 0.11 2.3E-06 27.4 3.8 29 111-139 2-30 (38)
366 COG2912 Uncharacterized conser 94.5 0.86 1.9E-05 36.2 10.3 72 146-217 183-254 (269)
367 PF07721 TPR_4: Tetratricopept 94.5 0.074 1.6E-06 25.2 3.0 22 112-133 3-24 (26)
368 COG3629 DnrI DNA-binding trans 94.4 0.34 7.4E-06 38.9 8.2 80 126-207 137-216 (280)
369 PF07720 TPR_3: Tetratricopept 94.4 0.19 4E-06 26.1 4.5 32 256-287 2-35 (36)
370 PF07720 TPR_3: Tetratricopept 94.2 0.25 5.3E-06 25.7 4.8 20 113-132 4-23 (36)
371 COG3947 Response regulator con 93.5 1.7 3.7E-05 34.9 10.3 60 256-315 280-339 (361)
372 PF10373 EST1_DNA_bind: Est1 D 93.5 0.5 1.1E-05 38.4 8.1 62 95-156 1-62 (278)
373 PF10516 SHNi-TPR: SHNi-TPR; 93.5 0.17 3.8E-06 26.6 3.4 29 256-284 2-30 (38)
374 PF10373 EST1_DNA_bind: Est1 D 93.1 0.67 1.5E-05 37.7 8.3 62 129-190 1-62 (278)
375 PF09670 Cas_Cas02710: CRISPR- 93.0 2.8 6.1E-05 35.9 11.8 60 2-68 137-198 (379)
376 COG3947 Response regulator con 92.5 2.4 5.2E-05 34.1 9.8 53 117-169 286-338 (361)
377 PF04190 DUF410: Protein of un 92.3 5 0.00011 32.3 18.3 34 208-241 136-170 (260)
378 KOG0529|consensus 92.0 7 0.00015 33.2 17.4 154 91-244 44-227 (421)
379 TIGR03504 FimV_Cterm FimV C-te 91.1 0.84 1.8E-05 24.9 4.3 26 43-68 3-28 (44)
380 PF00244 14-3-3: 14-3-3 protei 90.9 6.8 0.00015 31.0 14.2 55 228-283 142-197 (236)
381 COG1747 Uncharacterized N-term 90.9 11 0.00023 33.2 21.5 184 90-287 80-291 (711)
382 PF12854 PPR_1: PPR repeat 90.9 0.95 2.1E-05 23.0 4.3 28 254-281 6-33 (34)
383 smart00386 HAT HAT (Half-A-TPR 90.8 0.79 1.7E-05 22.6 4.1 22 127-148 4-25 (33)
384 PF11817 Foie-gras_1: Foie gra 90.8 4.2 9.1E-05 32.5 10.0 58 180-237 180-243 (247)
385 PF12854 PPR_1: PPR repeat 90.7 0.73 1.6E-05 23.5 3.8 26 110-135 7-32 (34)
386 TIGR03504 FimV_Cterm FimV C-te 90.6 0.69 1.5E-05 25.3 3.7 26 259-284 3-28 (44)
387 PF10255 Paf67: RNA polymerase 90.6 6 0.00013 33.9 11.0 60 147-206 125-192 (404)
388 KOG4014|consensus 90.6 5.7 0.00012 29.6 14.6 109 73-188 34-154 (248)
389 KOG2114|consensus 90.6 13 0.00029 34.8 13.5 51 220-282 498-548 (933)
390 PF13041 PPR_2: PPR repeat fam 90.2 2.1 4.5E-05 24.0 5.9 28 180-207 5-32 (50)
391 PF00244 14-3-3: 14-3-3 protei 90.2 8 0.00017 30.6 14.2 31 42-72 4-34 (236)
392 PF09670 Cas_Cas02710: CRISPR- 90.2 11 0.00024 32.3 13.7 61 113-173 134-198 (379)
393 PF13041 PPR_2: PPR repeat fam 90.1 2.1 4.6E-05 24.0 5.8 32 211-242 2-33 (50)
394 smart00386 HAT HAT (Half-A-TPR 90.0 1.1 2.3E-05 22.1 4.2 27 159-185 2-28 (33)
395 PF11817 Foie-gras_1: Foie gra 89.9 8.8 0.00019 30.7 14.7 85 227-314 153-243 (247)
396 COG4455 ImpE Protein of avirul 89.7 3.1 6.6E-05 32.0 7.6 53 90-142 15-67 (273)
397 PF04190 DUF410: Protein of un 89.6 9.6 0.00021 30.7 19.8 66 108-173 88-170 (260)
398 KOG0686|consensus 89.1 6.7 0.00015 33.2 9.8 96 111-206 151-257 (466)
399 PF08311 Mad3_BUB1_I: Mad3/BUB 89.1 6.1 0.00013 27.7 11.4 43 128-170 81-125 (126)
400 COG4941 Predicted RNA polymera 88.9 12 0.00026 31.0 14.1 152 161-322 213-398 (415)
401 KOG0276|consensus 88.8 12 0.00026 33.7 11.4 46 121-171 648-693 (794)
402 KOG0546|consensus 88.7 0.96 2.1E-05 37.2 4.8 131 44-192 227-357 (372)
403 KOG0128|consensus 88.5 22 0.00047 33.4 19.7 296 7-317 201-525 (881)
404 KOG0546|consensus 88.1 1.5 3.3E-05 36.2 5.5 107 117-223 229-354 (372)
405 PF11207 DUF2989: Protein of u 88.1 9.9 0.00021 29.0 14.4 78 155-233 117-199 (203)
406 KOG4014|consensus 87.9 9.4 0.0002 28.5 15.3 187 40-243 35-235 (248)
407 PF14863 Alkyl_sulf_dimr: Alky 87.5 5.2 0.00011 28.6 7.4 53 255-307 70-122 (141)
408 PF09797 NatB_MDM20: N-acetylt 87.2 9 0.0002 32.7 10.2 128 75-202 182-310 (365)
409 KOG3807|consensus 87.2 16 0.00034 30.3 19.7 185 44-244 189-394 (556)
410 PF01535 PPR: PPR repeat; Int 87.1 1.3 2.7E-05 21.5 3.2 27 41-67 2-28 (31)
411 COG4941 Predicted RNA polymera 86.9 16 0.00036 30.2 17.0 166 126-299 212-409 (415)
412 COG1747 Uncharacterized N-term 86.6 22 0.00048 31.4 24.7 205 109-326 65-296 (711)
413 PF01535 PPR: PPR repeat; Int 86.5 1.5 3.2E-05 21.2 3.2 24 114-137 4-27 (31)
414 PF10255 Paf67: RNA polymerase 86.4 1.8 4E-05 36.9 5.4 69 214-283 124-192 (404)
415 PF12739 TRAPPC-Trs85: ER-Golg 85.6 24 0.00052 30.8 15.0 27 113-139 211-237 (414)
416 KOG1920|consensus 85.6 39 0.00085 33.3 17.2 25 216-240 1003-1027(1265)
417 KOG4279|consensus 85.1 11 0.00023 34.9 9.5 187 109-298 200-409 (1226)
418 KOG0686|consensus 85.1 16 0.00035 31.1 9.9 27 40-66 151-177 (466)
419 TIGR02710 CRISPR-associated pr 83.3 28 0.00061 29.8 12.1 59 2-64 136-196 (380)
420 TIGR00756 PPR pentatricopeptid 83.0 3.1 6.7E-05 20.6 3.6 28 257-284 2-29 (35)
421 PF10952 DUF2753: Protein of u 82.7 13 0.00029 25.6 7.3 59 113-171 4-77 (140)
422 smart00299 CLH Clathrin heavy 82.4 15 0.00033 26.1 14.0 45 157-202 20-64 (140)
423 KOG2063|consensus 82.1 50 0.0011 31.8 15.2 171 113-283 507-712 (877)
424 PF14863 Alkyl_sulf_dimr: Alky 82.1 9 0.0002 27.4 6.6 48 112-159 72-119 (141)
425 PF11846 DUF3366: Domain of un 81.9 6.5 0.00014 30.0 6.4 46 197-243 130-175 (193)
426 KOG2062|consensus 81.0 48 0.001 30.9 18.7 255 8-283 369-634 (929)
427 PHA02537 M terminase endonucle 80.9 25 0.00054 27.6 10.7 19 7-25 94-112 (230)
428 smart00299 CLH Clathrin heavy 80.1 19 0.0004 25.6 13.6 33 90-122 21-53 (140)
429 KOG0687|consensus 79.6 34 0.00074 28.4 11.1 101 144-244 104-213 (393)
430 COG4455 ImpE Protein of avirul 79.5 27 0.00059 27.2 12.7 59 153-211 10-68 (273)
431 PF11846 DUF3366: Domain of un 79.4 8.3 0.00018 29.4 6.3 50 228-287 127-176 (193)
432 PF13226 DUF4034: Domain of un 79.2 33 0.00071 27.9 10.9 137 46-194 7-149 (277)
433 KOG4279|consensus 78.9 32 0.00068 32.1 10.1 179 40-220 202-408 (1226)
434 PRK15490 Vi polysaccharide bio 78.8 21 0.00045 32.4 9.1 49 84-134 50-98 (578)
435 PRK12798 chemotaxis protein; R 78.8 42 0.00092 28.9 20.5 166 111-285 113-287 (421)
436 KOG0276|consensus 78.7 20 0.00043 32.4 8.6 80 112-207 616-695 (794)
437 KOG2114|consensus 78.6 62 0.0013 30.7 21.3 249 5-290 343-596 (933)
438 KOG2758|consensus 78.6 37 0.00079 28.1 17.4 183 94-284 113-317 (432)
439 PRK11619 lytic murein transgly 78.2 60 0.0013 30.4 26.9 194 117-314 248-464 (644)
440 COG5159 RPN6 26S proteasome re 77.9 36 0.00078 27.7 23.6 202 43-244 7-238 (421)
441 PF04090 RNA_pol_I_TF: RNA pol 77.6 30 0.00064 26.5 10.8 32 194-225 158-191 (199)
442 PF10952 DUF2753: Protein of u 76.4 22 0.00049 24.6 6.6 59 182-240 5-78 (140)
443 KOG2561|consensus 76.3 51 0.0011 28.6 10.6 95 113-207 166-296 (568)
444 PF13812 PPR_3: Pentatricopept 76.2 7.7 0.00017 19.1 4.3 26 113-138 4-29 (34)
445 KOG0128|consensus 76.1 72 0.0016 30.2 24.6 203 40-244 114-344 (881)
446 PF06957 COPI_C: Coatomer (COP 76.0 53 0.0011 28.6 11.1 36 257-292 302-337 (422)
447 cd02680 MIT_calpain7_2 MIT: do 75.8 6.8 0.00015 24.4 3.9 17 122-138 18-34 (75)
448 KOG0687|consensus 75.5 46 0.00099 27.7 11.8 100 109-208 103-211 (393)
449 KOG4521|consensus 75.5 90 0.002 31.1 13.1 78 185-272 990-1071(1480)
450 cd02682 MIT_AAA_Arch MIT: doma 74.9 18 0.00038 22.6 6.4 22 117-138 13-34 (75)
451 PF04348 LppC: LppC putative l 74.8 0.96 2.1E-05 40.6 0.0 25 42-66 27-51 (536)
452 cd02682 MIT_AAA_Arch MIT: doma 74.6 18 0.00039 22.6 6.6 18 154-171 16-33 (75)
453 PF12739 TRAPPC-Trs85: ER-Golg 73.8 61 0.0013 28.4 17.7 29 40-68 209-237 (414)
454 cd02680 MIT_calpain7_2 MIT: do 73.7 7.6 0.00016 24.2 3.7 19 266-284 17-35 (75)
455 KOG4151|consensus 72.8 13 0.00029 34.4 6.4 107 42-148 56-165 (748)
456 COG5187 RPN7 26S proteasome re 72.7 51 0.0011 26.9 12.7 124 13-139 92-221 (412)
457 KOG1497|consensus 71.0 59 0.0013 27.0 14.9 59 145-204 104-170 (399)
458 PF04097 Nic96: Nup93/Nic96; 70.7 92 0.002 29.0 13.9 220 89-323 271-538 (613)
459 KOG0889|consensus 68.9 2.2E+02 0.0047 32.6 19.2 45 254-298 2811-2855(3550)
460 PF02064 MAS20: MAS20 protein 68.9 20 0.00044 24.8 5.3 34 42-75 66-99 (121)
461 PHA02537 M terminase endonucle 68.9 23 0.0005 27.8 6.2 34 212-245 169-211 (230)
462 COG5536 BET4 Protein prenyltra 67.7 65 0.0014 26.2 10.7 146 127-281 91-257 (328)
463 cd02679 MIT_spastin MIT: domai 67.7 13 0.00028 23.5 3.9 21 222-242 18-38 (79)
464 KOG0292|consensus 67.3 1.2E+02 0.0027 29.2 11.4 119 183-309 996-1138(1202)
465 PF07219 HemY_N: HemY protein 66.8 37 0.0008 23.0 7.0 50 255-304 59-108 (108)
466 PF12753 Nro1: Nuclear pore co 66.5 32 0.00069 29.4 6.9 30 162-193 336-365 (404)
467 PF08626 TRAPPC9-Trs120: Trans 66.2 1.4E+02 0.003 30.6 12.4 170 110-282 242-472 (1185)
468 PF02064 MAS20: MAS20 protein 64.7 29 0.00062 24.1 5.4 39 257-295 65-103 (121)
469 PRK15490 Vi polysaccharide bio 64.5 85 0.0018 28.7 9.5 79 122-202 20-98 (578)
470 PF05053 Menin: Menin; InterP 64.3 94 0.002 28.1 9.5 46 127-172 296-346 (618)
471 KOG4151|consensus 64.1 48 0.001 31.0 8.0 95 150-244 59-159 (748)
472 PF12753 Nro1: Nuclear pore co 62.4 14 0.00029 31.5 4.1 46 126-173 334-391 (404)
473 PF04348 LppC: LppC putative l 62.3 2.5 5.5E-05 38.0 0.0 95 79-173 27-127 (536)
474 cd02681 MIT_calpain7_1 MIT: do 61.4 28 0.0006 21.8 4.5 20 119-138 15-34 (76)
475 smart00101 14_3_3 14-3-3 homol 61.1 84 0.0018 25.1 17.6 55 228-283 144-199 (244)
476 smart00671 SEL1 Sel1-like repe 60.9 20 0.00043 17.8 3.7 29 256-284 2-34 (36)
477 KOG2063|consensus 60.6 1.7E+02 0.0037 28.5 17.5 161 80-240 508-712 (877)
478 PF05053 Menin: Menin; InterP 60.3 63 0.0014 29.2 7.8 50 13-66 296-345 (618)
479 cd02681 MIT_calpain7_1 MIT: do 59.9 25 0.00054 22.0 4.1 29 256-284 7-35 (76)
480 cd02677 MIT_SNX15 MIT: domain 58.2 43 0.00094 20.9 7.0 13 158-170 20-32 (75)
481 KOG4521|consensus 58.1 2.1E+02 0.0046 28.8 14.8 163 111-285 921-1133(1480)
482 KOG1920|consensus 57.7 2.1E+02 0.0046 28.7 17.5 25 180-204 941-965 (1265)
483 TIGR02710 CRISPR-associated pr 57.3 1.3E+02 0.0028 26.0 13.1 56 114-169 134-196 (380)
484 PF02184 HAT: HAT (Half-A-TPR) 57.1 25 0.00053 17.7 3.4 27 227-263 2-28 (32)
485 TIGR03362 VI_chp_7 type VI sec 55.7 1.2E+02 0.0026 25.2 16.3 149 88-244 111-282 (301)
486 cd00280 TRFH Telomeric Repeat 55.1 47 0.001 25.1 5.3 52 260-312 116-167 (200)
487 PF14929 TAF1_subA: TAF RNA Po 54.8 1.7E+02 0.0037 26.8 14.3 156 126-301 300-467 (547)
488 COG5536 BET4 Protein prenyltra 54.0 1.2E+02 0.0026 24.8 17.7 184 56-239 49-258 (328)
489 PF13226 DUF4034: Domain of un 53.3 1.2E+02 0.0027 24.7 10.9 36 194-229 115-150 (277)
490 COG3014 Uncharacterized protei 52.2 1.5E+02 0.0031 25.1 14.0 28 112-139 127-154 (449)
491 COG4259 Uncharacterized protei 52.1 68 0.0015 21.3 6.2 39 254-292 71-109 (121)
492 smart00745 MIT Microtubule Int 51.4 49 0.0011 20.5 4.6 17 8-24 20-36 (77)
493 PF10938 YfdX: YfdX protein; 50.9 97 0.0021 22.7 9.1 61 180-240 77-145 (155)
494 PF04212 MIT: MIT (microtubule 50.4 55 0.0012 19.8 6.8 24 115-138 10-33 (69)
495 PF09477 Type_III_YscG: Bacter 50.0 79 0.0017 21.5 10.9 74 91-169 21-94 (116)
496 PRK12798 chemotaxis protein; R 49.0 1.8E+02 0.004 25.3 22.4 187 89-281 125-321 (421)
497 PF08238 Sel1: Sel1 repeat; I 48.8 37 0.00079 17.3 4.0 10 127-136 25-34 (39)
498 PRK09687 putative lyase; Provi 48.6 1.5E+02 0.0033 24.3 23.2 187 45-244 74-266 (280)
499 KOG4056|consensus 48.3 53 0.0011 23.3 4.5 34 42-75 84-117 (143)
500 KOG2561|consensus 47.8 1.4E+02 0.003 26.2 7.6 29 255-283 267-295 (568)
No 1
>KOG4626|consensus
Probab=100.00 E-value=1.3e-44 Score=296.90 Aligned_cols=307 Identities=21% Similarity=0.206 Sum_probs=284.1
Q ss_pred hhhHHhhCcHHHHHHHHHHHHHhccccCCCCCcchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhchHHHHHHHHHH
Q psy9209 3 NKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSI 82 (349)
Q Consensus 3 a~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~ 82 (349)
+.++...|..++|..+|.++++..+.. +.+|..+|-.+..+|+.-.|+..|++++.++|+..+++..++.+
T Consensus 191 gnLlka~Grl~ea~~cYlkAi~~qp~f---------AiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV 261 (966)
T KOG4626|consen 191 GNLLKAEGRLEEAKACYLKAIETQPCF---------AIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNV 261 (966)
T ss_pred hHHHHhhcccchhHHHHHHHHhhCCce---------eeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHH
Confidence 456667888888888888888433322 25799999999999999999999999999999999997666655
Q ss_pred HHhcCCCcchHHHHHHHHHHHhhCcccHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHHH
Q psy9209 83 AQKRQPDESSSQAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYY 162 (349)
Q Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~ 162 (349)
|...+.+++|+.+|.+++...|++..++.++|.+|..+|..+-|+..|++++++.|+.++++.++|..+...|+..+
T Consensus 262 ---~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~e 338 (966)
T KOG4626|consen 262 ---YKEARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTE 338 (966)
T ss_pred ---HHHHhcchHHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHH
Confidence 54568999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCChHHHHHHHHHHHHhhCHHHHHHHHHHHHccccccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc
Q psy9209 163 GLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKLAKLYDKLNETEAAADLFMEFVSKL 242 (349)
Q Consensus 163 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 242 (349)
|..+|.+++.+.|+.+++..++|.++.++|++++|..+|+++++..|..+.++.++|.+|.++|++++|+.+|++++.+.
T Consensus 339 a~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~ 418 (966)
T KOG4626|consen 339 AVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIK 418 (966)
T ss_pred HHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHcccCChHHHHHHHHHHHHHcCCCCCchhHHHHhhhcCCCC
Q psy9209 243 DTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDESSSQPMECAVVLDPVP 322 (349)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~ 322 (349)
|. .++++.++|.+|..+|+...|+.+|.+++.++|...+++.+|+.++...|+..+|+..|+++++++|+.
T Consensus 419 P~---------fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDf 489 (966)
T KOG4626|consen 419 PT---------FADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDF 489 (966)
T ss_pred ch---------HHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCC
Confidence 99 899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccccCC
Q psy9209 323 PSTRSSKF 330 (349)
Q Consensus 323 ~~~~~~~~ 330 (349)
+++.-++.
T Consensus 490 pdA~cNll 497 (966)
T KOG4626|consen 490 PDAYCNLL 497 (966)
T ss_pred chhhhHHH
Confidence 99887763
No 2
>KOG4626|consensus
Probab=100.00 E-value=3.3e-44 Score=294.58 Aligned_cols=309 Identities=22% Similarity=0.295 Sum_probs=271.9
Q ss_pred hhhHHhhCcHHHHHHHHHHHHHhccccCCCCCcchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhchHHHHHHHHH-
Q psy9209 3 NKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRS- 81 (349)
Q Consensus 3 a~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~- 81 (349)
|.++...|+++.|+..|+.+++.-+... .+|..+|.++...|+.+.|..+|..+++++|+...+...++.
T Consensus 123 aN~~kerg~~~~al~~y~~aiel~p~fi---------da~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnL 193 (966)
T KOG4626|consen 123 ANILKERGQLQDALALYRAAIELKPKFI---------DAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNL 193 (966)
T ss_pred HHHHHHhchHHHHHHHHHHHHhcCchhh---------HHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHH
Confidence 6778889999999999999994333222 568888888888888888888888888888865544333333
Q ss_pred ------------------------------HHHhcCCCcchHHHHHHHHHHHhhCcccHHHHHHHHHHHHhcCChHHHHH
Q psy9209 82 ------------------------------IAQKRQPDESSSQAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQ 131 (349)
Q Consensus 82 ------------------------------~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 131 (349)
++..+...|+...|+..|+++++++|+..++|+++|.+|...+.++.|+.
T Consensus 194 lka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs 273 (966)
T KOG4626|consen 194 LKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVS 273 (966)
T ss_pred HHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHH
Confidence 23345557888999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhCHHHHHHHHHHHHcccccc
Q psy9209 132 CYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDAD 211 (349)
Q Consensus 132 ~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~ 211 (349)
+|.+++.+.|++..++.++|.+|..+|..+-|+..|++++++.|+.+.++.++|.++...|+..+|..+|.+++.+.|..
T Consensus 274 ~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~h 353 (966)
T KOG4626|consen 274 CYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNH 353 (966)
T ss_pred HHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCCCCCcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHcccCChHHH
Q psy9209 212 GKALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEA 291 (349)
Q Consensus 212 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 291 (349)
+++..++|.++..+|.+++|...|.++++..|. ...++.+||.+|.++|++++|+.+|+.++++.|...++
T Consensus 354 adam~NLgni~~E~~~~e~A~~ly~~al~v~p~---------~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda 424 (966)
T KOG4626|consen 354 ADAMNNLGNIYREQGKIEEATRLYLKALEVFPE---------FAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADA 424 (966)
T ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHhhChh---------hhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHH
Confidence 999999999999999999999999999999998 89999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCCCCchhHHHHhhhcCCCCCCccccC
Q psy9209 292 KSLLRSIAQKRQPDESSSQPMECAVVLDPVPPSTRSSK 329 (349)
Q Consensus 292 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~ 329 (349)
+.++|..+..+|+.+.|+.+|.+++.++|...++..++
T Consensus 425 ~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNL 462 (966)
T KOG4626|consen 425 LSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNL 462 (966)
T ss_pred HHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhH
Confidence 99999999999999999999999999999988887776
No 3
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=100.00 E-value=1.2e-34 Score=259.14 Aligned_cols=242 Identities=12% Similarity=0.065 Sum_probs=214.4
Q ss_pred HHHHHhcCCCcchHHHHHHHHHHHhhCcccHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCC
Q psy9209 80 RSIAQKRQPDESSSQAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRL 159 (349)
Q Consensus 80 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~ 159 (349)
..++..+...|++++|+..+++++.++|....++..+|.++...|++++|+..|+++++.+|+++.+++.+|.++...|+
T Consensus 335 ~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~ 414 (615)
T TIGR00990 335 NLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGE 414 (615)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 33455566679999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhCHHHHHHHHHHHHccccccHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Q psy9209 160 PYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKLAKLYDKLNETEAAADLFMEFV 239 (349)
Q Consensus 160 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 239 (349)
+++|+.+|++++.++|++..++..+|.++..+|++++|+..|++++...|.++.++..+|.++...|++++|+..|++++
T Consensus 415 ~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al 494 (615)
T TIGR00990 415 FAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAI 494 (615)
T ss_pred HHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccccCCCCCCcchHHHHHHHHHH-HHHhCCHHHHHHHHHHHHcccCChHHHHHHHHHHHHHcCCCCCchhHHHHhhhc
Q psy9209 240 SKLDTFAAPPDKTCGFFAFKYLANH-HLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDESSSQPMECAVVL 318 (349)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 318 (349)
.+.|.. .........+...+.. +...|++++|+.++++++.++|++..++..+|.++..+|++++|+.+|++++++
T Consensus 495 ~l~p~~---~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 495 ELEKET---KPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred hcCCcc---ccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 998862 1111122223333333 444799999999999999999999999999999999999999999999999999
Q ss_pred CCCCCC
Q psy9209 319 DPVPPS 324 (349)
Q Consensus 319 ~p~~~~ 324 (349)
.+....
T Consensus 572 ~~~~~e 577 (615)
T TIGR00990 572 ARTEGE 577 (615)
T ss_pred hccHHH
Confidence 876443
No 4
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=100.00 E-value=1.2e-34 Score=259.24 Aligned_cols=304 Identities=11% Similarity=0.078 Sum_probs=264.6
Q ss_pred hhhhHHhhCcHHHHHHHHHHHHHhccccCCCCCcchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhchHHHHHHHHH
Q psy9209 2 RNKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRS 81 (349)
Q Consensus 2 ~a~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~ 81 (349)
+|..+...|++++|+..|++++... |+. ..+..+|.+|...|++++|+..++++++++|++..++..+
T Consensus 133 ~G~~~~~~~~~~~Ai~~y~~al~~~------p~~----~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~-- 200 (615)
T TIGR00990 133 KGNKAYRNKDFNKAIKLYSKAIECK------PDP----VYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRR-- 200 (615)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcC------Cch----HHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHH--
Confidence 4678899999999999999999433 221 4689999999999999999999999999999998885554
Q ss_pred HHHhcCCCcchHHHHHHHHHHHhhCccc------------------------------HHHH------------------
Q psy9209 82 IAQKRQPDESSSQAVLYFQRALKLNPNY------------------------------LGVW------------------ 113 (349)
Q Consensus 82 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~------------------------------~~~~------------------ 113 (349)
+.++...|++++|+..|..+...++.. ...+
T Consensus 201 -a~a~~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (615)
T TIGR00990 201 -ANAYDGLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAG 279 (615)
T ss_pred -HHHHHHcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhh
Confidence 455666799999998776654433211 1111
Q ss_pred ---------------HHHHHHH---HhcCChHHHHHHHHHHHHh---CcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Q psy9209 114 ---------------TLLGHEY---MEMKNTNAAIQCYRQAIEI---NNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHM 172 (349)
Q Consensus 114 ---------------~~la~~~---~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 172 (349)
..++..+ ...+++++|+..|+++++. .|....++..+|.++...|++++|+..+++++.
T Consensus 280 ~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~ 359 (615)
T TIGR00990 280 LEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIE 359 (615)
T ss_pred hhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1111111 1236799999999999986 477788999999999999999999999999999
Q ss_pred cCCCChHHHHHHHHHHHHhhCHHHHHHHHHHHHccccccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCCCCCc
Q psy9209 173 VRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKT 252 (349)
Q Consensus 173 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 252 (349)
++|.....+..+|.++...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..|++++.+.|+
T Consensus 360 l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~-------- 431 (615)
T TIGR00990 360 LDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPD-------- 431 (615)
T ss_pred cCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCcc--------
Confidence 999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred chHHHHHHHHHHHHHhCCHHHHHHHHHHHHcccCChHHHHHHHHHHHHHcCCCCCchhHHHHhhhcCCCCCCccc
Q psy9209 253 CGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDESSSQPMECAVVLDPVPPSTRS 327 (349)
Q Consensus 253 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~ 327 (349)
....+..+|.++..+|++++|+..|++++...|+++.++..+|.++...|++++|+..|+++++++|++.....
T Consensus 432 -~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~ 505 (615)
T TIGR00990 432 -FIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYM 505 (615)
T ss_pred -CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccc
Confidence 78999999999999999999999999999999999999999999999999999999999999999998655443
No 5
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=100.00 E-value=9.1e-33 Score=246.39 Aligned_cols=295 Identities=8% Similarity=-0.035 Sum_probs=197.2
Q ss_pred HhhCcHHHHHHHHHHHHHhccccCCCCCcchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhchHHHHHHHHHHHHhc
Q psy9209 7 DKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKR 86 (349)
Q Consensus 7 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~ 86 (349)
...|++++|+..|++++...|... .++..+|.++...|++++|+..+++++..+|+++.++..++.+ +
T Consensus 87 l~~g~~~~A~~~l~~~l~~~P~~~---------~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~---l 154 (656)
T PRK15174 87 LASSQPDAVLQVVNKLLAVNVCQP---------EDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRT---L 154 (656)
T ss_pred hhcCCHHHHHHHHHHHHHhCCCCh---------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH---H
Confidence 344555555555555552222111 3445555555555555555555555555555554443333322 3
Q ss_pred CCCcchHHHHHHHHHHHhhCcccHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHhCCHHHHHH
Q psy9209 87 QPDESSSQAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINN-LDYRAWYGLGQTYEILRLPYYGLY 165 (349)
Q Consensus 87 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~ 165 (349)
...|++++|+..+++++...|+++.++..++ .+...|++++|+..+++++...| ........++.++...|++++|+.
T Consensus 155 ~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~~-~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~ 233 (656)
T PRK15174 155 VLMDKELQAISLARTQAQEVPPRGDMIATCL-SFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQ 233 (656)
T ss_pred HHCCChHHHHHHHHHHHHhCCCCHHHHHHHH-HHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHH
Confidence 3345555555555555555555544444332 24455555555555555555443 222233445667777788888888
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHHHhhCHHH----HHHHHHHHHccccccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc
Q psy9209 166 YYKQAHMVRPNDPRMLTALGEAFEKQEKISE----AMKCYNKSRAIGDADGKALFKLAKLYDKLNETEAAADLFMEFVSK 241 (349)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~----A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 241 (349)
.+++++...|+++.++..+|.++...|++++ |+..|++++..+|+++.++..+|.++...|++++|+..+++++..
T Consensus 234 ~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l 313 (656)
T PRK15174 234 TGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLAT 313 (656)
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 8888888888888888888888888888875 788888888888888888888888888888888888888888888
Q ss_pred ccccCCCCCCcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHcccCChHHHHHHHHHHHHHcCCCCCchhHHHHhhhcCCC
Q psy9209 242 LDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDESSSQPMECAVVLDPV 321 (349)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~ 321 (349)
.|. .+.++..+|.++...|++++|+..|++++..+|+.......++.++...|++++|+..|+++++.+|+
T Consensus 314 ~P~---------~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~ 384 (656)
T PRK15174 314 HPD---------LPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARAS 384 (656)
T ss_pred CCC---------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChh
Confidence 887 67788888888888888888888888888888887776666778888888888888888888888887
Q ss_pred CC
Q psy9209 322 PP 323 (349)
Q Consensus 322 ~~ 323 (349)
+.
T Consensus 385 ~~ 386 (656)
T PRK15174 385 HL 386 (656)
T ss_pred hc
Confidence 65
No 6
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=100.00 E-value=1e-32 Score=246.08 Aligned_cols=299 Identities=10% Similarity=-0.029 Sum_probs=272.5
Q ss_pred hhHHhhCcHHHHHHHHHHHHHhccccCCCCCcchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhchHHHHHHHHHHH
Q psy9209 4 KLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIA 83 (349)
Q Consensus 4 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~ 83 (349)
....+.|++++|+..++.++...+... .+++.+|.+....|++++|+..+++++..+|+++.++..++
T Consensus 50 ~~~~~~g~~~~A~~l~~~~l~~~p~~~---------~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la--- 117 (656)
T PRK15174 50 IACLRKDETDVGLTLLSDRVLTAKNGR---------DLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVA--- 117 (656)
T ss_pred HHHHhcCCcchhHHHhHHHHHhCCCch---------hHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHH---
Confidence 446788999999999999995443332 57899999999999999999999999999999999866555
Q ss_pred HhcCCCcchHHHHHHHHHHHhhCcccHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHHHH
Q psy9209 84 QKRQPDESSSQAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYG 163 (349)
Q Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A 163 (349)
..+...|++++|+..++++++++|+++.++..+|.++...|++++|+..+++++...|+++.++..++ .+...|++++|
T Consensus 118 ~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~~-~l~~~g~~~eA 196 (656)
T PRK15174 118 SVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATCL-SFLNKSRLPED 196 (656)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHHH-HHHHcCCHHHH
Confidence 44566799999999999999999999999999999999999999999999999999999988887765 47889999999
Q ss_pred HHHHHHHHhcCCC-ChHHHHHHHHHHHHhhCHHHHHHHHHHHHccccccHHHHHHHHHHHHhcCcHHH----HHHHHHHH
Q psy9209 164 LYYYKQAHMVRPN-DPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKLAKLYDKLNETEA----AADLFMEF 238 (349)
Q Consensus 164 ~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~----A~~~~~~~ 238 (349)
+..+++++...|. .......++.++...|++++|+..+++++..+|+++.++..+|.++...|++++ |+..|+++
T Consensus 197 ~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~A 276 (656)
T PRK15174 197 HDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHA 276 (656)
T ss_pred HHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHH
Confidence 9999999998764 344556678899999999999999999999999999999999999999999986 89999999
Q ss_pred HhcccccCCCCCCcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHcccCChHHHHHHHHHHHHHcCCCCCchhHHHHhhhc
Q psy9209 239 VSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDESSSQPMECAVVL 318 (349)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 318 (349)
+...|+ ...++..+|.++...|++++|+..++++++.+|+++.++..++.++...|++++|+..|+++++.
T Consensus 277 l~l~P~---------~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~ 347 (656)
T PRK15174 277 LQFNSD---------NVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLARE 347 (656)
T ss_pred HhhCCC---------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 999998 79999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCC
Q psy9209 319 DPVPPS 324 (349)
Q Consensus 319 ~p~~~~ 324 (349)
+|++..
T Consensus 348 ~P~~~~ 353 (656)
T PRK15174 348 KGVTSK 353 (656)
T ss_pred CccchH
Confidence 998764
No 7
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=100.00 E-value=1e-32 Score=261.68 Aligned_cols=303 Identities=14% Similarity=0.046 Sum_probs=233.2
Q ss_pred hhhHHhhCcHHHHHHHHHHHHHhccccCCCCCcchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhchHHH-------
Q psy9209 3 NKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEA------- 75 (349)
Q Consensus 3 a~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~------- 75 (349)
+.++...|++++|+..|+++++..|... .++..+|.++...|++++|+..|+++++.+|++...
T Consensus 276 G~~~~~~g~~~~A~~~l~~aL~~~P~~~---------~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll 346 (1157)
T PRK11447 276 GLAAVDSGQGGKAIPELQQAVRANPKDS---------EALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLL 346 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCH---------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHH
Confidence 6678889999999999999995433222 578999999999999999999999999998876432
Q ss_pred ----HHHHHHHHHhcCCCcchHHHHHHHHHHHhhCcccHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCcccHHHHHHHH
Q psy9209 76 ----KSLLRSIAQKRQPDESSSQAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLG 151 (349)
Q Consensus 76 ----~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~ 151 (349)
+......+..+...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++.+|.+..++..++
T Consensus 347 ~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~ 426 (1157)
T PRK11447 347 KVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLA 426 (1157)
T ss_pred HhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 1122334556667899999999999999999999999999999999999999999999999999998877665554
Q ss_pred HH------------------------------------------HHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Q psy9209 152 QT------------------------------------------YEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFE 189 (349)
Q Consensus 152 ~~------------------------------------------~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 189 (349)
.+ +...|++++|+..|+++++.+|+++.+++.+|.++.
T Consensus 427 ~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~ 506 (1157)
T PRK11447 427 NLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLR 506 (1157)
T ss_pred HHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 44 445789999999999999999999999999999999
Q ss_pred HhhCHHHHHHHHHHHHccccccHHHHHH----------------------------------------------------
Q psy9209 190 KQEKISEAMKCYNKSRAIGDADGKALFK---------------------------------------------------- 217 (349)
Q Consensus 190 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~---------------------------------------------------- 217 (349)
..|++++|+..++++++..|.++..++.
T Consensus 507 ~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~ 586 (1157)
T PRK11447 507 QAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDS 586 (1157)
T ss_pred HcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHC
Confidence 9999999999999999888876654443
Q ss_pred ----------------------HHHHHHhcCcHHHHHHHHHHHHhcccccCCCCCCcchHHHHHHHHHHHHHhCCHHHHH
Q psy9209 218 ----------------------LAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAY 275 (349)
Q Consensus 218 ----------------------l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 275 (349)
+|.++...|++++|+..|++++...|. ++.++..++.++...|++++|+
T Consensus 587 G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~---------~~~a~~~la~~~~~~g~~~eA~ 657 (1157)
T PRK11447 587 GKEAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPG---------NADARLGLIEVDIAQGDLAAAR 657 (1157)
T ss_pred CCHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---------CHHHHHHHHHHHHHCCCHHHHH
Confidence 444555556666666666666666555 5666666666666666666666
Q ss_pred HHHHHHHcccCChHHHHHHHHHHHHHcCCCCCchhHHHHhhhcCCCCC
Q psy9209 276 KCAQKCLQHEETAEEAKSLLRSIAQKRQPDESSSQPMECAVVLDPVPP 323 (349)
Q Consensus 276 ~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~ 323 (349)
..++++++..|++..++..++.++...|++++|+..|++++...|+++
T Consensus 658 ~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~ 705 (1157)
T PRK11447 658 AQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQP 705 (1157)
T ss_pred HHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCC
Confidence 666666666666666666666666666666666666666666655443
No 8
>KOG1126|consensus
Probab=100.00 E-value=3.5e-33 Score=231.99 Aligned_cols=294 Identities=17% Similarity=0.170 Sum_probs=264.2
Q ss_pred CcHHHHHHHHHHHHHhccccCCCCCcchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhchHHHHHHHHHHHHhcCCC
Q psy9209 10 NETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPD 89 (349)
Q Consensus 10 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ 89 (349)
-+..+|+..|++.-... .++. +++..+|..|+..++|++|..+|+.+-...|-..+....+..+.+-+
T Consensus 333 y~~~~A~~~~~klp~h~-------~nt~--wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHL--- 400 (638)
T KOG1126|consen 333 YNCREALNLFEKLPSHH-------YNTG--WVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHL--- 400 (638)
T ss_pred HHHHHHHHHHHhhHHhc-------CCch--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHH---
Confidence 35678888887732111 1111 78999999999999999999999999999887666655555554443
Q ss_pred cchHHHHHHHHHHHhhCcccHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHHHHHHHHHH
Q psy9209 90 ESSSQAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQ 169 (349)
Q Consensus 90 ~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 169 (349)
.+--+--.+.+..+..+|+.|+.|..+|.+|.-+++++.|+++|++++.++|....+|..+|.-+....+++.|..+|+.
T Consensus 401 q~~v~Ls~Laq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~ 480 (638)
T KOG1126|consen 401 QDEVALSYLAQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRK 480 (638)
T ss_pred HhhHHHHHHHHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHh
Confidence 33333334556778899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCChHHHHHHHHHHHHhhCHHHHHHHHHHHHccccccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCCC
Q psy9209 170 AHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPP 249 (349)
Q Consensus 170 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 249 (349)
++..+|.+-.+|+.+|.+|.++++++.|.-.|++|++++|.+..+...+|.++.+.|+.++|+..|++|+.++|.
T Consensus 481 Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k----- 555 (638)
T KOG1126|consen 481 ALGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK----- 555 (638)
T ss_pred hhcCCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-----
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHcccCChHHHHHHHHHHHHHcCCCCCchhHHHHhhhcCCCCCC
Q psy9209 250 DKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDESSSQPMECAVVLDPVPPS 324 (349)
Q Consensus 250 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~ 324 (349)
++...+..|.+++..+++++|+..+++..++.|+...++..+|.++...|+.+.|+..|.-|..++|.-..
T Consensus 556 ----n~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~~ 626 (638)
T KOG1126|consen 556 ----NPLCKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGAQ 626 (638)
T ss_pred ----CchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccch
Confidence 79999999999999999999999999999999999999999999999999999999999999999998655
No 9
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=7.9e-32 Score=253.95 Aligned_cols=303 Identities=18% Similarity=0.140 Sum_probs=225.1
Q ss_pred hhhHHhhCcHHHHHHHHHHHHHhccccCCCCCcchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhchHHHHHHHHHH
Q psy9209 3 NKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSI 82 (349)
Q Consensus 3 a~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~ 82 (349)
+.++...|++++|+..+++++...+ .. ..+|..+|.++...|++++|+..|+++++..|+++..+..++
T Consensus 574 ~~~~~~~~~~~~A~~~~~~~~~~~~------~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~-- 642 (899)
T TIGR02917 574 AQYYLGKGQLKKALAILNEAADAAP------DS---PEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLA-- 642 (899)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHcCC------CC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHH--
Confidence 3445555566666666555553211 11 145666777777777777777777777776666665543333
Q ss_pred HHhcCCCcchHHHHHHHHHHHhhCcccHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHHH
Q psy9209 83 AQKRQPDESSSQAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYY 162 (349)
Q Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~ 162 (349)
..+...|++++|+..++++++.+|++..++..++.++...|++++|+..++.+.+..|.++..+..+|.++...|++++
T Consensus 643 -~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 721 (899)
T TIGR02917 643 -DAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPA 721 (899)
T ss_pred -HHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHH
Confidence 3344457777777777777777777777777777777777777777777777777777777777777777788888888
Q ss_pred HHHHHHHHHhcCCCChHHHHHHHHHHHHhhCHHHHHHHHHHHHccccccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc
Q psy9209 163 GLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKLAKLYDKLNETEAAADLFMEFVSKL 242 (349)
Q Consensus 163 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 242 (349)
|+..|++++...|++ ..+..++.++...|++++|+..++++++..|++..++..+|.++...|++++|+..|++++...
T Consensus 722 A~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 800 (899)
T TIGR02917 722 AIQAYRKALKRAPSS-QNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA 800 (899)
T ss_pred HHHHHHHHHhhCCCc-hHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC
Confidence 888888888777766 5667778888888888888888888888888888888888888888888888888888888887
Q ss_pred cccCCCCCCcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHcccCChHHHHHHHHHHHHHcCCCCCchhHHHHhhhcCCCC
Q psy9209 243 DTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDESSSQPMECAVVLDPVP 322 (349)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~ 322 (349)
|+ .+.++..+|.++...|+ .+|+.++++++...|+++..+..+|.++...|++++|+.+|+++++.+|.+
T Consensus 801 p~---------~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~ 870 (899)
T TIGR02917 801 PD---------NAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEA 870 (899)
T ss_pred CC---------CHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 77 67888888888888888 778888888888888888888888888888888888888888888888887
Q ss_pred CCcccc
Q psy9209 323 PSTRSS 328 (349)
Q Consensus 323 ~~~~~~ 328 (349)
+.+...
T Consensus 871 ~~~~~~ 876 (899)
T TIGR02917 871 AAIRYH 876 (899)
T ss_pred hHHHHH
Confidence 766543
No 10
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=100.00 E-value=3.3e-31 Score=251.41 Aligned_cols=297 Identities=13% Similarity=0.081 Sum_probs=260.2
Q ss_pred hhhHHhhCcHHHHHHHHHHHHHhccccCCCCCcchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhchHHHHHHHHHH
Q psy9209 3 NKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSI 82 (349)
Q Consensus 3 a~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~ 82 (349)
+.++...|++++|+..|+++++..|... .++..+|.++...|++++|+..|+++++.+|++..++..++.+
T Consensus 358 g~~~~~~g~~~eA~~~~~~Al~~~P~~~---------~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l 428 (1157)
T PRK11447 358 GDAALKANNLAQAERLYQQARQVDNTDS---------YAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANL 428 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCH---------HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 5567789999999999999995433221 5788999999999999999999999999999987765443322
Q ss_pred ---------------------------------------HHhcCCCcchHHHHHHHHHHHhhCcccHHHHHHHHHHHHhc
Q psy9209 83 ---------------------------------------AQKRQPDESSSQAVLYFQRALKLNPNYLGVWTLLGHEYMEM 123 (349)
Q Consensus 83 ---------------------------------------~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~ 123 (349)
+..+...|++++|+..|+++++.+|+++.+++.+|.++...
T Consensus 429 ~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~ 508 (1157)
T PRK11447 429 YRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQA 508 (1157)
T ss_pred HHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 23344579999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHHHHHHHHHHH---------------------------------
Q psy9209 124 KNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQA--------------------------------- 170 (349)
Q Consensus 124 ~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~--------------------------------- 170 (349)
|++++|+..++++++..|.++..++.++..+...+++++|+..++++
T Consensus 509 G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~ 588 (1157)
T PRK11447 509 GQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGK 588 (1157)
T ss_pred CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCC
Confidence 99999999999999999999988888887777777777777666542
Q ss_pred -------HhcCCCChHHHHHHHHHHHHhhCHHHHHHHHHHHHccccccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhccc
Q psy9209 171 -------HMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKLAKLYDKLNETEAAADLFMEFVSKLD 243 (349)
Q Consensus 171 -------~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 243 (349)
++..|.++..+..+|.++...|++++|+..|+++++.+|+++.++..++.++...|++++|+..+++++...|
T Consensus 589 ~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p 668 (1157)
T PRK11447 589 EAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPATAN 668 (1157)
T ss_pred HHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCC
Confidence 2247888889999999999999999999999999999999999999999999999999999999999999888
Q ss_pred ccCCCCCCcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHcccCCh------HHHHHHHHHHHHHcCCCCCchhHHHHhhh
Q psy9209 244 TFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETA------EEAKSLLRSIAQKRQPDESSSQPMECAVV 317 (349)
Q Consensus 244 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 317 (349)
. ....+..+|.++...|++++|+..+++++...|+. ..++..++.++...|++++|+..|++++.
T Consensus 669 ~---------~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 669 D---------SLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMV 739 (1157)
T ss_pred C---------ChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 7 78899999999999999999999999999876543 24566679999999999999999999985
No 11
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=3.6e-31 Score=249.46 Aligned_cols=306 Identities=15% Similarity=0.147 Sum_probs=178.2
Q ss_pred hhhhHHhhCcHHHHHHHHHHHHHhccccCCCCCcchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhchHHHHHHHHH
Q psy9209 2 RNKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRS 81 (349)
Q Consensus 2 ~a~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~ 81 (349)
.+.++...|++++|+..|+++++..+... .++..+|.++...|++++|+..+++++...|++..++..++.
T Consensus 471 l~~~~~~~~~~~~A~~~~~~a~~~~~~~~---------~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 541 (899)
T TIGR02917 471 LGAIYLGKGDLAKAREAFEKALSIEPDFF---------PAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAG 541 (899)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhhCCCcH---------HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHH
Confidence 35566666777777777776663222111 345556666666666666666666666555555444332222
Q ss_pred -------------------------------HHHhcCCCcchHHHHHHHHHHHhhCcccHHHHHHHHHHHHhcCChHHHH
Q psy9209 82 -------------------------------IAQKRQPDESSSQAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAI 130 (349)
Q Consensus 82 -------------------------------~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 130 (349)
++..+...|++++|+..+++++...|.++..+..+|.++...|++++|+
T Consensus 542 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 621 (899)
T TIGR02917 542 LYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAV 621 (899)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 2223333455555555555555555555555555566666666666666
Q ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhCHHHHHHHHHHHHccccc
Q psy9209 131 QCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDA 210 (349)
Q Consensus 131 ~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~ 210 (349)
..|+++++..|.++.++..+|.++...|++++|+..++++++..|++..++..++.++...|++++|+..++.+.+..|.
T Consensus 622 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 701 (899)
T TIGR02917 622 SSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPK 701 (899)
T ss_pred HHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC
Confidence 66666655555555555566666666666666666666666555555555555555555555555555555555555555
Q ss_pred cHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCCCCCcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHcccCChHH
Q psy9209 211 DGKALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEE 290 (349)
Q Consensus 211 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 290 (349)
.+..+..+|.++...|++++|+..|++++...|+ ...+..++.++...|++++|...++++++..|++..
T Consensus 702 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~----------~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~ 771 (899)
T TIGR02917 702 AALGFELEGDLYLRQKDYPAAIQAYRKALKRAPS----------SQNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAV 771 (899)
T ss_pred ChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCC----------chHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH
Confidence 5666666666777777777777777777766665 144555566666666666666666666666666666
Q ss_pred HHHHHHHHHHHcCCCCCchhHHHHhhhcCCCCCCcc
Q psy9209 291 AKSLLRSIAQKRQPDESSSQPMECAVVLDPVPPSTR 326 (349)
Q Consensus 291 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~ 326 (349)
++..++.++...|++++|+..|+++++..|+++.++
T Consensus 772 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 807 (899)
T TIGR02917 772 LRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVL 807 (899)
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHH
Confidence 666666666666666666666666666666555443
No 12
>KOG0547|consensus
Probab=100.00 E-value=4.9e-31 Score=211.53 Aligned_cols=307 Identities=13% Similarity=0.111 Sum_probs=260.5
Q ss_pred hhhhHHhhCcHHHHHHHHHHHHHhccccCCCCCcchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhchHHHHHHHHH
Q psy9209 2 RNKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRS 81 (349)
Q Consensus 2 ~a~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~ 81 (349)
++.-+++.|+|++||++|.++|+..+..+ ..|.+++-+|...|+|++.++...++++++|+...++...+.
T Consensus 121 ~GN~~f~~kkY~eAIkyY~~AI~l~p~ep---------iFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~ 191 (606)
T KOG0547|consen 121 KGNKFFRNKKYDEAIKYYTQAIELCPDEP---------IFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRAS 191 (606)
T ss_pred hhhhhhhcccHHHHHHHHHHHHhcCCCCc---------hhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHH
Confidence 35567889999999999999996544332 568999999999999999999999999999987654321111
Q ss_pred -------H------------------------------------------------------------------------
Q psy9209 82 -------I------------------------------------------------------------------------ 82 (349)
Q Consensus 82 -------~------------------------------------------------------------------------ 82 (349)
+
T Consensus 192 A~E~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~ 271 (606)
T KOG0547|consen 192 AHEQLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDN 271 (606)
T ss_pred HHHhhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccC
Confidence 0
Q ss_pred -------------------------------------------------------------HHhcCCCcchHHHHHHHHH
Q psy9209 83 -------------------------------------------------------------AQKRQPDESSSQAVLYFQR 101 (349)
Q Consensus 83 -------------------------------------------------------------~~~~~~~~~~~~A~~~~~~ 101 (349)
|..+.-.|++..|...|++
T Consensus 272 ~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~ 351 (606)
T KOG0547|consen 272 KSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDA 351 (606)
T ss_pred CCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHH
Confidence 0111225777788888888
Q ss_pred HHhhCcccHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHH
Q psy9209 102 ALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRML 181 (349)
Q Consensus 102 ~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 181 (349)
++.++|.+...+..+|.+|...++.++-...|.++..++|.++++|+..|+++.-++++++|+.-|++++.++|++..++
T Consensus 352 ~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~ 431 (606)
T KOG0547|consen 352 AIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAY 431 (606)
T ss_pred HHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHH
Confidence 88888888888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhCHHHHHHHHHHHHccccccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCCCCCcchHHHHHHH
Q psy9209 182 TALGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYL 261 (349)
Q Consensus 182 ~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 261 (349)
..++.+.++++++++++..|+.+.+..|..++++...|.++..++++++|++.|..++.+.|....+ ...+..+...
T Consensus 432 iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~---~v~~~plV~K 508 (606)
T KOG0547|consen 432 IQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLI---IVNAAPLVHK 508 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccc---cccchhhhhh
Confidence 9999999999999999999999999999999999999999999999999999999999998872111 1122223333
Q ss_pred HHHH-HHhCCHHHHHHHHHHHHcccCChHHHHHHHHHHHHHcCCCCCchhHHHHhhhcCC
Q psy9209 262 ANHH-LKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDESSSQPMECAVVLDP 320 (349)
Q Consensus 262 ~~~~-~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p 320 (349)
|.+. .-.+++..|..+++++++++|....++..||.+..++|+.++|+++|+++..+..
T Consensus 509 a~l~~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~lAr 568 (606)
T KOG0547|consen 509 ALLVLQWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQLAR 568 (606)
T ss_pred hHhhhchhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 3222 2358999999999999999999999999999999999999999999999876543
No 13
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=100.00 E-value=2.7e-29 Score=214.21 Aligned_cols=302 Identities=15% Similarity=0.099 Sum_probs=256.2
Q ss_pred hhhhHHhhCcHHHHHHHHHHHHHhccccCCCCCcchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhchH-HHHHHHH
Q psy9209 2 RNKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAE-EAKSLLR 80 (349)
Q Consensus 2 ~a~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~-~~~~~l~ 80 (349)
++..+...|++++|+..|+++++.. |+. ..++..+|.++...|++++|+..+++++...+... .....+.
T Consensus 41 ~g~~~~~~~~~~~A~~~~~~al~~~------p~~---~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~ 111 (389)
T PRK11788 41 KGLNFLLNEQPDKAIDLFIEMLKVD------PET---VELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQ 111 (389)
T ss_pred HHHHHHhcCChHHHHHHHHHHHhcC------ccc---HHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHH
Confidence 4567778899999999999999532 222 15789999999999999999999999987532221 1223456
Q ss_pred HHHHhcCCCcchHHHHHHHHHHHhhCcccHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCcccH-----HHHHHHHHHHH
Q psy9209 81 SIAQKRQPDESSSQAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDY-----RAWYGLGQTYE 155 (349)
Q Consensus 81 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~-----~~~~~l~~~~~ 155 (349)
.++..+...|++++|+..|+++++.+|.+..++..++.++...|++++|++.++++++..|.+. ..+..+|.++.
T Consensus 112 ~La~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~ 191 (389)
T PRK11788 112 ELGQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQAL 191 (389)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHH
Confidence 6677788889999999999999999999999999999999999999999999999999877642 35678999999
Q ss_pred HhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhCHHHHHHHHHHHHcccccc-HHHHHHHHHHHHhcCcHHHHHHH
Q psy9209 156 ILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDAD-GKALFKLAKLYDKLNETEAAADL 234 (349)
Q Consensus 156 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~ 234 (349)
..|++++|+..++++++..|++..++..+|.++...|++++|+..+++++..+|.+ ..++..++.++...|++++|...
T Consensus 192 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~ 271 (389)
T PRK11788 192 ARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEF 271 (389)
T ss_pred hCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999988865 46778899999999999999999
Q ss_pred HHHHHhcccccCCCCCCcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHcccCChHHHHHHHHHHHHH--cCCCCCchhHH
Q psy9209 235 FMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQK--RQPDESSSQPM 312 (349)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~--~~~~~~A~~~~ 312 (349)
+++++...|+ . ..+..++.++...|++++|+..++++++..|+.......++..... .|+.++++..+
T Consensus 272 l~~~~~~~p~---------~-~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~ 341 (389)
T PRK11788 272 LRRALEEYPG---------A-DLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHLAEAEEGRAKESLLLL 341 (389)
T ss_pred HHHHHHhCCC---------c-hHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhccCCccchhHHHHH
Confidence 9999999886 3 3458899999999999999999999999999998777666554432 45888888888
Q ss_pred HHhh----hcCCCC
Q psy9209 313 ECAV----VLDPVP 322 (349)
Q Consensus 313 ~~a~----~~~p~~ 322 (349)
++.+ ..+|++
T Consensus 342 ~~~~~~~~~~~p~~ 355 (389)
T PRK11788 342 RDLVGEQLKRKPRY 355 (389)
T ss_pred HHHHHHHHhCCCCE
Confidence 7665 445553
No 14
>KOG1155|consensus
Probab=100.00 E-value=1.7e-29 Score=201.48 Aligned_cols=290 Identities=38% Similarity=0.630 Sum_probs=244.6
Q ss_pred hhhHHhhCcHHHHHHHHHHHHHh-ccccCCCCCcchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhchHHHHHHHHH
Q psy9209 3 NKLYDKLNETEAAADLFMEFVSK-LDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRS 81 (349)
Q Consensus 3 a~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~ 81 (349)
..++....+.++++.-++..+.. ++... ..-...|.+...+.++++|+..|+.+.+.+|-..+-...+.+
T Consensus 234 ~~a~~el~q~~e~~~k~e~l~~~gf~~~~---------~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN 304 (559)
T KOG1155|consen 234 KKAYQELHQHEEALQKKERLSSVGFPNSM---------YIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSN 304 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCccH---------HHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhH
Confidence 45566666777888777666633 22111 456678889999999999999999999887743221111111
Q ss_pred -------------------------------HHHhcCCCcchHHHHHHHHHHHhhCcccHHHHHHHHHHHHhcCChHHHH
Q psy9209 82 -------------------------------IAQKRQPDESSSQAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAI 130 (349)
Q Consensus 82 -------------------------------~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 130 (349)
++..|.-.+++++|+.+|+++++++|....+|..+|.-|..+++...|+
T Consensus 305 ~LYv~~~~skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi 384 (559)
T KOG1155|consen 305 VLYVKNDKSKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAI 384 (559)
T ss_pred HHHHHhhhHHHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHH
Confidence 2344555789999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhCHHHHHHHHHHHHccccc
Q psy9209 131 QCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDA 210 (349)
Q Consensus 131 ~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~ 210 (349)
+.|++|++++|.+..+|+++|+.|..++.+.=|+-+|+++....|+++..|..+|.||.+.++.++|+.+|.+++.....
T Consensus 385 ~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dt 464 (559)
T KOG1155|consen 385 ESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDT 464 (559)
T ss_pred HHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred cHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCCCCCcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHcccCChHH
Q psy9209 211 DGKALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEE 290 (349)
Q Consensus 211 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 290 (349)
+..++..+|.+|.++++.++|..+|++.++..... ....+....+...|+..+.+.+++++|..+..+++..++...+
T Consensus 465 e~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~e--g~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~~~e~ee 542 (559)
T KOG1155|consen 465 EGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELE--GEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKGETECEE 542 (559)
T ss_pred chHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhh--cccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcCCchHHH
Confidence 99999999999999999999999999999854211 1223336777888999999999999999999999999888888
Q ss_pred HHHHHHHHHHHcC
Q psy9209 291 AKSLLRSIAQKRQ 303 (349)
Q Consensus 291 ~~~~l~~~~~~~~ 303 (349)
+...+..+...+.
T Consensus 543 ak~LlReir~~~~ 555 (559)
T KOG1155|consen 543 AKALLREIRKIQA 555 (559)
T ss_pred HHHHHHHHHHhcC
Confidence 8888877766543
No 15
>KOG1126|consensus
Probab=99.98 E-value=2.1e-30 Score=215.58 Aligned_cols=267 Identities=19% Similarity=0.278 Sum_probs=238.5
Q ss_pred hhhHHhhCcHHHHHHHHHHHHHhccccCCCCCcchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhchHHHHHHHHHH
Q psy9209 3 NKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSI 82 (349)
Q Consensus 3 a~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~ 82 (349)
|+.|+..++|++|..+|+.+-+.-|-.. .. .-....++++..+--+--...+..+..+|+.|+.|..++++
T Consensus 360 GrayFEl~~Y~~a~~~F~~~r~~~p~rv------~~---meiyST~LWHLq~~v~Ls~Laq~Li~~~~~sPesWca~GNc 430 (638)
T KOG1126|consen 360 GRAYFELIEYDQAERIFSLVRRIEPYRV------KG---MEIYSTTLWHLQDEVALSYLAQDLIDTDPNSPESWCALGNC 430 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccccc------cc---hhHHHHHHHHHHhhHHHHHHHHHHHhhCCCCcHHHHHhcch
Confidence 7889999999999999998873322211 11 22334455555554444445566778899999999888866
Q ss_pred HHhcCCCcchHHHHHHHHHHHhhCcccHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHHH
Q psy9209 83 AQKRQPDESSSQAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYY 162 (349)
Q Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~ 162 (349)
+.-+++++.|+++|+++++++|...-+|..+|.-+....+++.|..+|++++..+|.+..+|+++|.+|.++++++.
T Consensus 431 ---fSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqek~e~ 507 (638)
T KOG1126|consen 431 ---FSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQEKLEF 507 (638)
T ss_pred ---hhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhheeccchhhH
Confidence 44469999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCChHHHHHHHHHHHHhhCHHHHHHHHHHHHccccccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc
Q psy9209 163 GLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKLAKLYDKLNETEAAADLFMEFVSKL 242 (349)
Q Consensus 163 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 242 (349)
|.-+|++|++++|.+......+|.++.+.|+.++|+.+|++|+.++|.++-..+..|.++...+++++|...+++..+..
T Consensus 508 Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~v 587 (638)
T KOG1126|consen 508 AEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRYVEALQELEELKELV 587 (638)
T ss_pred HHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHcccCChHH
Q psy9209 243 DTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEE 290 (349)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 290 (349)
|+ ...+++.+|.+|.+.|+.+.|+..|.-|..++|.-..
T Consensus 588 P~---------es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~~ 626 (638)
T KOG1126|consen 588 PQ---------ESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGAQ 626 (638)
T ss_pred cc---------hHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccch
Confidence 99 8999999999999999999999999999999997655
No 16
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.97 E-value=9.8e-29 Score=210.80 Aligned_cols=275 Identities=12% Similarity=0.038 Sum_probs=245.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhchHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhCccc----HHHHHH
Q psy9209 40 FAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDESSSQAVLYFQRALKLNPNY----LGVWTL 115 (349)
Q Consensus 40 ~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~ 115 (349)
...+.+|..+...|++++|+..|+++++.+|++..++..++ ..+...|++++|+..+++++...+.. ..++..
T Consensus 36 ~~~y~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la---~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~ 112 (389)
T PRK11788 36 SRDYFKGLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALG---NLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQE 112 (389)
T ss_pred cHHHHHHHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHH---HHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Confidence 34677899999999999999999999999999887755554 44566799999999999998854322 356789
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCh-----HHHHHHHHHHHH
Q psy9209 116 LGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDP-----RMLTALGEAFEK 190 (349)
Q Consensus 116 la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-----~~~~~l~~~~~~ 190 (349)
+|.+|...|++++|+..|+++++..|.+..++..++.++...|++++|+..++++++..|.+. ..+..+|.++..
T Consensus 113 La~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~ 192 (389)
T PRK11788 113 LGQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALA 192 (389)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999999887653 256688999999
Q ss_pred hhCHHHHHHHHHHHHccccccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCCCCCcchHHHHHHHHHHHHHhCC
Q psy9209 191 QEKISEAMKCYNKSRAIGDADGKALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANN 270 (349)
Q Consensus 191 ~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 270 (349)
.|++++|+..++++++..|+...++..+|.++...|++++|+..+++++...|.. ...++..++.++...|+
T Consensus 193 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~--------~~~~~~~l~~~~~~~g~ 264 (389)
T PRK11788 193 RGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEY--------LSEVLPKLMECYQALGD 264 (389)
T ss_pred CCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhh--------HHHHHHHHHHHHHHcCC
Confidence 9999999999999999999999999999999999999999999999999987762 35678899999999999
Q ss_pred HHHHHHHHHHHHcccCChHHHHHHHHHHHHHcCCCCCchhHHHHhhhcCCCCCCcc
Q psy9209 271 LDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDESSSQPMECAVVLDPVPPSTR 326 (349)
Q Consensus 271 ~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~ 326 (349)
+++|...++++++..|+.... ..++.++...|++++|+..++++++..|++....
T Consensus 265 ~~~A~~~l~~~~~~~p~~~~~-~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~ 319 (389)
T PRK11788 265 EAEGLEFLRRALEEYPGADLL-LALAQLLEEQEGPEAAQALLREQLRRHPSLRGFH 319 (389)
T ss_pred HHHHHHHHHHHHHhCCCchHH-HHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHH
Confidence 999999999999999987554 8899999999999999999999999999887543
No 17
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.97 E-value=1.8e-28 Score=223.97 Aligned_cols=268 Identities=12% Similarity=0.030 Sum_probs=246.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhchHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhCcccHHHHHHHHHH
Q psy9209 40 FAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDESSSQAVLYFQRALKLNPNYLGVWTLLGHE 119 (349)
Q Consensus 40 ~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 119 (349)
.+|+.+|.++.. ++..+|+..+.+++...|++.. ...++..+...|++++|+..|++++...|. ...+..+|.+
T Consensus 478 ~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~~----~L~lA~al~~~Gr~eeAi~~~rka~~~~p~-~~a~~~la~a 551 (987)
T PRK09782 478 AAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAWQ----HRAVAYQAYQVEDYATALAAWQKISLHDMS-NEDLLAAANT 551 (987)
T ss_pred HHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchHH----HHHHHHHHHHCCCHHHHHHHHHHHhccCCC-cHHHHHHHHH
Confidence 689999999987 8999999999999999997542 222344445679999999999998877665 4567899999
Q ss_pred HHhcCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhCHHHHHH
Q psy9209 120 YMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMK 199 (349)
Q Consensus 120 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 199 (349)
+...|++++|+.+|+++++.+|.....+..++......|++++|+..++++++.+|+ +.++..+|.++.+.|++++|+.
T Consensus 552 ll~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~-~~a~~~LA~~l~~lG~~deA~~ 630 (987)
T PRK09782 552 AQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNIAPS-ANAYVARATIYRQRHNVPAAVS 630 (987)
T ss_pred HHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHCCCHHHHHH
Confidence 999999999999999999999998888877777777889999999999999999996 9999999999999999999999
Q ss_pred HHHHHHccccccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCCCCCcchHHHHHHHHHHHHHhCCHHHHHHHHH
Q psy9209 200 CYNKSRAIGDADGKALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQ 279 (349)
Q Consensus 200 ~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 279 (349)
.|++++..+|+++.++.++|.++...|++++|+..|+++++..|+ ++.++.++|.++...|++++|+.+++
T Consensus 631 ~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~---------~~~a~~nLA~al~~lGd~~eA~~~l~ 701 (987)
T PRK09782 631 DLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPD---------DPALIRQLAYVNQRLDDMAATQHYAR 701 (987)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC---------CHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999 89999999999999999999999999
Q ss_pred HHHcccCChHHHHHHHHHHHHHcCCCCCchhHHHHhhhcCCCCC
Q psy9209 280 KCLQHEETAEEAKSLLRSIAQKRQPDESSSQPMECAVVLDPVPP 323 (349)
Q Consensus 280 ~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~ 323 (349)
++++..|+...+....+.+.....+++.|.+.+.++..++|...
T Consensus 702 ~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~~~~ 745 (987)
T PRK09782 702 LVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFSFDSS 745 (987)
T ss_pred HHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcCccch
Confidence 99999999999999999999999999999999999999999876
No 18
>KOG1155|consensus
Probab=99.97 E-value=1e-27 Score=191.40 Aligned_cols=309 Identities=18% Similarity=0.201 Sum_probs=253.5
Q ss_pred ChhhhHHhhCcHHHHHHHHHHHHHhccccC---------------------CCCCcchhHHHHHHHHHHHHhcCCHHHHH
Q psy9209 1 MRNKLYDKLNETEAAADLFMEFVSKLDTFA---------------------APPDKTCGFFAFKYLANHHLKANNLDTAY 59 (349)
Q Consensus 1 l~a~~~~~~g~~~~A~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 59 (349)
|.+.++.+.|....|+..|.+++...|-.. .-+.+ .....-+.++.++....+.++++
T Consensus 169 L~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~~~l~~~l~~~-~h~M~~~F~~~a~~el~q~~e~~ 247 (559)
T KOG1155|consen 169 LYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEILSILVVGLPSD-MHWMKKFFLKKAYQELHQHEEAL 247 (559)
T ss_pred HHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHHHHHHhcCccc-chHHHHHHHHHHHHHHHHHHHHH
Confidence 457788899999999999999986555332 00000 00011223445555555666666
Q ss_pred HHHHHHhhh-hhchHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhCcccH----------------------------
Q psy9209 60 KCAQKCLQH-EETAEEAKSLLRSIAQKRQPDESSSQAVLYFQRALKLNPNYL---------------------------- 110 (349)
Q Consensus 60 ~~~~~~l~~-~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~---------------------------- 110 (349)
.-++..... -|.+... ...++.+.....++++|+..|+.+.+.+|-..
T Consensus 248 ~k~e~l~~~gf~~~~~i---~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~~ 324 (559)
T KOG1155|consen 248 QKKERLSSVGFPNSMYI---KTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVSN 324 (559)
T ss_pred HHHHHHHhccCCccHHH---HHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHHH
Confidence 666666555 4444333 44455666677899999999999999887421
Q ss_pred ------HHHHHHHHHHHhcCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHH
Q psy9209 111 ------GVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTAL 184 (349)
Q Consensus 111 ------~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 184 (349)
+....+|+.|.-.++.++|+.+|+++++++|....+|..+|.-|..+++...|+..|++|++++|.+-.+|+.+
T Consensus 325 idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGL 404 (559)
T KOG1155|consen 325 IDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGL 404 (559)
T ss_pred hccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhh
Confidence 11233466777788899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhCHHHHHHHHHHHHccccccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCCCCCcchHHHHHHHHHH
Q psy9209 185 GEAFEKQEKISEAMKCYNKSRAIGDADGKALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANH 264 (349)
Q Consensus 185 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 264 (349)
|++|.-++...=|+-+|++++...|.++..|..||.||.+.++.++|+++|.+++..... ...++..||.+
T Consensus 405 GQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dt---------e~~~l~~LakL 475 (559)
T KOG1155|consen 405 GQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDT---------EGSALVRLAKL 475 (559)
T ss_pred hHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcccc---------chHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999998766 78999999999
Q ss_pred HHHhCCHHHHHHHHHHHHc-------ccCChHHHHHHHHHHHHHcCCCCCchhHHHHhhhcCCCC
Q psy9209 265 HLKANNLDTAYKCAQKCLQ-------HEETAEEAKSLLRSIAQKRQPDESSSQPMECAVVLDPVP 322 (349)
Q Consensus 265 ~~~~g~~~~A~~~~~~a~~-------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~ 322 (349)
|.+.++..+|..+|++.++ ..|....+...|+.-+.+.+++++|..+..+++.-++.-
T Consensus 476 ye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~~~e~ 540 (559)
T KOG1155|consen 476 YEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKGETEC 540 (559)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcCCchH
Confidence 9999999999999999987 456677888889999999999999999888887765543
No 19
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.97 E-value=2.3e-27 Score=216.17 Aligned_cols=300 Identities=12% Similarity=-0.058 Sum_probs=175.6
Q ss_pred hhhHHhhCcHHHHHHHHHHHHHhccccCCCCCcchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhchHHHHHHHHHH
Q psy9209 3 NKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSI 82 (349)
Q Consensus 3 a~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~ 82 (349)
|.++...|++++|+..|+++++..|... .++..++.++...|++++|+..++++++..|++.. +..++.+
T Consensus 56 A~~~~~~g~~~~A~~~~~~al~~~P~~~---------~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~ 125 (765)
T PRK10049 56 AVAYRNLKQWQNSLTLWQKALSLEPQND---------DYQRGLILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALAYV 125 (765)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCH---------HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHH
Confidence 5667788888888888888874322221 45677788888888888888888888888887777 5554433
Q ss_pred HHhcCCCcchHHHHHHHHHHHhhCcccHHHHHHHHHHHHhcCChHHHHHHHH----------------------------
Q psy9209 83 AQKRQPDESSSQAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYR---------------------------- 134 (349)
Q Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~---------------------------- 134 (349)
+...|++++|+..++++++..|+++.++..+|.++...|..++|+..++
T Consensus 126 ---l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~ 202 (765)
T PRK10049 126 ---YKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPT 202 (765)
T ss_pred ---HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccc
Confidence 4445788888888888888888777777666666655555443333322
Q ss_pred ------------------HHHHhCcccHH-------HHHH-HHHHHHHhCCHHHHHHHHHHHHhcCCCCh-HHHHHHHHH
Q psy9209 135 ------------------QAIEINNLDYR-------AWYG-LGQTYEILRLPYYGLYYYKQAHMVRPNDP-RMLTALGEA 187 (349)
Q Consensus 135 ------------------~a~~~~~~~~~-------~~~~-l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~l~~~ 187 (349)
++++..|.++. +... ++ .+...|++++|+..|+++++..|..+ .+...+|.+
T Consensus 203 ~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~-~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~ 281 (765)
T PRK10049 203 RSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLG-ALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASA 281 (765)
T ss_pred cChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHH-HHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHH
Confidence 22221111110 0111 11 12344555555555555555432222 122223445
Q ss_pred HHHhhCHHHHHHHHHHHHcccccc-----------------------------------------------------HHH
Q psy9209 188 FEKQEKISEAMKCYNKSRAIGDAD-----------------------------------------------------GKA 214 (349)
Q Consensus 188 ~~~~~~~~~A~~~~~~a~~~~~~~-----------------------------------------------------~~~ 214 (349)
+...|++++|+..|++++..+|.+ ..+
T Consensus 282 yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a 361 (765)
T PRK10049 282 YLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQG 361 (765)
T ss_pred HHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHH
Confidence 555555555555555544444332 123
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCCCCCcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHcccCChHHHHHH
Q psy9209 215 LFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSL 294 (349)
Q Consensus 215 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 294 (349)
+..++.++...|++++|+..+++++...|. +..++..+|.++...|++++|+..+++++..+|++..++..
T Consensus 362 ~~~~a~~l~~~g~~~eA~~~l~~al~~~P~---------n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~ 432 (765)
T PRK10049 362 QSLLSQVAKYSNDLPQAEMRARELAYNAPG---------NQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVE 432 (765)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHH
Confidence 344555555555555555555555555555 56666666666666666666666666666666666666666
Q ss_pred HHHHHHHcCCCCCchhHHHHhhhcCCCCCCc
Q psy9209 295 LRSIAQKRQPDESSSQPMECAVVLDPVPPST 325 (349)
Q Consensus 295 l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~ 325 (349)
++.++...|++++|...++++++..|+++.+
T Consensus 433 ~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~ 463 (765)
T PRK10049 433 QAWTALDLQEWRQMDVLTDDVVAREPQDPGV 463 (765)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhCCCCHHH
Confidence 6666666666666666666666666666543
No 20
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.97 E-value=5.1e-27 Score=214.49 Aligned_cols=300 Identities=10% Similarity=-0.014 Sum_probs=251.7
Q ss_pred hHHhhCcHHHHHHHHHHHHHhccccCCCCCcchhHHHHHHHHHHHHhcCC-------------------------HH---
Q psy9209 5 LYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANN-------------------------LD--- 56 (349)
Q Consensus 5 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-------------------------~~--- 56 (349)
+..+.|++++|..+|+.+... +....-+ ..+...++.+|...+. +.
T Consensus 385 ~~~~~~~~~~a~~~~~~~~~~-~~~~~~~-----~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 458 (987)
T PRK09782 385 QLMQNGQSREAADLLLQRYPF-QGDARLS-----QTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIA 458 (987)
T ss_pred HHHHcccHHHHHHHHHHhcCC-CcccccC-----HHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhh
Confidence 456789999999999998842 1111001 1233367777766544 22
Q ss_pred HHHHHHHHHhhhhhc--hHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhCcccHHHHHHHHHHHHhcCChHHHHHHHH
Q psy9209 57 TAYKCAQKCLQHEET--AEEAKSLLRSIAQKRQPDESSSQAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYR 134 (349)
Q Consensus 57 ~A~~~~~~~l~~~~~--~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 134 (349)
.+...+.+++...|. ++.++..++.+. .. +++.+|+..+.+++...|++. ....+|.++...|++++|+..|+
T Consensus 459 ~~~~~~~~al~~~p~~~~~~a~~~LG~~l---~~-~~~~eAi~a~~~Al~~~Pd~~-~~L~lA~al~~~Gr~eeAi~~~r 533 (987)
T PRK09782 459 DNCPAIVRLLGDMSPSYDAAAWNRLAKCY---RD-TLPGVALYAWLQAEQRQPDAW-QHRAVAYQAYQVEDYATALAAWQ 533 (987)
T ss_pred hhHHHHHHhcccCCCCCCHHHHHHHHHHH---Hh-CCcHHHHHHHHHHHHhCCchH-HHHHHHHHHHHCCCHHHHHHHHH
Confidence 233444455555666 777766666554 33 799999999999999999754 46667888889999999999999
Q ss_pred HHHHhCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhCHHHHHHHHHHHHccccccHHH
Q psy9209 135 QAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKA 214 (349)
Q Consensus 135 ~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~ 214 (349)
+++...|. ...+..+|.++...|++++|+.+++++++..|.....+..++......|++++|+..++++++.+|+ +..
T Consensus 534 ka~~~~p~-~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~-~~a 611 (987)
T PRK09782 534 KISLHDMS-NEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNIAPS-ANA 611 (987)
T ss_pred HHhccCCC-cHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC-HHH
Confidence 98877555 4567899999999999999999999999999999888877777777889999999999999999996 999
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCCCCCcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHcccCChHHHHHH
Q psy9209 215 LFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSL 294 (349)
Q Consensus 215 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 294 (349)
+..+|.++.+.|++++|+..|++++..+|+ .+.++..+|.++...|++++|+..++++++..|+++.++..
T Consensus 612 ~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd---------~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~n 682 (987)
T PRK09782 612 YVARATIYRQRHNVPAAVSDLRAALELEPN---------NSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQ 682 (987)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC---------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 999999999999999999999999999999 89999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCCCchhHHHHhhhcCCCCCCcc
Q psy9209 295 LRSIAQKRQPDESSSQPMECAVVLDPVPPSTR 326 (349)
Q Consensus 295 l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~ 326 (349)
+|.++...|++++|+..|+++++++|++..+.
T Consensus 683 LA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~ 714 (987)
T PRK09782 683 LAYVNQRLDDMAATQHYARLVIDDIDNQALIT 714 (987)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcCCCCchhh
Confidence 99999999999999999999999999887654
No 21
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.97 E-value=5.5e-27 Score=213.69 Aligned_cols=310 Identities=15% Similarity=0.089 Sum_probs=249.6
Q ss_pred hhHHhhCcHHHHHHHHHHHHHhccccCCCCCcchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhchHHHHHHHHHHH
Q psy9209 4 KLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIA 83 (349)
Q Consensus 4 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~ 83 (349)
++....|+.++|+..|.++.. . .+.. ..++..+|.++...|++++|+..++++++.+|+++.++..++
T Consensus 23 ~ia~~~g~~~~A~~~~~~~~~-~-----~~~~---a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la--- 90 (765)
T PRK10049 23 QIALWAGQDAEVITVYNRYRV-H-----MQLP---ARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLI--- 90 (765)
T ss_pred HHHHHcCCHHHHHHHHHHHHh-h-----CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH---
Confidence 466788999999999998872 1 1211 146899999999999999999999999999999988865444
Q ss_pred HhcCCCcchHHHHHHHHHHHhhCcccHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHHHH
Q psy9209 84 QKRQPDESSSQAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYG 163 (349)
Q Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A 163 (349)
.++...|++++|+..++++++..|+++. +..+|.++...|++++|+..++++++..|+++.++..++.++...+..++|
T Consensus 91 ~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~A 169 (765)
T PRK10049 91 LTLADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPA 169 (765)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHH
Confidence 4455679999999999999999999999 999999999999999999999999999999999999999988777766654
Q ss_pred H----------------------------------------------HHHHHHHhcCCCChHH-------HHH-HHHHHH
Q psy9209 164 L----------------------------------------------YYYKQAHMVRPNDPRM-------LTA-LGEAFE 189 (349)
Q Consensus 164 ~----------------------------------------------~~~~~~~~~~~~~~~~-------~~~-l~~~~~ 189 (349)
+ ..++.+++..|.++.. ... ++ .+.
T Consensus 170 l~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~-~Ll 248 (765)
T PRK10049 170 LGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLG-ALL 248 (765)
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHH-HHH
Confidence 4 3444444333333321 111 33 346
Q ss_pred HhhCHHHHHHHHHHHHccccccH-HHHHHHHHHHHhcCcHHHHHHHHHHHHhcccccC----------------------
Q psy9209 190 KQEKISEAMKCYNKSRAIGDADG-KALFKLAKLYDKLNETEAAADLFMEFVSKLDTFA---------------------- 246 (349)
Q Consensus 190 ~~~~~~~A~~~~~~a~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~---------------------- 246 (349)
..|++++|+..|+++++..|..+ .+...+|.++..+|++++|+..|++++...|...
T Consensus 249 ~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~e 328 (765)
T PRK10049 249 ARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPG 328 (765)
T ss_pred HhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHH
Confidence 77999999999999998864322 2344468889999999999999999887665430
Q ss_pred -------CCCCCc---------------chHHHHHHHHHHHHHhCCHHHHHHHHHHHHcccCChHHHHHHHHHHHHHcCC
Q psy9209 247 -------APPDKT---------------CGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQP 304 (349)
Q Consensus 247 -------~~~~~~---------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~ 304 (349)
.....| ....++..++.++...|++++|+..+++++...|.++.++..++.++...|+
T Consensus 329 A~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~ 408 (765)
T PRK10049 329 ALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGW 408 (765)
T ss_pred HHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCC
Confidence 001111 1245678899999999999999999999999999999999999999999999
Q ss_pred CCCchhHHHHhhhcCCCCCCccc
Q psy9209 305 DESSSQPMECAVVLDPVPPSTRS 327 (349)
Q Consensus 305 ~~~A~~~~~~a~~~~p~~~~~~~ 327 (349)
+++|+..++++++++|++.....
T Consensus 409 ~~~A~~~l~~al~l~Pd~~~l~~ 431 (765)
T PRK10049 409 PRAAENELKKAEVLEPRNINLEV 431 (765)
T ss_pred HHHHHHHHHHHHhhCCCChHHHH
Confidence 99999999999999999976543
No 22
>KOG2002|consensus
Probab=99.96 E-value=6.7e-27 Score=202.08 Aligned_cols=316 Identities=16% Similarity=0.150 Sum_probs=214.6
Q ss_pred hhhhHHhhCcHHHHHHHHHHHHHhccccCCCCCcchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhchHHHHHHHHH
Q psy9209 2 RNKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRS 81 (349)
Q Consensus 2 ~a~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~ 81 (349)
+|++.+..|+|..|+.+|++++...|....++ ...+|.|+++.|+.+.|+..|+++++++|.+..+...|+.
T Consensus 170 kA~i~ynkkdY~~al~yyk~al~inp~~~aD~--------rIgig~Cf~kl~~~~~a~~a~~ralqLdp~~v~alv~L~~ 241 (1018)
T KOG2002|consen 170 KARIAYNKKDYRGALKYYKKALRINPACKADV--------RIGIGHCFWKLGMSEKALLAFERALQLDPTCVSALVALGE 241 (1018)
T ss_pred HHHHHhccccHHHHHHHHHHHHhcCcccCCCc--------cchhhhHHHhccchhhHHHHHHHHHhcChhhHHHHHHHHH
Confidence 68899999999999999999996555444333 5678999999999999999999999999999998888888
Q ss_pred HHHhcCCCcchHHHHHHHHHHHhhCcccHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCcc---cHHHHHHHHHHHHHhC
Q psy9209 82 IAQKRQPDESSSQAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNL---DYRAWYGLGQTYEILR 158 (349)
Q Consensus 82 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~---~~~~~~~l~~~~~~~~ 158 (349)
+.........+..++..+.++...+|.+|.+...++..++..|+|+.+..+...++..... -.+.++.+|.+|..+|
T Consensus 242 ~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~G 321 (1018)
T KOG2002|consen 242 VDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQG 321 (1018)
T ss_pred HHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhc
Confidence 7776666667777888888888777776666655555555555555555555555543211 2334555555555555
Q ss_pred CHHHHHHHHHHHHhcCCCC-hHHHHHHHHHHHHhhCHHHHHHHHHHHHccccccHHHHHHHHHHHHhcC----cHHHH--
Q psy9209 159 LPYYGLYYYKQAHMVRPND-PRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKLAKLYDKLN----ETEAA-- 231 (349)
Q Consensus 159 ~~~~A~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~----~~~~A-- 231 (349)
++++|..+|.++++.+|++ .-.++.+|.++...|+++.|+.+|+++++..|++.+....+|.+|...+ ..+.|
T Consensus 322 d~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~ 401 (1018)
T KOG2002|consen 322 DFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASN 401 (1018)
T ss_pred cHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHH
Confidence 5555555555555555554 3444555555555555555555555555555555444444444444432 23333
Q ss_pred -------------------------------HHHHHHHHhcccccCCCCCCcchHHHHHHHHHHHHHhCCHHHHHHHHHH
Q psy9209 232 -------------------------------ADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQK 280 (349)
Q Consensus 232 -------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 280 (349)
+..|.+++.+... ...+-.++.++++|..++..|++.+|...|.+
T Consensus 402 ~l~K~~~~~~~d~~a~l~laql~e~~d~~~sL~~~~~A~d~L~~----~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~ 477 (1018)
T KOG2002|consen 402 VLGKVLEQTPVDSEAWLELAQLLEQTDPWASLDAYGNALDILES----KGKQIPPEVLNNVASLHFRLGNIEKALEHFKS 477 (1018)
T ss_pred HHHHHHhcccccHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHH----cCCCCCHHHHHhHHHHHHHhcChHHHHHHHHH
Confidence 5555555432221 11223578889999999999999999999999
Q ss_pred HHcc-----cCC-----hHHHHHHHHHHHHHcCCCCCchhHHHHhhhcCCCCCCccccC
Q psy9209 281 CLQH-----EET-----AEEAKSLLRSIAQKRQPDESSSQPMECAVVLDPVPPSTRSSK 329 (349)
Q Consensus 281 a~~~-----~~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~ 329 (349)
++.. +++ +....++++.+....++++.|.+.|..+++..|...+...++
T Consensus 478 A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl 536 (1018)
T KOG2002|consen 478 ALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRL 536 (1018)
T ss_pred HhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHh
Confidence 8765 121 223578889999999999999999999999988877766555
No 23
>KOG0547|consensus
Probab=99.96 E-value=1.9e-27 Score=191.04 Aligned_cols=278 Identities=13% Similarity=0.111 Sum_probs=246.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhchHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhCcccHHHHHHHHH
Q psy9209 39 FFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDESSSQAVLYFQRALKLNPNYLGVWTLLGH 118 (349)
Q Consensus 39 ~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~ 118 (349)
+..+...|+-++..|+|++|+.+|..++++.|+.+.. +.+.+-+|...|+|++.++...++++++|+...+++..+.
T Consensus 115 A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiF---YsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~ 191 (606)
T KOG0547|consen 115 AAALKTKGNKFFRNKKYDEAIKYYTQAIELCPDEPIF---YSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRAS 191 (606)
T ss_pred HHHHHhhhhhhhhcccHHHHHHHHHHHHhcCCCCchh---hhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHH
Confidence 4568889999999999999999999999999997655 4555566666799999999999999999999999999999
Q ss_pred HHHhcCChHHHHHHHHH------------------HHHh--------------Cc-------------------------
Q psy9209 119 EYMEMKNTNAAIQCYRQ------------------AIEI--------------NN------------------------- 141 (349)
Q Consensus 119 ~~~~~~~~~~A~~~~~~------------------a~~~--------------~~------------------------- 141 (349)
.+..+|++++|+....- .++. .|
T Consensus 192 A~E~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~ 271 (606)
T KOG0547|consen 192 AHEQLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDN 271 (606)
T ss_pred HHHhhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccC
Confidence 99999999888754321 1110 00
Q ss_pred -------------------------------------------cc---------HHHHHHHHHHHHHhCCHHHHHHHHHH
Q psy9209 142 -------------------------------------------LD---------YRAWYGLGQTYEILRLPYYGLYYYKQ 169 (349)
Q Consensus 142 -------------------------------------------~~---------~~~~~~l~~~~~~~~~~~~A~~~~~~ 169 (349)
.+ ..++...|..+.-.|++-.|...++.
T Consensus 272 ~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~ 351 (606)
T KOG0547|consen 272 KSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDA 351 (606)
T ss_pred CCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHH
Confidence 01 33445556667778899999999999
Q ss_pred HHhcCCCChHHHHHHHHHHHHhhCHHHHHHHHHHHHccccccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCCC
Q psy9209 170 AHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPP 249 (349)
Q Consensus 170 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 249 (349)
++.++|.+...|..+|.+|....+.++-...|.++..++|.++++|+..|+++.-++++++|+..|++++.++|+
T Consensus 352 ~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe----- 426 (606)
T KOG0547|consen 352 AIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPE----- 426 (606)
T ss_pred HHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChh-----
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHcccCChHHHHHHHHHHHHHcCCCCCchhHHHHhhhcCCCCCCcccc
Q psy9209 250 DKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDESSSQPMECAVVLDPVPPSTRSS 328 (349)
Q Consensus 250 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~ 328 (349)
+...+..++.+.+++++++++...|+.+.+..|+.++++...+.++..+++++.|++.|+.++++.|....++.+
T Consensus 427 ----~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~ 501 (606)
T KOG0547|consen 427 ----NAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVN 501 (606)
T ss_pred ----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhcccccccccc
Confidence 899999999999999999999999999999999999999999999999999999999999999999995544443
No 24
>KOG1173|consensus
Probab=99.96 E-value=4.8e-27 Score=191.97 Aligned_cols=280 Identities=16% Similarity=0.128 Sum_probs=254.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhchHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhCcccHHHHHHHHHH
Q psy9209 40 FAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDESSSQAVLYFQRALKLNPNYLGVWTLLGHE 119 (349)
Q Consensus 40 ~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 119 (349)
.+....+..++..+++.+..+.++..++.+|-+..... ..++ ++...|+..+-...-.+.++..|+.+..|+..|..
T Consensus 245 dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~--~~ia-~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~Y 321 (611)
T KOG1173|consen 245 DLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLP--LHIA-CLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCY 321 (611)
T ss_pred HHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHH--HHHH-HHHHhcccchHHHHHHHHHHhCCCCCcchhhHHHH
Confidence 45677888999999999999999999999998877643 3333 44556787777777888999999999999999999
Q ss_pred HHhcCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhCHHHHHH
Q psy9209 120 YMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMK 199 (349)
Q Consensus 120 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 199 (349)
|...|++.+|..+|.++..++|....+|...|..+...|+.++|+..|..|-++.|........+|.-|...++++-|..
T Consensus 322 Yl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~ 401 (611)
T KOG1173|consen 322 YLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEK 401 (611)
T ss_pred HHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHccccccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCCCCCcchHHHHHHHHHHHHHhCCHHHHHHHHH
Q psy9209 200 CYNKSRAIGDADGKALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQ 279 (349)
Q Consensus 200 ~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 279 (349)
+|.+++.+.|.+|-++..+|.+.+..+.+.+|..+|+.++..-+.. ....+.....+.+||.++.+++.+++|+.+++
T Consensus 402 Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~--~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q 479 (611)
T KOG1173|consen 402 FFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSV--LNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQ 479 (611)
T ss_pred HHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhc--cccccchhHHHHhHHHHHHHHhhHHHHHHHHH
Confidence 9999999999999999999999999999999999999999554442 11222356779999999999999999999999
Q ss_pred HHHcccCChHHHHHHHHHHHHHcCCCCCchhHHHHhhhcCCCCCC
Q psy9209 280 KCLQHEETAEEAKSLLRSIAQKRQPDESSSQPMECAVVLDPVPPS 324 (349)
Q Consensus 280 ~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~ 324 (349)
+++.+.|.+..++..+|.++..+|+++.|++.|.+++.++|++..
T Consensus 480 ~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~ 524 (611)
T KOG1173|consen 480 KALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIF 524 (611)
T ss_pred HHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHH
Confidence 999999999999999999999999999999999999999999854
No 25
>KOG2002|consensus
Probab=99.96 E-value=3.3e-27 Score=203.97 Aligned_cols=311 Identities=15% Similarity=0.146 Sum_probs=214.4
Q ss_pred hhhhHHhhCcHHHHHHHHHHHHHhccccCCCCCcchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhchHHHHHHHHH
Q psy9209 2 RNKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRS 81 (349)
Q Consensus 2 ~a~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~ 81 (349)
.|+.|..+|++++|..+|.+++...+.+. . ..++.+|..++..|+++.|+.+|++++...|++.+...+++.
T Consensus 313 ~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~------~--l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~ 384 (1018)
T KOG2002|consen 313 LGRSYHAQGDFEKAFKYYMESLKADNDNF------V--LPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGC 384 (1018)
T ss_pred HHHHHHhhccHHHHHHHHHHHHccCCCCc------c--ccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHh
Confidence 47899999999999999999995433332 1 458999999999999999999999999999998887777766
Q ss_pred HHHhc-CCCcchHHHHHHHHHHHhhCcc--------------------------------------cHHHHHHHHHHHHh
Q psy9209 82 IAQKR-QPDESSSQAVLYFQRALKLNPN--------------------------------------YLGVWTLLGHEYME 122 (349)
Q Consensus 82 ~~~~~-~~~~~~~~A~~~~~~~~~~~~~--------------------------------------~~~~~~~la~~~~~ 122 (349)
+.... ......+.|..+..++++..|. .++..+++|..++.
T Consensus 385 Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~ 464 (1018)
T KOG2002|consen 385 LYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQTDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFR 464 (1018)
T ss_pred HHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHH
Confidence 54332 1111223333333333333222 12333444555555
Q ss_pred cCChHHHHHHHHHHHH--------------------------------------------hCcccHHHHHHHHHHHHHhC
Q psy9209 123 MKNTNAAIQCYRQAIE--------------------------------------------INNLDYRAWYGLGQTYEILR 158 (349)
Q Consensus 123 ~~~~~~A~~~~~~a~~--------------------------------------------~~~~~~~~~~~l~~~~~~~~ 158 (349)
.|++++|...|.+++. ..|...+++..+|.+....+
T Consensus 465 ~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~ 544 (1018)
T KOG2002|consen 465 LGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKN 544 (1018)
T ss_pred hcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhcc
Confidence 5555555555555544 44444444444444444444
Q ss_pred CHHHHHHHHHHHHhcCCCChHHHHHHHHHHH------------------------------------------------H
Q psy9209 159 LPYYGLYYYKQAHMVRPNDPRMLTALGEAFE------------------------------------------------K 190 (349)
Q Consensus 159 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~------------------------------------------------~ 190 (349)
...+|...+..++..+..++.++..+|.++. .
T Consensus 545 ~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~ 624 (1018)
T KOG2002|consen 545 NLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKE 624 (1018)
T ss_pred CcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHH
Confidence 4444455555555444444444444443333 2
Q ss_pred hhCHHHHHHHHHHHHccccccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCCCCCcchHHHHHHHHHHHHHhCC
Q psy9209 191 QEKISEAMKCYNKSRAIGDADGKALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANN 270 (349)
Q Consensus 191 ~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 270 (349)
.+.+++|+.+|.+++..+|.+..+-..+|.++...|++.+|..+|.++.+-..+ ...+|.++|.||..+|+
T Consensus 625 kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~---------~~dv~lNlah~~~e~~q 695 (1018)
T KOG2002|consen 625 KKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSD---------FEDVWLNLAHCYVEQGQ 695 (1018)
T ss_pred HHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhh---------CCceeeeHHHHHHHHHH
Confidence 234566777777777777777777777777777777777777777777665444 67899999999999999
Q ss_pred HHHHHHHHHHHHccc--CChHHHHHHHHHHHHHcCCCCCchhHHHHhhhcCCCCCCccccC
Q psy9209 271 LDTAYKCAQKCLQHE--ETAEEAKSLLRSIAQKRQPDESSSQPMECAVVLDPVPPSTRSSK 329 (349)
Q Consensus 271 ~~~A~~~~~~a~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~ 329 (349)
|..|++.|+.+++.. .++.++...||.++...|.+.+|.+...+++.+.|.++.+..++
T Consensus 696 y~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~ 756 (1018)
T KOG2002|consen 696 YRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNL 756 (1018)
T ss_pred HHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHH
Confidence 999999999998764 46789999999999999999999999999999999999887766
No 26
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.96 E-value=4e-28 Score=196.71 Aligned_cols=262 Identities=16% Similarity=0.118 Sum_probs=123.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhh-h-hhchHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhCcccHHHHHHHHHHH
Q psy9209 43 KYLANHHLKANNLDTAYKCAQKCLQ-H-EETAEEAKSLLRSIAQKRQPDESSSQAVLYFQRALKLNPNYLGVWTLLGHEY 120 (349)
Q Consensus 43 ~~l~~~~~~~~~~~~A~~~~~~~l~-~-~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 120 (349)
..+|.+++..|++++|++++.+.+. . .|+++..|..++.++.. .++++.|+..|++++..++..+..+..++.+
T Consensus 12 l~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~---~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l- 87 (280)
T PF13429_consen 12 LRLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWS---LGDYDEAIEAYEKLLASDKANPQDYERLIQL- 87 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccc---ccccccccccccccccccccccccccccccc-
Confidence 3669999999999999999976654 4 47888887777777665 4899999999999999999988888888888
Q ss_pred HhcCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC--CCChHHHHHHHHHHHHhhCHHHHH
Q psy9209 121 MEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVR--PNDPRMLTALGEAFEKQEKISEAM 198 (349)
Q Consensus 121 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~ 198 (349)
...+++++|+.+++++.+..+ ++..+.....++...++++++...++++.... +.++.+|..+|.++.+.|++++|+
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~~-~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~ 166 (280)
T PF13429_consen 88 LQDGDPEEALKLAEKAYERDG-DPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKAL 166 (280)
T ss_dssp -------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHH
T ss_pred ccccccccccccccccccccc-ccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 799999999999999988654 56777888889999999999999999977654 678899999999999999999999
Q ss_pred HHHHHHHccccccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCCCCCcchHHHHHHHHHHHHHhCCHHHHHHHH
Q psy9209 199 KCYNKSRAIGDADGKALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCA 278 (349)
Q Consensus 199 ~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 278 (349)
.+|+++++.+|+++.+...++.++...|+.+++...+.......|. ++..+..+|.++...|++++|+.++
T Consensus 167 ~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~---------~~~~~~~la~~~~~lg~~~~Al~~~ 237 (280)
T PF13429_consen 167 RDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPD---------DPDLWDALAAAYLQLGRYEEALEYL 237 (280)
T ss_dssp HHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HT---------SCCHCHHHHHHHHHHT-HHHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcC---------HHHHHHHHHHHhccccccccccccc
Confidence 9999999999999999999999999999999999999988887777 6778899999999999999999999
Q ss_pred HHHHcccCChHHHHHHHHHHHHHcCCCCCchhHHHHhhhc
Q psy9209 279 QKCLQHEETAEEAKSLLRSIAQKRQPDESSSQPMECAVVL 318 (349)
Q Consensus 279 ~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 318 (349)
++++..+|+++.....++.++...|+.++|..++++++..
T Consensus 238 ~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~~ 277 (280)
T PF13429_consen 238 EKALKLNPDDPLWLLAYADALEQAGRKDEALRLRRQALRL 277 (280)
T ss_dssp HHHHHHSTT-HHHHHHHHHHHT------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccc
Confidence 9999999999999999999999999999999999998753
No 27
>KOG2076|consensus
Probab=99.95 E-value=2.5e-24 Score=185.08 Aligned_cols=294 Identities=15% Similarity=0.113 Sum_probs=247.6
Q ss_pred hhhHHhhCcHHHHHHHHHHHHHhccccCCCCCcchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhchHHHHHHHHHH
Q psy9209 3 NKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSI 82 (349)
Q Consensus 3 a~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~ 82 (349)
|......|++++|..++.++|.+.|... .+|+.||.+|.++|+.+++...+-.+-.++|.+.+.|..++.+
T Consensus 146 AN~lfarg~~eeA~~i~~EvIkqdp~~~---------~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladl 216 (895)
T KOG2076|consen 146 ANNLFARGDLEEAEEILMEVIKQDPRNP---------IAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADL 216 (895)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhCccch---------hhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHH
Confidence 5667778999999999999996554443 5799999999999999999999999999999999998888877
Q ss_pred HHhcCCCcchHHHHHHHHHHHhhCcccHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCccc-----HHHHHHHHHHHHHh
Q psy9209 83 AQKRQPDESSSQAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLD-----YRAWYGLGQTYEIL 157 (349)
Q Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~-----~~~~~~l~~~~~~~ 157 (349)
... .|++.+|.-+|.++++.+|.+.......+.+|.+.|+...|...|.+++...|.. .......+..+...
T Consensus 217 s~~---~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~ 293 (895)
T KOG2076|consen 217 SEQ---LGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITH 293 (895)
T ss_pred HHh---cccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHh
Confidence 665 4999999999999999999999999999999999999999999999999998832 22334557777788
Q ss_pred CCHHHHHHHHHHHHhcC--CCChHHHHHHHHHHHHhhCHHHHHHHHHHHHcc----------------------------
Q psy9209 158 RLPYYGLYYYKQAHMVR--PNDPRMLTALGEAFEKQEKISEAMKCYNKSRAI---------------------------- 207 (349)
Q Consensus 158 ~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~---------------------------- 207 (349)
++-+.|++.++.++... ....+.+..++.++....+++.|..........
T Consensus 294 ~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~ 373 (895)
T KOG2076|consen 294 NERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKE 373 (895)
T ss_pred hHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCC
Confidence 88899999999988832 223345667777777777777777666554430
Q ss_pred -----------------------------------cc-ccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCCCCC
Q psy9209 208 -----------------------------------GD-ADGKALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDK 251 (349)
Q Consensus 208 -----------------------------------~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 251 (349)
.| +.++.+..++..+...|++.+|+.+|..+....+..
T Consensus 374 ~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~------ 447 (895)
T KOG2076|consen 374 LSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQ------ 447 (895)
T ss_pred CCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCcccc------
Confidence 00 125677889999999999999999999988766552
Q ss_pred cchHHHHHHHHHHHHHhCCHHHHHHHHHHHHcccCChHHHHHHHHHHHHHcCCCCCchhHHHHhh
Q psy9209 252 TCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDESSSQPMECAV 316 (349)
Q Consensus 252 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 316 (349)
...+|+.+|.+|..+|.+++|+++|++++...|++.+++..|+.++..+|+.++|.+.+++..
T Consensus 448 --~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~ 510 (895)
T KOG2076|consen 448 --NAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQII 510 (895)
T ss_pred --chhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhccc
Confidence 578999999999999999999999999999999999999999999999999999999998877
No 28
>PRK12370 invasion protein regulator; Provisional
Probab=99.95 E-value=6.5e-25 Score=193.27 Aligned_cols=267 Identities=14% Similarity=0.052 Sum_probs=223.3
Q ss_pred HHHHHHHHHHhc---CCHHHHHHHHHHHhhhhhchHHHHHHHHHHHHhc------CCCcchHHHHHHHHHHHhhCcccHH
Q psy9209 41 AFKYLANHHLKA---NNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKR------QPDESSSQAVLYFQRALKLNPNYLG 111 (349)
Q Consensus 41 ~~~~l~~~~~~~---~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~------~~~~~~~~A~~~~~~~~~~~~~~~~ 111 (349)
.++..|...... +++++|+..|+++++.+|+++.++..++.+.... ...+++++|+..++++++++|+++.
T Consensus 260 ~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~ 339 (553)
T PRK12370 260 MVYLRGKHELNQYTPYSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQ 339 (553)
T ss_pred HHHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHH
Confidence 455667655433 4578999999999999999988876665432221 1346689999999999999999999
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHh
Q psy9209 112 VWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQ 191 (349)
Q Consensus 112 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 191 (349)
++..+|.++...|++++|+..|+++++++|+++.+++.+|.++...|++++|+..++++++++|.++..+..++.++...
T Consensus 340 a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~ 419 (553)
T PRK12370 340 ALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYYH 419 (553)
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999988777777778889
Q ss_pred hCHHHHHHHHHHHHccc-cccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCCCCCcchHHHHHHHHHHHHHhCC
Q psy9209 192 EKISEAMKCYNKSRAIG-DADGKALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANN 270 (349)
Q Consensus 192 ~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 270 (349)
|++++|+..+++++... |+++..+..+|.++...|++++|...+.+.....|. .......++..|...|+
T Consensus 420 g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~---------~~~~~~~l~~~~~~~g~ 490 (553)
T PRK12370 420 TGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEIT---------GLIAVNLLYAEYCQNSE 490 (553)
T ss_pred cCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccch---------hHHHHHHHHHHHhccHH
Confidence 99999999999999874 778889999999999999999999999998887776 67888889999888884
Q ss_pred HHHHHHHHHHHHcccCChHHHHHHHHHHHHHcCCCCCchhHHHHhhhcC
Q psy9209 271 LDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDESSSQPMECAVVLD 319 (349)
Q Consensus 271 ~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 319 (349)
+|...+++.++.....+.....+..++...|+.+.+..+ +++.+.+
T Consensus 491 --~a~~~l~~ll~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 491 --RALPTIREFLESEQRIDNNPGLLPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred --HHHHHHHHHHHHhhHhhcCchHHHHHHHHHhhhHHHHHH-HHhhccc
Confidence 788878777665433333334477888888888888777 6665543
No 29
>KOG1173|consensus
Probab=99.95 E-value=1.3e-24 Score=177.87 Aligned_cols=279 Identities=18% Similarity=0.136 Sum_probs=246.7
Q ss_pred hhhhHHhhCcHHHHHHHHHHHHHhccccCCCCCcchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhchHHHHHHHHH
Q psy9209 2 RNKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRS 81 (349)
Q Consensus 2 ~a~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~ 81 (349)
+|..+...+++.+..++++..++..|. +.. ..-..+| ++...|+..+-...-.+.+...|+.+..|+..+.
T Consensus 250 ~ad~~y~~c~f~~c~kit~~lle~dpf------h~~--~~~~~ia-~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~ 320 (611)
T KOG1173|consen 250 KADRLYYGCRFKECLKITEELLEKDPF------HLP--CLPLHIA-CLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGC 320 (611)
T ss_pred HHHHHHHcChHHHHHHHhHHHHhhCCC------Ccc--hHHHHHH-HHHHhcccchHHHHHHHHHHhCCCCCcchhhHHH
Confidence 466778889999999999999853332 222 2344566 8889999888888888889999999998877665
Q ss_pred HHHhcCCCcchHHHHHHHHHHHhhCcccHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHH
Q psy9209 82 IAQKRQPDESSSQAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPY 161 (349)
Q Consensus 82 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~ 161 (349)
. |...|++.+|..+|.++..++|..+.+|...|..+...|..++|+.+|..|-++-|........+|.-|...++++
T Consensus 321 Y---Yl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~k 397 (611)
T KOG1173|consen 321 Y---YLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLK 397 (611)
T ss_pred H---HHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHH
Confidence 4 4445999999999999999999999999999999999999999999999999999998888899999999999999
Q ss_pred HHHHHHHHHHhcCCCChHHHHHHHHHHHHhhCHHHHHHHHHHHHccc-------cccHHHHHHHHHHHHhcCcHHHHHHH
Q psy9209 162 YGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIG-------DADGKALFKLAKLYDKLNETEAAADL 234 (349)
Q Consensus 162 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-------~~~~~~~~~l~~~~~~~~~~~~A~~~ 234 (349)
-|.++|.+++.+.|.+|-++..+|.+.+..+.|.+|..+|+.++..- +.....+.++|.++.+++.+++|+..
T Consensus 398 LAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~ 477 (611)
T KOG1173|consen 398 LAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDY 477 (611)
T ss_pred HHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHH
Confidence 99999999999999999999999999999999999999999998431 12345689999999999999999999
Q ss_pred HHHHHhcccccCCCCCCcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHcccCChHHHHHHHHHHHHH
Q psy9209 235 FMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQK 301 (349)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~ 301 (349)
+++++.+.|. +..++..+|.+|..+|+++.|+.+|.+++.+.|++..+...|+.+...
T Consensus 478 ~q~aL~l~~k---------~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~aie~ 535 (611)
T KOG1173|consen 478 YQKALLLSPK---------DASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLAIED 535 (611)
T ss_pred HHHHHHcCCC---------chhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHHHh
Confidence 9999999999 899999999999999999999999999999999998887777765543
No 30
>KOG0624|consensus
Probab=99.95 E-value=8.7e-25 Score=168.72 Aligned_cols=310 Identities=11% Similarity=0.024 Sum_probs=254.7
Q ss_pred hhhHHhhCcHHHHHHHHHHHHHhccccCCCCCcchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhchHHHHHHHHHH
Q psy9209 3 NKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSI 82 (349)
Q Consensus 3 a~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~ 82 (349)
++-+...|++..|+..|..+++ .+|++ +.+++..|.+|+.+|+-.-|+.-+.+++++.|+...+....
T Consensus 45 Gk~lla~~Q~sDALt~yHaAve------~dp~~---Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQR--- 112 (504)
T KOG0624|consen 45 GKELLARGQLSDALTHYHAAVE------GDPNN---YQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQR--- 112 (504)
T ss_pred HHHHHHhhhHHHHHHHHHHHHc------CCchh---HHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHh---
Confidence 3456678899999999999884 33333 26788999999999999999999999999999887764433
Q ss_pred HHhcCCCcchHHHHHHHHHHHhhCcccHH---HH------------HHHHHHHHhcCChHHHHHHHHHHHHhCcccHHHH
Q psy9209 83 AQKRQPDESSSQAVLYFQRALKLNPNYLG---VW------------TLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAW 147 (349)
Q Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~---~~------------~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~ 147 (349)
+.++.++|.+++|..-|+.+++.+|++.. +. ......+...|+...|++.....+++.|-+...+
T Consensus 113 g~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~ 192 (504)
T KOG0624|consen 113 GVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLR 192 (504)
T ss_pred chhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHH
Confidence 45577789999999999999998885422 22 2233445667899999999999999999999999
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhCHHHHHHHHHHHHccccccHHHHHH----------
Q psy9209 148 YGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKALFK---------- 217 (349)
Q Consensus 148 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~---------- 217 (349)
...+.+|...|++..|+.-++.+-++..++.+.++.++.+++..|+.+.++...+++++++|++...+-.
T Consensus 193 ~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~YKklkKv~K~ 272 (504)
T KOG0624|consen 193 QARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFPFYKKLKKVVKS 272 (504)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999986443311
Q ss_pred --HHHHHHhcCcHHHHHHHHHHHHhcccccCCCCCCcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHcccCChHHHHHHH
Q psy9209 218 --LAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLL 295 (349)
Q Consensus 218 --l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l 295 (349)
-+.-....++|.+++...++.++..|. ..+.....+..+..|+..-|++.+|+..+.+++.++|++..++...
T Consensus 273 les~e~~ie~~~~t~cle~ge~vlk~ep~-----~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dR 347 (504)
T KOG0624|consen 273 LESAEQAIEEKHWTECLEAGEKVLKNEPE-----ETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDR 347 (504)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHhcCCc-----ccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHH
Confidence 123345678888899999999988887 2233455566678899999999999999999999999999999999
Q ss_pred HHHHHHcCCCCCchhHHHHhhhcCCCCCCccccC
Q psy9209 296 RSIAQKRQPDESSSQPMECAVVLDPVPPSTRSSK 329 (349)
Q Consensus 296 ~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~ 329 (349)
+..+.....++.|+..|+++.+.+|++..+...+
T Consensus 348 AeA~l~dE~YD~AI~dye~A~e~n~sn~~~reGl 381 (504)
T KOG0624|consen 348 AEAYLGDEMYDDAIHDYEKALELNESNTRAREGL 381 (504)
T ss_pred HHHHhhhHHHHHHHHHHHHHHhcCcccHHHHHHH
Confidence 9999999999999999999999999998766543
No 31
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.94 E-value=6.9e-27 Score=189.49 Aligned_cols=261 Identities=19% Similarity=0.200 Sum_probs=124.7
Q ss_pred hhhHHhhCcHHHHHHHHHHHHHhccccCCCCCcchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhchHHHHHHHHHH
Q psy9209 3 NKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSI 82 (349)
Q Consensus 3 a~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~ 82 (349)
|+++...|++++|++++.+.+.... ++++. ..|..+|.+....++++.|+..|++++..++.++.....+..+
T Consensus 15 A~~~~~~~~~~~Al~~L~~~~~~~~----~~~~~---~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l 87 (280)
T PF13429_consen 15 ARLLYQRGDYEKALEVLKKAAQKIA----PPDDP---EYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL 87 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccc----ccccc---ccccccccccccccccccccccccccccccccccccccccccc
Confidence 7889999999999999977663331 11121 4688899999999999999999999999988877765444444
Q ss_pred HHhcCCCcchHHHHHHHHHHHhhCcccHHHHHHHHHHHHhcCChHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHhCCH
Q psy9209 83 AQKRQPDESSSQAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEIN--NLDYRAWYGLGQTYEILRLP 160 (349)
Q Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~l~~~~~~~~~~ 160 (349)
...+++++|+.+++++.+..+ ++..+.....++...++++++...++++.... +.++..|..+|.++...|++
T Consensus 88 ----~~~~~~~~A~~~~~~~~~~~~-~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~ 162 (280)
T PF13429_consen 88 ----LQDGDPEEALKLAEKAYERDG-DPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDP 162 (280)
T ss_dssp -----------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHH
T ss_pred ----ccccccccccccccccccccc-ccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCH
Confidence 346999999999999988665 46777788889999999999999999987654 67789999999999999999
Q ss_pred HHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhCHHHHHHHHHHHHccccccHHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Q psy9209 161 YYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKLAKLYDKLNETEAAADLFMEFVS 240 (349)
Q Consensus 161 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 240 (349)
++|+..++++++.+|+++.+...++.++...|+++++...+.......|.++..+..+|.++..+|++++|+.++++++.
T Consensus 163 ~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~ 242 (280)
T PF13429_consen 163 DKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALK 242 (280)
T ss_dssp HHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccc
Confidence 99999999999999999999999999999999999999999998888888999999999999999999999999999999
Q ss_pred cccccCCCCCCcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHcc
Q psy9209 241 KLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQH 284 (349)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 284 (349)
..|. ++..+..+|.++...|+.++|..+.++++..
T Consensus 243 ~~p~---------d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~~ 277 (280)
T PF13429_consen 243 LNPD---------DPLWLLAYADALEQAGRKDEALRLRRQALRL 277 (280)
T ss_dssp HSTT----------HHHHHHHHHHHT------------------
T ss_pred cccc---------ccccccccccccccccccccccccccccccc
Confidence 9998 8999999999999999999999999988653
No 32
>KOG1129|consensus
Probab=99.94 E-value=2.4e-25 Score=170.72 Aligned_cols=277 Identities=13% Similarity=0.115 Sum_probs=250.5
Q ss_pred HHHHhcCCHHHHHHHHHHHhhhhh-------chHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhCcccHHHHHHHHHH
Q psy9209 47 NHHLKANNLDTAYKCAQKCLQHEE-------TAEEAKSLLRSIAQKRQPDESSSQAVLYFQRALKLNPNYLGVWTLLGHE 119 (349)
Q Consensus 47 ~~~~~~~~~~~A~~~~~~~l~~~~-------~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 119 (349)
.+++..++...|-......++..- .-..-|++-..++.+|.+.|.+.+|.+.++.+++..|. ++.+..++.+
T Consensus 187 y~fyhenDv~~aH~~~~~~~~~~~a~~s~~~~~~~dwwWk~Q~gkCylrLgm~r~AekqlqssL~q~~~-~dTfllLskv 265 (478)
T KOG1129|consen 187 YLFYHENDVQKAHSLCQAVLEVERAKPSGSTGCTLDWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQFPH-PDTFLLLSKV 265 (478)
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHhccccccccchHhHHHHHHHHHHHHHhcChhhhHHHHHHHhhcCCc-hhHHHHHHHH
Confidence 345667777777766666554421 12234677788999999999999999999999998775 8899999999
Q ss_pred HHhcCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhCHHHHHH
Q psy9209 120 YMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMK 199 (349)
Q Consensus 120 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 199 (349)
|.+..++..|+..+.+.++..|.+...+..++.++..++++++|+++|+.+++.+|.+.++...+|.-|+-.++++-|+.
T Consensus 266 Y~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~Alr 345 (478)
T KOG1129|consen 266 YQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALR 345 (478)
T ss_pred HHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHccccccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCCCCCcchHHHHHHHHHHHHHhCCHHHHHHHHH
Q psy9209 200 CYNKSRAIGDADGKALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQ 279 (349)
Q Consensus 200 ~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 279 (349)
+|++.+++.-.+++.+.++|.|+...++++-++..|++++....+ .....++|+++|.+....|++.-|..+|+
T Consensus 346 yYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~------~~~aaDvWYNlg~vaV~iGD~nlA~rcfr 419 (478)
T KOG1129|consen 346 YYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQ------PGQAADVWYNLGFVAVTIGDFNLAKRCFR 419 (478)
T ss_pred HHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccC------cchhhhhhhccceeEEeccchHHHHHHHH
Confidence 999999999999999999999999999999999999999987654 33478999999999999999999999999
Q ss_pred HHHcccCChHHHHHHHHHHHHHcCCCCCchhHHHHhhhcCCCCCCccccCC
Q psy9209 280 KCLQHEETAEEAKSLLRSIAQKRQPDESSSQPMECAVVLDPVPPSTRSSKF 330 (349)
Q Consensus 280 ~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~ 330 (349)
-++..++++.+++.+|+.+..+.|+.++|..++..+-...|+-.+...++-
T Consensus 420 laL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~m~E~~~Nl~ 470 (478)
T KOG1129|consen 420 LALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMPDMAEVTTNLQ 470 (478)
T ss_pred HHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCcccccccccee
Confidence 999999999999999999999999999999999999999999877776653
No 33
>PRK12370 invasion protein regulator; Provisional
Probab=99.94 E-value=2.3e-24 Score=189.77 Aligned_cols=218 Identities=17% Similarity=0.099 Sum_probs=199.1
Q ss_pred CcchHHHHHHHHHHHhhCcccHHHHHHHHHHHHhc---------CChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCC
Q psy9209 89 DESSSQAVLYFQRALKLNPNYLGVWTLLGHEYMEM---------KNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRL 159 (349)
Q Consensus 89 ~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~---------~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~ 159 (349)
.+++++|+..|+++++++|+++.++..+|.++... +++++|+..++++++++|+++.++..+|.++...|+
T Consensus 274 ~~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~ 353 (553)
T PRK12370 274 PYSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSE 353 (553)
T ss_pred HHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccC
Confidence 46788999999999999999999999999887643 348999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhCHHHHHHHHHHHHccccccHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Q psy9209 160 PYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKLAKLYDKLNETEAAADLFMEFV 239 (349)
Q Consensus 160 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 239 (349)
+++|+..|+++++++|+++.+++.+|.++...|++++|+..++++++++|.++..+..++.++...|++++|+..+++++
T Consensus 354 ~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l 433 (553)
T PRK12370 354 YIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYYHTGIDDAIRLGDELR 433 (553)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999988877777777888999999999999999
Q ss_pred hcc-cccCCCCCCcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHcccCChHHHHHHHHHHHHHcCCCCCchhHHHHhhh
Q psy9209 240 SKL-DTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDESSSQPMECAVV 317 (349)
Q Consensus 240 ~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 317 (349)
... |. .+..+..+|.++...|++++|...+.++....|....+...++.++...|+ .|...+++.++
T Consensus 434 ~~~~p~---------~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~a~~~l~~ll~ 501 (553)
T PRK12370 434 SQHLQD---------NPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNSE--RALPTIREFLE 501 (553)
T ss_pred Hhcccc---------CHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccHH--HHHHHHHHHHH
Confidence 875 55 688899999999999999999999999999999999999999999888884 77776766554
No 34
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.94 E-value=4.2e-23 Score=175.58 Aligned_cols=295 Identities=10% Similarity=0.007 Sum_probs=238.5
Q ss_pred hhhhHHhhCcHHHHHHHHHHHHHhccccCCCCCcchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhchHH-HHHHHH
Q psy9209 2 RNKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEE-AKSLLR 80 (349)
Q Consensus 2 ~a~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~-~~~~l~ 80 (349)
+|.+....|+++.|.+.+.++.+. .|++. ..+...|.++..+|+++.|..++.++.+..|++.. .....
T Consensus 90 ~glla~~~g~~~~A~~~l~~~~~~------~~~~~---~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~- 159 (409)
T TIGR00540 90 EALLKLAEGDYAKAEKLIAKNADH------AAEPV---LNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIAR- 159 (409)
T ss_pred HHHHHHhCCCHHHHHHHHHHHhhc------CCCCH---HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHH-
Confidence 456677899999999999887732 22221 35677899999999999999999999988888753 32222
Q ss_pred HHHHhcCCCcchHHHHHHHHHHHhhCcccHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCcccHHHH----HHHHHHHHH
Q psy9209 81 SIAQKRQPDESSSQAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAW----YGLGQTYEI 156 (349)
Q Consensus 81 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~----~~l~~~~~~ 156 (349)
+..+...|+++.|...+++.++..|+++.++..++.++...|++++|.+.+.+..+....++... .....-+..
T Consensus 160 --a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~ 237 (409)
T TIGR00540 160 --TRILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLD 237 (409)
T ss_pred --HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 34455579999999999999999999999999999999999999999999999998643333222 122222244
Q ss_pred hCCHHHHHHHHHHHHhcCC----CChHHHHHHHHHHHHhhCHHHHHHHHHHHHccccccHHHH--HHHHHHHHhcCcHHH
Q psy9209 157 LRLPYYGLYYYKQAHMVRP----NDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKAL--FKLAKLYDKLNETEA 230 (349)
Q Consensus 157 ~~~~~~A~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~--~~l~~~~~~~~~~~~ 230 (349)
.+..+++...+.++....| +++..+..++..+...|++++|...++++++..|++.... ..........++.+.
T Consensus 238 ~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~ 317 (409)
T TIGR00540 238 EAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEK 317 (409)
T ss_pred HHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHH
Confidence 4555666678888888777 5889999999999999999999999999999999887532 223333445688899
Q ss_pred HHHHHHHHHhcccccCCCCCCcchH--HHHHHHHHHHHHhCCHHHHHHHHH--HHHcccCChHHHHHHHHHHHHHcCCCC
Q psy9209 231 AADLFMEFVSKLDTFAAPPDKTCGF--FAFKYLANHHLKANNLDTAYKCAQ--KCLQHEETAEEAKSLLRSIAQKRQPDE 306 (349)
Q Consensus 231 A~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~--~a~~~~~~~~~~~~~l~~~~~~~~~~~ 306 (349)
+++.++++++..|+ ++ ..+..+|.++.+.|++++|.++|+ .+++..|+... ...++.++...|+.+
T Consensus 318 ~~~~~e~~lk~~p~---------~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~-~~~La~ll~~~g~~~ 387 (409)
T TIGR00540 318 LEKLIEKQAKNVDD---------KPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDAND-LAMAADAFDQAGDKA 387 (409)
T ss_pred HHHHHHHHHHhCCC---------ChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHH-HHHHHHHHHHcCCHH
Confidence 99999999999998 67 888899999999999999999999 57788888877 449999999999999
Q ss_pred CchhHHHHhhhc
Q psy9209 307 SSSQPMECAVVL 318 (349)
Q Consensus 307 ~A~~~~~~a~~~ 318 (349)
+|.+++++++..
T Consensus 388 ~A~~~~~~~l~~ 399 (409)
T TIGR00540 388 EAAAMRQDSLGL 399 (409)
T ss_pred HHHHHHHHHHHH
Confidence 999999998653
No 35
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.93 E-value=7.3e-24 Score=155.00 Aligned_cols=205 Identities=19% Similarity=0.107 Sum_probs=154.1
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Q psy9209 111 GVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEK 190 (349)
Q Consensus 111 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 190 (349)
.+...+|.-|+..|++..|...++++++.+|++..+|..++.+|...|+.+.|.+.|+++++++|++.+++++.|..++.
T Consensus 36 ~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~ 115 (250)
T COG3063 36 KARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCA 115 (250)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHh
Confidence 45677777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred hhCHHHHHHHHHHHHcc--ccccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCCCCCcchHHHHHHHHHHHHHh
Q psy9209 191 QEKISEAMKCYNKSRAI--GDADGKALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKA 268 (349)
Q Consensus 191 ~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 268 (349)
+|++++|...|++++.. .+..+..+.++|.|..+.|+++.|..+|++++..+|+ .+.....++..++..
T Consensus 116 qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~---------~~~~~l~~a~~~~~~ 186 (250)
T COG3063 116 QGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ---------FPPALLELARLHYKA 186 (250)
T ss_pred CCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC---------CChHHHHHHHHHHhc
Confidence 77777777777777765 3455667777777777777777777777777777777 677777777777777
Q ss_pred CCHHHHHHHHHHHHcccCChHHHHHHHHHHHHHcCCCCCchhHHHHhhhcCCCCCC
Q psy9209 269 NNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDESSSQPMECAVVLDPVPPS 324 (349)
Q Consensus 269 g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~ 324 (349)
|++..|..++++.....+-..+.+.+...+....|+.+.+..+=.+.....|..++
T Consensus 187 ~~y~~Ar~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~e 242 (250)
T COG3063 187 GDYAPARLYLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSEE 242 (250)
T ss_pred ccchHHHHHHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHH
Confidence 77777777777777666666666666667777777777777776666667776554
No 36
>KOG0495|consensus
Probab=99.93 E-value=1.3e-22 Score=169.08 Aligned_cols=308 Identities=12% Similarity=0.115 Sum_probs=275.1
Q ss_pred hhCcHHHHHHHHHHHHHhccccCCCCCcchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhchHHHHHHHHHHHHhcC
Q psy9209 8 KLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQ 87 (349)
Q Consensus 8 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~ 87 (349)
..|..+.-..++++++...|... ..|...+..+...|+...|...+.++++.+|++.+.|..-..+ ..
T Consensus 562 ~hgt~Esl~Allqkav~~~pkae---------~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKl---e~ 629 (913)
T KOG0495|consen 562 SHGTRESLEALLQKAVEQCPKAE---------ILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKL---EF 629 (913)
T ss_pred hcCcHHHHHHHHHHHHHhCCcch---------hHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHH---hh
Confidence 35777777788888886555333 5788888899999999999999999999999988887655444 44
Q ss_pred CCcchHHHHHHHHHHHhhCcccHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHHHHHHHH
Q psy9209 88 PDESSSQAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYY 167 (349)
Q Consensus 88 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 167 (349)
...+++.|..+|.++....|. ..+|+.-+.+...+++.++|+.+++++++..|.....|..+|+++..+++.+.|...|
T Consensus 630 en~e~eraR~llakar~~sgT-eRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY 708 (913)
T KOG0495|consen 630 ENDELERARDLLAKARSISGT-ERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAY 708 (913)
T ss_pred ccccHHHHHHHHHHHhccCCc-chhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 568899999999999987776 6788888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCChHHHHHHHHHHHHhhCHHHHHHHHHHHHccccccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCC
Q psy9209 168 KQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAA 247 (349)
Q Consensus 168 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 247 (349)
...++..|..+..|..++.+-...|+.-.|...++++.-.+|++...|......-.+.|+.++|...+.++++..|.++.
T Consensus 709 ~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~ 788 (913)
T KOG0495|consen 709 LQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGL 788 (913)
T ss_pred HhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998751
Q ss_pred ---------------------CCCCcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHcccCChHHHHHHHHHHHHHcCCCC
Q psy9209 248 ---------------------PPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDE 306 (349)
Q Consensus 248 ---------------------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~ 306 (349)
......++.++...|.++....++++|.++|.++++.+|++.++|.++-..+...|.-+
T Consensus 789 LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~ee 868 (913)
T KOG0495|consen 789 LWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEE 868 (913)
T ss_pred hHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHH
Confidence 12233467888999999999999999999999999999999999999999999999999
Q ss_pred CchhHHHHhhhcCCCCCCcccc
Q psy9209 307 SSSQPMECAVVLDPVPPSTRSS 328 (349)
Q Consensus 307 ~A~~~~~~a~~~~p~~~~~~~~ 328 (349)
+-.+.+.+....+|.+...|..
T Consensus 869 d~kev~~~c~~~EP~hG~~W~a 890 (913)
T KOG0495|consen 869 DQKEVLKKCETAEPTHGELWQA 890 (913)
T ss_pred HHHHHHHHHhccCCCCCcHHHH
Confidence 9999999999999998876654
No 37
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.93 E-value=2.8e-23 Score=168.49 Aligned_cols=242 Identities=16% Similarity=0.052 Sum_probs=183.8
Q ss_pred HHhcCCHHHHHHHHHHHhhhhhchHHH-HHHHHHHHHhcCCCcchHHHHHHHHHHHhhCcccHHHHHHHHHHHHhcCChH
Q psy9209 49 HLKANNLDTAYKCAQKCLQHEETAEEA-KSLLRSIAQKRQPDESSSQAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTN 127 (349)
Q Consensus 49 ~~~~~~~~~A~~~~~~~l~~~~~~~~~-~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 127 (349)
....+..+.++..+.+++...|-++.. ...+...|..+...|++++|+..|+++++.+|+++.++..+|.++...|+++
T Consensus 36 ~~~~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~ 115 (296)
T PRK11189 36 LQPTLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFD 115 (296)
T ss_pred cCCchHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHH
Confidence 334466788999999999644322211 1224455566777799999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhCHHHHHHHHHHHHcc
Q psy9209 128 AAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAI 207 (349)
Q Consensus 128 ~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 207 (349)
+|+..|+++++++|++..++.++|.++...|++++|+..++++++.+|+++..... ..+....+++++|+..+.+.+..
T Consensus 116 ~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~-~~l~~~~~~~~~A~~~l~~~~~~ 194 (296)
T PRK11189 116 AAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPYRALW-LYLAESKLDPKQAKENLKQRYEK 194 (296)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHH-HHHHHccCCHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999998742221 22344577899999999877655
Q ss_pred ccccHHHHHHHHHHHHhcCcHHHHHHHHHHHH-------hcccccCCCCCCcchHHHHHHHHHHHHHhCCHHHHHHHHHH
Q psy9209 208 GDADGKALFKLAKLYDKLNETEAAADLFMEFV-------SKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQK 280 (349)
Q Consensus 208 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 280 (349)
.+... |. .+.+....|+..++ ..++.+. +..|. ..++|+.+|.++...|++++|+.+|++
T Consensus 195 ~~~~~--~~-~~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~---------~~ea~~~Lg~~~~~~g~~~~A~~~~~~ 261 (296)
T PRK11189 195 LDKEQ--WG-WNIVEFYLGKISEE-TLMERLKAGATDNTELAER---------LCETYFYLAKYYLSLGDLDEAAALFKL 261 (296)
T ss_pred CCccc--cH-HHHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHH---------HHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 33222 22 34555556666443 2333333 33333 678999999999999999999999999
Q ss_pred HHcccC-ChHHHHHHHHHHHHHcCC
Q psy9209 281 CLQHEE-TAEEAKSLLRSIAQKRQP 304 (349)
Q Consensus 281 a~~~~~-~~~~~~~~l~~~~~~~~~ 304 (349)
+++.+| +..+....+..+....+.
T Consensus 262 Al~~~~~~~~e~~~~~~e~~~~~~~ 286 (296)
T PRK11189 262 ALANNVYNFVEHRYALLELALLGQD 286 (296)
T ss_pred HHHhCCchHHHHHHHHHHHHHHHhh
Confidence 999986 777777766666554443
No 38
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.93 E-value=1.7e-22 Score=170.87 Aligned_cols=293 Identities=12% Similarity=0.099 Sum_probs=231.7
Q ss_pred hhhHHhhCcHHHHHHHHHHHHHhccccCCCCCcchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhchHHHHHHHHHH
Q psy9209 3 NKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSI 82 (349)
Q Consensus 3 a~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~ 82 (349)
|-+....|++++|.+...+.-+ ....| . ..+...+......|+++.|..++.++.+.+|++....... .
T Consensus 91 gl~a~~eGd~~~A~k~l~~~~~----~~~~p---~--l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~--~ 159 (398)
T PRK10747 91 ALLKLAEGDYQQVEKLMTRNAD----HAEQP---V--VNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEIT--R 159 (398)
T ss_pred HHHHHhCCCHHHHHHHHHHHHh----cccch---H--HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHH--H
Confidence 3445567999999977765442 11111 1 2344456666999999999999999999988875443222 2
Q ss_pred HHhcCCCcchHHHHHHHHHHHhhCcccHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCcccHH--------HHHHHHHHH
Q psy9209 83 AQKRQPDESSSQAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYR--------AWYGLGQTY 154 (349)
Q Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~--------~~~~l~~~~ 154 (349)
+..+...|++++|+..+++..+.+|+++.++..++.+|...|++++|++.+.+..+..+.++. ++..+....
T Consensus 160 a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~ 239 (398)
T PRK10747 160 VRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQA 239 (398)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 445566799999999999999999999999999999999999999999999998876554332 222222222
Q ss_pred HHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhCHHHHHHHHHHHHccccccHHHHHHHHHHHHhcCcHHHHHHH
Q psy9209 155 EILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKLAKLYDKLNETEAAADL 234 (349)
Q Consensus 155 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 234 (349)
....+.+...+.++..-...|+++.+...++..+...|+.++|...++++++..| ++......+.+ ..++.++++..
T Consensus 240 ~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~-~~~l~~l~~~l--~~~~~~~al~~ 316 (398)
T PRK10747 240 MADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQY-DERLVLLIPRL--KTNNPEQLEKV 316 (398)
T ss_pred HHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CHHHHHHHhhc--cCCChHHHHHH
Confidence 2334445555566665566778999999999999999999999999999999544 55555445544 45999999999
Q ss_pred HHHHHhcccccCCCCCCcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHcccCChHHHHHHHHHHHHHcCCCCCchhHHHH
Q psy9209 235 FMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDESSSQPMEC 314 (349)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 314 (349)
.++.++..|+ ++..+..+|.++...|++++|..+|+++++..|+... +..++.++...|+.++|..+|++
T Consensus 317 ~e~~lk~~P~---------~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~-~~~La~~~~~~g~~~~A~~~~~~ 386 (398)
T PRK10747 317 LRQQIKQHGD---------TPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYD-YAWLADALDRLHKPEEAAAMRRD 386 (398)
T ss_pred HHHHHhhCCC---------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHH-HHHHHHHHHHcCCHHHHHHHHHH
Confidence 9999999998 8999999999999999999999999999999999765 55899999999999999999999
Q ss_pred hhhcC
Q psy9209 315 AVVLD 319 (349)
Q Consensus 315 a~~~~ 319 (349)
++.+.
T Consensus 387 ~l~~~ 391 (398)
T PRK10747 387 GLMLT 391 (398)
T ss_pred HHhhh
Confidence 98764
No 39
>KOG1129|consensus
Probab=99.93 E-value=2e-24 Score=165.70 Aligned_cols=281 Identities=13% Similarity=0.118 Sum_probs=239.6
Q ss_pred hHHhhCcHHHHHHHHHHHHHh--ccccCCCCCcchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhchHHHHHHHHHH
Q psy9209 5 LYDKLNETEAAADLFMEFVSK--LDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSI 82 (349)
Q Consensus 5 ~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~ 82 (349)
+|...+|...|.......++. ..+.. ......-++--..+|.||+..|.+.+|.+.++.+++..|. ++.+ ..+
T Consensus 188 ~fyhenDv~~aH~~~~~~~~~~~a~~s~-~~~~~~dwwWk~Q~gkCylrLgm~r~AekqlqssL~q~~~-~dTf---llL 262 (478)
T KOG1129|consen 188 LFYHENDVQKAHSLCQAVLEVERAKPSG-STGCTLDWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQFPH-PDTF---LLL 262 (478)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHhccccc-cccchHhHHHHHHHHHHHHHhcChhhhHHHHHHHhhcCCc-hhHH---HHH
Confidence 455677777777665555431 11111 1111111233456999999999999999999999987765 3443 334
Q ss_pred HHhcCCCcchHHHHHHHHHHHhhCcccHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHHH
Q psy9209 83 AQKRQPDESSSQAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYY 162 (349)
Q Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~ 162 (349)
+.+|.+..++..|+..+.+.++..|.+......++.++..++++++|.++|+.+++.+|.+.++.-.+|..|+..++++-
T Consensus 263 skvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~ 342 (478)
T KOG1129|consen 263 SKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEM 342 (478)
T ss_pred HHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHH
Confidence 45677779999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCChHHHHHHHHHHHHhhCHHHHHHHHHHHHccc--c-ccHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Q psy9209 163 GLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIG--D-ADGKALFKLAKLYDKLNETEAAADLFMEFV 239 (349)
Q Consensus 163 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 239 (349)
|+.+|++.+++.-.+++.+.++|.|.+..++++-++..|++++... | .-.++|+++|.+....|++.-|..+|+-++
T Consensus 343 AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL 422 (478)
T KOG1129|consen 343 ALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLAL 422 (478)
T ss_pred HHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999873 3 357899999999999999999999999999
Q ss_pred hcccccCCCCCCcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHcccCChHHHHHHHHHHH
Q psy9209 240 SKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIA 299 (349)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~ 299 (349)
..+++ +.+++.+||.+-.+.|+.++|..+++.+....|+-.+...+++.+.
T Consensus 423 ~~d~~---------h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~m~E~~~Nl~~~s 473 (478)
T KOG1129|consen 423 TSDAQ---------HGEALNNLAVLAARSGDILGARSLLNAAKSVMPDMAEVTTNLQFMS 473 (478)
T ss_pred ccCcc---------hHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCccccccccceeEEe
Confidence 99998 8999999999999999999999999999999998877776665443
No 40
>KOG1174|consensus
Probab=99.93 E-value=2.2e-23 Score=164.64 Aligned_cols=276 Identities=13% Similarity=0.047 Sum_probs=206.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhchHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhCcccHHHHHHHHHH
Q psy9209 40 FAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDESSSQAVLYFQRALKLNPNYLGVWTLLGHE 119 (349)
Q Consensus 40 ~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 119 (349)
..+..+|.+++..|++++|+..|+++.-++|........++.+ +...|+++.-...-...+..+.....-|+.-+..
T Consensus 233 hLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~L---L~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~ 309 (564)
T KOG1174|consen 233 HLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVL---LGQEGGCEQDSALMDYLFAKVKYTASHWFVHAQL 309 (564)
T ss_pred HHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHH---HHhccCHhhHHHHHHHHHhhhhcchhhhhhhhhh
Confidence 4688899999999999999999999999999888776555544 3345777777777777777666666667777777
Q ss_pred HHhcCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhCHHHHHH
Q psy9209 120 YMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMK 199 (349)
Q Consensus 120 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 199 (349)
.+..+++..|+.+-++++..+|.+..++...|..+...|+.++|+-.|+.+..+.|...+.|..+..+|...|++.+|..
T Consensus 310 l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~ 389 (564)
T KOG1174|consen 310 LYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANA 389 (564)
T ss_pred hhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHH
Confidence 77777777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHccccccHHHHHHHH-HHHH-hcCcHHHHHHHHHHHHhcccccCCCCCCcchHHHHHHHHHHHHHhCCHHHHHHH
Q psy9209 200 CYNKSRAIGDADGKALFKLA-KLYD-KLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKC 277 (349)
Q Consensus 200 ~~~~a~~~~~~~~~~~~~l~-~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 277 (349)
.-+.+++.-|.++.++..+| .++. .-.--++|.+++++++.+.|. ...+-..++.++...|.+++++..
T Consensus 390 ~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~---------Y~~AV~~~AEL~~~Eg~~~D~i~L 460 (564)
T KOG1174|consen 390 LANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPI---------YTPAVNLIAELCQVEGPTKDIIKL 460 (564)
T ss_pred HHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCc---------cHHHHHHHHHHHHhhCccchHHHH
Confidence 77777777777777777765 3332 222346777777777777777 677777777777777777777777
Q ss_pred HHHHHcccCChHHHHHHHHHHHHHcCCCCCchhHHHHhhhcCCCCCCcccc
Q psy9209 278 AQKCLQHEETAEEAKSLLRSIAQKRQPDESSSQPMECAVVLDPVPPSTRSS 328 (349)
Q Consensus 278 ~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~ 328 (349)
+++.+...|+. ..+..||++....+.+++|+++|..++.++|++......
T Consensus 461 Le~~L~~~~D~-~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl~G 510 (564)
T KOG1174|consen 461 LEKHLIIFPDV-NLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRTLRG 510 (564)
T ss_pred HHHHHhhcccc-HHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHHHHH
Confidence 77777766553 456677777777777777777777777777777665443
No 41
>KOG0548|consensus
Probab=99.93 E-value=7.4e-23 Score=166.97 Aligned_cols=303 Identities=18% Similarity=0.130 Sum_probs=214.6
Q ss_pred hhhHHhhCcHHHHHHHHHHHHHhccccCCCCCcchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhchHHHHHHHHHH
Q psy9209 3 NKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSI 82 (349)
Q Consensus 3 a~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~ 82 (349)
+...+..|+++.|+..|.+++..-|++. ..|.+...+|...|+|++|+.--.+.++++|+-+..+.-.+..
T Consensus 9 gnaa~s~~d~~~ai~~~t~ai~l~p~nh---------vlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa 79 (539)
T KOG0548|consen 9 GNAAFSSGDFETAIRLFTEAIMLSPTNH---------VLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAA 79 (539)
T ss_pred HHhhcccccHHHHHHHHHHHHccCCCcc---------chhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHH
Confidence 4566778889999999988884333221 3566677777777777777777777777777777765554444
Q ss_pred HHhcCCCcchHHHHHHHHHHHhhCcccHHHHHHH----------------------------------------------
Q psy9209 83 AQKRQPDESSSQAVLYFQRALKLNPNYLGVWTLL---------------------------------------------- 116 (349)
Q Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l---------------------------------------------- 116 (349)
... .|++++|+..|.+.++.+|++......+
T Consensus 80 ~~~---lg~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~ 156 (539)
T KOG0548|consen 80 LFG---LGDYEEAILAYSEGLEKDPSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQ 156 (539)
T ss_pred HHh---cccHHHHHHHHHHHhhcCCchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhh
Confidence 333 4777777777777777666644444333
Q ss_pred --------------------------------------------------------------------------HHHHHh
Q psy9209 117 --------------------------------------------------------------------------GHEYME 122 (349)
Q Consensus 117 --------------------------------------------------------------------------a~~~~~ 122 (349)
|.....
T Consensus 157 ~~p~~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaayk 236 (539)
T KOG0548|consen 157 KNPTSLKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYK 236 (539)
T ss_pred cCcHhhhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHH
Confidence 344444
Q ss_pred cCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCh-------HHHHHHHHHHHHhhCHH
Q psy9209 123 MKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDP-------RMLTALGEAFEKQEKIS 195 (349)
Q Consensus 123 ~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~ 195 (349)
..+++.|++.|..+++++ .+...+.+.+.+|...|.+.+++....++++...... .+...+|..+...++++
T Consensus 237 kk~f~~a~q~y~~a~el~-~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~ 315 (539)
T KOG0548|consen 237 KKDFETAIQHYAKALELA-TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYE 315 (539)
T ss_pred hhhHHHHHHHHHHHHhHh-hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHH
Confidence 444555555555555555 4555555555555555555555555555444332211 22334566777788888
Q ss_pred HHHHHHHHHHccccc--------------------------cHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCCC
Q psy9209 196 EAMKCYNKSRAIGDA--------------------------DGKALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPP 249 (349)
Q Consensus 196 ~A~~~~~~a~~~~~~--------------------------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 249 (349)
.|+.+|++++..... -..--..-|..++..|+|..|+..|.+++..+|+
T Consensus 316 ~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~----- 390 (539)
T KOG0548|consen 316 GAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPE----- 390 (539)
T ss_pred HHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCc-----
Confidence 889888888764221 1222344588888999999999999999999998
Q ss_pred CCcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHcccCChHHHHHHHHHHHHHcCCCCCchhHHHHhhhcCCCCCCccc
Q psy9209 250 DKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDESSSQPMECAVVLDPVPPSTRS 327 (349)
Q Consensus 250 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~ 327 (349)
++..|.+.|.+|.+.|.+..|+...+++++++|+...++..-|.++..+.++++|++.|+++++.+|++..+..
T Consensus 391 ----Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~e~~~ 464 (539)
T KOG0548|consen 391 ----DARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNAEAID 464 (539)
T ss_pred ----hhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999998876544
No 42
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.93 E-value=7.3e-23 Score=149.81 Aligned_cols=209 Identities=15% Similarity=0.115 Sum_probs=163.4
Q ss_pred HHHHHHHHHHhcCCCcchHHHHHHHHHHHhhCcccHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCcccHHHHHHHHHHH
Q psy9209 75 AKSLLRSIAQKRQPDESSSQAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTY 154 (349)
Q Consensus 75 ~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~ 154 (349)
+......++..|...|++..|...++++++.+|++..+|..++.+|...|+.+.|.+.|++++.++|++.+++.+.|..+
T Consensus 34 aa~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FL 113 (250)
T COG3063 34 AAKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFL 113 (250)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHH
Confidence 33445556667777788888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHhCCHHHHHHHHHHHHhc--CCCChHHHHHHHHHHHHhhCHHHHHHHHHHHHccccccHHHHHHHHHHHHhcCcHHHHH
Q psy9209 155 EILRLPYYGLYYYKQAHMV--RPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKLAKLYDKLNETEAAA 232 (349)
Q Consensus 155 ~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 232 (349)
+.+|++++|...|++++.. .+..+.++-++|.|..+.|+++.|..+|+++++.+|+.+.....++..++..|++..|.
T Consensus 114 C~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar 193 (250)
T COG3063 114 CAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPAR 193 (250)
T ss_pred HhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHH
Confidence 8888888888888888764 44556778888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHhcccccCCCCCCcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHcccCChHHHH
Q psy9209 233 DLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAK 292 (349)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 292 (349)
.++++.....+. ....+.....+-...|+-+.|.++=.+.....|...+..
T Consensus 194 ~~~~~~~~~~~~---------~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~e~q 244 (250)
T COG3063 194 LYLERYQQRGGA---------QAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSEEYQ 244 (250)
T ss_pred HHHHHHHhcccc---------cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHH
Confidence 888777766554 577777777777778888888777777777777765543
No 43
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.93 E-value=3.2e-23 Score=168.20 Aligned_cols=227 Identities=11% Similarity=-0.032 Sum_probs=183.9
Q ss_pred CCCcchHHHHHHHHHHHhhCc---c-cHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHHH
Q psy9209 87 QPDESSSQAVLYFQRALKLNP---N-YLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYY 162 (349)
Q Consensus 87 ~~~~~~~~A~~~~~~~~~~~~---~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~ 162 (349)
...+..+.++..+.+++...| . .+..++.+|.++...|++++|+..|+++++++|+++.+|..+|.++...|++++
T Consensus 37 ~~~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~ 116 (296)
T PRK11189 37 QPTLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDA 116 (296)
T ss_pred CCchHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHH
Confidence 334677889999999996433 3 367899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCChHHHHHHHHHHHHhhCHHHHHHHHHHHHccccccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc
Q psy9209 163 GLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKLAKLYDKLNETEAAADLFMEFVSKL 242 (349)
Q Consensus 163 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 242 (349)
|+..|+++++++|++..++.++|.++...|++++|+..++++++.+|+++..... ..+....+++++|+..+.+.....
T Consensus 117 A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~-~~l~~~~~~~~~A~~~l~~~~~~~ 195 (296)
T PRK11189 117 AYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPYRALW-LYLAESKLDPKQAKENLKQRYEKL 195 (296)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHH-HHHHHccCCHHHHHHHHHHHHhhC
Confidence 9999999999999999999999999999999999999999999999988742222 223456788999999998876543
Q ss_pred cccCCCCCCcchHHHHHHHHHHHHHhCCHHHH--HHHHHHH----HcccCChHHHHHHHHHHHHHcCCCCCchhHHHHhh
Q psy9209 243 DTFAAPPDKTCGFFAFKYLANHHLKANNLDTA--YKCAQKC----LQHEETAEEAKSLLRSIAQKRQPDESSSQPMECAV 316 (349)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A--~~~~~~a----~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 316 (349)
+. .. |. .+.+....|+..++ +..+.+. .++.|...+++..+|.++...|++++|+.+|++++
T Consensus 196 ~~---------~~--~~-~~~~~~~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al 263 (296)
T PRK11189 196 DK---------EQ--WG-WNIVEFYLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLAL 263 (296)
T ss_pred Cc---------cc--cH-HHHHHHHccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 32 11 11 34555556665443 3223222 34566778999999999999999999999999999
Q ss_pred hcCC-CCCCcc
Q psy9209 317 VLDP-VPPSTR 326 (349)
Q Consensus 317 ~~~p-~~~~~~ 326 (349)
+.+| +....+
T Consensus 264 ~~~~~~~~e~~ 274 (296)
T PRK11189 264 ANNVYNFVEHR 274 (296)
T ss_pred HhCCchHHHHH
Confidence 9997 444433
No 44
>KOG2003|consensus
Probab=99.92 E-value=5.7e-23 Score=164.71 Aligned_cols=275 Identities=16% Similarity=0.134 Sum_probs=239.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhhhhchHHH-HHHHHHHHHhcCCCcchHHHHHHHHHHHhhCcccHHHHHHHHHHH
Q psy9209 42 FKYLANHHLKANNLDTAYKCAQKCLQHEETAEEA-KSLLRSIAQKRQPDESSSQAVLYFQRALKLNPNYLGVWTLLGHEY 120 (349)
Q Consensus 42 ~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~-~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 120 (349)
-...+-.+++.|+++.|+++++-.-..+.....+ ...+..+ ..+.--.++..|..+...++.++.-++.+..+.|.+-
T Consensus 422 ei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l-~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~ 500 (840)
T KOG2003|consen 422 EINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCAL-RFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIA 500 (840)
T ss_pred hhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHH-HHHhcccchhHHHHHHHHHhcccccCHHHhhcCCcee
Confidence 3456677889999999999887655444332222 1222222 1222245889999999999999999999999999999
Q ss_pred HhcCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhCHHHHHHH
Q psy9209 121 MEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKC 200 (349)
Q Consensus 121 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 200 (349)
+..|++++|.+.|++++..+.....+++++|..+..+|+.++|+.+|-+.-.+--++..+++.++.+|..+.+..+|+++
T Consensus 501 f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~ 580 (840)
T KOG2003|consen 501 FANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIEL 580 (840)
T ss_pred eecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHH
Confidence 99999999999999999999889999999999999999999999999998888888999999999999999999999999
Q ss_pred HHHHHccccccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCCCCCcchHHHHHHHHHHHHHhCCHHHHHHHHHH
Q psy9209 201 YNKSRAIGDADGKALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQK 280 (349)
Q Consensus 201 ~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 280 (349)
+.++..+-|++|.++..+|.+|-+.|+-.+|..++-......|. +.+..-.||..|....-+++|+.+|++
T Consensus 581 ~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~---------nie~iewl~ayyidtqf~ekai~y~ek 651 (840)
T KOG2003|consen 581 LMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPC---------NIETIEWLAAYYIDTQFSEKAINYFEK 651 (840)
T ss_pred HHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCc---------chHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999888888888 788889999999999999999999999
Q ss_pred HHcccCChHHHHHHHHHHHHHcCCCCCchhHHHHhhhcCCCCCCcc
Q psy9209 281 CLQHEETAEEAKSLLRSIAQKRQPDESSSQPMECAVVLDPVPPSTR 326 (349)
Q Consensus 281 a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~ 326 (349)
+--+.|+.......++.|+.+.|++..|.+.|+..-...|++.+.+
T Consensus 652 aaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldcl 697 (840)
T KOG2003|consen 652 AALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCL 697 (840)
T ss_pred HHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHH
Confidence 9999999999889999999999999999999999999999887643
No 45
>KOG1174|consensus
Probab=99.92 E-value=2.4e-22 Score=158.83 Aligned_cols=281 Identities=15% Similarity=0.106 Sum_probs=245.9
Q ss_pred hhhHHhhCcHHHHHHHHHHHHHhccccCCCCCcchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhchHHHHHHHHHH
Q psy9209 3 NKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSI 82 (349)
Q Consensus 3 a~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~ 82 (349)
|+++...|++.+|+..|+++. ..+|.... ..-..|..+...|+++.-...-...+.........|..-+..
T Consensus 239 ak~~~~~Gdn~~a~~~Fe~~~------~~dpy~i~---~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~ 309 (564)
T KOG1174|consen 239 GKCLYYNGDYFQAEDIFSSTL------CANPDNVE---AMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHAQL 309 (564)
T ss_pred hhhhhhhcCchHHHHHHHHHh------hCChhhhh---hHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhhhhh
Confidence 788999999999999999988 45565444 344557777889999988888888887765555555544433
Q ss_pred HHhcCCCcchHHHHHHHHHHHhhCcccHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHHH
Q psy9209 83 AQKRQPDESSSQAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYY 162 (349)
Q Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~ 162 (349)
.+..+++..|+.+-+++++.+|++..++...|.++...|+.++|+-.|+.+..+.|...+.|.+|..+|...|++.+
T Consensus 310 ---l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kE 386 (564)
T KOG1174|consen 310 ---LYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKE 386 (564)
T ss_pred ---hhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHH
Confidence 34468999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCChHHHHHHH-HHHH-HhhCHHHHHHHHHHHHccccccHHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Q psy9209 163 GLYYYKQAHMVRPNDPRMLTALG-EAFE-KQEKISEAMKCYNKSRAIGDADGKALFKLAKLYDKLNETEAAADLFMEFVS 240 (349)
Q Consensus 163 A~~~~~~~~~~~~~~~~~~~~l~-~~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 240 (349)
|...-+.+++..|.++.++..+| .++. .-.--++|..++++++.+.|....+-..++.++...|.++.++..+++.+.
T Consensus 387 A~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~ 466 (564)
T KOG1174|consen 387 ANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLI 466 (564)
T ss_pred HHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHh
Confidence 99999999999999999999886 4443 334458899999999999999999999999999999999999999999999
Q ss_pred cccccCCCCCCcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHcccCChHHHHHHHHHHHHHcCCC
Q psy9209 241 KLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPD 305 (349)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~ 305 (349)
..|+ ...+..||.++...+.+++|+.+|..++.++|++..+...+-.+.....+.
T Consensus 467 ~~~D----------~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl~Gl~~lEK~~~~~ 521 (564)
T KOG1174|consen 467 IFPD----------VNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRTLRGLRLLEKSDDES 521 (564)
T ss_pred hccc----------cHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHHHHHHHHHHhccCCC
Confidence 9886 788999999999999999999999999999999999888887766554433
No 46
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.92 E-value=5.7e-22 Score=178.18 Aligned_cols=146 Identities=12% Similarity=0.032 Sum_probs=108.2
Q ss_pred HHHHHHHHHhhCHHHHHHHHHHHHcccc------ccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccc-c-----CCCC
Q psy9209 182 TALGEAFEKQEKISEAMKCYNKSRAIGD------ADGKALFKLAKLYDKLNETEAAADLFMEFVSKLDT-F-----AAPP 249 (349)
Q Consensus 182 ~~l~~~~~~~~~~~~A~~~~~~a~~~~~------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~-----~~~~ 249 (349)
...|..|...+++++|+.+|++++...| ........|...+...+++++|..++++.....|. . ....
T Consensus 331 ~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~ 410 (822)
T PRK14574 331 RWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKE 410 (822)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCC
Confidence 3455666666777777777777766442 12223456677777888888888888888775551 0 0123
Q ss_pred CCcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHcccCChHHHHHHHHHHHHHcCCCCCchhHHHHhhhcCCCCCCccc
Q psy9209 250 DKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDESSSQPMECAVVLDPVPPSTRS 327 (349)
Q Consensus 250 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~ 327 (349)
..+........++.++...|+..+|.+.+++.+...|.+...+..++.++...|.+.+|...++.+..++|++..+..
T Consensus 411 pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~ 488 (822)
T PRK14574 411 PNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILER 488 (822)
T ss_pred CCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHH
Confidence 455567788888888999999999999999999999999999999999999999999999999888888888776544
No 47
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.92 E-value=1.2e-22 Score=161.05 Aligned_cols=201 Identities=16% Similarity=0.091 Sum_probs=148.5
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Q psy9209 110 LGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFE 189 (349)
Q Consensus 110 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 189 (349)
+..+..+|.++...|++++|+..++++++.+|.+..++..+|.++...|++++|+..++++++..|.+..++..+|.++.
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 110 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLC 110 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Confidence 55667777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HhhCHHHHHHHHHHHHccc--cccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCCCCCcchHHHHHHHHHHHHH
Q psy9209 190 KQEKISEAMKCYNKSRAIG--DADGKALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLK 267 (349)
Q Consensus 190 ~~~~~~~A~~~~~~a~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 267 (349)
..|++++|+..+++++... +.....+..+|.++...|++++|...+.+++...|. ....+..+|.++..
T Consensus 111 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---------~~~~~~~la~~~~~ 181 (234)
T TIGR02521 111 QQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQ---------RPESLLELAELYYL 181 (234)
T ss_pred HcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC---------ChHHHHHHHHHHHH
Confidence 7777777777777777642 345566777777777777777777777777777766 56677777777777
Q ss_pred hCCHHHHHHHHHHHHcccCChHHHHHHHHHHHHHcCCCCCchhHHHHhhhcC
Q psy9209 268 ANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDESSSQPMECAVVLD 319 (349)
Q Consensus 268 ~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 319 (349)
.|++++|..++++++...|.++..+..++.++...|+.++|..+.+.+....
T Consensus 182 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 233 (234)
T TIGR02521 182 RGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKLF 233 (234)
T ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhC
Confidence 7777777777777777766667777777777777777777777766655543
No 48
>KOG0624|consensus
Probab=99.92 E-value=4.3e-22 Score=153.99 Aligned_cols=279 Identities=15% Similarity=0.105 Sum_probs=240.5
Q ss_pred hhhhHHhhCcHHHHHHHHHHHHHhccccCCCCCcchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhchHHH------
Q psy9209 2 RNKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEA------ 75 (349)
Q Consensus 2 ~a~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~------ 75 (349)
||.+|...|+...|+..+.++++.-|... -+....|.+++++|.+++|..-|..++..+|.+...
T Consensus 78 RaT~yLAmGksk~al~Dl~rVlelKpDF~---------~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqsk 148 (504)
T KOG0624|consen 78 RATVYLAMGKSKAALQDLSRVLELKPDFM---------AARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSK 148 (504)
T ss_pred HHHHHhhhcCCccchhhHHHHHhcCccHH---------HHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHH
Confidence 68899999999999999999994333222 468889999999999999999999999998854322
Q ss_pred ------HHHHHHHHHhcCCCcchHHHHHHHHHHHhhCcccHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCcccHHHHHH
Q psy9209 76 ------KSLLRSIAQKRQPDESSSQAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYG 149 (349)
Q Consensus 76 ------~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~ 149 (349)
...+......+...|+...|+......+++.|-+...+...+.+|...|++..|+..++.+-++..++.+.++.
T Consensus 149 l~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~yk 228 (504)
T KOG0624|consen 149 LALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYK 228 (504)
T ss_pred HHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHH
Confidence 12233334456668999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHH------------HHHHHHHhhCHHHHHHHHHHHHccccccHHH---
Q psy9209 150 LGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTA------------LGEAFEKQEKISEAMKCYNKSRAIGDADGKA--- 214 (349)
Q Consensus 150 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~------------l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~--- 214 (349)
++.+++..|+.+.++...+++++++|+....+-. -+.-....++|.++++..+++++.+|..+.+
T Consensus 229 is~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~ 308 (504)
T KOG0624|consen 229 ISQLLYTVGDAENSLKEIRECLKLDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYN 308 (504)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHccCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeee
Confidence 9999999999999999999999999998654322 2344556789999999999999999985543
Q ss_pred -HHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCCCCCcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHcccCChHHHHH
Q psy9209 215 -LFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKS 293 (349)
Q Consensus 215 -~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 293 (349)
...+..|+..-|++.+|+....+++.++|+ +..++...+..|.....|+.|+.-|+++.+.++++..+..
T Consensus 309 ~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~---------dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~re 379 (504)
T KOG0624|consen 309 GFRVLCTCYREDEQFGEAIQQCKEVLDIDPD---------DVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRARE 379 (504)
T ss_pred eeheeeecccccCCHHHHHHHHHHHHhcCch---------HHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHHHH
Confidence 345677888999999999999999999998 8999999999999999999999999999999999988776
Q ss_pred HHHHH
Q psy9209 294 LLRSI 298 (349)
Q Consensus 294 ~l~~~ 298 (349)
.+-..
T Consensus 380 Gle~A 384 (504)
T KOG0624|consen 380 GLERA 384 (504)
T ss_pred HHHHH
Confidence 66544
No 49
>KOG1125|consensus
Probab=99.92 E-value=2.1e-23 Score=171.53 Aligned_cols=255 Identities=15% Similarity=0.109 Sum_probs=215.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhhhhchHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhCcccHHHHHHHHHHHHh
Q psy9209 43 KYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDESSSQAVLYFQRALKLNPNYLGVWTLLGHEYME 122 (349)
Q Consensus 43 ~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~ 122 (349)
+..|..+++.|+..+|.-.|+.++..+|.+.++|..||.. ....++-..|+..++++++++|++..++..||..|..
T Consensus 289 f~eG~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~---qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytN 365 (579)
T KOG1125|consen 289 FKEGCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGIT---QAENENEQNAISALRRCLELDPTNLEALMALAVSYTN 365 (579)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhH---hhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhh
Confidence 5789999999999999999999999999999998877754 5556888999999999999999999999999999999
Q ss_pred cCChHHHHHHHHHHHHhCcccHHHHHH-------HHHHHHHhCCHHHHHHHHHHHHhcCC--CChHHHHHHHHHHHHhhC
Q psy9209 123 MKNTNAAIQCYRQAIEINNLDYRAWYG-------LGQTYEILRLPYYGLYYYKQAHMVRP--NDPRMLTALGEAFEKQEK 193 (349)
Q Consensus 123 ~~~~~~A~~~~~~a~~~~~~~~~~~~~-------l~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~ 193 (349)
.|.-.+|++++.+-+...|........ ..........+..-.+.|..+....| .++++...||.+|...|+
T Consensus 366 eg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~e 445 (579)
T KOG1125|consen 366 EGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGE 445 (579)
T ss_pred hhhHHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchH
Confidence 999999999999999877653211100 00001111123344566777777777 789999999999999999
Q ss_pred HHHHHHHHHHHHccccccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCCCCCcchHHHHHHHHHHHHHhCCHHH
Q psy9209 194 ISEAMKCYNKSRAIGDADGKALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDT 273 (349)
Q Consensus 194 ~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 273 (349)
|++|+.+|+.++...|++...|..||-.+....+.++|+..|++++++.|. ...++++||..++..|.|++
T Consensus 446 fdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~---------yVR~RyNlgIS~mNlG~ykE 516 (579)
T KOG1125|consen 446 FDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPG---------YVRVRYNLGISCMNLGAYKE 516 (579)
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCC---------eeeeehhhhhhhhhhhhHHH
Confidence 999999999999999999999999999999999999999999999999999 89999999999999999999
Q ss_pred HHHHHHHHHcccCC----------hHHHHHHHHHHHHHcCCCCCch
Q psy9209 274 AYKCAQKCLQHEET----------AEEAKSLLRSIAQKRQPDESSS 309 (349)
Q Consensus 274 A~~~~~~a~~~~~~----------~~~~~~~l~~~~~~~~~~~~A~ 309 (349)
|.++|-.++.+.+. +..+|..|..+....++.+.+.
T Consensus 517 A~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~ 562 (579)
T KOG1125|consen 517 AVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQ 562 (579)
T ss_pred HHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHH
Confidence 99999999987543 2467888887777777776443
No 50
>KOG2003|consensus
Probab=99.92 E-value=4.2e-22 Score=159.77 Aligned_cols=284 Identities=17% Similarity=0.163 Sum_probs=245.3
Q ss_pred hhhhHHhhCcHHHHHHHHHHHHHhccccCCCCCcchhHHHHHHHHHHHHhc--CCHHHHHHHHHHHhhhhhchHHHHHHH
Q psy9209 2 RNKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKA--NNLDTAYKCAQKCLQHEETAEEAKSLL 79 (349)
Q Consensus 2 ~a~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~A~~~~~~~l~~~~~~~~~~~~l 79 (349)
+|--|+++|+++.|++++.- ++.-+ +.....+-.++...++.+ .++..|..+...++..+.-++.+...-
T Consensus 425 ka~~~lk~~d~~~aieilkv-~~~kd-------nk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nk 496 (840)
T KOG2003|consen 425 KAGELLKNGDIEGAIEILKV-FEKKD-------NKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNK 496 (840)
T ss_pred HHHHHHhccCHHHHHHHHHH-HHhcc-------chhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcC
Confidence 35568899999999998743 32211 111113445555555554 368899999999998887777774444
Q ss_pred HHHHHhcCCCcchHHHHHHHHHHHhhCcccHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCC
Q psy9209 80 RSIAQKRQPDESSSQAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRL 159 (349)
Q Consensus 80 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~ 159 (349)
++ .-+..|++++|.+.|++++..+....++++++|..+..+|+.++|+.+|-+.-.+--++..+++.++.+|..+.+
T Consensus 497 gn---~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led 573 (840)
T KOG2003|consen 497 GN---IAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLED 573 (840)
T ss_pred Cc---eeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhC
Confidence 44 445579999999999999999999999999999999999999999999999988888899999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhCHHHHHHHHHHHHccccccHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Q psy9209 160 PYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKLAKLYDKLNETEAAADLFMEFV 239 (349)
Q Consensus 160 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 239 (349)
..+|++++.++..+-|++|.++..+|.+|-+.|+-.+|..++-......|.+.+..-.+|..|....-+++|+.+|+++-
T Consensus 574 ~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaa 653 (840)
T KOG2003|consen 574 PAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAA 653 (840)
T ss_pred HHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccccCCCCCCcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHcccCChHHHHHHHHHHHHHcCCC
Q psy9209 240 SKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPD 305 (349)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~ 305 (349)
-+.|+ .......++.|+.+.|+|.+|...|+..-...|.+.+.+..|.++.-.+|-.
T Consensus 654 liqp~---------~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl~ 710 (840)
T KOG2003|consen 654 LIQPN---------QSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGLK 710 (840)
T ss_pred hcCcc---------HHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccch
Confidence 99998 6777778899999999999999999999999999999888888877766643
No 51
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.92 E-value=1.3e-21 Score=175.85 Aligned_cols=273 Identities=12% Similarity=-0.009 Sum_probs=207.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhhhhchHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhCcccHHHHHHHHHHHH
Q psy9209 42 FKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDESSSQAVLYFQRALKLNPNYLGVWTLLGHEYM 121 (349)
Q Consensus 42 ~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 121 (349)
+..+|.++...|++++|++.|+++++.+|+++.++. .++..+...++.++|++.++++...+|..... ..++.++.
T Consensus 105 llalA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~---gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~-l~layL~~ 180 (822)
T PRK14574 105 LASAARAYRNEKRWDQALALWQSSLKKDPTNPDLIS---GMIMTQADAGRGGVVLKQATELAERDPTVQNY-MTLSYLNR 180 (822)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHH---HHHHHHhhcCCHHHHHHHHHHhcccCcchHHH-HHHHHHHH
Confidence 334466777777777777777777777777766643 23444555577777777777777766664333 44444554
Q ss_pred hcCChHHHHHHHHHHHHhCcccHHHHHH----------------------------------------------------
Q psy9209 122 EMKNTNAAIQCYRQAIEINNLDYRAWYG---------------------------------------------------- 149 (349)
Q Consensus 122 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~---------------------------------------------------- 149 (349)
..++..+|++.++++++.+|++..++..
T Consensus 181 ~~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~ 260 (822)
T PRK14574 181 ATDRNYDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSE 260 (822)
T ss_pred hcchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccc
Confidence 4556655777777776666543332222
Q ss_pred ------------------------------------------------------------------------HHHHHHHh
Q psy9209 150 ------------------------------------------------------------------------LGQTYEIL 157 (349)
Q Consensus 150 ------------------------------------------------------------------------l~~~~~~~ 157 (349)
.|..|...
T Consensus 261 ~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~ 340 (822)
T PRK14574 261 TERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDR 340 (822)
T ss_pred hhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhc
Confidence 24444466
Q ss_pred CCHHHHHHHHHHHHhcCC------CChHHHHHHHHHHHHhhCHHHHHHHHHHHHcccc---------------ccHHHHH
Q psy9209 158 RLPYYGLYYYKQAHMVRP------NDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGD---------------ADGKALF 216 (349)
Q Consensus 158 ~~~~~A~~~~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~---------------~~~~~~~ 216 (349)
+++++|+.+|..++...| .+......|...+...+++++|..++++..+..| +......
T Consensus 341 ~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~ 420 (822)
T PRK14574 341 RLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQT 420 (822)
T ss_pred CCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHH
Confidence 666777777777766442 1223346778889999999999999999988544 3356778
Q ss_pred HHHHHHHhcCcHHHHHHHHHHHHhcccccCCCCCCcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHcccCChHHHHHHHH
Q psy9209 217 KLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLR 296 (349)
Q Consensus 217 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~ 296 (349)
.++.++...|++.+|++.+++.+...|. +..+...+|.++...|.+.+|...++.+..++|.+..+...++
T Consensus 421 l~a~~~~~~gdl~~Ae~~le~l~~~aP~---------n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~ 491 (822)
T PRK14574 421 LLVQSLVALNDLPTAQKKLEDLSSTAPA---------NQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQA 491 (822)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCC---------CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHH
Confidence 8899999999999999999999999999 8999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCCCchhHHHHhhhcCCCCCCccc
Q psy9209 297 SIAQKRQPDESSSQPMECAVVLDPVPPSTRS 327 (349)
Q Consensus 297 ~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~ 327 (349)
.++..+|++.+|....+.+++..|+++.+..
T Consensus 492 ~~al~l~e~~~A~~~~~~l~~~~Pe~~~~~~ 522 (822)
T PRK14574 492 ETAMALQEWHQMELLTDDVISRSPEDIPSQE 522 (822)
T ss_pred HHHHhhhhHHHHHHHHHHHHhhCCCchhHHH
Confidence 9999999999999999999999999987543
No 52
>KOG0495|consensus
Probab=99.92 E-value=1e-21 Score=163.75 Aligned_cols=306 Identities=17% Similarity=0.095 Sum_probs=274.0
Q ss_pred hhhHHhhCcHHHHHHHHHHHHHhccccCCCCCcchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhchHHHHHHHHHH
Q psy9209 3 NKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSI 82 (349)
Q Consensus 3 a~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~ 82 (349)
|+.+.+.+-++-|+.+|..+++..+... ..|...+..--..|..++-..++++++...|..+..|..+..-
T Consensus 523 a~~~~k~~~~~carAVya~alqvfp~k~---------slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake 593 (913)
T KOG0495|consen 523 AQSCEKRPAIECARAVYAHALQVFPCKK---------SLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKE 593 (913)
T ss_pred HHHHHhcchHHHHHHHHHHHHhhccchh---------HHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHH
Confidence 4566778888999999999996665544 5788888777888999999999999999999887776655544
Q ss_pred HHhcCCCcchHHHHHHHHHHHhhCcccHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHHH
Q psy9209 83 AQKRQPDESSSQAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYY 162 (349)
Q Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~ 162 (349)
+...|+...|...+.++++.+|++.+.|+.-..+.....+++.|..+|.++....| ...+|+.-+.+...+++.++
T Consensus 594 ---~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~sg-TeRv~mKs~~~er~ld~~ee 669 (913)
T KOG0495|consen 594 ---KWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSISG-TERVWMKSANLERYLDNVEE 669 (913)
T ss_pred ---HHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCC-cchhhHHHhHHHHHhhhHHH
Confidence 33459999999999999999999999999999999999999999999999998766 57889999999999999999
Q ss_pred HHHHHHHHHhcCCCChHHHHHHHHHHHHhhCHHHHHHHHHHHHccccccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc
Q psy9209 163 GLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKLAKLYDKLNETEAAADLFMEFVSKL 242 (349)
Q Consensus 163 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 242 (349)
|+.+++++++..|+....|..+|+++.++++.+.|...|...++..|..+..|..++.+-.+.|+...|...++++.-.+
T Consensus 670 A~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN 749 (913)
T KOG0495|consen 670 ALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN 749 (913)
T ss_pred HHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHcccCCh------------------------------HHHH
Q psy9209 243 DTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETA------------------------------EEAK 292 (349)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~------------------------------~~~~ 292 (349)
|. +...|.....+-.+.|+.+.|.....++++-.|++ +.+.
T Consensus 750 Pk---------~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVl 820 (913)
T KOG0495|consen 750 PK---------NALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVL 820 (913)
T ss_pred CC---------cchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhH
Confidence 99 89999999999999999999999999998876654 5556
Q ss_pred HHHHHHHHHcCCCCCchhHHHHhhhcCCCCCCccccCC
Q psy9209 293 SLLRSIAQKRQPDESSSQPMECAVVLDPVPPSTRSSKF 330 (349)
Q Consensus 293 ~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~ 330 (349)
..++.++....+++.|.++|.++++.+|++.++|..++
T Consensus 821 laia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fy 858 (913)
T KOG0495|consen 821 LAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFY 858 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHH
Confidence 66778888888899999999999999999999887654
No 53
>KOG0548|consensus
Probab=99.92 E-value=1.5e-21 Score=159.44 Aligned_cols=294 Identities=17% Similarity=0.153 Sum_probs=244.4
Q ss_pred hhhhHHhhCcHHHHHHHHHHHHHhccccCCCCCcchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhchHHHHHHHHH
Q psy9209 2 RNKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRS 81 (349)
Q Consensus 2 ~a~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~ 81 (349)
|+-.|...|+|++|+..-.+.++..|.-. ..|..+|..+.-.|+|++|+..|.+.|+.+|++......+..
T Consensus 42 rsaa~a~~~~~~~al~da~k~~~l~p~w~---------kgy~r~Gaa~~~lg~~~eA~~ay~~GL~~d~~n~~L~~gl~~ 112 (539)
T KOG0548|consen 42 RSAAYASLGSYEKALKDATKTRRLNPDWA---------KGYSRKGAALFGLGDYEEAILAYSEGLEKDPSNKQLKTGLAQ 112 (539)
T ss_pred hHHHHHHHhhHHHHHHHHHHHHhcCCchh---------hHHHHhHHHHHhcccHHHHHHHHHHHhhcCCchHHHHHhHHH
Confidence 45678899999999998888884333222 569999999999999999999999999998887554322211
Q ss_pred --------------------------------------------------------------------------------
Q psy9209 82 -------------------------------------------------------------------------------- 81 (349)
Q Consensus 82 -------------------------------------------------------------------------------- 81 (349)
T Consensus 113 a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~ 192 (539)
T KOG0548|consen 113 AYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYLNDPRLMKADGQLKGVDELLFYASGIE 192 (539)
T ss_pred hhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcccccHHHHHHHHHHhcCccccccccccc
Confidence
Q ss_pred -------------------------------------HHHhcCCCcchHHHHHHHHHHHhhCcccHHHHHHHHHHHHhcC
Q psy9209 82 -------------------------------------IAQKRQPDESSSQAVLYFQRALKLNPNYLGVWTLLGHEYMEMK 124 (349)
Q Consensus 82 -------------------------------------~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~ 124 (349)
++...++..++..|++.|..++.++ .+...+.+.+.+|...|
T Consensus 193 ~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~el~-~~it~~~n~aA~~~e~~ 271 (539)
T KOG0548|consen 193 ILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHYAKALELA-TDITYLNNIAAVYLERG 271 (539)
T ss_pred cCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHhHh-hhhHHHHHHHHHHHhcc
Confidence 1122223557888999999999999 77888899999999999
Q ss_pred ChHHHHHHHHHHHHhCccc-------HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-----------------------
Q psy9209 125 NTNAAIQCYRQAIEINNLD-------YRAWYGLGQTYEILRLPYYGLYYYKQAHMVR----------------------- 174 (349)
Q Consensus 125 ~~~~A~~~~~~a~~~~~~~-------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~----------------------- 174 (349)
.+.+.+....++++..... ..+...+|..|...++++.|+.+|.+++...
T Consensus 272 ~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a 351 (539)
T KOG0548|consen 272 KYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKA 351 (539)
T ss_pred HHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999988865433 2334456778888899999999999988753
Q ss_pred ---CCChHHHHHHHHHHHHhhCHHHHHHHHHHHHccccccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCCCCC
Q psy9209 175 ---PNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDK 251 (349)
Q Consensus 175 ---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 251 (349)
|.-..--...|..++..|+|..|+..|.+++..+|+++..|.+.|.||.++|.+..|+...+.+++++|+
T Consensus 352 ~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~------- 424 (539)
T KOG0548|consen 352 YINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPN------- 424 (539)
T ss_pred hhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCch-------
Confidence 2222334556899999999999999999999999999999999999999999999999999999999999
Q ss_pred cchHHHHHHHHHHHHHhCCHHHHHHHHHHHHcccCChHHHHHHHHHHHHHcCCCCCchhHHHH
Q psy9209 252 TCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDESSSQPMEC 314 (349)
Q Consensus 252 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 314 (349)
....|..-|.++..+.+|++|++.|+++++.+|++.++...+..|...+.......+..++
T Consensus 425 --~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~e~~~~~~rc~~a~~~~~~~ee~~~r 485 (539)
T KOG0548|consen 425 --FIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNAEAIDGYRRCVEAQRGDETPEETKRR 485 (539)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHhhcCCCHHHHHHh
Confidence 8999999999999999999999999999999999999999999999876555666666666
No 54
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.91 E-value=6e-22 Score=157.04 Aligned_cols=196 Identities=15% Similarity=0.116 Sum_probs=134.2
Q ss_pred HHHHHhcCCCcchHHHHHHHHHHHhhCcccHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCC
Q psy9209 80 RSIAQKRQPDESSSQAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRL 159 (349)
Q Consensus 80 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~ 159 (349)
..++..+...|++++|+..++++++.+|++..++..+|.++...|++++|+..++++++..|.+..++..+|.++...|+
T Consensus 35 ~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~ 114 (234)
T TIGR02521 35 VQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGK 114 (234)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccc
Confidence 33444455556666666666666666666666667777777777777777777777777777666677777777777777
Q ss_pred HHHHHHHHHHHHhcC--CCChHHHHHHHHHHHHhhCHHHHHHHHHHHHccccccHHHHHHHHHHHHhcCcHHHHHHHHHH
Q psy9209 160 PYYGLYYYKQAHMVR--PNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKLAKLYDKLNETEAAADLFME 237 (349)
Q Consensus 160 ~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 237 (349)
+++|+..+++++... +.....+..+|.++...|++++|...+++++...|.++..+..+|.++...|++++|...+++
T Consensus 115 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 194 (234)
T TIGR02521 115 YEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDARAYLER 194 (234)
T ss_pred HHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 777777777776642 344556666777777777777777777777777777777777777777777777777777777
Q ss_pred HHhcccccCCCCCCcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHcc
Q psy9209 238 FVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQH 284 (349)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 284 (349)
++...|. .+..+..++.++...|+.++|..+.+.+...
T Consensus 195 ~~~~~~~---------~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 195 YQQTYNQ---------TAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHhCCC---------CHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 7766554 4566666777777777777777766665443
No 55
>KOG4162|consensus
Probab=99.91 E-value=2.1e-21 Score=164.66 Aligned_cols=311 Identities=15% Similarity=0.109 Sum_probs=251.3
Q ss_pred hHHhhCcHHHHHHHHHHHHHhccccCCCCCcchhHHHHHHHHHHHHhc-----------CCHHHHHHHHHHHhhhhhchH
Q psy9209 5 LYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKA-----------NNLDTAYKCAQKCLQHEETAE 73 (349)
Q Consensus 5 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----------~~~~~A~~~~~~~l~~~~~~~ 73 (349)
++.+.|.+++++.+.++++....... .......+..+|.+|..+ ....+++..++++++.+|+++
T Consensus 403 c~e~l~~~eegldYA~kai~~~~~~~----~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp 478 (799)
T KOG4162|consen 403 CIERLKLVEEGLDYAQKAISLLGGQR----SHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDP 478 (799)
T ss_pred HHhchhhhhhHHHHHHHHHHHhhhhh----hhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCc
Confidence 34567899999999999996442111 111125678888887543 235678999999999999999
Q ss_pred HHHHHHHHHHHhcCCCcchHHHHHHHHHHHhh-CcccHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCcccHHHHHHHHH
Q psy9209 74 EAKSLLRSIAQKRQPDESSSQAVLYFQRALKL-NPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQ 152 (349)
Q Consensus 74 ~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~ 152 (349)
.+.+. ++..|...++.+.|+...+++++. ..+++.+|..++.++...+++.+|+.+...+++-.|+|.........
T Consensus 479 ~~if~---lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~ 555 (799)
T KOG4162|consen 479 LVIFY---LALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIH 555 (799)
T ss_pred hHHHH---HHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhh
Confidence 87444 444455568999999999999999 55678999999999999999999999999999988876544444444
Q ss_pred HHHHhCCHHHHHHHHHHHHhc-----------------------------------------------------------
Q psy9209 153 TYEILRLPYYGLYYYKQAHMV----------------------------------------------------------- 173 (349)
Q Consensus 153 ~~~~~~~~~~A~~~~~~~~~~----------------------------------------------------------- 173 (349)
+-...++.++|+..+...+..
T Consensus 556 i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~ 635 (799)
T KOG4162|consen 556 IELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPS 635 (799)
T ss_pred hhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCc
Confidence 444455555554443333222
Q ss_pred -----CCCC-----hHHHHHHHHHHHHhhCHHHHHHHHHHHHccccccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhccc
Q psy9209 174 -----RPND-----PRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKLAKLYDKLNETEAAADLFMEFVSKLD 243 (349)
Q Consensus 174 -----~~~~-----~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 243 (349)
.|+. ...|...+..+...+..++|..++.++-.+.|..+..|+..|.++...|++.+|...|..++.++|
T Consensus 636 s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP 715 (799)
T KOG4162|consen 636 STVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDP 715 (799)
T ss_pred ccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCC
Confidence 0111 135667888899999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCcchHHHHHHHHHHHHHhCCHHHHHH--HHHHHHcccCChHHHHHHHHHHHHHcCCCCCchhHHHHhhhcCCC
Q psy9209 244 TFAAPPDKTCGFFAFKYLANHHLKANNLDTAYK--CAQKCLQHEETAEEAKSLLRSIAQKRQPDESSSQPMECAVVLDPV 321 (349)
Q Consensus 244 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~--~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~ 321 (349)
+ ++.+...+|.++.+.|+..-|.. .+..+++++|.++++|+.+|.+...+|+.+.|.++|..++++++.
T Consensus 716 ~---------hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S 786 (799)
T KOG4162|consen 716 D---------HVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEES 786 (799)
T ss_pred C---------CcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccC
Confidence 9 89999999999999998888888 999999999999999999999999999999999999999999999
Q ss_pred CCCccccCCC
Q psy9209 322 PPSTRSSKFP 331 (349)
Q Consensus 322 ~~~~~~~~~~ 331 (349)
+|......+|
T Consensus 787 ~PV~pFs~ip 796 (799)
T KOG4162|consen 787 NPVLPFSNIP 796 (799)
T ss_pred CCcccccccC
Confidence 9876555443
No 56
>KOG2076|consensus
Probab=99.91 E-value=8.4e-21 Score=163.68 Aligned_cols=287 Identities=16% Similarity=0.125 Sum_probs=242.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhchHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhCcccHHHHHHHHHH
Q psy9209 40 FAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDESSSQAVLYFQRALKLNPNYLGVWTLLGHE 119 (349)
Q Consensus 40 ~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 119 (349)
..+...|+..+..|++++|..++.+++..+|.++.++..++.+ |...|+.+++....-.+-.++|.+.+.|..++..
T Consensus 140 ~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~I---yEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladl 216 (895)
T KOG2076|consen 140 RQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEI---YEQRGDIEKALNFWLLAAHLNPKDYELWKRLADL 216 (895)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHH---HHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHH
Confidence 4677888889999999999999999999999999997777655 5557999999999999999999999999999999
Q ss_pred HHhcCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCh-----HHHHHHHHHHHHhhCH
Q psy9209 120 YMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDP-----RMLTALGEAFEKQEKI 194 (349)
Q Consensus 120 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~~~~ 194 (349)
..++|++++|.-+|.++++.+|.+....+..+.+|.+.|+...|...|.+++...|... ..-...+..+...++-
T Consensus 217 s~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~ 296 (895)
T KOG2076|consen 217 SEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNER 296 (895)
T ss_pred HHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHH
Confidence 99999999999999999999999999999999999999999999999999999998322 2233457777788888
Q ss_pred HHHHHHHHHHHcc--ccccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc--ccc-------------------C-----
Q psy9209 195 SEAMKCYNKSRAI--GDADGKALFKLAKLYDKLNETEAAADLFMEFVSKL--DTF-------------------A----- 246 (349)
Q Consensus 195 ~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~-------------------~----- 246 (349)
+.|++.++.++.. +....+.+..++.++....+++.|........... ++. +
T Consensus 297 e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~ 376 (895)
T KOG2076|consen 297 ERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSY 376 (895)
T ss_pred HHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCc
Confidence 9999999999884 22234456677788888888888877766554410 000 0
Q ss_pred -----------------------------CCCCCcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHcccC-ChHHHHHHHH
Q psy9209 247 -----------------------------APPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEE-TAEEAKSLLR 296 (349)
Q Consensus 247 -----------------------------~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~-~~~~~~~~l~ 296 (349)
...........+..++..+...|++.+|+.++..+....+ .+..+|..+|
T Consensus 377 ~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a 456 (895)
T KOG2076|consen 377 DLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLA 456 (895)
T ss_pred cchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHH
Confidence 0111345678899999999999999999999999988765 4578999999
Q ss_pred HHHHHcCCCCCchhHHHHhhhcCCCCCCccccC
Q psy9209 297 SIAQKRQPDESSSQPMECAVVLDPVPPSTRSSK 329 (349)
Q Consensus 297 ~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~ 329 (349)
.|+..+|.+++|+++|++++.+.|++.+++..+
T Consensus 457 ~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~L 489 (895)
T KOG2076|consen 457 RCYMELGEYEEAIEFYEKVLILAPDNLDARITL 489 (895)
T ss_pred HHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhH
Confidence 999999999999999999999999999987766
No 57
>KOG1840|consensus
Probab=99.90 E-value=8e-22 Score=166.09 Aligned_cols=247 Identities=16% Similarity=0.125 Sum_probs=208.3
Q ss_pred chHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhh--------CcccHHHHHHHHHHHHhcCChHHHHHHHHHHHHh---
Q psy9209 71 TAEEAKSLLRSIAQKRQPDESSSQAVLYFQRALKL--------NPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEI--- 139 (349)
Q Consensus 71 ~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--- 139 (349)
.+|........++..|...|++++|+..++.++.+ .|.-......+|.+|..++++.+|+..|++++.+
T Consensus 194 ~~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~ 273 (508)
T KOG1840|consen 194 EDPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREE 273 (508)
T ss_pred CCchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 34444555666778888899999999999999998 5655666677999999999999999999999986
Q ss_pred -----CcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC--------CCChHHHHHHHHHHHHhhCHHHHHHHHHHHHc
Q psy9209 140 -----NNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVR--------PNDPRMLTALGEAFEKQEKISEAMKCYNKSRA 206 (349)
Q Consensus 140 -----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 206 (349)
+|....++.+||.+|...|++++|..++++++++. |.-...+..++.++...+++++|..+++++++
T Consensus 274 ~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~ 353 (508)
T KOG1840|consen 274 VFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALK 353 (508)
T ss_pred hcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 45557789999999999999999999999999873 22345678899999999999999999999988
Q ss_pred c--------ccccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCCCCCcchHHHHHHHHHHHHHhCCHHHHHHHH
Q psy9209 207 I--------GDADGKALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCA 278 (349)
Q Consensus 207 ~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 278 (349)
+ ++.-+.++.++|.+|..+|++++|.+++++++.+..... ...+......+..+|..+.+.+++.+|...|
T Consensus 354 i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~-~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~ 432 (508)
T KOG1840|consen 354 IYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELL-GKKDYGVGKPLNQLAEAYEELKKYEEAEQLF 432 (508)
T ss_pred HHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcc-cCcChhhhHHHHHHHHHHHHhcccchHHHHH
Confidence 7 234467889999999999999999999999999875421 2224456788999999999999999999999
Q ss_pred HHHHcc-------cCChHHHHHHHHHHHHHcCCCCCchhHHHHhhhc
Q psy9209 279 QKCLQH-------EETAEEAKSLLRSIAQKRQPDESSSQPMECAVVL 318 (349)
Q Consensus 279 ~~a~~~-------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 318 (349)
..+..+ .|+....+.+|+.+|..+|+++.|+++.++++..
T Consensus 433 ~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~~ 479 (508)
T KOG1840|consen 433 EEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLNA 479 (508)
T ss_pred HHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 998765 3566788899999999999999999999998743
No 58
>KOG1840|consensus
Probab=99.90 E-value=5.1e-21 Score=161.26 Aligned_cols=243 Identities=21% Similarity=0.184 Sum_probs=206.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhhh-----hchHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhh--------C
Q psy9209 40 FAFKYLANHHLKANNLDTAYKCAQKCLQHE-----ETAEEAKSLLRSIAQKRQPDESSSQAVLYFQRALKL--------N 106 (349)
Q Consensus 40 ~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~-----~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~--------~ 106 (349)
.+...++..|...|++++|+..++.+++.- -+++.....+..++..|...+++.+|+..|++++.+ +
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 466779999999999999999999999871 123344444556788888899999999999999976 3
Q ss_pred cccHHHHHHHHHHHHhcCChHHHHHHHHHHHHhC--------cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc-----
Q psy9209 107 PNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEIN--------NLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMV----- 173 (349)
Q Consensus 107 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~--------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----- 173 (349)
|....++.+||.+|...|++.+|..++++++++. |.-...+..++.++...+++++|..++++++++
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~ 359 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAP 359 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhc
Confidence 5556788999999999999999999999999873 334567888999999999999999999999887
Q ss_pred ---CCCChHHHHHHHHHHHHhhCHHHHHHHHHHHHccc--------cccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc
Q psy9209 174 ---RPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIG--------DADGKALFKLAKLYDKLNETEAAADLFMEFVSKL 242 (349)
Q Consensus 174 ---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 242 (349)
+|.-+..+.++|.+|..+|++++|.+++++++.+. +.....+..+|..+.+.+++.+|...|.++..+.
T Consensus 360 g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~ 439 (508)
T KOG1840|consen 360 GEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIM 439 (508)
T ss_pred cccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence 22345788999999999999999999999999873 3345678899999999999999999999999887
Q ss_pred cccCCCCCCcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHcc
Q psy9209 243 DTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQH 284 (349)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 284 (349)
+.. ..+++.....+.+|+.+|..+|++++|+++.++++..
T Consensus 440 ~~~--g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~~ 479 (508)
T KOG1840|consen 440 KLC--GPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLNA 479 (508)
T ss_pred HHh--CCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 443 4556778999999999999999999999999998753
No 59
>PLN02789 farnesyltranstransferase
Probab=99.90 E-value=2.9e-21 Score=156.14 Aligned_cols=205 Identities=11% Similarity=0.075 Sum_probs=186.9
Q ss_pred CcchHHHHHHHHHHHhhCcccHHHHHHHHHHHHhcC-ChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCH--HHHHH
Q psy9209 89 DESSSQAVLYFQRALKLNPNYLGVWTLLGHEYMEMK-NTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLP--YYGLY 165 (349)
Q Consensus 89 ~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~-~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~--~~A~~ 165 (349)
.+..++|+..+.++++++|.+..+|..++.++..+| ++++++..++++++.+|++..+|...+.++...|+. ++++.
T Consensus 50 ~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~ 129 (320)
T PLN02789 50 DERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELE 129 (320)
T ss_pred CCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHH
Confidence 478889999999999999999999999999999998 689999999999999999999999999999988874 78899
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHHHhhCHHHHHHHHHHHHccccccHHHHHHHHHHHHhc---CcH----HHHHHHHHHH
Q psy9209 166 YYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKLAKLYDKL---NET----EAAADLFMEF 238 (349)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~---~~~----~~A~~~~~~~ 238 (349)
+++++++.+|.+..+|...+.++...|++++++.++.++++.+|.+..+|..++.+.... |.+ ++++.+..++
T Consensus 130 ~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~a 209 (320)
T PLN02789 130 FTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDA 209 (320)
T ss_pred HHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999988765 333 4688888899
Q ss_pred HhcccccCCCCCCcchHHHHHHHHHHHHH----hCCHHHHHHHHHHHHcccCChHHHHHHHHHHHHHc
Q psy9209 239 VSKLDTFAAPPDKTCGFFAFKYLANHHLK----ANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKR 302 (349)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~ 302 (349)
+..+|+ +..+|..++.++.. .++..+|...+.+++...|.++.+...|+.++...
T Consensus 210 I~~~P~---------N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~ 268 (320)
T PLN02789 210 ILANPR---------NESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEG 268 (320)
T ss_pred HHhCCC---------CcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhh
Confidence 999999 89999999999988 45667899999999999999999999999999853
No 60
>KOG1125|consensus
Probab=99.90 E-value=2.6e-22 Score=165.22 Aligned_cols=263 Identities=17% Similarity=0.193 Sum_probs=212.5
Q ss_pred hhhhHHhhCcHHHHHHHHHHHHHhccccCCCCCcchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhchHHHHHHHHH
Q psy9209 2 RNKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRS 81 (349)
Q Consensus 2 ~a~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~ 81 (349)
.+..+++.|+..+|+-.|+.++. .+|.+. .+|..||.+....++-..|+..++++++++|++.++ +..
T Consensus 291 eG~~lm~nG~L~~A~LafEAAVk------qdP~ha---eAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~Nlea---Lma 358 (579)
T KOG1125|consen 291 EGCNLMKNGDLSEAALAFEAAVK------QDPQHA---EAWQKLGITQAENENEQNAISALRRCLELDPTNLEA---LMA 358 (579)
T ss_pred HHHHHHhcCCchHHHHHHHHHHh------hChHHH---HHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHH---HHH
Confidence 35678899999999999999994 444443 689999999999999999999999999999999888 556
Q ss_pred HHHhcCCCcchHHHHHHHHHHHhhCcccHHHHHH-------HHHHHHhcCChHHHHHHHHHHHHhCc--ccHHHHHHHHH
Q psy9209 82 IAQKRQPDESSSQAVLYFQRALKLNPNYLGVWTL-------LGHEYMEMKNTNAAIQCYRQAIEINN--LDYRAWYGLGQ 152 (349)
Q Consensus 82 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~-------la~~~~~~~~~~~A~~~~~~a~~~~~--~~~~~~~~l~~ 152 (349)
++..|...|.-.+|+.++.+-+...|........ ...-......+..-.+.|-.+....| .++++...||.
T Consensus 359 LAVSytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGV 438 (579)
T KOG1125|consen 359 LAVSYTNEGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGV 438 (579)
T ss_pred HHHHHhhhhhHHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHH
Confidence 6677888899999999999999888763211110 00011111223445667777777777 68999999999
Q ss_pred HHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhCHHHHHHHHHHHHccccccHHHHHHHHHHHHhcCcHHHHH
Q psy9209 153 TYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKLAKLYDKLNETEAAA 232 (349)
Q Consensus 153 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 232 (349)
+|...|+|++|+.+|+.++...|++...|..+|-.+....+.++|+..|++|+++.|....++++||..++.+|.|++|.
T Consensus 439 Ly~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~ 518 (579)
T KOG1125|consen 439 LYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAV 518 (579)
T ss_pred HHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcccccCCCCCCc-chHHHHHHHHHHHHHhCCHHHHHH
Q psy9209 233 DLFMEFVSKLDTFAAPPDKT-CGFFAFKYLANHHLKANNLDTAYK 276 (349)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~ 276 (349)
++|-.++.+.+........+ ....+|..|-.++...++.+-+..
T Consensus 519 ~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~ 563 (579)
T KOG1125|consen 519 KHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQE 563 (579)
T ss_pred HHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHH
Confidence 99999999877621111111 124567777677777777664443
No 61
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.89 E-value=3.8e-20 Score=157.51 Aligned_cols=272 Identities=11% Similarity=-0.041 Sum_probs=223.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhhhhchHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhCcccH-HHHHHHHHH
Q psy9209 41 AFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDESSSQAVLYFQRALKLNPNYL-GVWTLLGHE 119 (349)
Q Consensus 41 ~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~la~~ 119 (349)
.....|......|+++.|.+.+.++.+..|+....+...+ ......|+++.|..++.++.+..|+.. .+....+.+
T Consensus 86 ~~~~~glla~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA---~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l 162 (409)
T TIGR00540 86 KQTEEALLKLAEGDYAKAEKLIAKNADHAAEPVLNLIKAA---EAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRI 162 (409)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHH---HHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHH
Confidence 3466788888999999999999999988887655543333 445557999999999999999988875 466667999
Q ss_pred HHhcCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHH----HHHHHHHHhhCHH
Q psy9209 120 YMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLT----ALGEAFEKQEKIS 195 (349)
Q Consensus 120 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~----~l~~~~~~~~~~~ 195 (349)
+...|++++|...+++.++..|+++.++..++.++...|++++|.+.+.+..+....++.... ....-+...+..+
T Consensus 163 ~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~ 242 (409)
T TIGR00540 163 LLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMAD 242 (409)
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999987555544332 2222224455556
Q ss_pred HHHHHHHHHHcccc----ccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCCCCCcchHHH--HHHHHHHHHHhC
Q psy9209 196 EAMKCYNKSRAIGD----ADGKALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFA--FKYLANHHLKAN 269 (349)
Q Consensus 196 ~A~~~~~~a~~~~~----~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g 269 (349)
++...+.++....| +++..+..++..+...|++++|...++++++..|+ .... ...........+
T Consensus 243 ~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd---------~~~~~~~~l~~~~~l~~~ 313 (409)
T TIGR00540 243 EGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGD---------DRAISLPLCLPIPRLKPE 313 (409)
T ss_pred cCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCC---------cccchhHHHHHhhhcCCC
Confidence 66778888888777 58999999999999999999999999999999988 2321 122333334458
Q ss_pred CHHHHHHHHHHHHcccCChH--HHHHHHHHHHHHcCCCCCchhHHH--HhhhcCCCCCC
Q psy9209 270 NLDTAYKCAQKCLQHEETAE--EAKSLLRSIAQKRQPDESSSQPME--CAVVLDPVPPS 324 (349)
Q Consensus 270 ~~~~A~~~~~~a~~~~~~~~--~~~~~l~~~~~~~~~~~~A~~~~~--~a~~~~p~~~~ 324 (349)
+.+.+++.++++++..|+++ .....+|.++...|++++|.++|+ ++++..|++..
T Consensus 314 ~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~ 372 (409)
T TIGR00540 314 DNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDAND 372 (409)
T ss_pred ChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHH
Confidence 89999999999999999999 889999999999999999999999 68888887754
No 62
>PLN02789 farnesyltranstransferase
Probab=99.89 E-value=5e-20 Score=148.99 Aligned_cols=242 Identities=11% Similarity=0.080 Sum_probs=206.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhhhhchHHHHHHHHHHHHhcCCCc-chHHHHHHHHHHHhhCcccHHHHHHHHHH
Q psy9209 41 AFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDE-SSSQAVLYFQRALKLNPNYLGVWTLLGHE 119 (349)
Q Consensus 41 ~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 119 (349)
++..+-.++...+..++|+..+.+++.++|++..+|...+.+...+ | ++++++..+.++++.+|++..+|..++.+
T Consensus 39 a~~~~ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L---~~~l~eeL~~~~~~i~~npknyqaW~~R~~~ 115 (320)
T PLN02789 39 AMDYFRAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEAL---DADLEEELDFAEDVAEDNPKNYQIWHHRRWL 115 (320)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHc---chhHHHHHHHHHHHHHHCCcchHHhHHHHHH
Confidence 4444555567788999999999999999999999988777665443 5 68999999999999999999999999999
Q ss_pred HHhcCCh--HHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHh---hCH
Q psy9209 120 YMEMKNT--NAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQ---EKI 194 (349)
Q Consensus 120 ~~~~~~~--~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~ 194 (349)
+...|+. ++++.+++++++.+|++..+|...+.++...|+++++++++.++++.+|.+..+|...+.++... |.+
T Consensus 116 l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~ 195 (320)
T PLN02789 116 AEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGL 195 (320)
T ss_pred HHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccc
Confidence 9999874 78899999999999999999999999999999999999999999999999999999999998776 333
Q ss_pred ----HHHHHHHHHHHccccccHHHHHHHHHHHHh----cCcHHHHHHHHHHHHhcccccCCCCCCcchHHHHHHHHHHHH
Q psy9209 195 ----SEAMKCYNKSRAIGDADGKALFKLAKLYDK----LNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHL 266 (349)
Q Consensus 195 ----~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 266 (349)
++++.+..+++..+|++..+|..++.++.. .++..+|...+.+++...|. .+.++..|+.+|.
T Consensus 196 ~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~---------s~~al~~l~d~~~ 266 (320)
T PLN02789 196 EAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSN---------HVFALSDLLDLLC 266 (320)
T ss_pred cccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCC---------cHHHHHHHHHHHH
Confidence 578899999999999999999999999988 45667899999998887777 7889999999998
Q ss_pred HhC------------------CHHHHHHHHHHHHcccCChHHHHHH
Q psy9209 267 KAN------------------NLDTAYKCAQKCLQHEETAEEAKSL 294 (349)
Q Consensus 267 ~~g------------------~~~~A~~~~~~a~~~~~~~~~~~~~ 294 (349)
... ..++|...++..-+.+|-....|..
T Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l~~~d~ir~~yw~~ 312 (320)
T PLN02789 267 EGLQPTAEFRDTVDTLAEELSDSTLAQAVCSELEVADPMRRNYWAW 312 (320)
T ss_pred hhhccchhhhhhhhccccccccHHHHHHHHHHHHhhCcHHHHHHHH
Confidence 643 2356777777776666655555543
No 63
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.89 E-value=4.3e-19 Score=136.36 Aligned_cols=268 Identities=16% Similarity=0.127 Sum_probs=172.1
Q ss_pred hhCcHHHHHHHHHHHHHhccccCCCCCcchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhch--HHHHHHHHHHHHh
Q psy9209 8 KLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETA--EEAKSLLRSIAQK 85 (349)
Q Consensus 8 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~--~~~~~~l~~~~~~ 85 (349)
-.++.++|++.|.++++ .+|.. +.+...+|..+...|..+.|+.+-+..+. .|+. ..-...+..++.-
T Consensus 47 Ls~Q~dKAvdlF~e~l~------~d~~t---~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~-spdlT~~qr~lAl~qL~~D 116 (389)
T COG2956 47 LSNQPDKAVDLFLEMLQ------EDPET---FEAHLTLGNLFRSRGEVDRAIRIHQTLLE-SPDLTFEQRLLALQQLGRD 116 (389)
T ss_pred hhcCcchHHHHHHHHHh------cCchh---hHHHHHHHHHHHhcchHHHHHHHHHHHhc-CCCCchHHHHHHHHHHHHH
Confidence 34566677777776663 12211 24566777777777777777776655543 2322 2223345556666
Q ss_pred cCCCcchHHHHHHHHHHHhhCcccHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCccc-----HHHHHHHHHHHHHhCCH
Q psy9209 86 RQPDESSSQAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLD-----YRAWYGLGQTYEILRLP 160 (349)
Q Consensus 86 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~-----~~~~~~l~~~~~~~~~~ 160 (349)
|+..|-++.|...|....+...--..+...+..+|....+|++|++.-++..++.+.. ...+..++..+....+.
T Consensus 117 ym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~ 196 (389)
T COG2956 117 YMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDV 196 (389)
T ss_pred HHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhH
Confidence 6666777777777777665544455666677777777777777777777777665543 33455666666666777
Q ss_pred HHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhCHHHHHHHHHHHHcccccc-HHHHHHHHHHHHhcCcHHHHHHHHHHHH
Q psy9209 161 YYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDAD-GKALFKLAKLYDKLNETEAAADLFMEFV 239 (349)
Q Consensus 161 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 239 (349)
+.|...+.++++.+|+...+-..+|.+....|+|+.|++.++.+++.+|.. +.+.-.+..+|.++|+.++.+.++.++.
T Consensus 197 d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~ 276 (389)
T COG2956 197 DRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAM 276 (389)
T ss_pred HHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 777777777777777777777777777777777777777777777776653 4566666777777777777777777777
Q ss_pred hcccccCCCCCCcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHcccCChHHHHHHH
Q psy9209 240 SKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLL 295 (349)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l 295 (349)
+..+. ..+-..++..-....-.+.|..++.+-+...|+-...+..+
T Consensus 277 ~~~~g----------~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~ 322 (389)
T COG2956 277 ETNTG----------ADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLM 322 (389)
T ss_pred HccCC----------ccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHH
Confidence 76664 45555566666666666667777666666666654444433
No 64
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.88 E-value=1.2e-19 Score=139.34 Aligned_cols=267 Identities=13% Similarity=0.108 Sum_probs=229.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhhhhchHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhCccc-----HHHHHHHH
Q psy9209 43 KYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDESSSQAVLYFQRALKLNPNY-----LGVWTLLG 117 (349)
Q Consensus 43 ~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-----~~~~~~la 117 (349)
+..|..+.-.++.++|+..|..+++.+|...++...++++ +.+.|..+.|+...+..+. .|+. ..+...+|
T Consensus 39 Yv~GlNfLLs~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnL---fRsRGEvDRAIRiHQ~L~~-spdlT~~qr~lAl~qL~ 114 (389)
T COG2956 39 YVKGLNFLLSNQPDKAVDLFLEMLQEDPETFEAHLTLGNL---FRSRGEVDRAIRIHQTLLE-SPDLTFEQRLLALQQLG 114 (389)
T ss_pred HHhHHHHHhhcCcchHHHHHHHHHhcCchhhHHHHHHHHH---HHhcchHHHHHHHHHHHhc-CCCCchHHHHHHHHHHH
Confidence 4567788888999999999999999999999988878777 5556999999998877665 4543 34678999
Q ss_pred HHHHhcCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCh-----HHHHHHHHHHHHhh
Q psy9209 118 HEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDP-----RMLTALGEAFEKQE 192 (349)
Q Consensus 118 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~~ 192 (349)
.-|+..|-++.|...|....+...--..+...|..+|....+|++|++.-++..++.+..- ..++.++..+....
T Consensus 115 ~Dym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~ 194 (389)
T COG2956 115 RDYMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASS 194 (389)
T ss_pred HHHHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhh
Confidence 9999999999999999999886666678899999999999999999999999999987654 46778888888899
Q ss_pred CHHHHHHHHHHHHccccccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCCCCCcchHHHHHHHHHHHHHhCCHH
Q psy9209 193 KISEAMKCYNKSRAIGDADGKALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLD 272 (349)
Q Consensus 193 ~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 272 (349)
+.+.|+..+.++++.+|+...+-..+|.+....|+++.|++.++.+++.+|.. .+.+...|..+|.+.|+.+
T Consensus 195 ~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~y--------l~evl~~L~~~Y~~lg~~~ 266 (389)
T COG2956 195 DVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEY--------LSEVLEMLYECYAQLGKPA 266 (389)
T ss_pred hHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHH--------HHHHHHHHHHHHHHhCCHH
Confidence 99999999999999999999999999999999999999999999999999985 7889999999999999999
Q ss_pred HHHHHHHHHHcccCChHHHHHHHHHHHHHcCCCCCchhHHHHhhhcCCCC
Q psy9209 273 TAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDESSSQPMECAVVLDPVP 322 (349)
Q Consensus 273 ~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~ 322 (349)
+...++.++.+..+.. ++...++.+-....-.+.|..++.+-+...|+-
T Consensus 267 ~~~~fL~~~~~~~~g~-~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~ 315 (389)
T COG2956 267 EGLNFLRRAMETNTGA-DAELMLADLIELQEGIDAAQAYLTRQLRRKPTM 315 (389)
T ss_pred HHHHHHHHHHHccCCc-cHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcH
Confidence 9999999999987654 334445555555555677777777777777753
No 65
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.88 E-value=2.6e-19 Score=151.61 Aligned_cols=269 Identities=13% Similarity=0.019 Sum_probs=211.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhhhhchHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhCcccHHHH-HHHHHH
Q psy9209 41 AFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDESSSQAVLYFQRALKLNPNYLGVW-TLLGHE 119 (349)
Q Consensus 41 ~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~-~~la~~ 119 (349)
..+..|......|++++|.+...+.-...+ .+.....+ .+......|+++.|..++.++.+.+|+..... ...+.+
T Consensus 86 ~~~~~gl~a~~eGd~~~A~k~l~~~~~~~~-~p~l~~ll--aA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l 162 (398)
T PRK10747 86 KQTEQALLKLAEGDYQQVEKLMTRNADHAE-QPVVNYLL--AAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRI 162 (398)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhccc-chHHHHHH--HHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHH
Confidence 356677788888999999977776544322 23333222 23333557999999999999999999875433 455999
Q ss_pred HHhcCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHH--------HHHHHHHHh
Q psy9209 120 YMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLT--------ALGEAFEKQ 191 (349)
Q Consensus 120 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~--------~l~~~~~~~ 191 (349)
+...|++++|...+++..+..|+++.++..++.+|...|++++|+..+.+..+..+.++.... .+.......
T Consensus 163 ~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~ 242 (398)
T PRK10747 163 QLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMAD 242 (398)
T ss_pred HHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999988776554322 111111122
Q ss_pred hCHHHHHHHHHHHHccccccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCCCCCcchHHHHHHHHHHHHHhCCH
Q psy9209 192 EKISEAMKCYNKSRAIGDADGKALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNL 271 (349)
Q Consensus 192 ~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 271 (349)
.+-+.....++..-...|+++.+...++..+...|+.++|...++++++..++ +......+.+ ..++.
T Consensus 243 ~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~~----------~~l~~l~~~l--~~~~~ 310 (398)
T PRK10747 243 QGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQYD----------ERLVLLIPRL--KTNNP 310 (398)
T ss_pred cCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC----------HHHHHHHhhc--cCCCh
Confidence 23334444444444446778999999999999999999999999999995543 4444334443 44999
Q ss_pred HHHHHHHHHHHcccCChHHHHHHHHHHHHHcCCCCCchhHHHHhhhcCCCCCC
Q psy9209 272 DTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDESSSQPMECAVVLDPVPPS 324 (349)
Q Consensus 272 ~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~ 324 (349)
++++...++.++..|+++..+..+|.++...+++++|.++|+++++..|++..
T Consensus 311 ~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~ 363 (398)
T PRK10747 311 EQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYD 363 (398)
T ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHH
Confidence 99999999999999999999999999999999999999999999999999875
No 66
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.87 E-value=1.9e-18 Score=159.89 Aligned_cols=293 Identities=12% Similarity=0.088 Sum_probs=195.7
Q ss_pred hHHhhCcHHHHHHHHHHHHHhccccCCCCCcchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh--hhchHHHHHHHHHH
Q psy9209 5 LYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQH--EETAEEAKSLLRSI 82 (349)
Q Consensus 5 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~--~~~~~~~~~~l~~~ 82 (349)
.|.+.|+.++|..+|+++.+. ...|+. .+|..+...|.+.|++++|+..|.++... .|+. .. +..+
T Consensus 481 ~y~k~G~vd~A~~vf~eM~~~----Gv~Pdv----vTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~-vT---YnsL 548 (1060)
T PLN03218 481 TCAKSGKVDAMFEVFHEMVNA----GVEANV----HTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDR-VV---FNAL 548 (1060)
T ss_pred HHHhCcCHHHHHHHHHHHHHc----CCCCCH----HHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCH-HH---HHHH
Confidence 455666666666666665521 112221 45666777777777777777777766543 3432 12 2233
Q ss_pred HHhcCCCcchHHHHHHHHHHHhh----CcccHHHHHHHHHHHHhcCChHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHh
Q psy9209 83 AQKRQPDESSSQAVLYFQRALKL----NPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEIN-NLDYRAWYGLGQTYEIL 157 (349)
Q Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~ 157 (349)
...+.+.|++++|.+.+.++... .|+ ..++..+...|.+.|++++|.++|+++.+.+ +.+...|..+...|.+.
T Consensus 549 I~a~~k~G~~deA~~lf~eM~~~~~gi~PD-~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~ 627 (1060)
T PLN03218 549 ISACGQSGAVDRAFDVLAEMKAETHPIDPD-HITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQK 627 (1060)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhcCCCCCc-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhc
Confidence 33444557777777777777542 343 4566777777777777777777777777654 34566777777777778
Q ss_pred CCHHHHHHHHHHHHhc--CCCChHHHHHHHHHHHHhhCHHHHHHHHHHHHccc-cccHHHHHHHHHHHHhcCcHHHHHHH
Q psy9209 158 RLPYYGLYYYKQAHMV--RPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIG-DADGKALFKLAKLYDKLNETEAAADL 234 (349)
Q Consensus 158 ~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~ 234 (349)
|++++|+.+|.++.+. .| +...+..+...+.+.|++++|..+++.+.+.. +.+...+..+...|.+.|++++|...
T Consensus 628 G~~deAl~lf~eM~~~Gv~P-D~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~l 706 (1060)
T PLN03218 628 GDWDFALSIYDDMKKKGVKP-DEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALEL 706 (1060)
T ss_pred CCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHH
Confidence 8888888888777765 33 35567777777778888888888888777653 23566777888888888888888888
Q ss_pred HHHHHhcccccCCCCCCcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHcc--cCChHHHHHHHHHHHHHcCCCCCchhHH
Q psy9209 235 FMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQH--EETAEEAKSLLRSIAQKRQPDESSSQPM 312 (349)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 312 (349)
|+++...... .+...|..+...|.+.|++++|.+.|+++... .|+.. .+..+...+...|+.++|...+
T Consensus 707 f~eM~~~g~~--------PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~-Ty~sLL~a~~k~G~le~A~~l~ 777 (1060)
T PLN03218 707 YEDIKSIKLR--------PTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTI-TYSILLVASERKDDADVGLDLL 777 (1060)
T ss_pred HHHHHHcCCC--------CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHHCCCHHHHHHHH
Confidence 8877653211 14677888888888888888888888877643 45544 3444446777788888888888
Q ss_pred HHhhhcCC
Q psy9209 313 ECAVVLDP 320 (349)
Q Consensus 313 ~~a~~~~p 320 (349)
.++++...
T Consensus 778 ~~M~k~Gi 785 (1060)
T PLN03218 778 SQAKEDGI 785 (1060)
T ss_pred HHHHHcCC
Confidence 88776543
No 67
>KOG0550|consensus
Probab=99.87 E-value=9e-21 Score=150.02 Aligned_cols=275 Identities=11% Similarity=-0.017 Sum_probs=237.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhchHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhCcccHHHHHHHHH
Q psy9209 39 FFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDESSSQAVLYFQRALKLNPNYLGVWTLLGH 118 (349)
Q Consensus 39 ~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~ 118 (349)
+.-....|..++...+|..|+..+..++...|++...|. .-+..++..|++++|.-..++.+.++|..+..+...+.
T Consensus 49 Ae~~k~~gn~~yk~k~Y~nal~~yt~Ai~~~pd~a~yy~---nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~ 125 (486)
T KOG0550|consen 49 AEEAKEEGNAFYKQKTYGNALKNYTFAIDMCPDNASYYS---NRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQ 125 (486)
T ss_pred HHHHHhhcchHHHHhhHHHHHHHHHHHHHhCccchhhhc---hhHHHHHHHHhHhhcccchhhheecCCCccccccchhh
Confidence 345678889999999999999999999999999966643 33344555699999999999999999999999999999
Q ss_pred HHHhcCChHHHHHHHHHHH------------Hh------CcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHH
Q psy9209 119 EYMEMKNTNAAIQCYRQAI------------EI------NNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRM 180 (349)
Q Consensus 119 ~~~~~~~~~~A~~~~~~a~------------~~------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 180 (349)
++...++..+|.+.++..- .+ .|....+...-+.++...|++++|...--..+++++.+..+
T Consensus 126 c~~a~~~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~~a 205 (486)
T KOG0550|consen 126 CHLALSDLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDATNAEA 205 (486)
T ss_pred hhhhhHHHHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccchhHH
Confidence 9999988888886665321 00 12234455667889999999999999999999999999999
Q ss_pred HHHHHHHHHHhhCHHHHHHHHHHHHccccccH------------HHHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCC
Q psy9209 181 LTALGEAFEKQEKISEAMKCYNKSRAIGDADG------------KALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAP 248 (349)
Q Consensus 181 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~------------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 248 (349)
+...|.++...++.+.|+..|++++.++|+.. ..+-.-|+-..+.|++..|.+.|..++.++|.
T Consensus 206 l~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~---- 281 (486)
T KOG0550|consen 206 LYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPS---- 281 (486)
T ss_pred HHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCcc----
Confidence 99999999999999999999999999999763 34556688889999999999999999999998
Q ss_pred CCCcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHcccCChHHHHHHHHHHHHHcCCCCCchhHHHHhhhcCCC
Q psy9209 249 PDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDESSSQPMECAVVLDPV 321 (349)
Q Consensus 249 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~ 321 (349)
....+...|.+++.+..+.|+..+|+.-.+.++.++|....++...|.|+..++++++|++.|+++++...+
T Consensus 282 -n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s 353 (486)
T KOG0550|consen 282 -NKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKD 353 (486)
T ss_pred -ccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 355578899999999999999999999999999999999999999999999999999999999999988766
No 68
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.87 E-value=3.4e-18 Score=158.23 Aligned_cols=291 Identities=10% Similarity=0.047 Sum_probs=231.8
Q ss_pred hHHhhCcHHHHHHHHHHHHHhccccCCCCCcchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhc-hHHHHHHHHHHH
Q psy9209 5 LYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEET-AEEAKSLLRSIA 83 (349)
Q Consensus 5 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~~l~~~~ 83 (349)
.+.+.|+++.|..+|.++.+. ...|+. .+|..+...|.+.|++++|..+|+++...... +...+ ..+.
T Consensus 446 a~~k~g~~e~A~~lf~~M~~~----Gl~pD~----~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTy---naLI 514 (1060)
T PLN03218 446 VCASSQDIDGALRVLRLVQEA----GLKADC----KLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTF---GALI 514 (1060)
T ss_pred HHHhCcCHHHHHHHHHHHHHc----CCCCCH----HHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHH---HHHH
Confidence 456778888888888887632 122222 56888888999999999999999988865321 23333 3333
Q ss_pred HhcCCCcchHHHHHHHHHHHhhC--cccHHHHHHHHHHHHhcCChHHHHHHHHHHHHh----CcccHHHHHHHHHHHHHh
Q psy9209 84 QKRQPDESSSQAVLYFQRALKLN--PNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEI----NNLDYRAWYGLGQTYEIL 157 (349)
Q Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~----~~~~~~~~~~l~~~~~~~ 157 (349)
..|.+.|++++|+..|.+..... |+ ..+|..+...+.+.|++++|.+.|.++... .| +...+..+...|.+.
T Consensus 515 ~gy~k~G~~eeAl~lf~~M~~~Gv~PD-~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~P-D~vTynaLI~ay~k~ 592 (1060)
T PLN03218 515 DGCARAGQVAKAFGAYGIMRSKNVKPD-RVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDP-DHITVGALMKACANA 592 (1060)
T ss_pred HHHHHCcCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCC-cHHHHHHHHHHHHHC
Confidence 45666799999999999886643 43 678888999999999999999999998763 34 456788888899999
Q ss_pred CCHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHhhCHHHHHHHHHHHHcc--ccccHHHHHHHHHHHHhcCcHHHHHHH
Q psy9209 158 RLPYYGLYYYKQAHMVR-PNDPRMLTALGEAFEKQEKISEAMKCYNKSRAI--GDADGKALFKLAKLYDKLNETEAAADL 234 (349)
Q Consensus 158 ~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~ 234 (349)
|++++|.+.|+++.+.. +.+...|..+...|.+.|++++|..+|+++.+. .| +...+..+...+.+.|++++|..+
T Consensus 593 G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~P-D~~TynsLI~a~~k~G~~eeA~~l 671 (1060)
T PLN03218 593 GQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKP-DEVFFSALVDVAGHAGDLDKAFEI 671 (1060)
T ss_pred CCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhCCCHHHHHHH
Confidence 99999999999998875 456788899999999999999999999998876 45 467888889999999999999999
Q ss_pred HHHHHhcccccCCCCCCcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHcc--cCChHHHHHHHHHHHHHcCCCCCchhHH
Q psy9209 235 FMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQH--EETAEEAKSLLRSIAQKRQPDESSSQPM 312 (349)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 312 (349)
++++.+..... +...+..+...|.+.|++++|...|+++... .|+ ...|..+...+.+.|+.++|.+.|
T Consensus 672 ~~eM~k~G~~p--------d~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~Pd-vvtyN~LI~gy~k~G~~eeAlelf 742 (1060)
T PLN03218 672 LQDARKQGIKL--------GTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPT-VSTMNALITALCEGNQLPKALEVL 742 (1060)
T ss_pred HHHHHHcCCCC--------CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHCCCHHHHHHHH
Confidence 99988754321 5788999999999999999999999998653 444 566888889999999999999999
Q ss_pred HHhhhc
Q psy9209 313 ECAVVL 318 (349)
Q Consensus 313 ~~a~~~ 318 (349)
++....
T Consensus 743 ~eM~~~ 748 (1060)
T PLN03218 743 SEMKRL 748 (1060)
T ss_pred HHHHHc
Confidence 987654
No 69
>KOG4162|consensus
Probab=99.86 E-value=7e-19 Score=149.62 Aligned_cols=304 Identities=14% Similarity=0.069 Sum_probs=217.7
Q ss_pred HHhhCcHHHHHHHHHHHHHhccccCCCCCcchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhh--hchHHHHHHHHHHH
Q psy9209 6 YDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHE--ETAEEAKSLLRSIA 83 (349)
Q Consensus 6 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~~l~~~~ 83 (349)
....|+++.+.+.|++++...-.. ...|+.++.++...|.-..|+...++.+... |.++....... .
T Consensus 333 l~~~g~f~~lae~fE~~~~~~~~~---------~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmas--k 401 (799)
T KOG4162|consen 333 LSRCGQFEVLAEQFEQALPFSFGE---------HERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMAS--K 401 (799)
T ss_pred HHHHHHHHHHHHHHHHHhHhhhhh---------HHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHHH--H
Confidence 456788888888888877321111 1468888888888888888888888887776 54444432222 2
Q ss_pred HhcCCCcchHHHHHHHHHHHhhC-----cccHHHHHHHHHHHHhcC-----------ChHHHHHHHHHHHHhCcccHHHH
Q psy9209 84 QKRQPDESSSQAVLYFQRALKLN-----PNYLGVWTLLGHEYMEMK-----------NTNAAIQCYRQAIEINNLDYRAW 147 (349)
Q Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~-----~~~~~~~~~la~~~~~~~-----------~~~~A~~~~~~a~~~~~~~~~~~ 147 (349)
.+..+.+..++++.+..+++... --.+..+..+|.+|..+- ...+++..++++++.+|.|+.+.
T Consensus 402 lc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp~~i 481 (799)
T KOG4162|consen 402 LCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDPLVI 481 (799)
T ss_pred HHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCchHH
Confidence 23334466666777776666532 112345555555554321 13456666666766677777777
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhc-CCCChHHHHHHHHHHHHhhCHHHHHHHHHHHHcccccc---------------
Q psy9209 148 YGLGQTYEILRLPYYGLYYYKQAHMV-RPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDAD--------------- 211 (349)
Q Consensus 148 ~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~--------------- 211 (349)
+.++.-|...++.+.|..+..++++. ..+++.+|..++.++...+++.+|+.....++...|+|
T Consensus 482 f~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~~~~~ 561 (799)
T KOG4162|consen 482 FYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIELTFN 561 (799)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhhhhcc
Confidence 77777666677777777777777766 33445666666666666666666666666555544431
Q ss_pred --------------------------------------------------------------------------------
Q psy9209 212 -------------------------------------------------------------------------------- 211 (349)
Q Consensus 212 -------------------------------------------------------------------------------- 211 (349)
T Consensus 562 ~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~ 641 (799)
T KOG4162|consen 562 DREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPG 641 (799)
T ss_pred cHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcccccCC
Confidence
Q ss_pred --------HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCCCCCcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHc
Q psy9209 212 --------GKALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQ 283 (349)
Q Consensus 212 --------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 283 (349)
...|...+..+...++.++|..++.++-.+.|. .+..|+..|.++...|++.+|...|..++.
T Consensus 642 ~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l---------~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ 712 (799)
T KOG4162|consen 642 PDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPL---------SASVYYLRGLLLEVKGQLEEAKEAFLVALA 712 (799)
T ss_pred CCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchh---------hHHHHHHhhHHHHHHHhhHHHHHHHHHHHh
Confidence 234556677777888888888888888888887 789999999999999999999999999999
Q ss_pred ccCChHHHHHHHHHHHHHcCCCCCchh--HHHHhhhcCCCCCCccccC
Q psy9209 284 HEETAEEAKSLLRSIAQKRQPDESSSQ--PMECAVVLDPVPPSTRSSK 329 (349)
Q Consensus 284 ~~~~~~~~~~~l~~~~~~~~~~~~A~~--~~~~a~~~~p~~~~~~~~~ 329 (349)
++|+++.....+|.++...|+..-|.. .+..+++++|.++.+|+.+
T Consensus 713 ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~L 760 (799)
T KOG4162|consen 713 LDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYL 760 (799)
T ss_pred cCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHH
Confidence 999999999999999999999988888 9999999999999999876
No 70
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.86 E-value=1.2e-19 Score=165.34 Aligned_cols=286 Identities=9% Similarity=-0.004 Sum_probs=236.5
Q ss_pred hhHHhhCcHHHHHHHHHHHHHhccccCCCCCcchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh--hhchHHHHHHHHH
Q psy9209 4 KLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQH--EETAEEAKSLLRS 81 (349)
Q Consensus 4 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~--~~~~~~~~~~l~~ 81 (349)
..|.+.|++++|..+|++.. . ++ ..+|..+...|.+.|++++|+..|+++... .|+... +..
T Consensus 267 ~~y~k~g~~~~A~~vf~~m~----~----~~----~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t----~~~ 330 (697)
T PLN03081 267 DMYSKCGDIEDARCVFDGMP----E----KT----TVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFT----FSI 330 (697)
T ss_pred HHHHHCCCHHHHHHHHHhCC----C----CC----hhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHH----HHH
Confidence 46888999999999997643 1 11 157999999999999999999999998753 454332 344
Q ss_pred HHHhcCCCcchHHHHHHHHHHHhhC-cccHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCH
Q psy9209 82 IAQKRQPDESSSQAVLYFQRALKLN-PNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLP 160 (349)
Q Consensus 82 ~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~ 160 (349)
+...+.+.|++++|.+.+..+++.. +.+..++..+...|.+.|++++|...|+++.+ .+..+|..+...|.+.|+.
T Consensus 331 ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~---~d~~t~n~lI~~y~~~G~~ 407 (697)
T PLN03081 331 MIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR---KNLISWNALIAGYGNHGRG 407 (697)
T ss_pred HHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC---CCeeeHHHHHHHHHHcCCH
Confidence 4455666799999999999998875 45667889999999999999999999998764 3567899999999999999
Q ss_pred HHHHHHHHHHHhcC-CCChHHHHHHHHHHHHhhCHHHHHHHHHHHHcccc--ccHHHHHHHHHHHHhcCcHHHHHHHHHH
Q psy9209 161 YYGLYYYKQAHMVR-PNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGD--ADGKALFKLAKLYDKLNETEAAADLFME 237 (349)
Q Consensus 161 ~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 237 (349)
++|++.|+++.+.. ..+..++..+...+...|..++|..+|+.+.+..+ .+...|..+...+.+.|++++|.+.+++
T Consensus 408 ~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~ 487 (697)
T PLN03081 408 TKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRR 487 (697)
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHH
Confidence 99999999988752 22456778888889999999999999999976422 2456788899999999999999999876
Q ss_pred HHhcccccCCCCCCcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHcccCChHHHHHHHHHHHHHcCCCCCchhHHHHhhh
Q psy9209 238 FVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDESSSQPMECAVV 317 (349)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 317 (349)
+ ...| ...+|..+...+...|+++.|...+++.+++.|++...+..+..+|...|++++|.+.++...+
T Consensus 488 ~-~~~p----------~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~ 556 (697)
T PLN03081 488 A-PFKP----------TVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKR 556 (697)
T ss_pred C-CCCC----------CHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 4 2333 3678999999999999999999999999999999888999999999999999999999998765
Q ss_pred cC
Q psy9209 318 LD 319 (349)
Q Consensus 318 ~~ 319 (349)
..
T Consensus 557 ~g 558 (697)
T PLN03081 557 KG 558 (697)
T ss_pred cC
Confidence 43
No 71
>KOG0550|consensus
Probab=99.86 E-value=3.3e-20 Score=146.87 Aligned_cols=264 Identities=14% Similarity=0.077 Sum_probs=218.8
Q ss_pred hhhHHhhCcHHHHHHHHHHHHHhccccCCCCCcchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhchHHHHHHHHHH
Q psy9209 3 NKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSI 82 (349)
Q Consensus 3 a~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~ 82 (349)
+..+.++.+|..|+..+..+++..+... ..|...+..++..|+|++|....++.+++.|..+... ...
T Consensus 56 gn~~yk~k~Y~nal~~yt~Ai~~~pd~a---------~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~---~r~ 123 (486)
T KOG0550|consen 56 GNAFYKQKTYGNALKNYTFAIDMCPDNA---------SYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQ---LRE 123 (486)
T ss_pred cchHHHHhhHHHHHHHHHHHHHhCccch---------hhhchhHHHHHHHHhHhhcccchhhheecCCCccccc---cch
Confidence 4567788899999999999996554442 4688999999999999999999999999988876643 222
Q ss_pred HHhcCCCcchHHHHHHHH---------------HHHhhC---cccHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCcccH
Q psy9209 83 AQKRQPDESSSQAVLYFQ---------------RALKLN---PNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDY 144 (349)
Q Consensus 83 ~~~~~~~~~~~~A~~~~~---------------~~~~~~---~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~ 144 (349)
+.++...++..+|...++ +.+..+ |....+....+.++...|++++|...--..+++++.+.
T Consensus 124 ~~c~~a~~~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~ 203 (486)
T KOG0550|consen 124 GQCHLALSDLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDATNA 203 (486)
T ss_pred hhhhhhhHHHHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccchh
Confidence 333333344444443333 111111 22234456778999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCh------------HHHHHHHHHHHHhhCHHHHHHHHHHHHcccccc-
Q psy9209 145 RAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDP------------RMLTALGEAFEKQEKISEAMKCYNKSRAIGDAD- 211 (349)
Q Consensus 145 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~------------~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~- 211 (349)
.+++..|.+++..++.+.|+..|++++.++|+.. ..+..-|+-.++.|++.+|.++|..+|.++|++
T Consensus 204 ~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~ 283 (486)
T KOG0550|consen 204 EALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNK 283 (486)
T ss_pred HHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCcccc
Confidence 9999999999999999999999999999999865 346677888999999999999999999999985
Q ss_pred ---HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCCCCCcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHcccCC
Q psy9209 212 ---GKALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEET 287 (349)
Q Consensus 212 ---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 287 (349)
...|.+++.+..++|+..+|+...+.++.+++. ...++...|.++...++|++|.+.|+++++...+
T Consensus 284 ~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~s---------yikall~ra~c~l~le~~e~AV~d~~~a~q~~~s 353 (486)
T KOG0550|consen 284 KTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSS---------YIKALLRRANCHLALEKWEEAVEDYEKAMQLEKD 353 (486)
T ss_pred chhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 557889999999999999999999999999998 8999999999999999999999999999987655
No 72
>KOG1156|consensus
Probab=99.86 E-value=3.6e-18 Score=142.70 Aligned_cols=307 Identities=14% Similarity=0.173 Sum_probs=246.6
Q ss_pred HhhCcHHHHHHHHHHHHHhccccCCCCCcchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhchHHHHHHHHHHHHhc
Q psy9209 7 DKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKR 86 (349)
Q Consensus 7 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~ 86 (349)
...++|...+...+.++.+.+... .++-..|..+...|+-++|......++..++.+...|.+++.+ +
T Consensus 18 yE~kQYkkgLK~~~~iL~k~~eHg---------eslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~---~ 85 (700)
T KOG1156|consen 18 YETKQYKKGLKLIKQILKKFPEHG---------ESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLL---Q 85 (700)
T ss_pred HHHHHHHhHHHHHHHHHHhCCccc---------hhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHH---H
Confidence 467889999999999986444333 4678899999999999999999999999999999998888866 4
Q ss_pred CCCcchHHHHHHHHHHHhhCcccHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHHHHHHH
Q psy9209 87 QPDESSSQAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYY 166 (349)
Q Consensus 87 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 166 (349)
....+|++|+++|+.|+.++|++...+.-++.+..++++++.....-.+.++..|.....|...+..+...|++..|...
T Consensus 86 R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~i 165 (700)
T KOG1156|consen 86 RSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEI 165 (700)
T ss_pred hhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44689999999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred HHHHHhcC---CCCh---------------------------------------HHHHHHHHHHHHhhCHHHHHHHHHHH
Q psy9209 167 YKQAHMVR---PNDP---------------------------------------RMLTALGEAFEKQEKISEAMKCYNKS 204 (349)
Q Consensus 167 ~~~~~~~~---~~~~---------------------------------------~~~~~l~~~~~~~~~~~~A~~~~~~a 204 (349)
.+...+.. |+.. ......|.++.+++++++|...|...
T Consensus 166 l~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~L 245 (700)
T KOG1156|consen 166 LEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRL 245 (700)
T ss_pred HHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHH
Confidence 77766543 2211 11234577788999999999999999
Q ss_pred HccccccHHHHHHHHHHHHhcCcHHHHH-HHHHHHHhcccccC-------------------------------------
Q psy9209 205 RAIGDADGKALFKLAKLYDKLNETEAAA-DLFMEFVSKLDTFA------------------------------------- 246 (349)
Q Consensus 205 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~-~~~~~~~~~~~~~~------------------------------------- 246 (349)
+..+|++...+..+-.++..-.+.-++. ..|...-+..|...
T Consensus 246 l~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~d 325 (700)
T KOG1156|consen 246 LERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKD 325 (700)
T ss_pred HhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhh
Confidence 9999998777766655553221222222 33333222222110
Q ss_pred -------------------------------------CCCCCcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHcccCChH
Q psy9209 247 -------------------------------------APPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAE 289 (349)
Q Consensus 247 -------------------------------------~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~ 289 (349)
.........+.++.++..+...|+++.|..+++.++...|+..
T Consensus 326 l~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTli 405 (700)
T KOG1156|consen 326 LRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLI 405 (700)
T ss_pred hHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHH
Confidence 0012223456677889999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCCCCchhHHHHhhhcCCCCCCc
Q psy9209 290 EAKSLLRSIAQKRQPDESSSQPMECAVVLDPVPPST 325 (349)
Q Consensus 290 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~ 325 (349)
+.+..-++++...|+.++|..+++.+.++|-.|..+
T Consensus 406 Ely~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~I 441 (700)
T KOG1156|consen 406 ELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAI 441 (700)
T ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHH
Confidence 999999999999999999999999999998776544
No 73
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.85 E-value=6.8e-18 Score=142.32 Aligned_cols=308 Identities=14% Similarity=-0.030 Sum_probs=221.3
Q ss_pred hhhhHHhhCcHHHHHHHHHHHHHhccccCCCCCcchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhchHHHHHHHHH
Q psy9209 2 RNKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRS 81 (349)
Q Consensus 2 ~a~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~ 81 (349)
.|.++...|+.+.+...+.++....+... + . .......+..+...|++++|...+++++..+|++..++.....
T Consensus 12 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~---~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~ 85 (355)
T cd05804 12 AALLLLLGGERPAAAAKAAAAAQALAARA-T--E---RERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKLHLG 85 (355)
T ss_pred HHHHHHhcCCcchHHHHHHHHHHHhccCC-C--H---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHhHH
Confidence 46677788999999888888875544332 1 1 2456678999999999999999999999999998876542001
Q ss_pred HHHhcCCCcchHHHHHHHHHHHhhCcccHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHH
Q psy9209 82 IAQKRQPDESSSQAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPY 161 (349)
Q Consensus 82 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~ 161 (349)
........+....+.+.+.......|........+|.++...|++++|+..++++++..|+++.++..+|.++...|+++
T Consensus 86 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~ 165 (355)
T cd05804 86 AFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFK 165 (355)
T ss_pred HHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHH
Confidence 11111223556666666655445667777788899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCh----HHHHHHHHHHHHhhCHHHHHHHHHHHHccccc--cHHHHH---HHHHHHHhcCcHHHHH
Q psy9209 162 YGLYYYKQAHMVRPNDP----RMLTALGEAFEKQEKISEAMKCYNKSRAIGDA--DGKALF---KLAKLYDKLNETEAAA 232 (349)
Q Consensus 162 ~A~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~--~~~~~~---~l~~~~~~~~~~~~A~ 232 (349)
+|+.++++++...|.++ ..+..+|.++...|++++|+..+++++...|. ...... .+...+...|....+.
T Consensus 166 eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~ 245 (355)
T cd05804 166 EGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGD 245 (355)
T ss_pred HHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHH
Confidence 99999999999887543 34568999999999999999999999876652 111111 2222233344333332
Q ss_pred HHHHHHHhcccccCCCCCCcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHcccCC---------hHHHHHHHHHHHHHcC
Q psy9209 233 DLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEET---------AEEAKSLLRSIAQKRQ 303 (349)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~---------~~~~~~~l~~~~~~~~ 303 (349)
.+ +.+....+.. ... +.........+.++...|+.++|...++........ ........+.++...|
T Consensus 246 ~w-~~~~~~~~~~--~~~-~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g 321 (355)
T cd05804 246 RW-EDLADYAAWH--FPD-HGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEG 321 (355)
T ss_pred HH-HHHHHHHHhh--cCc-ccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcC
Confidence 22 2222211110 000 112333346888899999999999999887653322 3455677888999999
Q ss_pred CCCCchhHHHHhhhcC
Q psy9209 304 PDESSSQPMECAVVLD 319 (349)
Q Consensus 304 ~~~~A~~~~~~a~~~~ 319 (349)
++++|+..+..++.+.
T Consensus 322 ~~~~A~~~L~~al~~a 337 (355)
T cd05804 322 NYATALELLGPVRDDL 337 (355)
T ss_pred CHHHHHHHHHHHHHHH
Confidence 9999999999998764
No 74
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.84 E-value=7.7e-18 Score=153.54 Aligned_cols=300 Identities=12% Similarity=0.038 Sum_probs=237.0
Q ss_pred hhHHhhCcHHHHHHHHHHHHHhccccCCCCCcch-------------------------------hHHHHHHHHHHHHhc
Q psy9209 4 KLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTC-------------------------------GFFAFKYLANHHLKA 52 (349)
Q Consensus 4 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~-------------------------------~~~~~~~l~~~~~~~ 52 (349)
..|.+.|++++|+.+|+++.+.- ..|+... -..++..+...|.+.
T Consensus 197 ~~~~~~g~~~~A~~lf~~M~~~g----~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~ 272 (697)
T PLN03081 197 GGLVDAGNYREAFALFREMWEDG----SDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKC 272 (697)
T ss_pred HHHHHCcCHHHHHHHHHHHHHhC----CCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHC
Confidence 45778899999999999987421 1111100 012456778889999
Q ss_pred CCHHHHHHHHHHHhhhhhchHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhC-cccHHHHHHHHHHHHhcCChHHHHH
Q psy9209 53 NNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDESSSQAVLYFQRALKLN-PNYLGVWTLLGHEYMEMKNTNAAIQ 131 (349)
Q Consensus 53 ~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~ 131 (349)
|++++|...|+++... +...|. .+...|.+.|++++|+..|++..... ..+..++..+...+.+.|++++|.+
T Consensus 273 g~~~~A~~vf~~m~~~---~~vt~n---~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~ 346 (697)
T PLN03081 273 GDIEDARCVFDGMPEK---TTVAWN---SMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQ 346 (697)
T ss_pred CCHHHHHHHHHhCCCC---ChhHHH---HHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHH
Confidence 9999999999887542 334433 34455666799999999999987643 2246688889999999999999999
Q ss_pred HHHHHHHhC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhCHHHHHHHHHHHHcc--c
Q psy9209 132 CYRQAIEIN-NLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAI--G 208 (349)
Q Consensus 132 ~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~ 208 (349)
.+..+++.. +.+..++..+...|.+.|++++|...|+++.+ .+...|..+...|.+.|+.++|++.|+++.+. .
T Consensus 347 i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~---~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~ 423 (697)
T PLN03081 347 AHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR---KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVA 423 (697)
T ss_pred HHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC---CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 999998875 55677888999999999999999999998754 35678999999999999999999999998865 4
Q ss_pred cccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCCCCCcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHcccCCh
Q psy9209 209 DADGKALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETA 288 (349)
Q Consensus 209 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~ 288 (349)
| +...+..+...+...|..++|.++|+.+.+..+- ......|..+...+.+.|++++|.+.+++. ...|+
T Consensus 424 P-d~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~-------~p~~~~y~~li~~l~r~G~~~eA~~~~~~~-~~~p~- 493 (697)
T PLN03081 424 P-NHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRI-------KPRAMHYACMIELLGREGLLDEAYAMIRRA-PFKPT- 493 (697)
T ss_pred C-CHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCC-------CCCccchHhHHHHHHhcCCHHHHHHHHHHC-CCCCC-
Confidence 5 5667888888999999999999999998764221 013677889999999999999999999875 33444
Q ss_pred HHHHHHHHHHHHHcCCCCCchhHHHHhhhcCCCCCCcc
Q psy9209 289 EEAKSLLRSIAQKRQPDESSSQPMECAVVLDPVPPSTR 326 (349)
Q Consensus 289 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~ 326 (349)
...|..+...+...|+.+.|...+++.+++.|++...+
T Consensus 494 ~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y 531 (697)
T PLN03081 494 VNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNY 531 (697)
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcch
Confidence 45688888888899999999999999999999876543
No 75
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.83 E-value=2.8e-18 Score=135.75 Aligned_cols=189 Identities=13% Similarity=-0.024 Sum_probs=117.5
Q ss_pred CcccHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCcccH---HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChH---
Q psy9209 106 NPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDY---RAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPR--- 179 (349)
Q Consensus 106 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~---~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~--- 179 (349)
++..+..++.+|..+...|++++|+..|++++...|.++ .+++.+|.++...|++++|+..++++++..|+++.
T Consensus 29 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 108 (235)
T TIGR03302 29 EEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADY 108 (235)
T ss_pred ccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHH
Confidence 344566777777777777777777777777777777654 46677777777777777777777777777776665
Q ss_pred HHHHHHHHHHHh--------hCHHHHHHHHHHHHccccccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCCCCC
Q psy9209 180 MLTALGEAFEKQ--------EKISEAMKCYNKSRAIGDADGKALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDK 251 (349)
Q Consensus 180 ~~~~l~~~~~~~--------~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 251 (349)
+++.+|.++... |++++|+..+++++..+|++...+..+..+.... ..
T Consensus 109 a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~-----------------~~------- 164 (235)
T TIGR03302 109 AYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLR-----------------NR------- 164 (235)
T ss_pred HHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHH-----------------HH-------
Confidence 567777777665 6777777777777777777654432221111000 00
Q ss_pred cchHHHHHHHHHHHHHhCCHHHHHHHHHHHHcccCC---hHHHHHHHHHHHHHcCCCCCchhHHHHhhhcCC
Q psy9209 252 TCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEET---AEEAKSLLRSIAQKRQPDESSSQPMECAVVLDP 320 (349)
Q Consensus 252 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p 320 (349)
.......+|.++...|++.+|+..+++++...|+ .+.++..++.++...|++++|..+++......|
T Consensus 165 --~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 165 --LAGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred --HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 1122234555566666666666666666655443 345556666666666666666665555444433
No 76
>KOG1127|consensus
Probab=99.83 E-value=6.5e-19 Score=153.42 Aligned_cols=299 Identities=16% Similarity=0.105 Sum_probs=184.3
Q ss_pred CcHHHHHHHHHHHHHhccccCCCCCcchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhchHHHHHHHHHH-------
Q psy9209 10 NETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSI------- 82 (349)
Q Consensus 10 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~------- 82 (349)
.+...|...|-+++.. ++.. +.+|..+|.+|...-+...|..+|.++.++++.+.+++......
T Consensus 472 K~~~~al~ali~alrl-d~~~--------apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~w 542 (1238)
T KOG1127|consen 472 KNSALALHALIRALRL-DVSL--------APAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTW 542 (1238)
T ss_pred hhHHHHHHHHHHHHhc-ccch--------hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccH
Confidence 3467788888888732 2222 14789999999998899999999999999998887764333322
Q ss_pred --------------------------HHhcCCCcchHHHHHHHHHHHhhCcccHHHHHHHHHHHHhcCChHHHHHHHHHH
Q psy9209 83 --------------------------AQKRQPDESSSQAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQA 136 (349)
Q Consensus 83 --------------------------~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 136 (349)
+..|...++...|+..|+.++..+|++...|..+|.+|...|++..|++.|.++
T Consensus 543 e~a~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kA 622 (1238)
T KOG1127|consen 543 EEAFEICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKA 622 (1238)
T ss_pred HHHHHHHHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhh
Confidence 223334455555555555555555555555555555555555555555555555
Q ss_pred HHhCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCh-------HHHHHHHHHHHHhhCHHHHHHHHHHHHcc--
Q psy9209 137 IEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDP-------RMLTALGEAFEKQEKISEAMKCYNKSRAI-- 207 (349)
Q Consensus 137 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-- 207 (349)
..++|.+.-+.+..+.+....|+|.+|+..+...+....... +.+...+..+...|=..+|..+++++++.
T Consensus 623 s~LrP~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~ 702 (1238)
T KOG1127|consen 623 SLLRPLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFI 702 (1238)
T ss_pred HhcCcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 555555555555555555555555555555555554322221 22222222222223333333333333221
Q ss_pred -----c----------------------cc-----------------------------------------cHHHHHHHH
Q psy9209 208 -----G----------------------DA-----------------------------------------DGKALFKLA 219 (349)
Q Consensus 208 -----~----------------------~~-----------------------------------------~~~~~~~l~ 219 (349)
. |+ .+..|+++|
T Consensus 703 ~~l~h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLG 782 (1238)
T KOG1127|consen 703 VSLIHSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLG 782 (1238)
T ss_pred HHHHHhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHh
Confidence 0 00 033455666
Q ss_pred HHHHh--------cCcHHHHHHHHHHHHhcccccCCCCCCcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHcccCChHHH
Q psy9209 220 KLYDK--------LNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEA 291 (349)
Q Consensus 220 ~~~~~--------~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 291 (349)
..|.. +.+...|+.++.+++++..+ +...|..||.+ ...|++.-|..+|-+.+...|.....
T Consensus 783 inylr~f~~l~et~~~~~~Ai~c~KkaV~L~an---------n~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~~~~~ 852 (1238)
T KOG1127|consen 783 INYLRYFLLLGETMKDACTAIRCCKKAVSLCAN---------NEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPTCHCQ 852 (1238)
T ss_pred HHHHHHHHHcCCcchhHHHHHHHHHHHHHHhhc---------cHHHHHHHHHh-hccchhhhhhhhhhhhhhccccchhh
Confidence 65554 22334677888888887777 67777778777 55578888888888888888888888
Q ss_pred HHHHHHHHHHcCCCCCchhHHHHhhhcCCCCCCccc
Q psy9209 292 KSLLRSIAQKRQPDESSSQPMECAVVLDPVPPSTRS 327 (349)
Q Consensus 292 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~ 327 (349)
|.++|.+.....+++-|...|.++..++|.+...|.
T Consensus 853 W~NlgvL~l~n~d~E~A~~af~~~qSLdP~nl~~Wl 888 (1238)
T KOG1127|consen 853 WLNLGVLVLENQDFEHAEPAFSSVQSLDPLNLVQWL 888 (1238)
T ss_pred eeccceeEEecccHHHhhHHHHhhhhcCchhhHHHH
Confidence 888888888888888888888888888887765543
No 77
>KOG1130|consensus
Probab=99.82 E-value=6e-19 Score=140.02 Aligned_cols=305 Identities=16% Similarity=0.158 Sum_probs=226.3
Q ss_pred hhhhHHhhCcHHHHHHHHHHHHHhccccCCCCCcchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhc---hHHHHHH
Q psy9209 2 RNKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEET---AEEAKSL 78 (349)
Q Consensus 2 ~a~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~---~~~~~~~ 78 (349)
.+.-+++.|++...+..|+.+++. .+.+-.....+|..+|++|+..++|++|+++-..-+.+... ...-...
T Consensus 23 EGERLck~gdcraGv~ff~aA~qv-----GTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKs 97 (639)
T KOG1130|consen 23 EGERLCKMGDCRAGVDFFKAALQV-----GTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKS 97 (639)
T ss_pred HHHHHHhccchhhhHHHHHHHHHh-----cchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccc
Confidence 355678899999999999999942 22222333357899999999999999999986654432111 0001112
Q ss_pred HHHHHHhcCCCcchHHHHHHHHHHHhhCcc------cHHHHHHHHHHHHhcCC--------------------hHHHHHH
Q psy9209 79 LRSIAQKRQPDESSSQAVLYFQRALKLNPN------YLGVWTLLGHEYMEMKN--------------------TNAAIQC 132 (349)
Q Consensus 79 l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~la~~~~~~~~--------------------~~~A~~~ 132 (349)
-++++..+.-.|.+++|+.++.+-+.+... ...+++++|.+|...|+ ++.|.++
T Consensus 98 sgNLGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~f 177 (639)
T KOG1130|consen 98 SGNLGNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKF 177 (639)
T ss_pred cccccchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHH
Confidence 345555666679999999999988766433 35688999999988775 3456666
Q ss_pred HHHHHHhCcc------cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC------ChHHHHHHHHHHHHhhCHHHHHHH
Q psy9209 133 YRQAIEINNL------DYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPN------DPRMLTALGEAFEKQEKISEAMKC 200 (349)
Q Consensus 133 ~~~a~~~~~~------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~A~~~ 200 (349)
|..-+++... ...++-+||..|+.+|+|+.|+..-+.-+.+... ...++.++|.++.-.|+++.|+++
T Consensus 178 y~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~eh 257 (639)
T KOG1130|consen 178 YMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEH 257 (639)
T ss_pred HHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHH
Confidence 6665555332 2456788999999999999999988777666332 236788999999999999999999
Q ss_pred HHHHHccc------cccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCCCCCcchHHHHHHHHHHHHHhCCHHHH
Q psy9209 201 YNKSRAIG------DADGKALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTA 274 (349)
Q Consensus 201 ~~~a~~~~------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 274 (349)
|+..+.+. ...+...+.+|..|.-..++++|+.++++-+.+... ..+......+++.||..+...|..++|
T Consensus 258 YK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqe---L~DriGe~RacwSLgna~~alg~h~kA 334 (639)
T KOG1130|consen 258 YKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQE---LEDRIGELRACWSLGNAFNALGEHRKA 334 (639)
T ss_pred HHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH---HHHhhhhHHHHHHHHHHHHhhhhHHHH
Confidence 99987652 224567789999999999999999999999888766 445556788999999999999999999
Q ss_pred HHHHHHHHccc-----CC-hHHHHHHHHHHHHHcCCCCCchhHHHH
Q psy9209 275 YKCAQKCLQHE-----ET-AEEAKSLLRSIAQKRQPDESSSQPMEC 314 (349)
Q Consensus 275 ~~~~~~a~~~~-----~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~ 314 (349)
+.+.++.+++. +. ...+..++.......|..+.-..-.+.
T Consensus 335 l~fae~hl~~s~ev~D~sgelTar~Nlsdl~~~lG~~ds~~~~te~ 380 (639)
T KOG1130|consen 335 LYFAELHLRSSLEVNDTSGELTARDNLSDLILELGQEDSLVDDTEL 380 (639)
T ss_pred HHHHHHHHHHHHHhCCcchhhhhhhhhHHHHHHhCCCcccCCcHHH
Confidence 99988887653 22 345667777777778877654433333
No 78
>PLN03077 Protein ECB2; Provisional
Probab=99.81 E-value=3.6e-17 Score=152.64 Aligned_cols=188 Identities=11% Similarity=0.055 Sum_probs=159.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCChHHHHHHHHHHHH
Q psy9209 113 WTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMV--RPNDPRMLTALGEAFEK 190 (349)
Q Consensus 113 ~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~ 190 (349)
...+...|.+.|++++|...|+.. +.+..+|..+...|...|+.++|+..|+++.+. .|+ ...+..+-..+..
T Consensus 527 ~naLi~~y~k~G~~~~A~~~f~~~----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd-~~T~~~ll~a~~~ 601 (857)
T PLN03077 527 PNALLDLYVRCGRMNYAWNQFNSH----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPD-EVTFISLLCACSR 601 (857)
T ss_pred chHHHHHHHHcCCHHHHHHHHHhc----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-cccHHHHHHHHhh
Confidence 345667888999999999999886 457889999999999999999999999998874 444 4456666677889
Q ss_pred hhCHHHHHHHHHHHHcc---ccccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCCCCCcchHHHHHHHHHHHHH
Q psy9209 191 QEKISEAMKCYNKSRAI---GDADGKALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLK 267 (349)
Q Consensus 191 ~~~~~~A~~~~~~a~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 267 (349)
.|.+++|..+|+.+.+. .| +...+..+..++.+.|++++|.+.++++ ...|+ ..+|..|-..+..
T Consensus 602 ~g~v~ea~~~f~~M~~~~gi~P-~~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~pd----------~~~~~aLl~ac~~ 669 (857)
T PLN03077 602 SGMVTQGLEYFHSMEEKYSITP-NLKHYACVVDLLGRAGKLTEAYNFINKM-PITPD----------PAVWGALLNACRI 669 (857)
T ss_pred cChHHHHHHHHHHHHHHhCCCC-chHHHHHHHHHHHhCCCHHHHHHHHHHC-CCCCC----------HHHHHHHHHHHHH
Confidence 99999999999998843 34 5678899999999999999999999876 34453 7788888888888
Q ss_pred hCCHHHHHHHHHHHHcccCChHHHHHHHHHHHHHcCCCCCchhHHHHhhh
Q psy9209 268 ANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDESSSQPMECAVV 317 (349)
Q Consensus 268 ~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 317 (349)
.|+.+.+....++++++.|++...+..++.+|...|++++|.+..+...+
T Consensus 670 ~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~ 719 (857)
T PLN03077 670 HRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRE 719 (857)
T ss_pred cCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999998877654
No 79
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.81 E-value=1.3e-17 Score=131.86 Aligned_cols=194 Identities=14% Similarity=0.051 Sum_probs=155.1
Q ss_pred CCcchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhchHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhCcccHH-
Q psy9209 33 PDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDESSSQAVLYFQRALKLNPNYLG- 111 (349)
Q Consensus 33 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~- 111 (349)
|........++.+|..++..|++++|+..+++++...|+++.....+..++.++...|++++|+..++++++..|+++.
T Consensus 27 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~ 106 (235)
T TIGR03302 27 PVEEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDA 106 (235)
T ss_pred CcccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCch
Confidence 3444455789999999999999999999999999999988765555666677788889999999999999999998775
Q ss_pred --HHHHHHHHHHhc--------CChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHH
Q psy9209 112 --VWTLLGHEYMEM--------KNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRML 181 (349)
Q Consensus 112 --~~~~la~~~~~~--------~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 181 (349)
+++.+|.++... |++++|++.|++++..+|++..++..+..+....+ . .....
T Consensus 107 ~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~----~-------------~~~~~ 169 (235)
T TIGR03302 107 DYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRN----R-------------LAGKE 169 (235)
T ss_pred HHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHH----H-------------HHHHH
Confidence 688999999876 78999999999999999988665543332211111 0 01223
Q ss_pred HHHHHHHHHhhCHHHHHHHHHHHHccccc---cHHHHHHHHHHHHhcCcHHHHHHHHHHHHhccc
Q psy9209 182 TALGEAFEKQEKISEAMKCYNKSRAIGDA---DGKALFKLAKLYDKLNETEAAADLFMEFVSKLD 243 (349)
Q Consensus 182 ~~l~~~~~~~~~~~~A~~~~~~a~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 243 (349)
..+|.++...|++.+|+..+++++...|+ .+.+++.+|.++...|++++|..+++......|
T Consensus 170 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 170 LYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 57888899999999999999999988665 457899999999999999999998888776655
No 80
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.81 E-value=2.4e-18 Score=123.77 Aligned_cols=126 Identities=13% Similarity=0.121 Sum_probs=103.5
Q ss_pred HHHHHHHHhhCcccHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC
Q psy9209 96 VLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRP 175 (349)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 175 (349)
...++++++++|++ +..+|.++...|++++|+..|++++..+|.+..++..+|.++...|++++|+..|++++.++|
T Consensus 13 ~~~~~~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p 89 (144)
T PRK15359 13 EDILKQLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDA 89 (144)
T ss_pred HHHHHHHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 35677888888774 556788888888888888888888888888888888888888888888888888888888888
Q ss_pred CChHHHHHHHHHHHHhhCHHHHHHHHHHHHccccccHHHHHHHHHHHHh
Q psy9209 176 NDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKLAKLYDK 224 (349)
Q Consensus 176 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~ 224 (349)
+++.+++.+|.++...|++++|+..|++++...|+++..+..++.+...
T Consensus 90 ~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~ 138 (144)
T PRK15359 90 SHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIM 138 (144)
T ss_pred CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence 8888888888888888888888888888888888888888777776544
No 81
>PLN03077 Protein ECB2; Provisional
Probab=99.80 E-value=9.9e-17 Score=149.75 Aligned_cols=295 Identities=14% Similarity=0.091 Sum_probs=191.7
Q ss_pred hhHHhhCcHHHHHHHHHHHHHhccccCCCCCcchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh--hhchHHHHHHHH-
Q psy9209 4 KLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQH--EETAEEAKSLLR- 80 (349)
Q Consensus 4 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~--~~~~~~~~~~l~- 80 (349)
..|.+.|++++|..+|+++. .++. .+|..+...|.+.|++++|+..|+++... .|+.......+.
T Consensus 331 ~~y~k~g~~~~A~~vf~~m~--------~~d~----~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a 398 (857)
T PLN03077 331 QMYLSLGSWGEAEKVFSRME--------TKDA----VSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSA 398 (857)
T ss_pred HHHHhcCCHHHHHHHHhhCC--------CCCe----eeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHH
Confidence 56778888888888887643 1111 35888888888888888888888877543 354332221111
Q ss_pred ------------------------------HHHHhcCCCcchHHHHHHHHHHHhhCcccHHHHHHHHHHHHhcCChHHHH
Q psy9209 81 ------------------------------SIAQKRQPDESSSQAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAI 130 (349)
Q Consensus 81 ------------------------------~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 130 (349)
.+...|.+.|++++|.+.|++..+ .+...|..+...|...|++++|+
T Consensus 399 ~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~---~d~vs~~~mi~~~~~~g~~~eA~ 475 (857)
T PLN03077 399 CACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE---KDVISWTSIIAGLRLNNRCFEAL 475 (857)
T ss_pred HhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC---CCeeeHHHHHHHHHHCCCHHHHH
Confidence 122233444555555555544322 22334555555555556666666
Q ss_pred HHHHHHHHh-CcccHH----------------------------------HHHHHHHHHHHhCCHHHHHHHHHHHHhcCC
Q psy9209 131 QCYRQAIEI-NNLDYR----------------------------------AWYGLGQTYEILRLPYYGLYYYKQAHMVRP 175 (349)
Q Consensus 131 ~~~~~a~~~-~~~~~~----------------------------------~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 175 (349)
..|+++... .|+... +...+...|.+.|+.++|...|+.. +
T Consensus 476 ~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~----~ 551 (857)
T PLN03077 476 IFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH----E 551 (857)
T ss_pred HHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc----C
Confidence 666555432 222110 1112334555666666666666654 4
Q ss_pred CChHHHHHHHHHHHHhhCHHHHHHHHHHHHcc--ccccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCCCCCcc
Q psy9209 176 NDPRMLTALGEAFEKQEKISEAMKCYNKSRAI--GDADGKALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTC 253 (349)
Q Consensus 176 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 253 (349)
.+...|..+...|...|+.++|+..|+++.+. .| +...+..+...+.+.|.+++|..+|+.+.+..+- ..
T Consensus 552 ~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~P-d~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi-------~P 623 (857)
T PLN03077 552 KDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNP-DEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSI-------TP 623 (857)
T ss_pred CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-CcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCC-------CC
Confidence 45667888888888888888888888887764 44 4455666666788888888888888888743221 01
Q ss_pred hHHHHHHHHHHHHHhCCHHHHHHHHHHHHcccCChHHHHHHHHHHHHHcCCCCCchhHHHHhhhcCCCCCCccc
Q psy9209 254 GFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDESSSQPMECAVVLDPVPPSTRS 327 (349)
Q Consensus 254 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~ 327 (349)
....|..+..++.+.|++++|.+.+++. ...|+ ...|..+-..+...|+.+.+....+++++++|++.....
T Consensus 624 ~~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~pd-~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ 695 (857)
T PLN03077 624 NLKHYACVVDLLGRAGKLTEAYNFINKM-PITPD-PAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYI 695 (857)
T ss_pred chHHHHHHHHHHHhCCCHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHH
Confidence 4678889999999999999999999885 45565 455655555677789999999999999999999876543
No 82
>KOG1127|consensus
Probab=99.79 E-value=1.9e-17 Score=144.48 Aligned_cols=266 Identities=13% Similarity=0.012 Sum_probs=218.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhchHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhCcccHHHHHHHHHH
Q psy9209 40 FAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDESSSQAVLYFQRALKLNPNYLGVWTLLGHE 119 (349)
Q Consensus 40 ~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 119 (349)
..|..+|-.|...+++..|+..|+.+++.+|.+...|..++ .+|...|.+..|++.|.++..++|.+.-+.+..+.+
T Consensus 563 ~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLG---eAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ 639 (1238)
T KOG1127|consen 563 ENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLG---EAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVM 639 (1238)
T ss_pred hhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHH---HHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHH
Confidence 45777999999999999999999999999999998876665 557778999999999999999999999999999999
Q ss_pred HHhcCChHHHHHHHHHHHHhCccc-------HHHHHHHHHHHHHhCCHHHHHHHHHHHHhc-------------------
Q psy9209 120 YMEMKNTNAAIQCYRQAIEINNLD-------YRAWYGLGQTYEILRLPYYGLYYYKQAHMV------------------- 173 (349)
Q Consensus 120 ~~~~~~~~~A~~~~~~a~~~~~~~-------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------------------- 173 (349)
....|.|.+|+..+...+...... .+++...+..+...|=..+|..+++++++.
T Consensus 640 ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~a 719 (1238)
T KOG1127|consen 640 ECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVA 719 (1238)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 999999999999999988754333 334444444444445455555555554443
Q ss_pred ----------CC-----------------------------------------CChHHHHHHHHHHHH--------hhCH
Q psy9209 174 ----------RP-----------------------------------------NDPRMLTALGEAFEK--------QEKI 194 (349)
Q Consensus 174 ----------~~-----------------------------------------~~~~~~~~l~~~~~~--------~~~~ 194 (349)
.| ..+..|+++|..|.. +.+.
T Consensus 720 sdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr~f~~l~et~~~~ 799 (1238)
T KOG1127|consen 720 SDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLRYFLLLGETMKDA 799 (1238)
T ss_pred hHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHHHHHHHcCCcchhH
Confidence 01 113457788877765 2334
Q ss_pred HHHHHHHHHHHccccccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCCCCCcchHHHHHHHHHHHHHhCCHHHH
Q psy9209 195 SEAMKCYNKSRAIGDADGKALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTA 274 (349)
Q Consensus 195 ~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 274 (349)
..|+.++.+++++..++...|..||.+ ...|++.-|...|-+.+...|. ....|.++|.++.+..+++-|
T Consensus 800 ~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~---------~~~~W~NlgvL~l~n~d~E~A 869 (1238)
T KOG1127|consen 800 CTAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPT---------CHCQWLNLGVLVLENQDFEHA 869 (1238)
T ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhcccc---------chhheeccceeEEecccHHHh
Confidence 589999999999999999999999988 6669999999999999999998 799999999999999999999
Q ss_pred HHHHHHHHcccCChHHHHHHHHHHHHHcCCCCCchhHHHHhhhc
Q psy9209 275 YKCAQKCLQHEETAEEAKSLLRSIAQKRQPDESSSQPMECAVVL 318 (349)
Q Consensus 275 ~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 318 (349)
...|.++..++|.+...|...+.+....|+.-++...|.-..++
T Consensus 870 ~~af~~~qSLdP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el 913 (1238)
T KOG1127|consen 870 EPAFSSVQSLDPLNLVQWLGEALIPEAVGRIIERLILFAHSDEL 913 (1238)
T ss_pred hHHHHhhhhcCchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHh
Confidence 99999999999999999999999999999887777777664333
No 83
>KOG1156|consensus
Probab=99.79 E-value=1.9e-16 Score=132.50 Aligned_cols=249 Identities=14% Similarity=0.078 Sum_probs=215.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhchHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhCcccHHHHHHHHHH
Q psy9209 40 FAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDESSSQAVLYFQRALKLNPNYLGVWTLLGHE 119 (349)
Q Consensus 40 ~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 119 (349)
..++..+.-.+..++|...+...+.+++..|++++.. +..|..+...|+-++|..+.+.++..++....+|..+|.+
T Consensus 8 ~~lF~~~lk~yE~kQYkkgLK~~~~iL~k~~eHgesl---AmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~ 84 (700)
T KOG1156|consen 8 NALFRRALKCYETKQYKKGLKLIKQILKKFPEHGESL---AMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLL 84 (700)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHhCCccchhH---HhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHH
Confidence 4577777778899999999999999999999999984 4445556667999999999999999999999999999999
Q ss_pred HHhcCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhCHHHHHH
Q psy9209 120 YMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMK 199 (349)
Q Consensus 120 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 199 (349)
+....+|++|+++|+.|+.+.|++...|..++.+..++++++.....-.+.++..|.....|...+..+...|++..|..
T Consensus 85 ~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~ 164 (700)
T KOG1156|consen 85 QRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALE 164 (700)
T ss_pred HhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHccc---ccc-----HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCCCCCcchHHHHHHHHHHHHHhCCH
Q psy9209 200 CYNKSRAIG---DAD-----GKALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNL 271 (349)
Q Consensus 200 ~~~~a~~~~---~~~-----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 271 (349)
.++...+.. |+. .........+....|.+++|.+.+..--...-+ ........+.++.+.+++
T Consensus 165 il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~D---------kla~~e~ka~l~~kl~~l 235 (700)
T KOG1156|consen 165 ILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVD---------KLAFEETKADLLMKLGQL 235 (700)
T ss_pred HHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHH---------HHHHhhhHHHHHHHHhhH
Confidence 888777653 322 334455566777888888888777654333222 455566789999999999
Q ss_pred HHHHHHHHHHHcccCChHHHHHHHHHHHH
Q psy9209 272 DTAYKCAQKCLQHEETAEEAKSLLRSIAQ 300 (349)
Q Consensus 272 ~~A~~~~~~a~~~~~~~~~~~~~l~~~~~ 300 (349)
++|...|...+..+|++...+..+-.++.
T Consensus 236 EeA~~~y~~Ll~rnPdn~~Yy~~l~~~lg 264 (700)
T KOG1156|consen 236 EEAVKVYRRLLERNPDNLDYYEGLEKALG 264 (700)
T ss_pred HhHHHHHHHHHhhCchhHHHHHHHHHHHH
Confidence 99999999999999999988888877775
No 84
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.79 E-value=1.3e-16 Score=134.47 Aligned_cols=272 Identities=12% Similarity=-0.011 Sum_probs=195.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhchHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhCcccHHHHHHHHHH
Q psy9209 40 FAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDESSSQAVLYFQRALKLNPNYLGVWTLLGHE 119 (349)
Q Consensus 40 ~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 119 (349)
.++..+|..+...|+.+.+...+.++.+..|.+..........+..+...|++++|...++++++.+|++..++.. +..
T Consensus 7 ~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~-~~~ 85 (355)
T cd05804 7 LGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKL-HLG 85 (355)
T ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHH-hHH
Confidence 5789999999999999999999999888777554433333334445556799999999999999999999877765 555
Q ss_pred HHhcCCh----HHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhCHH
Q psy9209 120 YMEMKNT----NAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKIS 195 (349)
Q Consensus 120 ~~~~~~~----~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 195 (349)
+...|++ ..+...+.......|.....+..+|.++...|++++|+..++++++..|+++.++..+|.++...|+++
T Consensus 86 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~ 165 (355)
T cd05804 86 AFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFK 165 (355)
T ss_pred HHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHH
Confidence 5555544 444444444334566677788889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHccccccH----HHHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCCCCCcchHHH--HHHHHHHHHHhC
Q psy9209 196 EAMKCYNKSRAIGDADG----KALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFA--FKYLANHHLKAN 269 (349)
Q Consensus 196 ~A~~~~~~a~~~~~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g 269 (349)
+|+.++++++...|..+ ..+..+|.++...|++++|+..+++++...|.. ...... ...+...+...|
T Consensus 166 eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~------~~~~~~~~~~~~l~~~~~~g 239 (355)
T cd05804 166 EGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAES------DPALDLLDAASLLWRLELAG 239 (355)
T ss_pred HHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCC------ChHHHHhhHHHHHHHHHhcC
Confidence 99999999999876433 346689999999999999999999997665520 001111 112223333344
Q ss_pred CHHHHHHH--H-HHHHcccCC--hHHHHHHHHHHHHHcCCCCCchhHHHHhhhc
Q psy9209 270 NLDTAYKC--A-QKCLQHEET--AEEAKSLLRSIAQKRQPDESSSQPMECAVVL 318 (349)
Q Consensus 270 ~~~~A~~~--~-~~a~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 318 (349)
....+..+ . .......|. ........+.+....|+.+.|...++.....
T Consensus 240 ~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~ 293 (355)
T cd05804 240 HVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGR 293 (355)
T ss_pred CCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 33333332 1 111111111 2222235777888889999998888876543
No 85
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.79 E-value=1.4e-17 Score=119.85 Aligned_cols=127 Identities=11% Similarity=0.073 Sum_probs=119.0
Q ss_pred HHHHHHHHHhCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhCHHHHHHHHHHHHcccc
Q psy9209 130 IQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGD 209 (349)
Q Consensus 130 ~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~ 209 (349)
...++++++++|++ +..+|.++...|++++|+..|++++..+|.+..++..+|.++...|++++|+..|++++..+|
T Consensus 13 ~~~~~~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p 89 (144)
T PRK15359 13 EDILKQLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDA 89 (144)
T ss_pred HHHHHHHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 46789999999875 667899999999999999999999999999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCCCCCcchHHHHHHHHHHHHHh
Q psy9209 210 ADGKALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKA 268 (349)
Q Consensus 210 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 268 (349)
+++.+++++|.++...|++++|+..|++++...|+ ++..+..+|.+....
T Consensus 90 ~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~---------~~~~~~~~~~~~~~l 139 (144)
T PRK15359 90 SHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYA---------DASWSEIRQNAQIMV 139 (144)
T ss_pred CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---------ChHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999 788888888776543
No 86
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.78 E-value=1.1e-15 Score=130.84 Aligned_cols=272 Identities=15% Similarity=0.097 Sum_probs=200.6
Q ss_pred hhhhHHhhCcHHHHHHHHHHHHHhccccCCCCCcchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhchHHHHHHHHH
Q psy9209 2 RNKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRS 81 (349)
Q Consensus 2 ~a~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~ 81 (349)
++.++...|++++|+..+++....+.+.. ..+...|.++...|++++|...|...+..+|++...+..+..
T Consensus 10 ~~~il~e~g~~~~AL~~L~~~~~~I~Dk~---------~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~ 80 (517)
T PF12569_consen 10 KNSILEEAGDYEEALEHLEKNEKQILDKL---------AVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEE 80 (517)
T ss_pred HHHHHHHCCCHHHHHHHHHhhhhhCCCHH---------HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHH
Confidence 46788899999999999977664332222 578899999999999999999999999999999888766655
Q ss_pred HHHhcC--CCcchHHHHHHHHHHHhhCccc--------------------------------HHHHHHHHHHHHhcCChH
Q psy9209 82 IAQKRQ--PDESSSQAVLYFQRALKLNPNY--------------------------------LGVWTLLGHEYMEMKNTN 127 (349)
Q Consensus 82 ~~~~~~--~~~~~~~A~~~~~~~~~~~~~~--------------------------------~~~~~~la~~~~~~~~~~ 127 (349)
...... ...+.+.-...|++.....|.. |.....+-.+|.......
T Consensus 81 ~~g~~~~~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~ 160 (517)
T PF12569_consen 81 ALGLQLQLSDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAA 160 (517)
T ss_pred HHhhhcccccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHH
Confidence 432221 1235667777787776665541 122223333333222222
Q ss_pred HHHHHHHHHHHh---------------Cccc--HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Q psy9209 128 AAIQCYRQAIEI---------------NNLD--YRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEK 190 (349)
Q Consensus 128 ~A~~~~~~a~~~---------------~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 190 (349)
-...++...... .|.. ..+++.+++.|...|++++|+.+++++++..|..++.+...|.++..
T Consensus 161 ~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh 240 (517)
T PF12569_consen 161 IIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKH 240 (517)
T ss_pred HHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 222222222211 0111 34668899999999999999999999999999999999999999999
Q ss_pred hhCHHHHHHHHHHHHccccccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCCCCC--cchHHHHHHHHHHHHHh
Q psy9209 191 QEKISEAMKCYNKSRAIGDADGKALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDK--TCGFFAFKYLANHHLKA 268 (349)
Q Consensus 191 ~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~ 268 (349)
.|++.+|...++.+..+++.+-.+....+..+.+.|+.++|...+......+.+. ..+- ....+.....|.+|.+.
T Consensus 241 ~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~--~~~L~~mQc~Wf~~e~a~a~~r~ 318 (517)
T PF12569_consen 241 AGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDP--LSNLNDMQCMWFETECAEAYLRQ 318 (517)
T ss_pred CCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCc--ccCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999987765543210 1111 12244445679999999
Q ss_pred CCHHHHHHHHHHHHcc
Q psy9209 269 NNLDTAYKCAQKCLQH 284 (349)
Q Consensus 269 g~~~~A~~~~~~a~~~ 284 (349)
|++..|++.|..+.+.
T Consensus 319 ~~~~~ALk~~~~v~k~ 334 (517)
T PF12569_consen 319 GDYGLALKRFHAVLKH 334 (517)
T ss_pred hhHHHHHHHHHHHHHH
Confidence 9999999999888765
No 87
>KOG3060|consensus
Probab=99.78 E-value=1.9e-15 Score=112.69 Aligned_cols=206 Identities=13% Similarity=0.023 Sum_probs=170.4
Q ss_pred cCCHHHHHHHHHHHhhhhhc---hHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhCcccHHHHHHHHHHHHhcCChHH
Q psy9209 52 ANNLDTAYKCAQKCLQHEET---AEEAKSLLRSIAQKRQPDESSSQAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNA 128 (349)
Q Consensus 52 ~~~~~~A~~~~~~~l~~~~~---~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 128 (349)
..+.++-++....++...+. -++.|..+-.+..+....|+.+-|..++++.....|....+....|..+...|++++
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~ 104 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKE 104 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhh
Confidence 34556666666666543332 234566666666666667899999999999888889999999999999999999999
Q ss_pred HHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhCHHHHHHHHHHHHccc
Q psy9209 129 AIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIG 208 (349)
Q Consensus 129 A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 208 (349)
|+++|+..++-+|.+...+-..-.+...+|+.-+|++.+..-++..+.+.++|..++.+|...|+|++|.-|+++++-+.
T Consensus 105 A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~ 184 (289)
T KOG3060|consen 105 AIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQ 184 (289)
T ss_pred HHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcC
Confidence 99999999999999988888888888889999999999999999999999999999999999999999999999999999
Q ss_pred cccHHHHHHHHHHHHhcC---cHHHHHHHHHHHHhcccccCCCCCCcchHHHHHHHHHHHH
Q psy9209 209 DADGKALFKLAKLYDKLN---ETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHL 266 (349)
Q Consensus 209 ~~~~~~~~~l~~~~~~~~---~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 266 (349)
|.++..+..+|.+++.+| +..-|.++|.++++++|. +..+++.+-.+..
T Consensus 185 P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~---------~~ral~GI~lc~~ 236 (289)
T KOG3060|consen 185 PFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPK---------NLRALFGIYLCGS 236 (289)
T ss_pred CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChH---------hHHHHHHHHHHHH
Confidence 999999999999988776 456788999999999886 5666666554443
No 88
>KOG1915|consensus
Probab=99.76 E-value=2.1e-14 Score=116.43 Aligned_cols=290 Identities=14% Similarity=0.080 Sum_probs=181.8
Q ss_pred HhhCcHHHHHHHHHHHHHhccccCCCCCcchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhchHHHHHHHHHHHHhc
Q psy9209 7 DKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKR 86 (349)
Q Consensus 7 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~ 86 (349)
..++++..|..+|++++. .+..+. ..|...+.+-++..+...|..++.+++.+-|.-...|+-+..+-..+
T Consensus 84 esq~e~~RARSv~ERALd------vd~r~i---tLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~L 154 (677)
T KOG1915|consen 84 ESQKEIQRARSVFERALD------VDYRNI---TLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEML 154 (677)
T ss_pred HhHHHHHHHHHHHHHHHh------cccccc---hHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHh
Confidence 456788888899998883 222221 36888888888888888888888888888887777666555554443
Q ss_pred CCCcchHHHHHHHHHHHhhCcc--------------------------------cHHHHHHHHHHHHhcCChHHHHHHHH
Q psy9209 87 QPDESSSQAVLYFQRALKLNPN--------------------------------YLGVWTLLGHEYMEMKNTNAAIQCYR 134 (349)
Q Consensus 87 ~~~~~~~~A~~~~~~~~~~~~~--------------------------------~~~~~~~la~~~~~~~~~~~A~~~~~ 134 (349)
|+..-|.+.|++-++..|+ ....|...+..-...|+..-|...|+
T Consensus 155 ---gNi~gaRqiferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~Vye 231 (677)
T KOG1915|consen 155 ---GNIAGARQIFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYE 231 (677)
T ss_pred ---cccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 6777777777776666664 13345555666666777777777777
Q ss_pred HHHHhCccc---HHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--------------------------------------
Q psy9209 135 QAIEINNLD---YRAWYGLGQTYEILRLPYYGLYYYKQAHMV-------------------------------------- 173 (349)
Q Consensus 135 ~a~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-------------------------------------- 173 (349)
+|++.-.++ .......|..-..++.++.|..+|+-++..
T Consensus 232 rAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qY 311 (677)
T KOG1915|consen 232 RAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQY 311 (677)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHH
Confidence 776643222 112222233333333344443333333332
Q ss_pred ------CCCChHHHHHHHHHHHHhhCHHHHHHHHHHHHcccccc------------------------------------
Q psy9209 174 ------RPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDAD------------------------------------ 211 (349)
Q Consensus 174 ------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~------------------------------------ 211 (349)
+|.+-++|+.+-.+-...|+.+.-.+.|++|+...|..
T Consensus 312 E~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~ 391 (677)
T KOG1915|consen 312 EKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQA 391 (677)
T ss_pred HHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 45555566666655556666666666666666554431
Q ss_pred ------------HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCCCCCcchHHHHHHHHHHHHHhCCHHHHHHHHH
Q psy9209 212 ------------GKALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQ 279 (349)
Q Consensus 212 ------------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 279 (349)
+.+|...|....++.+...|.+.+-.++...|. ...+.....+-.+.++++.....|+
T Consensus 392 ~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK----------~KlFk~YIelElqL~efDRcRkLYE 461 (677)
T KOG1915|consen 392 CLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPK----------DKLFKGYIELELQLREFDRCRKLYE 461 (677)
T ss_pred HHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCc----------hhHHHHHHHHHHHHhhHHHHHHHHH
Confidence 334444455555555555555555555555554 4555555566667777888888888
Q ss_pred HHHcccCChHHHHHHHHHHHHHcCCCCCchhHHHHhhhc
Q psy9209 280 KCLQHEETAEEAKSLLRSIAQKRQPDESSSQPMECAVVL 318 (349)
Q Consensus 280 ~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 318 (349)
+.++..|.+-.+|...|.+...+|+.+.|...|+-|+..
T Consensus 462 kfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~q 500 (677)
T KOG1915|consen 462 KFLEFSPENCYAWSKYAELETSLGDTDRARAIFELAISQ 500 (677)
T ss_pred HHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcC
Confidence 888888888888888888888888887777777776654
No 89
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.76 E-value=2.2e-16 Score=119.74 Aligned_cols=155 Identities=15% Similarity=0.176 Sum_probs=126.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhhhhchHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhCcccHHHHHHHHHHHHhcC
Q psy9209 45 LANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDESSSQAVLYFQRALKLNPNYLGVWTLLGHEYMEMK 124 (349)
Q Consensus 45 l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~ 124 (349)
-+-.|+..|+++......++.. +|.. .+...++.++++..++++++.+|+++..|..+|.++...|
T Consensus 22 ~~~~Y~~~g~~~~v~~~~~~~~--~~~~------------~~~~~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g 87 (198)
T PRK10370 22 CVGSYLLSPKWQAVRAEYQRLA--DPLH------------QFASQQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRN 87 (198)
T ss_pred HHHHHHHcchHHHHHHHHHHHh--Cccc------------cccCchhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCC
Confidence 3456778888877644432211 1110 1112477889999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHhCcccHHHHHHHHHHH-HHhCC--HHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhCHHHHHHHH
Q psy9209 125 NTNAAIQCYRQAIEINNLDYRAWYGLGQTY-EILRL--PYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCY 201 (349)
Q Consensus 125 ~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~-~~~~~--~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 201 (349)
++++|+..|+++++++|+++.++..+|.++ ...|+ +++|...++++++.+|+++.++..+|..+...|++++|+.++
T Consensus 88 ~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~ 167 (198)
T PRK10370 88 DYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELW 167 (198)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHH
Confidence 999999999999999999999999999875 67677 589999999999999999999999999999999999999999
Q ss_pred HHHHccccccHH
Q psy9209 202 NKSRAIGDADGK 213 (349)
Q Consensus 202 ~~a~~~~~~~~~ 213 (349)
+++++..|.+..
T Consensus 168 ~~aL~l~~~~~~ 179 (198)
T PRK10370 168 QKVLDLNSPRVN 179 (198)
T ss_pred HHHHhhCCCCcc
Confidence 999998776543
No 90
>KOG1130|consensus
Probab=99.75 E-value=1.2e-17 Score=132.71 Aligned_cols=274 Identities=14% Similarity=0.079 Sum_probs=215.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhhhhchHHHH-HHHHHHHHhcCCCcchHHHHHHHHHHHhhC------cccHHHHH
Q psy9209 42 FKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAK-SLLRSIAQKRQPDESSSQAVLYFQRALKLN------PNYLGVWT 114 (349)
Q Consensus 42 ~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~-~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~------~~~~~~~~ 114 (349)
+..-|.-+++.|++...+.+|+.+++...++.... .++..++.+|...++|++|+++..--+.+. -..+.+.-
T Consensus 20 LalEGERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssg 99 (639)
T KOG1130|consen 20 LALEGERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSG 99 (639)
T ss_pred HHHHHHHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccc
Confidence 34457888999999999999999999876665443 345677788888899999999865433321 12234557
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHhCcc------cHHHHHHHHHHHHHhCC--------------------HHHHHHHHH
Q psy9209 115 LLGHEYMEMKNTNAAIQCYRQAIEINNL------DYRAWYGLGQTYEILRL--------------------PYYGLYYYK 168 (349)
Q Consensus 115 ~la~~~~~~~~~~~A~~~~~~a~~~~~~------~~~~~~~l~~~~~~~~~--------------------~~~A~~~~~ 168 (349)
++|.++..+|.|++|+.+..+-+.+... ...+++++|.+|...|+ ++.|.++|.
T Consensus 100 NLGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~ 179 (639)
T KOG1130|consen 100 NLGNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYM 179 (639)
T ss_pred cccchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHH
Confidence 8999999999999999999888775332 36789999999987765 244566666
Q ss_pred HHHhcCCC------ChHHHHHHHHHHHHhhCHHHHHHHHHHHHccccc------cHHHHHHHHHHHHhcCcHHHHHHHHH
Q psy9209 169 QAHMVRPN------DPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDA------DGKALFKLAKLYDKLNETEAAADLFM 236 (349)
Q Consensus 169 ~~~~~~~~------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~------~~~~~~~l~~~~~~~~~~~~A~~~~~ 236 (349)
.-+++... ...++-++|..|+-+|+|+.|+..-+.-+.+... ...++.++|.++.-.|+++.|+++|+
T Consensus 180 eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK 259 (639)
T KOG1130|consen 180 ENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYK 259 (639)
T ss_pred HHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHH
Confidence 65554322 2357788999999999999999998887776432 34588899999999999999999999
Q ss_pred HHHhcccccCCCCCCcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHcccC------ChHHHHHHHHHHHHHcCCCCCchh
Q psy9209 237 EFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEE------TAEEAKSLLRSIAQKRQPDESSSQ 310 (349)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~------~~~~~~~~l~~~~~~~~~~~~A~~ 310 (349)
..+.+... ..+....+...+.||..|.-..++++|+.++++-+.+.. ....+...||..+-..|..++|+.
T Consensus 260 ~tl~LAie---lg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~ 336 (639)
T KOG1130|consen 260 LTLNLAIE---LGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALY 336 (639)
T ss_pred HHHHHHHH---hcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHH
Confidence 99887766 455666788999999999999999999999999877643 345677889999999999999999
Q ss_pred HHHHhhhc
Q psy9209 311 PMECAVVL 318 (349)
Q Consensus 311 ~~~~a~~~ 318 (349)
+.++.+++
T Consensus 337 fae~hl~~ 344 (639)
T KOG1130|consen 337 FAELHLRS 344 (639)
T ss_pred HHHHHHHH
Confidence 88887654
No 91
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.75 E-value=3.2e-16 Score=118.86 Aligned_cols=151 Identities=17% Similarity=0.187 Sum_probs=130.6
Q ss_pred HHhcCCCcchHHHHHHHHHHHhhCcccHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHHH
Q psy9209 83 AQKRQPDESSSQAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYY 162 (349)
Q Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~ 162 (349)
...|...|+++......++.. +|.. -+...++.++++..++++++.+|++...|..+|.+|...|++++
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~--~~~~---------~~~~~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~ 91 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLA--DPLH---------QFASQQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDN 91 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHh--Cccc---------cccCchhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHH
Confidence 345666788877655443221 1211 12236778999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCChHHHHHHHHHH-HHhhC--HHHHHHHHHHHHccccccHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Q psy9209 163 GLYYYKQAHMVRPNDPRMLTALGEAF-EKQEK--ISEAMKCYNKSRAIGDADGKALFKLAKLYDKLNETEAAADLFMEFV 239 (349)
Q Consensus 163 A~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~--~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 239 (349)
|+..|++++++.|+++.++..+|.++ ...|+ +++|...++++++.+|+++.+++.+|..+...|++++|+..+++++
T Consensus 92 A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL 171 (198)
T PRK10370 92 ALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVL 171 (198)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 99999999999999999999999975 67787 5999999999999999999999999999999999999999999999
Q ss_pred hcccc
Q psy9209 240 SKLDT 244 (349)
Q Consensus 240 ~~~~~ 244 (349)
+..|.
T Consensus 172 ~l~~~ 176 (198)
T PRK10370 172 DLNSP 176 (198)
T ss_pred hhCCC
Confidence 99886
No 92
>KOG3060|consensus
Probab=99.74 E-value=4.8e-15 Score=110.58 Aligned_cols=185 Identities=18% Similarity=0.066 Sum_probs=167.8
Q ss_pred hCcccHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHH
Q psy9209 105 LNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTAL 184 (349)
Q Consensus 105 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 184 (349)
..++....+-....+....|+.+-|..++++.....|.+..+....|..+...|++++|+++|+..++-+|.+..++...
T Consensus 47 ~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRK 126 (289)
T KOG3060|consen 47 LGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRK 126 (289)
T ss_pred cCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHH
Confidence 34444556666777788999999999999999998899999999999999999999999999999999999999999988
Q ss_pred HHHHHHhhCHHHHHHHHHHHHccccccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCCCCCcchHHHHHHHHHH
Q psy9209 185 GEAFEKQEKISEAMKCYNKSRAIGDADGKALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANH 264 (349)
Q Consensus 185 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 264 (349)
--+...+|+.-+|++.+...++..+.+.++|..++.+|...|++++|.-++++++-+.|. .+..+..+|.+
T Consensus 127 lAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~---------n~l~f~rlae~ 197 (289)
T KOG3060|consen 127 LAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPF---------NPLYFQRLAEV 197 (289)
T ss_pred HHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCC---------cHHHHHHHHHH
Confidence 888999999999999999999999999999999999999999999999999999999998 79999999999
Q ss_pred HHHhC---CHHHHHHHHHHHHcccCChHHHHHHHHHH
Q psy9209 265 HLKAN---NLDTAYKCAQKCLQHEETAEEAKSLLRSI 298 (349)
Q Consensus 265 ~~~~g---~~~~A~~~~~~a~~~~~~~~~~~~~l~~~ 298 (349)
++-+| +.+-|.++|.++++++|.+..+++.+-.+
T Consensus 198 ~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~GI~lc 234 (289)
T KOG3060|consen 198 LYTQGGAENLELARKYYERALKLNPKNLRALFGIYLC 234 (289)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHhChHhHHHHHHHHHH
Confidence 99887 78889999999999999777776655433
No 93
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.73 E-value=1.3e-15 Score=114.54 Aligned_cols=177 Identities=14% Similarity=0.073 Sum_probs=132.5
Q ss_pred HHHHHHHHHHhhCcccHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Q psy9209 94 QAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMV 173 (349)
Q Consensus 94 ~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 173 (349)
.+...+-+....+|++..+ ..++..+...|+-+.+..+..++....|.+..+...+|......|++..|+..+.++...
T Consensus 51 ~a~~al~~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l 129 (257)
T COG5010 51 GAAAALGAAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARL 129 (257)
T ss_pred HHHHHHHHHHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhcc
Confidence 3555555556667777777 777777777777777777777777777777777777777777777777777777777777
Q ss_pred CCCChHHHHHHHHHHHHhhCHHHHHHHHHHHHccccccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCCCCCcc
Q psy9209 174 RPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTC 253 (349)
Q Consensus 174 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 253 (349)
.|+++++|..+|.+|.+.|++++|...|.+++++.|.++.+..++|..+.-.|+++.|..++..+....+.
T Consensus 130 ~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~a--------- 200 (257)
T COG5010 130 APTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAA--------- 200 (257)
T ss_pred CCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCC---------
Confidence 77777777777777777777777777777777777777777777777777777777777777777766555
Q ss_pred hHHHHHHHHHHHHHhCCHHHHHHHHHH
Q psy9209 254 GFFAFKYLANHHLKANNLDTAYKCAQK 280 (349)
Q Consensus 254 ~~~~~~~l~~~~~~~g~~~~A~~~~~~ 280 (349)
...+..+|+.+...+|++++|.....+
T Consensus 201 d~~v~~NLAl~~~~~g~~~~A~~i~~~ 227 (257)
T COG5010 201 DSRVRQNLALVVGLQGDFREAEDIAVQ 227 (257)
T ss_pred chHHHHHHHHHHhhcCChHHHHhhccc
Confidence 567777777777777777777766544
No 94
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.73 E-value=1.1e-15 Score=114.98 Aligned_cols=178 Identities=14% Similarity=0.084 Sum_probs=167.5
Q ss_pred HHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhCHHHHHHHHHHHHc
Q psy9209 127 NAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRA 206 (349)
Q Consensus 127 ~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 206 (349)
..+...+-+....+|++..+ .+++..+...|+-+.+..+..++...+|.+...+..+|......|++.+|+..++++..
T Consensus 50 ~~a~~al~~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~ 128 (257)
T COG5010 50 QGAAAALGAAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR 128 (257)
T ss_pred hHHHHHHHHHHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhc
Confidence 34666777777889999999 99999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCCCCCcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHcccC
Q psy9209 207 IGDADGKALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEE 286 (349)
Q Consensus 207 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~ 286 (349)
..|+++.+|..+|.+|.+.|++++|...|.+++++.|. .+.+..++|..+.-.|+++.|..++..+....+
T Consensus 129 l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~---------~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ 199 (257)
T COG5010 129 LAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPN---------EPSIANNLGMSLLLRGDLEDAETLLLPAYLSPA 199 (257)
T ss_pred cCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccC---------CchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999999 899999999999999999999999999999988
Q ss_pred ChHHHHHHHHHHHHHcCCCCCchhHHHH
Q psy9209 287 TAEEAKSLLRSIAQKRQPDESSSQPMEC 314 (349)
Q Consensus 287 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 314 (349)
.+..+..+++.+...+|++++|...-.+
T Consensus 200 ad~~v~~NLAl~~~~~g~~~~A~~i~~~ 227 (257)
T COG5010 200 ADSRVRQNLALVVGLQGDFREAEDIAVQ 227 (257)
T ss_pred CchHHHHHHHHHHhhcCChHHHHhhccc
Confidence 8999999999999999999988776544
No 95
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.72 E-value=1.2e-13 Score=109.93 Aligned_cols=261 Identities=16% Similarity=0.065 Sum_probs=199.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhhhhchHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhCcc-cHHHHHHHHHHH
Q psy9209 42 FKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDESSSQAVLYFQRALKLNPN-YLGVWTLLGHEY 120 (349)
Q Consensus 42 ~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~ 120 (349)
...-|..-+..|+|.+|.....+.-+..+.....+.. .+.+-...|+.+.+-.++.++-+..++ ...+...++.+.
T Consensus 87 ~~~egl~~l~eG~~~qAEkl~~rnae~~e~p~l~~l~---aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarll 163 (400)
T COG3071 87 ALNEGLLKLFEGDFQQAEKLLRRNAEHGEQPVLAYLL---AAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLL 163 (400)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHhhhcCcchHHHHHH---HHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHH
Confidence 3445556667899999998888876665554443322 233444569999999999999888444 345678888999
Q ss_pred HhcCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC--------------------------
Q psy9209 121 MEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVR-------------------------- 174 (349)
Q Consensus 121 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-------------------------- 174 (349)
...|+++.|.....++++..|.++.+......+|...|++.+...++.+.-+..
T Consensus 164 l~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~ 243 (400)
T COG3071 164 LNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDN 243 (400)
T ss_pred HhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccc
Confidence 999999999999999999999999999999999999999988877766665431
Q ss_pred ----------------CCChHHHHHHHHHHHHhhCHHHHHHHHHHHHccccccHHHHHHHHHHHHhcCcHHHHHHHHHHH
Q psy9209 175 ----------------PNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKLAKLYDKLNETEAAADLFMEF 238 (349)
Q Consensus 175 ----------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 238 (349)
..++.+...++.-+..+|+.++|.+..+.+++..-+. .....++ ...-++...=++..++.
T Consensus 244 ~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~-~L~~~~~--~l~~~d~~~l~k~~e~~ 320 (400)
T COG3071 244 GSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDP-RLCRLIP--RLRPGDPEPLIKAAEKW 320 (400)
T ss_pred cchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccCh-hHHHHHh--hcCCCCchHHHHHHHHH
Confidence 1234455566777778888888888888888775432 2222222 34567777777788888
Q ss_pred HhcccccCCCCCCcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHcccCChHHHHHHHHHHHHHcCCCCCchhHHHHhhhc
Q psy9209 239 VSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDESSSQPMECAVVL 318 (349)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 318 (349)
++..|+ .+..+..||.++.+.+.|.+|..+|+.+++..|+. ..+..++.++..+|+..+|.+.++.++.+
T Consensus 321 l~~h~~---------~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~-~~~~~la~~~~~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 321 LKQHPE---------DPLLLSTLGRLALKNKLWGKASEALEAALKLRPSA-SDYAELADALDQLGEPEEAEQVRREALLL 390 (400)
T ss_pred HHhCCC---------ChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCCh-hhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 887777 78999999999999999999999999999988764 55788999999999999999999998843
No 96
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=99.72 E-value=2.7e-15 Score=134.27 Aligned_cols=253 Identities=13% Similarity=0.090 Sum_probs=172.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhchHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhCcccHHHHHHHHHH
Q psy9209 40 FAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDESSSQAVLYFQRALKLNPNYLGVWTLLGHE 119 (349)
Q Consensus 40 ~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 119 (349)
.++..++..+...+++++|+..++..++..|+....+..++.+ +.+.+++.++... . ++..
T Consensus 32 ~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l---~~q~~~~~~~~lv--~--------------~l~~ 92 (906)
T PRK14720 32 KELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGIL---SLSRRPLNDSNLL--N--------------LIDS 92 (906)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHH---HHhhcchhhhhhh--h--------------hhhh
Confidence 4677788887788888888888888888888777776666553 3334444433332 2 2333
Q ss_pred HHhcCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhCHHHHHH
Q psy9209 120 YMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMK 199 (349)
Q Consensus 120 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 199 (349)
.....++ .+++++...+...+.+..+++.+|.||.++|+.++|...|+++++.+|+++.++.++|..|... +.++|+.
T Consensus 93 ~~~~~~~-~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~ 170 (906)
T PRK14720 93 FSQNLKW-AIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAIT 170 (906)
T ss_pred cccccch-hHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHH
Confidence 3333344 4444444444445666678888888888888888888888888888888888888888888888 8888888
Q ss_pred HHHHHHccccccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCC-----------CCCCcchHHHHHHHHHHHHHh
Q psy9209 200 CYNKSRAIGDADGKALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAA-----------PPDKTCGFFAFKYLANHHLKA 268 (349)
Q Consensus 200 ~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~l~~~~~~~ 268 (349)
++.+++.. +...+++.++.+++.+.+...|.... ..........+.-+-..|...
T Consensus 171 m~~KAV~~--------------~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~ 236 (906)
T PRK14720 171 YLKKAIYR--------------FIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKAL 236 (906)
T ss_pred HHHHHHHH--------------HHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhh
Confidence 88888765 44455666666666666666655210 001112344555566888899
Q ss_pred CCHHHHHHHHHHHHcccCChHHHHHHHHHHHHHcC--------------------CCCCchhHHHHhhhcCCCCCCccc
Q psy9209 269 NNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQ--------------------PDESSSQPMECAVVLDPVPPSTRS 327 (349)
Q Consensus 269 g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~--------------------~~~~A~~~~~~a~~~~p~~~~~~~ 327 (349)
++|++++..++.+++.+|++..++..++.||...= ++..++..|++.+..+|.+.-.+.
T Consensus 237 ~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~~kY~~~~~~ee~l~~s~l~~~~~~~~~~i~~fek~i~f~~G~yv~H~ 315 (906)
T PRK14720 237 EDWDEVIYILKKILEHDNKNNKAREELIRFYKEKYKDHSLLEDYLKMSDIGNNRKPVKDCIADFEKNIVFDTGNFVYHR 315 (906)
T ss_pred hhhhHHHHHHHHHHhcCCcchhhHHHHHHHHHHHccCcchHHHHHHHhccccCCccHHHHHHHHHHHeeecCCCEEEEc
Confidence 99999999999999999999999999999987321 113455566666666666554444
No 97
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.71 E-value=4.2e-15 Score=131.99 Aligned_cols=154 Identities=8% Similarity=0.009 Sum_probs=142.8
Q ss_pred chHHHHHHHHHHHhhCcccHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q psy9209 91 SSSQAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQA 170 (349)
Q Consensus 91 ~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 170 (349)
...+++.-........|++++++.++|.+....|++++|...++.++++.|++..++..++.++.+.+++++|+..++++
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~ 146 (694)
T PRK15179 67 KPAAALPELLDYVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELY 146 (694)
T ss_pred chHhhHHHHHHHHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 34444555555556678889999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCCChHHHHHHHHHHHHhhCHHHHHHHHHHHHccccccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccc
Q psy9209 171 HMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKLAKLYDKLNETEAAADLFMEFVSKLDT 244 (349)
Q Consensus 171 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 244 (349)
+...|+++..++.+|.++.+.|++++|+.+|++++..+|+.+.++..+|.++...|+.++|...|+++++....
T Consensus 147 l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~ 220 (694)
T PRK15179 147 FSGGSSSAREILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGD 220 (694)
T ss_pred hhcCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998655
No 98
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.70 E-value=1.7e-13 Score=108.95 Aligned_cols=254 Identities=12% Similarity=-0.014 Sum_probs=203.7
Q ss_pred HhhCcHHHHHHHHHHHHHhccccCCCCCcchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhchHHHHHHHHHHHHhc
Q psy9209 7 DKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKR 86 (349)
Q Consensus 7 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~ 86 (349)
...|+|.+|.....+.-+ ..+.+ ..++..-+.+.-++|+++.+-.++.++-+..+++.... ....+...
T Consensus 95 l~eG~~~qAEkl~~rnae------~~e~p---~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v--~ltrarll 163 (400)
T COG3071 95 LFEGDFQQAEKLLRRNAE------HGEQP---VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAV--ELTRARLL 163 (400)
T ss_pred HhcCcHHHHHHHHHHhhh------cCcch---HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHH--HHHHHHHH
Confidence 456899999888766541 11111 14677778888999999999999999998855544332 22334455
Q ss_pred CCCcchHHHHHHHHHHHhhCcccHHHHHHHHHHHHhcCChHHHHHHHHHHHHhC--------------------------
Q psy9209 87 QPDESSSQAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEIN-------------------------- 140 (349)
Q Consensus 87 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-------------------------- 140 (349)
...|+++.|.....++++..|.++.+......+|...|++.+...++.+.-+..
T Consensus 164 l~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~ 243 (400)
T COG3071 164 LNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDN 243 (400)
T ss_pred HhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccc
Confidence 567999999999999999999999999999999999999998888877664421
Q ss_pred ----------------cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhCHHHHHHHHHHH
Q psy9209 141 ----------------NLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKS 204 (349)
Q Consensus 141 ----------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 204 (349)
..++.....++.-+...|+.++|.+..+.+++..-+.. ....++ ...-+++..=++..++.
T Consensus 244 ~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~-L~~~~~--~l~~~d~~~l~k~~e~~ 320 (400)
T COG3071 244 GSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR-LCRLIP--RLRPGDPEPLIKAAEKW 320 (400)
T ss_pred cchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh-HHHHHh--hcCCCCchHHHHHHHHH
Confidence 01355566677788899999999999999998765433 222222 23567888889999999
Q ss_pred HccccccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCCCCCcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHcc
Q psy9209 205 RAIGDADGKALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQH 284 (349)
Q Consensus 205 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 284 (349)
++..|+++..+..+|.++.+.+.|.+|..+|+.+++..|+ ...+..+|.++.+.|+..+|....+.++..
T Consensus 321 l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s----------~~~~~~la~~~~~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 321 LKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPS----------ASDYAELADALDQLGEPEEAEQVRREALLL 390 (400)
T ss_pred HHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCC----------hhhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999886 888999999999999999999999998743
No 99
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.69 E-value=1.2e-13 Score=130.68 Aligned_cols=316 Identities=10% Similarity=-0.022 Sum_probs=227.2
Q ss_pred hhhHHhhCcHHHHHHHHHHHHHhccccCCCCCcchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhchHH--HHHHHH
Q psy9209 3 NKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEE--AKSLLR 80 (349)
Q Consensus 3 a~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~--~~~~l~ 80 (349)
+.++...|++++|...+..+....+......+..........+|.++...|++++|...+++++...+.... ......
T Consensus 416 a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~ 495 (903)
T PRK04841 416 AWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATS 495 (903)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHH
Confidence 556678899999999998887544322111111222345566888999999999999999999875443221 112334
Q ss_pred HHHHhcCCCcchHHHHHHHHHHHhhCccc------HHHHHHHHHHHHhcCChHHHHHHHHHHHHhCcc--------cHHH
Q psy9209 81 SIAQKRQPDESSSQAVLYFQRALKLNPNY------LGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNL--------DYRA 146 (349)
Q Consensus 81 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~--------~~~~ 146 (349)
.++..+...|++++|...+++++...... ..++..+|.++...|++++|...+++++..... ....
T Consensus 496 ~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 575 (903)
T PRK04841 496 VLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFL 575 (903)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHH
Confidence 45566666799999999999998764321 235578899999999999999999999886221 2234
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-----ChHHHHHHHHHHHHhhCHHHHHHHHHHHHcccccc---HHHHH--
Q psy9209 147 WYGLGQTYEILRLPYYGLYYYKQAHMVRPN-----DPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDAD---GKALF-- 216 (349)
Q Consensus 147 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~~~-- 216 (349)
+..+|.++...|++++|...+.+++..... ....+..+|.++...|++++|...+.++..+.+.. .....
T Consensus 576 ~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~ 655 (903)
T PRK04841 576 LRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANA 655 (903)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHH
Confidence 567889999999999999999999876322 23456678999999999999999999997653221 11111
Q ss_pred --HHHHHHHhcCcHHHHHHHHHHHHhcccccCCCCCCcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHccc------CCh
Q psy9209 217 --KLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHE------ETA 288 (349)
Q Consensus 217 --~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~------~~~ 288 (349)
.....+...|+.+.|...+.......+. ........+..++.++...|++++|...+++++... ...
T Consensus 656 ~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~-----~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~ 730 (903)
T PRK04841 656 DKVRLIYWQMTGDKEAAANWLRQAPKPEFA-----NNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDL 730 (903)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHhcCCCCCc-----cchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHH
Confidence 1224455678999999887775542221 011122335678999999999999999999998753 123
Q ss_pred HHHHHHHHHHHHHcCCCCCchhHHHHhhhcCCCCC
Q psy9209 289 EEAKSLLRSIAQKRQPDESSSQPMECAVVLDPVPP 323 (349)
Q Consensus 289 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~ 323 (349)
..++..++.++...|+.++|...+.+++++.....
T Consensus 731 a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~~~g 765 (903)
T PRK04841 731 NRNLILLNQLYWQQGRKSEAQRVLLEALKLANRTG 765 (903)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCccc
Confidence 45778899999999999999999999998875544
No 100
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.69 E-value=9.6e-15 Score=129.73 Aligned_cols=144 Identities=13% Similarity=0.063 Sum_probs=136.8
Q ss_pred HHHhCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhCHHHHHHHHHHHHccccccHHHH
Q psy9209 136 AIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKAL 215 (349)
Q Consensus 136 a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~ 215 (349)
.....|.++.++..||.+....|.+++|...++.++++.|++..++..++.++.+.+++++|...+++++..+|+++..+
T Consensus 78 ~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~ 157 (694)
T PRK15179 78 YVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREI 157 (694)
T ss_pred HHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHH
Confidence 34457888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCcHHHHHHHHHHHHhcccccCCCCCCcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHcccCCh
Q psy9209 216 FKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETA 288 (349)
Q Consensus 216 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~ 288 (349)
+.+|.++.+.|++++|+..|++++...|+ ...++..+|.++...|+.++|...|+++++...+-
T Consensus 158 ~~~a~~l~~~g~~~~A~~~y~~~~~~~p~---------~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~ 221 (694)
T PRK15179 158 LLEAKSWDEIGQSEQADACFERLSRQHPE---------FENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDG 221 (694)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHhcCCC---------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcc
Confidence 99999999999999999999999998777 79999999999999999999999999999876543
No 101
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.68 E-value=2.6e-15 Score=107.97 Aligned_cols=117 Identities=17% Similarity=0.233 Sum_probs=94.4
Q ss_pred HHHHHHHhhCcccHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC
Q psy9209 97 LYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPN 176 (349)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 176 (349)
..+++++..+|++..+...+|..+...|++++|+..+++++..+|.++.++..+|.++...|++++|+.++++++..+|.
T Consensus 4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~ 83 (135)
T TIGR02552 4 ATLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPD 83 (135)
T ss_pred hhHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 35677777888877778888888888888888888888888888888888888888888888888888888888888888
Q ss_pred ChHHHHHHHHHHHHhhCHHHHHHHHHHHHccccccHH
Q psy9209 177 DPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGK 213 (349)
Q Consensus 177 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~ 213 (349)
++..++.+|.++...|++++|+..++++++.+|++..
T Consensus 84 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 120 (135)
T TIGR02552 84 DPRPYFHAAECLLALGEPESALKALDLAIEICGENPE 120 (135)
T ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccch
Confidence 8888888888888888888888888888888776655
No 102
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.68 E-value=3.5e-13 Score=115.71 Aligned_cols=269 Identities=11% Similarity=0.009 Sum_probs=200.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhchHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhCcccHHHHHHHHHH
Q psy9209 40 FAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDESSSQAVLYFQRALKLNPNYLGVWTLLGHE 119 (349)
Q Consensus 40 ~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 119 (349)
.++.....++...|++++|++++++....-++.... +-..+..+...|++++|...|...++.+|++...+..+..+
T Consensus 5 E~lLY~~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~---~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~ 81 (517)
T PF12569_consen 5 ELLLYKNSILEEAGDYEEALEHLEKNEKQILDKLAV---LEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEA 81 (517)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHhhhhhCCCHHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHH
Confidence 456778888999999999999999877766665555 44445567777999999999999999999999988888887
Q ss_pred HHhcC-----ChHHHHHHHHHHHHhCccc--------------------------------HHHHHHHHHHHHHhCCHHH
Q psy9209 120 YMEMK-----NTNAAIQCYRQAIEINNLD--------------------------------YRAWYGLGQTYEILRLPYY 162 (349)
Q Consensus 120 ~~~~~-----~~~~A~~~~~~a~~~~~~~--------------------------------~~~~~~l~~~~~~~~~~~~ 162 (349)
..... +.+.-..+|++.....|.. |.....+-.+|....+..-
T Consensus 82 ~g~~~~~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~ 161 (517)
T PF12569_consen 82 LGLQLQLSDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAI 161 (517)
T ss_pred HhhhcccccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHH
Confidence 73332 4566677787776665532 1222222222222222222
Q ss_pred HHHHHHHHHhc---C----------CCCh----HHHHHHHHHHHHhhCHHHHHHHHHHHHccccccHHHHHHHHHHHHhc
Q psy9209 163 GLYYYKQAHMV---R----------PNDP----RMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKLAKLYDKL 225 (349)
Q Consensus 163 A~~~~~~~~~~---~----------~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~ 225 (349)
...++...... . ...+ .+++.++..|...|++++|+.+.+++|+..|..++.+...|.++...
T Consensus 162 i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~ 241 (517)
T PF12569_consen 162 IESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHA 241 (517)
T ss_pred HHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHC
Confidence 22222222111 0 1112 34578899999999999999999999999999999999999999999
Q ss_pred CcHHHHHHHHHHHHhcccccCCCCCCcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHccc--CC-------hHHHHHHHH
Q psy9209 226 NETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHE--ET-------AEEAKSLLR 296 (349)
Q Consensus 226 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~--~~-------~~~~~~~l~ 296 (349)
|++.+|...++.+-.+++. +-.+-...+..+.+.|+.++|...+......+ |. ........|
T Consensus 242 G~~~~Aa~~~~~Ar~LD~~---------DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a 312 (517)
T PF12569_consen 242 GDLKEAAEAMDEARELDLA---------DRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECA 312 (517)
T ss_pred CCHHHHHHHHHHHHhCChh---------hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHH
Confidence 9999999999999999988 67777888999999999999999998876654 21 122234468
Q ss_pred HHHHHcCCCCCchhHHHHhhhcCC
Q psy9209 297 SIAQKRQPDESSSQPMECAVVLDP 320 (349)
Q Consensus 297 ~~~~~~~~~~~A~~~~~~a~~~~p 320 (349)
.++.+.|++..|+..|..+.+..-
T Consensus 313 ~a~~r~~~~~~ALk~~~~v~k~f~ 336 (517)
T PF12569_consen 313 EAYLRQGDYGLALKRFHAVLKHFD 336 (517)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHH
Confidence 999999999999999988876543
No 103
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=99.67 E-value=1.9e-14 Score=128.91 Aligned_cols=197 Identities=12% Similarity=0.061 Sum_probs=146.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhchHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhCcccHHHHHHHHHH
Q psy9209 40 FAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDESSSQAVLYFQRALKLNPNYLGVWTLLGHE 119 (349)
Q Consensus 40 ~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 119 (349)
.+|+.+|.++.+.+++.++... .++..- ....++ .+++++-..+...+.+..+++.+|.|
T Consensus 66 ~~yy~~G~l~~q~~~~~~~~lv--~~l~~~-----------------~~~~~~-~~ve~~~~~i~~~~~~k~Al~~LA~~ 125 (906)
T PRK14720 66 SALYISGILSLSRRPLNDSNLL--NLIDSF-----------------SQNLKW-AIVEHICDKILLYGENKLALRTLAEA 125 (906)
T ss_pred ehHHHHHHHHHhhcchhhhhhh--hhhhhc-----------------ccccch-hHHHHHHHHHHhhhhhhHHHHHHHHH
Confidence 4688888888888886665544 333322 222344 55555555566677777788999999
Q ss_pred HHhcCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhCHHHHHH
Q psy9209 120 YMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMK 199 (349)
Q Consensus 120 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 199 (349)
|-++|+.++|...|+++++.+|+++.+..++|..|... +.++|+.++.+++.. +...+++.++..
T Consensus 126 Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~--------------~i~~kq~~~~~e 190 (906)
T PRK14720 126 YAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR--------------FIKKKQYVGIEE 190 (906)
T ss_pred HHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH--------------HHhhhcchHHHH
Confidence 99999999999999999999999999999999998888 899999999888765 566678888888
Q ss_pred HHHHHHccccccHHHHH--------------------HHHHHHHhcCcHHHHHHHHHHHHhcccccCCCCCCcchHHHHH
Q psy9209 200 CYNKSRAIGDADGKALF--------------------KLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFK 259 (349)
Q Consensus 200 ~~~~a~~~~~~~~~~~~--------------------~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (349)
++.+.+..+|.+.+.+. -+-..|...++|++++.+++.+++..|. +..+..
T Consensus 191 ~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~---------n~~a~~ 261 (906)
T PRK14720 191 IWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNK---------NNKARE 261 (906)
T ss_pred HHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCc---------chhhHH
Confidence 88888888877644422 2226677788899999999999999888 788888
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHc
Q psy9209 260 YLANHHLKANNLDTAYKCAQKCLQ 283 (349)
Q Consensus 260 ~l~~~~~~~g~~~~A~~~~~~a~~ 283 (349)
.++.+|.. .|.. ...++..++
T Consensus 262 ~l~~~y~~--kY~~-~~~~ee~l~ 282 (906)
T PRK14720 262 ELIRFYKE--KYKD-HSLLEDYLK 282 (906)
T ss_pred HHHHHHHH--HccC-cchHHHHHH
Confidence 88888873 3322 444444443
No 104
>KOG1128|consensus
Probab=99.67 E-value=1e-14 Score=124.07 Aligned_cols=220 Identities=14% Similarity=0.047 Sum_probs=187.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhchHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhCcccHHHHHHHHH
Q psy9209 39 FFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDESSSQAVLYFQRALKLNPNYLGVWTLLGH 118 (349)
Q Consensus 39 ~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~ 118 (349)
...-..++..+...|-..+|+..|++.-.-+| ...+|...|+..+|..+..+-++ .|+++..|..+|.
T Consensus 398 Wq~q~~laell~slGitksAl~I~Erlemw~~-----------vi~CY~~lg~~~kaeei~~q~le-k~~d~~lyc~LGD 465 (777)
T KOG1128|consen 398 WQLQRLLAELLLSLGITKSALVIFERLEMWDP-----------VILCYLLLGQHGKAEEINRQELE-KDPDPRLYCLLGD 465 (777)
T ss_pred chHHHHHHHHHHHcchHHHHHHHHHhHHHHHH-----------HHHHHHHhcccchHHHHHHHHhc-CCCcchhHHHhhh
Confidence 35677899999999999999999998643332 22334445888999999999888 6667888888888
Q ss_pred HHHhcCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhCHHHHH
Q psy9209 119 EYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAM 198 (349)
Q Consensus 119 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 198 (349)
+.....-|++|.++.+.. +..+...+|......++++++.++++..++++|-....|+.+|.+..+.+++..|.
T Consensus 466 v~~d~s~yEkawElsn~~------sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av 539 (777)
T KOG1128|consen 466 VLHDPSLYEKAWELSNYI------SARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAV 539 (777)
T ss_pred hccChHHHHHHHHHhhhh------hHHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHH
Confidence 877766666666655443 45577778888888999999999999999999999999999999999999999999
Q ss_pred HHHHHHHccccccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCCCCCcchHHHHHHHHHHHHHhCCHHHHHHHH
Q psy9209 199 KCYNKSRAIGDADGKALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCA 278 (349)
Q Consensus 199 ~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 278 (349)
..|..++...|++..+|.+++..|...|+-.+|...++++++-+-. +..+|.+...+..+.|.+++|+..+
T Consensus 540 ~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~---------~w~iWENymlvsvdvge~eda~~A~ 610 (777)
T KOG1128|consen 540 KAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQ---------HWQIWENYMLVSVDVGEFEDAIKAY 610 (777)
T ss_pred HHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCC---------CCeeeechhhhhhhcccHHHHHHHH
Confidence 9999999999999999999999999999999999999999998765 7888999999999999999999999
Q ss_pred HHHHccc
Q psy9209 279 QKCLQHE 285 (349)
Q Consensus 279 ~~a~~~~ 285 (349)
.+.+.+.
T Consensus 611 ~rll~~~ 617 (777)
T KOG1128|consen 611 HRLLDLR 617 (777)
T ss_pred HHHHHhh
Confidence 9987654
No 105
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.67 E-value=4.3e-15 Score=106.82 Aligned_cols=113 Identities=15% Similarity=0.169 Sum_probs=64.8
Q ss_pred HHHHHHHhCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhCHHHHHHHHHHHHcccccc
Q psy9209 132 CYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDAD 211 (349)
Q Consensus 132 ~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~ 211 (349)
.+++++..+|++......+|..+...|++++|...+++++..+|.++.++..+|.++...|++++|..++++++..+|.+
T Consensus 5 ~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~ 84 (135)
T TIGR02552 5 TLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDD 84 (135)
T ss_pred hHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 45555555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccc
Q psy9209 212 GKALFKLAKLYDKLNETEAAADLFMEFVSKLDT 244 (349)
Q Consensus 212 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 244 (349)
+..++.+|.++...|++++|+..++++++..|+
T Consensus 85 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 117 (135)
T TIGR02552 85 PRPYFHAAECLLALGEPESALKALDLAIEICGE 117 (135)
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Confidence 555555555555555555555555555555554
No 106
>KOG1128|consensus
Probab=99.67 E-value=4e-14 Score=120.55 Aligned_cols=215 Identities=15% Similarity=0.164 Sum_probs=185.3
Q ss_pred hhhhHHhhCcHHHHHHHHHHHHHhccccCCCCCcchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhchHHHHHHHHH
Q psy9209 2 RNKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRS 81 (349)
Q Consensus 2 ~a~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~ 81 (349)
+|.++...|-...|+.+|++.- .|-....+|...|+..+|..+..+-++ .|.++..+..++.
T Consensus 404 laell~slGitksAl~I~Erle-----------------mw~~vi~CY~~lg~~~kaeei~~q~le-k~~d~~lyc~LGD 465 (777)
T KOG1128|consen 404 LAELLLSLGITKSALVIFERLE-----------------MWDPVILCYLLLGQHGKAEEINRQELE-KDPDPRLYCLLGD 465 (777)
T ss_pred HHHHHHHcchHHHHHHHHHhHH-----------------HHHHHHHHHHHhcccchHHHHHHHHhc-CCCcchhHHHhhh
Confidence 5788899999999999997754 578889999999999999999999888 4445555444443
Q ss_pred HHHhcCCCcchHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCH
Q psy9209 82 IAQKRQPDESSSQAVLYFQRALKLNPN-YLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLP 160 (349)
Q Consensus 82 ~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~ 160 (349)
+ . .=..+|+++.++... +..+...+|......++|+++.++++..++++|-....|+.+|.+..+.+++
T Consensus 466 v---~-------~d~s~yEkawElsn~~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~ 535 (777)
T KOG1128|consen 466 V---L-------HDPSLYEKAWELSNYISARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKE 535 (777)
T ss_pred h---c-------cChHHHHHHHHHhhhhhHHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhh
Confidence 3 3 233455555554322 3457778888888899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhCHHHHHHHHHHHHccccccHHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Q psy9209 161 YYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKLAKLYDKLNETEAAADLFMEFVS 240 (349)
Q Consensus 161 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 240 (349)
+.|...|..++.+.|++..+|.+++..|...|+-.+|...++++++-+-.+..+|-+.-.+....|.+++|++.+.+.+.
T Consensus 536 q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 536 QAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLD 615 (777)
T ss_pred HHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999988999999999999999999999999999988
Q ss_pred cccc
Q psy9209 241 KLDT 244 (349)
Q Consensus 241 ~~~~ 244 (349)
+...
T Consensus 616 ~~~~ 619 (777)
T KOG1128|consen 616 LRKK 619 (777)
T ss_pred hhhh
Confidence 7554
No 107
>KOG2376|consensus
Probab=99.66 E-value=2.2e-13 Score=113.46 Aligned_cols=287 Identities=13% Similarity=0.044 Sum_probs=190.3
Q ss_pred hHHhhCcHHHHHHHHHHHHHhccccCCCCCcchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhchHHHHHHHHHHHH
Q psy9209 5 LYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQ 84 (349)
Q Consensus 5 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~ 84 (349)
.+...|+|++|.....+++... |+.. .++...-.+..+.+.|++|+...+.-......+. ....-+.
T Consensus 21 ~~~~~~e~e~a~k~~~Kil~~~------pdd~---~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~----~~fEKAY 87 (652)
T KOG2376|consen 21 RHGKNGEYEEAVKTANKILSIV------PDDE---DAIRCKVVALIQLDKYEDALKLIKKNGALLVINS----FFFEKAY 87 (652)
T ss_pred HhccchHHHHHHHHHHHHHhcC------CCcH---hhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcch----hhHHHHH
Confidence 3456789999999999988433 2221 4677777888999999999855544332221111 1134445
Q ss_pred hcCCCcchHHHHHHHHHHHhhCcccHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCc-----------------------
Q psy9209 85 KRQPDESSSQAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINN----------------------- 141 (349)
Q Consensus 85 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~----------------------- 141 (349)
+.++.+..++|+..++ ..++.+.......|.+++++|+|++|...|+..++.+.
T Consensus 88 c~Yrlnk~Dealk~~~---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~ 164 (652)
T KOG2376|consen 88 CEYRLNKLDEALKTLK---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLL 164 (652)
T ss_pred HHHHcccHHHHHHHHh---cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHH
Confidence 5667799999999988 45566667888899999999999999999998865422
Q ss_pred --------ccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--------CCC-------ChHHHHHHHHHHHHhhCHHHHH
Q psy9209 142 --------LDYRAWYGLGQTYEILRLPYYGLYYYKQAHMV--------RPN-------DPRMLTALGEAFEKQEKISEAM 198 (349)
Q Consensus 142 --------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~-------~~~~~~~l~~~~~~~~~~~~A~ 198 (349)
+..+.+++.+.++...|+|.+|++.+++++.+ +.+ -..+...++.++..+|+..+|.
T Consensus 165 q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~ 244 (652)
T KOG2376|consen 165 QSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEAS 244 (652)
T ss_pred HhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHH
Confidence 13456778888888899999999998888443 111 1145677888888899999999
Q ss_pred HHHHHHHccccccHH-------------------------------------------------HHHHHHHHHHhcCcHH
Q psy9209 199 KCYNKSRAIGDADGK-------------------------------------------------ALFKLAKLYDKLNETE 229 (349)
Q Consensus 199 ~~~~~a~~~~~~~~~-------------------------------------------------~~~~l~~~~~~~~~~~ 229 (349)
..|...+..+|.+.. ++.+.+.+.+..+..+
T Consensus 245 ~iy~~~i~~~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~ 324 (652)
T KOG2376|consen 245 SIYVDIIKRNPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMD 324 (652)
T ss_pred HHHHHHHHhcCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 988888887654321 1112222222222222
Q ss_pred HHHHHHHHHHhcccccCCCCCCcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHcccCCh-HHHHHHHHHHHHHcCCCCCc
Q psy9209 230 AAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETA-EEAKSLLRSIAQKRQPDESS 308 (349)
Q Consensus 230 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~-~~~~~~l~~~~~~~~~~~~A 308 (349)
.+.+...+.-...|. ...--........+...+..|..++....+..|.. ..+...++++...+|+++.|
T Consensus 325 q~r~~~a~lp~~~p~---------~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A 395 (652)
T KOG2376|consen 325 QVRELSASLPGMSPE---------SLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVA 395 (652)
T ss_pred HHHHHHHhCCccCch---------HHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHH
Confidence 222222211111121 22222223333334447889999999998888876 77888899999999999999
Q ss_pred hhHHHHhh
Q psy9209 309 SQPMECAV 316 (349)
Q Consensus 309 ~~~~~~a~ 316 (349)
++.+...+
T Consensus 396 ~~il~~~~ 403 (652)
T KOG2376|consen 396 LEILSLFL 403 (652)
T ss_pred HHHHHHHh
Confidence 99998443
No 108
>KOG1915|consensus
Probab=99.66 E-value=1.6e-12 Score=105.74 Aligned_cols=307 Identities=12% Similarity=0.062 Sum_probs=215.5
Q ss_pred HHhhCcHHHHHHHHHHHHHhccccCCCCCcchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhch--HHHHHHHHHHH
Q psy9209 6 YDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETA--EEAKSLLRSIA 83 (349)
Q Consensus 6 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~--~~~~~~l~~~~ 83 (349)
-.+.|+..-|..+|+.+++.+.... .....+...+..-..+..++.|..+|+-++..-|.+ .+.+..+...-
T Consensus 217 E~k~g~~~~aR~VyerAie~~~~d~------~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fE 290 (677)
T KOG1915|consen 217 EEKHGNVALARSVYERAIEFLGDDE------EAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFE 290 (677)
T ss_pred HHhcCcHHHHHHHHHHHHHHhhhHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHH
Confidence 3445555556666665554332211 111223333333334445555555566555555543 22222222222
Q ss_pred HhcCCCcchHHHHH-----HHHHHHhhCcccHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCcccH---------HHHHH
Q psy9209 84 QKRQPDESSSQAVL-----YFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDY---------RAWYG 149 (349)
Q Consensus 84 ~~~~~~~~~~~A~~-----~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~---------~~~~~ 149 (349)
..+....-.++++. -|++.+..+|-+.++|+..-.+-...|+.+.-.+.|++|+...|... -.|.+
T Consensus 291 KqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWin 370 (677)
T KOG1915|consen 291 KQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWIN 370 (677)
T ss_pred HHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHH
Confidence 22322222333332 35566777888899999988888899999999999999999766532 22333
Q ss_pred HHH-HHHHhCCHHHHHHHHHHHHhcCCCC----hHHHHHHHHHHHHhhCHHHHHHHHHHHHccccccHHHHHHHHHHHHh
Q psy9209 150 LGQ-TYEILRLPYYGLYYYKQAHMVRPND----PRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKLAKLYDK 224 (349)
Q Consensus 150 l~~-~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~ 224 (349)
.+. .-....+.+.+.+.|+.++++-|.. +.+|...|.....+.+...|...+-.++-..|. ..+.-....+-.+
T Consensus 371 YalyeEle~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK-~KlFk~YIelElq 449 (677)
T KOG1915|consen 371 YALYEELEAEDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPK-DKLFKGYIELELQ 449 (677)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCc-hhHHHHHHHHHHH
Confidence 332 1235688999999999999998875 467888899999999999999999999999995 4555666677889
Q ss_pred cCcHHHHHHHHHHHHhcccccCCCCCCcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHcccCCh--HHHHHHHHHHHHHc
Q psy9209 225 LNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETA--EEAKSLLRSIAQKR 302 (349)
Q Consensus 225 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~--~~~~~~l~~~~~~~ 302 (349)
+++++.....|++.+...|. +..+|...|.+-..+|+.+.|...|+-|+....-+ .-.|..........
T Consensus 450 L~efDRcRkLYEkfle~~Pe---------~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~ 520 (677)
T KOG1915|consen 450 LREFDRCRKLYEKFLEFSPE---------NCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEE 520 (677)
T ss_pred HhhHHHHHHHHHHHHhcChH---------hhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhc
Confidence 99999999999999999998 89999999999999999999999999999875432 23444555666788
Q ss_pred CCCCCchhHHHHhhhcCCCCCCccccC
Q psy9209 303 QPDESSSQPMECAVVLDPVPPSTRSSK 329 (349)
Q Consensus 303 ~~~~~A~~~~~~a~~~~p~~~~~~~~~ 329 (349)
|.++.|...|++.++..+... +|..+
T Consensus 521 ~E~ekaR~LYerlL~rt~h~k-vWisF 546 (677)
T KOG1915|consen 521 GEFEKARALYERLLDRTQHVK-VWISF 546 (677)
T ss_pred chHHHHHHHHHHHHHhcccch-HHHhH
Confidence 999999999999999887765 55444
No 109
>KOG0553|consensus
Probab=99.64 E-value=1.3e-14 Score=111.40 Aligned_cols=119 Identities=16% Similarity=0.068 Sum_probs=74.6
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhCHHHHHHHHHHHHccccccHHHHHHHHHHHHh
Q psy9209 145 RAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKLAKLYDK 224 (349)
Q Consensus 145 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~ 224 (349)
+-+-.-|.-+...++|.+|+..|.+||+++|.++..|.+.+.+|.++|.++.|++-++.++.++|....+|..||.+|..
T Consensus 82 E~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~ 161 (304)
T KOG0553|consen 82 ESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLA 161 (304)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHc
Confidence 34445555666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred cCcHHHHHHHHHHHHhcccccCCCCCCcchHHHHHHHHHHHHHhCCHH
Q psy9209 225 LNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLD 272 (349)
Q Consensus 225 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 272 (349)
+|++++|++.|+++++++|. +...+.+|..+-.+.++..
T Consensus 162 ~gk~~~A~~aykKaLeldP~---------Ne~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 162 LGKYEEAIEAYKKALELDPD---------NESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred cCcHHHHHHHHHhhhccCCC---------cHHHHHHHHHHHHHhcCCC
Confidence 66666666666666666666 4455555554444444433
No 110
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.63 E-value=1.6e-14 Score=115.80 Aligned_cols=257 Identities=11% Similarity=-0.001 Sum_probs=148.5
Q ss_pred HHHHhcCCHHHHHHHHHHHhhhhhchHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhCcccHHHHHHHHHHHHhcCCh
Q psy9209 47 NHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDESSSQAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNT 126 (349)
Q Consensus 47 ~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~ 126 (349)
+.++-.|+|..++..++ ....+|.... .....+++++...|+++..+..... ..+....+...++..+...++-
T Consensus 9 rn~fy~G~Y~~~i~e~~-~~~~~~~~~~--e~~~~~~Rs~iAlg~~~~vl~ei~~---~~~~~l~av~~la~y~~~~~~~ 82 (290)
T PF04733_consen 9 RNQFYLGNYQQCINEAS-LKSFSPENKL--ERDFYQYRSYIALGQYDSVLSEIKK---SSSPELQAVRLLAEYLSSPSDK 82 (290)
T ss_dssp HHHHCTT-HHHHCHHHH-CHTSTCHHHH--HHHHHHHHHHHHTT-HHHHHHHS-T---TSSCCCHHHHHHHHHHCTSTTH
T ss_pred HHHHHhhhHHHHHHHhh-ccCCCchhHH--HHHHHHHHHHHHcCChhHHHHHhcc---CCChhHHHHHHHHHHHhCccch
Confidence 34556777777776555 2222222111 1122223333334666555443322 1222334555555555444455
Q ss_pred HHHHHHHHHHHHhC--cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhCHHHHHHHHHHH
Q psy9209 127 NAAIQCYRQAIEIN--NLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKS 204 (349)
Q Consensus 127 ~~A~~~~~~a~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 204 (349)
+.++..++..+... +.++.+....|.++...|++++|++.+.+. .+.+.......++...++++.|.+.++.+
T Consensus 83 e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~-----~~lE~~al~Vqi~L~~~R~dlA~k~l~~~ 157 (290)
T PF04733_consen 83 ESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG-----GSLELLALAVQILLKMNRPDLAEKELKNM 157 (290)
T ss_dssp HCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT-----TCHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc-----CcccHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 55555555443322 123444555566677777777777766543 45566666777777777777777777777
Q ss_pred HccccccHHHHHHHHHHHHhcC--cHHHHHHHHHHHHhcccccCCCCCCcchHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q psy9209 205 RAIGDADGKALFKLAKLYDKLN--ETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCL 282 (349)
Q Consensus 205 ~~~~~~~~~~~~~l~~~~~~~~--~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 282 (349)
.+.+++..-+...-+.+....| ++.+|...|++.....+. .+..+..++.++..+|++++|...+++++
T Consensus 158 ~~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~---------t~~~lng~A~~~l~~~~~~eAe~~L~~al 228 (290)
T PF04733_consen 158 QQIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGS---------TPKLLNGLAVCHLQLGHYEEAEELLEEAL 228 (290)
T ss_dssp HCCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS-----------SHHHHHHHHHHHHHCT-HHHHHHHHHHHC
T ss_pred HhcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCC---------CHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 7776665544444455544444 477777777776665544 56777777777777777777777777777
Q ss_pred cccCChHHHHHHHHHHHHHcCCC-CCchhHHHHhhhcCCCCC
Q psy9209 283 QHEETAEEAKSLLRSIAQKRQPD-ESSSQPMECAVVLDPVPP 323 (349)
Q Consensus 283 ~~~~~~~~~~~~l~~~~~~~~~~-~~A~~~~~~a~~~~p~~~ 323 (349)
..+|+++++..++..+....|+. +.+.+++.+....+|+++
T Consensus 229 ~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h~ 270 (290)
T PF04733_consen 229 EKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPNHP 270 (290)
T ss_dssp CC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTSH
T ss_pred HhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCCh
Confidence 77777777777777777777777 345556666666677654
No 111
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.63 E-value=4.2e-14 Score=113.36 Aligned_cols=260 Identities=13% Similarity=-0.002 Sum_probs=187.4
Q ss_pred hhHHhhCcHHHHHHHHHHHHHhccccCCCCCcchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhchHHHHHHHHHHH
Q psy9209 4 KLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIA 83 (349)
Q Consensus 4 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~ 83 (349)
+-++-.|+|..++..++ .. ...+. ........+.++++..|+++..+.-....- .|. ..+ +..++
T Consensus 9 rn~fy~G~Y~~~i~e~~-~~------~~~~~--~~~e~~~~~~Rs~iAlg~~~~vl~ei~~~~--~~~-l~a---v~~la 73 (290)
T PF04733_consen 9 RNQFYLGNYQQCINEAS-LK------SFSPE--NKLERDFYQYRSYIALGQYDSVLSEIKKSS--SPE-LQA---VRLLA 73 (290)
T ss_dssp HHHHCTT-HHHHCHHHH-CH------TSTCH--HHHHHHHHHHHHHHHTT-HHHHHHHS-TTS--SCC-CHH---HHHHH
T ss_pred HHHHHhhhHHHHHHHhh-cc------CCCch--hHHHHHHHHHHHHHHcCChhHHHHHhccCC--Chh-HHH---HHHHH
Confidence 44566899999997664 11 11121 112457788899999999887665443321 232 222 23333
Q ss_pred HhcCCCcchHHHHHHHHHHHhhC--cccHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHH
Q psy9209 84 QKRQPDESSSQAVLYFQRALKLN--PNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPY 161 (349)
Q Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~ 161 (349)
..+...++-+.++..++..+... +.++......|.++...|++++|++.+.+. .+.+.......++...++++
T Consensus 74 ~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~-----~~lE~~al~Vqi~L~~~R~d 148 (290)
T PF04733_consen 74 EYLSSPSDKESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG-----GSLELLALAVQILLKMNRPD 148 (290)
T ss_dssp HHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT-----TCHHHHHHHHHHHHHTT-HH
T ss_pred HHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc-----CcccHHHHHHHHHHHcCCHH
Confidence 44443355666776666554332 234556677788899999999999988764 45677778888999999999
Q ss_pred HHHHHHHHHHhcCCCChHHHHHHHHHHHHhh--CHHHHHHHHHHHHccccccHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Q psy9209 162 YGLYYYKQAHMVRPNDPRMLTALGEAFEKQE--KISEAMKCYNKSRAIGDADGKALFKLAKLYDKLNETEAAADLFMEFV 239 (349)
Q Consensus 162 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 239 (349)
.|.+.++.+.+.+.+..-+....+++....| ++.+|.-.|++.....+.++.++..++.++..+|++++|...+++++
T Consensus 149 lA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al 228 (290)
T PF04733_consen 149 LAEKELKNMQQIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEAL 228 (290)
T ss_dssp HHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHC
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 9999999999888776666666666666666 58999999999988888899999999999999999999999999999
Q ss_pred hcccccCCCCCCcchHHHHHHHHHHHHHhCCH-HHHHHHHHHHHcccCChHHHH
Q psy9209 240 SKLDTFAAPPDKTCGFFAFKYLANHHLKANNL-DTAYKCAQKCLQHEETAEEAK 292 (349)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~a~~~~~~~~~~~ 292 (349)
..+|. ++.++.+++.+....|+. +.+.+++.+....+|+++...
T Consensus 229 ~~~~~---------~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h~~~~ 273 (290)
T PF04733_consen 229 EKDPN---------DPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPNHPLVK 273 (290)
T ss_dssp CC-CC---------HHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTSHHHH
T ss_pred HhccC---------CHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCChHHH
Confidence 99888 899999999999999988 667788888888888876544
No 112
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.63 E-value=4.1e-14 Score=99.63 Aligned_cols=107 Identities=17% Similarity=0.242 Sum_probs=97.1
Q ss_pred HHhhC-cccHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHH
Q psy9209 102 ALKLN-PNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRM 180 (349)
Q Consensus 102 ~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 180 (349)
...+. ++..+..+.+|..+...|++++|...|+-+..++|.+...|++||.++..+|++++|+..|.+++.++|+++.+
T Consensus 26 l~~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~ 105 (157)
T PRK15363 26 LLDDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQA 105 (157)
T ss_pred HHCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchH
Confidence 34456 67778889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhCHHHHHHHHHHHHccc
Q psy9209 181 LTALGEAFEKQEKISEAMKCYNKSRAIG 208 (349)
Q Consensus 181 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 208 (349)
+++.|.|++..|+.+.|...|+.++...
T Consensus 106 ~~~ag~c~L~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 106 PWAAAECYLACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 9999999999999999999999998875
No 113
>KOG3785|consensus
Probab=99.63 E-value=3e-13 Score=106.05 Aligned_cols=296 Identities=16% Similarity=0.038 Sum_probs=193.3
Q ss_pred hhhHHhhCcHHHHHHHHHHHHHhccccCCCCCcchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhchHHHHHHHH--
Q psy9209 3 NKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLR-- 80 (349)
Q Consensus 3 a~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~-- 80 (349)
|.++...|+|++|+..|+-+.+. .+++. ..+..++-+++-.|.|.+|...-.++-+ ++....++.
T Consensus 64 a~C~fhLgdY~~Al~~Y~~~~~~-----~~~~~----el~vnLAcc~FyLg~Y~eA~~~~~ka~k----~pL~~RLlfhl 130 (557)
T KOG3785|consen 64 AHCYFHLGDYEEALNVYTFLMNK-----DDAPA----ELGVNLACCKFYLGQYIEAKSIAEKAPK----TPLCIRLLFHL 130 (557)
T ss_pred HHHHHhhccHHHHHHHHHHHhcc-----CCCCc----ccchhHHHHHHHHHHHHHHHHHHhhCCC----ChHHHHHHHHH
Confidence 56889999999999999877631 12222 4688999999999999999887766532 111111111
Q ss_pred -------------------------HHHHhcCCCcchHHHHHHHHHHHhhCcccHHHHHHHHHHHHhcCChHHHHHHHHH
Q psy9209 81 -------------------------SIAQKRQPDESSSQAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQ 135 (349)
Q Consensus 81 -------------------------~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 135 (349)
.++...+..-.+++|+..|.+++..+|+....-..++.+|.++.-|+-+.+.+.-
T Consensus 131 ahklndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~v 210 (557)
T KOG3785|consen 131 AHKLNDEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKV 210 (557)
T ss_pred HHHhCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHH
Confidence 1222233345788999999999998888887788899999999999999999888
Q ss_pred HHHhCcccHHHHHHHHHHHHHhCCHHHHHHHHHH----------------------------HHhcCC----CChHHHHH
Q psy9209 136 AIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQ----------------------------AHMVRP----NDPRMLTA 183 (349)
Q Consensus 136 a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~----------------------------~~~~~~----~~~~~~~~ 183 (349)
-+...|+.+.+....+...++.=+-..|..-... +++.-| .-|++..+
T Consensus 211 YL~q~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlN 290 (557)
T KOG3785|consen 211 YLRQFPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLN 290 (557)
T ss_pred HHHhCCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhh
Confidence 8888888888777777666543221111111111 111112 13467788
Q ss_pred HHHHHHHhhCHHHHHHHHHHHHccccccHHHHHHHHHHHHhcCcHHHHHHHHHHHHh---cccccCC----CC-------
Q psy9209 184 LGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKLAKLYDKLNETEAAADLFMEFVS---KLDTFAA----PP------- 249 (349)
Q Consensus 184 l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~----~~------- 249 (349)
+...|..+++..+|+...+ .++|..|.-+...|.+....|+-....+.++-+-. +-...+. +.
T Consensus 291 L~iYyL~q~dVqeA~~L~K---dl~PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs 367 (557)
T KOG3785|consen 291 LIIYYLNQNDVQEAISLCK---DLDPTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMAS 367 (557)
T ss_pred heeeecccccHHHHHHHHh---hcCCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHH
Confidence 8888999999999988765 46788888888888888888876555544443322 2111100 00
Q ss_pred --------------------CCcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHccc-CChHHHHHHHHHHHHHcCCCCCc
Q psy9209 250 --------------------DKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHE-ETAEEAKSLLRSIAQKRQPDESS 308 (349)
Q Consensus 250 --------------------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A 308 (349)
--..+....++++..+...|++.+|.+.|-+.-... .+......+++.|+...+.++.|
T Consensus 368 ~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lA 447 (557)
T KOG3785|consen 368 YFFLSFQFDDVLTYLNSIESYFTNDDDFNLNLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLA 447 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHH
Confidence 000122334566777777777777777776654433 34445556777888877777777
Q ss_pred hhHHHH
Q psy9209 309 SQPMEC 314 (349)
Q Consensus 309 ~~~~~~ 314 (349)
...+-+
T Consensus 448 W~~~lk 453 (557)
T KOG3785|consen 448 WDMMLK 453 (557)
T ss_pred HHHHHh
Confidence 666543
No 114
>KOG0553|consensus
Probab=99.61 E-value=1.8e-14 Score=110.61 Aligned_cols=119 Identities=21% Similarity=0.231 Sum_probs=106.0
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Q psy9209 111 GVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEK 190 (349)
Q Consensus 111 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 190 (349)
+-+-.-|.-.++.++|.+|+..|.+||+++|.++..|.+.+.+|.++|.++.|++-++.++.++|....+|..+|.+|..
T Consensus 82 E~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~ 161 (304)
T KOG0553|consen 82 ESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLA 161 (304)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHc
Confidence 44566788888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhCHHHHHHHHHHHHccccccHHHHHHHHHHHHhcCcHH
Q psy9209 191 QEKISEAMKCYNKSRAIGDADGKALFKLAKLYDKLNETE 229 (349)
Q Consensus 191 ~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~ 229 (349)
+|++++|++.|+++++++|++...+.+|..+-..+++..
T Consensus 162 ~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 162 LGKYEEAIEAYKKALELDPDNESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred cCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCC
Confidence 999999999999999999999988888877766666554
No 115
>KOG2376|consensus
Probab=99.60 E-value=5.5e-12 Score=105.27 Aligned_cols=135 Identities=12% Similarity=0.017 Sum_probs=89.6
Q ss_pred CHHHHHHHHHHHHcccccc-HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCCCCCcchHHHHHHHHHHHHHhCCH
Q psy9209 193 KISEAMKCYNKSRAIGDAD-GKALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNL 271 (349)
Q Consensus 193 ~~~~A~~~~~~a~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 271 (349)
.+.+|+..+....+.+|.. ..+...++.+...+|+++.|++.+...+...... .......+.+-..+-..+...++.
T Consensus 356 ~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss--~~~~~~~P~~V~aiv~l~~~~~~~ 433 (652)
T KOG2376|consen 356 KHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSS--ILEAKHLPGTVGAIVALYYKIKDN 433 (652)
T ss_pred HHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhh--hhhhccChhHHHHHHHHHHhccCC
Confidence 4566777777777777766 6678888999999999999999998433211100 000111344444555666666666
Q ss_pred HHHHHHHHHHHcc-------cCChHHHHHHHHHHHHHcCCCCCchhHHHHhhhcCCCCCCccccC
Q psy9209 272 DTAYKCAQKCLQH-------EETAEEAKSLLRSIAQKRQPDESSSQPMECAVVLDPVPPSTRSSK 329 (349)
Q Consensus 272 ~~A~~~~~~a~~~-------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~ 329 (349)
+.|...+.+++.. .+.....+...+....+.|+.++|...+++.++.+|++.++...+
T Consensus 434 ~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~~d~~~l~~l 498 (652)
T KOG2376|consen 434 DSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFNPNDTDLLVQL 498 (652)
T ss_pred ccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCCchHHHHHHH
Confidence 6666666666543 223334455567777778999999999999999999887765544
No 116
>KOG1941|consensus
Probab=99.59 E-value=6e-13 Score=104.61 Aligned_cols=301 Identities=15% Similarity=0.173 Sum_probs=226.2
Q ss_pred HHhhCcHHHHHHHHHHHHHhccccCCCCCcchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhc---hHHHHHHHHHH
Q psy9209 6 YDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEET---AEEAKSLLRSI 82 (349)
Q Consensus 6 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~---~~~~~~~l~~~ 82 (349)
+....++++|+..+.+.+.+++.. ..++..+-.+..+...+|.+++++.+--..+....+ ....+..+.++
T Consensus 16 Ly~s~~~~~al~~w~~~L~~l~~~------~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnl 89 (518)
T KOG1941|consen 16 LYQSNQTEKALQVWTKVLEKLSDL------MGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNL 89 (518)
T ss_pred HhcCchHHHHHHHHHHHHHHHHHH------HHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788999999999999655433 233456777788888999999888766555543222 22233445566
Q ss_pred HHhcCCCcchHHHHHHHHHHHhhCcc-----cHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCccc------HHHHHHHH
Q psy9209 83 AQKRQPDESSSQAVLYFQRALKLNPN-----YLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLD------YRAWYGLG 151 (349)
Q Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~~~~-----~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~------~~~~~~l~ 151 (349)
+..+....++.+++.+....+.+... -..+...+|..+..++.++++++.|++++++..++ ..++..+|
T Consensus 90 ar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lg 169 (518)
T KOG1941|consen 90 ARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLG 169 (518)
T ss_pred HHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHH
Confidence 66665567888888888777765322 23567889999999999999999999999874432 35788999
Q ss_pred HHHHHhCCHHHHHHHHHHHHhcCCC----C------hHHHHHHHHHHHHhhCHHHHHHHHHHHHccc------cccHHHH
Q psy9209 152 QTYEILRLPYYGLYYYKQAHMVRPN----D------PRMLTALGEAFEKQEKISEAMKCYNKSRAIG------DADGKAL 215 (349)
Q Consensus 152 ~~~~~~~~~~~A~~~~~~~~~~~~~----~------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~------~~~~~~~ 215 (349)
..+....++++|+-+..++.++... + ..+++.++..+..+|....|.++.+++.++. +-.....
T Consensus 170 slf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~ 249 (518)
T KOG1941|consen 170 SLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCL 249 (518)
T ss_pred HHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHH
Confidence 9999999999999999999887332 2 2467788999999999999999999998772 3345667
Q ss_pred HHHHHHHHhcCcHHHHHHHHHHHHhcccccCCCCCCcchHHHHHHHHHHHHHhCCHHH-----HHHHHHHHHcccCC---
Q psy9209 216 FKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDT-----AYKCAQKCLQHEET--- 287 (349)
Q Consensus 216 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-----A~~~~~~a~~~~~~--- 287 (349)
..+|.+|...|+.+.|..-|+++...... ..+......++...+.++....-..+ |+++-++++++...
T Consensus 250 ~~~aDIyR~~gd~e~af~rYe~Am~~m~~---~gdrmgqv~al~g~Akc~~~~r~~~k~~~Crale~n~r~levA~~IG~ 326 (518)
T KOG1941|consen 250 LCFADIYRSRGDLERAFRRYEQAMGTMAS---LGDRMGQVEALDGAAKCLETLRLQNKICNCRALEFNTRLLEVASSIGA 326 (518)
T ss_pred HHHHHHHHhcccHhHHHHHHHHHHHHHhh---hhhhHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHhhh
Confidence 78999999999999999999999887665 44555667788888888776654444 88888888876532
Q ss_pred ---hHHHHHHHHHHHHHcCCCCCchhHHHHh
Q psy9209 288 ---AEEAKSLLRSIAQKRQPDESSSQPMECA 315 (349)
Q Consensus 288 ---~~~~~~~l~~~~~~~~~~~~A~~~~~~a 315 (349)
.-..+..++.+|..+|.-++-...+.++
T Consensus 327 K~~vlK~hcrla~iYrs~gl~d~~~~h~~ra 357 (518)
T KOG1941|consen 327 KLSVLKLHCRLASIYRSKGLQDELRAHVVRA 357 (518)
T ss_pred hHHHHHHHHHHHHHHHhccchhHHHHHHHHH
Confidence 2355677899999998887766666655
No 117
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.59 E-value=3.4e-12 Score=120.90 Aligned_cols=279 Identities=13% Similarity=-0.014 Sum_probs=205.2
Q ss_pred hhhhHHhhCcHHHHHHHHHHHHHhccccCCCCCcchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhch---HHHHHH
Q psy9209 2 RNKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETA---EEAKSL 78 (349)
Q Consensus 2 ~a~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~---~~~~~~ 78 (349)
++.++...|++++|...+++++...+.. +......+...+|.++...|++++|...+++++...... ......
T Consensus 458 ~a~~~~~~g~~~~A~~~~~~al~~~~~~----~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~ 533 (903)
T PRK04841 458 RAQVAINDGDPEEAERLAELALAELPLT----WYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWS 533 (903)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcCCCc----cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHH
Confidence 3566778999999999999998533221 111122467789999999999999999999998753321 111224
Q ss_pred HHHHHHhcCCCcchHHHHHHHHHHHhhCcc--------cHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCc-----ccHH
Q psy9209 79 LRSIAQKRQPDESSSQAVLYFQRALKLNPN--------YLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINN-----LDYR 145 (349)
Q Consensus 79 l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~--------~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-----~~~~ 145 (349)
+..++..+...|++++|...+++++..... ....+..+|.++...|++++|...+.+++.... ....
T Consensus 534 ~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~ 613 (903)
T PRK04841 534 LLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQ 613 (903)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHH
Confidence 456667777789999999999999876321 123456788999999999999999999987532 1345
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCh---HHHH----HHHHHHHHhhCHHHHHHHHHHHHccccccH----HH
Q psy9209 146 AWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDP---RMLT----ALGEAFEKQEKISEAMKCYNKSRAIGDADG----KA 214 (349)
Q Consensus 146 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~----~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~----~~ 214 (349)
.+..++.++...|++++|...+.++..+.+... .... .....+...|+.+.|..++.......+... ..
T Consensus 614 ~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~ 693 (903)
T PRK04841 614 CLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQ 693 (903)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHH
Confidence 566789999999999999999999977533221 1111 122445567899999999877665432222 22
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCCCCCcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHcccCC
Q psy9209 215 LFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEET 287 (349)
Q Consensus 215 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 287 (349)
+..++.++...|++++|...+++++..... .........++..+|.++...|+.++|...+.++++....
T Consensus 694 ~~~~a~~~~~~g~~~~A~~~l~~al~~~~~---~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~~ 763 (903)
T PRK04841 694 WRNIARAQILLGQFDEAEIILEELNENARS---LRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLANR 763 (903)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHH---hCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCc
Confidence 567899999999999999999999987544 2222335678889999999999999999999999987644
No 118
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.59 E-value=2.2e-13 Score=95.97 Aligned_cols=108 Identities=13% Similarity=0.082 Sum_probs=102.6
Q ss_pred HHHhC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhCHHHHHHHHHHHHccccccHHH
Q psy9209 136 AIEIN-NLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKA 214 (349)
Q Consensus 136 a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~ 214 (349)
...+. ++..+..+.+|..+...|++++|...|+-+..++|.+...|+++|.++..+|++.+|+..|.+++.++|+++..
T Consensus 26 l~~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~ 105 (157)
T PRK15363 26 LLDDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQA 105 (157)
T ss_pred HHCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchH
Confidence 34456 77888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHhccc
Q psy9209 215 LFKLAKLYDKLNETEAAADLFMEFVSKLD 243 (349)
Q Consensus 215 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 243 (349)
++++|.++...|+.+.|.+.|+.++....
T Consensus 106 ~~~ag~c~L~lG~~~~A~~aF~~Ai~~~~ 134 (157)
T PRK15363 106 PWAAAECYLACDNVCYAIKALKAVVRICG 134 (157)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999873
No 119
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=99.54 E-value=5.6e-12 Score=98.77 Aligned_cols=166 Identities=13% Similarity=-0.018 Sum_probs=107.5
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHhCcccHHH---HHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCh---HHHHH
Q psy9209 110 LGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRA---WYGLGQTYEILRLPYYGLYYYKQAHMVRPNDP---RMLTA 183 (349)
Q Consensus 110 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~---~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~ 183 (349)
+..++..|..+...|++++|+..|++++...|..+.+ .+.+|.++.+.+++++|+..+++.++.+|+++ .+++.
T Consensus 32 ~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~ 111 (243)
T PRK10866 32 PSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYM 111 (243)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHH
Confidence 3445555555555556666666665555555544322 35555555555666666666665555555543 34445
Q ss_pred HHHHHHHhh------------------CHHHHHHHHHHHHcccccc-----------------HHHHHHHHHHHHhcCcH
Q psy9209 184 LGEAFEKQE------------------KISEAMKCYNKSRAIGDAD-----------------GKALFKLAKLYDKLNET 228 (349)
Q Consensus 184 l~~~~~~~~------------------~~~~A~~~~~~a~~~~~~~-----------------~~~~~~l~~~~~~~~~~ 228 (349)
+|.++...+ ...+|+..|++.++..|++ ..--+.+|..|.+.|.+
T Consensus 112 ~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~~y 191 (243)
T PRK10866 112 RGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKRGAY 191 (243)
T ss_pred HHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCch
Confidence 554432222 1234555566666655543 12224678889999999
Q ss_pred HHHHHHHHHHHhcccccCCCCCCcchHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q psy9209 229 EAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKC 281 (349)
Q Consensus 229 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 281 (349)
..|+.-++.+++..|+ ++...+++..++..|...|..++|.......
T Consensus 192 ~AA~~r~~~v~~~Yp~------t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 192 VAVVNRVEQMLRDYPD------TQATRDALPLMENAYRQLQLNAQADKVAKII 238 (243)
T ss_pred HHHHHHHHHHHHHCCC------CchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 9999999999999998 6668999999999999999999998876554
No 120
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=99.53 E-value=8.2e-12 Score=102.31 Aligned_cols=153 Identities=18% Similarity=0.056 Sum_probs=118.0
Q ss_pred cccHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHH
Q psy9209 107 PNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGE 186 (349)
Q Consensus 107 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 186 (349)
|....+++..+..++..|++++|...+...+...|+++..+...+.++...++.++|.+.+++++...|+.+..+.++|.
T Consensus 303 ~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~ 382 (484)
T COG4783 303 RGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQ 382 (484)
T ss_pred ccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHH
Confidence 55667777888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHhhCHHHHHHHHHHHHccccccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCCCCCcchHHHHHHHHHHHH
Q psy9209 187 AFEKQEKISEAMKCYNKSRAIGDADGKALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHL 266 (349)
Q Consensus 187 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 266 (349)
++.+.|++.+|+..++..+..+|+++..|..++..|..+|+..+|. ...+..+.
T Consensus 383 all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~--------------------------~A~AE~~~ 436 (484)
T COG4783 383 ALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEAL--------------------------LARAEGYA 436 (484)
T ss_pred HHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHH--------------------------HHHHHHHH
Confidence 8888888888888888888888888888888888888777754443 33455555
Q ss_pred HhCCHHHHHHHHHHHHccc
Q psy9209 267 KANNLDTAYKCAQKCLQHE 285 (349)
Q Consensus 267 ~~g~~~~A~~~~~~a~~~~ 285 (349)
..|++++|+..+..+.+..
T Consensus 437 ~~G~~~~A~~~l~~A~~~~ 455 (484)
T COG4783 437 LAGRLEQAIIFLMRASQQV 455 (484)
T ss_pred hCCCHHHHHHHHHHHHHhc
Confidence 6677777777777776554
No 121
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=99.53 E-value=6.3e-12 Score=96.31 Aligned_cols=160 Identities=18% Similarity=0.096 Sum_probs=103.8
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHhCccc---HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCh---HHHHH
Q psy9209 110 LGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLD---YRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDP---RMLTA 183 (349)
Q Consensus 110 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~ 183 (349)
+..++..|..++..|++.+|+..|++++...|.. +.+.+.+|.++...|+++.|+..+++.++..|+++ .+++.
T Consensus 5 ~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~ 84 (203)
T PF13525_consen 5 AEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYM 84 (203)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHH
Confidence 3455666666666666666666666666654443 45566666666666666666666666666666554 35555
Q ss_pred HHHHHHHhh-----------CHHHHHHHHHHHHccccccH-----------------HHHHHHHHHHHhcCcHHHHHHHH
Q psy9209 184 LGEAFEKQE-----------KISEAMKCYNKSRAIGDADG-----------------KALFKLAKLYDKLNETEAAADLF 235 (349)
Q Consensus 184 l~~~~~~~~-----------~~~~A~~~~~~a~~~~~~~~-----------------~~~~~l~~~~~~~~~~~~A~~~~ 235 (349)
+|.++.... ...+|+..|+..+...|++. .--+.+|..|.+.|.+..|+..+
T Consensus 85 ~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r~ 164 (203)
T PF13525_consen 85 LGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIRF 164 (203)
T ss_dssp HHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHH
T ss_pred HHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHH
Confidence 555544332 23466666777766666542 22356788999999999999999
Q ss_pred HHHHhcccccCCCCCCcchHHHHHHHHHHHHHhCCHHHHH
Q psy9209 236 MEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAY 275 (349)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 275 (349)
+.+++..|+ ++....++..++..|.+.|..+.|.
T Consensus 165 ~~v~~~yp~------t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 165 QYVIENYPD------TPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHHHHSTT------SHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHCCC------CchHHHHHHHHHHHHHHhCChHHHH
Confidence 999999998 5667889999999999999988554
No 122
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=99.51 E-value=1e-11 Score=101.71 Aligned_cols=143 Identities=16% Similarity=0.121 Sum_probs=130.3
Q ss_pred CcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhCHHHHHHHHHHHHccccccHHHHHHHH
Q psy9209 140 NNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKLA 219 (349)
Q Consensus 140 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~ 219 (349)
.|....+++..+..++..|++++|+..+...+...|+++..+...+.++...++..+|.+.+++++..+|..+....++|
T Consensus 302 ~~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a 381 (484)
T COG4783 302 KRGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLA 381 (484)
T ss_pred CccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHH
Confidence 36778899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCcHHHHHHHHHHHHhcccccCCCCCCcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHcccCChHHH
Q psy9209 220 KLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEA 291 (349)
Q Consensus 220 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 291 (349)
..+.+.|++.+|+..++..+..+|+ ++..|..|+..|..+|+..+|.....+..........+
T Consensus 382 ~all~~g~~~eai~~L~~~~~~~p~---------dp~~w~~LAqay~~~g~~~~a~~A~AE~~~~~G~~~~A 444 (484)
T COG4783 382 QALLKGGKPQEAIRILNRYLFNDPE---------DPNGWDLLAQAYAELGNRAEALLARAEGYALAGRLEQA 444 (484)
T ss_pred HHHHhcCChHHHHHHHHHHhhcCCC---------CchHHHHHHHHHHHhCchHHHHHHHHHHHHhCCCHHHH
Confidence 9999999999999999999999998 89999999999999999998887766655554433333
No 123
>KOG3785|consensus
Probab=99.51 E-value=1.5e-11 Score=96.75 Aligned_cols=288 Identities=12% Similarity=-0.004 Sum_probs=183.3
Q ss_pred HHhhCcHHHHHHHHHHHHHhccccCCCCCcchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhchHHHHHHHHHHHHh
Q psy9209 6 YDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQK 85 (349)
Q Consensus 6 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~ 85 (349)
+....||..|+..++-... . +.+.. ...-..+|.+++..|+|++|...|+-+...+.-+.+.+..++..
T Consensus 32 fls~rDytGAislLefk~~-~-----~~EEE--~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc--- 100 (557)
T KOG3785|consen 32 FLSNRDYTGAISLLEFKLN-L-----DREEE--DSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACC--- 100 (557)
T ss_pred HHhcccchhHHHHHHHhhc-c-----chhhh--HHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHH---
Confidence 3456778888887765541 1 11111 13455688888888888888888888876544444444334333
Q ss_pred cCCCcchHHHHHHHHHHHhhCcccHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHHHHHH
Q psy9209 86 RQPDESSSQAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLY 165 (349)
Q Consensus 86 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 165 (349)
++-.|.+.+|.....++ |+.+-....+-.+-.+.|+-++- -.|.+.+. +..+-...++.+.+..-.|++|+.
T Consensus 101 ~FyLg~Y~eA~~~~~ka----~k~pL~~RLlfhlahklndEk~~-~~fh~~Lq---D~~EdqLSLAsvhYmR~HYQeAId 172 (557)
T KOG3785|consen 101 KFYLGQYIEAKSIAEKA----PKTPLCIRLLFHLAHKLNDEKRI-LTFHSSLQ---DTLEDQLSLASVHYMRMHYQEAID 172 (557)
T ss_pred HHHHHHHHHHHHHHhhC----CCChHHHHHHHHHHHHhCcHHHH-HHHHHHHh---hhHHHHHhHHHHHHHHHHHHHHHH
Confidence 33348888887765553 44454444444444555553332 23333332 123445667777777777888888
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHHHhhCHHHHHHHHHHHHccccccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhccc--
Q psy9209 166 YYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKLAKLYDKLNETEAAADLFMEFVSKLD-- 243 (349)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-- 243 (349)
.|++.+.-+|+....-..++.||.++.-++-+.+.+.--+...|+++.+....+....+.=+-..|..-.........
T Consensus 173 vYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~ 252 (557)
T KOG3785|consen 173 VYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQE 252 (557)
T ss_pred HHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhccccc
Confidence 888888888887777778888888888888888888888888887777766666555543222222222211111000
Q ss_pred ----------------cc-CCC----CCCcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHcccCChHHHHHHHHHHHHHc
Q psy9209 244 ----------------TF-AAP----PDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKR 302 (349)
Q Consensus 244 ----------------~~-~~~----~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~ 302 (349)
+. +.. ..-...+++..+|+..|..+++..+|....+ .++|..|.-+...|.+....
T Consensus 253 ~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~K---dl~PttP~EyilKgvv~aal 329 (557)
T KOG3785|consen 253 YPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCK---DLDPTTPYEYILKGVVFAAL 329 (557)
T ss_pred chhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHh---hcCCCChHHHHHHHHHHHHh
Confidence 00 000 0111257888999999999999999988765 46888888889999999999
Q ss_pred CCCCCchhHHHHh
Q psy9209 303 QPDESSSQPMECA 315 (349)
Q Consensus 303 ~~~~~A~~~~~~a 315 (349)
|+--...+.++.+
T Consensus 330 GQe~gSreHlKiA 342 (557)
T KOG3785|consen 330 GQETGSREHLKIA 342 (557)
T ss_pred hhhcCcHHHHHHH
Confidence 9887777766654
No 124
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.50 E-value=9e-13 Score=109.66 Aligned_cols=108 Identities=16% Similarity=0.079 Sum_probs=59.2
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhCH
Q psy9209 115 LLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKI 194 (349)
Q Consensus 115 ~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 194 (349)
..|...+..|++++|+..|+++++.+|.++.++..+|.++...|++++|+..+++++.++|.++.+++.+|.++..+|++
T Consensus 7 ~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~ 86 (356)
T PLN03088 7 DKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEY 86 (356)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCH
Confidence 33445555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHHHHHHccccccHHHHHHHHHHH
Q psy9209 195 SEAMKCYNKSRAIGDADGKALFKLAKLY 222 (349)
Q Consensus 195 ~~A~~~~~~a~~~~~~~~~~~~~l~~~~ 222 (349)
++|+..|++++.++|+++.+...++.+.
T Consensus 87 ~eA~~~~~~al~l~P~~~~~~~~l~~~~ 114 (356)
T PLN03088 87 QTAKAALEKGASLAPGDSRFTKLIKECD 114 (356)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 5555555555555555555555544443
No 125
>KOG1941|consensus
Probab=99.50 E-value=1.5e-11 Score=96.90 Aligned_cols=275 Identities=11% Similarity=0.063 Sum_probs=213.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhhhhchHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhCcc------cHHHHHH
Q psy9209 42 FKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDESSSQAVLYFQRALKLNPN------YLGVWTL 115 (349)
Q Consensus 42 ~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~ 115 (349)
....|.-++...++++|+..+.+.+..-.+....+..++.+..+...+|.+++++.+--..+....+ ..+++.+
T Consensus 9 q~~~g~~Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~ln 88 (518)
T KOG1941|consen 9 QIEKGLQLYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLN 88 (518)
T ss_pred HHHHHHhHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5567888889999999999999999877777777778888888888889999888776554443221 2457789
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHhCccc-----HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCh------HHHHHH
Q psy9209 116 LGHEYMEMKNTNAAIQCYRQAIEINNLD-----YRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDP------RMLTAL 184 (349)
Q Consensus 116 la~~~~~~~~~~~A~~~~~~a~~~~~~~-----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~------~~~~~l 184 (349)
++..+....++.+++.+-+-.+.+.... ..+...+|..+..++.++++++.|+++++...++. .++..+
T Consensus 89 lar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~L 168 (518)
T KOG1941|consen 89 LARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSL 168 (518)
T ss_pred HHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhH
Confidence 9999999999999999888887763222 35667799999999999999999999998744332 578899
Q ss_pred HHHHHHhhCHHHHHHHHHHHHccccc----------cHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCCCCCcch
Q psy9209 185 GEAFEKQEKISEAMKCYNKSRAIGDA----------DGKALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCG 254 (349)
Q Consensus 185 ~~~~~~~~~~~~A~~~~~~a~~~~~~----------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 254 (349)
|..+....++++|..+..++.++... ...+++.++..+..+|..-.|.++.+++.++.-. ..+.+..
T Consensus 169 gslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~---~Gdra~~ 245 (518)
T KOG1941|consen 169 GSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQ---HGDRALQ 245 (518)
T ss_pred HHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHH---hCChHHH
Confidence 99999999999999999999887322 2446788999999999999999999999887665 4456667
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHcccCC------hHHHHHHHHHHHHHcCCC-----CCchhHHHHhhhcC
Q psy9209 255 FFAFKYLANHHLKANNLDTAYKCAQKCLQHEET------AEEAKSLLRSIAQKRQPD-----ESSSQPMECAVVLD 319 (349)
Q Consensus 255 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~------~~~~~~~l~~~~~~~~~~-----~~A~~~~~~a~~~~ 319 (349)
.....-+|++|...|+.+.|..-|+.+...... ...+....+.+.....-. =.|++.-++++++.
T Consensus 246 arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~gdrmgqv~al~g~Akc~~~~r~~~k~~~Crale~n~r~levA 321 (518)
T KOG1941|consen 246 ARCLLCFADIYRSRGDLERAFRRYEQAMGTMASLGDRMGQVEALDGAAKCLETLRLQNKICNCRALEFNTRLLEVA 321 (518)
T ss_pred HHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHH
Confidence 888899999999999999999999999765321 234444455554433222 34777767766553
No 126
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.48 E-value=1.3e-12 Score=108.70 Aligned_cols=112 Identities=12% Similarity=0.026 Sum_probs=71.6
Q ss_pred HHHHHHHHHhhCHHHHHHHHHHHHccccccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCCCCCcchHHHHHHH
Q psy9209 182 TALGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYL 261 (349)
Q Consensus 182 ~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 261 (349)
...|..++..|++++|+.+|+++++.+|.++.++..+|.++..+|++++|+..+++++.++|. .+.+++.+
T Consensus 6 ~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~---------~~~a~~~l 76 (356)
T PLN03088 6 EDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPS---------LAKAYLRK 76 (356)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC---------CHHHHHHH
Confidence 344555666666666666666666666666666666666666666666666666666666665 56666666
Q ss_pred HHHHHHhCCHHHHHHHHHHHHcccCChHHHHHHHHHHHHHc
Q psy9209 262 ANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKR 302 (349)
Q Consensus 262 ~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~ 302 (349)
|.++..+|++++|+..|+++++++|++..+...++.|....
T Consensus 77 g~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl 117 (356)
T PLN03088 77 GTACMKLEEYQTAKAALEKGASLAPGDSRFTKLIKECDEKI 117 (356)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 66666666666666666666666666666666666554443
No 127
>KOG4340|consensus
Probab=99.48 E-value=1.1e-11 Score=95.22 Aligned_cols=275 Identities=13% Similarity=-0.010 Sum_probs=157.9
Q ss_pred HhhCcHHHHHHHHHHHHHhccccCCCCCcchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhchHHHHHHHHHHHHhc
Q psy9209 7 DKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKR 86 (349)
Q Consensus 7 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~ 86 (349)
.+..+|..||+++..-.+..+... ..+..+|.||+...+|..|..+|++.-...|......... +..+
T Consensus 21 I~d~ry~DaI~~l~s~~Er~p~~r---------AgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~---AQSL 88 (459)
T KOG4340|consen 21 IRDARYADAIQLLGSELERSPRSR---------AGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQ---AQSL 88 (459)
T ss_pred HHHhhHHHHHHHHHHHHhcCccch---------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHH---HHHH
Confidence 456678888888776664333222 4688899999999999999999999988888765543222 2333
Q ss_pred CCCcchHHHHHHHHHHHhhCcccHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHHHHHHH
Q psy9209 87 QPDESSSQAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYY 166 (349)
Q Consensus 87 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 166 (349)
++.+.+..|+.........+.-...+...-+-+.+..+++..+....++.-. .+......+.|.+.++.|+++.|++-
T Consensus 89 Y~A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~--en~Ad~~in~gCllykegqyEaAvqk 166 (459)
T KOG4340|consen 89 YKACIYADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPS--ENEADGQINLGCLLYKEGQYEAAVQK 166 (459)
T ss_pred HHhcccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccC--CCccchhccchheeeccccHHHHHHH
Confidence 4456777777766555432111223334444555566666665555444221 13455666667777777777777777
Q ss_pred HHHHHhcCCCChHHHHHHHHHHHHhhCHHHHHHHHHHHHcc----cccc-------------------------HHHHHH
Q psy9209 167 YKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAI----GDAD-------------------------GKALFK 217 (349)
Q Consensus 167 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~----~~~~-------------------------~~~~~~ 217 (349)
|+.+++...-.+-.-++++.++++.|+++.|+++..+.++. .|.. .+++..
T Consensus 167 FqaAlqvsGyqpllAYniALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNL 246 (459)
T KOG4340|consen 167 FQAALQVSGYQPLLAYNLALAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNL 246 (459)
T ss_pred HHHHHhhcCCCchhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhh
Confidence 77777766666666667777777777777777666655543 2210 223344
Q ss_pred HHHHHHhcCcHHHHHHHHHHHHhcccccCCCCCCcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHcccCChHHHHHHHHH
Q psy9209 218 LAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRS 297 (349)
Q Consensus 218 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~ 297 (349)
.+-++++.|+++.|.+.+.. +-|. ..+..++..+.+++..-. .+++.+...-++-.+.++|-.++...++-.
T Consensus 247 KaAIeyq~~n~eAA~eaLtD---mPPR----aE~elDPvTLHN~Al~n~-~~~p~~g~~KLqFLL~~nPfP~ETFANlLl 318 (459)
T KOG4340|consen 247 KAAIEYQLRNYEAAQEALTD---MPPR----AEEELDPVTLHNQALMNM-DARPTEGFEKLQFLLQQNPFPPETFANLLL 318 (459)
T ss_pred hhhhhhhcccHHHHHHHhhc---CCCc----ccccCCchhhhHHHHhcc-cCCccccHHHHHHHHhcCCCChHHHHHHHH
Confidence 45556666666666554322 2221 112223444555543322 244555555555555666655555555555
Q ss_pred HHHHcC
Q psy9209 298 IAQKRQ 303 (349)
Q Consensus 298 ~~~~~~ 303 (349)
++.+..
T Consensus 319 lyCKNe 324 (459)
T KOG4340|consen 319 LYCKNE 324 (459)
T ss_pred HHhhhH
Confidence 555443
No 128
>KOG4340|consensus
Probab=99.47 E-value=4.6e-12 Score=97.30 Aligned_cols=275 Identities=11% Similarity=0.024 Sum_probs=207.3
Q ss_pred HHhcCCHHHHHHHHHHHhhhhhchHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhCcccHHHHHHHHHHHHhcCChHH
Q psy9209 49 HLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDESSSQAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNA 128 (349)
Q Consensus 49 ~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 128 (349)
+.+..+|..|++++..-.+.+|.+... +..++.+|+...++..|-.+|++.-...|......+..+..+++.+.+..
T Consensus 20 lI~d~ry~DaI~~l~s~~Er~p~~rAg---LSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~AD 96 (459)
T KOG4340|consen 20 LIRDARYADAIQLLGSELERSPRSRAG---LSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYAD 96 (459)
T ss_pred HHHHhhHHHHHHHHHHHHhcCccchHH---HHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHH
Confidence 466778999999999988888877655 55556677778999999999999999999988888899999999999999
Q ss_pred HHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhCHHHHHHHHHHHHccc
Q psy9209 129 AIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIG 208 (349)
Q Consensus 129 A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 208 (349)
|+.....+.....-...+...-+-+.+..+++..+....++.-. .++.....+.|.+.++.|+++.|++-|+.+++..
T Consensus 97 ALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~--en~Ad~~in~gCllykegqyEaAvqkFqaAlqvs 174 (459)
T KOG4340|consen 97 ALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPS--ENEADGQINLGCLLYKEGQYEAAVQKFQAALQVS 174 (459)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccC--CCccchhccchheeeccccHHHHHHHHHHHHhhc
Confidence 99988777653222234445556677778888888776665421 2567888999999999999999999999999998
Q ss_pred cccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc----ccccCCC-----------C-----CCcchHHHHHHHHHHHHHh
Q psy9209 209 DADGKALFKLAKLYDKLNETEAAADLFMEFVSK----LDTFAAP-----------P-----DKTCGFFAFKYLANHHLKA 268 (349)
Q Consensus 209 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~-----------~-----~~~~~~~~~~~l~~~~~~~ 268 (349)
.-.+-.-++++.++++.|++..|+++..+.++. .|..+.. . ......+++...+.++++.
T Consensus 175 GyqpllAYniALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~ 254 (459)
T KOG4340|consen 175 GYQPLLAYNLALAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQL 254 (459)
T ss_pred CCCchhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhc
Confidence 888999999999999999999999988777664 3432200 0 0112355677778899999
Q ss_pred CCHHHHHHHHHHHHcccC--ChHHHHHHHHHHHHHcCCCCCchhHHHHhhhcCCCCCCccccC
Q psy9209 269 NNLDTAYKCAQKCLQHEE--TAEEAKSLLRSIAQKRQPDESSSQPMECAVVLDPVPPSTRSSK 329 (349)
Q Consensus 269 g~~~~A~~~~~~a~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~ 329 (349)
|+++.|.+.+...--... -++....+++..- ..+++-+..+-+.-.++++|-.++...++
T Consensus 255 ~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nPfP~ETFANl 316 (459)
T KOG4340|consen 255 RNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNPFPPETFANL 316 (459)
T ss_pred ccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcCCCChHHHHHH
Confidence 999999877654321111 2345555555433 35677778888888889998666666555
No 129
>KOG2047|consensus
Probab=99.46 E-value=5.7e-10 Score=94.50 Aligned_cols=299 Identities=13% Similarity=0.115 Sum_probs=207.7
Q ss_pred hhhHHhhCcHHHHHHHHHHHHHhccccCCCCCcchhHHHHHHH--HHHHHhcC-------------CHHHHHHHHHHHhh
Q psy9209 3 NKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYL--ANHHLKAN-------------NLDTAYKCAQKCLQ 67 (349)
Q Consensus 3 a~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~~~~~~~-------------~~~~A~~~~~~~l~ 67 (349)
|..|.+.|.+++|.++|++++....+.. +-...+.+|... ..+...++ +++-....|+..+.
T Consensus 255 AdYYIr~g~~ekarDvyeeai~~v~tvr---DFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~ 331 (835)
T KOG2047|consen 255 ADYYIRSGLFEKARDVYEEAIQTVMTVR---DFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMN 331 (835)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHhheehh---hHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHh
Confidence 6789999999999999999997654432 222222222211 11111111 22333444555443
Q ss_pred ------------hhhchHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHh-hCcc-----cHHHHHHHHHHHHhcCChHHH
Q psy9209 68 ------------HEETAEEAKSLLRSIAQKRQPDESSSQAVLYFQRALK-LNPN-----YLGVWTLLGHEYMEMKNTNAA 129 (349)
Q Consensus 68 ------------~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~-~~~~-----~~~~~~~la~~~~~~~~~~~A 129 (349)
.+|++...|..... ...|+..+-+..|..++. .+|. ....|...|..|...|+.+.|
T Consensus 332 rr~~~lNsVlLRQn~~nV~eW~kRV~-----l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~a 406 (835)
T KOG2047|consen 332 RRPLLLNSVLLRQNPHNVEEWHKRVK-----LYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDA 406 (835)
T ss_pred ccchHHHHHHHhcCCccHHHHHhhhh-----hhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHH
Confidence 35555555433222 224788888888888875 4554 346789999999999999999
Q ss_pred HHHHHHHHHhCc----ccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC------------------ChHHHHHHHHH
Q psy9209 130 IQCYRQAIEINN----LDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPN------------------DPRMLTALGEA 187 (349)
Q Consensus 130 ~~~~~~a~~~~~----~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~------------------~~~~~~~l~~~ 187 (349)
...|+++++..- +...+|...|..-.+..+++.|+++.+++...-.. +..+|..++..
T Consensus 407 Rvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~Dl 486 (835)
T KOG2047|consen 407 RVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADL 486 (835)
T ss_pred HHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHH
Confidence 999999988632 23678888898888999999999999988765211 22467778888
Q ss_pred HHHhhCHHHHHHHHHHHHccccccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCCCCCcchHHHHHHHHHHHHH
Q psy9209 188 FEKQEKISEAMKCYNKSRAIGDADGKALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLK 267 (349)
Q Consensus 188 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 267 (349)
....|-++.....|++.+.+.--.|.+-.+.|..+....-++++.+.|++.+.+.+- |...+.|...-..+.+
T Consensus 487 eEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~-------p~v~diW~tYLtkfi~ 559 (835)
T KOG2047|consen 487 EESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKW-------PNVYDIWNTYLTKFIK 559 (835)
T ss_pred HHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCC-------ccHHHHHHHHHHHHHH
Confidence 888899999999999999988778888899999999889999999999999887753 2255555543333222
Q ss_pred ---hCCHHHHHHHHHHHHcccCCh--HHHHHHHHHHHHHcCCCCCchhHHHHhh
Q psy9209 268 ---ANNLDTAYKCAQKCLQHEETA--EEAKSLLRSIAQKRQPDESSSQPMECAV 316 (349)
Q Consensus 268 ---~g~~~~A~~~~~~a~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 316 (349)
....+.|..+|+++++..|.. ...+...+.+...-|-...|+..|+++-
T Consensus 560 rygg~klEraRdLFEqaL~~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat 613 (835)
T KOG2047|consen 560 RYGGTKLERARDLFEQALDGCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERAT 613 (835)
T ss_pred HhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 237889999999999887632 3444555666666677777777777653
No 130
>KOG2047|consensus
Probab=99.45 E-value=8.7e-10 Score=93.40 Aligned_cols=301 Identities=11% Similarity=0.061 Sum_probs=204.9
Q ss_pred HhhCcHHHHHHHHHHHHHhccccCCCCCcchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhh-hchHHHHHHHHHHHHh
Q psy9209 7 DKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHE-ETAEEAKSLLRSIAQK 85 (349)
Q Consensus 7 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~l~~~~~~ 85 (349)
...|+..+-+..|.+++...++....... ...|...|..|...|+.+.|...|+++.+.. +.-.+........+..
T Consensus 358 l~e~~~~~~i~tyteAv~~vdP~ka~Gs~---~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waem 434 (835)
T KOG2047|consen 358 LYEGNAAEQINTYTEAVKTVDPKKAVGSP---GTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEM 434 (835)
T ss_pred hhcCChHHHHHHHHHHHHccCcccCCCCh---hhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHH
Confidence 45688999999999999877766543322 2579999999999999999999999999763 3333333334444455
Q ss_pred cCCCcchHHHHHHHHHHHhhCcc------------------cHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCcccHHHH
Q psy9209 86 RQPDESSSQAVLYFQRALKLNPN------------------YLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAW 147 (349)
Q Consensus 86 ~~~~~~~~~A~~~~~~~~~~~~~------------------~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~ 147 (349)
-.+..+++.|+++.+++...-.. ...+|...+......|-++.-...|++.+++.--.|...
T Consensus 435 Elrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii 514 (835)
T KOG2047|consen 435 ELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQII 514 (835)
T ss_pred HHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHH
Confidence 55668999999999998764211 234677788888899999999999999999888888899
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhcCC--CChHHHHHHHHH---HHHhhCHHHHHHHHHHHHcccccc--HHHHHHHHH
Q psy9209 148 YGLGQTYEILRLPYYGLYYYKQAHMVRP--NDPRMLTALGEA---FEKQEKISEAMKCYNKSRAIGDAD--GKALFKLAK 220 (349)
Q Consensus 148 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~l~~~---~~~~~~~~~A~~~~~~a~~~~~~~--~~~~~~l~~ 220 (349)
.+.|..+....-++++.+.|++.+.+.+ .-.++|...-.. -....+.+.|..+|+++++..|.. ..++...+.
T Consensus 515 ~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~Cpp~~aKtiyLlYA~ 594 (835)
T KOG2047|consen 515 INYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGCPPEHAKTIYLLYAK 594 (835)
T ss_pred HHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999854 334555543322 233457899999999999987742 235566677
Q ss_pred HHHhcCcHHHHHHHHHHHHhcccccCCCCCCcchHHHHHH-HHHHHHHhCCHHHHHHHHHHHHcccCChH--HHHHHHHH
Q psy9209 221 LYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKY-LANHHLKANNLDTAYKCAQKCLQHEETAE--EAKSLLRS 297 (349)
Q Consensus 221 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~g~~~~A~~~~~~a~~~~~~~~--~~~~~l~~ 297 (349)
+-..-|-...|+..|+++-..-+.. .....|.- +..+..--| ...-...|+++++.-|+.. +.....+.
T Consensus 595 lEEe~GLar~amsiyerat~~v~~a-------~~l~myni~I~kaae~yG-v~~TR~iYekaIe~Lp~~~~r~mclrFAd 666 (835)
T KOG2047|consen 595 LEEEHGLARHAMSIYERATSAVKEA-------QRLDMYNIYIKKAAEIYG-VPRTREIYEKAIESLPDSKAREMCLRFAD 666 (835)
T ss_pred HHHHhhHHHHHHHHHHHHHhcCCHH-------HHHHHHHHHHHHHHHHhC-CcccHHHHHHHHHhCChHHHHHHHHHHHH
Confidence 7777788888888888876543220 01111111 111111111 2233455666666555432 23334455
Q ss_pred HHHHcCCCCCchhHHHHhhhc
Q psy9209 298 IAQKRQPDESSSQPMECAVVL 318 (349)
Q Consensus 298 ~~~~~~~~~~A~~~~~~a~~~ 318 (349)
+....|..+.|...|.-.-++
T Consensus 667 lEtklGEidRARaIya~~sq~ 687 (835)
T KOG2047|consen 667 LETKLGEIDRARAIYAHGSQI 687 (835)
T ss_pred HhhhhhhHHHHHHHHHhhhhc
Confidence 556666666666666554443
No 131
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=99.45 E-value=5.7e-11 Score=93.12 Aligned_cols=178 Identities=13% Similarity=0.047 Sum_probs=121.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhchHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhCccc---HHHHHHH
Q psy9209 40 FAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDESSSQAVLYFQRALKLNPNY---LGVWTLL 116 (349)
Q Consensus 40 ~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~l 116 (349)
..++..|..++..|++++|+..|++++...|..+.+......++.++.+.+++++|+..+++.++..|++ +.+++.+
T Consensus 33 ~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~ 112 (243)
T PRK10866 33 SEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMR 112 (243)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHH
Confidence 4577788888888888888888888888888887776666777778888888888888888888887765 3566777
Q ss_pred HHHHHhcC---------------C---hHHHHHHHHHHHHhCcccHH---HHHHHHHHHHHhCCHHHHHHHHHHHHhcCC
Q psy9209 117 GHEYMEMK---------------N---TNAAIQCYRQAIEINNLDYR---AWYGLGQTYEILRLPYYGLYYYKQAHMVRP 175 (349)
Q Consensus 117 a~~~~~~~---------------~---~~~A~~~~~~a~~~~~~~~~---~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 175 (349)
|.++...+ + ..+|+..|++.++..|+..- +...+..+...+
T Consensus 113 g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~l------------------ 174 (243)
T PRK10866 113 GLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRL------------------ 174 (243)
T ss_pred HHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHH------------------
Confidence 77654433 1 24566777777777776532 111111111111
Q ss_pred CChHHHHHHHHHHHHhhCHHHHHHHHHHHHccccc---cHHHHHHHHHHHHhcCcHHHHHHHHHH
Q psy9209 176 NDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDA---DGKALFKLAKLYDKLNETEAAADLFME 237 (349)
Q Consensus 176 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~ 237 (349)
..--+.+|..|.+.|.|.-|+.-++.+++..|+ ..+++..++..|..+|..++|......
T Consensus 175 --a~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~ 237 (243)
T PRK10866 175 --AKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKI 237 (243)
T ss_pred --HHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 122235677777788888888888888877655 356777777888888888777766544
No 132
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=99.42 E-value=2e-11 Score=98.71 Aligned_cols=197 Identities=14% Similarity=0.157 Sum_probs=123.3
Q ss_pred cchHHHHHHHHHHHhhCc------ccHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCc------ccHHHHHHHHHHHHHh
Q psy9209 90 ESSSQAVLYFQRALKLNP------NYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINN------LDYRAWYGLGQTYEIL 157 (349)
Q Consensus 90 ~~~~~A~~~~~~~~~~~~------~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~------~~~~~~~~l~~~~~~~ 157 (349)
|++++|...|.++..... .-...+...+.++... ++++|+.+|++++++.- .-..++..+|.+|...
T Consensus 49 ~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~ 127 (282)
T PF14938_consen 49 KDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQ 127 (282)
T ss_dssp T-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCT
T ss_pred hccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHH
Confidence 455555555555443321 1123344445555444 77777777777776521 1245677788888887
Q ss_pred -CCHHHHHHHHHHHHhcCCCC------hHHHHHHHHHHHHhhCHHHHHHHHHHHHccccc-------cHHHHHHHHHHHH
Q psy9209 158 -RLPYYGLYYYKQAHMVRPND------PRMLTALGEAFEKQEKISEAMKCYNKSRAIGDA-------DGKALFKLAKLYD 223 (349)
Q Consensus 158 -~~~~~A~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-------~~~~~~~l~~~~~ 223 (349)
|++++|+++|+++++..... ..++..+|.++...|+|++|+..|+++....-. -...++..+.++.
T Consensus 128 ~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L 207 (282)
T PF14938_consen 128 LGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHL 207 (282)
T ss_dssp T--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHH
Confidence 88888888888888763221 246678899999999999999999988765211 1235567788899
Q ss_pred hcCcHHHHHHHHHHHHhcccccCCCCCCcchHHHHHHHHHHHHH--hCCHHHHHHHHHHHHcccCChHHH
Q psy9209 224 KLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLK--ANNLDTAYKCAQKCLQHEETAEEA 291 (349)
Q Consensus 224 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g~~~~A~~~~~~a~~~~~~~~~~ 291 (349)
..|++..|...+++....+|.. ...........|...+.. ...+++|+.-|.+..+++|-...+
T Consensus 208 ~~~D~v~A~~~~~~~~~~~~~F----~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~~ld~w~~~~ 273 (282)
T PF14938_consen 208 AMGDYVAARKALERYCSQDPSF----ASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSISRLDNWKTKM 273 (282)
T ss_dssp HTT-HHHHHHHHHHHGTTSTTS----TTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS---HHHHHH
T ss_pred HcCCHHHHHHHHHHHHhhCCCC----CCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHcccCccHHHHHHH
Confidence 9999999999999999888862 122345556666666554 346888888888777666544433
No 133
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=99.42 E-value=2.9e-11 Score=92.63 Aligned_cols=175 Identities=19% Similarity=0.117 Sum_probs=109.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhchHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhCcccH---HHHHHH
Q psy9209 40 FAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDESSSQAVLYFQRALKLNPNYL---GVWTLL 116 (349)
Q Consensus 40 ~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~l 116 (349)
..++..|..++..|++.+|+..|++++...|..+.+......++.++...|+++.|+..+++.++..|+++ .+++.+
T Consensus 6 ~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~ 85 (203)
T PF13525_consen 6 EALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYML 85 (203)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHH
Confidence 56788888899999999999999999888888777666677777778888888888888888888887754 567777
Q ss_pred HHHHHhcC-----------ChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHH
Q psy9209 117 GHEYMEMK-----------NTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALG 185 (349)
Q Consensus 117 a~~~~~~~-----------~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~ 185 (349)
|.++.... ...+|+..|+..+...|++..+- +|...+..+-. .-..--+.+|
T Consensus 86 g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~--------------~A~~~l~~l~~---~la~~e~~ia 148 (203)
T PF13525_consen 86 GLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAE--------------EAKKRLAELRN---RLAEHELYIA 148 (203)
T ss_dssp HHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHH--------------HHHHHHHHHHH---HHHHHHHHHH
T ss_pred HHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHH--------------HHHHHHHHHHH---HHHHHHHHHH
Confidence 77765442 23356666666666666542111 00000000000 0011224567
Q ss_pred HHHHHhhCHHHHHHHHHHHHcccccc---HHHHHHHHHHHHhcCcHHHH
Q psy9209 186 EAFEKQEKISEAMKCYNKSRAIGDAD---GKALFKLAKLYDKLNETEAA 231 (349)
Q Consensus 186 ~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~~~~l~~~~~~~~~~~~A 231 (349)
..|.+.|.+..|+..++.+++..|+. ..++..++.++..+|..+.|
T Consensus 149 ~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 149 RFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp HHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHH
Confidence 77777777777777777777776654 34566777777777776644
No 134
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=99.41 E-value=8.9e-11 Score=94.99 Aligned_cols=229 Identities=16% Similarity=0.103 Sum_probs=157.9
Q ss_pred HHHHHHHHHHHhcccc--------CCCCCcchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhh---chHHHHHHHHHH
Q psy9209 14 AAADLFMEFVSKLDTF--------AAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEE---TAEEAKSLLRSI 82 (349)
Q Consensus 14 ~A~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~---~~~~~~~~l~~~ 82 (349)
+|.+++.++-+.+.+. ...|+.......|...|..|...|++++|...|.++....- +...+...+...
T Consensus 2 ~a~~l~~~Aek~lk~~~~~~~~f~~~~~~~e~Aa~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~A 81 (282)
T PF14938_consen 2 EAEELIKEAEKKLKKSSGFFSFFGSKKPDYEEAADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEA 81 (282)
T ss_dssp HHHHHHHHHHHHCS---TCCCHH--SCHHHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhccccchhhhcCCCCCCHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3455555555444432 11234455567788899999999999999999999976532 222333445555
Q ss_pred HHhcCCCcchHHHHHHHHHHHhhCcc------cHHHHHHHHHHHHhc-CChHHHHHHHHHHHHhCcc------cHHHHHH
Q psy9209 83 AQKRQPDESSSQAVLYFQRALKLNPN------YLGVWTLLGHEYMEM-KNTNAAIQCYRQAIEINNL------DYRAWYG 149 (349)
Q Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~la~~~~~~-~~~~~A~~~~~~a~~~~~~------~~~~~~~ 149 (349)
+.++.+ .++++|+.++++++.+.-. -..++..+|.+|... |++++|+++|++++++... ...++..
T Consensus 82 a~~~k~-~~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~ 160 (282)
T PF14938_consen 82 ANCYKK-GDPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLK 160 (282)
T ss_dssp HHHHHH-TTHHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHh-hCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHH
Confidence 566544 4999999999999986322 245778999999999 9999999999999987322 2456788
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCCCh-------HHHHHHHHHHHHhhCHHHHHHHHHHHHcccccc-----HHHHHH
Q psy9209 150 LGQTYEILRLPYYGLYYYKQAHMVRPNDP-------RMLTALGEAFEKQEKISEAMKCYNKSRAIGDAD-----GKALFK 217 (349)
Q Consensus 150 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~-----~~~~~~ 217 (349)
+|.++...|+|++|+..|++.....-+++ ..++..+.|++..|++..|...+++....+|.. ......
T Consensus 161 ~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~ 240 (282)
T PF14938_consen 161 AADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLED 240 (282)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHH
Confidence 99999999999999999999987533221 355677889999999999999999999888753 334444
Q ss_pred HHHHHHh--cCcHHHHHHHHHHHHhccc
Q psy9209 218 LAKLYDK--LNETEAAADLFMEFVSKLD 243 (349)
Q Consensus 218 l~~~~~~--~~~~~~A~~~~~~~~~~~~ 243 (349)
+..++.. ...+++|+..|.+...+++
T Consensus 241 l~~A~~~~D~e~f~~av~~~d~~~~ld~ 268 (282)
T PF14938_consen 241 LLEAYEEGDVEAFTEAVAEYDSISRLDN 268 (282)
T ss_dssp HHHHHHTT-CCCHHHHCHHHTTSS---H
T ss_pred HHHHHHhCCHHHHHHHHHHHcccCccHH
Confidence 5554443 3457777777776655544
No 135
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=99.40 E-value=1.9e-11 Score=94.90 Aligned_cols=118 Identities=21% Similarity=0.282 Sum_probs=64.0
Q ss_pred hHHHHHHHHHHHhhCcccHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhC---CHHHHHHHHH
Q psy9209 92 SSQAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILR---LPYYGLYYYK 168 (349)
Q Consensus 92 ~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~---~~~~A~~~~~ 168 (349)
.+..+.-++.-+..+|++++-|..+|.+|+..|++..|...|.+++++.|++++.+..+|.++.... ...++...++
T Consensus 138 ~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~ 217 (287)
T COG4235 138 MEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLR 217 (287)
T ss_pred HHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHH
Confidence 3344444445555555555555555555555555555555555555555555555555555544332 2344555555
Q ss_pred HHHhcCCCChHHHHHHHHHHHHhhCHHHHHHHHHHHHcccc
Q psy9209 169 QAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGD 209 (349)
Q Consensus 169 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~ 209 (349)
+++..+|.+..+...+|..+++.|+|.+|+..++..+...|
T Consensus 218 ~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp 258 (287)
T COG4235 218 QALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLP 258 (287)
T ss_pred HHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCC
Confidence 55555555555555555555555555555555555555544
No 136
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=99.40 E-value=1.6e-11 Score=86.17 Aligned_cols=104 Identities=14% Similarity=0.089 Sum_probs=74.2
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHhCccc---HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCC---hHHHHHH
Q psy9209 111 GVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLD---YRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPND---PRMLTAL 184 (349)
Q Consensus 111 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~l 184 (349)
..++.+|..+...|++++|+..|.+++...|++ ..+++.+|.++...|++++|+.+|++++...|++ +.++..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 456677777777777777777777777776654 4566777777777777777777777777776664 4567777
Q ss_pred HHHHHHhhCHHHHHHHHHHHHccccccHHH
Q psy9209 185 GEAFEKQEKISEAMKCYNKSRAIGDADGKA 214 (349)
Q Consensus 185 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~ 214 (349)
|.++...|++++|+.++++++...|++..+
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 112 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIKRYPGSSAA 112 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHHHCcCChhH
Confidence 777777777777777777777777765543
No 137
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=99.39 E-value=1.6e-11 Score=86.15 Aligned_cols=105 Identities=13% Similarity=0.066 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHcccccc---HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCCCCCcchHH
Q psy9209 180 MLTALGEAFEKQEKISEAMKCYNKSRAIGDAD---GKALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFF 256 (349)
Q Consensus 180 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (349)
.++.+|..+...|++++|+..|++++..+|++ +.+++.+|.++...|++++|+..|++++...|+ .+....
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~------~~~~~~ 77 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPK------SPKAPD 77 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCC------CCcccH
Confidence 44555555555555555555555555554443 344555555555555555555555555555444 111244
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHcccCChHH
Q psy9209 257 AFKYLANHHLKANNLDTAYKCAQKCLQHEETAEE 290 (349)
Q Consensus 257 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 290 (349)
++..+|.++...|++++|..+++++++..|++..
T Consensus 78 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 111 (119)
T TIGR02795 78 ALLKLGMSLQELGDKEKAKATLQQVIKRYPGSSA 111 (119)
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHHHCcCChh
Confidence 5555555555555555555555555555555443
No 138
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=99.37 E-value=2.4e-11 Score=81.68 Aligned_cols=97 Identities=26% Similarity=0.406 Sum_probs=57.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhh
Q psy9209 113 WTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQE 192 (349)
Q Consensus 113 ~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 192 (349)
++.+|.++...|++++|+..++++++..|.+..++..+|.++...+++++|+.++++++...|.+..++..+|.++...|
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 44555556666666666666666666555555555566666666666666666666666655555555556666666666
Q ss_pred CHHHHHHHHHHHHcccc
Q psy9209 193 KISEAMKCYNKSRAIGD 209 (349)
Q Consensus 193 ~~~~A~~~~~~a~~~~~ 209 (349)
++++|...+.+++...|
T Consensus 83 ~~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 83 KYEEALEAYEKALELDP 99 (100)
T ss_pred hHHHHHHHHHHHHccCC
Confidence 66666666655555444
No 139
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=99.37 E-value=3.5e-11 Score=89.97 Aligned_cols=102 Identities=18% Similarity=0.267 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHhCccc---HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHH
Q psy9209 110 LGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLD---YRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGE 186 (349)
Q Consensus 110 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 186 (349)
..+++.+|..+...|++++|+.+|+++++..|+. ..++..+|.++...|++++|+..+++++...|.+...+..+|.
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 114 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAV 114 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 3344555555555555555555555555543332 2345555555555555555555555555555555555555555
Q ss_pred HHHHhhC--------------HHHHHHHHHHHHcccccc
Q psy9209 187 AFEKQEK--------------ISEAMKCYNKSRAIGDAD 211 (349)
Q Consensus 187 ~~~~~~~--------------~~~A~~~~~~a~~~~~~~ 211 (349)
++...|+ +++|+.++++++..+|++
T Consensus 115 ~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~ 153 (172)
T PRK02603 115 IYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNN 153 (172)
T ss_pred HHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchh
Confidence 5555554 445555555555555543
No 140
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=99.37 E-value=9.2e-11 Score=87.70 Aligned_cols=118 Identities=19% Similarity=0.222 Sum_probs=88.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhchHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhCcccHHHHHHHHHH
Q psy9209 40 FAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDESSSQAVLYFQRALKLNPNYLGVWTLLGHE 119 (349)
Q Consensus 40 ~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 119 (349)
.+++.+|..+...|++++|+.+|++++...|+.......+..++.++...|++++|+..+++++...|.+...+..+|.+
T Consensus 36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 115 (172)
T PRK02603 36 FVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVI 115 (172)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 56788888888888888888888888887766443333455566667777888888888888888888888888888888
Q ss_pred HHhcCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCC
Q psy9209 120 YMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPND 177 (349)
Q Consensus 120 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 177 (349)
+...|+...+...+.+++. .+++|++++++++..+|++
T Consensus 116 ~~~~g~~~~a~~~~~~A~~--------------------~~~~A~~~~~~a~~~~p~~ 153 (172)
T PRK02603 116 YHKRGEKAEEAGDQDEAEA--------------------LFDKAAEYWKQAIRLAPNN 153 (172)
T ss_pred HHHcCChHhHhhCHHHHHH--------------------HHHHHHHHHHHHHhhCchh
Confidence 8888877666655555432 2677788888888877776
No 141
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=99.36 E-value=7.2e-11 Score=91.70 Aligned_cols=122 Identities=16% Similarity=0.116 Sum_probs=102.7
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhCHHHHHHHHHHHHccccccHHHHHHHHHHHHhcC---cHHHHHHHHH
Q psy9209 160 PYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKLAKLYDKLN---ETEAAADLFM 236 (349)
Q Consensus 160 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~---~~~~A~~~~~ 236 (349)
.+.-+.-++.-+..+|++.+-|..+|.+|+.+|++..|...|.+++++.|++++++..+|.++..+. ...++...++
T Consensus 138 ~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~ 217 (287)
T COG4235 138 MEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLR 217 (287)
T ss_pred HHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHH
Confidence 4555666777788899999999999999999999999999999999999999999999888876553 3467888999
Q ss_pred HHHhcccccCCCCCCcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHcccCChHH
Q psy9209 237 EFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEE 290 (349)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 290 (349)
+++..+|. +..+.+.||..++..|++.+|...++..+...|.+..
T Consensus 218 ~al~~D~~---------~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~ 262 (287)
T COG4235 218 QALALDPA---------NIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDP 262 (287)
T ss_pred HHHhcCCc---------cHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCc
Confidence 99999888 7899999999999999999999999999888765433
No 142
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=99.35 E-value=7.4e-12 Score=78.16 Aligned_cols=67 Identities=25% Similarity=0.418 Sum_probs=43.9
Q ss_pred cHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhC-CHHHHHHHHHHHHhcCC
Q psy9209 109 YLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILR-LPYYGLYYYKQAHMVRP 175 (349)
Q Consensus 109 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~~ 175 (349)
++..|..+|.++...|++++|+..|+++++.+|+++.+++++|.++..+| ++++|+..++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 34566666666666666666666666666666666666666666666666 56666666666666655
No 143
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=99.35 E-value=7e-11 Score=88.05 Aligned_cols=98 Identities=17% Similarity=0.076 Sum_probs=65.3
Q ss_pred hHHHHHHHHHHHhhCccc--HHHHHHHHHHHHhcCChHHHHHHHHHHHHhCcc---cHHHHHHHHHHHHHhCCHHHHHHH
Q psy9209 92 SSQAVLYFQRALKLNPNY--LGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNL---DYRAWYGLGQTYEILRLPYYGLYY 166 (349)
Q Consensus 92 ~~~A~~~~~~~~~~~~~~--~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~ 166 (349)
+..+...+...++..+.. ...++.+|.++...|++++|+..|++++.+.|+ .+.++.++|.++...|++++|+..
T Consensus 15 ~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~ 94 (168)
T CHL00033 15 FTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEY 94 (168)
T ss_pred cccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHH
Confidence 344444444443333333 455677777777777777777777777776554 234677777777777777777777
Q ss_pred HHHHHhcCCCChHHHHHHHHHHH
Q psy9209 167 YKQAHMVRPNDPRMLTALGEAFE 189 (349)
Q Consensus 167 ~~~~~~~~~~~~~~~~~l~~~~~ 189 (349)
+++++.+.|.....+..+|.++.
T Consensus 95 ~~~Al~~~~~~~~~~~~la~i~~ 117 (168)
T CHL00033 95 YFQALERNPFLPQALNNMAVICH 117 (168)
T ss_pred HHHHHHhCcCcHHHHHHHHHHHH
Confidence 77777777777777777777776
No 144
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=99.35 E-value=3.5e-11 Score=80.85 Aligned_cols=98 Identities=27% Similarity=0.334 Sum_probs=93.6
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhCHHHHHHHHHHHHccccccHHHHHHHHHHHHhc
Q psy9209 146 AWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKLAKLYDKL 225 (349)
Q Consensus 146 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~ 225 (349)
+++.+|.++...|++++|+..++++++..|.++.++..+|.++...|++++|+.++++++...|.+..++..+|.++...
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence 57889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcHHHHHHHHHHHHhccc
Q psy9209 226 NETEAAADLFMEFVSKLD 243 (349)
Q Consensus 226 ~~~~~A~~~~~~~~~~~~ 243 (349)
|++++|...+.+++...|
T Consensus 82 ~~~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 82 GKYEEALEAYEKALELDP 99 (100)
T ss_pred HhHHHHHHHHHHHHccCC
Confidence 999999999999988766
No 145
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=99.34 E-value=1.9e-10 Score=83.26 Aligned_cols=115 Identities=13% Similarity=-0.019 Sum_probs=51.1
Q ss_pred cCChHHHHHHHHHHHHhCccc---HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCC---hHHHHHHHHHHHHhhCHHH
Q psy9209 123 MKNTNAAIQCYRQAIEINNLD---YRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPND---PRMLTALGEAFEKQEKISE 196 (349)
Q Consensus 123 ~~~~~~A~~~~~~a~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~ 196 (349)
.++...+...+++.+...|+. ..+.+.+|.++...|++++|...|+.++...|+. +.+...++.++...|++++
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~ 103 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDE 103 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 344444444444444444443 2333444444444444444444444444443322 1234444445555555555
Q ss_pred HHHHHHHHHccccccHHHHHHHHHHHHhcCcHHHHHHHHHHH
Q psy9209 197 AMKCYNKSRAIGDADGKALFKLAKLYDKLNETEAAADLFMEF 238 (349)
Q Consensus 197 A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 238 (349)
|+..++. +...+..+.++..+|.++...|++++|+..|+++
T Consensus 104 Al~~L~~-~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 104 ALATLQQ-IPDEAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHh-ccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 5544433 1222223344444555555555555555555443
No 146
>PRK15331 chaperone protein SicA; Provisional
Probab=99.34 E-value=7.8e-11 Score=83.57 Aligned_cols=106 Identities=13% Similarity=0.086 Sum_probs=96.7
Q ss_pred HHhhCcccHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHH
Q psy9209 102 ALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRML 181 (349)
Q Consensus 102 ~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 181 (349)
+..+.++..+..+..|.-++..|++++|...|+-....+|.+++.|..||.++...++|++|+..|..+..+.++++...
T Consensus 29 l~gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~ 108 (165)
T PRK15331 29 VHGIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPV 108 (165)
T ss_pred HhCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCcc
Confidence 34455666777888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhCHHHHHHHHHHHHcc
Q psy9209 182 TALGEAFEKQEKISEAMKCYNKSRAI 207 (349)
Q Consensus 182 ~~l~~~~~~~~~~~~A~~~~~~a~~~ 207 (349)
+..|.|+..+|+.+.|+.+|+.++..
T Consensus 109 f~agqC~l~l~~~~~A~~~f~~a~~~ 134 (165)
T PRK15331 109 FFTGQCQLLMRKAAKARQCFELVNER 134 (165)
T ss_pred chHHHHHHHhCCHHHHHHHHHHHHhC
Confidence 99999999999999999999999883
No 147
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=99.33 E-value=1.1e-10 Score=86.96 Aligned_cols=101 Identities=10% Similarity=0.077 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHHHccccc---cHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCCCCCcchH
Q psy9209 179 RMLTALGEAFEKQEKISEAMKCYNKSRAIGDA---DGKALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGF 255 (349)
Q Consensus 179 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 255 (349)
..++.+|.++...|++++|+..|++++.+.|+ .+.++.++|.++...|++++|+..+++++.+.|. ..
T Consensus 36 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~---------~~ 106 (168)
T CHL00033 36 FTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPF---------LP 106 (168)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC---------cH
Confidence 34455555555555555555555555554333 2235555555555555555555555555555554 34
Q ss_pred HHHHHHHHHHH-------HhCCHH-------HHHHHHHHHHcccCCh
Q psy9209 256 FAFKYLANHHL-------KANNLD-------TAYKCAQKCLQHEETA 288 (349)
Q Consensus 256 ~~~~~l~~~~~-------~~g~~~-------~A~~~~~~a~~~~~~~ 288 (349)
..+..+|.++. ..|+++ +|+.++++++..+|.+
T Consensus 107 ~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~ 153 (168)
T CHL00033 107 QALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGN 153 (168)
T ss_pred HHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCccc
Confidence 44444444444 455544 5566666667777643
No 148
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=99.33 E-value=1.1e-11 Score=77.44 Aligned_cols=66 Identities=21% Similarity=0.313 Sum_probs=38.6
Q ss_pred hHHHHHHHHHHHHhhCHHHHHHHHHHHHccccccHHHHHHHHHHHHhcC-cHHHHHHHHHHHHhccc
Q psy9209 178 PRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKLAKLYDKLN-ETEAAADLFMEFVSKLD 243 (349)
Q Consensus 178 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~~ 243 (349)
+..|..+|.++...|++++|+.+|+++++.+|+++.+++++|.++..+| ++++|+..++++++++|
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 4455555555555566666666666665555555555666666655555 45566666655555544
No 149
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=99.32 E-value=2.5e-10 Score=83.72 Aligned_cols=154 Identities=22% Similarity=0.158 Sum_probs=73.3
Q ss_pred CCcchHHHHHHHHHHHhhCcccHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHHHHHHHH
Q psy9209 88 PDESSSQAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYY 167 (349)
Q Consensus 88 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 167 (349)
..|-+.-|.--|.+++.+.|+.+.+++.+|..+...|+++.|.+.|...++++|...-+..+.|..++.-|++.-|.+-+
T Consensus 77 SlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~ 156 (297)
T COG4785 77 SLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDL 156 (297)
T ss_pred hhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHHH
Confidence 33444444444444444455444444445544444455555555555555555444444444444444444454444444
Q ss_pred HHHHhcCCCChH--HHHHHHH----------------------------HHHHhhCHHHHHHHHHHHHccccc-------
Q psy9209 168 KQAHMVRPNDPR--MLTALGE----------------------------AFEKQEKISEAMKCYNKSRAIGDA------- 210 (349)
Q Consensus 168 ~~~~~~~~~~~~--~~~~l~~----------------------------~~~~~~~~~~A~~~~~~a~~~~~~------- 210 (349)
.+-.+.+|++|. .|..+-. +-..+|+..+ ...++++.....+
T Consensus 157 ~~fYQ~D~~DPfR~LWLYl~E~k~dP~~A~tnL~qR~~~~d~e~WG~~iV~~yLgkiS~-e~l~~~~~a~a~~n~~~Ae~ 235 (297)
T COG4785 157 LAFYQDDPNDPFRSLWLYLNEQKLDPKQAKTNLKQRAEKSDKEQWGWNIVEFYLGKISE-ETLMERLKADATDNTSLAEH 235 (297)
T ss_pred HHHHhcCCCChHHHHHHHHHHhhCCHHHHHHHHHHHHHhccHhhhhHHHHHHHHhhccH-HHHHHHHHhhccchHHHHHH
Confidence 444444444441 1111100 0011122211 1222222222221
Q ss_pred cHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc
Q psy9209 211 DGKALFKLAKLYDKLNETEAAADLFMEFVSKL 242 (349)
Q Consensus 211 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 242 (349)
-.++++.+|..+...|+.++|...|+-++..+
T Consensus 236 LTEtyFYL~K~~l~~G~~~~A~~LfKLaiann 267 (297)
T COG4785 236 LTETYFYLGKYYLSLGDLDEATALFKLAVANN 267 (297)
T ss_pred HHHHHHHHHHHHhccccHHHHHHHHHHHHHHh
Confidence 24567778888888888888888887776643
No 150
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=99.32 E-value=2.5e-10 Score=99.07 Aligned_cols=138 Identities=14% Similarity=0.022 Sum_probs=114.5
Q ss_pred CcccHHHH--HHHHHHHHhcCC---hHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhC--------CHHHHHHHHHHHHh
Q psy9209 106 NPNYLGVW--TLLGHEYMEMKN---TNAAIQCYRQAIEINNLDYRAWYGLGQTYEILR--------LPYYGLYYYKQAHM 172 (349)
Q Consensus 106 ~~~~~~~~--~~la~~~~~~~~---~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~--------~~~~A~~~~~~~~~ 172 (349)
.|.++.+| +..|.-+...++ ...|+.+|+++++++|++..++-.++.++.... +...+.....+++.
T Consensus 333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~a 412 (517)
T PRK10153 333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVA 412 (517)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhh
Confidence 45565655 566776766554 779999999999999999999988888776542 23455666666666
Q ss_pred c--CCCChHHHHHHHHHHHHhhCHHHHHHHHHHHHccccccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccc
Q psy9209 173 V--RPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKLAKLYDKLNETEAAADLFMEFVSKLDT 244 (349)
Q Consensus 173 ~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 244 (349)
+ .|.++.++..+|......|++++|...+++++.++| +..+|..+|.++...|++++|+..|++++.++|.
T Consensus 413 l~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~ 485 (517)
T PRK10153 413 LPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPG 485 (517)
T ss_pred cccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 4 677788899999999999999999999999999999 5889999999999999999999999999999997
No 151
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=99.31 E-value=2.1e-10 Score=83.11 Aligned_cols=116 Identities=16% Similarity=0.003 Sum_probs=74.2
Q ss_pred CcchHHHHHHHHHHHhhCccc---HHHHHHHHHHHHhcCChHHHHHHHHHHHHhCccc---HHHHHHHHHHHHHhCCHHH
Q psy9209 89 DESSSQAVLYFQRALKLNPNY---LGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLD---YRAWYGLGQTYEILRLPYY 162 (349)
Q Consensus 89 ~~~~~~A~~~~~~~~~~~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~~~~l~~~~~~~~~~~~ 162 (349)
.++...+...+++.++..|+. ..+.+.+|.++...|++++|...|+.++...|+. ..+.+.++.++...|++++
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~ 103 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDE 103 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 356666666666666666665 3455666777777777777777777777655433 3456667777777777777
Q ss_pred HHHHHHHHHhcCCCChHHHHHHHHHHHHhhCHHHHHHHHHHHH
Q psy9209 163 GLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSR 205 (349)
Q Consensus 163 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 205 (349)
|+..++. +...+-.+.++..+|.++...|++++|+..|++++
T Consensus 104 Al~~L~~-~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 104 ALATLQQ-IPDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHh-ccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 7777655 22333344566667777777777777777776653
No 152
>PRK11906 transcriptional regulator; Provisional
Probab=99.31 E-value=2.7e-10 Score=94.05 Aligned_cols=150 Identities=17% Similarity=0.145 Sum_probs=122.3
Q ss_pred cchHHHHHHHHHHH---hhCcccHHHHHHHHHHHHhc---------CChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHh
Q psy9209 90 ESSSQAVLYFQRAL---KLNPNYLGVWTLLGHEYMEM---------KNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEIL 157 (349)
Q Consensus 90 ~~~~~A~~~~~~~~---~~~~~~~~~~~~la~~~~~~---------~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~ 157 (349)
...+.|+.+|.+++ .++|..+.++..++.++... ....+|....+++++++|.++.++..+|.+....
T Consensus 272 ~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~ 351 (458)
T PRK11906 272 ESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLS 351 (458)
T ss_pred HHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhh
Confidence 35678888999999 88999898888888887654 2345788889999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhCHHHHHHHHHHHHccccccHHHHHHHHHH-HHhcCcHHHHHHHHH
Q psy9209 158 RLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKLAKL-YDKLNETEAAADLFM 236 (349)
Q Consensus 158 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~-~~~~~~~~~A~~~~~ 236 (349)
++++.|...|++++.++|+.+.+++..|.+....|+.++|...++++++++|....+-...-.+ .+.....++|+..|-
T Consensus 352 ~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 431 (458)
T PRK11906 352 GQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPNPLKNNIKLYY 431 (458)
T ss_pred cchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCCchhhhHHHHh
Confidence 9999999999999999999999999999999999999999999999999999765443332222 334455778888775
Q ss_pred HHH
Q psy9209 237 EFV 239 (349)
Q Consensus 237 ~~~ 239 (349)
+-.
T Consensus 432 ~~~ 434 (458)
T PRK11906 432 KET 434 (458)
T ss_pred hcc
Confidence 543
No 153
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=99.31 E-value=1.1e-11 Score=80.49 Aligned_cols=78 Identities=15% Similarity=0.212 Sum_probs=31.2
Q ss_pred cchHHHHHHHHHHHhhCcc--cHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHHHHHHHH
Q psy9209 90 ESSSQAVLYFQRALKLNPN--YLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYY 167 (349)
Q Consensus 90 ~~~~~A~~~~~~~~~~~~~--~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 167 (349)
|+++.|+..++++++.+|. +...++.+|.++.+.|++++|+..+++ .+.+|.+....+.+|.++..+|++++|+..+
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l 81 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKAL 81 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 3444444444444444442 222333344444444444444444444 3333333333444444444444444444444
Q ss_pred H
Q psy9209 168 K 168 (349)
Q Consensus 168 ~ 168 (349)
+
T Consensus 82 ~ 82 (84)
T PF12895_consen 82 E 82 (84)
T ss_dssp H
T ss_pred h
Confidence 3
No 154
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=99.30 E-value=6.9e-09 Score=82.71 Aligned_cols=224 Identities=21% Similarity=0.178 Sum_probs=138.0
Q ss_pred cCCHHHHHHHHHHHhhhhhch--HHHHHHHHHHHHhcCCCcchHHHHHHHHHHHh--hCcccHHHHHHHHHHHHhcCChH
Q psy9209 52 ANNLDTAYKCAQKCLQHEETA--EEAKSLLRSIAQKRQPDESSSQAVLYFQRALK--LNPNYLGVWTLLGHEYMEMKNTN 127 (349)
Q Consensus 52 ~~~~~~A~~~~~~~l~~~~~~--~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~la~~~~~~~~~~ 127 (349)
.+.+..+...+...+...+.. ... ....+..+...+.+..+...+...+. ..+.....+...+..+...+++.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (291)
T COG0457 36 LGELAEALELLEEALELLPNSDLAGL---LLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYE 112 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccccchHH---HHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHH
Confidence 355555666666666555442 222 22222333344666777777666665 45666666667777777777777
Q ss_pred HHHHHHHHHHHhCcccHHHHHHHHH-HHHHhCCHHHHHHHHHHHHhcCC---CChHHHHHHHHHHHHhhCHHHHHHHHHH
Q psy9209 128 AAIQCYRQAIEINNLDYRAWYGLGQ-TYEILRLPYYGLYYYKQAHMVRP---NDPRMLTALGEAFEKQEKISEAMKCYNK 203 (349)
Q Consensus 128 ~A~~~~~~a~~~~~~~~~~~~~l~~-~~~~~~~~~~A~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 203 (349)
.++..+.+++...+.........+. ++...|+++.|...+.+++...| .........+..+...++++.|+..+.+
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 192 (291)
T COG0457 113 EALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEK 192 (291)
T ss_pred HHHHHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHH
Confidence 7777777777665555444444444 66677777777777777666554 2334445555556666677777777777
Q ss_pred HHccccc-cHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCCCCCcchHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q psy9209 204 SRAIGDA-DGKALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCL 282 (349)
Q Consensus 204 a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 282 (349)
++...+. ....+..++..+...++++.|...+..++...|. ....+..++..+...+.++++...+.+++
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (291)
T COG0457 193 ALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPD---------NAEALYNLALLLLELGRYEEALEALEKAL 263 (291)
T ss_pred HHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcc---------cHHHHhhHHHHHHHcCCHHHHHHHHHHHH
Confidence 7777666 4666666777777777777777777777666654 45555666666665556677777777766
Q ss_pred cccCC
Q psy9209 283 QHEET 287 (349)
Q Consensus 283 ~~~~~ 287 (349)
...|.
T Consensus 264 ~~~~~ 268 (291)
T COG0457 264 ELDPD 268 (291)
T ss_pred HhCcc
Confidence 66665
No 155
>KOG1070|consensus
Probab=99.29 E-value=9e-10 Score=100.79 Aligned_cols=215 Identities=16% Similarity=0.082 Sum_probs=106.4
Q ss_pred HHHHHHHHhhCcccHHHHHHHHHHHHhcCChHHHHHHHHHHHHh-Ccc----cHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q psy9209 96 VLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEI-NNL----DYRAWYGLGQTYEILRLPYYGLYYYKQA 170 (349)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~-~~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 170 (349)
.+-|++.+..+|+....|...-..+.+.++.++|.+..++|+.. ++. -..+|..+-.....-|.-+.-.+.|++|
T Consensus 1444 aeDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRA 1523 (1710)
T KOG1070|consen 1444 AEDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERA 1523 (1710)
T ss_pred HHHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHH
Confidence 33444455555555555555555555555555555555555542 221 1223333333333334444444455555
Q ss_pred HhcCCCChHHHHHHHHHHHHhhCHHHHHHHHHHHHccccccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCCCC
Q psy9209 171 HMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPD 250 (349)
Q Consensus 171 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 250 (349)
.+.. +...++..|..+|...+++++|.++++.+++.......+|..+|..++.+++-+.|...+.+|+...|.
T Consensus 1524 cqyc-d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk------ 1596 (1710)
T KOG1070|consen 1524 CQYC-DAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPK------ 1596 (1710)
T ss_pred HHhc-chHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcch------
Confidence 4432 112344445555555555555555555555554444555555555555555555555555555554443
Q ss_pred CcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHcccCChHHHHHHHHHHHHHcCCCCCchhHHHHhhhc
Q psy9209 251 KTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDESSSQPMECAVVL 318 (349)
Q Consensus 251 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 318 (349)
..+.......|.+-++.|+.+.+...|+..+...|...+.|..+.+.-.+.|+.+.+...|++++.+
T Consensus 1597 -~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l 1663 (1710)
T KOG1070|consen 1597 -QEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIEL 1663 (1710)
T ss_pred -hhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhc
Confidence 1134444445555555555555555555555555555555555555555555555555555555443
No 156
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=99.29 E-value=2.2e-11 Score=79.14 Aligned_cols=81 Identities=22% Similarity=0.285 Sum_probs=60.7
Q ss_pred cCChHHHHHHHHHHHHhCcc--cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhCHHHHHHH
Q psy9209 123 MKNTNAAIQCYRQAIEINNL--DYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKC 200 (349)
Q Consensus 123 ~~~~~~A~~~~~~a~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 200 (349)
.|+++.|+..++++++..|. +...++.+|.++...|++++|+.++++ ...+|.++...+.+|.++.++|++++|+..
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 57788888888888887774 455677778888888888888888877 667777777777778888888888888888
Q ss_pred HHHH
Q psy9209 201 YNKS 204 (349)
Q Consensus 201 ~~~a 204 (349)
|+++
T Consensus 81 l~~~ 84 (84)
T PF12895_consen 81 LEKA 84 (84)
T ss_dssp HHHH
T ss_pred HhcC
Confidence 7764
No 157
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=99.29 E-value=1.5e-07 Score=75.61 Aligned_cols=289 Identities=15% Similarity=0.046 Sum_probs=212.9
Q ss_pred hhCcHHHHHHHHHHHHHhccccCCCCCcchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhchHHHHHHHHHHHHhcC
Q psy9209 8 KLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQ 87 (349)
Q Consensus 8 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~ 87 (349)
-.||-..|.+.-.+.-+.+... ..| .+...-++.....|+++.|.+-|+.++. +|..-. .-+..+...-.
T Consensus 96 gAGda~lARkmt~~~~~llssD-qep------LIhlLeAQaal~eG~~~~Ar~kfeAMl~-dPEtRl--lGLRgLyleAq 165 (531)
T COG3898 96 GAGDASLARKMTARASKLLSSD-QEP------LIHLLEAQAALLEGDYEDARKKFEAMLD-DPETRL--LGLRGLYLEAQ 165 (531)
T ss_pred ccCchHHHHHHHHHHHhhhhcc-chH------HHHHHHHHHHHhcCchHHHHHHHHHHhc-ChHHHH--HhHHHHHHHHH
Confidence 3567777777766654333221 112 4566678888899999999999998876 343221 12333334445
Q ss_pred CCcchHHHHHHHHHHHhhCcccHHHHHHHHHHHHhcCChHHHHHHHHHHHHh---CcccH---H--HHHHHHHHHHHhCC
Q psy9209 88 PDESSSQAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEI---NNLDY---R--AWYGLGQTYEILRL 159 (349)
Q Consensus 88 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~---~~~~~---~--~~~~l~~~~~~~~~ 159 (349)
..|+.+.|..+.+++-...|..+.++...-...+..|+++.|+++.+..... .++.. . .+...+.. .-..+
T Consensus 166 r~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s-~ldad 244 (531)
T COG3898 166 RLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMS-LLDAD 244 (531)
T ss_pred hcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHH-HhcCC
Confidence 5799999999999999999999998888888889999999999999877653 22211 1 12222222 22346
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhCHHHHHHHHHHHHccccccHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Q psy9209 160 PYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKLAKLYDKLNETEAAADLFMEFV 239 (349)
Q Consensus 160 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 239 (349)
...|...-.++.++.|+....-..-+..++..|+..++-.+++.+.+..| ++.++ .+|....--+.++.-++++-
T Consensus 245 p~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~eP-HP~ia----~lY~~ar~gdta~dRlkRa~ 319 (531)
T COG3898 245 PASARDDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEP-HPDIA----LLYVRARSGDTALDRLKRAK 319 (531)
T ss_pred hHHHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCC-ChHHH----HHHHHhcCCCcHHHHHHHHH
Confidence 88899999999999999999999999999999999999999999999988 45543 33333333344555555544
Q ss_pred ---hcccccCCCCCCcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHcccCChHHHHHHHHHHHHHc-CCCCCchhHHHHh
Q psy9209 240 ---SKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKR-QPDESSSQPMECA 315 (349)
Q Consensus 240 ---~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~a 315 (349)
.+.|+ +.+.....+..-+.-|++..|..--+.+....|.. .++.+++.+.... |+-.+...++-++
T Consensus 320 ~L~slk~n---------naes~~~va~aAlda~e~~~ARa~Aeaa~r~~pre-s~~lLlAdIeeAetGDqg~vR~wlAqa 389 (531)
T COG3898 320 KLESLKPN---------NAESSLAVAEAALDAGEFSAARAKAEAAAREAPRE-SAYLLLADIEEAETGDQGKVRQWLAQA 389 (531)
T ss_pred HHHhcCcc---------chHHHHHHHHHHHhccchHHHHHHHHHHhhhCchh-hHHHHHHHHHhhccCchHHHHHHHHHH
Confidence 44555 89999999999999999999999999999988764 5667778887665 9999999999999
Q ss_pred hhcCCCCC
Q psy9209 316 VVLDPVPP 323 (349)
Q Consensus 316 ~~~~p~~~ 323 (349)
+.- |.+|
T Consensus 390 v~A-PrdP 396 (531)
T COG3898 390 VKA-PRDP 396 (531)
T ss_pred hcC-CCCC
Confidence 864 4433
No 158
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=99.28 E-value=5e-10 Score=97.18 Aligned_cols=123 Identities=12% Similarity=0.027 Sum_probs=76.4
Q ss_pred cchHHHHHHHHHHHhhCcccHHHHHHHHHHHHhcC--------ChHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHhCC
Q psy9209 90 ESSSQAVLYFQRALKLNPNYLGVWTLLGHEYMEMK--------NTNAAIQCYRQAIEI--NNLDYRAWYGLGQTYEILRL 159 (349)
Q Consensus 90 ~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~--------~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~ 159 (349)
++...|+.+|+++++++|++..++..++.++.... +...+.....+++.+ +|.++.++..+|......|+
T Consensus 356 ~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~ 435 (517)
T PRK10153 356 KSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNVLPRIYEILAVQALVKGK 435 (517)
T ss_pred HHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCC
Confidence 34566666666666666666666665555553321 233444445554443 45556666666666666677
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhCHHHHHHHHHHHHccccccHH
Q psy9209 160 PYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGK 213 (349)
Q Consensus 160 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~ 213 (349)
+++|...+++++.++| +..++..+|.++...|++++|++.|++++.++|..+.
T Consensus 436 ~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 436 TDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred HHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence 7777777777777776 3566677777777777777777777777777666553
No 159
>KOG0543|consensus
Probab=99.27 E-value=2e-10 Score=92.49 Aligned_cols=133 Identities=17% Similarity=0.184 Sum_probs=115.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHhCcc---------------cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC
Q psy9209 112 VWTLLGHEYMEMKNTNAAIQCYRQAIEINNL---------------DYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPN 176 (349)
Q Consensus 112 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~---------------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 176 (349)
.....|..+++.|+|..|...|++++..-+. ...++.+++.++.++++|.+|+...++++.+.|+
T Consensus 210 ~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~ 289 (397)
T KOG0543|consen 210 RKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPN 289 (397)
T ss_pred HHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCC
Confidence 3456788999999999999999998875221 1457889999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHhhCHHHHHHHHHHHHccccccHHHHHHHHHHHHhcCcHHHH-HHHHHHHHhcccc
Q psy9209 177 DPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKLAKLYDKLNETEAA-ADLFMEFVSKLDT 244 (349)
Q Consensus 177 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A-~~~~~~~~~~~~~ 244 (349)
+..+++..|.++..+|+++.|+..|++++++.|.|..+...+..+..+...+.+. .+.|.+++...+.
T Consensus 290 N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~k~~~ 358 (397)
T KOG0543|consen 290 NVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYANMFAKLAE 358 (397)
T ss_pred chhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 9999999999999999999999999999999999999999999888877766655 7888888876553
No 160
>KOG1070|consensus
Probab=99.27 E-value=1.4e-08 Score=93.38 Aligned_cols=198 Identities=12% Similarity=0.045 Sum_probs=123.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhh-hhhc----hHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhCcccHHHHHH
Q psy9209 41 AFKYLANHHLKANNLDTAYKCAQKCLQ-HEET----AEEAKSLLRSIAQKRQPDESSSQAVLYFQRALKLNPNYLGVWTL 115 (349)
Q Consensus 41 ~~~~l~~~~~~~~~~~~A~~~~~~~l~-~~~~----~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 115 (349)
.|......+++.++.++|.+..++++. +++. ....|..+.++-..| |.-+.-.+.|+++.+.... ..++..
T Consensus 1460 ~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~y---G~eesl~kVFeRAcqycd~-~~V~~~ 1535 (1710)
T KOG1070|consen 1460 LWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAY---GTEESLKKVFERACQYCDA-YTVHLK 1535 (1710)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhh---CcHHHHHHHHHHHHHhcch-HHHHHH
Confidence 455555556666666777777766663 2221 223444555554444 5555566666666654432 345666
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC--ChHHHHHHHHHHHHhhC
Q psy9209 116 LGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPN--DPRMLTALGEAFEKQEK 193 (349)
Q Consensus 116 la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~ 193 (349)
|..+|...+.+++|.++++.+++...+...+|..++..+.+..+-+.|...+.+|++.-|. +.......|.+-++.|+
T Consensus 1536 L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GD 1615 (1710)
T KOG1070|consen 1536 LLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGD 1615 (1710)
T ss_pred HHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCC
Confidence 6666666666677777776666665556666666666666666666666666666666665 44555566666666666
Q ss_pred HHHHHHHHHHHHccccccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc
Q psy9209 194 ISEAMKCYNKSRAIGDADGKALFKLAKLYDKLNETEAAADLFMEFVSKL 242 (349)
Q Consensus 194 ~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 242 (349)
.+.+...|+-.+...|...+.|.-+...-.+.|+.+-+...|++++.+.
T Consensus 1616 aeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~ 1664 (1710)
T KOG1070|consen 1616 AERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELK 1664 (1710)
T ss_pred chhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcC
Confidence 6666666666666666666666666666666666666666666666643
No 161
>PRK15331 chaperone protein SicA; Provisional
Probab=99.25 E-value=4.9e-10 Score=79.59 Aligned_cols=105 Identities=10% Similarity=0.051 Sum_probs=98.7
Q ss_pred HHhCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhCHHHHHHHHHHHHccccccHHHHH
Q psy9209 137 IEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKALF 216 (349)
Q Consensus 137 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~ 216 (349)
..+.++..+..+..|.-++..|++++|...|+-+...+|.+++.+..+|.++..+++|++|+..|..+..++++++...+
T Consensus 30 ~gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f 109 (165)
T PRK15331 30 HGIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVF 109 (165)
T ss_pred hCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccc
Confidence 34456667888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCcHHHHHHHHHHHHhc
Q psy9209 217 KLAKLYDKLNETEAAADLFMEFVSK 241 (349)
Q Consensus 217 ~l~~~~~~~~~~~~A~~~~~~~~~~ 241 (349)
..|.|+..+|+.+.|+..|+.++..
T Consensus 110 ~agqC~l~l~~~~~A~~~f~~a~~~ 134 (165)
T PRK15331 110 FTGQCQLLMRKAAKARQCFELVNER 134 (165)
T ss_pred hHHHHHHHhCCHHHHHHHHHHHHhC
Confidence 9999999999999999999999883
No 162
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=99.25 E-value=4.1e-11 Score=73.69 Aligned_cols=62 Identities=24% Similarity=0.374 Sum_probs=32.4
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCC
Q psy9209 116 LGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPND 177 (349)
Q Consensus 116 la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 177 (349)
+|..+...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..|+++++.+|++
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~ 64 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDN 64 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 44555555555555555555555555555555555555555555555555555555555544
No 163
>PRK11906 transcriptional regulator; Provisional
Probab=99.24 E-value=9.8e-10 Score=90.83 Aligned_cols=146 Identities=15% Similarity=0.146 Sum_probs=98.8
Q ss_pred HHHHHHHHHHHH---hcCCCChHHHHHHHHHHHHh---------hCHHHHHHHHHHHHccccccHHHHHHHHHHHHhcCc
Q psy9209 160 PYYGLYYYKQAH---MVRPNDPRMLTALGEAFEKQ---------EKISEAMKCYNKSRAIGDADGKALFKLAKLYDKLNE 227 (349)
Q Consensus 160 ~~~A~~~~~~~~---~~~~~~~~~~~~l~~~~~~~---------~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~ 227 (349)
.+.|+.+|.+++ .++|+...++..++.++... ....+|....+++++++|.++.++..+|.+....++
T Consensus 274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~ 353 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLSGQ 353 (458)
T ss_pred HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcc
Confidence 356677777777 67777777777777776643 234566777777777777777777777777777777
Q ss_pred HHHHHHHHHHHHhcccccCCCCCCcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHcccCChHHHHHHHHHH-HHHcCCCC
Q psy9209 228 TEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSI-AQKRQPDE 306 (349)
Q Consensus 228 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~-~~~~~~~~ 306 (349)
++.|...|++++.++|+ .+.+|+..|.+..-.|+.++|...++++++++|....+-...-.+ .....-.+
T Consensus 354 ~~~a~~~f~rA~~L~Pn---------~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~~~~ 424 (458)
T PRK11906 354 AKVSHILFEQAKIHSTD---------IASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPNPLK 424 (458)
T ss_pred hhhHHHHHHHHhhcCCc---------cHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCCchh
Confidence 77777777777777777 677777777777777777777777777777777655443333333 22244455
Q ss_pred CchhHHHH
Q psy9209 307 SSSQPMEC 314 (349)
Q Consensus 307 ~A~~~~~~ 314 (349)
+|+..|-+
T Consensus 425 ~~~~~~~~ 432 (458)
T PRK11906 425 NNIKLYYK 432 (458)
T ss_pred hhHHHHhh
Confidence 66665544
No 164
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=99.24 E-value=1.6e-08 Score=80.51 Aligned_cols=224 Identities=22% Similarity=0.209 Sum_probs=191.7
Q ss_pred cchHHHHHHHHHHHhhCcc--cHHHHHHHHHHHHhcCChHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHhCCHHHHHH
Q psy9209 90 ESSSQAVLYFQRALKLNPN--YLGVWTLLGHEYMEMKNTNAAIQCYRQAIE--INNLDYRAWYGLGQTYEILRLPYYGLY 165 (349)
Q Consensus 90 ~~~~~A~~~~~~~~~~~~~--~~~~~~~la~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~ 165 (349)
+....+...+...+...+. ........+..+...+.+..+...+...+. ..+.....+...+..+...+++..++.
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALE 116 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHH
Confidence 5667777788888777776 367888899999999999999999999987 678888899999999999999999999
Q ss_pred HHHHHHhcCCCChHHHHHHHH-HHHHhhCHHHHHHHHHHHHcccc---ccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc
Q psy9209 166 YYKQAHMVRPNDPRMLTALGE-AFEKQEKISEAMKCYNKSRAIGD---ADGKALFKLAKLYDKLNETEAAADLFMEFVSK 241 (349)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~A~~~~~~a~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 241 (349)
.+..++...+.........+. ++...|++++|...+.+++...| .........+..+...++++.|+..+.+++..
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 196 (291)
T COG0457 117 LLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKL 196 (291)
T ss_pred HHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhh
Confidence 999999988877666666666 89999999999999999988776 35666777777788899999999999999998
Q ss_pred ccccCCCCCCcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHcccCChHHHHHHHHHHHHHcCCCCCchhHHHHhhhcCCC
Q psy9209 242 LDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDESSSQPMECAVVLDPV 321 (349)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~ 321 (349)
.+.. ....+..++..+...++++.|...+..++...|........++..+...+..+++...+.+++...|.
T Consensus 197 ~~~~--------~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 197 NPDD--------DAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred Cccc--------chHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 7761 37888999999999999999999999999999987677777777777777789999999999988886
No 165
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=99.24 E-value=6.1e-10 Score=81.79 Aligned_cols=104 Identities=13% Similarity=-0.092 Sum_probs=98.3
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Q psy9209 110 LGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFE 189 (349)
Q Consensus 110 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 189 (349)
+..++..|..|-..|-+.-|.-.|.+++.+.|+.+.++..+|..+...|+++.|.+.|+..++++|....+..+.|..+.
T Consensus 65 A~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~Y 144 (297)
T COG4785 65 AQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALY 144 (297)
T ss_pred HHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeee
Confidence 45678889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhCHHHHHHHHHHHHccccccHH
Q psy9209 190 KQEKISEAMKCYNKSRAIGDADGK 213 (349)
Q Consensus 190 ~~~~~~~A~~~~~~a~~~~~~~~~ 213 (349)
--|++.-|.+-+.+-.+.+|++|.
T Consensus 145 Y~gR~~LAq~d~~~fYQ~D~~DPf 168 (297)
T COG4785 145 YGGRYKLAQDDLLAFYQDDPNDPF 168 (297)
T ss_pred ecCchHhhHHHHHHHHhcCCCChH
Confidence 999999999999999999988765
No 166
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=99.24 E-value=5.1e-10 Score=88.35 Aligned_cols=110 Identities=13% Similarity=0.060 Sum_probs=86.0
Q ss_pred hHHHHHHHHHH-HHhhCHHHHHHHHHHHHcccccc---HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCCCCCcc
Q psy9209 178 PRMLTALGEAF-EKQEKISEAMKCYNKSRAIGDAD---GKALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTC 253 (349)
Q Consensus 178 ~~~~~~l~~~~-~~~~~~~~A~~~~~~a~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 253 (349)
....+..+..+ ...|++++|+..|++.++..|++ +.+++.+|.+|...|++++|+..|++++...|+ ++.
T Consensus 142 e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~------s~~ 215 (263)
T PRK10803 142 ANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPK------SPK 215 (263)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC------Ccc
Confidence 35566666655 45688888888888888888876 468888888888888888888888888888776 555
Q ss_pred hHHHHHHHHHHHHHhCCHHHHHHHHHHHHcccCChHHHHH
Q psy9209 254 GFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKS 293 (349)
Q Consensus 254 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 293 (349)
.+++++.+|.++...|++++|...|+++++..|+...+..
T Consensus 216 ~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a~~ 255 (263)
T PRK10803 216 AADAMFKVGVIMQDKGDTAKAKAVYQQVIKKYPGTDGAKQ 255 (263)
T ss_pred hhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHH
Confidence 7888888888888888888888888888888887765443
No 167
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=99.22 E-value=5.8e-11 Score=73.02 Aligned_cols=62 Identities=18% Similarity=0.245 Sum_probs=32.7
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhCHHHHHHHHHHHHcccccc
Q psy9209 150 LGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDAD 211 (349)
Q Consensus 150 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~ 211 (349)
+|..+...|++++|+..|+++++.+|+++.++..+|.++..+|++++|+..|+++++.+|++
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~ 64 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDN 64 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 44555555555555555555555555555555555555555555555555555555555543
No 168
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=99.21 E-value=1.8e-08 Score=76.87 Aligned_cols=165 Identities=16% Similarity=0.070 Sum_probs=111.9
Q ss_pred cHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCccc---HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChH---HHH
Q psy9209 109 YLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLD---YRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPR---MLT 182 (349)
Q Consensus 109 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~---~~~ 182 (349)
.+..++.-|...++.|++++|+..|+.+....|.. ..+...++.++++.+++++|+...++-+.+.|.++. +++
T Consensus 33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Y 112 (254)
T COG4105 33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYY 112 (254)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHH
Confidence 35667778888888888888888888888776654 566777888888888888888888888888777663 455
Q ss_pred HHHHHHHHh--------hCHHHHHHHHHHHHccccccHH-----------------HHHHHHHHHHhcCcHHHHHHHHHH
Q psy9209 183 ALGEAFEKQ--------EKISEAMKCYNKSRAIGDADGK-----------------ALFKLAKLYDKLNETEAAADLFME 237 (349)
Q Consensus 183 ~l~~~~~~~--------~~~~~A~~~~~~a~~~~~~~~~-----------------~~~~l~~~~~~~~~~~~A~~~~~~ 237 (349)
..|.++... .-..+|+..|+..+...|++.. --..+|..|.+.|.+..|+..++.
T Consensus 113 lkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~ 192 (254)
T COG4105 113 LKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEE 192 (254)
T ss_pred HHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHH
Confidence 556555432 2345677777777777776421 113456666777777777777777
Q ss_pred HHhcccccCCCCCCcchHHHHHHHHHHHHHhCCHHHHHHHHH
Q psy9209 238 FVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQ 279 (349)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 279 (349)
+++..|+ .+...+++..+..+|..+|-.++|...-.
T Consensus 193 v~e~y~~------t~~~~eaL~~l~eaY~~lgl~~~a~~~~~ 228 (254)
T COG4105 193 VLENYPD------TSAVREALARLEEAYYALGLTDEAKKTAK 228 (254)
T ss_pred HHhcccc------ccchHHHHHHHHHHHHHhCChHHHHHHHH
Confidence 7766555 34456666666777777776666665533
No 169
>KOG0543|consensus
Probab=99.21 E-value=5.7e-10 Score=89.92 Aligned_cols=129 Identities=17% Similarity=0.067 Sum_probs=110.8
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhcCCC----C-----------hHHHHHHHHHHHHhhCHHHHHHHHHHHHcccccc
Q psy9209 147 WYGLGQTYEILRLPYYGLYYYKQAHMVRPN----D-----------PRMLTALGEAFEKQEKISEAMKCYNKSRAIGDAD 211 (349)
Q Consensus 147 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~----~-----------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~ 211 (349)
...-|..+++.|+|..|...|++++..-.. + ..++.+++.|+.++++|.+|+....+++.++|++
T Consensus 211 ~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N 290 (397)
T KOG0543|consen 211 KKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPNN 290 (397)
T ss_pred HHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCc
Confidence 446688999999999999999998876321 1 1468899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCCCCCcchHHHHHHHHHHHHHhCCHHHH-HHHHHHHHcc
Q psy9209 212 GKALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTA-YKCAQKCLQH 284 (349)
Q Consensus 212 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A-~~~~~~a~~~ 284 (349)
..++++.|.++..+|+++.|+..|+++++..|. +..+...|..+..+..++.+. .+.|.+++..
T Consensus 291 ~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~---------Nka~~~el~~l~~k~~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 291 VKALYRRGQALLALGEYDLARDDFQKALKLEPS---------NKAARAELIKLKQKIREYEEKEKKMYANMFAK 355 (397)
T ss_pred hhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCC---------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 999999999999999999999999999999999 788888888887776655444 6777777654
No 170
>KOG3081|consensus
Probab=99.19 E-value=4.6e-08 Score=74.47 Aligned_cols=254 Identities=14% Similarity=0.051 Sum_probs=132.7
Q ss_pred HHHHhcCCHHHHHHHHHHHhhhhhchHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhCcccHHHHHHHHHHHHhcCCh
Q psy9209 47 NHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDESSSQAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNT 126 (349)
Q Consensus 47 ~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~ 126 (349)
+-++-.|+|..++..-++.-... ..++.. ..+++.|...|.+...+......- .....+...++.....-++.
T Consensus 16 Rn~fY~Gnyq~~ine~~~~~~~~-~~~e~d---~y~~raylAlg~~~~~~~eI~~~~---~~~lqAvr~~a~~~~~e~~~ 88 (299)
T KOG3081|consen 16 RNYFYLGNYQQCINEAEKFSSSK-TDVELD---VYMYRAYLALGQYQIVISEIKEGK---ATPLQAVRLLAEYLELESNK 88 (299)
T ss_pred HHHHHhhHHHHHHHHHHhhcccc-chhHHH---HHHHHHHHHccccccccccccccc---CChHHHHHHHHHHhhCcchh
Confidence 34555677777766655544332 222221 112222333344433322221111 11123334444444444444
Q ss_pred HHHHHHHHHHHHhC--cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhCHHHHHHHHHHH
Q psy9209 127 NAAIQCYRQAIEIN--NLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKS 204 (349)
Q Consensus 127 ~~A~~~~~~a~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 204 (349)
++-+.-..+.+... ..+......-|.++...|++++|++..... .+.++...-..++.++.+.+-|...++++
T Consensus 89 ~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~-----~~lE~~Al~VqI~lk~~r~d~A~~~lk~m 163 (299)
T KOG3081|consen 89 KSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLG-----ENLEAAALNVQILLKMHRFDLAEKELKKM 163 (299)
T ss_pred HHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhcc-----chHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44433333333221 112233344455666777777777666552 23445555556666777777777777777
Q ss_pred HccccccHHHHHHHHHHHHh----cCcHHHHHHHHHHHHhcccccCCCCCCcchHHHHHHHHHHHHHhCCHHHHHHHHHH
Q psy9209 205 RAIGDADGKALFKLAKLYDK----LNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQK 280 (349)
Q Consensus 205 ~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 280 (349)
.+++.+ .++..||..+.. .+++.+|.-+|++.-...|. .+......+.++..+|++++|...++.
T Consensus 164 q~ided--~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~---------T~~llnG~Av~~l~~~~~eeAe~lL~e 232 (299)
T KOG3081|consen 164 QQIDED--ATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPP---------TPLLLNGQAVCHLQLGRYEEAESLLEE 232 (299)
T ss_pred HccchH--HHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCC---------ChHHHccHHHHHHHhcCHHHHHHHHHH
Confidence 666543 233334333332 24566677777766664444 466677777777777777777777777
Q ss_pred HHcccCChHHHHHHHHHHHHHcCCCCCchh-HHHHhhhcCCCCC
Q psy9209 281 CLQHEETAEEAKSLLRSIAQKRQPDESSSQ-PMECAVVLDPVPP 323 (349)
Q Consensus 281 a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~-~~~~a~~~~p~~~ 323 (349)
++..++++++.+.++-.+....|...++.+ ...+.....|+++
T Consensus 233 aL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h~ 276 (299)
T KOG3081|consen 233 ALDKDAKDPETLANLIVLALHLGKDAEVTERNLSQLKLSHPEHP 276 (299)
T ss_pred HHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCcch
Confidence 777777777777777776666776654433 3344444555543
No 171
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=99.18 E-value=1.4e-09 Score=74.54 Aligned_cols=96 Identities=20% Similarity=0.114 Sum_probs=73.5
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHhCcc---cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC---ChHHHHHH
Q psy9209 111 GVWTLLGHEYMEMKNTNAAIQCYRQAIEINNL---DYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPN---DPRMLTAL 184 (349)
Q Consensus 111 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~l 184 (349)
.+++.+|.++-..|+.++|+.+|++++..... ...++..+|.++..+|++++|+..+++++...|+ +..+...+
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~ 81 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFL 81 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHH
Confidence 46677888888888888888888888875332 3567778888888888888888888888887777 56667777
Q ss_pred HHHHHHhhCHHHHHHHHHHHHc
Q psy9209 185 GEAFEKQEKISEAMKCYNKSRA 206 (349)
Q Consensus 185 ~~~~~~~~~~~~A~~~~~~a~~ 206 (349)
+.++...|++++|+..+-.++.
T Consensus 82 Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 82 ALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 7888888888888887776654
No 172
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=99.18 E-value=1.3e-09 Score=90.58 Aligned_cols=120 Identities=17% Similarity=0.151 Sum_probs=99.9
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhCHH
Q psy9209 116 LGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKIS 195 (349)
Q Consensus 116 la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 195 (349)
+-.++...++++.|+..+++..+.+|+ +...++.++...++..+|+..+.+++...|.+...+...+..+...++++
T Consensus 175 Ll~~l~~t~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~ 251 (395)
T PF09295_consen 175 LLKYLSLTQRYDEAIELLEKLRERDPE---VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYE 251 (395)
T ss_pred HHHHHhhcccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHH
Confidence 344555678888888888888877764 55668888888888888999999998888888888888888888889999
Q ss_pred HHHHHHHHHHccccccHHHHHHHHHHHHhcCcHHHHHHHHHHH
Q psy9209 196 EAMKCYNKSRAIGDADGKALFKLAKLYDKLNETEAAADLFMEF 238 (349)
Q Consensus 196 ~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 238 (349)
.|+.+.+++++..|.+...|+.|+.+|...|+++.|+..++.+
T Consensus 252 lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 252 LALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred HHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 9999999999999988889999999999999999888777644
No 173
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=99.18 E-value=1.8e-09 Score=85.29 Aligned_cols=103 Identities=13% Similarity=0.077 Sum_probs=70.1
Q ss_pred HHHHHHHHHH-HhcCChHHHHHHHHHHHHhCccc---HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCC---hHHHHH
Q psy9209 111 GVWTLLGHEY-MEMKNTNAAIQCYRQAIEINNLD---YRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPND---PRMLTA 183 (349)
Q Consensus 111 ~~~~~la~~~-~~~~~~~~A~~~~~~a~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~ 183 (349)
...+..|..+ ...|+|++|+..|++.++..|+. +.+++.+|.+|+..|++++|+..|++++...|++ +++++.
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~k 222 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFK 222 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHH
Confidence 4455555554 45577777777777777777765 4677777777777777777777777777666653 466667
Q ss_pred HHHHHHHhhCHHHHHHHHHHHHccccccHH
Q psy9209 184 LGEAFEKQEKISEAMKCYNKSRAIGDADGK 213 (349)
Q Consensus 184 l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~ 213 (349)
+|.++...|++++|+..|+++++..|+...
T Consensus 223 lg~~~~~~g~~~~A~~~~~~vi~~yP~s~~ 252 (263)
T PRK10803 223 VGVIMQDKGDTAKAKAVYQQVIKKYPGTDG 252 (263)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCcCCHH
Confidence 777777777777777777777777766543
No 174
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=99.17 E-value=1.7e-09 Score=89.82 Aligned_cols=120 Identities=17% Similarity=0.149 Sum_probs=109.2
Q ss_pred HhcCCCcchHHHHHHHHHHHhhCcccHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHHHH
Q psy9209 84 QKRQPDESSSQAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYG 163 (349)
Q Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A 163 (349)
......++++.|+..+++..+.+|+ +...++.++...++-.+|+..+++++...|.+...+...+..+...++++.|
T Consensus 177 ~~l~~t~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lA 253 (395)
T PF09295_consen 177 KYLSLTQRYDEAIELLEKLRERDPE---VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYELA 253 (395)
T ss_pred HHHhhcccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHH
Confidence 3344468999999999999988875 6677899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCChHHHHHHHHHHHHhhCHHHHHHHHHHHHc
Q psy9209 164 LYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRA 206 (349)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 206 (349)
+.+.+++....|++...|..|+.+|...|+++.|+..++.+--
T Consensus 254 L~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm 296 (395)
T PF09295_consen 254 LEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCPM 296 (395)
T ss_pred HHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence 9999999999999999999999999999999999988876543
No 175
>KOG3617|consensus
Probab=99.14 E-value=3e-08 Score=86.80 Aligned_cols=259 Identities=15% Similarity=0.173 Sum_probs=138.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhhhhchHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhCcccHHHHHHHHHHHHhc
Q psy9209 44 YLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDESSSQAVLYFQRALKLNPNYLGVWTLLGHEYMEM 123 (349)
Q Consensus 44 ~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~ 123 (349)
..+....+.|..++|...|.+.-..+ ++..+ |...|.+++|.+..+.-=.+. ....|++.+..+...
T Consensus 805 kvAvLAieLgMlEeA~~lYr~ckR~D--------LlNKl---yQs~g~w~eA~eiAE~~DRiH--Lr~Tyy~yA~~Lear 871 (1416)
T KOG3617|consen 805 KVAVLAIELGMLEEALILYRQCKRYD--------LLNKL---YQSQGMWSEAFEIAETKDRIH--LRNTYYNYAKYLEAR 871 (1416)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHH--------HHHHH---HHhcccHHHHHHHHhhcccee--hhhhHHHHHHHHHhh
Confidence 34555566677777777777654322 12222 223355555555544321111 123455555555555
Q ss_pred CChHHHHHHHHHH----------HHhCcc----------cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc----------
Q psy9209 124 KNTNAAIQCYRQA----------IEINNL----------DYRAWYGLGQTYEILRLPYYGLYYYKQAHMV---------- 173 (349)
Q Consensus 124 ~~~~~A~~~~~~a----------~~~~~~----------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---------- 173 (349)
++.+.|+++|+++ +.-+|. ++..|...|..+...|+.+.|+.+|..+-..
T Consensus 872 ~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~q 951 (1416)
T KOG3617|consen 872 RDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKDYFSMVRIKCIQ 951 (1416)
T ss_pred ccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhhhhhheeeEeec
Confidence 5555555555543 111221 2334444455555555555555555555332
Q ss_pred -----------CCCChHHHHHHHHHHHHhhCHHHHHHHHHHHHccc------ccc--------------HHHHHHHHHHH
Q psy9209 174 -----------RPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIG------DAD--------------GKALFKLAKLY 222 (349)
Q Consensus 174 -----------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~------~~~--------------~~~~~~l~~~~ 222 (349)
...+..+.+.+|+.|...|+..+|+.+|.++-... ..+ +.-....+..|
T Consensus 952 Gk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYy 1031 (1416)
T KOG3617|consen 952 GKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYY 1031 (1416)
T ss_pred cCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHH
Confidence 22345667778888888888888888877764321 100 11111223333
Q ss_pred HhcC-cHHHHHHHHHHH------Hhccccc---------CCCCCCcchHHHHHHHHHHHHHhCCHHHHHHHHHHH-----
Q psy9209 223 DKLN-ETEAAADLFMEF------VSKLDTF---------AAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKC----- 281 (349)
Q Consensus 223 ~~~~-~~~~A~~~~~~~------~~~~~~~---------~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a----- 281 (349)
...| +.+.|...|.++ +++.-.. ....+...++..+..-+..+....+|++|..++-.+
T Consensus 1032 Ee~g~~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~~~~ 1111 (1416)
T KOG3617|consen 1032 EELGGYAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLAREFSG 1111 (1416)
T ss_pred HHcchhhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 3333 444444444332 1110000 001122336888888999999999999998766544
Q ss_pred -Hcc----------------cC---------ChHHHHHHHHHHHHHcCCCCCchhHHHHh
Q psy9209 282 -LQH----------------EE---------TAEEAKSLLRSIAQKRQPDESSSQPMECA 315 (349)
Q Consensus 282 -~~~----------------~~---------~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 315 (349)
+++ .| ....++..++.+..++|.+..|.+-|.+|
T Consensus 1112 AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQA 1171 (1416)
T KOG3617|consen 1112 ALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQA 1171 (1416)
T ss_pred HHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhhh
Confidence 322 11 12466778899999999999888877765
No 176
>KOG3081|consensus
Probab=99.14 E-value=4.2e-07 Score=69.36 Aligned_cols=255 Identities=13% Similarity=0.016 Sum_probs=173.1
Q ss_pred hhHHhhCcHHHHHHHHHHHHHhccccCCCCCcchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhchHHHHHHHHHHH
Q psy9209 4 KLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIA 83 (349)
Q Consensus 4 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~ 83 (349)
|-++-.|+|..++..-++.- ..+.. ......+.+.|...|++...+......- ...+.....++
T Consensus 16 Rn~fY~Gnyq~~ine~~~~~-------~~~~~---~e~d~y~~raylAlg~~~~~~~eI~~~~------~~~lqAvr~~a 79 (299)
T KOG3081|consen 16 RNYFYLGNYQQCINEAEKFS-------SSKTD---VELDVYMYRAYLALGQYQIVISEIKEGK------ATPLQAVRLLA 79 (299)
T ss_pred HHHHHhhHHHHHHHHHHhhc-------cccch---hHHHHHHHHHHHHccccccccccccccc------CChHHHHHHHH
Confidence 34556788888886554332 11111 1346678888888888765554433322 11111233333
Q ss_pred HhcCCCcchHHHHHHHHHHHhhC--cccHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHH
Q psy9209 84 QKRQPDESSSQAVLYFQRALKLN--PNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPY 161 (349)
Q Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~ 161 (349)
.....-++.++-+....+.+... ..+......-|.++...|++++|.....+.. +.++...-..++.+..+.+
T Consensus 80 ~~~~~e~~~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~-----~lE~~Al~VqI~lk~~r~d 154 (299)
T KOG3081|consen 80 EYLELESNKKSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE-----NLEAAALNVQILLKMHRFD 154 (299)
T ss_pred HHhhCcchhHHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc-----hHHHHHHHHHHHHHHHHHH
Confidence 33333445455554444443322 2233455666788999999999999887732 3455555567888899999
Q ss_pred HHHHHHHHHHhcCCCChHHHHHHHHHHHH----hhCHHHHHHHHHHHHccccccHHHHHHHHHHHHhcCcHHHHHHHHHH
Q psy9209 162 YGLYYYKQAHMVRPNDPRMLTALGEAFEK----QEKISEAMKCYNKSRAIGDADGKALFKLAKLYDKLNETEAAADLFME 237 (349)
Q Consensus 162 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 237 (349)
-|.+.++++.+++.+ ..+..+|..+.. .+++.+|.-+|+..-+..|..+.....++.++..+|++++|...++.
T Consensus 155 ~A~~~lk~mq~ided--~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~e 232 (299)
T KOG3081|consen 155 LAEKELKKMQQIDED--ATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEE 232 (299)
T ss_pred HHHHHHHHHHccchH--HHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHH
Confidence 999999999887543 455556666654 35688999999999887777899999999999999999999999999
Q ss_pred HHhcccccCCCCCCcchHHHHHHHHHHHHHhCCHHHHH-HHHHHHHcccCChHH
Q psy9209 238 FVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAY-KCAQKCLQHEETAEE 290 (349)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~-~~~~~a~~~~~~~~~ 290 (349)
++..+++ .++.+.++..+-...|...++. +++.+.....|+.+-
T Consensus 233 aL~kd~~---------dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h~~ 277 (299)
T KOG3081|consen 233 ALDKDAK---------DPETLANLIVLALHLGKDAEVTERNLSQLKLSHPEHPF 277 (299)
T ss_pred HHhccCC---------CHHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCcchH
Confidence 9999888 7999999998888888776654 455555566676553
No 177
>KOG4648|consensus
Probab=99.14 E-value=1.3e-10 Score=91.24 Aligned_cols=232 Identities=12% Similarity=0.014 Sum_probs=158.9
Q ss_pred HHHHHhcCCCcchHHHHHHHHHHHhhCcccHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCC
Q psy9209 80 RSIAQKRQPDESSSQAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRL 159 (349)
Q Consensus 80 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~ 159 (349)
-.-|..|+++|.|++|+.+|.+++..+|.++..+.+.+..|++.+.+..|...+..++.++.....+|...+..-..+|.
T Consensus 101 KE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~ 180 (536)
T KOG4648|consen 101 KERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGN 180 (536)
T ss_pred HHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhh
Confidence 44566788889999999999999999998888899999999999999999999999999988888889999998889999
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhCHHHHHHHHHHHHccccccHHHHH---------HHHHHHHhcCcHHH
Q psy9209 160 PYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKALF---------KLAKLYDKLNETEA 230 (349)
Q Consensus 160 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~---------~l~~~~~~~~~~~~ 230 (349)
..+|.+-++.++.+.|++.+..-.++.+-. ..++. -+.+..|....+.. .-|..+...|.++.
T Consensus 181 ~~EAKkD~E~vL~LEP~~~ELkK~~a~i~S----l~E~~----I~~KsT~G~~~A~Q~~~Q~l~~K~~G~~Fsk~~~~~~ 252 (536)
T KOG4648|consen 181 NMEAKKDCETVLALEPKNIELKKSLARINS----LRERK----IATKSTPGFTPARQGMIQILPIKKPGYKFSKKAMRSV 252 (536)
T ss_pred HHHHHHhHHHHHhhCcccHHHHHHHHHhcc----hHhhh----HHhhcCCCCCccccchhhhccccCcchhhhhhhcccc
Confidence 999999999999999987665544443322 22211 11112222111111 12445556666666
Q ss_pred HHHHHHHHHhcccccCCCCCCcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHcccCChHHHHHHHHHHHHHcCCCCCchh
Q psy9209 231 AADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDESSSQ 310 (349)
Q Consensus 231 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 310 (349)
++..+.+-+..... ....-.+ +..+.+.-+++.++.-..+++..+|........-+...--.|...++..
T Consensus 253 ~i~~~~~~~A~~~~---------~~~L~~~-~~~~~KI~~~~~~~~~~~~~~~~~~s~~~~~s~~~~A~T~~~~~~E~K~ 322 (536)
T KOG4648|consen 253 PVVDVVSPRATIDD---------SNQLRIS-DEDIDKIFNSNCGIIEEVKKTNPKPTPMPDTSGPPKAETIAKTSKEVKP 322 (536)
T ss_pred ceeEeeccccccCc---------cccCccc-HHHHHHHhhcchhHHHHHHhcCCCCCcCcccCCCchhHHHHhhhhhcCc
Confidence 66666554443322 1111122 5566666788888888888877776554444444444455666778888
Q ss_pred HHHHhhhcCCCCCCccccC
Q psy9209 311 PMECAVVLDPVPPSTRSSK 329 (349)
Q Consensus 311 ~~~~a~~~~p~~~~~~~~~ 329 (349)
.++.++.+.|.+......+
T Consensus 323 ~~~T~~~~~P~~~~~~~~~ 341 (536)
T KOG4648|consen 323 TKQTAVKVAPAVETPKETE 341 (536)
T ss_pred chhheeeeccccccchhhh
Confidence 8888998888877655433
No 178
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=99.12 E-value=4e-08 Score=70.62 Aligned_cols=149 Identities=16% Similarity=0.085 Sum_probs=92.6
Q ss_pred hcCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHh-cCCCChHHHHHHHHHHHHhhCHHHHHHH
Q psy9209 122 EMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHM-VRPNDPRMLTALGEAFEKQEKISEAMKC 200 (349)
Q Consensus 122 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 200 (349)
+.=+++....-..+.++..|. ..-.+.||......|++.+|...|++++. +..+++..+..+++..+..+++..|...
T Consensus 68 q~ldP~R~~Rea~~~~~~ApT-vqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~t 146 (251)
T COG4700 68 QKLDPERHLREATEELAIAPT-VQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQT 146 (251)
T ss_pred HhcChhHHHHHHHHHHhhchh-HHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHH
Confidence 333444444444444444443 23345666666667777777777766664 3455666666677777777777777777
Q ss_pred HHHHHccccc--cHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCCCCCcchHHHHHHHHHHHHHhCCHHHHHHHH
Q psy9209 201 YNKSRAIGDA--DGKALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCA 278 (349)
Q Consensus 201 ~~~a~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 278 (349)
+++..+.+|. .++....+|.++..+|++.+|...|+.++...|. +......+..+.++|+.++|...+
T Consensus 147 Le~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg----------~~ar~~Y~e~La~qgr~~ea~aq~ 216 (251)
T COG4700 147 LEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPG----------PQARIYYAEMLAKQGRLREANAQY 216 (251)
T ss_pred HHHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCC----------HHHHHHHHHHHHHhcchhHHHHHH
Confidence 7777666554 4556666677777777777777777777776665 566666666777777666665554
Q ss_pred HHH
Q psy9209 279 QKC 281 (349)
Q Consensus 279 ~~a 281 (349)
...
T Consensus 217 ~~v 219 (251)
T COG4700 217 VAV 219 (251)
T ss_pred HHH
Confidence 443
No 179
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=99.10 E-value=6.4e-08 Score=73.91 Aligned_cols=104 Identities=14% Similarity=0.149 Sum_probs=83.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhchHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhCcccHH---HHHHH
Q psy9209 40 FAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDESSSQAVLYFQRALKLNPNYLG---VWTLL 116 (349)
Q Consensus 40 ~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~---~~~~l 116 (349)
..|+.-|...++.|++++|+..|+.+....|..+.....+..++.++++.++++.|+...++-+.+.|.++. +++..
T Consensus 35 ~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Ylk 114 (254)
T COG4105 35 SELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLK 114 (254)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHH
Confidence 578899999999999999999999999998888887777888888889999999999999999999887654 56677
Q ss_pred HHHHHhc--------CChHHHHHHHHHHHHhCccc
Q psy9209 117 GHEYMEM--------KNTNAAIQCYRQAIEINNLD 143 (349)
Q Consensus 117 a~~~~~~--------~~~~~A~~~~~~a~~~~~~~ 143 (349)
|.++... .-...|+..|+..+...|+.
T Consensus 115 gLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS 149 (254)
T COG4105 115 GLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNS 149 (254)
T ss_pred HHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCC
Confidence 7775432 12346677777777777764
No 180
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=99.09 E-value=3.5e-08 Score=70.95 Aligned_cols=150 Identities=15% Similarity=0.142 Sum_probs=129.3
Q ss_pred cchHHHHHHHHHHHhhCcccHHHHHHHHHHHHhcCChHHHHHHHHHHHH-hCcccHHHHHHHHHHHHHhCCHHHHHHHHH
Q psy9209 90 ESSSQAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIE-INNLDYRAWYGLGQTYEILRLPYYGLYYYK 168 (349)
Q Consensus 90 ~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 168 (349)
=+++.......+.+...|. ..-.+.+|......|++.+|...|++++. +...++..+..+++.....+++..|...++
T Consensus 70 ldP~R~~Rea~~~~~~ApT-vqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe 148 (251)
T COG4700 70 LDPERHLREATEELAIAPT-VQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLE 148 (251)
T ss_pred cChhHHHHHHHHHHhhchh-HHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHH
Confidence 3677777777777777776 34568899999999999999999999987 456778899999999999999999999999
Q ss_pred HHHhcCCC--ChHHHHHHHHHHHHhhCHHHHHHHHHHHHccccccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc
Q psy9209 169 QAHMVRPN--DPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKLAKLYDKLNETEAAADLFMEFVSK 241 (349)
Q Consensus 169 ~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 241 (349)
+..+.+|. .+.....+|.++..+|++.+|...|+.++...| .+......+..+.++|+.++|..-+....+.
T Consensus 149 ~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~yp-g~~ar~~Y~e~La~qgr~~ea~aq~~~v~d~ 222 (251)
T COG4700 149 DLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYP-GPQARIYYAEMLAKQGRLREANAQYVAVVDT 222 (251)
T ss_pred HHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCC-CHHHHHHHHHHHHHhcchhHHHHHHHHHHHH
Confidence 99998875 467888999999999999999999999999988 5777788889999999988888777665543
No 181
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=99.06 E-value=7.3e-09 Score=70.97 Aligned_cols=97 Identities=15% Similarity=0.161 Sum_probs=51.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhhhhchHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhCcc---cHHHHHHHH
Q psy9209 41 AFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDESSSQAVLYFQRALKLNPN---YLGVWTLLG 117 (349)
Q Consensus 41 ~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~la 117 (349)
+++.+|.++-..|+.++|+.+|++++......+.....+..++..+...|++++|+..+++.+...|+ +..+...++
T Consensus 3 ~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~A 82 (120)
T PF12688_consen 3 ALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLA 82 (120)
T ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHH
Confidence 34555566666666666666666665544333333333444444454555555555555555555554 444445555
Q ss_pred HHHHhcCChHHHHHHHHHHH
Q psy9209 118 HEYMEMKNTNAAIQCYRQAI 137 (349)
Q Consensus 118 ~~~~~~~~~~~A~~~~~~a~ 137 (349)
.++...|++++|+..+-.++
T Consensus 83 l~L~~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 83 LALYNLGRPKEALEWLLEAL 102 (120)
T ss_pred HHHHHCCCHHHHHHHHHHHH
Confidence 55555555555555555444
No 182
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=99.06 E-value=5.9e-07 Score=72.32 Aligned_cols=256 Identities=10% Similarity=-0.000 Sum_probs=190.8
Q ss_pred hhhhHHhhCcHHHHHHHHHHHHHhccccCCCCCcchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhchHHHHHHHHH
Q psy9209 2 RNKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRS 81 (349)
Q Consensus 2 ~a~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~ 81 (349)
.|+.-.-.|+++.|.+-|+-++ .+|+-.. .-+..|-......|..+.|+.+-+.+-...|.-+-++....
T Consensus 126 eAQaal~eG~~~~Ar~kfeAMl-------~dPEtRl--lGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtL- 195 (531)
T COG3898 126 EAQAALLEGDYEDARKKFEAML-------DDPETRL--LGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATL- 195 (531)
T ss_pred HHHHHHhcCchHHHHHHHHHHh-------cChHHHH--HhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHH-
Confidence 3556667899999999998888 4443211 12333333445789999999999999999998776643322
Q ss_pred HHHhcCCCcchHHHHHHHHHHHhh---CcccH---HHHHHHHHHH-HhcCChHHHHHHHHHHHHhCcccHHHHHHHHHHH
Q psy9209 82 IAQKRQPDESSSQAVLYFQRALKL---NPNYL---GVWTLLGHEY-MEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTY 154 (349)
Q Consensus 82 ~~~~~~~~~~~~~A~~~~~~~~~~---~~~~~---~~~~~la~~~-~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~ 154 (349)
......|+++.|+++.+..... .++.. .+-..-+... .-..+...|...-.+++++.|+....-..-+..+
T Consensus 196 --e~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL~pdlvPaav~AAral 273 (531)
T COG3898 196 --EARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANKLAPDLVPAAVVAARAL 273 (531)
T ss_pred --HHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCccchHHHHHHHHH
Confidence 2234469999999999876543 23221 1112222222 2234578899999999999999988888899999
Q ss_pred HHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhCHHHHHHHHHHH---HccccccHHHHHHHHHHHHhcCcHHHH
Q psy9209 155 EILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKS---RAIGDADGKALFKLAKLYDKLNETEAA 231 (349)
Q Consensus 155 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a---~~~~~~~~~~~~~l~~~~~~~~~~~~A 231 (349)
.+.|+..++-.+++.+.+..|... ++..|....--+.++.-++++ ..+.|++.+.....+.....-|++..|
T Consensus 274 f~d~~~rKg~~ilE~aWK~ePHP~-----ia~lY~~ar~gdta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~A 348 (531)
T COG3898 274 FRDGNLRKGSKILETAWKAEPHPD-----IALLYVRARSGDTALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAA 348 (531)
T ss_pred HhccchhhhhhHHHHHHhcCCChH-----HHHHHHHhcCCCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHH
Confidence 999999999999999999888632 344454444444555555544 455899999999999999999999999
Q ss_pred HHHHHHHHhcccccCCCCCCcchHHHHHHHHHHHHHh-CCHHHHHHHHHHHHcc
Q psy9209 232 ADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKA-NNLDTAYKCAQKCLQH 284 (349)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~a~~~ 284 (349)
..--+.+....|. ..++..++.+-... |+-.++..++-++++.
T Consensus 349 Ra~Aeaa~r~~pr----------es~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 349 RAKAEAAAREAPR----------ESAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred HHHHHHHhhhCch----------hhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 9999999999986 77888899988776 9999999999999875
No 183
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=99.05 E-value=1.1e-09 Score=68.11 Aligned_cols=64 Identities=16% Similarity=0.072 Sum_probs=32.0
Q ss_pred HhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhCHHHHHHHHHHHHccccccHHHHHHHH
Q psy9209 156 ILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKLA 219 (349)
Q Consensus 156 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~ 219 (349)
..|++++|+..|++++..+|++..++..+|.++...|++++|...+++++..+|+++.++..++
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a 66 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLA 66 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHh
Confidence 3445555555555555555555555555555555555555555555555555554444444433
No 184
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=99.04 E-value=9.8e-10 Score=68.27 Aligned_cols=62 Identities=16% Similarity=0.171 Sum_probs=32.6
Q ss_pred cchHHHHHHHHHHHhhCcccHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCcccHHHHHHHH
Q psy9209 90 ESSSQAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLG 151 (349)
Q Consensus 90 ~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~ 151 (349)
|++++|+..|++++..+|++..++..+|.++...|++++|...+++++..+|+++.++..++
T Consensus 5 ~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a 66 (68)
T PF14559_consen 5 GDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLA 66 (68)
T ss_dssp THHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHh
Confidence 55555555555555555555555555555555555555555555555555555444444433
No 185
>KOG4648|consensus
Probab=99.03 E-value=1.8e-10 Score=90.40 Aligned_cols=235 Identities=13% Similarity=0.006 Sum_probs=167.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhhhhchHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhCcccHHHHHHHHHHHH
Q psy9209 42 FKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDESSSQAVLYFQRALKLNPNYLGVWTLLGHEYM 121 (349)
Q Consensus 42 ~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 121 (349)
+...|+.|+++|.|++|+.+|.+++..+|.++.. ..+.+.+|.+...+..|..-+..++.++.....+|...|..-.
T Consensus 100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~---~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~ 176 (536)
T KOG4648|consen 100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVY---HINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARE 176 (536)
T ss_pred HHHhhhhhhhccchhHHHHHhhhhhccCCCCccc---hhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHH
Confidence 4678999999999999999999999999988766 3455566778899999999999999999999999999999999
Q ss_pred hcCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHH---------HHHHHHHHHhh
Q psy9209 122 EMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRML---------TALGEAFEKQE 192 (349)
Q Consensus 122 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~---------~~l~~~~~~~~ 192 (349)
.+|...+|.+.++.++++.|++.+..-.++.+- ...++. -+.+..|....+. -.-|..+...|
T Consensus 177 ~Lg~~~EAKkD~E~vL~LEP~~~ELkK~~a~i~----Sl~E~~----I~~KsT~G~~~A~Q~~~Q~l~~K~~G~~Fsk~~ 248 (536)
T KOG4648|consen 177 SLGNNMEAKKDCETVLALEPKNIELKKSLARIN----SLRERK----IATKSTPGFTPARQGMIQILPIKKPGYKFSKKA 248 (536)
T ss_pred HHhhHHHHHHhHHHHHhhCcccHHHHHHHHHhc----chHhhh----HHhhcCCCCCccccchhhhccccCcchhhhhhh
Confidence 999999999999999999999766554444332 222221 1122222322222 22356667788
Q ss_pred CHHHHHHHHHHHHccccccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCCCCCcchHHHHHHHHHHHHHhCCHH
Q psy9209 193 KISEAMKCYNKSRAIGDADGKALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLD 272 (349)
Q Consensus 193 ~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 272 (349)
.++.++.++.+-+.....+.....+ +..+.+..+++.++....+++...|.. ......-+..-.-.|...
T Consensus 249 ~~~~~i~~~~~~~A~~~~~~~L~~~-~~~~~KI~~~~~~~~~~~~~~~~~~s~---------~~~~s~~~~A~T~~~~~~ 318 (536)
T KOG4648|consen 249 MRSVPVVDVVSPRATIDDSNQLRIS-DEDIDKIFNSNCGIIEEVKKTNPKPTP---------MPDTSGPPKAETIAKTSK 318 (536)
T ss_pred ccccceeEeeccccccCccccCccc-HHHHHHHhhcchhHHHHHHhcCCCCCc---------CcccCCCchhHHHHhhhh
Confidence 8888888887776665544444344 666777788888888888877776652 222222233333345667
Q ss_pred HHHHHHHHHHcccCChHHHHHHHHH
Q psy9209 273 TAYKCAQKCLQHEETAEEAKSLLRS 297 (349)
Q Consensus 273 ~A~~~~~~a~~~~~~~~~~~~~l~~ 297 (349)
++...++.++.+.|.+......+..
T Consensus 319 E~K~~~~T~~~~~P~~~~~~~~~sr 343 (536)
T KOG4648|consen 319 EVKPTKQTAVKVAPAVETPKETETR 343 (536)
T ss_pred hcCcchhheeeeccccccchhhhhh
Confidence 8888888888888876555444443
No 186
>KOG3617|consensus
Probab=99.01 E-value=3.3e-07 Score=80.52 Aligned_cols=71 Identities=17% Similarity=0.156 Sum_probs=50.2
Q ss_pred cHHHHHHHHHHHHhcCcHHHHHHHHH------HHHhcccccC----------------CCCCCcchHHHHHHHHHHHHHh
Q psy9209 211 DGKALFKLAKLYDKLNETEAAADLFM------EFVSKLDTFA----------------APPDKTCGFFAFKYLANHHLKA 268 (349)
Q Consensus 211 ~~~~~~~l~~~~~~~~~~~~A~~~~~------~~~~~~~~~~----------------~~~~~~~~~~~~~~l~~~~~~~ 268 (349)
+|..+..-+..+....+|++|...+- .++.+..+.+ ..........++..+|.++.++
T Consensus 1079 Dp~ll~RcadFF~~~~qyekAV~lL~~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQ 1158 (1416)
T KOG3617|consen 1079 DPKLLRRCADFFENNQQYEKAVNLLCLAREFSGALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQ 1158 (1416)
T ss_pred CHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhc
Confidence 57778888888888899999887654 4444432211 0112223567888999999999
Q ss_pred CCHHHHHHHHHHH
Q psy9209 269 NNLDTAYKCAQKC 281 (349)
Q Consensus 269 g~~~~A~~~~~~a 281 (349)
|.|..|-+-|.++
T Consensus 1159 G~Yh~AtKKfTQA 1171 (1416)
T KOG3617|consen 1159 GAYHAATKKFTQA 1171 (1416)
T ss_pred cchHHHHHHHhhh
Confidence 9999998888776
No 187
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.99 E-value=3.9e-09 Score=66.57 Aligned_cols=63 Identities=19% Similarity=0.280 Sum_probs=31.0
Q ss_pred HHHHhcCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHH
Q psy9209 118 HEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRM 180 (349)
Q Consensus 118 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 180 (349)
.+|...+++++|++++++++..+|.++..+...|.++...|++++|+..++++++..|+++.+
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~ 65 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDA 65 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHH
Confidence 344444555555555555555555544455555555555555555555555555444444433
No 188
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.98 E-value=4.7e-09 Score=66.21 Aligned_cols=68 Identities=16% Similarity=0.121 Sum_probs=41.4
Q ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhCHHHHHHHHHHHHccccccHHHHHHH
Q psy9209 151 GQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKL 218 (349)
Q Consensus 151 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l 218 (349)
..+|...+++++|+.++++++..+|+++..+...|.++...|++.+|+..++++++..|+++.+....
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~ 69 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALR 69 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHH
Confidence 34555666666666666666666666666666666666666666666666666666666555544433
No 189
>KOG2471|consensus
Probab=98.97 E-value=2.7e-06 Score=70.65 Aligned_cols=275 Identities=13% Similarity=0.102 Sum_probs=181.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHh-hhhhc---hHHH--HHHHHHHHHhcCCCcchHHHHHHHHHHHh-h-------
Q psy9209 40 FAFKYLANHHLKANNLDTAYKCAQKCL-QHEET---AEEA--KSLLRSIAQKRQPDESSSQAVLYFQRALK-L------- 105 (349)
Q Consensus 40 ~~~~~l~~~~~~~~~~~~A~~~~~~~l-~~~~~---~~~~--~~~l~~~~~~~~~~~~~~~A~~~~~~~~~-~------- 105 (349)
.++...+..++..|++.+|.+.+...- ...|. .+.. .....+++.++++.|.+.-+..+|.++++ .
T Consensus 241 ~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g 320 (696)
T KOG2471|consen 241 MALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNG 320 (696)
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhcc
Confidence 356778888888888888887765432 22222 1111 11124556667777888888888888885 1
Q ss_pred -Cc---------ccHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCC----------------
Q psy9209 106 -NP---------NYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRL---------------- 159 (349)
Q Consensus 106 -~~---------~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~---------------- 159 (349)
.| ...+..++.|..|...|++-.|.++|.++......+|..|..++.+.....+
T Consensus 321 ~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCima~~~~l~ee~~~s~s~~~i 400 (696)
T KOG2471|consen 321 LKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCIMALQKGLLEEGNSSLSRSEI 400 (696)
T ss_pred CCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhhhhhhccCCcccccc
Confidence 11 1345678888888889999899999988888888888888888887652100
Q ss_pred ---------------------------------HHHHHHHHHHHHhc---------------------------------
Q psy9209 160 ---------------------------------PYYGLYYYKQAHMV--------------------------------- 173 (349)
Q Consensus 160 ---------------------------------~~~A~~~~~~~~~~--------------------------------- 173 (349)
.+-|.-++..++-+
T Consensus 401 ~~~vig~g~rr~~m~~~nt~~~~~qS~~~p~~slefA~vCLrnal~Ll~e~q~~~~~~~~a~ns~~~g~~~e~~e~~~t~ 480 (696)
T KOG2471|consen 401 RVHVIGKGNRRQLMIEENTYVELAQSNQLPKLSLEFARVCLRNALYLLNEKQDLGSILSVAMNSTKEGSSSEHEEGNTTT 480 (696)
T ss_pred eeeeecccchhheeecccceeccccccCCCccccHHHHHHHHhhhhcCchhhcchhhhhhhccccccCCCCcCCCCCCCc
Confidence 12244445444433
Q ss_pred ------------CC-CCh-----------HHHHHHHHHHHHhhCHHHHHHHHHHHHccccccHHHHHHHHHHH-----Hh
Q psy9209 174 ------------RP-NDP-----------RMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKLAKLY-----DK 224 (349)
Q Consensus 174 ------------~~-~~~-----------~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~-----~~ 224 (349)
.| ..+ .++.+.+.+-..+|+.-.|+..-++.++. |+...++..+|.+| ..
T Consensus 481 ~Sk~h~gd~~~~~p~ssp~~~e~leNm~~ai~A~~ayV~L~Lgd~i~AL~~a~kLLq~-~~lS~~~kfLGHiYAaEAL~l 559 (696)
T KOG2471|consen 481 DSKEHKGDMSQEIPQSSPSAFEDLENMRQAIFANMAYVELELGDPIKALSAATKLLQL-ADLSKIYKFLGHIYAAEALCL 559 (696)
T ss_pred chhcCCCCCCccCCCCCcchHHHHHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHhh-hhhhhHHHHHHHHHHHHHHHH
Confidence 11 111 23456677778899999999999888876 34556666666554 45
Q ss_pred cCcHHHHHHHHHHHHhcc-----------------------cccC------CCCCCcchHHHHHHHHHHHHHhCCHHHHH
Q psy9209 225 LNETEAAADLFMEFVSKL-----------------------DTFA------APPDKTCGFFAFKYLANHHLKANNLDTAY 275 (349)
Q Consensus 225 ~~~~~~A~~~~~~~~~~~-----------------------~~~~------~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 275 (349)
+.+..+|...+.--+--. |..+ ......-....+++||..+.-+|++++|.
T Consensus 560 ldr~seA~~HL~p~~~~~~~f~~~~n~~Df~~~~~~~e~l~~s~~r~~q~~~~sv~~Ar~v~~~nLa~a~alq~~~dqAk 639 (696)
T KOG2471|consen 560 LDRPSEAGAHLSPYLLGQDDFKLPYNQEDFDQWWKHTETLDPSTGRTRQSVFLSVEEARGVLFANLAAALALQGHHDQAK 639 (696)
T ss_pred cCChhhhhhccChhhcCCcccccccchhhhhhhhccccccCCcCCCCcccccCCHHHHhHHHHHHHHHHHHHhcccHHHH
Confidence 677777776665421111 1100 00111123457889999999999999999
Q ss_pred HHHHHHHcccC--ChHHHHHHHHHHHHHcCCCCCchhHHHHh
Q psy9209 276 KCAQKCLQHEE--TAEEAKSLLRSIAQKRQPDESSSQPMECA 315 (349)
Q Consensus 276 ~~~~~a~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 315 (349)
.++..+..+-+ ..+.+...--.+-.++|+...|...+++.
T Consensus 640 ~ll~~aatl~hs~v~~~A~~lavyidL~~G~~q~al~~lk~~ 681 (696)
T KOG2471|consen 640 SLLTHAATLLHSLVNVQATVLAVYIDLMLGRSQDALARLKQC 681 (696)
T ss_pred HHHHHHHHhhhccccHHHHHHHHHHHHhcCCCcchHHHHHhc
Confidence 99999988766 45566666666777899999999988874
No 190
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.96 E-value=3.3e-08 Score=76.22 Aligned_cols=106 Identities=18% Similarity=0.095 Sum_probs=68.4
Q ss_pred HHHHHHHHHHhhCHHHHHHHHHHHHcccccc---HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCCCCCcchHHH
Q psy9209 181 LTALGEAFEKQEKISEAMKCYNKSRAIGDAD---GKALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFA 257 (349)
Q Consensus 181 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (349)
.+..|.-+...|+|.+|...|..-++..|+. +.+++.||.+++.+|++++|...|..+++..|+ ++..+++
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~------s~KApda 217 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPK------SPKAPDA 217 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCC------CCCChHH
Confidence 4556666666666666666666666665553 456666666666666666666666666666665 4445666
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHcccCChHHHH
Q psy9209 258 FKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAK 292 (349)
Q Consensus 258 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 292 (349)
++.||.+...+|+.++|...|+++++..|+.+.+.
T Consensus 218 llKlg~~~~~l~~~d~A~atl~qv~k~YP~t~aA~ 252 (262)
T COG1729 218 LLKLGVSLGRLGNTDEACATLQQVIKRYPGTDAAK 252 (262)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHCCCCHHHH
Confidence 66666666666666666666666666666655443
No 191
>KOG2053|consensus
Probab=98.95 E-value=1.3e-06 Score=77.41 Aligned_cols=226 Identities=10% Similarity=0.001 Sum_probs=155.8
Q ss_pred CcchHHHHHHHHHHHhhCcccHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHHHHHHHHH
Q psy9209 89 DESSSQAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYK 168 (349)
Q Consensus 89 ~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 168 (349)
.+++.+|+....+.++..|+..-+....|.++.++|+.++|..+++..-...+++...+..+-.+|..++++++|..+|+
T Consensus 22 ~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye 101 (932)
T KOG2053|consen 22 SSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLYE 101 (932)
T ss_pred hHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 37889999999999999999888888899999999999999987777766777778888888899999999999999999
Q ss_pred HHHhcCCCChHHHHHHHHHHHHhhCHHHHHHHHHHHHccccccHHHHHHH-HHHHHhcCcH---------HHHHHHHHHH
Q psy9209 169 QAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKL-AKLYDKLNET---------EAAADLFMEF 238 (349)
Q Consensus 169 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l-~~~~~~~~~~---------~~A~~~~~~~ 238 (349)
++...+|+ ...+..+-.+|.+.+.|.+-.+.--+..+..|.++..+... ..+....... .-|....++.
T Consensus 102 ~~~~~~P~-eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~ 180 (932)
T KOG2053|consen 102 RANQKYPS-EELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKL 180 (932)
T ss_pred HHHhhCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHH
Confidence 99999998 77777777888888877765555445555667666544433 3333333222 2344555555
Q ss_pred HhcccccCCCCCCcchHHHHHHHHHHHHHhCCHHHHHHHHHHH-Hcc-cCChHHHHHHHHHHHHHcCCCCCchhHHHHhh
Q psy9209 239 VSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKC-LQH-EETAEEAKSLLRSIAQKRQPDESSSQPMECAV 316 (349)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a-~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 316 (349)
++.... -....++.. .-.++..+|++++|...+..- .+. .+.+......-...+...+++.+-.+...+++
T Consensus 181 l~~~gk------~~s~aE~~L-yl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll 253 (932)
T KOG2053|consen 181 LEKKGK------IESEAEIIL-YLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLL 253 (932)
T ss_pred hccCCc------cchHHHHHH-HHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 554311 111233322 235667788999999998433 233 33333333444566666777777777777777
Q ss_pred hcCCCC
Q psy9209 317 VLDPVP 322 (349)
Q Consensus 317 ~~~p~~ 322 (349)
...+++
T Consensus 254 ~k~~Dd 259 (932)
T KOG2053|consen 254 EKGNDD 259 (932)
T ss_pred HhCCcc
Confidence 777776
No 192
>KOG4234|consensus
Probab=98.94 E-value=3.5e-08 Score=71.76 Aligned_cols=109 Identities=22% Similarity=0.175 Sum_probs=88.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHhCccc-----HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHH
Q psy9209 113 WTLLGHEYMEMKNTNAAIQCYRQAIEINNLD-----YRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEA 187 (349)
Q Consensus 113 ~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~-----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 187 (349)
+-.-|.-++..|+|++|..-|..|+++.|.. ...+.+.|.++.+++.++.|+.-..++++++|....++...+.+
T Consensus 98 lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAea 177 (271)
T KOG4234|consen 98 LKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEA 177 (271)
T ss_pred HHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHH
Confidence 3445777888889999999999999887764 34567788888888999999999999999999888888888899
Q ss_pred HHHhhCHHHHHHHHHHHHccccccHHHHHHHHHH
Q psy9209 188 FEKQEKISEAMKCYNKSRAIGDADGKALFKLAKL 221 (349)
Q Consensus 188 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~ 221 (349)
|.+..++++|+.-|++.++.+|....+.-.++.+
T Consensus 178 yek~ek~eealeDyKki~E~dPs~~ear~~i~rl 211 (271)
T KOG4234|consen 178 YEKMEKYEEALEDYKKILESDPSRREAREAIARL 211 (271)
T ss_pred HHhhhhHHHHHHHHHHHHHhCcchHHHHHHHHhc
Confidence 9888899999999999998888766655554443
No 193
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.93 E-value=8.8e-08 Score=66.72 Aligned_cols=84 Identities=14% Similarity=0.052 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHhCccc---HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCh---HHHHH
Q psy9209 110 LGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLD---YRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDP---RMLTA 183 (349)
Q Consensus 110 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~ 183 (349)
+..++.-|...++.|+|++|++.|+.+....|.. ..+...++.+|+..+++++|+..+++.++++|.++ .+++.
T Consensus 10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~ 89 (142)
T PF13512_consen 10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYM 89 (142)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHH
Confidence 4566777777777788888888877777765543 56677777778888888888888888887777765 45666
Q ss_pred HHHHHHHhhC
Q psy9209 184 LGEAFEKQEK 193 (349)
Q Consensus 184 l~~~~~~~~~ 193 (349)
.|.++..+..
T Consensus 90 ~gL~~~~~~~ 99 (142)
T PF13512_consen 90 RGLSYYEQDE 99 (142)
T ss_pred HHHHHHHHhh
Confidence 6666665544
No 194
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.92 E-value=1.7e-08 Score=77.80 Aligned_cols=107 Identities=16% Similarity=0.078 Sum_probs=78.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhhhhchHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhCcc---cHHHHHHHHH
Q psy9209 42 FKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDESSSQAVLYFQRALKLNPN---YLGVWTLLGH 118 (349)
Q Consensus 42 ~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~la~ 118 (349)
.+..+.-++..|+|..|...|..-++..|+....-.....++.+++.+|+++.|...|..+.+..|+ -+++++.+|.
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~ 223 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV 223 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence 5667777777777888888888877777776655555556666677777888888888777776654 3567788888
Q ss_pred HHHhcCChHHHHHHHHHHHHhCcccHHHHH
Q psy9209 119 EYMEMKNTNAAIQCYRQAIEINNLDYRAWY 148 (349)
Q Consensus 119 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~ 148 (349)
+...+|+.++|...|+++++..|....+..
T Consensus 224 ~~~~l~~~d~A~atl~qv~k~YP~t~aA~~ 253 (262)
T COG1729 224 SLGRLGNTDEACATLQQVIKRYPGTDAAKL 253 (262)
T ss_pred HHHHhcCHHHHHHHHHHHHHHCCCCHHHHH
Confidence 888888888888888888877777655443
No 195
>KOG4234|consensus
Probab=98.91 E-value=5e-08 Score=70.98 Aligned_cols=98 Identities=17% Similarity=0.106 Sum_probs=90.8
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCh-----HHHHHHHHHHHHhhCHHHHHHHHHHHHccccccHHHHHHHHHH
Q psy9209 147 WYGLGQTYEILRLPYYGLYYYKQAHMVRPNDP-----RMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKLAKL 221 (349)
Q Consensus 147 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~ 221 (349)
+-.-|.-++..|+|++|..-|..++.+.|..+ ..+.+.|.++.++++++.|+.-..++++++|.+..++...+.+
T Consensus 98 lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAea 177 (271)
T KOG4234|consen 98 LKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEA 177 (271)
T ss_pred HHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHH
Confidence 44557788999999999999999999998765 4677889999999999999999999999999999999999999
Q ss_pred HHhcCcHHHHHHHHHHHHhcccc
Q psy9209 222 YDKLNETEAAADLFMEFVSKLDT 244 (349)
Q Consensus 222 ~~~~~~~~~A~~~~~~~~~~~~~ 244 (349)
|.++.++++|+..|++.++.+|.
T Consensus 178 yek~ek~eealeDyKki~E~dPs 200 (271)
T KOG4234|consen 178 YEKMEKYEEALEDYKKILESDPS 200 (271)
T ss_pred HHhhhhHHHHHHHHHHHHHhCcc
Confidence 99999999999999999999998
No 196
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.90 E-value=1.2e-07 Score=66.14 Aligned_cols=107 Identities=16% Similarity=0.125 Sum_probs=74.7
Q ss_pred hHHHHHHHHHHHHhhCHHHHHHHHHHHHccccc---cHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCCCCCcch
Q psy9209 178 PRMLTALGEAFEKQEKISEAMKCYNKSRAIGDA---DGKALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCG 254 (349)
Q Consensus 178 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 254 (349)
+..++.-|...++.|+|++|++.|+.+....|. ...+...++.+|...|++++|+..+++.+++.|. ++..
T Consensus 10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~------hp~v 83 (142)
T PF13512_consen 10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPT------HPNV 83 (142)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC------CCCc
Confidence 355667777777777777777777777776554 3456677777777777777777777777777776 5556
Q ss_pred HHHHHHHHHHHHHhCC---------------HHHHHHHHHHHHcccCChHH
Q psy9209 255 FFAFKYLANHHLKANN---------------LDTAYKCAQKCLQHEETAEE 290 (349)
Q Consensus 255 ~~~~~~l~~~~~~~g~---------------~~~A~~~~~~a~~~~~~~~~ 290 (349)
..+++..|.+++.+.. ...|...|++.+...|++..
T Consensus 84 dYa~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~y 134 (142)
T PF13512_consen 84 DYAYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEY 134 (142)
T ss_pred cHHHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChh
Confidence 7777777777777654 55666666666666666543
No 197
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.89 E-value=6.1e-09 Score=66.63 Aligned_cols=74 Identities=18% Similarity=0.225 Sum_probs=61.3
Q ss_pred cccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCCCCCcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHcc
Q psy9209 209 DADGKALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQH 284 (349)
Q Consensus 209 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 284 (349)
|+...++.++|.++..+|++++|+.+|++++.+.... ....+....++.++|.++..+|++++|+.++++++++
T Consensus 2 ~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~--~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 2 PDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQL--GDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT--TTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 5567789999999999999999999999999874331 1123446889999999999999999999999999876
No 198
>KOG2796|consensus
Probab=98.88 E-value=2e-06 Score=65.66 Aligned_cols=185 Identities=13% Similarity=0.079 Sum_probs=140.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhhhhchHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhCcccHHHHHHHHHHHHhc
Q psy9209 44 YLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDESSSQAVLYFQRALKLNPNYLGVWTLLGHEYMEM 123 (349)
Q Consensus 44 ~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~ 123 (349)
.-+.+....|+..+.+.-+......-.+. + .........+..+..+++-+ ..+.+.+..++.-.
T Consensus 127 lhAe~~~~lgnpqesLdRl~~L~~~V~~i------i----~~~e~~~~~ESsv~lW~KRl------~~Vmy~~~~~llG~ 190 (366)
T KOG2796|consen 127 LHAELQQYLGNPQESLDRLHKLKTVVSKI------L----ANLEQGLAEESSIRLWRKRL------GRVMYSMANCLLGM 190 (366)
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHHHHH------H----HHHHhccchhhHHHHHHHHH------HHHHHHHHHHHhcc
Confidence 34555566677666665555443321110 1 11111123355566665544 35678888999999
Q ss_pred CChHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC------CCChHHHHHHHHHHHHhhCHHH
Q psy9209 124 KNTNAAIQCYRQAIEIN-NLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVR------PNDPRMLTALGEAFEKQEKISE 196 (349)
Q Consensus 124 ~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~------~~~~~~~~~l~~~~~~~~~~~~ 196 (349)
|+|.-.+..+.+.++.+ |..+.....+|.+-.+.|+.+.|..++++.-+.. .....+..+.+.++...+++..
T Consensus 191 kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~ 270 (366)
T KOG2796|consen 191 KEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAE 270 (366)
T ss_pred hhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHH
Confidence 99999999999999987 5678888899999999999999999999655432 2234567788889999999999
Q ss_pred HHHHHHHHHccccccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccc
Q psy9209 197 AMKCYNKSRAIGDADGKALFKLAKLYDKLNETEAAADLFMEFVSKLDT 244 (349)
Q Consensus 197 A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 244 (349)
|...+.+++..+|.++.+..+.|.|....|+..+|++.++.++...|.
T Consensus 271 a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~ 318 (366)
T KOG2796|consen 271 AHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPR 318 (366)
T ss_pred HHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCc
Confidence 999999999999999999999999999999999999999999999887
No 199
>KOG2796|consensus
Probab=98.87 E-value=4.9e-07 Score=68.89 Aligned_cols=193 Identities=11% Similarity=0.079 Sum_probs=100.6
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhC
Q psy9209 114 TLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEK 193 (349)
Q Consensus 114 ~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 193 (349)
...|.+....|+..+.+.-+......-. .+..........+..+..+++-+ ..+.+.+..++...|.
T Consensus 126 ~lhAe~~~~lgnpqesLdRl~~L~~~V~-------~ii~~~e~~~~~ESsv~lW~KRl------~~Vmy~~~~~llG~kE 192 (366)
T KOG2796|consen 126 ILHAELQQYLGNPQESLDRLHKLKTVVS-------KILANLEQGLAEESSIRLWRKRL------GRVMYSMANCLLGMKE 192 (366)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHH-------HHHHHHHhccchhhHHHHHHHHH------HHHHHHHHHHHhcchh
Confidence 3445666667777776665554433210 01111111112233333333322 1344555555556666
Q ss_pred HHHHHHHHHHHHccc-cccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCCCCCcchHHHHHHHHHHHHHhCCHH
Q psy9209 194 ISEAMKCYNKSRAIG-DADGKALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLD 272 (349)
Q Consensus 194 ~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 272 (349)
|.-....+.++++.+ |..+.....+|.+.++.|+.+.|..+++.+-+.... .........+..+.+.++.-.+++.
T Consensus 193 y~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~k---L~~~q~~~~V~~n~a~i~lg~nn~a 269 (366)
T KOG2796|consen 193 YVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQK---LDGLQGKIMVLMNSAFLHLGQNNFA 269 (366)
T ss_pred hhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhh---hhccchhHHHHhhhhhheecccchH
Confidence 666666666666654 344555556666666666666666666544432222 1112223445555555566666666
Q ss_pred HHHHHHHHHHcccCChHHHHHHHHHHHHHcCCCCCchhHHHHhhhcCCCC
Q psy9209 273 TAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDESSSQPMECAVVLDPVP 322 (349)
Q Consensus 273 ~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~ 322 (349)
.|...+.+.+..+|.++.+-...+.|....|+..+|++.++.+++..|..
T Consensus 270 ~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~ 319 (366)
T KOG2796|consen 270 EAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRH 319 (366)
T ss_pred HHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCcc
Confidence 66666666666666666666666666666666666666666666665553
No 200
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.86 E-value=1.3e-08 Score=65.14 Aligned_cols=66 Identities=23% Similarity=0.318 Sum_probs=39.4
Q ss_pred ccHHHHHHHHHHHHhcCChHHHHHHHHHHHHhC-------cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Q psy9209 108 NYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEIN-------NLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMV 173 (349)
Q Consensus 108 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 173 (349)
+...++.++|.+|..+|++++|+.+|++++++. |....++.++|.++...|++++|++++++++++
T Consensus 3 ~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 3 DTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 344566667777777777777777777766541 112445566666666666666666666666543
No 201
>KOG2053|consensus
Probab=98.84 E-value=1.8e-05 Score=70.58 Aligned_cols=224 Identities=13% Similarity=0.017 Sum_probs=155.2
Q ss_pred hhCcHHHHHHHHHHHHHhccccCCCCCcchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhchHHHHHHHHHHHHhcC
Q psy9209 8 KLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQ 87 (349)
Q Consensus 8 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~ 87 (349)
..+++.+|.....+.+++.|... .+....|..+.+.|..++|..+++..-...+++... +..+..+|.
T Consensus 21 d~~qfkkal~~~~kllkk~Pn~~---------~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~t---Lq~l~~~y~ 88 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKKHPNAL---------YAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLT---LQFLQNVYR 88 (932)
T ss_pred hhHHHHHHHHHHHHHHHHCCCcH---------HHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHH---HHHHHHHHH
Confidence 45788899999888886555443 567778888999999999998777766666666555 444445577
Q ss_pred CCcchHHHHHHHHHHHhhCcccHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCcccHHHHHHHHHHH-HHhCCHH-----
Q psy9209 88 PDESSSQAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTY-EILRLPY----- 161 (349)
Q Consensus 88 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~-~~~~~~~----- 161 (349)
..|++++|..+|++++..+|. ......+-.+|.+.+.|.+-.+.--+..+..|+.+-.++....+. ......+
T Consensus 89 d~~~~d~~~~~Ye~~~~~~P~-eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slilqs~~~~~~~~~~ 167 (932)
T KOG2053|consen 89 DLGKLDEAVHLYERANQKYPS-EELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLILQSIFSENELLDP 167 (932)
T ss_pred HHhhhhHHHHHHHHHHhhCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHhccCCcccccc
Confidence 779999999999999999999 777788888888888887766666666667787765544444433 3333322
Q ss_pred ----HHHHHHHHHHhcC-CCChH-HHHHHHHHHHHhhCHHHHHHHHHHH-Hcc-ccccHHHHHHHHHHHHhcCcHHHHHH
Q psy9209 162 ----YGLYYYKQAHMVR-PNDPR-MLTALGEAFEKQEKISEAMKCYNKS-RAI-GDADGKALFKLAKLYDKLNETEAAAD 233 (349)
Q Consensus 162 ----~A~~~~~~~~~~~-~~~~~-~~~~l~~~~~~~~~~~~A~~~~~~a-~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~ 233 (349)
-|....++.++.. +-... =....-.++..+|++++|...+..- .+. .+.+...-......+...+++.+-.+
T Consensus 168 i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~ 247 (932)
T KOG2053|consen 168 ILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFE 247 (932)
T ss_pred hhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHH
Confidence 3455566666554 22211 1223345666789999999998432 233 34444444556677788889998888
Q ss_pred HHHHHHhcccc
Q psy9209 234 LFMEFVSKLDT 244 (349)
Q Consensus 234 ~~~~~~~~~~~ 244 (349)
...+++...++
T Consensus 248 l~~~Ll~k~~D 258 (932)
T KOG2053|consen 248 LSSRLLEKGND 258 (932)
T ss_pred HHHHHHHhCCc
Confidence 88888888776
No 202
>KOG4555|consensus
Probab=98.84 E-value=4.3e-07 Score=61.30 Aligned_cols=96 Identities=14% Similarity=0.040 Sum_probs=55.4
Q ss_pred HHHHHHHhhCHHHHHHHHHHHHccccccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCCCCCcchHHHHHHHHH
Q psy9209 184 LGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLAN 263 (349)
Q Consensus 184 l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 263 (349)
.|..+...|+.+.|++.|.+++.+.|..+.+|.+.+..+.-+|+.++|+..+++++++... .......++...|.
T Consensus 49 ~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~-----~trtacqa~vQRg~ 123 (175)
T KOG4555|consen 49 KAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGD-----QTRTACQAFVQRGL 123 (175)
T ss_pred HHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCc-----cchHHHHHHHHHHH
Confidence 4555555566666666666666666666666666666666666666666666666655433 12223445555666
Q ss_pred HHHHhCCHHHHHHHHHHHHcc
Q psy9209 264 HHLKANNLDTAYKCAQKCLQH 284 (349)
Q Consensus 264 ~~~~~g~~~~A~~~~~~a~~~ 284 (349)
+|..+|+-+.|..-|+.+-++
T Consensus 124 lyRl~g~dd~AR~DFe~AA~L 144 (175)
T KOG4555|consen 124 LYRLLGNDDAARADFEAAAQL 144 (175)
T ss_pred HHHHhCchHHHHHhHHHHHHh
Confidence 666666666666666655544
No 203
>KOG2471|consensus
Probab=98.80 E-value=3.1e-06 Score=70.24 Aligned_cols=265 Identities=14% Similarity=0.095 Sum_probs=186.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhhhhchHHHHHHHHHHHHhcCCCcchHHHHHHHHHHH-hhC------cc--cHHHH
Q psy9209 43 KYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDESSSQAVLYFQRAL-KLN------PN--YLGVW 113 (349)
Q Consensus 43 ~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~-~~~------~~--~~~~~ 113 (349)
......+.+..+...+....+.++....+.+.+..+-..+ ++-.|++.+|.+.+...- ... |. ....|
T Consensus 210 ~ykVr~llq~~~Lk~~krevK~vmn~a~~s~~~l~LKsq~---eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~ 286 (696)
T KOG2471|consen 210 LYKVRFLLQTRNLKLAKREVKHVMNIAQDSSMALLLKSQL---EYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFN 286 (696)
T ss_pred HhhHHHHHHHHHHHHHHHhhhhhhhhcCCCcHHHHHHHHH---HHHhcchHHHHHHHHhcccccccCccccchhhhheee
Confidence 3444555666777777777777766666666664444444 334599999998876531 112 22 22356
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHh---------Cc---------ccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC
Q psy9209 114 TLLGHEYMEMKNTNAAIQCYRQAIEI---------NN---------LDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRP 175 (349)
Q Consensus 114 ~~la~~~~~~~~~~~A~~~~~~a~~~---------~~---------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 175 (349)
.++|.+++++|.|.-+..+|.++++. .| ......++.|..|...|++-.|.++|.++.....
T Consensus 287 NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh 366 (696)
T KOG2471|consen 287 NNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFH 366 (696)
T ss_pred cCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHh
Confidence 89999999999999999999999961 11 2357889999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHhhC-------------------------------------------------HHHHHHHHHHHHc
Q psy9209 176 NDPRMLTALGEAFEKQEK-------------------------------------------------ISEAMKCYNKSRA 206 (349)
Q Consensus 176 ~~~~~~~~l~~~~~~~~~-------------------------------------------------~~~A~~~~~~a~~ 206 (349)
.+|..|..++.+.....+ .+=|.-+++.++-
T Consensus 367 ~nPrlWLRlAEcCima~~~~l~ee~~~s~s~~~i~~~vig~g~rr~~m~~~nt~~~~~qS~~~p~~slefA~vCLrnal~ 446 (696)
T KOG2471|consen 367 RNPRLWLRLAECCIMALQKGLLEEGNSSLSRSEIRVHVIGKGNRRQLMIEENTYVELAQSNQLPKLSLEFARVCLRNALY 446 (696)
T ss_pred cCcHHHHHHHHHHHHHhhhhhhhhccCCcccccceeeeecccchhheeecccceeccccccCCCccccHHHHHHHHhhhh
Confidence 999999999998863210 1335556666553
Q ss_pred cccc----------------------------------------------c-----------HHHHHHHHHHHHhcCcHH
Q psy9209 207 IGDA----------------------------------------------D-----------GKALFKLAKLYDKLNETE 229 (349)
Q Consensus 207 ~~~~----------------------------------------------~-----------~~~~~~l~~~~~~~~~~~ 229 (349)
+-|. . ..++...+.+-..+|+.-
T Consensus 447 Ll~e~q~~~~~~~~a~ns~~~g~~~e~~e~~~t~~Sk~h~gd~~~~~p~ssp~~~e~leNm~~ai~A~~ayV~L~Lgd~i 526 (696)
T KOG2471|consen 447 LLNEKQDLGSILSVAMNSTKEGSSSEHEEGNTTTDSKEHKGDMSQEIPQSSPSAFEDLENMRQAIFANMAYVELELGDPI 526 (696)
T ss_pred cCchhhcchhhhhhhccccccCCCCcCCCCCCCcchhcCCCCCCccCCCCCcchHHHHHHHHHHHHHHHHHHHHHhcChh
Confidence 3110 0 234556777788999999
Q ss_pred HHHHHHHHHHhcccccCCCCCCcchHHHHHHHHHHH-----HHhCCHHHHHHHHHHHH------c---------------
Q psy9209 230 AAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHH-----LKANNLDTAYKCAQKCL------Q--------------- 283 (349)
Q Consensus 230 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-----~~~g~~~~A~~~~~~a~------~--------------- 283 (349)
.|+..-.+.+.... ...++..||.+| .-+.+..+|..++.-.+ .
T Consensus 527 ~AL~~a~kLLq~~~----------lS~~~kfLGHiYAaEAL~lldr~seA~~HL~p~~~~~~~f~~~~n~~Df~~~~~~~ 596 (696)
T KOG2471|consen 527 KALSAATKLLQLAD----------LSKIYKFLGHIYAAEALCLLDRPSEAGAHLSPYLLGQDDFKLPYNQEDFDQWWKHT 596 (696)
T ss_pred hHHHHHHHHHhhhh----------hhhHHHHHHHHHHHHHHHHcCChhhhhhccChhhcCCcccccccchhhhhhhhccc
Confidence 99999999888643 456666666655 45577888877665411 0
Q ss_pred --ccCC---------------hHHHHHHHHHHHHHcCCCCCchhHHHHhhhcCC
Q psy9209 284 --HEET---------------AEEAKSLLRSIAQKRQPDESSSQPMECAVVLDP 320 (349)
Q Consensus 284 --~~~~---------------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p 320 (349)
++|+ .......++.++..+|++++|..++..+..+-|
T Consensus 597 e~l~~s~~r~~q~~~~sv~~Ar~v~~~nLa~a~alq~~~dqAk~ll~~aatl~h 650 (696)
T KOG2471|consen 597 ETLDPSTGRTRQSVFLSVEEARGVLFANLAAALALQGHHDQAKSLLTHAATLLH 650 (696)
T ss_pred cccCCcCCCCcccccCCHHHHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhh
Confidence 0110 134457889999999999999999988887766
No 204
>KOG4555|consensus
Probab=98.80 E-value=6.9e-07 Score=60.35 Aligned_cols=86 Identities=16% Similarity=0.168 Sum_probs=42.4
Q ss_pred CCcchHHHHHHHHHHHhhCcccHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCccc----HHHHHHHHHHHHHhCCHHHH
Q psy9209 88 PDESSSQAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLD----YRAWYGLGQTYEILRLPYYG 163 (349)
Q Consensus 88 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~----~~~~~~l~~~~~~~~~~~~A 163 (349)
..|+.+.|++.|.+++.+.|..+.+|++.+..+.-+|+.++|+..+++++++.... -.++...|.+|...|+-+.|
T Consensus 55 E~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~dd~A 134 (175)
T KOG4555|consen 55 EAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGNDDAA 134 (175)
T ss_pred hccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCchHHH
Confidence 34555555555555555555555555555555555555555555555555543221 12344444455555555555
Q ss_pred HHHHHHHHhc
Q psy9209 164 LYYYKQAHMV 173 (349)
Q Consensus 164 ~~~~~~~~~~ 173 (349)
..-|+.+-++
T Consensus 135 R~DFe~AA~L 144 (175)
T KOG4555|consen 135 RADFEAAAQL 144 (175)
T ss_pred HHhHHHHHHh
Confidence 5555444443
No 205
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.79 E-value=3.6e-08 Score=81.68 Aligned_cols=69 Identities=13% Similarity=0.020 Sum_probs=55.4
Q ss_pred hCcccHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCcccHHH---HHHHHHHHHHhCCHHHHHHHHHHHHhc
Q psy9209 105 LNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRA---WYGLGQTYEILRLPYYGLYYYKQAHMV 173 (349)
Q Consensus 105 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~---~~~l~~~~~~~~~~~~A~~~~~~~~~~ 173 (349)
.+|+++.+++++|.+|...|++++|+..|+++++++|++..+ |+++|.+|..+|++++|+.++++++++
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 357777888888888888888888888888888888887744 888888888888888888888888876
No 206
>KOG1585|consensus
Probab=98.79 E-value=8.5e-07 Score=66.82 Aligned_cols=190 Identities=16% Similarity=0.104 Sum_probs=94.9
Q ss_pred HHHHHhcCChHHHHHHHHHHHHhCccc------HHHHHHHHHHHHHhCCHHHHHHHHHHHHhc-----CCCChHHHHHHH
Q psy9209 117 GHEYMEMKNTNAAIQCYRQAIEINNLD------YRAWYGLGQTYEILRLPYYGLYYYKQAHMV-----RPNDPRMLTALG 185 (349)
Q Consensus 117 a~~~~~~~~~~~A~~~~~~a~~~~~~~------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~l~ 185 (349)
+.+|...++|++|..++.++.+-..++ ..++-..+.+......+.++..+++++..+ .|+....-...+
T Consensus 38 AvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~GspdtAAmaleKA 117 (308)
T KOG1585|consen 38 AVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDTAAMALEKA 117 (308)
T ss_pred HHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcchHHHHHHHH
Confidence 444455555555555555555332222 122333344444455555555555555543 222222222233
Q ss_pred HHHHHhhCHHHHHHHHHHHHccccc------cHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCCCCCcchHHHHH
Q psy9209 186 EAFEKQEKISEAMKCYNKSRAIGDA------DGKALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFK 259 (349)
Q Consensus 186 ~~~~~~~~~~~A~~~~~~a~~~~~~------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (349)
--..+..++++|+.+|++++.+-.. -.+.+...++++.+..++++|-..+.+-...... ....+.....+.
T Consensus 118 ak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~---~~~y~~~~k~~v 194 (308)
T KOG1585|consen 118 AKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADK---CDAYNSQCKAYV 194 (308)
T ss_pred HHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHH---HhhcccHHHHHH
Confidence 3334556677777777777665221 1334455666777777777777666654433222 111122344555
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHccc----CChHHHHHHHHHHHHHcCCCCCchh
Q psy9209 260 YLANHHLKANNLDTAYKCAQKCLQHE----ETAEEAKSLLRSIAQKRQPDESSSQ 310 (349)
Q Consensus 260 ~l~~~~~~~g~~~~A~~~~~~a~~~~----~~~~~~~~~l~~~~~~~~~~~~A~~ 310 (349)
....++....+|..|..+++...++. |.+..+...|-..|- .|+.++...
T Consensus 195 a~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ayd-~gD~E~~~k 248 (308)
T KOG1585|consen 195 AAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAYD-EGDIEEIKK 248 (308)
T ss_pred HHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHhc-cCCHHHHHH
Confidence 55566666667777777777765542 333444444444333 455544433
No 207
>KOG1586|consensus
Probab=98.77 E-value=1.8e-06 Score=64.68 Aligned_cols=131 Identities=13% Similarity=0.109 Sum_probs=71.0
Q ss_pred CHHHHHHHHHHHHcccccc------HHHHHHHHHHHHhc-CcHHHHHHHHHHHHhcccccCCCCCCcchHHHHHHHHHHH
Q psy9209 193 KISEAMKCYNKSRAIGDAD------GKALFKLAKLYDKL-NETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHH 265 (349)
Q Consensus 193 ~~~~A~~~~~~a~~~~~~~------~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 265 (349)
++.+|+.++++++++..+. +..+..+|.+|... .++++|+.+|+++-+.... ..........+...+..-
T Consensus 88 ~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~---ees~ssANKC~lKvA~ya 164 (288)
T KOG1586|consen 88 DPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKG---EESVSSANKCLLKVAQYA 164 (288)
T ss_pred ChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcc---hhhhhhHHHHHHHHHHHH
Confidence 4555555555555443221 12234556666544 6666777777766654433 111112344555566666
Q ss_pred HHhCCHHHHHHHHHHHHcccCChH-------HHHHHHHHHHHHcCCCCCchhHHHHhhhcCCCCCCcc
Q psy9209 266 LKANNLDTAYKCAQKCLQHEETAE-------EAKSLLRSIAQKRQPDESSSQPMECAVVLDPVPPSTR 326 (349)
Q Consensus 266 ~~~g~~~~A~~~~~~a~~~~~~~~-------~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~ 326 (349)
...++|.+|+..|++.....-++. +....-|.|+....+.-.+...+++..+++|...+.+
T Consensus 165 a~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~dsR 232 (288)
T KOG1586|consen 165 AQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTDSR 232 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCcccccH
Confidence 666777777777777655433322 2233345566655666666666677777777655543
No 208
>KOG1585|consensus
Probab=98.76 E-value=6.8e-06 Score=62.12 Aligned_cols=214 Identities=15% Similarity=0.111 Sum_probs=123.2
Q ss_pred CCCcchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhchHHHHH---HHHHHHHhcCCCcchHHHHHHHHHHHhhCcc
Q psy9209 32 PPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKS---LLRSIAQKRQPDESSSQAVLYFQRALKLNPN 108 (349)
Q Consensus 32 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~---~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~ 108 (349)
.|+.......|..-+.+|....+|++|...+.++.+-..++...+. .+-..+........+.++..+++++
T Consensus 24 kad~dgaas~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKA------ 97 (308)
T KOG1585|consen 24 KADWDGAASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKA------ 97 (308)
T ss_pred CCCchhhHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH------
Confidence 3444444566667777777777777777777777754443322211 1111111222222333333333333
Q ss_pred cHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCh------HHHH
Q psy9209 109 YLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDP------RMLT 182 (349)
Q Consensus 109 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~------~~~~ 182 (349)
...|...|..+.|-..++++-+. ...-++++|+.+|++++.+...+. +.+.
T Consensus 98 --------s~lY~E~GspdtAAmaleKAak~---------------lenv~Pd~AlqlYqralavve~~dr~~ma~el~g 154 (308)
T KOG1585|consen 98 --------SELYVECGSPDTAAMALEKAAKA---------------LENVKPDDALQLYQRALAVVEEDDRDQMAFELYG 154 (308)
T ss_pred --------HHHHHHhCCcchHHHHHHHHHHH---------------hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 33455556666655555555442 334567777777777776533322 4455
Q ss_pred HHHHHHHHhhCHHHHHHHHHHHHcc------ccccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCCCCCcchHH
Q psy9209 183 ALGEAFEKQEKISEAMKCYNKSRAI------GDADGKALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFF 256 (349)
Q Consensus 183 ~l~~~~~~~~~~~~A~~~~~~a~~~------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (349)
..++++.+..++++|...+.+-... .++....+.....++....+|..|...++...++..- ..++...
T Consensus 155 k~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f-----~~sed~r 229 (308)
T KOG1585|consen 155 KCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAF-----LKSEDSR 229 (308)
T ss_pred HhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccc-----cChHHHH
Confidence 6778888888888888777765433 2333445556666677777999999999887665322 2333566
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHH
Q psy9209 257 AFKYLANHHLKANNLDTAYKCAQK 280 (349)
Q Consensus 257 ~~~~l~~~~~~~g~~~~A~~~~~~ 280 (349)
+..+|-..| ..|+.++....+..
T Consensus 230 ~lenLL~ay-d~gD~E~~~kvl~s 252 (308)
T KOG1585|consen 230 SLENLLTAY-DEGDIEEIKKVLSS 252 (308)
T ss_pred HHHHHHHHh-ccCCHHHHHHHHcC
Confidence 666665544 55777776665543
No 209
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.75 E-value=5.1e-08 Score=80.80 Aligned_cols=69 Identities=13% Similarity=0.021 Sum_probs=65.9
Q ss_pred hCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHH---HHHHHHHHHHhhCHHHHHHHHHHHHcc
Q psy9209 139 INNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRM---LTALGEAFEKQEKISEAMKCYNKSRAI 207 (349)
Q Consensus 139 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~A~~~~~~a~~~ 207 (349)
.+|+++..++++|.+|...|++++|+..|+++++++|++..+ |+++|.+|..+|++++|+.+++++++.
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 478899999999999999999999999999999999999855 999999999999999999999999997
No 210
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=98.75 E-value=2e-07 Score=67.14 Aligned_cols=67 Identities=25% Similarity=0.265 Sum_probs=41.2
Q ss_pred hHHHHHHHHHHHhhCcccHHHHHHHHHHHHhcCC----------hHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhC
Q psy9209 92 SSQAVLYFQRALKLNPNYLGVWTLLGHEYMEMKN----------TNAAIQCYRQAIEINNLDYRAWYGLGQTYEILR 158 (349)
Q Consensus 92 ~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~----------~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~ 158 (349)
++.|.+.++.....+|.+++.+++.|.++..+.+ +++|+.-|++++.++|+..++++.+|.+|...+
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A 83 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLA 83 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHH
Confidence 4666777777777777777777777766655433 345666666666667777777777776666544
No 211
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=98.74 E-value=3e-07 Score=66.19 Aligned_cols=94 Identities=18% Similarity=0.123 Sum_probs=73.0
Q ss_pred hHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCC----------HHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhC--
Q psy9209 126 TNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRL----------PYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEK-- 193 (349)
Q Consensus 126 ~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~----------~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-- 193 (349)
++.|.+.++.....+|.+++.+++-|.++..+.+ +++|+.-|++++.++|+...++.++|.+|...+.
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~ 86 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLT 86 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhc
Confidence 6788999999999999999999999988876644 4678888999999999999999999999987654
Q ss_pred ---------HHHHHHHHHHHHccccccHHHHHHHH
Q psy9209 194 ---------ISEAMKCYNKSRAIGDADGKALFKLA 219 (349)
Q Consensus 194 ---------~~~A~~~~~~a~~~~~~~~~~~~~l~ 219 (349)
|++|..+|+++...+|++......|.
T Consensus 87 ~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe 121 (186)
T PF06552_consen 87 PDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLE 121 (186)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHH
Confidence 67888899999999998766555443
No 212
>KOG1586|consensus
Probab=98.71 E-value=3.2e-05 Score=58.19 Aligned_cols=178 Identities=15% Similarity=0.109 Sum_probs=121.3
Q ss_pred HHhcCCHHHHHHHHHHHhhhhhchHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhh----C-c-ccHHHHHHHHHHHHh
Q psy9209 49 HLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDESSSQAVLYFQRALKL----N-P-NYLGVWTLLGHEYME 122 (349)
Q Consensus 49 ~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~----~-~-~~~~~~~~la~~~~~ 122 (349)
+.-.+.+++|.+.|.++-.... + .+++..|-..|.++-+. + . +....+...+.+|.+
T Consensus 24 fgg~~k~eeAadl~~~Aan~yk-----------l------aK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cykk 86 (288)
T KOG1586|consen 24 FGGSNKYEEAAELYERAANMYK-----------L------AKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCYKK 86 (288)
T ss_pred cCCCcchHHHHHHHHHHHHHHH-----------H------HHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhc
Confidence 3344578888888887643211 1 13334444444443322 1 1 123445555566554
Q ss_pred cCChHHHHHHHHHHHHhCcccH------HHHHHHHHHHHHh-CCHHHHHHHHHHHHhcCCCCh------HHHHHHHHHHH
Q psy9209 123 MKNTNAAIQCYRQAIEINNLDY------RAWYGLGQTYEIL-RLPYYGLYYYKQAHMVRPNDP------RMLTALGEAFE 189 (349)
Q Consensus 123 ~~~~~~A~~~~~~a~~~~~~~~------~~~~~l~~~~~~~-~~~~~A~~~~~~~~~~~~~~~------~~~~~l~~~~~ 189 (349)
+++++|+.++++++++..+-. ..+..+|.+|... .++++|+.+|+++-+...... ..+...+..-.
T Consensus 87 -~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa 165 (288)
T KOG1586|consen 87 -VDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAA 165 (288)
T ss_pred -cChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHH
Confidence 489999999999998755432 3355788888765 899999999999987644332 45666777778
Q ss_pred HhhCHHHHHHHHHHHHccccccH-------HHHHHHHHHHHhcCcHHHHHHHHHHHHhcccc
Q psy9209 190 KQEKISEAMKCYNKSRAIGDADG-------KALFKLAKLYDKLNETEAAADLFMEFVSKLDT 244 (349)
Q Consensus 190 ~~~~~~~A~~~~~~a~~~~~~~~-------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 244 (349)
..++|.+|+..|+++....-+++ ..++.-|.|++...+.-.+...+++..+++|.
T Consensus 166 ~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~ 227 (288)
T KOG1586|consen 166 QLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPA 227 (288)
T ss_pred HHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCc
Confidence 89999999999999887654443 34456677888888888899999999999997
No 213
>KOG2610|consensus
Probab=98.70 E-value=8.8e-06 Score=64.49 Aligned_cols=162 Identities=9% Similarity=-0.052 Sum_probs=117.9
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc-CCCCh---HHHHHHHHHHHHh
Q psy9209 116 LGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMV-RPNDP---RMLTALGEAFEKQ 191 (349)
Q Consensus 116 la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~---~~~~~l~~~~~~~ 191 (349)
-+.+....|++.+|...+++.++-.|.+.-++..--..+..+|+...-...+++.+.. +|+.| .+.-.++..+...
T Consensus 109 ~aai~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~ 188 (491)
T KOG2610|consen 109 KAAILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEEC 188 (491)
T ss_pred hHHHhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHh
Confidence 3455566788888888888888888888777777777778888888888888887766 55553 3444567777788
Q ss_pred hCHHHHHHHHHHHHccccccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCCCCCcchHHHHHHHHHHHHHhCCH
Q psy9209 192 EKISEAMKCYNKSRAIGDADGKALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNL 271 (349)
Q Consensus 192 ~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 271 (349)
|-|++|.+.-+++++++|.+..+....+.++...|++.++.+++.+.-..-.. ........|...+.++...+.+
T Consensus 189 g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~-----s~mlasHNyWH~Al~~iE~aey 263 (491)
T KOG2610|consen 189 GIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQ-----SWMLASHNYWHTALFHIEGAEY 263 (491)
T ss_pred ccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhh-----hhHHHhhhhHHHHHhhhcccch
Confidence 88888888888888888888888888888888888888888887765433221 1111234455667777777888
Q ss_pred HHHHHHHHHHH
Q psy9209 272 DTAYKCAQKCL 282 (349)
Q Consensus 272 ~~A~~~~~~a~ 282 (349)
+.|++.|.+-+
T Consensus 264 e~aleIyD~ei 274 (491)
T KOG2610|consen 264 EKALEIYDREI 274 (491)
T ss_pred hHHHHHHHHHH
Confidence 88888887654
No 214
>KOG2610|consensus
Probab=98.70 E-value=7.2e-06 Score=64.98 Aligned_cols=154 Identities=12% Similarity=-0.054 Sum_probs=129.1
Q ss_pred CCCcchHHHHHHHHHHHhhCcccHHHHHHHHHHHHhcCChHHHHHHHHHHHHh-Cccc---HHHHHHHHHHHHHhCCHHH
Q psy9209 87 QPDESSSQAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEI-NNLD---YRAWYGLGQTYEILRLPYY 162 (349)
Q Consensus 87 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~-~~~~---~~~~~~l~~~~~~~~~~~~ 162 (349)
.-.|++.+|....++.++..|.+..++..--..+..+|+...-...+++.+-. +++. ..+.-.++-.+...|-|++
T Consensus 114 ~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~d 193 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDD 193 (491)
T ss_pred hccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchh
Confidence 34689999999999999999999988888888999999999999999999876 5555 4445566778889999999
Q ss_pred HHHHHHHHHhcCCCChHHHHHHHHHHHHhhCHHHHHHHHHHHHcccccc----HHHHHHHHHHHHhcCcHHHHHHHHHHH
Q psy9209 163 GLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDAD----GKALFKLAKLYDKLNETEAAADLFMEF 238 (349)
Q Consensus 163 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~ 238 (349)
|.+..+++++++|.+.-+....+.++...|++.++.++..+.-..-... ..-|...+.++...+.++.|+++|.+-
T Consensus 194 AEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~e 273 (491)
T KOG2610|consen 194 AEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYDRE 273 (491)
T ss_pred HHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHHH
Confidence 9999999999999999999999999999999999999988765442211 223456788888899999999999865
Q ss_pred Hh
Q psy9209 239 VS 240 (349)
Q Consensus 239 ~~ 240 (349)
+-
T Consensus 274 i~ 275 (491)
T KOG2610|consen 274 IW 275 (491)
T ss_pred HH
Confidence 53
No 215
>KOG2300|consensus
Probab=98.68 E-value=0.00013 Score=60.86 Aligned_cols=123 Identities=13% Similarity=0.062 Sum_probs=75.5
Q ss_pred hhhHHhhC--cHHHHHHHHHHHHHhccccCCCCCcchhHHHHHHHHHHHH-hcCCHHHHHHHHHHHhhhh---hchH---
Q psy9209 3 NKLYDKLN--ETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHL-KANNLDTAYKCAQKCLQHE---ETAE--- 73 (349)
Q Consensus 3 a~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~~l~~~---~~~~--- 73 (349)
|..+...| +...++.+++.... -.+.....+.....+|.+++ ...+++.|...++++..+. |...
T Consensus 14 Ae~~rt~~PPkIkk~IkClqA~~~------~~is~~veart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~fydvK 87 (629)
T KOG2300|consen 14 AEHFRTSGPPKIKKCIKCLQAIFQ------FQISFLVEARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSFYDVK 87 (629)
T ss_pred HHHHhhcCChhHHHHHHHHHHHhc------cCChHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccHHhhh
Confidence 45556666 77888888877662 22222233456777777654 4677888999998887553 3321
Q ss_pred -HHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhCcccHH----HHHHHHHHHHhcCChHHHHHHH
Q psy9209 74 -EAKSLLRSIAQKRQPDESSSQAVLYFQRALKLNPNYLG----VWTLLGHEYMEMKNTNAAIQCY 133 (349)
Q Consensus 74 -~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~----~~~~la~~~~~~~~~~~A~~~~ 133 (349)
++...+..+...+. ..+..+...+++++++....+- ..+.++.++.-..++..|++.+
T Consensus 88 f~a~SlLa~lh~~~~--~s~~~~KalLrkaielsq~~p~wsckllfQLaql~~idkD~~sA~elL 150 (629)
T KOG2300|consen 88 FQAASLLAHLHHQLA--QSFPPAKALLRKAIELSQSVPYWSCKLLFQLAQLHIIDKDFPSALELL 150 (629)
T ss_pred hHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhhhccchhHHHHH
Confidence 22333444333332 2677888888888887765542 2356677777777777666653
No 216
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=98.66 E-value=7.4e-06 Score=68.53 Aligned_cols=194 Identities=20% Similarity=0.120 Sum_probs=123.7
Q ss_pred cchHHHHHHHHHHHhhCcccHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCc-----------------------c--cH
Q psy9209 90 ESSSQAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINN-----------------------L--DY 144 (349)
Q Consensus 90 ~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-----------------------~--~~ 144 (349)
.+++.-++..++|++++|+.+.++..++.- ......+|..+|+++++... . ..
T Consensus 182 Rnp~aRIkaA~eALei~pdCAdAYILLAEE--eA~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~Rdt~~~~ 259 (539)
T PF04184_consen 182 RNPQARIKAAKEALEINPDCADAYILLAEE--EASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWHRRDTNVLV 259 (539)
T ss_pred CCHHHHHHHHHHHHHhhhhhhHHHhhcccc--cccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhhccccchhh
Confidence 466666667777777777766666666542 12234556666666554311 0 13
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC--ChHHHHHHHHHHHHhhCHHHHHHHHHHHHcc-ccccHHHHHHHHHH
Q psy9209 145 RAWYGLGQTYEILRLPYYGLYYYKQAHMVRPN--DPRMLTALGEAFEKQEKISEAMKCYNKSRAI-GDADGKALFKLAKL 221 (349)
Q Consensus 145 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-~~~~~~~~~~l~~~ 221 (349)
.+...+|.+..++|+.++|++.++..++..|. +..+..++..++...+.|.++...+.+--++ -|+.+...+.-+.+
T Consensus 260 y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALL 339 (539)
T PF04184_consen 260 YAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALL 339 (539)
T ss_pred hhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHH
Confidence 45567899999999999999999999988775 3468889999999999999999999886544 35556555554443
Q ss_pred HHh-------------cCc---HHHHHHHHHHHHhcccccCCCCCCcchHHHHHHH------HHHHHHhCCHHHHHHHHH
Q psy9209 222 YDK-------------LNE---TEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYL------ANHHLKANNLDTAYKCAQ 279 (349)
Q Consensus 222 ~~~-------------~~~---~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l------~~~~~~~g~~~~A~~~~~ 279 (349)
..+ .|- -..|.+.+.++++.+|. .+..+..+ -.-..+.|+ .||+.+--
T Consensus 340 kaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPH---------Vp~YLLe~K~LilPPehilkrGD-SEAiaYAf 409 (539)
T PF04184_consen 340 KARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPH---------VPKYLLEMKSLILPPEHILKRGD-SEAIAYAF 409 (539)
T ss_pred HHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCC---------CchhhhccCCCCCChHHhcCCCc-HHHHHHHH
Confidence 322 121 23467888999999887 33333222 112344555 66776655
Q ss_pred HHHcccCChHHHHHHH
Q psy9209 280 KCLQHEETAEEAKSLL 295 (349)
Q Consensus 280 ~a~~~~~~~~~~~~~l 295 (349)
-.+..-...+.+..+|
T Consensus 410 ~hL~hWk~veGAL~lL 425 (539)
T PF04184_consen 410 FHLQHWKRVEGALNLL 425 (539)
T ss_pred HHHHHHhcCHhHHHHH
Confidence 5555444444444444
No 217
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=98.66 E-value=2.7e-05 Score=65.27 Aligned_cols=192 Identities=11% Similarity=0.050 Sum_probs=133.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhhhhchHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhCcc---------------
Q psy9209 44 YLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDESSSQAVLYFQRALKLNPN--------------- 108 (349)
Q Consensus 44 ~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~--------------- 108 (349)
.+.....+..+...-++.-+++++++|+..+++.+++. .......+|..+++++++....
T Consensus 173 ~IMq~AWRERnp~aRIkaA~eALei~pdCAdAYILLAE-----EeA~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~ 247 (539)
T PF04184_consen 173 EIMQKAWRERNPQARIKAAKEALEINPDCADAYILLAE-----EEASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFW 247 (539)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhhhhhhHHHhhccc-----ccccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchh
Confidence 45556677888999999999999999999998766652 1124567888888888764211
Q ss_pred ----------cHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCcc--cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc-CC
Q psy9209 109 ----------YLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNL--DYRAWYGLGQTYEILRLPYYGLYYYKQAHMV-RP 175 (349)
Q Consensus 109 ----------~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~ 175 (349)
...+...+|.+..+.|+.++|++.++..++..|. +..++.+|..++...+.|.++...+.+--++ -|
T Consensus 248 e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lp 327 (539)
T PF04184_consen 248 EAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLP 327 (539)
T ss_pred hhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCC
Confidence 1223477899999999999999999999987765 4678999999999999999999998886433 24
Q ss_pred CChHHHHHHHHHHHH-hhC---------------HHHHHHHHHHHHccccccHHHHHHHHH------HHHhcCcHHHHHH
Q psy9209 176 NDPRMLTALGEAFEK-QEK---------------ISEAMKCYNKSRAIGDADGKALFKLAK------LYDKLNETEAAAD 233 (349)
Q Consensus 176 ~~~~~~~~l~~~~~~-~~~---------------~~~A~~~~~~a~~~~~~~~~~~~~l~~------~~~~~~~~~~A~~ 233 (349)
..+...+.-+.+-.+ .++ -..|.+.+.+|++.+|.-+..+..+-. -..+.|+ .||+.
T Consensus 328 kSAti~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~YLLe~K~LilPPehilkrGD-SEAia 406 (539)
T PF04184_consen 328 KSATICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKYLLEMKSLILPPEHILKRGD-SEAIA 406 (539)
T ss_pred chHHHHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchhhhccCCCCCChHHhcCCCc-HHHHH
Confidence 444444443333222 111 134778899999999987776554321 2334454 55655
Q ss_pred HHHHHHhc
Q psy9209 234 LFMEFVSK 241 (349)
Q Consensus 234 ~~~~~~~~ 241 (349)
+---.+..
T Consensus 407 YAf~hL~h 414 (539)
T PF04184_consen 407 YAFFHLQH 414 (539)
T ss_pred HHHHHHHH
Confidence 54444443
No 218
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=98.62 E-value=1.8e-06 Score=69.79 Aligned_cols=133 Identities=13% Similarity=0.125 Sum_probs=72.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHH-hCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Q psy9209 112 VWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEI-LRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEK 190 (349)
Q Consensus 112 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 190 (349)
+|..+.....+.+..+.|..+|.+|.+..+....+|...|.+-+. .++.+.|..+|+.+++..|.+...|......+..
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~ 82 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIK 82 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 344444555555556666666666654444445555555655444 3444446666666666666666666666666666
Q ss_pred hhCHHHHHHHHHHHHccccccH---HHHHHHHHHHHhcCcHHHHHHHHHHHHhcccc
Q psy9209 191 QEKISEAMKCYNKSRAIGDADG---KALFKLAKLYDKLNETEAAADLFMEFVSKLDT 244 (349)
Q Consensus 191 ~~~~~~A~~~~~~a~~~~~~~~---~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 244 (349)
.|+.+.|..+|++++..-|... .+|......-...|+.+....+.+++.+..|.
T Consensus 83 ~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~ 139 (280)
T PF05843_consen 83 LNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPE 139 (280)
T ss_dssp TT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTT
T ss_pred hCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhh
Confidence 6666666666666665543322 45555555556666666666666666555544
No 219
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=98.61 E-value=2.7e-06 Score=68.78 Aligned_cols=141 Identities=13% Similarity=0.065 Sum_probs=108.2
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH-hhCHHHHHHHHHHHHccccccHHHHHHHHHHHH
Q psy9209 145 RAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEK-QEKISEAMKCYNKSRAIGDADGKALFKLAKLYD 223 (349)
Q Consensus 145 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~ 223 (349)
-+|..+.....+.+..+.|..+|.++.+..+....+|...|.+-.. .++.+.|...|+.+++..|.+...|......+.
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~ 81 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLI 81 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 3677777888888888999999999987666677888888888666 455555999999999998988898888888888
Q ss_pred hcCcHHHHHHHHHHHHhcccccCCCCCCcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHcccCChHHH
Q psy9209 224 KLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEA 291 (349)
Q Consensus 224 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 291 (349)
..|+.+.|..+|++++...+. ......+|......-...|+.+......+++.+..|.....
T Consensus 82 ~~~d~~~aR~lfer~i~~l~~------~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~~~ 143 (280)
T PF05843_consen 82 KLNDINNARALFERAISSLPK------EKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDNSL 143 (280)
T ss_dssp HTT-HHHHHHHHHHHCCTSSC------HHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-HH
T ss_pred HhCcHHHHHHHHHHHHHhcCc------hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhhHH
Confidence 999999999999999887554 11134678888888888899998888888888887774443
No 220
>KOG2300|consensus
Probab=98.57 E-value=0.00019 Score=60.03 Aligned_cols=224 Identities=15% Similarity=0.121 Sum_probs=156.5
Q ss_pred hcCCHHHHHHHHHHHhhhhhc------hHHH-----HHHHHHHHHhcCCCcchHHHHHHHHHHHhh---Ccc-------c
Q psy9209 51 KANNLDTAYKCAQKCLQHEET------AEEA-----KSLLRSIAQKRQPDESSSQAVLYFQRALKL---NPN-------Y 109 (349)
Q Consensus 51 ~~~~~~~A~~~~~~~l~~~~~------~~~~-----~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~---~~~-------~ 109 (349)
..|-+++|.++-++++..... .... ...+..+..+..-.|++.+|++....+.+. .|. .
T Consensus 287 ~~gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~ 366 (629)
T KOG2300|consen 287 PAGYFKKAQKYTDEAIKQTEKLKQADLMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHE 366 (629)
T ss_pred hhHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhH
Confidence 457788888888888754211 1111 122333444445579999999988877664 343 2
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHhCcc-c--HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCh--------
Q psy9209 110 LGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNL-D--YRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDP-------- 178 (349)
Q Consensus 110 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-------- 178 (349)
+..+..+|......|.++.|...|..+.+.... + ..+..++|.+|.+.|+-+.--+.++. +.|.+.
T Consensus 367 ~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL~~~~~ed~y~~ld~---i~p~nt~s~ssq~l 443 (629)
T KOG2300|consen 367 AQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISYLRIGDAEDLYKALDL---IGPLNTNSLSSQRL 443 (629)
T ss_pred HHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHhccHHHHHHHHHh---cCCCCCCcchHHHH
Confidence 456688888888999999999999999886432 2 34456889999998876654444443 344422
Q ss_pred --HHHHHHHHHHHHhhCHHHHHHHHHHHHccccc------cHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCCCC
Q psy9209 179 --RMLTALGEAFEKQEKISEAMKCYNKSRAIGDA------DGKALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPD 250 (349)
Q Consensus 179 --~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 250 (349)
.+++..|...+.++++.+|...+.+.++.... .+-.+..+|.+....|+..++.+..+-++..... +.+
T Consensus 444 ~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed~~rL~a~~LvLLs~v~lslgn~~es~nmvrpamqlAkK---i~D 520 (629)
T KOG2300|consen 444 EASILYVYGLFAFKQNDLNEAKRFLRETLKMANAEDLNRLTACSLVLLSHVFLSLGNTVESRNMVRPAMQLAKK---IPD 520 (629)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHhcchHHHHhccchHHHHHhc---CCC
Confidence 45677788888999999999999999988521 2345667899999999999999999999887766 444
Q ss_pred CcchHHHHHHHHHHHHHhCC--HHHHHHHHHH
Q psy9209 251 KTCGFFAFKYLANHHLKANN--LDTAYKCAQK 280 (349)
Q Consensus 251 ~~~~~~~~~~l~~~~~~~g~--~~~A~~~~~~ 280 (349)
.+........+-.++...|+ -+...+.+.+
T Consensus 521 i~vqLws~si~~~L~~a~g~~~~~~e~e~~~~ 552 (629)
T KOG2300|consen 521 IPVQLWSSSILTDLYQALGEKGNEMENEAFRK 552 (629)
T ss_pred chHHHHHHHHHHHHHHHhCcchhhHHHHHHHH
Confidence 44455555667778888887 5555555544
No 221
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=98.57 E-value=0.00028 Score=58.61 Aligned_cols=53 Identities=9% Similarity=0.018 Sum_probs=47.1
Q ss_pred HHHHHHhCCHHHHHHHHHHHHcccCChHHHHHHHHHHHHHcCCCCCchhHHHHh
Q psy9209 262 ANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDESSSQPMECA 315 (349)
Q Consensus 262 ~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 315 (349)
|..++.+|++.++.-+-.=..++.| ++.++..+|.|.....++++|..++...
T Consensus 469 AEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 469 AEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred HHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 5567889999999998888889999 8999999999999999999999988763
No 222
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=98.53 E-value=5.9e-05 Score=62.23 Aligned_cols=189 Identities=15% Similarity=0.113 Sum_probs=132.7
Q ss_pred cHHHHHHHHHHHHhcCChHHHHHHHHHHHHh----CcccHHHHHHHHHHHHH---hCCHHHHHHHHHH-HHhcCCCChHH
Q psy9209 109 YLGVWTLLGHEYMEMKNTNAAIQCYRQAIEI----NNLDYRAWYGLGQTYEI---LRLPYYGLYYYKQ-AHMVRPNDPRM 180 (349)
Q Consensus 109 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~----~~~~~~~~~~l~~~~~~---~~~~~~A~~~~~~-~~~~~~~~~~~ 180 (349)
.+++..++-..|....+|+.-+++.+..-.+ -++.+.+...+|.++.+ .|+.++|+..+.. .....+.+++.
T Consensus 140 s~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~ 219 (374)
T PF13281_consen 140 SPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDT 219 (374)
T ss_pred ChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHH
Confidence 3456677777899999999999888887665 44567777888888888 8999999999999 55567778899
Q ss_pred HHHHHHHHHHh---------hCHHHHHHHHHHHHccccccHHHHHHHHHHHHhcCcHHHHHHHHHHHH-hccccc--CCC
Q psy9209 181 LTALGEAFEKQ---------EKISEAMKCYNKSRAIGDADGKALFKLAKLYDKLNETEAAADLFMEFV-SKLDTF--AAP 248 (349)
Q Consensus 181 ~~~l~~~~~~~---------~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~~~~~~--~~~ 248 (349)
+..+|.+|... ...++|+.+|.++.+.+|+ ...=.+++.++...|...+.....++.. .+..-. ...
T Consensus 220 ~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~-~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~ 298 (374)
T PF13281_consen 220 LGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPD-YYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGS 298 (374)
T ss_pred HHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCcc-ccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcc
Confidence 99999988642 3478999999999999964 3444556666666665433332222222 111100 002
Q ss_pred CCCcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHcccCChHHHHHHHHHH
Q psy9209 249 PDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSI 298 (349)
Q Consensus 249 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~ 298 (349)
.......+.+-.++.+..-.|++++|...+++++...|..-.....+..+
T Consensus 299 ~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W~l~St~~ni 348 (374)
T PF13281_consen 299 LEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAWELESTLENI 348 (374)
T ss_pred ccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcchhHHHHHHHH
Confidence 22334566667788888889999999999999999987665544444443
No 223
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=98.51 E-value=3.9e-07 Score=50.57 Aligned_cols=42 Identities=26% Similarity=0.511 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHhCcccHHHHHHHHH
Q psy9209 111 GVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQ 152 (349)
Q Consensus 111 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~ 152 (349)
.++..+|.+|...|++++|+..|+++++.+|+++.+|..+|.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 345556666666666666666666666666666666655553
No 224
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=98.50 E-value=0.00018 Score=60.76 Aligned_cols=146 Identities=16% Similarity=0.057 Sum_probs=99.1
Q ss_pred CChHHHHHHHHHHHHhhCHHHHHHHHHHHHcccc----ccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccccC-----
Q psy9209 176 NDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGD----ADGKALFKLAKLYDKLNETEAAADLFMEFVSKLDTFA----- 246 (349)
Q Consensus 176 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~----~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~----- 246 (349)
.....|...+.+..+.|+++.|...+.++....+ ..+.+.+..+.+....|+..+|+..++..+.......
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~ 223 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSIS 223 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcccccc
Confidence 3445666677777777777777777777666431 1355666667777777777777777766665111100
Q ss_pred --------------------CCCCCcchHHHHHHHHHHHHHh------CCHHHHHHHHHHHHcccCChHHHHHHHHHHHH
Q psy9209 247 --------------------APPDKTCGFFAFKYLANHHLKA------NNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQ 300 (349)
Q Consensus 247 --------------------~~~~~~~~~~~~~~l~~~~~~~------g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~ 300 (349)
..........++..+|...... +..+++...|.++++..|+...++..+|..+.
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~ 303 (352)
T PF02259_consen 224 NAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFND 303 (352)
T ss_pred HHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHH
Confidence 0111233567888888888888 89999999999999999999999988887765
Q ss_pred HcCCC-----------------CCchhHHHHhhhcCCC
Q psy9209 301 KRQPD-----------------ESSSQPMECAVVLDPV 321 (349)
Q Consensus 301 ~~~~~-----------------~~A~~~~~~a~~~~p~ 321 (349)
..-+. ..|+..|-+++...|.
T Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~ai~~y~~al~~~~~ 341 (352)
T PF02259_consen 304 KLLESDPREKEESSQEDRSEYLEQAIEGYLKALSLGSK 341 (352)
T ss_pred HHHHhhhhcccccchhHHHHHHHHHHHHHHHHHhhCCC
Confidence 43221 2477888888888877
No 225
>KOG4642|consensus
Probab=98.50 E-value=1.5e-06 Score=65.36 Aligned_cols=93 Identities=17% Similarity=0.116 Sum_probs=71.6
Q ss_pred HHHHhcCCCcchHHHHHHHHHHHhhCcccHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCH
Q psy9209 81 SIAQKRQPDESSSQAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLP 160 (349)
Q Consensus 81 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~ 160 (349)
.-+..++....+..|+.+|.+++.++|..+..+.+.+.++++..+++.+.....+++++.|+....++.+|........+
T Consensus 15 E~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~ 94 (284)
T KOG4642|consen 15 EQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGY 94 (284)
T ss_pred hccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccc
Confidence 33445555667778888888888888887777788888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHHhc
Q psy9209 161 YYGLYYYKQAHMV 173 (349)
Q Consensus 161 ~~A~~~~~~~~~~ 173 (349)
++|+..+.++..+
T Consensus 95 ~eaI~~Lqra~sl 107 (284)
T KOG4642|consen 95 DEAIKVLQRAYSL 107 (284)
T ss_pred cHHHHHHHHHHHH
Confidence 8888888877554
No 226
>KOG4642|consensus
Probab=98.50 E-value=3.9e-06 Score=63.14 Aligned_cols=87 Identities=21% Similarity=0.145 Sum_probs=42.4
Q ss_pred HHHHhcCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhCHHHH
Q psy9209 118 HEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEA 197 (349)
Q Consensus 118 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 197 (349)
..+..-.+|..|+.+|.+++.++|..+..|.+.+.++.+..+++.+..-..+++++.|+....++.+|.+......+++|
T Consensus 18 nk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~ea 97 (284)
T KOG4642|consen 18 NKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEA 97 (284)
T ss_pred ccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHH
Confidence 33444444444444444444444444444444444444444444444444444444444444444444444444444444
Q ss_pred HHHHHHH
Q psy9209 198 MKCYNKS 204 (349)
Q Consensus 198 ~~~~~~a 204 (349)
+..+.++
T Consensus 98 I~~Lqra 104 (284)
T KOG4642|consen 98 IKVLQRA 104 (284)
T ss_pred HHHHHHH
Confidence 4444444
No 227
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=98.45 E-value=0.00055 Score=57.90 Aligned_cols=120 Identities=16% Similarity=0.100 Sum_probs=91.1
Q ss_pred CcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC----CChHHHHHHHHHHHHhhCHHHHHHHHHHHHcc---cc---
Q psy9209 140 NNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRP----NDPRMLTALGEAFEKQEKISEAMKCYNKSRAI---GD--- 209 (349)
Q Consensus 140 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~---~~--- 209 (349)
.......|...+.+..+.|.++.|...+.++....+ ..+.+.+..+.++...|+..+|+..++..+.. .+
T Consensus 142 ~~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~ 221 (352)
T PF02259_consen 142 PEELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDS 221 (352)
T ss_pred hhHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcccc
Confidence 334567788888888888888888888888877542 24677777888888888888888888877761 00
Q ss_pred ----------------------------ccHHHHHHHHHHHHhc------CcHHHHHHHHHHHHhcccccCCCCCCcchH
Q psy9209 210 ----------------------------ADGKALFKLAKLYDKL------NETEAAADLFMEFVSKLDTFAAPPDKTCGF 255 (349)
Q Consensus 210 ----------------------------~~~~~~~~l~~~~~~~------~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 255 (349)
....++..+|...... +..+++...|.+++...|. ..
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~---------~~ 292 (352)
T PF02259_consen 222 ISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPS---------WE 292 (352)
T ss_pred ccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChh---------HH
Confidence 0134556667766666 8889999999999999998 77
Q ss_pred HHHHHHHHHHHHh
Q psy9209 256 FAFKYLANHHLKA 268 (349)
Q Consensus 256 ~~~~~l~~~~~~~ 268 (349)
.+|+.+|..+...
T Consensus 293 k~~~~~a~~~~~~ 305 (352)
T PF02259_consen 293 KAWHSWALFNDKL 305 (352)
T ss_pred HHHHHHHHHHHHH
Confidence 8898888887655
No 228
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=98.44 E-value=5.4e-07 Score=50.00 Aligned_cols=42 Identities=21% Similarity=0.147 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHcccCChHHHHHHHHH
Q psy9209 256 FAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRS 297 (349)
Q Consensus 256 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~ 297 (349)
.++..+|.+|...|++++|+..|+++++.+|+++.++..++.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 578899999999999999999999999999999999998875
No 229
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=98.40 E-value=0.00019 Score=59.30 Aligned_cols=32 Identities=16% Similarity=0.071 Sum_probs=15.5
Q ss_pred CcchHHHHHHHHH-HHhhCcccHHHHHHHHHHH
Q psy9209 89 DESSSQAVLYFQR-ALKLNPNYLGVWTLLGHEY 120 (349)
Q Consensus 89 ~~~~~~A~~~~~~-~~~~~~~~~~~~~~la~~~ 120 (349)
.|+.++|+..+.. .....+.+++++..+|.+|
T Consensus 195 ~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIy 227 (374)
T PF13281_consen 195 PGDREKALQILLPVLESDENPDPDTLGLLGRIY 227 (374)
T ss_pred CCCHHHHHHHHHHHHhccCCCChHHHHHHHHHH
Confidence 4555555555555 2233344455555555544
No 230
>KOG3616|consensus
Probab=98.34 E-value=0.00017 Score=63.47 Aligned_cols=35 Identities=17% Similarity=0.058 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHcCCCCCchhHHHHhhhcCCCCC
Q psy9209 289 EEAKSLLRSIAQKRQPDESSSQPMECAVVLDPVPP 323 (349)
Q Consensus 289 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~ 323 (349)
++++..++..+...|++++|.+.|-.+++++.-+.
T Consensus 995 ~~vhlk~a~~ledegk~edaskhyveaiklntyni 1029 (1636)
T KOG3616|consen 995 GEVHLKLAMFLEDEGKFEDASKHYVEAIKLNTYNI 1029 (1636)
T ss_pred ccchhHHhhhhhhccchhhhhHhhHHHhhcccccc
Confidence 34445556666677888888888888888876554
No 231
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=98.33 E-value=6.2e-07 Score=46.29 Aligned_cols=32 Identities=28% Similarity=0.554 Sum_probs=16.6
Q ss_pred HHHHHhhCcccHHHHHHHHHHHHhcCChHHHH
Q psy9209 99 FQRALKLNPNYLGVWTLLGHEYMEMKNTNAAI 130 (349)
Q Consensus 99 ~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 130 (349)
|+++++++|+++.+|+++|.+|...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 44555555555555555555555555555543
No 232
>KOG0530|consensus
Probab=98.32 E-value=0.00071 Score=52.13 Aligned_cols=237 Identities=9% Similarity=0.074 Sum_probs=170.0
Q ss_pred HHhcCCHHHHHHHHHHHhhhhhchHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhCcccHHHHHHHHHHHHhcCChH-
Q psy9209 49 HLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDESSSQAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTN- 127 (349)
Q Consensus 49 ~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~- 127 (349)
+.....-..|+..-+.++.++|.+-.+|.....+...+. .+..+-++++.++++.+|++..+|...-.+....|++.
T Consensus 53 ~~~~E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~--~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~ 130 (318)
T KOG0530|consen 53 IAKNEKSPRALQLTEDAIRLNPANYTVWQYRRVILRHLM--SDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSF 130 (318)
T ss_pred HhccccCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhH--HHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCccc
Confidence 334455678999999999999999888877666655543 57888899999999999999999999999999999988
Q ss_pred HHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH------hhCHHHHHHHH
Q psy9209 128 AAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEK------QEKISEAMKCY 201 (349)
Q Consensus 128 ~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~------~~~~~~A~~~~ 201 (349)
.-++..+.++..+.++..+|...-.+....+.++.-+.+..+.++.+--+-.+|...-.+... .-..+.-+.+.
T Consensus 131 rELef~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~NNSAWN~Ryfvi~~~~~~~~~~~le~El~yt 210 (318)
T KOG0530|consen 131 RELEFTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDELAYADELLEEDIRNNSAWNQRYFVITNTKGVISKAELERELNYT 210 (318)
T ss_pred chHHHHHHHHhccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccchhheeeEEEEeccCCccHHHHHHHHHHH
Confidence 889999999999999999999999999999999999999999999877666666543222111 12244556778
Q ss_pred HHHHccccccHHHHHHHHHHHHh-cC--cHHHHHHHHHHHHhcccccCCCCCCcchHHHHHHHHHHHHH------hCCHH
Q psy9209 202 NKSRAIGDADGKALFKLAKLYDK-LN--ETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLK------ANNLD 272 (349)
Q Consensus 202 ~~a~~~~~~~~~~~~~l~~~~~~-~~--~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~------~g~~~ 272 (349)
.+.+...|++..+|..|.-++.. .| ....-.......+...|. ..+..+..+..+|.. .+.-+
T Consensus 211 ~~~I~~vP~NeSaWnYL~G~l~~d~gl~s~s~vv~f~~~l~~~~~~--------~sP~lla~l~d~~~e~~l~~~~~~~~ 282 (318)
T KOG0530|consen 211 KDKILLVPNNESAWNYLKGLLELDSGLSSDSKVVSFVENLYLQLPK--------RSPFLLAFLLDLYAEDALAYKSSAEE 282 (318)
T ss_pred HHHHHhCCCCccHHHHHHHHHHhccCCcCCchHHHHHHHHhhccCC--------CChhHHHHHHHHHHHHHhhccccchH
Confidence 88899999999999988877775 44 233444444444422222 145556666666522 12222
Q ss_pred ---HHHHHHHHHH-cccCChHHHHHHH
Q psy9209 273 ---TAYKCAQKCL-QHEETAEEAKSLL 295 (349)
Q Consensus 273 ---~A~~~~~~a~-~~~~~~~~~~~~l 295 (349)
+|...++..- +.+|-....|...
T Consensus 283 ~a~~a~~ly~~La~~~DpiR~nyW~~~ 309 (318)
T KOG0530|consen 283 LARKAVKLYEDLAIKVDPIRKNYWRHK 309 (318)
T ss_pred HHHHHHHHHHHHhhccCcHHHHHHHHH
Confidence 4555555543 5666555555443
No 233
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=98.32 E-value=6.4e-07 Score=46.23 Aligned_cols=32 Identities=25% Similarity=0.261 Sum_probs=17.7
Q ss_pred HHHHHHhCcccHHHHHHHHHHHHHhCCHHHHH
Q psy9209 133 YRQAIEINNLDYRAWYGLGQTYEILRLPYYGL 164 (349)
Q Consensus 133 ~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 164 (349)
|+++++++|+++.+|+++|.+|...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 45555555555555555555555555555553
No 234
>KOG0545|consensus
Probab=98.30 E-value=1.9e-05 Score=59.82 Aligned_cols=101 Identities=16% Similarity=0.118 Sum_probs=82.6
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--------CCCCh----------HHHHHHHHHHHHhhCHHHHHHHHHHHH
Q psy9209 144 YRAWYGLGQTYEILRLPYYGLYYYKQAHMV--------RPNDP----------RMLTALGEAFEKQEKISEAMKCYNKSR 205 (349)
Q Consensus 144 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~----------~~~~~l~~~~~~~~~~~~A~~~~~~a~ 205 (349)
..++..-|.-++..|+|.+|...|..++.. .|.++ ..+.+++.|+...|+|-++++.....+
T Consensus 178 v~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL 257 (329)
T KOG0545|consen 178 VPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEIL 257 (329)
T ss_pred hHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHH
Confidence 345566677777777777777777766543 34433 567889999999999999999999999
Q ss_pred ccccccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccc
Q psy9209 206 AIGDADGKALFKLAKLYDKLNETEAAADLFMEFVSKLDT 244 (349)
Q Consensus 206 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 244 (349)
...|.+..+++..|.++...=+..+|...|.++++++|.
T Consensus 258 ~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldps 296 (329)
T KOG0545|consen 258 RHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPS 296 (329)
T ss_pred hcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChh
Confidence 999999999999999999999999999999999999887
No 235
>KOG4507|consensus
Probab=98.29 E-value=2e-05 Score=67.09 Aligned_cols=101 Identities=12% Similarity=-0.021 Sum_probs=88.6
Q ss_pred HHHhcCcHHHHHHHHHHHHhcccccCCCCCCcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHcccCChHHHHHHHHHHHH
Q psy9209 221 LYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQ 300 (349)
Q Consensus 221 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~ 300 (349)
.+...|+...|+.++..++...|.. ......+|+.+....|-.-+|-.++.+++.+..+.+-..+.+|..+.
T Consensus 616 ywr~~gn~~~a~~cl~~a~~~~p~~--------~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l 687 (886)
T KOG4507|consen 616 YWRAVGNSTFAIACLQRALNLAPLQ--------QDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYL 687 (886)
T ss_pred eeeecCCcHHHHHHHHHHhccChhh--------hcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHH
Confidence 3456799999999999999988862 34567789999999999999999999999999888889999999999
Q ss_pred HcCCCCCchhHHHHhhhcCCCCCCccccC
Q psy9209 301 KRQPDESSSQPMECAVVLDPVPPSTRSSK 329 (349)
Q Consensus 301 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~ 329 (349)
.+.+.+.|++.|+.|+.++|+++..-..+
T Consensus 688 ~l~~i~~a~~~~~~a~~~~~~~~~~~~~l 716 (886)
T KOG4507|consen 688 ALKNISGALEAFRQALKLTTKCPECENSL 716 (886)
T ss_pred HHhhhHHHHHHHHHHHhcCCCChhhHHHH
Confidence 99999999999999999999998765544
No 236
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=98.27 E-value=0.00017 Score=62.82 Aligned_cols=154 Identities=13% Similarity=-0.002 Sum_probs=118.8
Q ss_pred hcCChHHHHHHHHHHHHhCccc--HHH------HHHHHHHHH----HhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Q psy9209 122 EMKNTNAAIQCYRQAIEINNLD--YRA------WYGLGQTYE----ILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFE 189 (349)
Q Consensus 122 ~~~~~~~A~~~~~~a~~~~~~~--~~~------~~~l~~~~~----~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 189 (349)
-.|+-+.++..+.++.+. ++- +-+ |+.....+. .....+.|.+.+.......|+..-.++..|+++.
T Consensus 200 F~gdR~~GL~~L~~~~~~-~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~ 278 (468)
T PF10300_consen 200 FSGDRELGLRLLWEASKS-ENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNSALFLFFEGRLER 278 (468)
T ss_pred cCCcHHHHHHHHHHHhcc-CCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 358889999999998773 221 111 111111111 2446688999999999999999999999999999
Q ss_pred HhhCHHHHHHHHHHHHccccc----cHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCCCCCcchHHHHHHHHHHH
Q psy9209 190 KQEKISEAMKCYNKSRAIGDA----DGKALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHH 265 (349)
Q Consensus 190 ~~~~~~~A~~~~~~a~~~~~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 265 (349)
..|+.++|++.|++++..... ..-.++.++.++..+++|++|...+.+..+.+.-. .....+..|.++
T Consensus 279 ~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WS--------ka~Y~Y~~a~c~ 350 (468)
T PF10300_consen 279 LKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWS--------KAFYAYLAAACL 350 (468)
T ss_pred HhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccH--------HHHHHHHHHHHH
Confidence 999999999999999864333 23467889999999999999999999999865431 566677789999
Q ss_pred HHhCCH-------HHHHHHHHHHHcc
Q psy9209 266 LKANNL-------DTAYKCAQKCLQH 284 (349)
Q Consensus 266 ~~~g~~-------~~A~~~~~~a~~~ 284 (349)
...|+. ++|..++.++-..
T Consensus 351 ~~l~~~~~~~~~~~~a~~l~~~vp~l 376 (468)
T PF10300_consen 351 LMLGREEEAKEHKKEAEELFRKVPKL 376 (468)
T ss_pred HhhccchhhhhhHHHHHHHHHHHHHH
Confidence 999999 8888888887543
No 237
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=98.26 E-value=0.00024 Score=61.83 Aligned_cols=119 Identities=10% Similarity=-0.059 Sum_probs=69.6
Q ss_pred CChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCC----hHHHHHHHHHHHHhhCHHHHHH
Q psy9209 124 KNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPND----PRMLTALGEAFEKQEKISEAMK 199 (349)
Q Consensus 124 ~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~ 199 (349)
...+.|.+.+....+..|+..-..+..|+++...|+.++|++.|++++.....- .-.++.++.++..+++|++|..
T Consensus 247 ~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~ 326 (468)
T PF10300_consen 247 VPLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAE 326 (468)
T ss_pred CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHH
Confidence 345566666666666666666666666666666666666666666655322221 1345566666666666666666
Q ss_pred HHHHHHcccccc-HHHHHHHHHHHHhcCcH-------HHHHHHHHHHHhcc
Q psy9209 200 CYNKSRAIGDAD-GKALFKLAKLYDKLNET-------EAAADLFMEFVSKL 242 (349)
Q Consensus 200 ~~~~a~~~~~~~-~~~~~~l~~~~~~~~~~-------~~A~~~~~~~~~~~ 242 (349)
++.+..+.+.-. ....+..|.++...|+. ++|...+.++-...
T Consensus 327 ~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~ 377 (468)
T PF10300_consen 327 YFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLK 377 (468)
T ss_pred HHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHH
Confidence 666666654332 22334455566666666 66666666665543
No 238
>KOG1258|consensus
Probab=98.25 E-value=0.0024 Score=55.19 Aligned_cols=295 Identities=12% Similarity=0.027 Sum_probs=162.2
Q ss_pred HHHHHHHHHHHHhccccCCCCCcchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhchHHHHHHHHHHHHhcCCCcch
Q psy9209 13 EAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDESS 92 (349)
Q Consensus 13 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~ 92 (349)
+.+...|...+.+.|-.. -.|...|..-.+.|..+.+.+.|++++.--|-..+.|..+...... ..|+.
T Consensus 62 ~~~r~~y~~fL~kyPl~~---------gyW~kfA~~E~klg~~~~s~~Vfergv~aip~SvdlW~~Y~~f~~n--~~~d~ 130 (577)
T KOG1258|consen 62 DALREVYDIFLSKYPLCY---------GYWKKFADYEYKLGNAENSVKVFERGVQAIPLSVDLWLSYLAFLKN--NNGDP 130 (577)
T ss_pred HHHHHHHHHHHhhCccHH---------HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhc--cCCCH
Confidence 344455555553333332 4688888888999999999999999999888777776555444333 34677
Q ss_pred HHHHHHHHHHHhhCccc---HHHHHHHHHHHHhcCChHHHHHHHHHHHHhC-----------------------------
Q psy9209 93 SQAVLYFQRALKLNPNY---LGVWTLLGHEYMEMKNTNAAIQCYRQAIEIN----------------------------- 140 (349)
Q Consensus 93 ~~A~~~~~~~~~~~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~----------------------------- 140 (349)
+.-...|++|......+ ...|-..-.....++++..-...|++.+++-
T Consensus 131 ~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP~~~~~~~f~~f~~~l~~~~~~~l~~~d~~ 210 (577)
T KOG1258|consen 131 ETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIPLHQLNRHFDRFKQLLNQNEEKILLSIDEL 210 (577)
T ss_pred HHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhcCChhhhcCHHHH
Confidence 77667777776543221 1111111111122222222222333222210
Q ss_pred --------------------------------------------------------------------------------
Q psy9209 141 -------------------------------------------------------------------------------- 140 (349)
Q Consensus 141 -------------------------------------------------------------------------------- 140 (349)
T Consensus 211 ~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~~fE~~IkrpYfhvk 290 (577)
T KOG1258|consen 211 IQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRWGFEEGIKRPYFHVK 290 (577)
T ss_pred HHHhhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhhhhccccccccC
Confidence
Q ss_pred ---cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhCHHHHHHHHHHHHcc-ccccHHHHH
Q psy9209 141 ---NLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAI-GDADGKALF 216 (349)
Q Consensus 141 ---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-~~~~~~~~~ 216 (349)
+.+...|......-...|+++...-.|++++--.......|...+......|+.+-|...+..+.+. .|..+.+..
T Consensus 291 pl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L 370 (577)
T KOG1258|consen 291 PLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHL 370 (577)
T ss_pred cccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHH
Confidence 0111223333333334555555555555555444445556666666666666666666666666555 455566666
Q ss_pred HHHHHHHhcCcHHHHHHHHHHHHhcccccCCCCCCcchHHHHHHHHHHHHHhCCHHHHH---HHHHHHHcccCCh---HH
Q psy9209 217 KLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAY---KCAQKCLQHEETA---EE 290 (349)
Q Consensus 217 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~---~~~~~a~~~~~~~---~~ 290 (349)
.-+.+....|++..|...+++.....|+ ...+-..-+....+.|+.+.+. .++.....-..+. ..
T Consensus 371 ~~a~f~e~~~n~~~A~~~lq~i~~e~pg---------~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~ 441 (577)
T KOG1258|consen 371 LEARFEESNGNFDDAKVILQRIESEYPG---------LVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEK 441 (577)
T ss_pred HHHHHHHhhccHHHHHHHHHHHHhhCCc---------hhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHH
Confidence 6666677777777777777777766665 5555555556666666666666 3332222211111 11
Q ss_pred HHHHHHHH-HHHcCCCCCchhHHHHhhhcCCCCCCccc
Q psy9209 291 AKSLLRSI-AQKRQPDESSSQPMECAVVLDPVPPSTRS 327 (349)
Q Consensus 291 ~~~~l~~~-~~~~~~~~~A~~~~~~a~~~~p~~~~~~~ 327 (349)
.....+.. +.-.++.+.|...+.++++..|.+...+.
T Consensus 442 l~~~~~r~~~~i~~d~~~a~~~l~~~~~~~~~~k~~~~ 479 (577)
T KOG1258|consen 442 LYVKFARLRYKIREDADLARIILLEANDILPDCKVLYL 479 (577)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhhhcCCccHHHHH
Confidence 11222222 33455667777777777777777665443
No 239
>KOG0376|consensus
Probab=98.24 E-value=2.2e-06 Score=71.12 Aligned_cols=109 Identities=11% Similarity=-0.004 Sum_probs=85.3
Q ss_pred HHHHHHHHhhCHHHHHHHHHHHHccccccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCCCCCcchHHHHHHHH
Q psy9209 183 ALGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLA 262 (349)
Q Consensus 183 ~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 262 (349)
..+.-.+.-+.++.|+..|.++++++|+.+..+.+.+..+.+.+++..|+..+.++++.+|. ...+|+..|
T Consensus 9 ~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~---------~~K~Y~rrg 79 (476)
T KOG0376|consen 9 NEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPT---------YIKAYVRRG 79 (476)
T ss_pred hHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCch---------hhheeeecc
Confidence 34555566677888888888888888887777777777888888888888888888888777 677888888
Q ss_pred HHHHHhCCHHHHHHHHHHHHcccCChHHHHHHHHHHHH
Q psy9209 263 NHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQ 300 (349)
Q Consensus 263 ~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~ 300 (349)
.+....+++.+|+..|++.....|+.+.+...+..|..
T Consensus 80 ~a~m~l~~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~ 117 (476)
T KOG0376|consen 80 TAVMALGEFKKALLDLEKVKKLAPNDPDATRKIDECNK 117 (476)
T ss_pred HHHHhHHHHHHHHHHHHHhhhcCcCcHHHHHHHHHHHH
Confidence 88888888888888888888888888877777776654
No 240
>KOG0376|consensus
Probab=98.23 E-value=3.2e-06 Score=70.25 Aligned_cols=98 Identities=20% Similarity=0.245 Sum_probs=54.7
Q ss_pred CcchHHHHHHHHHHHhhCcccHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHHHHHHHHH
Q psy9209 89 DESSSQAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYK 168 (349)
Q Consensus 89 ~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 168 (349)
.+.++.|+..|.++++++|+.+..+.+.+..+.+.+++..|+.-+.++++.+|....+|+..|......+++.+|...|+
T Consensus 17 ~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~~A~~~l~ 96 (476)
T KOG0376|consen 17 DKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFKKALLDLE 96 (476)
T ss_pred cchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHHHHHHHHH
Confidence 34555555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHhcCCCChHHHHHHHH
Q psy9209 169 QAHMVRPNDPRMLTALGE 186 (349)
Q Consensus 169 ~~~~~~~~~~~~~~~l~~ 186 (349)
....+.|+++.+...+..
T Consensus 97 ~~~~l~Pnd~~~~r~~~E 114 (476)
T KOG0376|consen 97 KVKKLAPNDPDATRKIDE 114 (476)
T ss_pred HhhhcCcCcHHHHHHHHH
Confidence 555555555554444433
No 241
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=98.18 E-value=5.7e-06 Score=42.95 Aligned_cols=32 Identities=22% Similarity=0.526 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHhCcc
Q psy9209 111 GVWTLLGHEYMEMKNTNAAIQCYRQAIEINNL 142 (349)
Q Consensus 111 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 142 (349)
.+|+.+|.++..+|++++|+..|+++++++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 45566666666666666666666666666664
No 242
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=98.15 E-value=6.8e-06 Score=42.66 Aligned_cols=34 Identities=18% Similarity=0.228 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHcccCCh
Q psy9209 255 FFAFKYLANHHLKANNLDTAYKCAQKCLQHEETA 288 (349)
Q Consensus 255 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~ 288 (349)
+.+|+.+|.++..+|++++|+.+|+++++++|++
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 3578889999999999999999999999888864
No 243
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.14 E-value=0.00078 Score=53.04 Aligned_cols=153 Identities=16% Similarity=0.032 Sum_probs=107.6
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChH-HHHHHHHHH
Q psy9209 110 LGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPR-MLTALGEAF 188 (349)
Q Consensus 110 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~l~~~~ 188 (349)
.+.-+..+.-....|++.+|...|..++...|++..+...++.+|...|+.+.|...+...-........ .+......+
T Consensus 134 ~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll 213 (304)
T COG3118 134 EEEALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELL 213 (304)
T ss_pred HHHHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHH
Confidence 3445666777888999999999999999999999999999999999999999998887764322222111 111111333
Q ss_pred HHhhCHHHHHHHHHHHHccccccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCCCCCcchHHHHHHHHHHHHHh
Q psy9209 189 EKQEKISEAMKCYNKSRAIGDADGKALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKA 268 (349)
Q Consensus 189 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 268 (349)
.+.....+ ..-+++.+..+|++..+-+.++..+...|+.++|.+.+-..+..+... .+..+...+-.++...
T Consensus 214 ~qaa~~~~-~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~-------~d~~~Rk~lle~f~~~ 285 (304)
T COG3118 214 EQAAATPE-IQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGF-------EDGEARKTLLELFEAF 285 (304)
T ss_pred HHHhcCCC-HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccc-------cCcHHHHHHHHHHHhc
Confidence 33333332 233455667799999999999999999999999999998888876541 1345555555555555
Q ss_pred CC
Q psy9209 269 NN 270 (349)
Q Consensus 269 g~ 270 (349)
|.
T Consensus 286 g~ 287 (304)
T COG3118 286 GP 287 (304)
T ss_pred CC
Confidence 53
No 244
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=98.14 E-value=0.00055 Score=56.63 Aligned_cols=125 Identities=14% Similarity=0.056 Sum_probs=79.4
Q ss_pred HHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhCHHHHHHHHHHHHccccccHHHHHHHHHHHHh---cCcHHHHHHHHHH
Q psy9209 161 YYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKLAKLYDK---LNETEAAADLFME 237 (349)
Q Consensus 161 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~---~~~~~~A~~~~~~ 237 (349)
+.-+.+|++|++.+|++...+..+-.+..+..+.++....+++++..+|+++..|...-..... .-.++.....|.+
T Consensus 48 E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~ 127 (321)
T PF08424_consen 48 ERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYEK 127 (321)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHH
Confidence 4455666677777776666666666666666666666667777777777666666554443322 2245566666666
Q ss_pred HHhcccccCCC---------CCCcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHccc
Q psy9209 238 FVSKLDTFAAP---------PDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHE 285 (349)
Q Consensus 238 ~~~~~~~~~~~---------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 285 (349)
++......... ........++..+.....+.|..+.|+..++-.++++
T Consensus 128 ~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n 184 (321)
T PF08424_consen 128 CLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFN 184 (321)
T ss_pred HHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHH
Confidence 65543221000 0111245667778888899999999999999999875
No 245
>KOG0545|consensus
Probab=98.12 E-value=0.00017 Score=54.86 Aligned_cols=105 Identities=14% Similarity=0.004 Sum_probs=91.3
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHh--------Ccc----------cHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q psy9209 110 LGVWTLLGHEYMEMKNTNAAIQCYRQAIEI--------NNL----------DYRAWYGLGQTYEILRLPYYGLYYYKQAH 171 (349)
Q Consensus 110 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--------~~~----------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 171 (349)
..++...|+-++..|+|.+|...|..|+.. .|. ....+.+.++|+...|+|-++++.....+
T Consensus 178 v~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL 257 (329)
T KOG0545|consen 178 VPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEIL 257 (329)
T ss_pred hHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHH
Confidence 345677889999999999999999998753 232 34567889999999999999999999999
Q ss_pred hcCCCChHHHHHHHHHHHHhhCHHHHHHHHHHHHccccccHHH
Q psy9209 172 MVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKA 214 (349)
Q Consensus 172 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~ 214 (349)
...|.+..+++..|.+....=+..+|..-|.++++++|.-..+
T Consensus 258 ~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasv 300 (329)
T KOG0545|consen 258 RHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASV 300 (329)
T ss_pred hcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHH
Confidence 9999999999999999999999999999999999999975444
No 246
>KOG1550|consensus
Probab=98.09 E-value=0.0031 Score=56.41 Aligned_cols=276 Identities=17% Similarity=0.097 Sum_probs=181.6
Q ss_pred HHHHHHHHHHHHHhccccCCCCCcchhHHHHHHHHHHHHhc-----CCHHHHHHHHHHHhhh-----hhchHHHHHHHHH
Q psy9209 12 TEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKA-----NNLDTAYKCAQKCLQH-----EETAEEAKSLLRS 81 (349)
Q Consensus 12 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~A~~~~~~~l~~-----~~~~~~~~~~l~~ 81 (349)
...|...++.+...- .. .+...+|.++..- .|.+.|+.+++.+... .-..+.+ ...
T Consensus 228 ~~~a~~~~~~~a~~g-----~~------~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a---~~~ 293 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLG-----HS------EAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPA---QYG 293 (552)
T ss_pred hhHHHHHHHHHHhhc-----ch------HHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCcc---ccH
Confidence 456777777766211 11 4567788877654 6899999999998762 0011222 223
Q ss_pred HHHhcCC----Cc-chHHHHHHHHHHHhhCcccHHHHHHHHHHHHhcC---ChHHHHHHHHHHHHhCcccHHHHHHHHHH
Q psy9209 82 IAQKRQP----DE-SSSQAVLYFQRALKLNPNYLGVWTLLGHEYMEMK---NTNAAIQCYRQAIEINNLDYRAWYGLGQT 153 (349)
Q Consensus 82 ~~~~~~~----~~-~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~---~~~~A~~~~~~a~~~~~~~~~~~~~l~~~ 153 (349)
++.+|.+ .. +...|+.++.++-... ++.+.+.+|.++..-. ++..|.++|..|... .+..+.+.++.+
T Consensus 294 lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g--~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~--G~~~A~~~la~~ 369 (552)
T KOG1550|consen 294 LGRLYLQGLGVEKIDYEKALKLYTKAAELG--NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA--GHILAIYRLALC 369 (552)
T ss_pred HHHHHhcCCCCccccHHHHHHHHHHHHhcC--CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHc--CChHHHHHHHHH
Confidence 3344443 22 7888999999988765 4577888999887765 578999999999875 467888899988
Q ss_pred HHH----hCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHh-hCHHHHHHHHHHHHccccccHH----HHHHHHHHHHh
Q psy9209 154 YEI----LRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQ-EKISEAMKCYNKSRAIGDADGK----ALFKLAKLYDK 224 (349)
Q Consensus 154 ~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~a~~~~~~~~~----~~~~l~~~~~~ 224 (349)
|.. ..+...|..++.++.+.. .+.+...++.++... ++++.+...+....+..-..+. ...........
T Consensus 370 y~~G~gv~r~~~~A~~~~k~aA~~g--~~~A~~~~~~~~~~g~~~~~~~~~~~~~~a~~g~~~~q~~a~~l~~~~~~~~~ 447 (552)
T KOG1550|consen 370 YELGLGVERNLELAFAYYKKAAEKG--NPSAAYLLGAFYEYGVGRYDTALALYLYLAELGYEVAQSNAAYLLDQSEEDLF 447 (552)
T ss_pred HHhCCCcCCCHHHHHHHHHHHHHcc--ChhhHHHHHHHHHHccccccHHHHHHHHHHHhhhhHHhhHHHHHHHhcccccc
Confidence 875 357889999999999887 455555555554433 7777777666655554222111 11111111111
Q ss_pred c----CcHHHHHHHHHHHHhcccccCCCCCCcchHHHHHHHHHHHHHh----CCHHHHHHHHHHHHcccCChHHHHHHHH
Q psy9209 225 L----NETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKA----NNLDTAYKCAQKCLQHEETAEEAKSLLR 296 (349)
Q Consensus 225 ~----~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~A~~~~~~a~~~~~~~~~~~~~l~ 296 (349)
. .+...+...+.++.... ...+...+|.+|..- .+++.|...|.++.... ......+|
T Consensus 448 ~~~~~~~~~~~~~~~~~a~~~g-----------~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~---~~~~~nlg 513 (552)
T KOG1550|consen 448 SRGVISTLERAFSLYSRAAAQG-----------NADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG---AQALFNLG 513 (552)
T ss_pred ccccccchhHHHHHHHHHHhcc-----------CHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh---hHHHhhhh
Confidence 1 24455666666554432 577888888888775 36999999999988775 77888888
Q ss_pred HHHHHc-C--CCCCchhHHHHhhhcCCC
Q psy9209 297 SIAQKR-Q--PDESSSQPMECAVVLDPV 321 (349)
Q Consensus 297 ~~~~~~-~--~~~~A~~~~~~a~~~~p~ 321 (349)
.++..- | ....|..+|.++.+.+..
T Consensus 514 ~~~e~g~g~~~~~~a~~~~~~~~~~~~~ 541 (552)
T KOG1550|consen 514 YMHEHGEGIKVLHLAKRYYDQASEEDSR 541 (552)
T ss_pred hHHhcCcCcchhHHHHHHHHHHHhcCch
Confidence 887632 1 146788888888776554
No 247
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=98.08 E-value=1.2e-05 Score=41.73 Aligned_cols=32 Identities=28% Similarity=0.643 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHhCcc
Q psy9209 111 GVWTLLGHEYMEMKNTNAAIQCYRQAIEINNL 142 (349)
Q Consensus 111 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 142 (349)
.+++.+|.++...|++++|++.|+++++++|+
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence 34555555555555555555555555555554
No 248
>KOG1914|consensus
Probab=98.07 E-value=0.0054 Score=52.46 Aligned_cols=54 Identities=11% Similarity=0.055 Sum_probs=45.6
Q ss_pred HHHhCCHHHHHHHHHHHHcccCChHHHHHHHHHHHHHcCCCCCchhHHHHhhhc
Q psy9209 265 HLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDESSSQPMECAVVL 318 (349)
Q Consensus 265 ~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 318 (349)
|..+++..-|...|+-.++..++.+..-......+...++-..+...|++++..
T Consensus 411 y~cskD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s 464 (656)
T KOG1914|consen 411 YYCSKDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTS 464 (656)
T ss_pred HHhcCChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhc
Confidence 345688888999999998888888888888888888889989999999998876
No 249
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.07 E-value=0.00047 Score=54.22 Aligned_cols=152 Identities=13% Similarity=0.057 Sum_probs=107.9
Q ss_pred hcCCCcchHHHHHHHHHHHhhCcccHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCccc-HHHHHHHHHHHHHhCCHHHH
Q psy9209 85 KRQPDESSSQAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLD-YRAWYGLGQTYEILRLPYYG 163 (349)
Q Consensus 85 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~-~~~~~~l~~~~~~~~~~~~A 163 (349)
.....|++.+|...|..++...|++..+...++.++...|+.+.|...+...-...... ..........+.+.....+.
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~ 222 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEI 222 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCH
Confidence 34557999999999999999999999999999999999999999998887643322211 11111112233333333332
Q ss_pred HHHHHHHHhcCCCChHHHHHHHHHHHHhhCHHHHHHHHHHHHccccc--cHHHHHHHHHHHHhcCcHHHHHHHHHH
Q psy9209 164 LYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDA--DGKALFKLAKLYDKLNETEAAADLFME 237 (349)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~ 237 (349)
..+++.+..+|++..+.+.++..+...|+.++|.+.+-..+..+.. +..+...+-.++...|.-+.+...+++
T Consensus 223 -~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp~~~~~RR 297 (304)
T COG3118 223 -QDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADPLVLAYRR 297 (304)
T ss_pred -HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 2345566779999999999999999999999999999888877543 455666666666666654444444443
No 250
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=98.07 E-value=9.9e-06 Score=42.04 Aligned_cols=34 Identities=21% Similarity=0.261 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHcccCCh
Q psy9209 255 FFAFKYLANHHLKANNLDTAYKCAQKCLQHEETA 288 (349)
Q Consensus 255 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~ 288 (349)
+.+++.+|.++..+|++++|+.+|+++++++|++
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 3567888888888888888888888888888763
No 251
>KOG1550|consensus
Probab=98.07 E-value=0.0037 Score=55.95 Aligned_cols=250 Identities=17% Similarity=0.161 Sum_probs=161.4
Q ss_pred HHHHHHHHHHHhhhhhchHHHHHHHHHHH--HhcCCCcchHHHHHHHHHHHhh-----CcccHHHHHHHHHHHHhcC---
Q psy9209 55 LDTAYKCAQKCLQHEETAEEAKSLLRSIA--QKRQPDESSSQAVLYFQRALKL-----NPNYLGVWTLLGHEYMEMK--- 124 (349)
Q Consensus 55 ~~~A~~~~~~~l~~~~~~~~~~~~l~~~~--~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~la~~~~~~~--- 124 (349)
...|..+++.+....- ..+...++.+. ..+....|.+.|+.+++.+... ....+.+.+.+|.+|.+..
T Consensus 228 ~~~a~~~~~~~a~~g~--~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~ 305 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGH--SEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVE 305 (552)
T ss_pred hhHHHHHHHHHHhhcc--hHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCc
Confidence 4678888887765532 23322233221 1133457999999999998761 1114557788999998843
Q ss_pred --ChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhC---CHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH----hhCHH
Q psy9209 125 --NTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILR---LPYYGLYYYKQAHMVRPNDPRMLTALGEAFEK----QEKIS 195 (349)
Q Consensus 125 --~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~---~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~ 195 (349)
++..|+.+|.++.+.. ++.+.+.+|.++..-. ++..|.++|..+... .+..+.+.++.+|.. ..+..
T Consensus 306 ~~d~~~A~~~~~~aA~~g--~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~--G~~~A~~~la~~y~~G~gv~r~~~ 381 (552)
T KOG1550|consen 306 KIDYEKALKLYTKAAELG--NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA--GHILAIYRLALCYELGLGVERNLE 381 (552)
T ss_pred cccHHHHHHHHHHHHhcC--CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHc--CChHHHHHHHHHHHhCCCcCCCHH
Confidence 6788999999998764 5678888999888765 578999999999765 567888889988864 35789
Q ss_pred HHHHHHHHHHccccccHHHHHHHHHHHHhc-CcHHHHHHHHHHHHhcccccCCCCCCcchHHHHHHHHHHHHHh----CC
Q psy9209 196 EAMKCYNKSRAIGDADGKALFKLAKLYDKL-NETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKA----NN 270 (349)
Q Consensus 196 ~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~ 270 (349)
.|..++.++.+.. ++.+...++..+... +.+..+...+.......-.. .......+.......... .+
T Consensus 382 ~A~~~~k~aA~~g--~~~A~~~~~~~~~~g~~~~~~~~~~~~~~a~~g~~~-----~q~~a~~l~~~~~~~~~~~~~~~~ 454 (552)
T KOG1550|consen 382 LAFAYYKKAAEKG--NPSAAYLLGAFYEYGVGRYDTALALYLYLAELGYEV-----AQSNAAYLLDQSEEDLFSRGVIST 454 (552)
T ss_pred HHHHHHHHHHHcc--ChhhHHHHHHHHHHccccccHHHHHHHHHHHhhhhH-----HhhHHHHHHHhccccccccccccc
Confidence 9999999999887 455555555554433 77776666555544432210 000111111111111111 25
Q ss_pred HHHHHHHHHHHHcccCChHHHHHHHHHHHHHc----CCCCCchhHHHHhhhcC
Q psy9209 271 LDTAYKCAQKCLQHEETAEEAKSLLRSIAQKR----QPDESSSQPMECAVVLD 319 (349)
Q Consensus 271 ~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~----~~~~~A~~~~~~a~~~~ 319 (349)
...+...+.++... .+..+...++.++..- .+++.|...|.++....
T Consensus 455 ~~~~~~~~~~a~~~--g~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~ 505 (552)
T KOG1550|consen 455 LERAFSLYSRAAAQ--GNADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG 505 (552)
T ss_pred hhHHHHHHHHHHhc--cCHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh
Confidence 55666666665443 5677778888887754 24667888888876655
No 252
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.06 E-value=0.0019 Score=47.59 Aligned_cols=115 Identities=11% Similarity=0.056 Sum_probs=76.7
Q ss_pred HHHHHHHHhcCCCCh---HHHHHHHHHHHHhhCHHHHHHHHHHHHcccccc---HHHHHHHHHHHHhcCcHHHHHHHHHH
Q psy9209 164 LYYYKQAHMVRPNDP---RMLTALGEAFEKQEKISEAMKCYNKSRAIGDAD---GKALFKLAKLYDKLNETEAAADLFME 237 (349)
Q Consensus 164 ~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~ 237 (349)
....++....+|.+. -....++..+...|++++|+..++.++....+. +-+-.+++.+...+|++++|...+..
T Consensus 72 ~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t 151 (207)
T COG2976 72 IAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDT 151 (207)
T ss_pred HHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhc
Confidence 333444444444433 234456777788888888888888887654332 34556788888888888888887765
Q ss_pred HHhcccccCCCCCCcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHcccCCh
Q psy9209 238 FVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETA 288 (349)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~ 288 (349)
.....- .+..-...|+++...|+-++|+..|+++++..++.
T Consensus 152 ~~~~~w----------~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~ 192 (207)
T COG2976 152 IKEESW----------AAIVAELRGDILLAKGDKQEARAAYEKALESDASP 192 (207)
T ss_pred cccccH----------HHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCCh
Confidence 443221 24445567888888888888888888888876443
No 253
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=98.05 E-value=0.0092 Score=54.23 Aligned_cols=230 Identities=14% Similarity=0.008 Sum_probs=135.9
Q ss_pred HhcCCCcchHHHHHHHHHHHhhCcc---------cHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCccc-----HHHHHH
Q psy9209 84 QKRQPDESSSQAVLYFQRALKLNPN---------YLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLD-----YRAWYG 149 (349)
Q Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~~~---------~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~-----~~~~~~ 149 (349)
+......++.+|..+..++...-+. .....-..|.+....|++++|++..+.++..-|.+ ..+...
T Consensus 423 W~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv 502 (894)
T COG2909 423 WLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSV 502 (894)
T ss_pred HHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhh
Confidence 3344457788887777776554332 12344566788888999999999999998876654 456677
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCCC------hHHHHHHHHHHHHhhCH--HHHHHHHHHHHc----cccccHHHHHH
Q psy9209 150 LGQTYEILRLPYYGLYYYKQAHMVRPND------PRMLTALGEAFEKQEKI--SEAMKCYNKSRA----IGDADGKALFK 217 (349)
Q Consensus 150 l~~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~--~~A~~~~~~a~~----~~~~~~~~~~~ 217 (349)
+|.+..-.|++++|..+...+.+..... ..+....+.++..+|+. .+....+...-. ..|.+......
T Consensus 503 ~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~ 582 (894)
T COG2909 503 LGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRI 582 (894)
T ss_pred hhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHH
Confidence 8888888999999999888887763221 12334557777888832 333333322221 23333333333
Q ss_pred HHHHHHhcCcHHHHHHHHHHHHhcccccCCCCCCcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHcccCCh-----HH--
Q psy9209 218 LAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETA-----EE-- 290 (349)
Q Consensus 218 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~-----~~-- 290 (349)
.+.++...-+++.+.......++..... ........-..+.|+.+....|+.++|...+......-.+. ..
T Consensus 583 r~~ll~~~~r~~~~~~ear~~~~~~~~~--~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~ 660 (894)
T COG2909 583 RAQLLRAWLRLDLAEAEARLGIEVGSVY--TPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAA 660 (894)
T ss_pred HHHHHHHHHHHhhhhHHhhhcchhhhhc--ccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHH
Confidence 3333333333565555555555443220 00111122233589999999999999999998886542211 11
Q ss_pred HHHHHHHHHHHcCCCCCchhHHHHh
Q psy9209 291 AKSLLRSIAQKRQPDESSSQPMECA 315 (349)
Q Consensus 291 ~~~~l~~~~~~~~~~~~A~~~~~~a 315 (349)
+..........+|+...+.....+.
T Consensus 661 ~~~v~~~lwl~qg~~~~a~~~l~~s 685 (894)
T COG2909 661 AYKVKLILWLAQGDKELAAEWLLKS 685 (894)
T ss_pred HHHhhHHHhcccCCHHHHHHHHHhc
Confidence 1112223344577877777776663
No 254
>KOG1914|consensus
Probab=98.05 E-value=0.0038 Score=53.31 Aligned_cols=214 Identities=14% Similarity=0.072 Sum_probs=145.2
Q ss_pred HHHHHHhhCcccHHHHHHHHHHHHhcCC--------------hHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhC---C
Q psy9209 98 YFQRALKLNPNYLGVWTLLGHEYMEMKN--------------TNAAIQCYRQAIEIN-NLDYRAWYGLGQTYEILR---L 159 (349)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~la~~~~~~~~--------------~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~---~ 159 (349)
.+++++..-+-.+++|+..+..+...++ -+++..+|+++++.. ..+...++.++..-...- +
T Consensus 267 ayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~ 346 (656)
T KOG1914|consen 267 AYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNK 346 (656)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccch
Confidence 4556666666667777665555554444 567888888887742 223344444444333322 3
Q ss_pred HHHHHHHHHHHHhcCCCCh-HHHHHHHHHHHHhhCHHHHHHHHHHHHccccccHHHHHHHHHH-HHhcCcHHHHHHHHHH
Q psy9209 160 PYYGLYYYKQAHMVRPNDP-RMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKLAKL-YDKLNETEAAADLFME 237 (349)
Q Consensus 160 ~~~A~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~-~~~~~~~~~A~~~~~~ 237 (349)
++....++++++.+...++ -++..+-..-.+..-...|...|.++-+.......++..-|.+ |...++..-|.+.|+-
T Consensus 347 ~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cskD~~~AfrIFeL 426 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCSKDKETAFRIFEL 426 (656)
T ss_pred hhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhcCChhHHHHHHHH
Confidence 6677778888887654444 3556666666666668888889988877644333444433333 5677889999999999
Q ss_pred HHhcccccCCCCCCcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHcc--cC-ChHHHHHHHHHHHHHcCCCCCchhHHHH
Q psy9209 238 FVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQH--EE-TAEEAKSLLRSIAQKRQPDESSSQPMEC 314 (349)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~--~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 314 (349)
.+...++ .+..-......+...++-..|...|++++.. .+ ....+|..+-.....-|+....++.-++
T Consensus 427 GLkkf~d---------~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR 497 (656)
T KOG1914|consen 427 GLKKFGD---------SPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKR 497 (656)
T ss_pred HHHhcCC---------ChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 9998888 6777777788888899999999999999876 33 3456777777777778888777777666
Q ss_pred hhhcCC
Q psy9209 315 AVVLDP 320 (349)
Q Consensus 315 a~~~~p 320 (349)
-....|
T Consensus 498 ~~~af~ 503 (656)
T KOG1914|consen 498 RFTAFP 503 (656)
T ss_pred HHHhcc
Confidence 655555
No 255
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=98.00 E-value=0.00041 Score=50.27 Aligned_cols=63 Identities=17% Similarity=0.235 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHHHccccccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc
Q psy9209 179 RMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKLAKLYDKLNETEAAADLFMEFVSK 241 (349)
Q Consensus 179 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 241 (349)
.+...++..+...|++++|+..+++++..+|.+..++..+..++...|+..+|+..|+++...
T Consensus 63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~ 125 (146)
T PF03704_consen 63 DALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRR 125 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 455667788888899999999999999999988889999999999999999999888887654
No 256
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.99 E-value=0.00032 Score=50.88 Aligned_cols=61 Identities=15% Similarity=0.165 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q psy9209 111 GVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAH 171 (349)
Q Consensus 111 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 171 (349)
.+...++..+...|++++|+..+++++..+|.+..++..+..++...|+..+|+..|++..
T Consensus 63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~ 123 (146)
T PF03704_consen 63 DALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYR 123 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 4455666666777777777777777777777777777777777777777777777766654
No 257
>KOG4507|consensus
Probab=97.99 E-value=0.00061 Score=58.50 Aligned_cols=102 Identities=18% Similarity=0.219 Sum_probs=88.8
Q ss_pred HhhCHHHHHHHHHHHHccccccHH-HHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCCCCCcchHHHHHHHHHHHHHh
Q psy9209 190 KQEKISEAMKCYNKSRAIGDADGK-ALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKA 268 (349)
Q Consensus 190 ~~~~~~~A~~~~~~a~~~~~~~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 268 (349)
..|+...|+.++..++...|.... ...+++.+....|-.-.|-..+.+++.+... .+..++.+|..+...
T Consensus 619 ~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~s---------epl~~~~~g~~~l~l 689 (886)
T KOG4507|consen 619 AVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSS---------EPLTFLSLGNAYLAL 689 (886)
T ss_pred ecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhccc---------CchHHHhcchhHHHH
Confidence 568999999999999999886543 5678999999999999999999999998866 688899999999999
Q ss_pred CCHHHHHHHHHHHHcccCChHHHHHHHHHHHH
Q psy9209 269 NNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQ 300 (349)
Q Consensus 269 g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~ 300 (349)
.+.+.|++.|+.+++.+|+++.....|-.+..
T Consensus 690 ~~i~~a~~~~~~a~~~~~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 690 KNISGALEAFRQALKLTTKCPECENSLKLIRC 721 (886)
T ss_pred hhhHHHHHHHHHHHhcCCCChhhHHHHHHHHH
Confidence 99999999999999999998877766554443
No 258
>KOG0985|consensus
Probab=97.98 E-value=0.0032 Score=57.90 Aligned_cols=58 Identities=16% Similarity=0.019 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCCCCCcchHHHHHHHHHHHHHhCCHHHHHHHHHH
Q psy9209 213 KALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQK 280 (349)
Q Consensus 213 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 280 (349)
+-+-.+...|...|-+++-+..++.++.+... +...+..||.+|.+- ++++-.++++-
T Consensus 1280 deLeeli~~Yq~rGyFeElIsl~Ea~LGLERA---------HMgmfTELaiLYsky-kp~km~EHl~L 1337 (1666)
T KOG0985|consen 1280 DELEELIEYYQDRGYFEELISLLEAGLGLERA---------HMGMFTELAILYSKY-KPEKMMEHLKL 1337 (1666)
T ss_pred HhHHHHHHHHHhcCcHHHHHHHHHhhhchhHH---------HHHHHHHHHHHHHhc-CHHHHHHHHHH
Confidence 33445555666667777777777666666554 455566666655543 34444444443
No 259
>KOG0530|consensus
Probab=97.96 E-value=0.0046 Score=47.85 Aligned_cols=201 Identities=14% Similarity=0.105 Sum_probs=151.5
Q ss_pred cchHHHHHHHHHHHhhCcccHHHHHHHHHHHHhc-CChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHH-HHHHHH
Q psy9209 90 ESSSQAVLYFQRALKLNPNYLGVWTLLGHEYMEM-KNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPY-YGLYYY 167 (349)
Q Consensus 90 ~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~-~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~-~A~~~~ 167 (349)
..-..|+..-..++.++|.+..+|...-.++..+ .+..+-++++.+.++-+|++..+|...-.+....|++. .-++..
T Consensus 57 E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rELef~ 136 (318)
T KOG0530|consen 57 EKSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFRELEFT 136 (318)
T ss_pred ccCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccchHHHH
Confidence 4556677788888999999999997777776655 45778899999999999999999999999999999888 889999
Q ss_pred HHHHhcCCCChHHHHHHHHHHHHhhCHHHHHHHHHHHHccccccHHHHHHHHHHHHh-cC-----cHHHHHHHHHHHHhc
Q psy9209 168 KQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKLAKLYDK-LN-----ETEAAADLFMEFVSK 241 (349)
Q Consensus 168 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~-~~-----~~~~A~~~~~~~~~~ 241 (349)
+.++..+..+--+|...-.+....+.++.-+.+..+.++.+-.+-.+|...-.+... .| ..+.-+.+..+.+..
T Consensus 137 ~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~NNSAWN~Ryfvi~~~~~~~~~~~le~El~yt~~~I~~ 216 (318)
T KOG0530|consen 137 KLMLDDDAKNYHAWSHRQWVLRFFKDYEDELAYADELLEEDIRNNSAWNQRYFVITNTKGVISKAELERELNYTKDKILL 216 (318)
T ss_pred HHHHhccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccchhheeeEEEEeccCCccHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999998877666666543222111 11 234445677788888
Q ss_pred ccccCCCCCCcchHHHHHHHHHHHHH-hC--CHHHHHHHHHHHH-cccCChHHHHHHHHHHH
Q psy9209 242 LDTFAAPPDKTCGFFAFKYLANHHLK-AN--NLDTAYKCAQKCL-QHEETAEEAKSLLRSIA 299 (349)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~l~~~~~~-~g--~~~~A~~~~~~a~-~~~~~~~~~~~~l~~~~ 299 (349)
.|. +..+|..|.-++.. .| ...+-.......+ +.....+..+..+..++
T Consensus 217 vP~---------NeSaWnYL~G~l~~d~gl~s~s~vv~f~~~l~~~~~~~sP~lla~l~d~~ 269 (318)
T KOG0530|consen 217 VPN---------NESAWNYLKGLLELDSGLSSDSKVVSFVENLYLQLPKRSPFLLAFLLDLY 269 (318)
T ss_pred CCC---------CccHHHHHHHHHHhccCCcCCchHHHHHHHHhhccCCCChhHHHHHHHHH
Confidence 888 78899999888876 55 2334444444444 33344555555555555
No 260
>KOG0985|consensus
Probab=97.94 E-value=0.017 Score=53.51 Aligned_cols=59 Identities=17% Similarity=0.150 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhCHHHHHHHHHHHHcc
Q psy9209 144 YRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAI 207 (349)
Q Consensus 144 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 207 (349)
+.+|..+|......|...+|++.|-++ ++|..+.....+..+.|.|++-+.++..+.+.
T Consensus 1104 p~vWsqlakAQL~~~~v~dAieSyika-----dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk 1162 (1666)
T KOG0985|consen 1104 PAVWSQLAKAQLQGGLVKDAIESYIKA-----DDPSNYLEVIDVASRTGKYEDLVKYLLMARKK 1162 (1666)
T ss_pred hHHHHHHHHHHHhcCchHHHHHHHHhc-----CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 556666666666666666666666554 45555666666666666666666666555443
No 261
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=97.93 E-value=0.0023 Score=53.02 Aligned_cols=116 Identities=13% Similarity=0.103 Sum_probs=73.2
Q ss_pred HHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH---hhCHHHHHHHHHH
Q psy9209 127 NAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEK---QEKISEAMKCYNK 203 (349)
Q Consensus 127 ~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~A~~~~~~ 203 (349)
+.-+.+|++|++.+|++...+..+-....+..+.++..+-+++++..+|+++..|..+-..... .-.++.....|.+
T Consensus 48 E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~ 127 (321)
T PF08424_consen 48 ERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYEK 127 (321)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHH
Confidence 4455666777777776666666666666666666666666777777777766666544333322 1234455555555
Q ss_pred HHcc-------c-----------cccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc
Q psy9209 204 SRAI-------G-----------DADGKALFKLAKLYDKLNETEAAADLFMEFVSKL 242 (349)
Q Consensus 204 a~~~-------~-----------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 242 (349)
++.. . .....++..+.....+.|..+.|+..++-.++.+
T Consensus 128 ~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n 184 (321)
T PF08424_consen 128 CLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFN 184 (321)
T ss_pred HHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHH
Confidence 5443 0 0113455667777888899999999999988875
No 262
>KOG0551|consensus
Probab=97.92 E-value=0.00019 Score=57.09 Aligned_cols=101 Identities=16% Similarity=0.041 Sum_probs=84.2
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCh----HHHHHHHHHHHHhhCHHHHHHHHHHHHccccccHHHHHHHH
Q psy9209 144 YRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDP----RMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKLA 219 (349)
Q Consensus 144 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~ 219 (349)
+.-+-.-|.-|++.++|..|+..|.++++..-.++ ..|.+.+-+....|+|..|+.-..+++..+|.+..+++.=+
T Consensus 81 Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~A 160 (390)
T KOG0551|consen 81 AENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGA 160 (390)
T ss_pred HHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhh
Confidence 45566778888888899999999999988755544 56778888888899999999999999999999999999999
Q ss_pred HHHHhcCcHHHHHHHHHHHHhcccc
Q psy9209 220 KLYDKLNETEAAADLFMEFVSKLDT 244 (349)
Q Consensus 220 ~~~~~~~~~~~A~~~~~~~~~~~~~ 244 (349)
.++..+.++.+|..+.+..+.++..
T Consensus 161 kc~~eLe~~~~a~nw~ee~~~~d~e 185 (390)
T KOG0551|consen 161 KCLLELERFAEAVNWCEEGLQIDDE 185 (390)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhHH
Confidence 9999999999999988888776554
No 263
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=97.89 E-value=0.0087 Score=48.58 Aligned_cols=232 Identities=11% Similarity=0.029 Sum_probs=139.3
Q ss_pred HHhhCcHHHHHHHHHHHHHhccccCCCCC-cchhHHHHHHHHHHHHhcC-CHHHHHHHHHHHhhhhhc-------hH---
Q psy9209 6 YDKLNETEAAADLFMEFVSKLDTFAAPPD-KTCGFFAFKYLANHHLKAN-NLDTAYKCAQKCLQHEET-------AE--- 73 (349)
Q Consensus 6 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~l~~~~~-------~~--- 73 (349)
-.++|+.+.|...+.++-.... ..+|+ .......++..|......+ +++.|..+++++.+.-.. .+
T Consensus 3 A~~~~~~~~A~~~~~K~~~~~~--~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~ 80 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAKDLLN--SLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGS 80 (278)
T ss_pred chhhCCHHHHHHHHHHhhhHHh--cCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHH
Confidence 4578999999999998864332 22333 2334467899999999999 999999999999876211 11
Q ss_pred -HHHHHHHHHHHhcCCCcch---HHHHHHHHHHHhhCcccHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCcccHHHHHH
Q psy9209 74 -EAKSLLRSIAQKRQPDESS---SQAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYG 149 (349)
Q Consensus 74 -~~~~~l~~~~~~~~~~~~~---~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~ 149 (349)
.-...+..++.++...+.+ ++|....+.+-...|+.+..+...-.+....++.+.+.+.+.+++..-+-....+..
T Consensus 81 elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~ 160 (278)
T PF08631_consen 81 ELRLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDS 160 (278)
T ss_pred HHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcccccchHHH
Confidence 1233455566666655554 455666666666678878877666666666899999999999999864311111111
Q ss_pred HHHHH--HHhCCHHHHHHHHHHHHhc--CCCChHHHHHHH---HHHHHhh--C------HHHHHHHHHHHHcc--ccccH
Q psy9209 150 LGQTY--EILRLPYYGLYYYKQAHMV--RPNDPRMLTALG---EAFEKQE--K------ISEAMKCYNKSRAI--GDADG 212 (349)
Q Consensus 150 l~~~~--~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~---~~~~~~~--~------~~~A~~~~~~a~~~--~~~~~ 212 (349)
....+ ........|...+...+.. .|.... +.... .++...+ + .+....++....+. .|-.+
T Consensus 161 ~l~~i~~l~~~~~~~a~~~ld~~l~~r~~~~~~~-~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~ 239 (278)
T PF08631_consen 161 ILHHIKQLAEKSPELAAFCLDYLLLNRFKSSEDQ-WLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSA 239 (278)
T ss_pred HHHHHHHHHhhCcHHHHHHHHHHHHHHhCCChhH-HHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCH
Confidence 11111 1223445677777666653 222211 32222 2222221 1 22333333322211 22221
Q ss_pred -------HHHHHHHHHHHhcCcHHHHHHHHHHHHh
Q psy9209 213 -------KALFKLAKLYDKLNETEAAADLFMEFVS 240 (349)
Q Consensus 213 -------~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 240 (349)
..+.+.|...++.++|++|..+|+-++.
T Consensus 240 ~~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al~ 274 (278)
T PF08631_consen 240 EAASAIHTLLWNKGKKHYKAKNYDEAIEWYELALH 274 (278)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHH
Confidence 2345668889999999999999997763
No 264
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.87 E-value=0.0017 Score=47.86 Aligned_cols=116 Identities=13% Similarity=0.030 Sum_probs=83.2
Q ss_pred HHHHHHHHHHhhCcccH---HHHHHHHHHHHhcCChHHHHHHHHHHHHhCccc---HHHHHHHHHHHHHhCCHHHHHHHH
Q psy9209 94 QAVLYFQRALKLNPNYL---GVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLD---YRAWYGLGQTYEILRLPYYGLYYY 167 (349)
Q Consensus 94 ~A~~~~~~~~~~~~~~~---~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~ 167 (349)
+.....++....+|... .+-..++..+...|++++|+..++.++....+. .-+-.+|+.+....|++++|+..+
T Consensus 70 ~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L 149 (207)
T COG2976 70 KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTL 149 (207)
T ss_pred hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 34444445555554432 234677888999999999999999988643322 345678999999999999999888
Q ss_pred HHHHhcCCCChHHHHHHHHHHHHhhCHHHHHHHHHHHHccccc
Q psy9209 168 KQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDA 210 (349)
Q Consensus 168 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~ 210 (349)
....... -.+......|.++...|+-++|+..|+++++..++
T Consensus 150 ~t~~~~~-w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s 191 (207)
T COG2976 150 DTIKEES-WAAIVAELRGDILLAKGDKQEARAAYEKALESDAS 191 (207)
T ss_pred hcccccc-HHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCC
Confidence 7653211 01234556799999999999999999999988643
No 265
>KOG3616|consensus
Probab=97.87 E-value=0.013 Score=52.37 Aligned_cols=143 Identities=19% Similarity=0.248 Sum_probs=74.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHH------HHh----Cccc-HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHH
Q psy9209 113 WTLLGHEYMEMKNTNAAIQCYRQA------IEI----NNLD-YRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRML 181 (349)
Q Consensus 113 ~~~la~~~~~~~~~~~A~~~~~~a------~~~----~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 181 (349)
|-.-|.++.+..++++|+++|++. +++ .|.. ...-...|.-+...|+++.|+..|-++- ..
T Consensus 664 ydkagdlfeki~d~dkale~fkkgdaf~kaielarfafp~evv~lee~wg~hl~~~~q~daainhfiea~--------~~ 735 (1636)
T KOG3616|consen 664 YDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEAN--------CL 735 (1636)
T ss_pred HHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhh--------hH
Confidence 344566666777777777777653 332 2222 1222344666667777777777765542 11
Q ss_pred HHHHHHHHHhhCHHHHHHHHHHHHccccccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCCCCCcchHHHHHHH
Q psy9209 182 TALGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYL 261 (349)
Q Consensus 182 ~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 261 (349)
..-...-....+|.+|+..++..-.... ....|-.++.-|...|+++-|.+.|.++-. ...-
T Consensus 736 ~kaieaai~akew~kai~ildniqdqk~-~s~yy~~iadhyan~~dfe~ae~lf~e~~~-----------------~~da 797 (1636)
T KOG3616|consen 736 IKAIEAAIGAKEWKKAISILDNIQDQKT-ASGYYGEIADHYANKGDFEIAEELFTEADL-----------------FKDA 797 (1636)
T ss_pred HHHHHHHhhhhhhhhhHhHHHHhhhhcc-ccccchHHHHHhccchhHHHHHHHHHhcch-----------------hHHH
Confidence 2222333344556666655554332211 223344556666677777777666654422 1112
Q ss_pred HHHHHHhCCHHHHHHHHHHH
Q psy9209 262 ANHHLKANNLDTAYKCAQKC 281 (349)
Q Consensus 262 ~~~~~~~g~~~~A~~~~~~a 281 (349)
...|-+.|+|++|.+.-++.
T Consensus 798 i~my~k~~kw~da~kla~e~ 817 (1636)
T KOG3616|consen 798 IDMYGKAGKWEDAFKLAEEC 817 (1636)
T ss_pred HHHHhccccHHHHHHHHHHh
Confidence 34455566666665555444
No 266
>KOG1258|consensus
Probab=97.86 E-value=0.015 Score=50.54 Aligned_cols=189 Identities=8% Similarity=-0.047 Sum_probs=147.4
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc-CCCChHHHHHHHHHHH
Q psy9209 111 GVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMV-RPNDPRMLTALGEAFE 189 (349)
Q Consensus 111 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~ 189 (349)
..|......-...|+++.....|++++--.......|...+......|+.+-|-..+.++.++ .|..+.+....+.+-.
T Consensus 298 ~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e 377 (577)
T KOG1258|consen 298 KNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFEE 377 (577)
T ss_pred HHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHH
Confidence 445666666778899999999999999877778899999999999999999999888888876 5667778888888888
Q ss_pred HhhCHHHHHHHHHHHHccccccHHHHHHHHHHHHhcCcHHHHHHHHHHHHh-cccccCCCCCCcchHHHHHHHHHHHH-H
Q psy9209 190 KQEKISEAMKCYNKSRAIGDADGKALFKLAKLYDKLNETEAAADLFMEFVS-KLDTFAAPPDKTCGFFAFKYLANHHL-K 267 (349)
Q Consensus 190 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~-~ 267 (349)
..|++..|...+++..+..|+...+-..-+....+.|+.+.+.. +..... ..+. ..........+...++... -
T Consensus 378 ~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~~-~~~l~s~~~~~---~~~~~i~~~l~~~~~r~~~~i 453 (577)
T KOG1258|consen 378 SNGNFDDAKVILQRIESEYPGLVEVVLRKINWERRKGNLEDANY-KNELYSSIYEG---KENNGILEKLYVKFARLRYKI 453 (577)
T ss_pred hhccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcchhhhhH-HHHHHHHhccc---ccCcchhHHHHHHHHHHHHHH
Confidence 99999999999999998889888887777888888999888874 222222 2222 1222234555555665543 4
Q ss_pred hCCHHHHHHHHHHHHcccCChHHHHHHHHHHHHHcC
Q psy9209 268 ANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQ 303 (349)
Q Consensus 268 ~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~ 303 (349)
.++.+.|...+.++.+..|.+...+..+..+....+
T Consensus 454 ~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 454 REDADLARIILLEANDILPDCKVLYLELIRFELIQP 489 (577)
T ss_pred hcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCC
Confidence 579999999999999999998888877776666554
No 267
>KOG1308|consensus
Probab=97.83 E-value=1.8e-05 Score=62.99 Aligned_cols=92 Identities=13% Similarity=-0.071 Sum_probs=75.7
Q ss_pred HHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhCHHHHHHHHHHHHccccccHHHHHHHHHHHHhcCcHHHHH
Q psy9209 153 TYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKLAKLYDKLNETEAAA 232 (349)
Q Consensus 153 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 232 (349)
-....|.+++|++.|..++.++|.....+...+.++.+++++..|+.-+..+++++|+...-+-..+.....+|++++|.
T Consensus 123 eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa 202 (377)
T KOG1308|consen 123 EALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAA 202 (377)
T ss_pred HHhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHH
Confidence 34456778888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHhcccc
Q psy9209 233 DLFMEFVSKLDT 244 (349)
Q Consensus 233 ~~~~~~~~~~~~ 244 (349)
..+..+.+++-+
T Consensus 203 ~dl~~a~kld~d 214 (377)
T KOG1308|consen 203 HDLALACKLDYD 214 (377)
T ss_pred HHHHHHHhcccc
Confidence 888888876543
No 268
>KOG1308|consensus
Probab=97.82 E-value=2.4e-05 Score=62.28 Aligned_cols=93 Identities=16% Similarity=0.094 Sum_probs=73.2
Q ss_pred HHHHHhcCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhCHHH
Q psy9209 117 GHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISE 196 (349)
Q Consensus 117 a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 196 (349)
+.-.+..|.+++|++.|..+++++|.....+...+.++..++++..|+.-+..++.++|+...-+-..|.....+|++++
T Consensus 121 A~eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~ 200 (377)
T KOG1308|consen 121 ASEALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEE 200 (377)
T ss_pred HHHHhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHH
Confidence 33445667788888888888888888888888888888888888888888888888888887777777777888888888
Q ss_pred HHHHHHHHHcccc
Q psy9209 197 AMKCYNKSRAIGD 209 (349)
Q Consensus 197 A~~~~~~a~~~~~ 209 (349)
|...+..+.+++-
T Consensus 201 aa~dl~~a~kld~ 213 (377)
T KOG1308|consen 201 AAHDLALACKLDY 213 (377)
T ss_pred HHHHHHHHHhccc
Confidence 8888888877743
No 269
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=97.81 E-value=0.012 Score=47.72 Aligned_cols=230 Identities=13% Similarity=0.049 Sum_probs=135.4
Q ss_pred HHhcCCHHHHHHHHHHHhhhh----hchHH-HHHHHHHHHHhcCCCc-chHHHHHHHHHHHhh----Cc------c----
Q psy9209 49 HLKANNLDTAYKCAQKCLQHE----ETAEE-AKSLLRSIAQKRQPDE-SSSQAVLYFQRALKL----NP------N---- 108 (349)
Q Consensus 49 ~~~~~~~~~A~~~~~~~l~~~----~~~~~-~~~~l~~~~~~~~~~~-~~~~A~~~~~~~~~~----~~------~---- 108 (349)
....|+++.|..++.++-... |+... ....+..+|......+ +++.|..+++++.++ .+ +
T Consensus 3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el 82 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL 82 (278)
T ss_pred chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence 457899999999999987543 33322 2334566677777788 999999999999887 21 1
Q ss_pred cHHHHHHHHHHHHhcCChHH---HHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHH
Q psy9209 109 YLGVWTLLGHEYMEMKNTNA---AIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALG 185 (349)
Q Consensus 109 ~~~~~~~la~~~~~~~~~~~---A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~ 185 (349)
...++..++.+|...+.++. |....+.+-...|+.+.++...-.+..+.++.+++.+.+.+++...+-....+....
T Consensus 83 r~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~l 162 (278)
T PF08631_consen 83 RLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSIL 162 (278)
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcccccchHHHHH
Confidence 12356788899988887654 445555555556777777755555556689999999999999886542222222222
Q ss_pred HHH--HHhhCHHHHHHHHHHHHcc--ccccHHHHHHHH---HHHHhcC--cHHHH--HHHHHHHHhc---ccccCCCCCC
Q psy9209 186 EAF--EKQEKISEAMKCYNKSRAI--GDADGKALFKLA---KLYDKLN--ETEAA--ADLFMEFVSK---LDTFAAPPDK 251 (349)
Q Consensus 186 ~~~--~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~---~~~~~~~--~~~~A--~~~~~~~~~~---~~~~~~~~~~ 251 (349)
..+ ........|..++...+.. .|.... +.... .++...+ +.... ++.....+.. ... ....
T Consensus 163 ~~i~~l~~~~~~~a~~~ld~~l~~r~~~~~~~-~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~---~~ls 238 (278)
T PF08631_consen 163 HHIKQLAEKSPELAAFCLDYLLLNRFKSSEDQ-WLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLG---KQLS 238 (278)
T ss_pred HHHHHHHhhCcHHHHHHHHHHHHHHhCCChhH-HHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhc---CCCC
Confidence 222 1223445677777666654 332221 22221 2222222 11122 2333222221 111 0011
Q ss_pred c----chHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q psy9209 252 T----CGFFAFKYLANHHLKANNLDTAYKCAQKCL 282 (349)
Q Consensus 252 ~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 282 (349)
. .....+.+.|...++.++|++|..+|+-++
T Consensus 239 ~~~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 239 AEAASAIHTLLWNKGKKHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 1 122345566888899999999999998765
No 270
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=97.80 E-value=0.014 Score=48.01 Aligned_cols=187 Identities=21% Similarity=0.283 Sum_probs=130.1
Q ss_pred HHHHhcCCHHHHHHHHHHHhhhhhchHHHHHHHHHH-HHhcCCCcchHHHHHHHHHHHhhCcccHHHHHHHHHHHHh---
Q psy9209 47 NHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSI-AQKRQPDESSSQAVLYFQRALKLNPNYLGVWTLLGHEYME--- 122 (349)
Q Consensus 47 ~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~-~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~--- 122 (349)
......+++..+...+..+-.... ......++.+ ........+..+|..+|+.+. ....+.+.+.+|.+|..
T Consensus 49 ~~~~~~~~~~~a~~~~~~a~~~~~--~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a--~~g~~~a~~~lg~~~~~G~g 124 (292)
T COG0790 49 AGSAYPPDYAKALKSYEKAAELGD--AAALALLGQMYGAGKGVSRDKTKAADWYRCAA--ADGLAEALFNLGLMYANGRG 124 (292)
T ss_pred ccccccccHHHHHHHHHHhhhcCC--hHHHHHHHHHHHhccCccccHHHHHHHHHHHh--hcccHHHHHhHHHHHhcCCC
Confidence 334466788888888888775221 1222222222 122233467899999999544 45567888999999987
Q ss_pred -cCChHHHHHHHHHHHHhCccc-HHHHHHHHHHHHHhC-------CHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH---
Q psy9209 123 -MKNTNAAIQCYRQAIEINNLD-YRAWYGLGQTYEILR-------LPYYGLYYYKQAHMVRPNDPRMLTALGEAFEK--- 190 (349)
Q Consensus 123 -~~~~~~A~~~~~~a~~~~~~~-~~~~~~l~~~~~~~~-------~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~--- 190 (349)
..++.+|..+|+++.+..... ..+.+.++.+|..-. +...|...|.++-... ++.+...+|.+|..
T Consensus 125 v~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~--~~~a~~~lg~~y~~G~G 202 (292)
T COG0790 125 VPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG--NPDAQLLLGRMYEKGLG 202 (292)
T ss_pred cccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc--CHHHHHHHHHHHHcCCC
Confidence 558999999999999874333 344788888877642 2347889999887765 77888999988865
Q ss_pred -hhCHHHHHHHHHHHHccccccHHHHHHHHHHHHhcC---------------cHHHHHHHHHHHHhcc
Q psy9209 191 -QEKISEAMKCYNKSRAIGDADGKALFKLAKLYDKLN---------------ETEAAADLFMEFVSKL 242 (349)
Q Consensus 191 -~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~---------------~~~~A~~~~~~~~~~~ 242 (349)
..++.+|..+|.++-+... ....+.++ ++...| +...|...+..+....
T Consensus 203 v~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 267 (292)
T COG0790 203 VPRDLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELG 267 (292)
T ss_pred CCcCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcC
Confidence 3488999999999998876 78888888 666555 5555555555555443
No 271
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=97.80 E-value=0.0043 Score=52.03 Aligned_cols=142 Identities=16% Similarity=0.107 Sum_probs=107.4
Q ss_pred HhhCcccHHHHHHHHHHHHhcCChHHHHHHHHHHHHh--------------C------------ccc---HHHHHHHHHH
Q psy9209 103 LKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEI--------------N------------NLD---YRAWYGLGQT 153 (349)
Q Consensus 103 ~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--------------~------------~~~---~~~~~~l~~~ 153 (349)
+..+|-+.+++..++.++..+|+.+.|.+++++|+-. + +.| ..+.+.....
T Consensus 33 l~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~ 112 (360)
T PF04910_consen 33 LQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQS 112 (360)
T ss_pred HHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHH
Confidence 4568889999999999999999999999888888542 1 112 2345566778
Q ss_pred HHHhCCHHHHHHHHHHHHhcCCC-ChHH-HHHHHHHHHHhhCHHHHHHHHHHHHcccc-----ccHHHHHHHHHHHHhcC
Q psy9209 154 YEILRLPYYGLYYYKQAHMVRPN-DPRM-LTALGEAFEKQEKISEAMKCYNKSRAIGD-----ADGKALFKLAKLYDKLN 226 (349)
Q Consensus 154 ~~~~~~~~~A~~~~~~~~~~~~~-~~~~-~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-----~~~~~~~~l~~~~~~~~ 226 (349)
+.+.|-+..|+++.+-.+.++|. ||-. .+.+-....+.++++--+..++....... ..|..-+..+.++...+
T Consensus 113 L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~a~S~aLA~~~l~ 192 (360)
T PF04910_consen 113 LGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNFAFSIALAYFRLE 192 (360)
T ss_pred HHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccHHHHHHHHHHHhc
Confidence 88999999999999999999999 7744 44444555677888777777776555211 13456677788888888
Q ss_pred cH---------------HHHHHHHHHHHhcccc
Q psy9209 227 ET---------------EAAADLFMEFVSKLDT 244 (349)
Q Consensus 227 ~~---------------~~A~~~~~~~~~~~~~ 244 (349)
+. +.|...+.+++...|.
T Consensus 193 ~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~ 225 (360)
T PF04910_consen 193 KEESSQSSAQSGRSENSESADEALQKAILRFPW 225 (360)
T ss_pred CccccccccccccccchhHHHHHHHHHHHHhHH
Confidence 87 8999999999998775
No 272
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=97.76 E-value=6.9e-05 Score=38.75 Aligned_cols=32 Identities=16% Similarity=0.149 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHcccCC
Q psy9209 256 FAFKYLANHHLKANNLDTAYKCAQKCLQHEET 287 (349)
Q Consensus 256 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 287 (349)
.+|+.+|.++...|++++|..+|+++++++|+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 56788889999999999999999998888874
No 273
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=97.73 E-value=0.035 Score=50.69 Aligned_cols=301 Identities=13% Similarity=-0.022 Sum_probs=180.8
Q ss_pred hhhHH-hhCcHHHHHHHHHHHHHhccccCCCCCcchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhchH-HHHHHHH
Q psy9209 3 NKLYD-KLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAE-EAKSLLR 80 (349)
Q Consensus 3 a~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~-~~~~~l~ 80 (349)
|.++. ...+++.|...+++++..... ..-....+.+.+.++.++.+.+... |...+++.++...+.. ..|....
T Consensus 66 a~iL~~eT~n~~~Ae~~L~k~~~l~~~---~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~f 141 (608)
T PF10345_consen 66 ASILLEETENLDLAETYLEKAILLCER---HRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAF 141 (608)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhccc---cchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHH
Confidence 34444 678999999999999854433 1112223456777889988888777 9999999987654411 1122222
Q ss_pred HHH--HhcCCCcchHHHHHHHHHHHhhC--cccHHH----HHHHHHHHHhcCChHHHHHHHHHHHHhCc----------c
Q psy9209 81 SIA--QKRQPDESSSQAVLYFQRALKLN--PNYLGV----WTLLGHEYMEMKNTNAAIQCYRQAIEINN----------L 142 (349)
Q Consensus 81 ~~~--~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~----~~~la~~~~~~~~~~~A~~~~~~a~~~~~----------~ 142 (349)
.+. ......+++..|++.++...... +.++.+ ....+.+....+..+++++..+++..... .
T Consensus 142 rll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~ 221 (608)
T PF10345_consen 142 RLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIP 221 (608)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcH
Confidence 211 11212279999999999988765 344333 24456677788888889998888854321 1
Q ss_pred cHHHHHHHHH--HHHHhCCHHHHHHHHHHH---Hhc---CC-------C---------------C-h-------------
Q psy9209 143 DYRAWYGLGQ--TYEILRLPYYGLYYYKQA---HMV---RP-------N---------------D-P------------- 178 (349)
Q Consensus 143 ~~~~~~~l~~--~~~~~~~~~~A~~~~~~~---~~~---~~-------~---------------~-~------------- 178 (349)
...+|..+-. ++...|++..+...+++. ++. .+ + . +
T Consensus 222 qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w~~~~~d~~i~l~~~~~~~~~~~~~~~f~wl~~~~l~~ 301 (608)
T PF10345_consen 222 QLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKKSPSWPSWDEDGSIPLNIGEGSSNSGGTPLVFSWLPKEELYA 301 (608)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCccCCCcCCCeeEEeecccccccCCCceeEEeecCHHHHHH
Confidence 2344554444 344567766665554433 221 11 0 0 1
Q ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHHHccccc----------c----------------HHHHHHHHHHHHhcCcHHHHH
Q psy9209 179 RMLTALGEAFEKQEKISEAMKCYNKSRAIGDA----------D----------------GKALFKLAKLYDKLNETEAAA 232 (349)
Q Consensus 179 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~----------~----------------~~~~~~l~~~~~~~~~~~~A~ 232 (349)
-++..-|......+..++|.++++++++.-.+ . ....+.++.+..-.+++..|.
T Consensus 302 L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~~~~a~ 381 (608)
T PF10345_consen 302 LVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCYLLFYQIWCNFIRGDWSKAT 381 (608)
T ss_pred HHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHHHHCcCHHHHH
Confidence 12233355556667776888888877754110 0 123345667777889999999
Q ss_pred HHHHHHHhcccccCCCCCCcchHHHHHHHHHHHHHhCCHHHHHHHHH--------HHHcccCChH---HHHHHHHHHHHH
Q psy9209 233 DLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQ--------KCLQHEETAE---EAKSLLRSIAQK 301 (349)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~--------~a~~~~~~~~---~~~~~l~~~~~~ 301 (349)
.....+.......+........+..++..|..+...|+.+.|..+|. .+....+.+. -+..++..++..
T Consensus 382 ~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila~LNl~~I~~~ 461 (608)
T PF10345_consen 382 QELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRELYILAALNLAIILQY 461 (608)
T ss_pred HHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHHHHHHHHHhHh
Confidence 99888776543210011122357888999999999999999999998 3334444332 222345555555
Q ss_pred cCCCCC
Q psy9209 302 RQPDES 307 (349)
Q Consensus 302 ~~~~~~ 307 (349)
.+....
T Consensus 462 ~~~~~~ 467 (608)
T PF10345_consen 462 ESSRDD 467 (608)
T ss_pred hcccch
Confidence 554433
No 274
>KOG0551|consensus
Probab=97.72 E-value=0.00085 Score=53.53 Aligned_cols=99 Identities=15% Similarity=0.176 Sum_probs=72.0
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHhCcc----cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHH
Q psy9209 111 GVWTLLGHEYMEMKNTNAAIQCYRQAIEINNL----DYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGE 186 (349)
Q Consensus 111 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 186 (349)
..+-.-|+-|+..++|..|+..|.+.++..-. +...|.+.+-+....|+|..|+.-..+++.++|.+..+++.-+.
T Consensus 82 en~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Ak 161 (390)
T KOG0551|consen 82 ENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAK 161 (390)
T ss_pred HHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhH
Confidence 34455677777777788888888877775322 24556677777777788888888888888888888777777788
Q ss_pred HHHHhhCHHHHHHHHHHHHcccc
Q psy9209 187 AFEKQEKISEAMKCYNKSRAIGD 209 (349)
Q Consensus 187 ~~~~~~~~~~A~~~~~~a~~~~~ 209 (349)
|+..+.++.+|..+++..+.++.
T Consensus 162 c~~eLe~~~~a~nw~ee~~~~d~ 184 (390)
T KOG0551|consen 162 CLLELERFAEAVNWCEEGLQIDD 184 (390)
T ss_pred HHHHHHHHHHHHHHHhhhhhhhH
Confidence 88888887777777777766543
No 275
>KOG0890|consensus
Probab=97.70 E-value=0.038 Score=55.78 Aligned_cols=296 Identities=8% Similarity=-0.048 Sum_probs=169.0
Q ss_pred hhhHHhhCcHHHHHHHHHHHHHhccccCCCCCcchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhchHHHHHHHHHH
Q psy9209 3 NKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSI 82 (349)
Q Consensus 3 a~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~ 82 (349)
|++-.+.|.|..|+..+++-- ..+.........++.+-.+|...++++...-....- ..+|.-.. .
T Consensus 1390 a~aSfrc~~y~RalmylEs~~------~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r-~a~~sl~~-------q 1455 (2382)
T KOG0890|consen 1390 ARASFRCKAYARALMYLESHR------STEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARR-FADPSLYQ-------Q 1455 (2382)
T ss_pred HHHHHhhHHHHHHHHHHHHhc------cccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHh-hcCccHHH-------H
Confidence 344566778888888876631 011111111134455555888888887766655531 12222111 1
Q ss_pred HHhcCCCcchHHHHHHHHHHHhhCcccHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCcccHHHHHHHHH-HHHHhCCHH
Q psy9209 83 AQKRQPDESSSQAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQ-TYEILRLPY 161 (349)
Q Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~-~~~~~~~~~ 161 (349)
.......|++..|..+|+++++.+|+....+...-......|.++..+...+-.....++...-|+.++. +-++.++++
T Consensus 1456 il~~e~~g~~~da~~Cye~~~q~~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~se~~~~~~s~~~eaaW~l~qwD 1535 (2382)
T KOG0890|consen 1456 ILEHEASGNWADAAACYERLIQKDPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINRSEEVDELNSLGVEAAWRLSQWD 1535 (2382)
T ss_pred HHHHHhhccHHHHHHHHHHhhcCCCccccchhhHHHhhhcccchhHHHhhhcchhhccCHHHHHHHHHHHHHHhhhcchh
Confidence 1223335899999999999999999977777777777788888888888777666655555555555443 346666666
Q ss_pred HHHHHHH--------------HHHhcCCCChHHH-HHHHHHHH----------HhhCHHHHHHHHHHHH-----------
Q psy9209 162 YGLYYYK--------------QAHMVRPNDPRML-TALGEAFE----------KQEKISEAMKCYNKSR----------- 205 (349)
Q Consensus 162 ~A~~~~~--------------~~~~~~~~~~~~~-~~l~~~~~----------~~~~~~~A~~~~~~a~----------- 205 (349)
.-..+.. ..+.....+.... -.+...-. ..|.|..+.++.-+..
T Consensus 1536 ~~e~~l~~~n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~el~~~~~~ 1615 (2382)
T KOG0890|consen 1536 LLESYLSDRNIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLLELENSIEE 1615 (2382)
T ss_pred hhhhhhhcccccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5544432 0011111111000 00000000 0011112222211111
Q ss_pred -c-cccc-----cHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc---ccccCCCCCCcchHHHHHHHHHHHHHhCCHHHHH
Q psy9209 206 -A-IGDA-----DGKALFKLAKLYDKLNETEAAADLFMEFVSK---LDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAY 275 (349)
Q Consensus 206 -~-~~~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 275 (349)
. ..++ +.+-|.+....-....+..+-+-.+++++-. .|+ ......+.|...|++....|+++.|.
T Consensus 1616 l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~-----~~~~~ge~wLqsAriaR~aG~~q~A~ 1690 (2382)
T KOG0890|consen 1616 LKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSN-----LKSRLGECWLQSARIARLAGHLQRAQ 1690 (2382)
T ss_pred hhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhcccc-----ccchhHHHHHHHHHHHHhcccHHHHH
Confidence 0 0111 1222333322222222244444455554432 222 34457999999999999999999999
Q ss_pred HHHHHHHcccCChHHHHHHHHHHHHHcCCCCCchhHHHHhhhcC
Q psy9209 276 KCAQKCLQHEETAEEAKSLLRSIAQKRQPDESSSQPMECAVVLD 319 (349)
Q Consensus 276 ~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 319 (349)
.++-+|.+.. -+.+....|......|+...|+..+++.++..
T Consensus 1691 nall~A~e~r--~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~ 1732 (2382)
T KOG0890|consen 1691 NALLNAKESR--LPEIVLERAKLLWQTGDELNALSVLQEILSKN 1732 (2382)
T ss_pred HHHHhhhhcc--cchHHHHHHHHHHhhccHHHHHHHHHHHHHhh
Confidence 9999998876 56778889999999999999999999999654
No 276
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=97.69 E-value=0.0093 Score=49.98 Aligned_cols=212 Identities=12% Similarity=0.042 Sum_probs=132.1
Q ss_pred HHHHHHhhCcccHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc----
Q psy9209 98 YFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMV---- 173 (349)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---- 173 (349)
.+++++..-|-.+++|+.........++-+.|+...+++....|. ....++.+|....+.+....+|+++.+.
T Consensus 290 ~~~q~~~y~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~sps---L~~~lse~yel~nd~e~v~~~fdk~~q~L~r~ 366 (660)
T COG5107 290 IHNQILDYFYYAEEVWFDYSEYLIGISDKQKALKTVERGIEMSPS---LTMFLSEYYELVNDEEAVYGCFDKCTQDLKRK 366 (660)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccCCCc---hheeHHHHHhhcccHHHHhhhHHHHHHHHHHH
Confidence 456666666777778888777788888888888888888776665 5566777777777766666666655432
Q ss_pred --------------CCC-Ch-----------HHHHHHHHHHHHhhCHHHHHHHHHHHHccccccHHHHHHHHHH-HHhcC
Q psy9209 174 --------------RPN-DP-----------RMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKLAKL-YDKLN 226 (349)
Q Consensus 174 --------------~~~-~~-----------~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~-~~~~~ 226 (349)
+|. .+ -+++.+-..-.+..-.+.|...|-++-+..-....++..-|.+ +...|
T Consensus 367 ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~~ 446 (660)
T COG5107 367 YSMGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYATG 446 (660)
T ss_pred HhhhhhhhhccccCCccccHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhcC
Confidence 111 01 1222233333344446677777777766542333344333333 55678
Q ss_pred cHHHHHHHHHHHHhcccccCCCCCCcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHcccCCh--HHHHHHHHHHHHHcCC
Q psy9209 227 ETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETA--EEAKSLLRSIAQKRQP 304 (349)
Q Consensus 227 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~--~~~~~~l~~~~~~~~~ 304 (349)
++.-|...|+-.+...|+ .+..-...-..+...++-+.|...|++++..-... ...+..+-.....-|+
T Consensus 447 d~~ta~~ifelGl~~f~d---------~~~y~~kyl~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~ 517 (660)
T COG5107 447 DRATAYNIFELGLLKFPD---------STLYKEKYLLFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGS 517 (660)
T ss_pred CcchHHHHHHHHHHhCCC---------chHHHHHHHHHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcc
Confidence 888888999888888887 44444555566677788888888888776543222 3444445555555666
Q ss_pred CCCchhHHHHhhhcCCC
Q psy9209 305 DESSSQPMECAVVLDPV 321 (349)
Q Consensus 305 ~~~A~~~~~~a~~~~p~ 321 (349)
...+...=++..++.|+
T Consensus 518 lN~v~sLe~rf~e~~pQ 534 (660)
T COG5107 518 LNNVYSLEERFRELVPQ 534 (660)
T ss_pred hHHHHhHHHHHHHHcCc
Confidence 66665555555555554
No 277
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=97.69 E-value=0.041 Score=50.29 Aligned_cols=237 Identities=14% Similarity=-0.008 Sum_probs=148.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhhhhc--hH---H---HHHHHHHHHHhcCCCcchHHHHHHHHHHHhhCccc---
Q psy9209 41 AFKYLANHHLKANNLDTAYKCAQKCLQHEET--AE---E---AKSLLRSIAQKRQPDESSSQAVLYFQRALKLNPNY--- 109 (349)
Q Consensus 41 ~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~--~~---~---~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~--- 109 (349)
.....++......++.+|...+.++...-|. .. . .+..+. +.+....|++++|++..+.++..-|.+
T Consensus 417 Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~--a~val~~~~~e~a~~lar~al~~L~~~~~~ 494 (894)
T COG2909 417 LVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALR--AQVALNRGDPEEAEDLARLALVQLPEAAYR 494 (894)
T ss_pred HHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHH--HHHHHhcCCHHHHHHHHHHHHHhcccccch
Confidence 4556677788889999999998887754332 11 0 122222 233334699999999999999887664
Q ss_pred --HHHHHHHHHHHHhcCChHHHHHHHHHHHHhCcc----c--HHHHHHHHHHHHHhCCH--HHHHHHHHHHH----hcCC
Q psy9209 110 --LGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNL----D--YRAWYGLGQTYEILRLP--YYGLYYYKQAH----MVRP 175 (349)
Q Consensus 110 --~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~----~--~~~~~~l~~~~~~~~~~--~~A~~~~~~~~----~~~~ 175 (349)
..+...+|.+..-.|++++|..+...+.+.... . ..+....+.++..+|+. .+....+...- ...|
T Consensus 495 ~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~ 574 (894)
T COG2909 495 SRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKP 574 (894)
T ss_pred hhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcc
Confidence 345688899999999999999999998886332 2 23334557778888843 33333333222 2233
Q ss_pred CChHHHHHHHHHHHHhhCHHHHHHHHHHHHcc----cccc--HH-HHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCC
Q psy9209 176 NDPRMLTALGEAFEKQEKISEAMKCYNKSRAI----GDAD--GK-ALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAP 248 (349)
Q Consensus 176 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~----~~~~--~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 248 (349)
.........+.++...-+++.+.......++. .|.. .. +.+.++.+....|+.++|...+.++.....+. .
T Consensus 575 ~~~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~--~ 652 (894)
T COG2909 575 RHEFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNG--Q 652 (894)
T ss_pred cchhHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCC--C
Confidence 33334444444444444466666666665554 2222 22 23588999999999999999999888765541 0
Q ss_pred CCCcchHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q psy9209 249 PDKTCGFFAFKYLANHHLKANNLDTAYKCAQKC 281 (349)
Q Consensus 249 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 281 (349)
........++.-.......+|+...|.....+.
T Consensus 653 ~~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~~s 685 (894)
T COG2909 653 YHVDYLAAAYKVKLILWLAQGDKELAAEWLLKS 685 (894)
T ss_pred CCchHHHHHHHhhHHHhcccCCHHHHHHHHHhc
Confidence 011112222333334445678999888887774
No 278
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=97.68 E-value=0.00011 Score=37.92 Aligned_cols=32 Identities=16% Similarity=0.149 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhc
Q psy9209 40 FAFKYLANHHLKANNLDTAYKCAQKCLQHEET 71 (349)
Q Consensus 40 ~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~ 71 (349)
.+|+.+|.++...|++++|+..|+++++++|+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 46899999999999999999999999999885
No 279
>KOG1464|consensus
Probab=97.67 E-value=0.016 Score=45.27 Aligned_cols=217 Identities=17% Similarity=0.118 Sum_probs=133.9
Q ss_pred hcCCHHHHHHHHHHHhhhhhchHH-HHHHHHHHHHhcCCCcchHHHHHHHHHHHhhC-----cccHH-HHHHHHHHHHhc
Q psy9209 51 KANNLDTAYKCAQKCLQHEETAEE-AKSLLRSIAQKRQPDESSSQAVLYFQRALKLN-----PNYLG-VWTLLGHEYMEM 123 (349)
Q Consensus 51 ~~~~~~~A~~~~~~~l~~~~~~~~-~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~-----~~~~~-~~~~la~~~~~~ 123 (349)
...+.++|+..|++++++.+...+ .+..+-.+....++.|++++-+..|.+.+..- .+..+ ....+-..-...
T Consensus 39 ~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS 118 (440)
T KOG1464|consen 39 KEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTS 118 (440)
T ss_pred cccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhh
Confidence 345789999999999998876543 34456666677888899999999998877531 11111 112222222233
Q ss_pred CChHHHHHHHHHHHHh--CcccHHHH----HHHHHHHHHhCCHHHHHHHHHHHHhcCCC------------ChHHHHHHH
Q psy9209 124 KNTNAAIQCYRQAIEI--NNLDYRAW----YGLGQTYEILRLPYYGLYYYKQAHMVRPN------------DPRMLTALG 185 (349)
Q Consensus 124 ~~~~~A~~~~~~a~~~--~~~~~~~~----~~l~~~~~~~~~~~~A~~~~~~~~~~~~~------------~~~~~~~l~ 185 (349)
.+.+--.+.|+..+.. +..+...| ..+|.+|+..++|.+-.+++++.-..... -.+++..-.
T Consensus 119 ~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEI 198 (440)
T KOG1464|consen 119 KNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEI 198 (440)
T ss_pred hhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHh
Confidence 4444444555554442 23334444 36899999999988877777766543211 124555556
Q ss_pred HHHHHhhCHHHHHHHHHHHHccccc--cHHHHHH----HHHHHHhcCcHHHHHHHHHHHHhcccccCCCCCCcchHHHHH
Q psy9209 186 EAFEKQEKISEAMKCYNKSRAIGDA--DGKALFK----LAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFK 259 (349)
Q Consensus 186 ~~~~~~~~~~~A~~~~~~a~~~~~~--~~~~~~~----l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (349)
.+|..+++-.+-...|++++.+... +|.+.-. =|..+.+.|++++|-..|-++++.....| ........-|.
T Consensus 199 QmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsG--spRRttCLKYL 276 (440)
T KOG1464|consen 199 QMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESG--SPRRTTCLKYL 276 (440)
T ss_pred hhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHHHhcccccC--CcchhHHHHHH
Confidence 7788888888888899999887432 3333322 25567888999999998888887655431 11122233344
Q ss_pred HHHHHHHHhC
Q psy9209 260 YLANHHLKAN 269 (349)
Q Consensus 260 ~l~~~~~~~g 269 (349)
-|+..+.+.|
T Consensus 277 VLANMLmkS~ 286 (440)
T KOG1464|consen 277 VLANMLMKSG 286 (440)
T ss_pred HHHHHHHHcC
Confidence 4555565554
No 280
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=97.63 E-value=0.05 Score=49.71 Aligned_cols=295 Identities=12% Similarity=0.012 Sum_probs=179.7
Q ss_pred HHHHHHHHHHHHhccccCCCCCcchhHHHHHHHHHHHH-hcCCHHHHHHHHHHHhhhh--hchHHH-HHHHHHHHHhcCC
Q psy9209 13 EAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHL-KANNLDTAYKCAQKCLQHE--ETAEEA-KSLLRSIAQKRQP 88 (349)
Q Consensus 13 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~~l~~~--~~~~~~-~~~l~~~~~~~~~ 88 (349)
..|+.+++-+++ ...+.+..-+.+.+.+|.+++ ...+++.|..++++++.+. ++..+. +..-..++..+.+
T Consensus 38 ~~ai~CL~~~~~-----~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~ 112 (608)
T PF10345_consen 38 ATAIKCLEAVLK-----QFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFK 112 (608)
T ss_pred HHHHHHHHHHhc-----cCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHh
Confidence 456777766663 122223333478999999998 7789999999999998665 333322 2222333555555
Q ss_pred CcchHHHHHHHHHHHhhCcc---cHHHH-HHH--HHHHHhcCChHHHHHHHHHHHHhC--cccHHH----HHHHHHHHHH
Q psy9209 89 DESSSQAVLYFQRALKLNPN---YLGVW-TLL--GHEYMEMKNTNAAIQCYRQAIEIN--NLDYRA----WYGLGQTYEI 156 (349)
Q Consensus 89 ~~~~~~A~~~~~~~~~~~~~---~~~~~-~~l--a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~----~~~l~~~~~~ 156 (349)
.+... |...+++.++.... ....| +.+ .......+++..|++.++...... +.++.+ ....+.+...
T Consensus 113 ~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~ 191 (608)
T PF10345_consen 113 TNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLR 191 (608)
T ss_pred cCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhc
Confidence 55555 99999998876544 22222 222 333333489999999999998864 233332 2234556667
Q ss_pred hCCHHHHHHHHHHHHhcC------CC----ChHHHHHHHH--HHHHhhCHHHHHHHHHHHHc---c---cc---c---c-
Q psy9209 157 LRLPYYGLYYYKQAHMVR------PN----DPRMLTALGE--AFEKQEKISEAMKCYNKSRA---I---GD---A---D- 211 (349)
Q Consensus 157 ~~~~~~A~~~~~~~~~~~------~~----~~~~~~~l~~--~~~~~~~~~~A~~~~~~a~~---~---~~---~---~- 211 (349)
.+..+++++..+++.... |. ...++..+-. +....|+++.+...+++.-. . .+ . +
T Consensus 192 ~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w~~~~~d~ 271 (608)
T PF10345_consen 192 RGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKKSPSWPSWDEDG 271 (608)
T ss_pred CCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCccCCCcCCCe
Confidence 777888888888774421 11 1234443333 34456776666655444321 1 11 0 0
Q ss_pred -----------------------------HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccccC-----CCCCCc-----
Q psy9209 212 -----------------------------GKALFKLAKLYDKLNETEAAADLFMEFVSKLDTFA-----APPDKT----- 252 (349)
Q Consensus 212 -----------------------------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-----~~~~~~----- 252 (349)
.-++..-|......+..+.|.+++.++++.-.... ....+.
T Consensus 272 ~i~l~~~~~~~~~~~~~~~f~wl~~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~ 351 (608)
T PF10345_consen 272 SIPLNIGEGSSNSGGTPLVFSWLPKEELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASE 351 (608)
T ss_pred eEEeecccccccCCCceeEEeecCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHH
Confidence 11223335556667777788888888877543311 000000
Q ss_pred -------chHHHHHHHHHHHHHhCCHHHHHHHHHHHHccc---C------ChHHHHHHHHHHHHHcCCCCCchhHHH
Q psy9209 253 -------CGFFAFKYLANHHLKANNLDTAYKCAQKCLQHE---E------TAEEAKSLLRSIAQKRQPDESSSQPME 313 (349)
Q Consensus 253 -------~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~---~------~~~~~~~~l~~~~~~~~~~~~A~~~~~ 313 (349)
-.....+..+.+..-.|++..|....+.+.... | -.+..++..|..+...|+.+.|...|.
T Consensus 352 ~~~~~~~l~~~~~~y~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~ 428 (608)
T PF10345_consen 352 RIQWLRYLQCYLLFYQIWCNFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQ 428 (608)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHh
Confidence 012344556777778899999999988876542 2 246778889999999999999999998
No 281
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=97.62 E-value=0.0068 Score=50.88 Aligned_cols=146 Identities=10% Similarity=-0.029 Sum_probs=106.1
Q ss_pred HHhCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--------------C------------CCCh---HHHHHHHHH
Q psy9209 137 IEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMV--------------R------------PNDP---RMLTALGEA 187 (349)
Q Consensus 137 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------------~------------~~~~---~~~~~l~~~ 187 (349)
+..+|-+.+++..++.++..+|+...|.+.+++++-. + +.|. .+.+.....
T Consensus 33 l~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~ 112 (360)
T PF04910_consen 33 LQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQS 112 (360)
T ss_pred HHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHH
Confidence 5668999999999999999999999999998888643 1 1121 345667788
Q ss_pred HHHhhCHHHHHHHHHHHHccccc-cHHH-HHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCCCCCcchHHHHHHHHHHH
Q psy9209 188 FEKQEKISEAMKCYNKSRAIGDA-DGKA-LFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHH 265 (349)
Q Consensus 188 ~~~~~~~~~A~~~~~~a~~~~~~-~~~~-~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 265 (349)
+.+.|-+..|.++.+-.+.++|. ++.. .+.+-....+.++++--+..++......... -....+..-+..+.++
T Consensus 113 L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~----~~~~lPn~a~S~aLA~ 188 (360)
T PF04910_consen 113 LGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRN----WLSLLPNFAFSIALAY 188 (360)
T ss_pred HHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhh----hhhhCccHHHHHHHHH
Confidence 88999999999999999999998 6654 3444445567788877777777655421110 0001345667778888
Q ss_pred HHhCCH---------------HHHHHHHHHHHcccC
Q psy9209 266 LKANNL---------------DTAYKCAQKCLQHEE 286 (349)
Q Consensus 266 ~~~g~~---------------~~A~~~~~~a~~~~~ 286 (349)
...++. ++|...+.+|+...|
T Consensus 189 ~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP 224 (360)
T PF04910_consen 189 FRLEKEESSQSSAQSGRSENSESADEALQKAILRFP 224 (360)
T ss_pred HHhcCccccccccccccccchhHHHHHHHHHHHHhH
Confidence 888887 889888888876544
No 282
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=97.48 E-value=0.041 Score=45.17 Aligned_cols=181 Identities=20% Similarity=0.199 Sum_probs=134.5
Q ss_pred CCcchHHHHHHHHHHHhhCcccHHHHHHHHHHHHhc----CChHHHHHHHHHHHHhCcccHHHHHHHHHHHHH----hCC
Q psy9209 88 PDESSSQAVLYFQRALKLNPNYLGVWTLLGHEYMEM----KNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEI----LRL 159 (349)
Q Consensus 88 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~----~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~----~~~ 159 (349)
..+++..+...+.++-.. .++.....++.+|..- .+..+|...|..+.+ ..++.+.+.+|.+|.. ..+
T Consensus 53 ~~~~~~~a~~~~~~a~~~--~~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~--~g~~~a~~~lg~~~~~G~gv~~d 128 (292)
T COG0790 53 YPPDYAKALKSYEKAAEL--GDAAALALLGQMYGAGKGVSRDKTKAADWYRCAAA--DGLAEALFNLGLMYANGRGVPLD 128 (292)
T ss_pred ccccHHHHHHHHHHhhhc--CChHHHHHHHHHHHhccCccccHHHHHHHHHHHhh--cccHHHHHhHHHHHhcCCCcccC
Confidence 457888999998887763 2336777888887653 467889999996554 5567888999999987 458
Q ss_pred HHHHHHHHHHHHhcCCCC-hHHHHHHHHHHHHhh-------CHHHHHHHHHHHHccccccHHHHHHHHHHHHh----cCc
Q psy9209 160 PYYGLYYYKQAHMVRPND-PRMLTALGEAFEKQE-------KISEAMKCYNKSRAIGDADGKALFKLAKLYDK----LNE 227 (349)
Q Consensus 160 ~~~A~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~-------~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~----~~~ 227 (349)
..+|..+|.++.+..-.. ......+|.+|..-. +...|...|.++-... ++.+...+|.+|.. ..+
T Consensus 129 ~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~--~~~a~~~lg~~y~~G~Gv~~d 206 (292)
T COG0790 129 LVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG--NPDAQLLLGRMYEKGLGVPRD 206 (292)
T ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc--CHHHHHHHHHHHHcCCCCCcC
Confidence 999999999999875443 344778888876642 2347888888887766 67888889988755 347
Q ss_pred HHHHHHHHHHHHhcccccCCCCCCcchHHHHHHHHHHHHHhC---------------CHHHHHHHHHHHHcccC
Q psy9209 228 TEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKAN---------------NLDTAYKCAQKCLQHEE 286 (349)
Q Consensus 228 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---------------~~~~A~~~~~~a~~~~~ 286 (349)
+.+|..+|.++.+.. +....+.++ ++...| +...|...+.++....+
T Consensus 207 ~~~A~~wy~~Aa~~g-----------~~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 268 (292)
T COG0790 207 LKKAFRWYKKAAEQG-----------DGAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELGF 268 (292)
T ss_pred HHHHHHHHHHHHHCC-----------CHHHHHHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcCC
Confidence 899999999998764 257777888 666666 66677777777665544
No 283
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=97.45 E-value=0.00025 Score=37.11 Aligned_cols=30 Identities=13% Similarity=0.168 Sum_probs=24.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhhhh
Q psy9209 41 AFKYLANHHLKANNLDTAYKCAQKCLQHEE 70 (349)
Q Consensus 41 ~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~ 70 (349)
+|..+|.+|...|++++|+.+|++++.+..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~ 30 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALALAR 30 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence 467899999999999999999999775543
No 284
>KOG1464|consensus
Probab=97.45 E-value=0.024 Score=44.32 Aligned_cols=193 Identities=11% Similarity=0.093 Sum_probs=118.9
Q ss_pred CcchHHHHHHHHHHHhhCcccH----HHHHHHHHHHHhcCChHHHHHHHHHHHHhCcc-----c-HHHHHHHHHHHHHhC
Q psy9209 89 DESSSQAVLYFQRALKLNPNYL----GVWTLLGHEYMEMKNTNAAIQCYRQAIEINNL-----D-YRAWYGLGQTYEILR 158 (349)
Q Consensus 89 ~~~~~~A~~~~~~~~~~~~~~~----~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-----~-~~~~~~l~~~~~~~~ 158 (349)
..++++|+..|++++++.+... .++-.+..+++.+|++++-.+.|.+.+..-.. . ......+-..-....
T Consensus 40 e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~ 119 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSK 119 (440)
T ss_pred ccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhh
Confidence 3589999999999999988754 35667788999999999999999988764111 1 111111111111222
Q ss_pred CHHHHHHHHHHHHhc--CCCChHHH----HHHHHHHHHhhCHHHHHHHHHHHHccc---cc---------cHHHHHHHHH
Q psy9209 159 LPYYGLYYYKQAHMV--RPNDPRML----TALGEAFEKQEKISEAMKCYNKSRAIG---DA---------DGKALFKLAK 220 (349)
Q Consensus 159 ~~~~A~~~~~~~~~~--~~~~~~~~----~~l~~~~~~~~~~~~A~~~~~~a~~~~---~~---------~~~~~~~l~~ 220 (349)
+.+--...|+..+.. +..+...| ..+|.+|+..+.|.+-...+++.-... .. -.+++..-..
T Consensus 120 ~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQ 199 (440)
T KOG1464|consen 120 NMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQ 199 (440)
T ss_pred hhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhh
Confidence 333333333333321 12233333 468999999998888777766654431 11 1344555566
Q ss_pred HHHhcCcHHHHHHHHHHHHhcccccCCCCCCcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHcc
Q psy9209 221 LYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQH 284 (349)
Q Consensus 221 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 284 (349)
.|..+++-..-...|++++.+... +....-.....-.=|..+.+.|+|++|..-|=.+.+.
T Consensus 200 mYT~qKnNKkLK~lYeqalhiKSA---IPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAFKN 260 (440)
T KOG1464|consen 200 MYTEQKNNKKLKALYEQALHIKSA---IPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKN 260 (440)
T ss_pred hhhhhcccHHHHHHHHHHHHhhcc---CCchHHHhHHHHcCCccccccchHHHHHhHHHHHHhc
Confidence 788888888888899999887554 1111112222233366788889999998777777653
No 285
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=97.45 E-value=0.00026 Score=37.08 Aligned_cols=27 Identities=30% Similarity=0.474 Sum_probs=17.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHh
Q psy9209 113 WTLLGHEYMEMKNTNAAIQCYRQAIEI 139 (349)
Q Consensus 113 ~~~la~~~~~~~~~~~A~~~~~~a~~~ 139 (349)
+..+|.+|...|++++|+++|++++.+
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 556677777777777777777775543
No 286
>KOG2041|consensus
Probab=97.43 E-value=0.039 Score=49.05 Aligned_cols=119 Identities=16% Similarity=0.055 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhchHHH------H---HHHHHHHHhcCCCcchHHHHHHHHHHHhhCcccH
Q psy9209 40 FAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEA------K---SLLRSIAQKRQPDESSSQAVLYFQRALKLNPNYL 110 (349)
Q Consensus 40 ~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~------~---~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 110 (349)
..|..++......-.++.|...|-+.-.. |.-... + ...+.+...| |++++|.+.|-.+-..+
T Consensus 693 rLWrllAe~Al~Kl~l~tAE~AFVrc~dY-~Gik~vkrl~~i~s~~~q~aei~~~~---g~feeaek~yld~drrD---- 764 (1189)
T KOG2041|consen 693 RLWRLLAEYALFKLALDTAEHAFVRCGDY-AGIKLVKRLRTIHSKEQQRAEISAFY---GEFEEAEKLYLDADRRD---- 764 (1189)
T ss_pred HHHHHHHHHHHHHHhhhhHhhhhhhhccc-cchhHHHHhhhhhhHHHHhHhHhhhh---cchhHhhhhhhccchhh----
Confidence 68999999999888888888877665321 111000 0 0012222223 88888888775432111
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q psy9209 111 GVWTLLGHEYMEMKNTNAAIQCYRQAIEIN--NLDYRAWYGLGQTYEILRLPYYGLYYYKQA 170 (349)
Q Consensus 111 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 170 (349)
.-..++...|+|-...++++..-.-+ .....++.++|..+..+..|++|.++|...
T Consensus 765 ----LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~ 822 (1189)
T KOG2041|consen 765 ----LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYC 822 (1189)
T ss_pred ----hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 11223445555554444443321111 112345666666666666666666666554
No 287
>KOG0890|consensus
Probab=97.40 E-value=0.2 Score=51.05 Aligned_cols=107 Identities=11% Similarity=-0.018 Sum_probs=79.2
Q ss_pred ccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCCCCCcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHccc-CC-
Q psy9209 210 ADGKALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHE-ET- 287 (349)
Q Consensus 210 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-~~- 287 (349)
...+.|...|++....|+++.|...+-++.+.. .+.++...|..+...|+-..|+..+++.++.+ |+
T Consensus 1668 ~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r-----------~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~ 1736 (2382)
T KOG0890|consen 1668 RLGECWLQSARIARLAGHLQRAQNALLNAKESR-----------LPEIVLERAKLLWQTGDELNALSVLQEILSKNFPDL 1736 (2382)
T ss_pred hhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc-----------cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhcccc
Confidence 357889999999999999999999888887654 36888899999999999999999999998653 22
Q ss_pred ---------h------HHHHHHHHHHHHHcCCCC--CchhHHHHhhhcCCCCCCccc
Q psy9209 288 ---------A------EEAKSLLRSIAQKRQPDE--SSSQPMECAVVLDPVPPSTRS 327 (349)
Q Consensus 288 ---------~------~~~~~~l~~~~~~~~~~~--~A~~~~~~a~~~~p~~~~~~~ 327 (349)
. ..+...++......|+.+ .-+.+|..+.++.|....-+.
T Consensus 1737 ~~~~~~~p~~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~ewe~~hy 1793 (2382)
T KOG0890|consen 1737 HTPYTDTPQSVNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAILPEWEDKHY 1793 (2382)
T ss_pred cCCccccchhhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcccccCcee
Confidence 1 123344445555556543 557788889999986555433
No 288
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=97.37 E-value=0.00046 Score=35.23 Aligned_cols=25 Identities=16% Similarity=0.103 Sum_probs=9.4
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHhc
Q psy9209 149 GLGQTYEILRLPYYGLYYYKQAHMV 173 (349)
Q Consensus 149 ~l~~~~~~~~~~~~A~~~~~~~~~~ 173 (349)
.+|.++...|++++|+..|++++..
T Consensus 5 ~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 5 RLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHH
Confidence 3333333333333333333333333
No 289
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=97.37 E-value=0.0017 Score=37.12 Aligned_cols=45 Identities=27% Similarity=0.297 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHcccCChHHHHHHHHHHHH
Q psy9209 256 FAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQ 300 (349)
Q Consensus 256 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~ 300 (349)
+.++.+|..+.+.|+|++|..+.+.++++.|++..+......+..
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i~~ 46 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKELIED 46 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Confidence 467889999999999999999999999999999998877766543
No 290
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=97.32 E-value=0.0089 Score=43.00 Aligned_cols=83 Identities=13% Similarity=-0.022 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhCHHHHHHHHHHHHccccccHHHHHHHHHHHHhc
Q psy9209 146 AWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKLAKLYDKL 225 (349)
Q Consensus 146 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~ 225 (349)
.+..+..+-...++.+++...+..+--+.|..+..-..-|.++...|+|.+|+..++.+....|..+...-.++.|+..+
T Consensus 12 gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~ 91 (160)
T PF09613_consen 12 GLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYAL 91 (160)
T ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHc
Confidence 34444455555666667766666666667777777777777777777777777777776666666666666666666666
Q ss_pred CcH
Q psy9209 226 NET 228 (349)
Q Consensus 226 ~~~ 228 (349)
|+.
T Consensus 92 ~D~ 94 (160)
T PF09613_consen 92 GDP 94 (160)
T ss_pred CCh
Confidence 653
No 291
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=97.30 E-value=0.00047 Score=35.19 Aligned_cols=32 Identities=22% Similarity=0.149 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHcccCC
Q psy9209 256 FAFKYLANHHLKANNLDTAYKCAQKCLQHEET 287 (349)
Q Consensus 256 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 287 (349)
++++.+|.++...|++++|+..|+++++..|+
T Consensus 1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 1 DALYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred CHHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 35678888888888888888888888887775
No 292
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=97.29 E-value=0.0089 Score=39.86 Aligned_cols=46 Identities=15% Similarity=0.278 Sum_probs=29.4
Q ss_pred HHHHHHHHHHccccccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc
Q psy9209 196 EAMKCYNKSRAIGDADGKALFKLAKLYDKLNETEAAADLFMEFVSK 241 (349)
Q Consensus 196 ~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 241 (349)
.+++++.++..+.|..+..++.+|.-+.....|+++....++++.+
T Consensus 62 ~sve~~s~a~~Lsp~~A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 62 GSVECFSRAVELSPDSAHSLFELASQLGSVKYYKKAVKKAKRGLSV 107 (111)
T ss_pred HhHHHHHHHhccChhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence 3566777777777777666666666555555566666666665543
No 293
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=97.28 E-value=0.0087 Score=39.91 Aligned_cols=46 Identities=13% Similarity=0.186 Sum_probs=31.2
Q ss_pred HHHHHHHHHHhcCCCChHHHHHHHHHHHHhhCHHHHHHHHHHHHcc
Q psy9209 162 YGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAI 207 (349)
Q Consensus 162 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 207 (349)
.+++++.++..+.|..+..++.+|.-+-...-|+++..-.++++..
T Consensus 62 ~sve~~s~a~~Lsp~~A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 62 GSVECFSRAVELSPDSAHSLFELASQLGSVKYYKKAVKKAKRGLSV 107 (111)
T ss_pred HhHHHHHHHhccChhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence 3566777777777777777777776666666667777666666654
No 294
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=97.22 E-value=0.011 Score=42.56 Aligned_cols=85 Identities=13% Similarity=0.006 Sum_probs=68.9
Q ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCCCCCcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHcccCChHHHH
Q psy9209 213 KALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAK 292 (349)
Q Consensus 213 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 292 (349)
..+..+..+-...++.+++...+...--+.|. .+..-..-|.++...|++.+|+..++.+....|..+.+.
T Consensus 11 ~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~---------~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~k 81 (160)
T PF09613_consen 11 GGLIEVLSVALRLGDPDDAEALLDALRVLRPE---------FPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAK 81 (160)
T ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHHhCCC---------chHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHH
Confidence 34555666667778888888888888788887 788888888888889999999999988888888888888
Q ss_pred HHHHHHHHHcCCCC
Q psy9209 293 SLLRSIAQKRQPDE 306 (349)
Q Consensus 293 ~~l~~~~~~~~~~~ 306 (349)
..++.|+..+|+.+
T Consensus 82 ALlA~CL~~~~D~~ 95 (160)
T PF09613_consen 82 ALLALCLYALGDPS 95 (160)
T ss_pred HHHHHHHHHcCChH
Confidence 88888888887763
No 295
>KOG3783|consensus
Probab=97.19 E-value=0.12 Score=44.63 Aligned_cols=72 Identities=19% Similarity=0.080 Sum_probs=58.2
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCCCCCcchHHHHHHHHHHHHHhCC-HHHHHHHHHHHHcccCC
Q psy9209 214 ALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANN-LDTAYKCAQKCLQHEET 287 (349)
Q Consensus 214 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~a~~~~~~ 287 (349)
.++.+|.++..+|+...|..+|..+++.... ...+..-.+.+++.+|.++..+|. ..++..++.+|-....+
T Consensus 451 k~lL~g~~lR~Lg~~~~a~~~f~i~~~~e~~--~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~~d 523 (546)
T KOG3783|consen 451 KYLLKGVILRNLGDSEVAPKCFKIQVEKESK--RTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREYASD 523 (546)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh--hccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhccc
Confidence 4567899999999999999999988854222 123344578999999999999998 99999999999887643
No 296
>KOG3824|consensus
Probab=97.16 E-value=0.0024 Score=50.52 Aligned_cols=75 Identities=12% Similarity=0.095 Sum_probs=57.9
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Q psy9209 114 TLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAF 188 (349)
Q Consensus 114 ~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 188 (349)
...+.-....|+.++|..+|+.++.+.|.++.++..+|......++.-+|-.+|-+++.+.|.+.+++.+.+...
T Consensus 120 l~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~RT~ 194 (472)
T KOG3824|consen 120 LKAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRARTT 194 (472)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhccc
Confidence 444555567788888888888888888888888888888888778888888888888888888888777665543
No 297
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=97.14 E-value=0.014 Score=45.03 Aligned_cols=72 Identities=17% Similarity=0.216 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHhcCcHHHHHHH-------HHHHHhcccccCCCCCCcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHcc
Q psy9209 212 GKALFKLAKLYDKLNETEAAADL-------FMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQH 284 (349)
Q Consensus 212 ~~~~~~l~~~~~~~~~~~~A~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 284 (349)
+..+..+|.+|..+|+.+....+ |.+++..... .........+.+.+|.+..+.|++++|..+|.+++..
T Consensus 118 A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~---~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~ 194 (214)
T PF09986_consen 118 AGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDF---PIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGS 194 (214)
T ss_pred HHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcC---CCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcC
Confidence 55667778888888775544444 4444443322 1223345778889999999999999999999999876
Q ss_pred cC
Q psy9209 285 EE 286 (349)
Q Consensus 285 ~~ 286 (349)
..
T Consensus 195 ~~ 196 (214)
T PF09986_consen 195 KK 196 (214)
T ss_pred CC
Confidence 43
No 298
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=97.14 E-value=0.011 Score=38.48 Aligned_cols=44 Identities=18% Similarity=0.106 Sum_probs=21.5
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHHHhhCHHHHHHHHHHHHcccc
Q psy9209 166 YYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGD 209 (349)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~ 209 (349)
.+++.+..+|++..+.+.+|..+...|++++|++.+-.++..++
T Consensus 10 al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr 53 (90)
T PF14561_consen 10 ALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDR 53 (90)
T ss_dssp HHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-T
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc
Confidence 34444455555555555555555555555555555555555544
No 299
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=97.13 E-value=0.012 Score=43.99 Aligned_cols=103 Identities=14% Similarity=0.106 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHHHccccc---cHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCCCCCcchH
Q psy9209 179 RMLTALGEAFEKQEKISEAMKCYNKSRAIGDA---DGKALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGF 255 (349)
Q Consensus 179 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 255 (349)
.++..+|..|.+.|+.++|++.|.++...... ..+.++.+..+....+++.....+..++-..... ..+.....
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~---~~d~~~~n 113 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEK---GGDWERRN 113 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhc---cchHHHHH
Confidence 45666777777777777777777776655322 2445566667777777777777777766554333 11122223
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHcc
Q psy9209 256 FAFKYLANHHLKANNLDTAYKCAQKCLQH 284 (349)
Q Consensus 256 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 284 (349)
.....-|..+...++|.+|...|-.+...
T Consensus 114 rlk~~~gL~~l~~r~f~~AA~~fl~~~~t 142 (177)
T PF10602_consen 114 RLKVYEGLANLAQRDFKEAAELFLDSLST 142 (177)
T ss_pred HHHHHHHHHHHHhchHHHHHHHHHccCcC
Confidence 34444566667778888888877776543
No 300
>KOG3824|consensus
Probab=97.11 E-value=0.0027 Score=50.30 Aligned_cols=72 Identities=24% Similarity=0.270 Sum_probs=62.7
Q ss_pred HHhcCCCcchHHHHHHHHHHHhhCcccHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCcccHHHHHHHHHHH
Q psy9209 83 AQKRQPDESSSQAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTY 154 (349)
Q Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~ 154 (349)
+.-..+.|+.++|...|+-++.++|.+++++..+|......++.-+|-.+|-+++.++|.+.+++.+.+...
T Consensus 123 A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~RT~ 194 (472)
T KOG3824|consen 123 AGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRARTT 194 (472)
T ss_pred HHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhccc
Confidence 334456799999999999999999999999999999998889999999999999999999998888776543
No 301
>PRK10941 hypothetical protein; Provisional
Probab=97.11 E-value=0.0091 Score=47.65 Aligned_cols=73 Identities=18% Similarity=0.091 Sum_probs=52.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHH
Q psy9209 113 WTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALG 185 (349)
Q Consensus 113 ~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~ 185 (349)
..++-.+|.+.++++.|+.+.+.++.+.|+++.-+...|.+|.++|.+..|..-++..++..|+++.+-....
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ 256 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRA 256 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHH
Confidence 3555667777777777777777777777777777777777777777777777777777777777776554433
No 302
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=97.11 E-value=0.01 Score=38.56 Aligned_cols=64 Identities=17% Similarity=0.159 Sum_probs=32.7
Q ss_pred HHHHHHHHhhCcccHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCccc--HHHHHHHHHHHHHhCC
Q psy9209 96 VLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLD--YRAWYGLGQTYEILRL 159 (349)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~--~~~~~~l~~~~~~~~~ 159 (349)
+..+++.++.+|++..+.+.+|..+...|++++|++.+-.++..++.. ..+...+-.++...|.
T Consensus 8 ~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~ 73 (90)
T PF14561_consen 8 IAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGP 73 (90)
T ss_dssp HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-T
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCC
Confidence 344555555666666666666666666666666666666666554432 3333344444444443
No 303
>KOG2396|consensus
Probab=97.11 E-value=0.014 Score=49.67 Aligned_cols=96 Identities=9% Similarity=0.094 Sum_probs=81.1
Q ss_pred hHHHHHHHHHHHhhCcccHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCC-HHHHHHHHHHH
Q psy9209 92 SSQAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRL-PYYGLYYYKQA 170 (349)
Q Consensus 92 ~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~~ 170 (349)
...-...|+.++...+.++..|........+.+.+.+-...|.+++..+|++++.|..-|.-.+..+. .+.|...+.++
T Consensus 87 ~~rIv~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrg 166 (568)
T KOG2396|consen 87 PNRIVFLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRG 166 (568)
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHH
Confidence 35567788899988888899998888888888889999999999999999999999988887776665 88999999999
Q ss_pred HhcCCCChHHHHHHHHH
Q psy9209 171 HMVRPNDPRMLTALGEA 187 (349)
Q Consensus 171 ~~~~~~~~~~~~~l~~~ 187 (349)
++.+|+++..|...-.+
T Consensus 167 LR~npdsp~Lw~eyfrm 183 (568)
T KOG2396|consen 167 LRFNPDSPKLWKEYFRM 183 (568)
T ss_pred hhcCCCChHHHHHHHHH
Confidence 99999999887655443
No 304
>KOG2396|consensus
Probab=97.09 E-value=0.018 Score=48.96 Aligned_cols=93 Identities=11% Similarity=0.108 Sum_probs=75.3
Q ss_pred HHHHHHHHHhhhhhchHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhCcccHHHHHHHHHHHHhcCC-hHHHHHHHHH
Q psy9209 57 TAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDESSSQAVLYFQRALKLNPNYLGVWTLLGHEYMEMKN-TNAAIQCYRQ 135 (349)
Q Consensus 57 ~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~-~~~A~~~~~~ 135 (349)
.-...|+.+....+.+...|..+...+.. .+.+.+--..|.+++..+|++++.|..-|.-.+..+. .+.|...|.+
T Consensus 89 rIv~lyr~at~rf~~D~~lW~~yi~f~kk---~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflr 165 (568)
T KOG2396|consen 89 RIVFLYRRATNRFNGDVKLWLSYIAFCKK---KKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLR 165 (568)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHH---hcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHH
Confidence 34557788887788788887766655444 3568899999999999999999999988887777666 9999999999
Q ss_pred HHHhCcccHHHHHHHHH
Q psy9209 136 AIEINNLDYRAWYGLGQ 152 (349)
Q Consensus 136 a~~~~~~~~~~~~~l~~ 152 (349)
++..+|+++..|...-.
T Consensus 166 gLR~npdsp~Lw~eyfr 182 (568)
T KOG2396|consen 166 GLRFNPDSPKLWKEYFR 182 (568)
T ss_pred HhhcCCCChHHHHHHHH
Confidence 99999999988865444
No 305
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=97.04 E-value=0.016 Score=44.67 Aligned_cols=64 Identities=17% Similarity=0.158 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHhCCHHH-------HHHHHHHHHhcCCC------ChHHHHHHHHHHHHhhCHHHHHHHHHHHHcc
Q psy9209 144 YRAWYGLGQTYEILRLPYY-------GLYYYKQAHMVRPN------DPRMLTALGEAFEKQEKISEAMKCYNKSRAI 207 (349)
Q Consensus 144 ~~~~~~l~~~~~~~~~~~~-------A~~~~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 207 (349)
+..+..+|++|...|+.+. |+..|.++++.... ...+.+.+|.+..+.|++++|..+|.+++..
T Consensus 118 A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~ 194 (214)
T PF09986_consen 118 AGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGS 194 (214)
T ss_pred HHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcC
Confidence 3445555555555555332 33334444332211 1245566677777777777777777776655
No 306
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=97.02 E-value=0.0043 Score=35.49 Aligned_cols=40 Identities=28% Similarity=0.348 Sum_probs=32.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhhhhchHHHHHHHH
Q psy9209 41 AFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLR 80 (349)
Q Consensus 41 ~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~ 80 (349)
.++.++..+++.|+|++|..+.+.+++..|++..+..+..
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~ 42 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKE 42 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHH
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHH
Confidence 4678889999999999999999999999999988765443
No 307
>PRK10941 hypothetical protein; Provisional
Probab=97.01 E-value=0.012 Score=47.06 Aligned_cols=72 Identities=11% Similarity=-0.035 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhCHHHHHHHHHHHHccccccHHHHHH
Q psy9209 146 AWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKALFK 217 (349)
Q Consensus 146 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~ 217 (349)
...++-.+|...++++.|+.+.+.++.+.|+++.-+...|.+|.++|.+..|..-++..++..|+.+.+-.-
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~i 254 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMI 254 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHH
Confidence 445666677777777777777777777777777777777777777777777777777777777776665443
No 308
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=96.96 E-value=0.00088 Score=50.55 Aligned_cols=74 Identities=12% Similarity=0.038 Sum_probs=64.9
Q ss_pred HHHHHhCCHHHHHHHHHHHHcccCChHHHHHHHHHHHHHcCCCCCchhHHHHhhhcCCCCCCccccCCCCCCCC
Q psy9209 263 NHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDESSSQPMECAVVLDPVPPSTRSSKFPANPAY 336 (349)
Q Consensus 263 ~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~ 336 (349)
....+.++.+.|.+.|.+++.+.|.....|..+|....+.|+++.|...|++.++++|++.....-.+..++.-
T Consensus 3 ~~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~~gaa~kLa~lg~~ 76 (287)
T COG4976 3 YMLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDHGGAALKLAVLGRG 76 (287)
T ss_pred chhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccccchhhhHHhhcCC
Confidence 34567789999999999999999999999999999999999999999999999999999987766555555553
No 309
>KOG1463|consensus
Probab=96.95 E-value=0.15 Score=41.36 Aligned_cols=276 Identities=13% Similarity=0.068 Sum_probs=168.1
Q ss_pred hhhHHhhCcHHHHHHHHHHHHHhccccCCCCCc-chhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhch--HHHHHHH
Q psy9209 3 NKLYDKLNETEAAADLFMEFVSKLDTFAAPPDK-TCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETA--EEAKSLL 79 (349)
Q Consensus 3 a~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~--~~~~~~l 79 (349)
++.....++.++++.++..++........++.. ...-.+...+|..+...|+.++-....+..-...... +.+....
T Consensus 11 ~~~~~~~~~~~~~~~il~~vl~~~~~~~s~e~~i~~kE~~Ilel~~ll~~~~~~~~lr~li~~~Rpf~~~v~KakaaKlv 90 (411)
T KOG1463|consen 11 AQNLVSVNQVEEAINILKSVLNKAQGASSDEARIKEKEQSILELGDLLAKEGDAEELRDLITSLRPFLSSVSKAKAAKLV 90 (411)
T ss_pred HHHhcccchhhhhHHHHHHHhhhhccccCCHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 444556677899999999988542222222111 1122468899999999999887766665543322111 1111112
Q ss_pred HH-HHHhcCCCcchHHHHHHHHHHHhhCcccHH------HHHHHHHHHHhcCChHHHHHHHHHHHHh----Cc--ccHHH
Q psy9209 80 RS-IAQKRQPDESSSQAVLYFQRALKLNPNYLG------VWTLLGHEYMEMKNTNAAIQCYRQAIEI----NN--LDYRA 146 (349)
Q Consensus 80 ~~-~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~------~~~~la~~~~~~~~~~~A~~~~~~a~~~----~~--~~~~~ 146 (349)
.. +-......+..+.-+..+..+++.....-. .-..+..+|...++|.+|+......+.- +. ...++
T Consensus 91 R~Lvd~~~~~~~~~~~~i~l~~~cIeWA~~ekRtFLRq~Learli~Ly~d~~~YteAlaL~~~L~rElKKlDDK~lLvev 170 (411)
T KOG1463|consen 91 RSLVDMFLKIDDGTGDQIELCTECIEWAKREKRTFLRQSLEARLIRLYNDTKRYTEALALINDLLRELKKLDDKILLVEV 170 (411)
T ss_pred HHHHHHHccCCCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccceeee
Confidence 22 222222334455666666666655433222 2256788999999999999888777652 22 23566
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhcC-----CCCh--HHHHHHHHHHHHhhCHHHHHHHHHHHHccccc---cHH---
Q psy9209 147 WYGLGQTYEILRLPYYGLYYYKQAHMVR-----PNDP--RMLTALGEAFEKQEKISEAMKCYNKSRAIGDA---DGK--- 213 (349)
Q Consensus 147 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~-----~~~~--~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~---~~~--- 213 (349)
+..-..+|....+..+|...+..+-... |... ..-..-|..+....+|..|..+|-++++-... ...
T Consensus 171 ~llESK~y~~l~Nl~KakasLTsART~AnaiYcpPqlQa~lDLqSGIlha~ekDykTafSYFyEAfEgf~s~~~~v~A~~ 250 (411)
T KOG1463|consen 171 HLLESKAYHALRNLPKAKASLTSARTTANAIYCPPQLQATLDLQSGILHAAEKDYKTAFSYFYEAFEGFDSLDDDVKALT 250 (411)
T ss_pred hhhhhHHHHHHhcchhHHHHHHHHHHhhcccccCHHHHHHHHHhccceeecccccchHHHHHHHHHccccccCCcHHHHH
Confidence 7777888899999999888887765431 1111 22233466666778999999999999886321 122
Q ss_pred HHHHHHHHHHhcCcHHHHHHHH--HHHHhcccccCCCCCCcchHHHHHHHHHHHHHh--CCHHHHHHHHHHHHcccCC
Q psy9209 214 ALFKLAKLYDKLNETEAAADLF--MEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKA--NNLDTAYKCAQKCLQHEET 287 (349)
Q Consensus 214 ~~~~l~~~~~~~~~~~~A~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--g~~~~A~~~~~~a~~~~~~ 287 (349)
.+-.+-.+-...+..++--..+ +.+++.... ...+....+..+... .+|+.|+.-|..-+..+|-
T Consensus 251 sLKYMlLcKIMln~~ddv~~lls~K~~l~y~g~---------~i~AmkavAeA~~nRSLkdF~~AL~~yk~eL~~D~i 319 (411)
T KOG1463|consen 251 SLKYMLLCKIMLNLPDDVAALLSAKLALKYAGR---------DIDAMKAVAEAFGNRSLKDFEKALADYKKELAEDPI 319 (411)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHhhHHHHhccCc---------chHHHHHHHHHhcCCcHHHHHHHHHHhHHHHhcChH
Confidence 2333334444556666554444 344443333 678888888887664 5888999888888777663
No 310
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=96.93 E-value=0.092 Score=45.81 Aligned_cols=136 Identities=18% Similarity=0.026 Sum_probs=104.4
Q ss_pred HHHHHHHHHHHhhhhhchHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhCcccHHHHHHHHHHHHhcCChHHHHHHHH
Q psy9209 55 LDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDESSSQAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYR 134 (349)
Q Consensus 55 ~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 134 (349)
..-++..+...+.++|.++....... +...+...++...+.-.+...+..+|++..++.+++......|....+...+.
T Consensus 47 ~~~~~~a~~~~~~~~~~~~~llla~~-lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~ 125 (620)
T COG3914 47 QALAIYALLLGIAINDVNPELLLAAF-LSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADIS 125 (620)
T ss_pred hhHHHHHHHccCccCCCCHHHHHHHH-HHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHH
Confidence 33366667777777888877754443 55666677888889999999999999999999999999888887777766666
Q ss_pred H-HHHhCcccHHHHHH------HHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHh
Q psy9209 135 Q-AIEINNLDYRAWYG------LGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQ 191 (349)
Q Consensus 135 ~-a~~~~~~~~~~~~~------l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 191 (349)
. +....|.+...... ++.....+|+..++....+++....|.++.+...+.....+.
T Consensus 126 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~~~~~~~~~r~~~ 189 (620)
T COG3914 126 EIAEWLSPDNAEFLGHLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKYPRVLGALMTARQEQ 189 (620)
T ss_pred HHHHhcCcchHHHHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhhhHhHHHHHHHHh
Confidence 5 77778887655544 488888899999999999999999999877666555554333
No 311
>KOG1538|consensus
Probab=96.91 E-value=0.081 Score=46.76 Aligned_cols=211 Identities=14% Similarity=0.065 Sum_probs=108.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhh--------------hhchHHHHHHHHHHHHhcCCCcchHHHHHHHHHH-----
Q psy9209 42 FKYLANHHLKANNLDTAYKCAQKCLQH--------------EETAEEAKSLLRSIAQKRQPDESSSQAVLYFQRA----- 102 (349)
Q Consensus 42 ~~~l~~~~~~~~~~~~A~~~~~~~l~~--------------~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~----- 102 (349)
|..++...+..=+++-|.+.|.++-.+ ....|... +++ ..+.-.|.+.+|-+.|.+.
T Consensus 588 W~~LA~~ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~i-LlA---~~~Ay~gKF~EAAklFk~~G~enR 663 (1081)
T KOG1538|consen 588 WRELAMEALEALDFETARKAYIRVRDLRYLELISELEERKKRGETPNDL-LLA---DVFAYQGKFHEAAKLFKRSGHENR 663 (1081)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchHH-HHH---HHHHhhhhHHHHHHHHHHcCchhh
Confidence 788888888888888888888776432 01111111 111 2222247888888877653
Q ss_pred -HhhCcccHHHHHHHHHHHHhcCChHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHhCCHHHHHHHH----------HH
Q psy9209 103 -LKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEI--NNLDYRAWYGLGQTYEILRLPYYGLYYY----------KQ 169 (349)
Q Consensus 103 -~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~----------~~ 169 (349)
++...+ .-.+..+.-++..|..++-..+.++-.+- +-+.+. .-+..+...|+.++|+.+. +-
T Consensus 664 AlEmyTD--lRMFD~aQE~~~~g~~~eKKmL~RKRA~WAr~~kePk---aAAEmLiSaGe~~KAi~i~~d~gW~d~lidI 738 (1081)
T KOG1538|consen 664 ALEMYTD--LRMFDYAQEFLGSGDPKEKKMLIRKRADWARNIKEPK---AAAEMLISAGEHVKAIEICGDHGWVDMLIDI 738 (1081)
T ss_pred HHHHHHH--HHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhcCCcH---HHHHHhhcccchhhhhhhhhcccHHHHHHHH
Confidence 222111 11244455555556555554444443221 111121 2345566667777666542 22
Q ss_pred HHhcCCCChHHHHHHHHHHHHhhCHHHHHHHHHHHHccccccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCCC
Q psy9209 170 AHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPP 249 (349)
Q Consensus 170 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 249 (349)
+-+++..+.+.+...+..+.....+.-|.+.|.+.-.. -.+...+...++|.+|...-++.-+.
T Consensus 739 ~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~--------ksiVqlHve~~~W~eAFalAe~hPe~-------- 802 (1081)
T KOG1538|consen 739 ARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGDL--------KSLVQLHVETQRWDEAFALAEKHPEF-------- 802 (1081)
T ss_pred HhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhccH--------HHHhhheeecccchHhHhhhhhCccc--------
Confidence 22233344445555555555555555555555543221 12344556667777776655543333
Q ss_pred CCcchHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q psy9209 250 DKTCGFFAFKYLANHHLKANNLDTAYKCAQKC 281 (349)
Q Consensus 250 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 281 (349)
...+++..|..+....++++|.+.|.++
T Consensus 803 ----~~dVy~pyaqwLAE~DrFeEAqkAfhkA 830 (1081)
T KOG1538|consen 803 ----KDDVYMPYAQWLAENDRFEEAQKAFHKA 830 (1081)
T ss_pred ----cccccchHHHHhhhhhhHHHHHHHHHHh
Confidence 3345555566666666666666555554
No 312
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=96.90 E-value=0.0051 Score=51.88 Aligned_cols=138 Identities=14% Similarity=0.046 Sum_probs=105.1
Q ss_pred HhhCHHHHHHHHHHHHccccccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCCCCCcchHHHHHHHHHHHHHhC
Q psy9209 190 KQEKISEAMKCYNKSRAIGDADGKALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKAN 269 (349)
Q Consensus 190 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 269 (349)
..|+.-.|-.-...++...|..|......+.+...+|.|+.+...+..+-..-.. ...+...+-......|
T Consensus 301 ~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s---------~~~~~~~~~r~~~~l~ 371 (831)
T PRK15180 301 ADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGT---------TDSTLRCRLRSLHGLA 371 (831)
T ss_pred hccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcC---------CchHHHHHHHhhhchh
Confidence 4577777888888888888888888888889999999999988877665544333 3445555667778888
Q ss_pred CHHHHHHHHHHHHcccCChHHHHHHHHHHHHHcCCCCCchhHHHHhhhcCCCCCCccccCCCCCCCC
Q psy9209 270 NLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDESSSQPMECAVVLDPVPPSTRSSKFPANPAY 336 (349)
Q Consensus 270 ~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~ 336 (349)
++++|.......+...-..+++...-+.....+|-++++..++++.+.++|.....+.+++.+...+
T Consensus 372 r~~~a~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~~g~v~~~~~~~~~ 438 (831)
T PRK15180 372 RWREALSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQSGWVNFLSSTQYF 438 (831)
T ss_pred hHHHHHHHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChhcccceeeeccceec
Confidence 9999998888887766666666666666666778889999999999999988877777776554444
No 313
>KOG2422|consensus
Probab=96.83 E-value=0.26 Score=43.11 Aligned_cols=167 Identities=14% Similarity=-0.027 Sum_probs=96.8
Q ss_pred hhCcHHHHHHHHHHHHHhccccCCC---CCcchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh----------------
Q psy9209 8 KLNETEAAADLFMEFVSKLDTFAAP---PDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQH---------------- 68 (349)
Q Consensus 8 ~~g~~~~A~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~---------------- 68 (349)
....|++|...|.-++...+++..- .++......+..++.+...+|+.+-|....++++-.
T Consensus 250 hs~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~c 329 (665)
T KOG2422|consen 250 HSNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNC 329 (665)
T ss_pred cchHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccc
Confidence 3456889999998888766655311 111222357889999999999999888888877621
Q ss_pred -----hhchHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhCcc-cHHHHHHHHHHH-HhcCChHHHHHHHHHHHH---
Q psy9209 69 -----EETAEEAKSLLRSIAQKRQPDESSSQAVLYFQRALKLNPN-YLGVWTLLGHEY-MEMKNTNAAIQCYRQAIE--- 138 (349)
Q Consensus 69 -----~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~-~~~~~~~~A~~~~~~a~~--- 138 (349)
.|.+...+..+......+.+.|-+..|.++++-.++++|. +|-+...+..+| ++..+|.=-++.++..-.
T Consensus 330 RL~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~ 409 (665)
T KOG2422|consen 330 RLPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNK 409 (665)
T ss_pred cCcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhcc
Confidence 2333333333333334445567777777777777777776 665544444433 344555555555444422
Q ss_pred --hCcccHHHHHHHHHHHHHhCC---HHHHHHHHHHHHhcCC
Q psy9209 139 --INNLDYRAWYGLGQTYEILRL---PYYGLYYYKQAHMVRP 175 (349)
Q Consensus 139 --~~~~~~~~~~~l~~~~~~~~~---~~~A~~~~~~~~~~~~ 175 (349)
.-|+ ...-..++..|..... -+.|...+.+|+...|
T Consensus 410 l~~~PN-~~yS~AlA~f~l~~~~~~~rqsa~~~l~qAl~~~P 450 (665)
T KOG2422|consen 410 LSQLPN-FGYSLALARFFLRKNEEDDRQSALNALLQALKHHP 450 (665)
T ss_pred HhhcCC-chHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhCc
Confidence 2222 1222344444444443 3456666666666655
No 314
>KOG1839|consensus
Probab=96.82 E-value=0.028 Score=53.51 Aligned_cols=171 Identities=13% Similarity=0.076 Sum_probs=130.8
Q ss_pred HHHHHHHHHhcCChHHHHH------HHH-HHHHhCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--------CCCC
Q psy9209 113 WTLLGHEYMEMKNTNAAIQ------CYR-QAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMV--------RPND 177 (349)
Q Consensus 113 ~~~la~~~~~~~~~~~A~~------~~~-~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~ 177 (349)
....|......|.+.+|.+ .+. ..-.+.|.....+..++.++...|+.++|+..-.++.-+ .|+.
T Consensus 935 ~~e~gq~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t 1014 (1236)
T KOG1839|consen 935 SPEQGQEALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNT 1014 (1236)
T ss_pred hhhhhhhhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHH
Confidence 3556667777788887777 444 223346778889999999999999999999988777554 3445
Q ss_pred hHHHHHHHHHHHHhhCHHHHHHHHHHHHcc--------ccccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCCC
Q psy9209 178 PRMLTALGEAFEKQEKISEAMKCYNKSRAI--------GDADGKALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPP 249 (349)
Q Consensus 178 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 249 (349)
...+.+++...+..++...|...+.++..+ .|....+..+++.++...++++.|+.+.+.++....... ..
T Consensus 1015 ~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~-g~ 1093 (1236)
T KOG1839|consen 1015 KLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVL-GP 1093 (1236)
T ss_pred HHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhc-Cc
Confidence 567788888888888999999998888765 455556677888888899999999999999998654421 11
Q ss_pred CCcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHcc
Q psy9209 250 DKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQH 284 (349)
Q Consensus 250 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 284 (349)
........+..+++++...+++..|....+....+
T Consensus 1094 ~~l~~~~~~~~~a~l~~s~~dfr~al~~ek~t~~i 1128 (1236)
T KOG1839|consen 1094 KELETALSYHALARLFESMKDFRNALEHEKVTYGI 1128 (1236)
T ss_pred cchhhhhHHHHHHHHHhhhHHHHHHHHHHhhHHHH
Confidence 23346778888899999999999988887776554
No 315
>KOG3783|consensus
Probab=96.80 E-value=0.3 Score=42.39 Aligned_cols=224 Identities=9% Similarity=-0.082 Sum_probs=139.6
Q ss_pred HHHHHHHHHHHhhCcccHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCcc--cHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q psy9209 93 SQAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNL--DYRAWYGLGQTYEILRLPYYGLYYYKQA 170 (349)
Q Consensus 93 ~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 170 (349)
+...+.+.......|+.+......+..+...|+.+.|+..++..++..-. ..-.++.+|.++..+.+|..|...+...
T Consensus 250 ~~~~~~Ll~~~~~~p~ga~wll~~ar~l~~~g~~eaa~~~~~~~v~~~~kQ~~~l~~fE~aw~~v~~~~~~~aad~~~~L 329 (546)
T KOG3783|consen 250 EECEKALKKYRKRYPKGALWLLMEARILSIKGNSEAAIDMESLSIPIRMKQVKSLMVFERAWLSVGQHQYSRAADSFDLL 329 (546)
T ss_pred HHHHHHhHHHHHhCCCCccHHHHHHHHHHHcccHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 44445555556678888888888899999999988889999888872111 2345678888899999999999999888
Q ss_pred HhcCCCChHHHHHHH-HHHHH--------hhCHHHHHHHHHHHHcc-------cccc--------------------HH-
Q psy9209 171 HMVRPNDPRMLTALG-EAFEK--------QEKISEAMKCYNKSRAI-------GDAD--------------------GK- 213 (349)
Q Consensus 171 ~~~~~~~~~~~~~l~-~~~~~--------~~~~~~A~~~~~~a~~~-------~~~~--------------------~~- 213 (349)
.+.+.-+.-.|..++ .|+.. .|+-++|..+++..... .|-. +.
T Consensus 330 ~desdWS~a~Y~Yfa~cc~l~~~~~~q~~~~ne~~a~~~~k~~~~l~~~a~K~~P~E~f~~RKverf~~~~~~~~~~~la 409 (546)
T KOG3783|consen 330 RDESDWSHAFYTYFAGCCLLQNWEVNQGAGGNEEKAQLYFKVGEELLANAGKNLPLEKFIVRKVERFVKRGPLNASILLA 409 (546)
T ss_pred HhhhhhhHHHHHHHHHHHHhccHHHHHhcccchhHHHHHHHHHHHHHHhccccCchhHHHHHHHHHHhcccccccccccc
Confidence 776544433444333 44432 22444443333332211 1111 00
Q ss_pred -HHHHHHHHHHhc--CcHHHHHHHHHHHHhcccccCCCCCCcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHccc-----
Q psy9209 214 -ALFKLAKLYDKL--NETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHE----- 285 (349)
Q Consensus 214 -~~~~l~~~~~~~--~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~----- 285 (349)
.++.++.++.-- ...++.. -++.. ...|. ..+.....-.++.+|.++...|+...|..+|...++..
T Consensus 410 ~P~~El~Y~Wngf~~~s~~~l~-k~~~~-~~~~~---~~d~Dd~~lk~lL~g~~lR~Lg~~~~a~~~f~i~~~~e~~~~~ 484 (546)
T KOG3783|consen 410 SPYYELAYFWNGFSRMSKNELE-KMRAE-LENPK---IDDSDDEGLKYLLKGVILRNLGDSEVAPKCFKIQVEKESKRTE 484 (546)
T ss_pred chHHHHHHHHhhcccCChhhHH-HHHHH-HhccC---CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcc
Confidence 112222222211 1112222 11111 12233 22444456667788999999999999999999887431
Q ss_pred -C-ChHHHHHHHHHHHHHcCC-CCCchhHHHHhhhcCCC
Q psy9209 286 -E-TAEEAKSLLRSIAQKRQP-DESSSQPMECAVVLDPV 321 (349)
Q Consensus 286 -~-~~~~~~~~l~~~~~~~~~-~~~A~~~~~~a~~~~p~ 321 (349)
+ -.|.+++-+|.++..+|. ..++..++.+|-+...+
T Consensus 485 d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~~d 523 (546)
T KOG3783|consen 485 DLWAVPFALYELALLYWDLGGGLKEARALLLKAREYASD 523 (546)
T ss_pred ccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhccc
Confidence 1 237788999999999998 89999999998776543
No 316
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=96.80 E-value=0.2 Score=43.87 Aligned_cols=133 Identities=15% Similarity=0.145 Sum_probs=103.6
Q ss_pred cchHHHHHHHHHHHhhCcccHHHHHH--HHHHHHhcCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHHHHHHHH
Q psy9209 90 ESSSQAVLYFQRALKLNPNYLGVWTL--LGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYY 167 (349)
Q Consensus 90 ~~~~~A~~~~~~~~~~~~~~~~~~~~--la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 167 (349)
+...-++..+...+.++|.++..+.. +...+...+....+.-.+..++..+|.+..+..+++......|....+...+
T Consensus 45 ~~~~~~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~ 124 (620)
T COG3914 45 GLQALAIYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADI 124 (620)
T ss_pred CchhHHHHHHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHH
Confidence 33444666666677788888776433 4777788899989999999999999999999999999988888777666665
Q ss_pred HH-HHhcCCCChHHHHHH------HHHHHHhhCHHHHHHHHHHHHccccccHHHHHHHHHHH
Q psy9209 168 KQ-AHMVRPNDPRMLTAL------GEAFEKQEKISEAMKCYNKSRAIGDADGKALFKLAKLY 222 (349)
Q Consensus 168 ~~-~~~~~~~~~~~~~~l------~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~ 222 (349)
.. +....|.+......+ +.....+|+..++....+++....|.++.+...+....
T Consensus 125 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~~~~~~~~~r 186 (620)
T COG3914 125 SEIAEWLSPDNAEFLGHLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKYPRVLGALMTAR 186 (620)
T ss_pred HHHHHhcCcchHHHHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhhhHhHHHHHH
Confidence 55 888888887665555 88888889999999999999999988876665554443
No 317
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=96.79 E-value=0.041 Score=38.96 Aligned_cols=78 Identities=14% Similarity=-0.006 Sum_probs=53.3
Q ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhCHHHHHHHHHHHHccccccHHHHHHHHHHHHhcCcH
Q psy9209 151 GQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKLAKLYDKLNET 228 (349)
Q Consensus 151 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~ 228 (349)
...-...++.+++...+..+--+.|+.+..-..-|.++...|+|.+|+..++...+..+..+...-.++.|+..+|+.
T Consensus 17 ~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~Dp 94 (153)
T TIGR02561 17 LMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGDA 94 (153)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCCh
Confidence 333344667777777777777777777777777777777777777777777777766666666666666666666653
No 318
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=96.77 E-value=0.016 Score=49.05 Aligned_cols=122 Identities=11% Similarity=-0.037 Sum_probs=98.5
Q ss_pred CcchHHHHHHHHHHHhhCcccHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHHHHHHHHH
Q psy9209 89 DESSSQAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYK 168 (349)
Q Consensus 89 ~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 168 (349)
.|+.-.|-.-...++...|.+|......+.+...+|.|+.|...+..+-..-.....+...+-.....+|++++|.....
T Consensus 302 ~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s~a~ 381 (831)
T PRK15180 302 DGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALSTAE 381 (831)
T ss_pred ccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHHHHH
Confidence 47888888888888888899898888899999999999999888876655433444455566677788899999999888
Q ss_pred HHHhcCCCChHHHHHHHHHHHHhhCHHHHHHHHHHHHccccc
Q psy9209 169 QAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDA 210 (349)
Q Consensus 169 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~ 210 (349)
-.+.-.-.++++...-+..-..+|-++++..++++.+.++|.
T Consensus 382 ~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~ 423 (831)
T PRK15180 382 MMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPE 423 (831)
T ss_pred HHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCCh
Confidence 888877777877777777777888899999999999988764
No 319
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=96.76 E-value=0.087 Score=35.61 Aligned_cols=52 Identities=19% Similarity=0.066 Sum_probs=28.7
Q ss_pred HHhcCChHHHHHHHHHHHHhCcc------------cHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q psy9209 120 YMEMKNTNAAIQCYRQAIEINNL------------DYRAWYGLGQTYEILRLPYYGLYYYKQAH 171 (349)
Q Consensus 120 ~~~~~~~~~A~~~~~~a~~~~~~------------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 171 (349)
.+.-|-|++|...++++.+.... +.-++-.|+..+..+|+|++++..-.+++
T Consensus 19 ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL 82 (144)
T PF12968_consen 19 QLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRAL 82 (144)
T ss_dssp HHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHH
Confidence 34456677777777777664211 23445566666666777666655544443
No 320
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=96.75 E-value=0.0042 Score=31.06 Aligned_cols=28 Identities=32% Similarity=0.504 Sum_probs=12.2
Q ss_pred HHHHHHHHHHhhCHHHHHHHHHHHHccc
Q psy9209 181 LTALGEAFEKQEKISEAMKCYNKSRAIG 208 (349)
Q Consensus 181 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 208 (349)
+..+|.++...|++++|+..++++++..
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~~~~ 31 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKALELD 31 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHccC
Confidence 3344444444444444444444444433
No 321
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=96.74 E-value=0.048 Score=40.76 Aligned_cols=98 Identities=14% Similarity=0.131 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhchHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhCcc--cHH----HH
Q psy9209 40 FAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDESSSQAVLYFQRALKLNPN--YLG----VW 113 (349)
Q Consensus 40 ~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~----~~ 113 (349)
.++..+|..|.+.|+.+.|++.|.++................+..+....+++.....+..++-..-.. +.. ..
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 567778888888888888888888776554332222222222222222236777777776666544222 111 12
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHH
Q psy9209 114 TLLGHEYMEMKNTNAAIQCYRQAI 137 (349)
Q Consensus 114 ~~la~~~~~~~~~~~A~~~~~~a~ 137 (349)
..-|..++..++|..|.+.|-.+.
T Consensus 117 ~~~gL~~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 117 VYEGLANLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHHHHHHHhchHHHHHHHHHccC
Confidence 333445555566666665555443
No 322
>KOG2041|consensus
Probab=96.73 E-value=0.094 Score=46.81 Aligned_cols=31 Identities=19% Similarity=0.263 Sum_probs=20.1
Q ss_pred CcccHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q psy9209 106 NPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAI 137 (349)
Q Consensus 106 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 137 (349)
+| ++..|..++......-.++.|...|-++-
T Consensus 689 nP-HprLWrllAe~Al~Kl~l~tAE~AFVrc~ 719 (1189)
T KOG2041|consen 689 NP-HPRLWRLLAEYALFKLALDTAEHAFVRCG 719 (1189)
T ss_pred CC-chHHHHHHHHHHHHHHhhhhHhhhhhhhc
Confidence 44 36777777777666666666666666553
No 323
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=96.72 E-value=0.0033 Score=31.49 Aligned_cols=32 Identities=28% Similarity=0.296 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHcccCC
Q psy9209 256 FAFKYLANHHLKANNLDTAYKCAQKCLQHEET 287 (349)
Q Consensus 256 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 287 (349)
.++..+|.++...|++++|...++++++..|+
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 45677888888888888888888888877664
No 324
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=96.72 E-value=0.014 Score=36.12 Aligned_cols=64 Identities=13% Similarity=0.052 Sum_probs=51.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhhhhchHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhh
Q psy9209 42 FKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDESSSQAVLYFQRALKL 105 (349)
Q Consensus 42 ~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~ 105 (349)
....|.-++...+.++|+..++++++..++.++.+..++.+..++...|++.+.+.+..+-+.+
T Consensus 9 ~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~ 72 (80)
T PF10579_consen 9 QIEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLEI 72 (80)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666778888899999999999888888888888898888888888888888877665544
No 325
>KOG3807|consensus
Probab=96.64 E-value=0.28 Score=39.86 Aligned_cols=106 Identities=13% Similarity=0.095 Sum_probs=65.7
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCCCCCcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHccc-CChHHHH
Q psy9209 214 ALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHE-ETAEEAK 292 (349)
Q Consensus 214 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-~~~~~~~ 292 (349)
+...++.|..++|+..+|++.++...+..|-. ....++-+|...+....-|.+....+-+.-++. |.+....
T Consensus 277 IKRRLAMCARklGrlrEA~K~~RDL~ke~pl~-------t~lniheNLiEalLE~QAYADvqavLakYDdislPkSA~ic 349 (556)
T KOG3807|consen 277 IKRRLAMCARKLGRLREAVKIMRDLMKEFPLL-------TMLNIHENLLEALLELQAYADVQAVLAKYDDISLPKSAAIC 349 (556)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhccHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCcchHHHH
Confidence 44578889999999999999998887766531 134566667777777666666655555544332 3333322
Q ss_pred HHHHHH-------------HHHcCCC---CCchhHHHHhhhcCCCCCCcc
Q psy9209 293 SLLRSI-------------AQKRQPD---ESSSQPMECAVVLDPVPPSTR 326 (349)
Q Consensus 293 ~~l~~~-------------~~~~~~~---~~A~~~~~~a~~~~p~~~~~~ 326 (349)
+.-+.+ ..+.|-. ..|++...++++.+|.-|..+
T Consensus 350 YTaALLK~RAVa~kFspd~asrRGLS~AE~~AvEAihRAvEFNPHVPkYL 399 (556)
T KOG3807|consen 350 YTAALLKTRAVSEKFSPETASRRGLSTAEINAVEAIHRAVEFNPHVPKYL 399 (556)
T ss_pred HHHHHHHHHHHHhhcCchhhhhccccHHHHHHHHHHHHHhhcCCCCcHHH
Confidence 221111 1122211 357888899999999877643
No 326
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=96.63 E-value=0.039 Score=39.08 Aligned_cols=72 Identities=6% Similarity=-0.216 Sum_probs=38.1
Q ss_pred hcCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhC
Q psy9209 122 EMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEK 193 (349)
Q Consensus 122 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 193 (349)
..++.+++...+..+--+.|+.+..-..-|.++...|+|.+|+..++...+..+..+...-.++.|+..+|+
T Consensus 22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~D 93 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGD 93 (153)
T ss_pred hcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCC
Confidence 345555555555555555555555555555555555555555555555555544444444445555544444
No 327
>KOG3364|consensus
Probab=96.63 E-value=0.1 Score=36.20 Aligned_cols=83 Identities=16% Similarity=0.209 Sum_probs=62.3
Q ss_pred cHHHHHHHHHHHHhcC---cHHHHHHHHHHHHh-cccccCCCCCCcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHcccC
Q psy9209 211 DGKALFKLAKLYDKLN---ETEAAADLFMEFVS-KLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEE 286 (349)
Q Consensus 211 ~~~~~~~l~~~~~~~~---~~~~A~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~ 286 (349)
.....++++.++.... +..+.+.+++..++ -.|. ..-+..+.|+.-+.+.|+|+.++.+.+..++..|
T Consensus 31 s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~--------~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~ 102 (149)
T KOG3364|consen 31 SKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPE--------RRRECLYYLAVGHYRLKEYSKSLRYVDALLETEP 102 (149)
T ss_pred hHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcc--------cchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCC
Confidence 4566777787776654 45567888888886 3333 2567788889999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHH
Q psy9209 287 TAEEAKSLLRSIAQK 301 (349)
Q Consensus 287 ~~~~~~~~l~~~~~~ 301 (349)
++..+..+-..+...
T Consensus 103 ~n~Qa~~Lk~~ied~ 117 (149)
T KOG3364|consen 103 NNRQALELKETIEDK 117 (149)
T ss_pred CcHHHHHHHHHHHHH
Confidence 988887766655543
No 328
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=96.60 E-value=0.12 Score=35.04 Aligned_cols=98 Identities=15% Similarity=0.090 Sum_probs=69.1
Q ss_pred HHHHHHHH--HHHHhCCHHHHHHHHHHHHhcCCCC------------hHHHHHHHHHHHHhhCHHHHHHHHHHHHc----
Q psy9209 145 RAWYGLGQ--TYEILRLPYYGLYYYKQAHMVRPND------------PRMLTALGEAFEKQEKISEAMKCYNKSRA---- 206 (349)
Q Consensus 145 ~~~~~l~~--~~~~~~~~~~A~~~~~~~~~~~~~~------------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~---- 206 (349)
.+|..|+. -....|-|++|...+.++.+....- ..++..++..+..+|+|++++..-.+++.
T Consensus 8 ~aY~aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNR 87 (144)
T PF12968_consen 8 MAYMALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNR 87 (144)
T ss_dssp HHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhh
Confidence 34444443 3455688999999999998864332 24667888999999999988776666664
Q ss_pred ---cccccHHH----HHHHHHHHHhcCcHHHHHHHHHHHHhcc
Q psy9209 207 ---IGDADGKA----LFKLAKLYDKLNETEAAADLFMEFVSKL 242 (349)
Q Consensus 207 ---~~~~~~~~----~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 242 (349)
++.+.... .++.+..+...|+.++|+..|+.+-++-
T Consensus 88 RGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEMi 130 (144)
T PF12968_consen 88 RGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEMI 130 (144)
T ss_dssp H--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH
T ss_pred ccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHH
Confidence 44554444 4677888999999999999999987753
No 329
>KOG2422|consensus
Probab=96.59 E-value=0.23 Score=43.33 Aligned_cols=155 Identities=14% Similarity=0.135 Sum_probs=101.4
Q ss_pred hcCChHHHHHHHHHHHHh------------CcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc----------------
Q psy9209 122 EMKNTNAAIQCYRQAIEI------------NNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMV---------------- 173 (349)
Q Consensus 122 ~~~~~~~A~~~~~~a~~~------------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---------------- 173 (349)
....|++|...|.-+... .|-+...+..++.+...+|+.+-|....++++=.
T Consensus 250 hs~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~c 329 (665)
T KOG2422|consen 250 HSNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNC 329 (665)
T ss_pred cchHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccc
Confidence 345577888888877664 3556788888999999999988877777666532
Q ss_pred -----CCCChH---HHHHHHHHHHHhhCHHHHHHHHHHHHccccc-cHHHHHHHHHHH-HhcCcHHHHHHHHHHHH----
Q psy9209 174 -----RPNDPR---MLTALGEAFEKQEKISEAMKCYNKSRAIGDA-DGKALFKLAKLY-DKLNETEAAADLFMEFV---- 239 (349)
Q Consensus 174 -----~~~~~~---~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~-~~~~~~~~A~~~~~~~~---- 239 (349)
.|.+.. +++..-..+.+.|-+..|.++.+-.++++|. +|.....+..+| .+..+|.=-++.++..-
T Consensus 330 RL~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~ 409 (665)
T KOG2422|consen 330 RLPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNK 409 (665)
T ss_pred cCcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhcc
Confidence 222222 2333445566789999999999999999988 666555555544 34455655555555442
Q ss_pred -hcccccCCCCCCcchHHHHHHHHHHHHHhCC---HHHHHHHHHHHHcccC
Q psy9209 240 -SKLDTFAAPPDKTCGFFAFKYLANHHLKANN---LDTAYKCAQKCLQHEE 286 (349)
Q Consensus 240 -~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~a~~~~~ 286 (349)
...|+ ...-..++..|..... -+.|...+.+|+...|
T Consensus 410 l~~~PN----------~~yS~AlA~f~l~~~~~~~rqsa~~~l~qAl~~~P 450 (665)
T KOG2422|consen 410 LSQLPN----------FGYSLALARFFLRKNEEDDRQSALNALLQALKHHP 450 (665)
T ss_pred HhhcCC----------chHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhCc
Confidence 22333 2333456666666654 5678888888877766
No 330
>KOG1839|consensus
Probab=96.46 E-value=0.062 Score=51.30 Aligned_cols=155 Identities=15% Similarity=0.094 Sum_probs=117.6
Q ss_pred CcchHHHHH------HHHH-HHhhCcccHHHHHHHHHHHHhcCChHHHHHHHHHHHHh--------CcccHHHHHHHHHH
Q psy9209 89 DESSSQAVL------YFQR-ALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEI--------NNLDYRAWYGLGQT 153 (349)
Q Consensus 89 ~~~~~~A~~------~~~~-~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~l~~~ 153 (349)
.|.+.+|.+ .+.. .-.+.|..+..+..++.++...|++++|+..-.++.-+ .|+....+.+++..
T Consensus 945 e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal~ 1024 (1236)
T KOG1839|consen 945 EDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLALY 1024 (1236)
T ss_pred ccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHHHH
Confidence 455665555 4442 23456788889999999999999999999988887654 34556778888888
Q ss_pred HHHhCCHHHHHHHHHHHHhc--------CCCChHHHHHHHHHHHHhhCHHHHHHHHHHHHcccc--------ccHHHHHH
Q psy9209 154 YEILRLPYYGLYYYKQAHMV--------RPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGD--------ADGKALFK 217 (349)
Q Consensus 154 ~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~--------~~~~~~~~ 217 (349)
....++...|+..+.++..+ .|.......+++.++...++++.|+.+.+.|...+. .....+..
T Consensus 1025 ~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~~~~~~~ 1104 (1236)
T KOG1839|consen 1025 EFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKELETALSYHA 1104 (1236)
T ss_pred HHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccchhhhhHHHH
Confidence 88888999999998888765 455556667888888899999999999999988632 13456677
Q ss_pred HHHHHHhcCcHHHHHHHHHHHHhccc
Q psy9209 218 LAKLYDKLNETEAAADLFMEFVSKLD 243 (349)
Q Consensus 218 l~~~~~~~~~~~~A~~~~~~~~~~~~ 243 (349)
++++....+++..|....+....+.+
T Consensus 1105 ~a~l~~s~~dfr~al~~ek~t~~iy~ 1130 (1236)
T KOG1839|consen 1105 LARLFESMKDFRNALEHEKVTYGIYK 1130 (1236)
T ss_pred HHHHHhhhHHHHHHHHHHhhHHHHHH
Confidence 78888888888877777766665543
No 331
>KOG4814|consensus
Probab=96.43 E-value=0.066 Score=47.13 Aligned_cols=97 Identities=12% Similarity=0.164 Sum_probs=83.2
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCh------HHHHHHHHHHHHhhCHHHHHHHHHHHHccccccHHHHHHHH
Q psy9209 146 AWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDP------RMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKLA 219 (349)
Q Consensus 146 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~ 219 (349)
++++-|.-.++..+|..+++.|...+...|.+. .....++.||..+.+.+.|.+++++|-+.+|.++-....+-
T Consensus 356 iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~ 435 (872)
T KOG4814|consen 356 LLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLML 435 (872)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHH
Confidence 345566677788999999999999998877654 45678999999999999999999999999999998888888
Q ss_pred HHHHhcCcHHHHHHHHHHHHhcc
Q psy9209 220 KLYDKLNETEAAADLFMEFVSKL 242 (349)
Q Consensus 220 ~~~~~~~~~~~A~~~~~~~~~~~ 242 (349)
.+....|.-++|+....+.....
T Consensus 436 ~~~~~E~~Se~AL~~~~~~~s~~ 458 (872)
T KOG4814|consen 436 QSFLAEDKSEEALTCLQKIKSSE 458 (872)
T ss_pred HHHHHhcchHHHHHHHHHHHhhh
Confidence 88899999999999988776653
No 332
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=96.38 E-value=0.038 Score=36.39 Aligned_cols=65 Identities=11% Similarity=0.142 Sum_probs=49.2
Q ss_pred HhhCcHHHHHHHHHHHHHhccccCCCCCcchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhc
Q psy9209 7 DKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEET 71 (349)
Q Consensus 7 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~ 71 (349)
.+.|++..|++.+.+..+................++..+|..+...|++++|+..+++++.+...
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are 73 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLARE 73 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 57899999999998888654433332222233467888999999999999999999999977543
No 333
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.36 E-value=0.25 Score=36.13 Aligned_cols=131 Identities=11% Similarity=-0.042 Sum_probs=72.5
Q ss_pred cchHHHHHHHHHHHhhCccc--HHHHHHHHHHHHhcCChHHHHHHHHHHHHhCcc--c--HHHHHHHHHHHHHhCCHHHH
Q psy9209 90 ESSSQAVLYFQRALKLNPNY--LGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNL--D--YRAWYGLGQTYEILRLPYYG 163 (349)
Q Consensus 90 ~~~~~A~~~~~~~~~~~~~~--~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~--~--~~~~~~l~~~~~~~~~~~~A 163 (349)
+..++|+..|...-+..-.. ..+.+..|.+..+.|+...|+..|..+-.-.|- - ..+...-+.++...|-|+.-
T Consensus 72 ~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy~dV 151 (221)
T COG4649 72 NKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSYDDV 151 (221)
T ss_pred CCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccHHHH
Confidence 56666666666655443222 234566677777777777777777776554321 1 12334445556666777665
Q ss_pred HHHHHHHH-hcCCCChHHHHHHHHHHHHhhCHHHHHHHHHHHHccccccHHHHHHHHHH
Q psy9209 164 LYYYKQAH-MVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKLAKL 221 (349)
Q Consensus 164 ~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~ 221 (349)
....+..- ..+|-...+.-.||..-++.|++.+|..+|.+... +...|....+.+.+
T Consensus 152 ~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~-Da~aprnirqRAq~ 209 (221)
T COG4649 152 SSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN-DAQAPRNIRQRAQI 209 (221)
T ss_pred HHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc-cccCcHHHHHHHHH
Confidence 55444322 12333334555667777777777777777776655 33333333333333
No 334
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=96.33 E-value=0.0089 Score=45.38 Aligned_cols=58 Identities=22% Similarity=0.383 Sum_probs=44.4
Q ss_pred cCCCcchHHHHHHHHHHHhhCcccHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCccc
Q psy9209 86 RQPDESSSQAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLD 143 (349)
Q Consensus 86 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~ 143 (349)
....++.+.|.+.|.+++.+.|+....|+.+|....+.|+++.|...|++.++++|.+
T Consensus 5 ~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 5 LAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred hcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence 3445777777778888888777777777888877777888888888888888777765
No 335
>KOG4814|consensus
Probab=96.20 E-value=0.37 Score=42.79 Aligned_cols=97 Identities=15% Similarity=0.129 Sum_probs=80.0
Q ss_pred HHHHHHHHhcCCCcchHHHHHHHHHHHhhCccc------HHHHHHHHHHHHhcCChHHHHHHHHHHHHhCcccHHHHHHH
Q psy9209 77 SLLRSIAQKRQPDESSSQAVLYFQRALKLNPNY------LGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGL 150 (349)
Q Consensus 77 ~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l 150 (349)
..+-+-+...++..+|..+++.|...+..-|.+ ......+..||..+.+.+.|.+++++|-+.+|.++-....+
T Consensus 355 ~iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~ 434 (872)
T KOG4814|consen 355 TLLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLM 434 (872)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHH
Confidence 344444555667789999999999998876654 34567888999999999999999999999999999888888
Q ss_pred HHHHHHhCCHHHHHHHHHHHHhc
Q psy9209 151 GQTYEILRLPYYGLYYYKQAHMV 173 (349)
Q Consensus 151 ~~~~~~~~~~~~A~~~~~~~~~~ 173 (349)
..+....+..++|+.+.......
T Consensus 435 ~~~~~~E~~Se~AL~~~~~~~s~ 457 (872)
T KOG4814|consen 435 LQSFLAEDKSEEALTCLQKIKSS 457 (872)
T ss_pred HHHHHHhcchHHHHHHHHHHHhh
Confidence 88888999999999988877655
No 336
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=96.12 E-value=0.17 Score=33.28 Aligned_cols=65 Identities=11% Similarity=0.131 Sum_probs=49.0
Q ss_pred HHhcCcHHHHHHHHHHHHhcccccCCCCCCcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHcccC
Q psy9209 222 YDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEE 286 (349)
Q Consensus 222 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~ 286 (349)
..+.|++.+|.+.+.+.+.................+..++|.++...|++++|+..+++++++..
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Ar 72 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLAR 72 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 45778999999888888877655211111113567788899999999999999999999998753
No 337
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=96.04 E-value=0.87 Score=43.45 Aligned_cols=104 Identities=11% Similarity=-0.047 Sum_probs=75.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhhhhchHHHHHHHHHHHHhcC-------CCcchHHHHHHHHHHHhhCcccHHHHH
Q psy9209 42 FKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQ-------PDESSSQAVLYFQRALKLNPNYLGVWT 114 (349)
Q Consensus 42 ~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~-------~~~~~~~A~~~~~~~~~~~~~~~~~~~ 114 (349)
......++.....|+.|+..|+++-..-|+..+.+.....+|.... ....+++|+..|++.- -.|.-|--|.
T Consensus 478 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 556 (932)
T PRK13184 478 CLAVPDAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLH-GGVGAPLEYL 556 (932)
T ss_pred cccCcHHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhc-CCCCCchHHH
Confidence 3445567778888999999999998888887776665555544332 1125677777777643 3566677788
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHhCcccHHH
Q psy9209 115 LLGHEYMEMKNTNAAIQCYRQAIEINNLDYRA 146 (349)
Q Consensus 115 ~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~ 146 (349)
..|.+|..+|++++-++++.-+++..|+.|..
T Consensus 557 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 588 (932)
T PRK13184 557 GKALVYQRLGEYNEEIKSLLLALKRYSQHPEI 588 (932)
T ss_pred hHHHHHHHhhhHHHHHHHHHHHHHhcCCCCcc
Confidence 88889999999999999999999987776543
No 338
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=96.04 E-value=0.022 Score=30.70 Aligned_cols=29 Identities=21% Similarity=0.307 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHh
Q psy9209 111 GVWTLLGHEYMEMKNTNAAIQCYRQAIEI 139 (349)
Q Consensus 111 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~ 139 (349)
.++.++|.+|...|++++|+.++++++.+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 45666777777777777777777777664
No 339
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=96.03 E-value=0.54 Score=40.93 Aligned_cols=45 Identities=18% Similarity=0.184 Sum_probs=23.9
Q ss_pred HhcCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q psy9209 121 MEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQA 170 (349)
Q Consensus 121 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 170 (349)
.+.|+.+.|.+..++ .+++..|..||......|+++-|..+|.++
T Consensus 329 l~lg~L~~A~~~a~~-----~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~ 373 (443)
T PF04053_consen 329 LQLGNLDIALEIAKE-----LDDPEKWKQLGDEALRQGNIELAEECYQKA 373 (443)
T ss_dssp HHCT-HHHHHHHCCC-----CSTHHHHHHHHHHHHHTTBHHHHHHHHHHC
T ss_pred HhcCCHHHHHHHHHh-----cCcHHHHHHHHHHHHHcCCHHHHHHHHHhh
Confidence 355565555554322 224455666666666666666666666554
No 340
>KOG2581|consensus
Probab=95.97 E-value=0.31 Score=40.66 Aligned_cols=136 Identities=11% Similarity=0.055 Sum_probs=91.7
Q ss_pred hhCcHHHHHHHHHHHHHhccccCCCCCcchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh---hhchHHHHHHHHHHHH
Q psy9209 8 KLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQH---EETAEEAKSLLRSIAQ 84 (349)
Q Consensus 8 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~---~~~~~~~~~~l~~~~~ 84 (349)
.+.++.+|..+-...+..+.......-+...+..|+.+..++-..|+...-...+...+.. ..+......++..+..
T Consensus 138 d~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd~e~qavLiN~LLr 217 (493)
T KOG2581|consen 138 DQKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTATLRHDEEGQAVLINLLLR 217 (493)
T ss_pred hhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCcchhHHHHHHHHHH
Confidence 4577888887777766543333222223344567888888998999877776666665543 2122222333455566
Q ss_pred hcCCCcchHHHHHHHHHHHhh--Cc--ccHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCccc
Q psy9209 85 KRQPDESSSQAVLYFQRALKL--NP--NYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLD 143 (349)
Q Consensus 85 ~~~~~~~~~~A~~~~~~~~~~--~~--~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~ 143 (349)
.|...+.++.|.....+..-- .. ......+.+|.+..-+++|..|.+++-.|+...|.+
T Consensus 218 ~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq~ 280 (493)
T KOG2581|consen 218 NYLHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQH 280 (493)
T ss_pred HHhhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcch
Confidence 677778899998887776411 11 234456889999999999999999999999999974
No 341
>KOG1538|consensus
Probab=95.97 E-value=0.76 Score=41.04 Aligned_cols=182 Identities=12% Similarity=0.041 Sum_probs=97.1
Q ss_pred ChhhhHHhhCcHHHHHHHHHHHHHhccccCCCCCcchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhh--hhhchHHHHHH
Q psy9209 1 MRNKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQ--HEETAEEAKSL 78 (349)
Q Consensus 1 l~a~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~--~~~~~~~~~~~ 78 (349)
|+|.++.-+|++.+|.++|.+.-. ....-....-.-.+..+.-++..|.-++-....++--+ .+-+.|.+
T Consensus 637 LlA~~~Ay~gKF~EAAklFk~~G~-----enRAlEmyTDlRMFD~aQE~~~~g~~~eKKmL~RKRA~WAr~~kePka--- 708 (1081)
T KOG1538|consen 637 LLADVFAYQGKFHEAAKLFKRSGH-----ENRALEMYTDLRMFDYAQEFLGSGDPKEKKMLIRKRADWARNIKEPKA--- 708 (1081)
T ss_pred HHHHHHHhhhhHHHHHHHHHHcCc-----hhhHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhcCCcHH---
Confidence 456777778888888888755320 00000000001133444555555554443333332111 11111111
Q ss_pred HHHHHHhcCCCcchHHHHHHH----------HHHHhhCcccHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCcccHHHHH
Q psy9209 79 LRSIAQKRQPDESSSQAVLYF----------QRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWY 148 (349)
Q Consensus 79 l~~~~~~~~~~~~~~~A~~~~----------~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~ 148 (349)
.+..+...|+.++|+... +-+-+++....+.+...+..+.....+.-|.+.|.+.-.. -
T Consensus 709 ---AAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~--------k 777 (1081)
T KOG1538|consen 709 ---AAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGDL--------K 777 (1081)
T ss_pred ---HHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhccH--------H
Confidence 123344457777776643 1222334444556666666677777777777777665321 2
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhCHHHHHHHHHHH
Q psy9209 149 GLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKS 204 (349)
Q Consensus 149 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 204 (349)
.+.+++...++|++|....++.-+.- +.+++-.|..+.+..++++|-+.|.++
T Consensus 778 siVqlHve~~~W~eAFalAe~hPe~~---~dVy~pyaqwLAE~DrFeEAqkAfhkA 830 (1081)
T KOG1538|consen 778 SLVQLHVETQRWDEAFALAEKHPEFK---DDVYMPYAQWLAENDRFEEAQKAFHKA 830 (1081)
T ss_pred HHhhheeecccchHhHhhhhhCcccc---ccccchHHHHhhhhhhHHHHHHHHHHh
Confidence 34456667788888877766543322 356777788888888888887766655
No 342
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=95.97 E-value=0.63 Score=37.09 Aligned_cols=270 Identities=11% Similarity=-0.023 Sum_probs=157.4
Q ss_pred hhhHHhhCcHHHHHHHHHHHHHhccc-cCCCCCcchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh-----hhchHHHH
Q psy9209 3 NKLYDKLNETEAAADLFMEFVSKLDT-FAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQH-----EETAEEAK 76 (349)
Q Consensus 3 a~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~-----~~~~~~~~ 76 (349)
|+-..+.+++++|+..|.+++..--. .....+.. -.+...++..|...|++..-.+.....-+. .|......
T Consensus 10 a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEq--E~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Kii 87 (421)
T COG5159 10 ANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQ--EATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKII 87 (421)
T ss_pred HHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHH--HHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHH
Confidence 44456788999999999999853111 01111111 246789999999999987655544443322 12222221
Q ss_pred HHHHHHHHhcCCCcchHHHHHHHHHHHhhCcccHHH------HHHHHHHHHhcCChHHHHHHHHHHHHh------CcccH
Q psy9209 77 SLLRSIAQKRQPDESSSQAVLYFQRALKLNPNYLGV------WTLLGHEYMEMKNTNAAIQCYRQAIEI------NNLDY 144 (349)
Q Consensus 77 ~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~------~~~la~~~~~~~~~~~A~~~~~~a~~~------~~~~~ 144 (349)
...+-..-.....++.-+..+...++........ -..+...+++.|.|.+|+......+.- .+...
T Consensus 88 --rtLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li 165 (421)
T COG5159 88 --RTLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLI 165 (421)
T ss_pred --HHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCcccee
Confidence 1112222334566777777777777654332222 245677889999999999988776542 23446
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhc-----CCCChHH--HHHHHHHHHHhhCHHHHHHHHHHHHcccc---ccHHH
Q psy9209 145 RAWYGLGQTYEILRLPYYGLYYYKQAHMV-----RPNDPRM--LTALGEAFEKQEKISEAMKCYNKSRAIGD---ADGKA 214 (349)
Q Consensus 145 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~--~~~l~~~~~~~~~~~~A~~~~~~a~~~~~---~~~~~ 214 (349)
.++..-..+|....+..++...+..+... .|....+ -..-|...+.-.+|..|..+|-++++-.. .+..+
T Consensus 166 ~vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~lDL~sGIlhcdd~dyktA~SYF~Ea~Egft~l~~d~kA 245 (421)
T COG5159 166 TVHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQLDLLSGILHCDDRDYKTASSYFIEALEGFTLLKMDVKA 245 (421)
T ss_pred ehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHHHHhccceeeccccchhHHHHHHHHHhccccccchHHH
Confidence 67777788888888888887777666443 2222222 22335566677889999999999887632 12222
Q ss_pred H-----HHHHHHHHhcCcHHHHHHHHH--HHHhcccccCCCCCCcchHHHHHHHHHHHHH--hCCHHHHHHHHHHHHccc
Q psy9209 215 L-----FKLAKLYDKLNETEAAADLFM--EFVSKLDTFAAPPDKTCGFFAFKYLANHHLK--ANNLDTAYKCAQKCLQHE 285 (349)
Q Consensus 215 ~-----~~l~~~~~~~~~~~~A~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g~~~~A~~~~~~a~~~~ 285 (349)
. ..+..+. .+..++....++ ..++...+ ....+....+..+.. ..+|..|+..|..-+..+
T Consensus 246 c~sLkYmlLSkIM--lN~~~evk~vl~~K~t~~~y~~--------r~I~am~avaea~~NRsL~df~~aL~qY~~el~~D 315 (421)
T COG5159 246 CVSLKYMLLSKIM--LNRREEVKAVLRNKNTLKHYDD--------RMIRAMLAVAEAFGNRSLKDFSDALAQYSDELHQD 315 (421)
T ss_pred HHHHHHHHHHHHH--HhhHHHHHHHHccchhHhhhhh--------hhHHHHHHHHHHhCCCcHhhHHHHHHHhhHHhccC
Confidence 2 2223322 233333333332 22221111 145666666666644 357888888888776665
Q ss_pred C
Q psy9209 286 E 286 (349)
Q Consensus 286 ~ 286 (349)
|
T Consensus 316 ~ 316 (421)
T COG5159 316 S 316 (421)
T ss_pred H
Confidence 4
No 343
>PRK11619 lytic murein transglycosylase; Provisional
Probab=95.95 E-value=1.3 Score=40.72 Aligned_cols=120 Identities=5% Similarity=-0.080 Sum_probs=71.0
Q ss_pred HHHhhCHHHHHHHHHHHHcccccc----HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCCCCCcchHHHHHHHHH
Q psy9209 188 FEKQEKISEAMKCYNKSRAIGDAD----GKALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLAN 263 (349)
Q Consensus 188 ~~~~~~~~~A~~~~~~a~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 263 (349)
-....+.+.|...+.+.....+-. ..++..+|.-....+...+|...+..+..... ..........
T Consensus 251 Rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~~----------~~~~~e~r~r 320 (644)
T PRK11619 251 SVARQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRSQ----------STSLLERRVR 320 (644)
T ss_pred HHHHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccccC----------CcHHHHHHHH
Confidence 334556667777776543332211 22333344333333224566666655443221 1233333344
Q ss_pred HHHHhCCHHHHHHHHHHHHcccCChHHHHHHHHHHHHHcCCCCCchhHHHHhhh
Q psy9209 264 HHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDESSSQPMECAVV 317 (349)
Q Consensus 264 ~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 317 (349)
+....++++.+..++...-....+.....+++|..+...|+.++|...|+++..
T Consensus 321 ~Al~~~dw~~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~ 374 (644)
T PRK11619 321 MALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ 374 (644)
T ss_pred HHHHccCHHHHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 555788888888887775444445677888999998889999999999999743
No 344
>KOG3364|consensus
Probab=95.94 E-value=0.34 Score=33.77 Aligned_cols=72 Identities=14% Similarity=0.078 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHhcCC---hHHHHHHHHHHHH-hCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHH
Q psy9209 110 LGVWTLLGHEYMEMKN---TNAAIQCYRQAIE-INNL-DYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRML 181 (349)
Q Consensus 110 ~~~~~~la~~~~~~~~---~~~A~~~~~~a~~-~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 181 (349)
....++++.++....+ ..+.+.+++..++ -.|. ..+..+.|+..+.+.++|+.++.+.+..++..|++..+.
T Consensus 32 ~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~ 108 (149)
T KOG3364|consen 32 KQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQAL 108 (149)
T ss_pred HHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHH
Confidence 3445556665554433 3455666666664 2222 244556666666666666666666666666666665543
No 345
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=95.93 E-value=0.02 Score=30.85 Aligned_cols=30 Identities=20% Similarity=0.160 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHcc
Q psy9209 255 FFAFKYLANHHLKANNLDTAYKCAQKCLQH 284 (349)
Q Consensus 255 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 284 (349)
..++.++|.+|..+|++++|..++++++.+
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 457889999999999999999999999875
No 346
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=95.78 E-value=0.24 Score=41.54 Aligned_cols=89 Identities=20% Similarity=0.169 Sum_probs=66.7
Q ss_pred HHHHHhcCChHHHHHHHHHHHHhCc--------c-----c-----HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCh
Q psy9209 117 GHEYMEMKNTNAAIQCYRQAIEINN--------L-----D-----YRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDP 178 (349)
Q Consensus 117 a~~~~~~~~~~~A~~~~~~a~~~~~--------~-----~-----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 178 (349)
|..+++++.|..|..-|..++++.. . + ..+-..+..||.++++.+.|+....+.+.++|..+
T Consensus 183 as~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~lnP~~f 262 (569)
T PF15015_consen 183 ASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLNPSYF 262 (569)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcCcchh
Confidence 4556667777777777777766521 1 1 12344678889999999999999999999999988
Q ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHHH
Q psy9209 179 RMLTALGEAFEKQEKISEAMKCYNKSR 205 (349)
Q Consensus 179 ~~~~~l~~~~~~~~~~~~A~~~~~~a~ 205 (349)
.-+...|.+...+.+|.+|...+--+.
T Consensus 263 rnHLrqAavfR~LeRy~eAarSamia~ 289 (569)
T PF15015_consen 263 RNHLRQAAVFRRLERYSEAARSAMIAD 289 (569)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888889999999999988877665543
No 347
>KOG1310|consensus
Probab=95.78 E-value=0.067 Score=46.03 Aligned_cols=85 Identities=16% Similarity=0.072 Sum_probs=51.8
Q ss_pred ChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHh---CCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhCHHHHHHHH
Q psy9209 125 NTNAAIQCYRQAIEINNLDYRAWYGLGQTYEIL---RLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCY 201 (349)
Q Consensus 125 ~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~---~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 201 (349)
....|+..|.+++...|.....+.+.+.++.+. |+.-.|+.-...+++++|....+++.++.++..++++.+|+.+.
T Consensus 389 ~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el~r~~eal~~~ 468 (758)
T KOG1310|consen 389 IVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNELTRYLEALSCH 468 (758)
T ss_pred HHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHhhHHHhhhhH
Confidence 345566666666666666666666666555543 34445555556666666666666666666666666666666666
Q ss_pred HHHHcccc
Q psy9209 202 NKSRAIGD 209 (349)
Q Consensus 202 ~~a~~~~~ 209 (349)
..+....|
T Consensus 469 ~alq~~~P 476 (758)
T KOG1310|consen 469 WALQMSFP 476 (758)
T ss_pred HHHhhcCc
Confidence 55555555
No 348
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=95.74 E-value=0.03 Score=44.66 Aligned_cols=86 Identities=9% Similarity=0.088 Sum_probs=58.1
Q ss_pred HHHHHhhCcccHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCcccHHHHHH-HHHHHHHhCCHHHHHHHHHHHHhcCCCC
Q psy9209 99 FQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYG-LGQTYEILRLPYYGLYYYKQAHMVRPND 177 (349)
Q Consensus 99 ~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~-l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 177 (349)
|.++....|+++..|...+......|-+.+-...|.+++..+|.+++.|.. -+.-+...++.+.+...+.+++..+|.+
T Consensus 96 ~~R~tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~ 175 (435)
T COG5191 96 LYRSTNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRS 175 (435)
T ss_pred eehhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCC
Confidence 334444456667777776666666777777777777777777777777765 3445566677777777777777777777
Q ss_pred hHHHHHH
Q psy9209 178 PRMLTAL 184 (349)
Q Consensus 178 ~~~~~~l 184 (349)
|..|...
T Consensus 176 p~iw~ey 182 (435)
T COG5191 176 PRIWIEY 182 (435)
T ss_pred chHHHHH
Confidence 7766544
No 349
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.61 E-value=1.4 Score=38.46 Aligned_cols=154 Identities=18% Similarity=0.150 Sum_probs=89.1
Q ss_pred CcchHHHHHHHHHHHhhCccc-HHHHHHHHHHHHhcCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHHHHHHHH
Q psy9209 89 DESSSQAVLYFQRALKLNPNY-LGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYY 167 (349)
Q Consensus 89 ~~~~~~A~~~~~~~~~~~~~~-~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 167 (349)
.++++++.+..... ++-|.- ..-...++..+.+.|-++.|+... .++...+.|+ .+.|+.+.|.+..
T Consensus 274 ~~d~~~v~~~i~~~-~ll~~i~~~~~~~i~~fL~~~G~~e~AL~~~--------~D~~~rFeLA---l~lg~L~~A~~~a 341 (443)
T PF04053_consen 274 RGDFEEVLRMIAAS-NLLPNIPKDQGQSIARFLEKKGYPELALQFV--------TDPDHRFELA---LQLGNLDIALEIA 341 (443)
T ss_dssp TT-HHH-----HHH-HTGGG--HHHHHHHHHHHHHTT-HHHHHHHS--------S-HHHHHHHH---HHCT-HHHHHHHC
T ss_pred cCChhhhhhhhhhh-hhcccCChhHHHHHHHHHHHCCCHHHHHhhc--------CChHHHhHHH---HhcCCHHHHHHHH
Confidence 37888877776521 222332 234566777888888888887753 2345555554 5788888887765
Q ss_pred HHHHhcCCCChHHHHHHHHHHHHhhCHHHHHHHHHHHHccccccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCC
Q psy9209 168 KQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAA 247 (349)
Q Consensus 168 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 247 (349)
++ .+++..|..+|.....+|+++-|..+|+++-. +..+..+|...|+.+.=.+....+......
T Consensus 342 ~~-----~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d--------~~~L~lLy~~~g~~~~L~kl~~~a~~~~~~--- 405 (443)
T PF04053_consen 342 KE-----LDDPEKWKQLGDEALRQGNIELAEECYQKAKD--------FSGLLLLYSSTGDREKLSKLAKIAEERGDI--- 405 (443)
T ss_dssp CC-----CSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT---------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-H---
T ss_pred Hh-----cCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC--------ccccHHHHHHhCCHHHHHHHHHHHHHccCH---
Confidence 43 34778999999999999999999999988643 334666677777765555554444432211
Q ss_pred CCCCcchHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q psy9209 248 PPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKC 281 (349)
Q Consensus 248 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 281 (349)
...-.+++..|+.++.++.+.+.
T Consensus 406 -----------n~af~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 406 -----------NIAFQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp -----------HHHHHHHHHHT-HHHHHHHHHHT
T ss_pred -----------HHHHHHHHHcCCHHHHHHHHHHc
Confidence 11223344456666666665543
No 350
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=95.55 E-value=0.035 Score=44.31 Aligned_cols=77 Identities=16% Similarity=0.261 Sum_probs=44.1
Q ss_pred hchHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhCcccHHHHHH-HHHHHHhcCChHHHHHHHHHHHHhCcccHHHHH
Q psy9209 70 ETAEEAKSLLRSIAQKRQPDESSSQAVLYFQRALKLNPNYLGVWTL-LGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWY 148 (349)
Q Consensus 70 ~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~-la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~ 148 (349)
|+++..|..+...... .|.+.+--..|.++++.+|.+.+.|.. -+.-+...++++.+...|.+++..+|+++..|.
T Consensus 104 f~D~k~w~~y~~Y~~k---~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~ 180 (435)
T COG5191 104 FNDPKIWSQYAAYVIK---KKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWI 180 (435)
T ss_pred CCCcHHHHHHHHHHHH---HHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHH
Confidence 3444444443333222 355666666666666666666666644 444455566666666666666666666666655
Q ss_pred H
Q psy9209 149 G 149 (349)
Q Consensus 149 ~ 149 (349)
.
T Consensus 181 e 181 (435)
T COG5191 181 E 181 (435)
T ss_pred H
Confidence 4
No 351
>KOG1310|consensus
Probab=95.55 E-value=0.092 Score=45.25 Aligned_cols=84 Identities=17% Similarity=0.131 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHHHHHHHHh---hCHHHHHHHHHHHHccccccHHHHHHHHHHHHhcCcHHHHHHHHH
Q psy9209 160 PYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQ---EKISEAMKCYNKSRAIGDADGKALFKLAKLYDKLNETEAAADLFM 236 (349)
Q Consensus 160 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 236 (349)
...|+..|.+++...|.....+.+.+.++++. |+.-.|+.-...+++++|....+++.|+.++..++++.+|+....
T Consensus 390 ~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el~r~~eal~~~~ 469 (758)
T KOG1310|consen 390 VSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNELTRYLEALSCHW 469 (758)
T ss_pred HHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHhhHHHhhhhHH
Confidence 34444444444444444444444444444432 222333333444444444444444444444444444444444444
Q ss_pred HHHhccc
Q psy9209 237 EFVSKLD 243 (349)
Q Consensus 237 ~~~~~~~ 243 (349)
.+....|
T Consensus 470 alq~~~P 476 (758)
T KOG1310|consen 470 ALQMSFP 476 (758)
T ss_pred HHhhcCc
Confidence 4444433
No 352
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=95.55 E-value=0.15 Score=40.29 Aligned_cols=70 Identities=16% Similarity=0.049 Sum_probs=45.6
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHH
Q psy9209 114 TLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTA 183 (349)
Q Consensus 114 ~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 183 (349)
.++=..+...++++.|..+.++.+.++|.++.-+.-.|.+|.++|-+.-|++-+...++..|+++.+-..
T Consensus 185 ~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~i 254 (269)
T COG2912 185 RNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEMI 254 (269)
T ss_pred HHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHHH
Confidence 3344456666667777777777777767666666666777777777777777776666666666654443
No 353
>KOG1463|consensus
Probab=95.47 E-value=1.2 Score=36.57 Aligned_cols=276 Identities=12% Similarity=0.039 Sum_probs=163.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhh--hhchHHH-----HHHHHHHHHhcCCCcchHHHHHHHHHH---HhhCcccH--
Q psy9209 43 KYLANHHLKANNLDTAYKCAQKCLQH--EETAEEA-----KSLLRSIAQKRQPDESSSQAVLYFQRA---LKLNPNYL-- 110 (349)
Q Consensus 43 ~~l~~~~~~~~~~~~A~~~~~~~l~~--~~~~~~~-----~~~l~~~~~~~~~~~~~~~A~~~~~~~---~~~~~~~~-- 110 (349)
...+.......+.++++..+..++.. .|.+.+. -.....++..+.+.|+.++-....... +..-+...
T Consensus 8 ~e~~~~~~~~~~~~~~~~il~~vl~~~~~~~s~e~~i~~kE~~Ilel~~ll~~~~~~~~lr~li~~~Rpf~~~v~Kakaa 87 (411)
T KOG1463|consen 8 LERAQNLVSVNQVEEAINILKSVLNKAQGASSDEARIKEKEQSILELGDLLAKEGDAEELRDLITSLRPFLSSVSKAKAA 87 (411)
T ss_pred HHHHHHhcccchhhhhHHHHHHHhhhhccccCCHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHhhhHHHH
Confidence 45666666777788888888888863 1211111 112344556666667776655444433 22222211
Q ss_pred HHHHHHHH-HHHhcCChHHHHHHHHHHHHhCcccH------HHHHHHHHHHHHhCCHHHHHHHHHHHHhc----C--CCC
Q psy9209 111 GVWTLLGH-EYMEMKNTNAAIQCYRQAIEINNLDY------RAWYGLGQTYEILRLPYYGLYYYKQAHMV----R--PND 177 (349)
Q Consensus 111 ~~~~~la~-~~~~~~~~~~A~~~~~~a~~~~~~~~------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~--~~~ 177 (349)
.....+-. +....+..+.-+..+..+++-....- ..-..+...|...++|.+|+......+.- + +.-
T Consensus 88 KlvR~Lvd~~~~~~~~~~~~i~l~~~cIeWA~~ekRtFLRq~Learli~Ly~d~~~YteAlaL~~~L~rElKKlDDK~lL 167 (411)
T KOG1463|consen 88 KLVRSLVDMFLKIDDGTGDQIELCTECIEWAKREKRTFLRQSLEARLIRLYNDTKRYTEALALINDLLRELKKLDDKILL 167 (411)
T ss_pred HHHHHHHHHHccCCCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccce
Confidence 11112222 22233455566777777776533322 22346788999999999999887766543 2 223
Q ss_pred hHHHHHHHHHHHHhhCHHHHHHHHHHHHcc-----ccccHH--HHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCCCC
Q psy9209 178 PRMLTALGEAFEKQEKISEAMKCYNKSRAI-----GDADGK--ALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPD 250 (349)
Q Consensus 178 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-----~~~~~~--~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 250 (349)
.+++..-..+|....+..+|...+..+-.. .|.... .=..-|.++....+|.-|..+|-++++-... ...
T Consensus 168 vev~llESK~y~~l~Nl~KakasLTsART~AnaiYcpPqlQa~lDLqSGIlha~ekDykTafSYFyEAfEgf~s---~~~ 244 (411)
T KOG1463|consen 168 VEVHLLESKAYHALRNLPKAKASLTSARTTANAIYCPPQLQATLDLQSGILHAAEKDYKTAFSYFYEAFEGFDS---LDD 244 (411)
T ss_pred eeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccccCHHHHHHHHHhccceeecccccchHHHHHHHHHccccc---cCC
Confidence 466677788899999999999888877544 121111 2223356666778999999999999986654 223
Q ss_pred CcchHHHHHHHHHHHHHhCCHHHHHHHH--HHHHcccCChHHHHHHHHHHHHH--cCCCCCchhHHHHhhhcCCC
Q psy9209 251 KTCGFFAFKYLANHHLKANNLDTAYKCA--QKCLQHEETAEEAKSLLRSIAQK--RQPDESSSQPMECAVVLDPV 321 (349)
Q Consensus 251 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~--~~a~~~~~~~~~~~~~l~~~~~~--~~~~~~A~~~~~~a~~~~p~ 321 (349)
......++..+-.+-...+..++-...+ +.+++......++...++..+.. +.+++.|+..|+.-+..||-
T Consensus 245 ~v~A~~sLKYMlLcKIMln~~ddv~~lls~K~~l~y~g~~i~AmkavAeA~~nRSLkdF~~AL~~yk~eL~~D~i 319 (411)
T KOG1463|consen 245 DVKALTSLKYMLLCKIMLNLPDDVAALLSAKLALKYAGRDIDAMKAVAEAFGNRSLKDFEKALADYKKELAEDPI 319 (411)
T ss_pred cHHHHHHHHHHHHHHHHhcCHHHHHHHHhhHHHHhccCcchHHHHHHHHHhcCCcHHHHHHHHHHhHHHHhcChH
Confidence 2333444444455555566666544443 44566666677777777777653 33556666666665555553
No 354
>KOG0529|consensus
Probab=95.45 E-value=1.3 Score=37.22 Aligned_cols=170 Identities=14% Similarity=0.152 Sum_probs=117.0
Q ss_pred HHHhcCCH-HHHHHHHHHHhhhhhchHHHHHHHHHHHHhc---------CCCcchHHHHHHHHHHHhhCcccHHHHHHHH
Q psy9209 48 HHLKANNL-DTAYKCAQKCLQHEETAEEAKSLLRSIAQKR---------QPDESSSQAVLYFQRALKLNPNYLGVWTLLG 117 (349)
Q Consensus 48 ~~~~~~~~-~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~---------~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la 117 (349)
...+.|.+ +++++.-.+.+..+|+....|..-..+.... .+..-.++-+.+...+++.+|+...+|+.+.
T Consensus 37 ~~r~~~~yd~e~l~lt~~ll~~npe~~t~wN~Rr~~~~~r~~~~~~~~~ek~~~ld~eL~~~~~~L~~npksY~aW~hR~ 116 (421)
T KOG0529|consen 37 KKREAKEYDEEHLELTSELLEKNPEFYTVWNYRRLIIEERLTRAQLEPLEKQALLDEELKYVESALKVNPKSYGAWHHRK 116 (421)
T ss_pred HHHhccccchHHHHHHHHHHhhCchhhhhhhhHHHHHHHhhhhhcCCHHHHHHhhHHHHHHHHHHHHhCchhHHHHHHHH
Confidence 33344554 4566666777777888776665433222111 1122456667788889999999999999999
Q ss_pred HHHHhcCC--hHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhC----CHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH-
Q psy9209 118 HEYMEMKN--TNAAIQCYRQAIEINNLDYRAWYGLGQTYEILR----LPYYGLYYYKQAHMVRPNDPRMLTALGEAFEK- 190 (349)
Q Consensus 118 ~~~~~~~~--~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~----~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~- 190 (349)
.++.+.+. +..=+.+.+++++.+|.+..+|...-.+..... ...+-+++..+++..++.+-.+|.....++..
T Consensus 117 w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~~El~ftt~~I~~nfSNYsaWhyRs~lL~~l 196 (421)
T KOG0529|consen 117 WVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEKEELEFTTKLINDNFSNYSAWHYRSLLLSTL 196 (421)
T ss_pred HHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccchhHHHHHHHHHhccchhhhHHHHHHHHHHHh
Confidence 99987764 578899999999999999877765544444332 35677888999999999999999888777652
Q ss_pred -----hhC------HHHHHHHHHHHHccccccHHHHHH
Q psy9209 191 -----QEK------ISEAMKCYNKSRAIGDADGKALFK 217 (349)
Q Consensus 191 -----~~~------~~~A~~~~~~a~~~~~~~~~~~~~ 217 (349)
.|+ ...-++.-..++-.+|++..+|+.
T Consensus 197 ~~~~~~g~~~~~~~l~sEle~v~saiFTdp~DqS~WfY 234 (421)
T KOG0529|consen 197 HPKEADGNFMPKELLQSELEMVHSAIFTDPEDQSCWFY 234 (421)
T ss_pred ccccccCccCCHHHHHHHHHHHHHHHhcCccccceeee
Confidence 231 233445556666678887766654
No 355
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=95.38 E-value=2.7 Score=40.30 Aligned_cols=98 Identities=14% Similarity=-0.003 Sum_probs=68.2
Q ss_pred hHHhhCcHHHHHHHHHHHHHhccccCCCCCcchhHHHHHHHHHHHHhc----C---CHHHHHHHHHHHhhhhhchHHHHH
Q psy9209 5 LYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKA----N---NLDTAYKCAQKCLQHEETAEEAKS 77 (349)
Q Consensus 5 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~---~~~~A~~~~~~~l~~~~~~~~~~~ 77 (349)
.+.....|++|+..|+++... -|....+..+.+..|.....+ | .+++|+..|++.-. .|.-| ..
T Consensus 484 ~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~ 554 (932)
T PRK13184 484 AFLAEKLYDQALIFYRRIRES------FPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHG-GVGAP--LE 554 (932)
T ss_pred HHHhhHHHHHHHHHHHHHhhc------CCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcC-CCCCc--hH
Confidence 466778899999999998843 334444457888888887653 3 36677777776543 22222 22
Q ss_pred HHHHHHHhcCCCcchHHHHHHHHHHHhhCcccHHH
Q psy9209 78 LLRSIAQKRQPDESSSQAVLYFQRALKLNPNYLGV 112 (349)
Q Consensus 78 ~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 112 (349)
.++ -+.+|.+.|++++-++++.-+++..|++|..
T Consensus 555 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 588 (932)
T PRK13184 555 YLG-KALVYQRLGEYNEEIKSLLLALKRYSQHPEI 588 (932)
T ss_pred HHh-HHHHHHHhhhHHHHHHHHHHHHHhcCCCCcc
Confidence 244 3467888899999999999999998887643
No 356
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.32 E-value=0.78 Score=33.67 Aligned_cols=122 Identities=7% Similarity=-0.072 Sum_probs=92.1
Q ss_pred HHHhcCChHHHHHHHHHHHHhCccc--HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCh----HHHHHHHHHHHHhh
Q psy9209 119 EYMEMKNTNAAIQCYRQAIEINNLD--YRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDP----RMLTALGEAFEKQE 192 (349)
Q Consensus 119 ~~~~~~~~~~A~~~~~~a~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~ 192 (349)
-+.+.+..++|+..|...-+-.-.. .-+.+..+.+....|+...|+..|.++-...|... .+...-+.++...|
T Consensus 67 ~lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~g 146 (221)
T COG4649 67 KLAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNG 146 (221)
T ss_pred HHHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccc
Confidence 3446678899999998876643332 45667888999999999999999999876544321 24455677788899
Q ss_pred CHHHHHHHHHHHH-ccccccHHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Q psy9209 193 KISEAMKCYNKSR-AIGDADGKALFKLAKLYDKLNETEAAADLFMEFVS 240 (349)
Q Consensus 193 ~~~~A~~~~~~a~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 240 (349)
.|++-....+..- ..+|-...+.-.||..-.+.|++..|...|.+...
T Consensus 147 sy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 147 SYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred cHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 9998777665533 22555667778899999999999999999998876
No 357
>KOG2581|consensus
Probab=95.29 E-value=0.62 Score=39.00 Aligned_cols=129 Identities=9% Similarity=-0.020 Sum_probs=84.8
Q ss_pred HHHhCCHHHHHHHHHHHHhc-CCC--------ChHHHHHHHHHHHHhhCHHHHHHHHHHHHccc----c--ccHHHHHHH
Q psy9209 154 YEILRLPYYGLYYYKQAHMV-RPN--------DPRMLTALGEAFEKQEKISEAMKCYNKSRAIG----D--ADGKALFKL 218 (349)
Q Consensus 154 ~~~~~~~~~A~~~~~~~~~~-~~~--------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~----~--~~~~~~~~l 218 (349)
++..+++.+|.++-+..+.. .-. ....|+.+..+|...|+...-...+...+... . ......+.+
T Consensus 136 l~d~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd~e~qavLiN~L 215 (493)
T KOG2581|consen 136 LIDQKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTATLRHDEEGQAVLINLL 215 (493)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCcchhHHHHHHHH
Confidence 34567888888877665542 111 12456677777777787666666655555441 1 123445566
Q ss_pred HHHHHhcCcHHHHHHHHHHHHhcccccCCCCCCcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHcccCC
Q psy9209 219 AKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEET 287 (349)
Q Consensus 219 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 287 (349)
-..|...+.++.|.....+.. .|. .......+..++.+|.+..-+++|..|.+++-.++...|.
T Consensus 216 Lr~yL~n~lydqa~~lvsK~~--~pe---~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq 279 (493)
T KOG2581|consen 216 LRNYLHNKLYDQADKLVSKSV--YPE---AASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQ 279 (493)
T ss_pred HHHHhhhHHHHHHHHHhhccc--Ccc---ccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcc
Confidence 777777888888877765543 343 2233456777788888888888888888888888888886
No 358
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=95.29 E-value=1.7 Score=37.27 Aligned_cols=191 Identities=9% Similarity=-0.023 Sum_probs=114.9
Q ss_pred HHHHHHhcCCCcchHHHHHHHHHHHhhCcccHHHHHHH------HHHHH-hcCCh---HHHHHHHHHHHHhCccc---HH
Q psy9209 79 LRSIAQKRQPDESSSQAVLYFQRALKLNPNYLGVWTLL------GHEYM-EMKNT---NAAIQCYRQAIEINNLD---YR 145 (349)
Q Consensus 79 l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l------a~~~~-~~~~~---~~A~~~~~~a~~~~~~~---~~ 145 (349)
++.+.....+.++...|.+++.-...++|+.....-.+ -.+.. .-..+ ..=+..++.+-..+-+. +.
T Consensus 301 F~~~Ls~~Vk~~~T~~a~q~l~lL~~ldp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDrqQLvh 380 (549)
T PF07079_consen 301 FGNLLSFKVKQVQTEEAKQYLALLKILDPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDRQQLVH 380 (549)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHhcCCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccHHHHHH
Confidence 44444444556788888888888778888754221111 11111 11111 11233333332222222 33
Q ss_pred HHHHHHHHHHHhCC-HHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhCHHHHHH--HHHHHHc---------ccc---c
Q psy9209 146 AWYGLGQTYEILRL-PYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMK--CYNKSRA---------IGD---A 210 (349)
Q Consensus 146 ~~~~l~~~~~~~~~-~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~--~~~~a~~---------~~~---~ 210 (349)
.+..-|.-+++.|. -++|+..++.+++..|.+..+-...- .+-...|.+|+. .+.+.+. +.| .
T Consensus 381 ~L~~~Ak~lW~~g~~dekalnLLk~il~ft~yD~ec~n~v~--~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~ 458 (549)
T PF07079_consen 381 YLVFGAKHLWEIGQCDEKALNLLKLILQFTNYDIECENIVF--LFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITIS 458 (549)
T ss_pred HHHHHHHHHHhcCCccHHHHHHHHHHHHhccccHHHHHHHH--HHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCccccc
Confidence 44556777888887 78999999999999888875433221 111222333322 1122221 122 2
Q ss_pred cHHHHHHH--HHHHHhcCcHHHHHHHHHHHHhcccccCCCCCCcchHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q psy9209 211 DGKALFKL--AKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKC 281 (349)
Q Consensus 211 ~~~~~~~l--~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 281 (349)
+.+.-..+ |..++.+|++.++..+-.=..++.|. +.++..+|.++...++|++|..++.+.
T Consensus 459 e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaPS----------~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 459 EEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAPS----------PQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred HHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCc----------HHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 33444444 44567899999999988888889885 999999999999999999999998764
No 359
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=95.17 E-value=1.8 Score=37.06 Aligned_cols=217 Identities=11% Similarity=0.012 Sum_probs=145.5
Q ss_pred HHHHHhhhhhchHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhCcccHHHHHHHHHHHHhcCChHHHHHHHHHHHHh-
Q psy9209 61 CAQKCLQHEETAEEAKSLLRSIAQKRQPDESSSQAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEI- 139 (349)
Q Consensus 61 ~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~- 139 (349)
.+++++..-|-.++.|.-.... ....++-+.|+...++++...|. ....++.+|...++-+.-..+|+++++-
T Consensus 290 ~~~q~~~y~~~~~evw~dys~Y---~~~isd~q~al~tv~rg~~~sps---L~~~lse~yel~nd~e~v~~~fdk~~q~L 363 (660)
T COG5107 290 IHNQILDYFYYAEEVWFDYSEY---LIGISDKQKALKTVERGIEMSPS---LTMFLSEYYELVNDEEAVYGCFDKCTQDL 363 (660)
T ss_pred HHHHHHHHhhhhHHHHHHHHHH---HhhccHHHHHHHHHHhcccCCCc---hheeHHHHHhhcccHHHHhhhHHHHHHHH
Confidence 4566666666666665544332 33457888999988888777765 6677788887777777777777766542
Q ss_pred -----------------Ccc-cH-----------HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHH-HHH
Q psy9209 140 -----------------NNL-DY-----------RAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGE-AFE 189 (349)
Q Consensus 140 -----------------~~~-~~-----------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~-~~~ 189 (349)
+|. .+ -+|..+...-.+..-.+.|...|.++-+..-....++..-|. -+.
T Consensus 364 ~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~ 443 (660)
T COG5107 364 KRKYSMGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYY 443 (660)
T ss_pred HHHHhhhhhhhhccccCCccccHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHH
Confidence 010 01 122222223334445678888888887654233333333332 245
Q ss_pred HhhCHHHHHHHHHHHHccccccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCCCCCcchHHHHHHHHHHHHHhC
Q psy9209 190 KQEKISEAMKCYNKSRAIGDADGKALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKAN 269 (349)
Q Consensus 190 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 269 (349)
..|++..|-..|+-.+...|+.+......-..+...++-+.|...|++++..-.. . .....|-.+...-..-|
T Consensus 444 ~~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi~inde~naraLFetsv~r~~~------~-q~k~iy~kmi~YEs~~G 516 (660)
T COG5107 444 ATGDRATAYNIFELGLLKFPDSTLYKEKYLLFLIRINDEENARALFETSVERLEK------T-QLKRIYDKMIEYESMVG 516 (660)
T ss_pred hcCCcchHHHHHHHHHHhCCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHHHHH------h-hhhHHHHHHHHHHHhhc
Confidence 6899999999999999999988877777777888999999999999988875443 0 13566666666667778
Q ss_pred CHHHHHHHHHHHHcccCChHH
Q psy9209 270 NLDTAYKCAQKCLQHEETAEE 290 (349)
Q Consensus 270 ~~~~A~~~~~~a~~~~~~~~~ 290 (349)
+...+...=++..+..|....
T Consensus 517 ~lN~v~sLe~rf~e~~pQen~ 537 (660)
T COG5107 517 SLNNVYSLEERFRELVPQENL 537 (660)
T ss_pred chHHHHhHHHHHHHHcCcHhH
Confidence 888888887777777776533
No 360
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=94.98 E-value=0.19 Score=31.28 Aligned_cols=56 Identities=21% Similarity=0.264 Sum_probs=44.4
Q ss_pred HhhCcHHHHHHHHHHHHHhccccCCCCCcchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh
Q psy9209 7 DKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQH 68 (349)
Q Consensus 7 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~ 68 (349)
....+.++|+..+++++++. ++...++.++-.+..++...|++.+++.+...-+.+
T Consensus 17 Y~~~~~~~Al~~W~~aL~k~------~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~ 72 (80)
T PF10579_consen 17 YHQNETQQALQKWRKALEKI------TDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLEI 72 (80)
T ss_pred hccchHHHHHHHHHHHHhhc------CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47788999999999999543 334456678889999999999999998887665544
No 361
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=94.88 E-value=0.048 Score=25.86 Aligned_cols=24 Identities=25% Similarity=0.074 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHH
Q psy9209 256 FAFKYLANHHLKANNLDTAYKCAQ 279 (349)
Q Consensus 256 ~~~~~l~~~~~~~g~~~~A~~~~~ 279 (349)
.+...+|.++..+|++++|...++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 456788899999999999988765
No 362
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=94.87 E-value=0.34 Score=38.89 Aligned_cols=65 Identities=11% Similarity=0.001 Sum_probs=59.2
Q ss_pred hHHHHHHHHHHHHHhCCHHHHHHHHHHHHcccCChHHHHHHHHHHHHHcCCCCCchhHHHHhhhc
Q psy9209 254 GFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDESSSQPMECAVVL 318 (349)
Q Consensus 254 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 318 (349)
...++..++..+...|+++.+...+++.+..+|-+...+..+-..+...|+...|+..|++.-..
T Consensus 152 ~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~ 216 (280)
T COG3629 152 FIKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT 216 (280)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 57788889999999999999999999999999999999999999999999999999999887653
No 363
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=94.82 E-value=0.77 Score=34.71 Aligned_cols=73 Identities=18% Similarity=0.224 Sum_probs=49.0
Q ss_pred ChHHHHHHHHHHHHh-CcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC----ChHHHHHHHHHHHHhhCHHHHH
Q psy9209 125 NTNAAIQCYRQAIEI-NNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPN----DPRMLTALGEAFEKQEKISEAM 198 (349)
Q Consensus 125 ~~~~A~~~~~~a~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~A~ 198 (349)
.-+.|...|-++-.. .-++++..+.+|..|. ..+.++++..+.+++++.+. +++++..++.++..+|+++.|-
T Consensus 121 ~d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 121 GDQEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred CcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 335666666554332 1135677777776665 56778888888888877443 4677888888888888887764
No 364
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=94.81 E-value=0.43 Score=40.12 Aligned_cols=56 Identities=16% Similarity=0.141 Sum_probs=39.1
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHHHHHHHHHH
Q psy9209 114 TLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQ 169 (349)
Q Consensus 114 ~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 169 (349)
..+..||+.+++.+-|+....+.+.++|....-+...+.++..+.+|.+|...+.-
T Consensus 232 tklv~CYL~~rkpdlALnh~hrsI~lnP~~frnHLrqAavfR~LeRy~eAarSami 287 (569)
T PF15015_consen 232 TKLVTCYLRMRKPDLALNHSHRSINLNPSYFRNHLRQAAVFRRLERYSEAARSAMI 287 (569)
T ss_pred HHHHHhhhhcCCCchHHHHHhhhhhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666777777777777777777777777777777777777777777776555443
No 365
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=94.48 E-value=0.11 Score=27.37 Aligned_cols=29 Identities=41% Similarity=0.611 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHh
Q psy9209 111 GVWTLLGHEYMEMKNTNAAIQCYRQAIEI 139 (349)
Q Consensus 111 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~ 139 (349)
+++..+|.+-...++|++|+.-|++++++
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEI 30 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 35667777777777777777777777765
No 366
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=94.47 E-value=0.86 Score=36.20 Aligned_cols=72 Identities=13% Similarity=-0.046 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhCHHHHHHHHHHHHccccccHHHHHH
Q psy9209 146 AWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKALFK 217 (349)
Q Consensus 146 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~ 217 (349)
...++-..+...++++.|..+.++.+.++|.++.-+.-.|.+|.++|.+.-|+.-+...++..|+.+.+-..
T Consensus 183 ll~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~i 254 (269)
T COG2912 183 LLRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEMI 254 (269)
T ss_pred HHHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHHH
Confidence 344555677788899999999999999999999888899999999999999999999888888877665443
No 367
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=94.45 E-value=0.074 Score=25.20 Aligned_cols=22 Identities=9% Similarity=0.093 Sum_probs=11.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHH
Q psy9209 112 VWTLLGHEYMEMKNTNAAIQCY 133 (349)
Q Consensus 112 ~~~~la~~~~~~~~~~~A~~~~ 133 (349)
+...+|.++...|++++|...+
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l 24 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLL 24 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHH
Confidence 3444555555555555555444
No 368
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=94.42 E-value=0.34 Score=38.87 Aligned_cols=80 Identities=18% Similarity=0.130 Sum_probs=59.7
Q ss_pred hHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhCHHHHHHHHHHHH
Q psy9209 126 TNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSR 205 (349)
Q Consensus 126 ~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 205 (349)
+..=+...+++++ .....++..++..+...|+++.+...+++.+..+|-+...|..+-..|...|+...|+..|++.-
T Consensus 137 f~~WV~~~R~~l~--e~~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~ 214 (280)
T COG3629 137 FDEWVLEQRRALE--ELFIKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLK 214 (280)
T ss_pred HHHHHHHHHHHHH--HHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHH
Confidence 4444444555544 23466777888888888888888888888888888888888888888888888888888888776
Q ss_pred cc
Q psy9209 206 AI 207 (349)
Q Consensus 206 ~~ 207 (349)
+.
T Consensus 215 ~~ 216 (280)
T COG3629 215 KT 216 (280)
T ss_pred HH
Confidence 53
No 369
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=94.37 E-value=0.19 Score=26.11 Aligned_cols=32 Identities=13% Similarity=-0.044 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHhCCHHHHHHH--HHHHHcccCC
Q psy9209 256 FAFKYLANHHLKANNLDTAYKC--AQKCLQHEET 287 (349)
Q Consensus 256 ~~~~~l~~~~~~~g~~~~A~~~--~~~a~~~~~~ 287 (349)
+.+..+|..+..+|++++|+.. |.-+..+++.
T Consensus 2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~ 35 (36)
T PF07720_consen 2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKY 35 (36)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccc
Confidence 4577888899999999999999 4466665553
No 370
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=94.22 E-value=0.25 Score=25.66 Aligned_cols=20 Identities=15% Similarity=0.139 Sum_probs=9.9
Q ss_pred HHHHHHHHHhcCChHHHHHH
Q psy9209 113 WTLLGHEYMEMKNTNAAIQC 132 (349)
Q Consensus 113 ~~~la~~~~~~~~~~~A~~~ 132 (349)
+..+|-.+...|++++|+..
T Consensus 4 ~y~~a~~~y~~~ky~~A~~~ 23 (36)
T PF07720_consen 4 LYGLAYNFYQKGKYDEAIHF 23 (36)
T ss_dssp HHHHHHHHHHTT-HHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHH
Confidence 44445555555555555555
No 371
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=93.54 E-value=1.7 Score=34.88 Aligned_cols=60 Identities=17% Similarity=0.081 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHcccCChHHHHHHHHHHHHHcCCCCCchhHHHHh
Q psy9209 256 FAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDESSSQPMECA 315 (349)
Q Consensus 256 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 315 (349)
..+...+..|...|.+.+|+.+.++++..+|-+...+..+-.++..+|+.-.+...|++.
T Consensus 280 kllgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 280 KLLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 344556778888999999999999999999999999999999999999988888888775
No 372
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=93.52 E-value=0.5 Score=38.44 Aligned_cols=62 Identities=18% Similarity=0.172 Sum_probs=50.3
Q ss_pred HHHHHHHHHhhCcccHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Q psy9209 95 AVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEI 156 (349)
Q Consensus 95 A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~ 156 (349)
|..+|.+|+.+.|..+..++.+|.++...|+.-.|+-+|-+++-.....+.+..++...+.+
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 67889999999999999999999999999999999999999887655557788888887777
No 373
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=93.47 E-value=0.17 Score=26.56 Aligned_cols=29 Identities=21% Similarity=0.288 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHcc
Q psy9209 256 FAFKYLANHHLKANNLDTAYKCAQKCLQH 284 (349)
Q Consensus 256 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 284 (349)
+++..||.+-...++|++|+.-|++++++
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEI 30 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 46777888888888888888888888765
No 374
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=93.14 E-value=0.67 Score=37.67 Aligned_cols=62 Identities=26% Similarity=0.283 Sum_probs=43.3
Q ss_pred HHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Q psy9209 129 AIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEK 190 (349)
Q Consensus 129 A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 190 (349)
|..+|.+|..+.|.....+..+|.+....|+.-.|+-+|-+++-.....+.+..++...+.+
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 56778888888888888888888888878888888877777776544446666677666655
No 375
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=93.00 E-value=2.8 Score=35.87 Aligned_cols=60 Identities=18% Similarity=0.155 Sum_probs=37.1
Q ss_pred hhhhHHhhCcHHHHHHHHHHHHHhccccCCCCCcchhHHHHHH--HHHHHHhcCCHHHHHHHHHHHhhh
Q psy9209 2 RNKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKY--LANHHLKANNLDTAYKCAQKCLQH 68 (349)
Q Consensus 2 ~a~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--l~~~~~~~~~~~~A~~~~~~~l~~ 68 (349)
+++-+.+.++|..|..++..+...++... . +..+.. .|..++..-++.+|.+.++..+..
T Consensus 137 ~a~~l~n~~~y~aA~~~l~~l~~rl~~~~-----~--~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 137 RAKELFNRYDYGAAARILEELLRRLPGRE-----E--YQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHhCCchh-----h--HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 35556678888888888888775422211 1 123333 344456677788888888877654
No 376
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=92.51 E-value=2.4 Score=34.08 Aligned_cols=53 Identities=23% Similarity=0.293 Sum_probs=28.6
Q ss_pred HHHHHhcCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHHHHHHHHHH
Q psy9209 117 GHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQ 169 (349)
Q Consensus 117 a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 169 (349)
+..|...|.+.+|+++.++++.++|-+...+..+..++...|+--.+.+.|++
T Consensus 286 a~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyer 338 (361)
T COG3947 286 ARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYER 338 (361)
T ss_pred HHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHH
Confidence 44455555555555555555555555555555555555555555555544444
No 377
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=92.31 E-value=5 Score=32.29 Aligned_cols=34 Identities=29% Similarity=0.337 Sum_probs=22.4
Q ss_pred ccccHHHHHHHHHH-HHhcCcHHHHHHHHHHHHhc
Q psy9209 208 GDADGKALFKLAKL-YDKLNETEAAADLFMEFVSK 241 (349)
Q Consensus 208 ~~~~~~~~~~l~~~-~~~~~~~~~A~~~~~~~~~~ 241 (349)
.|...+.+...+.+ |...++...|...+....+.
T Consensus 136 ~~~e~dlfi~RaVL~yL~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 136 YPSEADLFIARAVLQYLCLGNLRDANELFDTFTSK 170 (260)
T ss_dssp SS--HHHHHHHHHHHHHHTTBHHHHHHHHHHHHHH
T ss_pred CCcchhHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 45555665555544 67789999999888776665
No 378
>KOG0529|consensus
Probab=91.97 E-value=7 Score=33.19 Aligned_cols=154 Identities=12% Similarity=0.060 Sum_probs=110.6
Q ss_pred chHHHHHHHHHHHhhCcccHHHHHHHHHHHH------------hcCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhC
Q psy9209 91 SSSQAVLYFQRALKLNPNYLGVWTLLGHEYM------------EMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILR 158 (349)
Q Consensus 91 ~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~------------~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~ 158 (349)
-..++++.-.+.+..+|+...+|+..-.++. ...-.++-+.+...++..+|+...+|+....++.+.+
T Consensus 44 yd~e~l~lt~~ll~~npe~~t~wN~Rr~~~~~r~~~~~~~~~ek~~~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p 123 (421)
T KOG0529|consen 44 YDEEHLELTSELLEKNPEFYTVWNYRRLIIEERLTRAQLEPLEKQALLDEELKYVESALKVNPKSYGAWHHRKWVLQKNP 123 (421)
T ss_pred cchHHHHHHHHHHhhCchhhhhhhhHHHHHHHhhhhhcCCHHHHHHhhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCC
Confidence 3456777777788888887777644333322 2224567788888999999999999999999999776
Q ss_pred C--HHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhh----CHHHHHHHHHHHHccccccHHHHHHHHHHHHh------cC
Q psy9209 159 L--PYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQE----KISEAMKCYNKSRAIGDADGKALFKLAKLYDK------LN 226 (349)
Q Consensus 159 ~--~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~------~~ 226 (349)
. +..-+.+.+++++.+|.+..+|...-.+..... ...+=+++..+++..++.+..+|.....+... .|
T Consensus 124 ~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~~El~ftt~~I~~nfSNYsaWhyRs~lL~~l~~~~~~g 203 (421)
T KOG0529|consen 124 HSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEKEELEFTTKLINDNFSNYSAWHYRSLLLSTLHPKEADG 203 (421)
T ss_pred CchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccchhHHHHHHHHHhccchhhhHHHHHHHHHHHhccccccC
Confidence 4 578899999999999999888765544444332 35667888999999999999999887776552 23
Q ss_pred c------HHHHHHHHHHHHhcccc
Q psy9209 227 E------TEAAADLFMEFVSKLDT 244 (349)
Q Consensus 227 ~------~~~A~~~~~~~~~~~~~ 244 (349)
+ ...-......++-.+|+
T Consensus 204 ~~~~~~~l~sEle~v~saiFTdp~ 227 (421)
T KOG0529|consen 204 NFMPKELLQSELEMVHSAIFTDPE 227 (421)
T ss_pred ccCCHHHHHHHHHHHHHHHhcCcc
Confidence 1 22334455566666776
No 379
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=91.08 E-value=0.84 Score=24.93 Aligned_cols=26 Identities=15% Similarity=0.222 Sum_probs=23.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhh
Q psy9209 43 KYLANHHLKANNLDTAYKCAQKCLQH 68 (349)
Q Consensus 43 ~~l~~~~~~~~~~~~A~~~~~~~l~~ 68 (349)
+.++..|...|+.+.|...+++++..
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHHc
Confidence 56899999999999999999999853
No 380
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=90.92 E-value=6.8 Score=31.02 Aligned_cols=55 Identities=15% Similarity=0.098 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHhcccccCCCCCCcchHHHHHHHHHHH-HHhCCHHHHHHHHHHHHc
Q psy9209 228 TEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHH-LKANNLDTAYKCAQKCLQ 283 (349)
Q Consensus 228 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~~~A~~~~~~a~~ 283 (349)
.+.|...|++++.+.... ....+|.......+.+..| .-.|+.++|....++++.
T Consensus 142 ~~~a~~aY~~A~~~a~~~-L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd 197 (236)
T PF00244_consen 142 AEKALEAYEEALEIAKKE-LPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFD 197 (236)
T ss_dssp HHHHHHHHHHHHHHHHHH-SCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHH
T ss_pred HHHHHHhhhhHHHHHhcc-cCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 367888888887765431 1222444444555555555 447999999998888765
No 381
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=90.87 E-value=11 Score=33.25 Aligned_cols=184 Identities=14% Similarity=0.114 Sum_probs=110.3
Q ss_pred cchHHHHHHHHHHHhhCcccHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHHHHHHHHHH
Q psy9209 90 ESSSQAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQ 169 (349)
Q Consensus 90 ~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 169 (349)
-.+.-....+.+.+....+ ..++..++.+|... ..++-...+++.++.+-++...-..|+..|.. ++...+..+|.+
T Consensus 80 ~k~~~veh~c~~~l~~~e~-kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa~~yEk-ik~sk~a~~f~K 156 (711)
T COG1747 80 HKNQIVEHLCTRVLEYGES-KMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELADKYEK-IKKSKAAEFFGK 156 (711)
T ss_pred hHHHHHHHHHHHHHHhcch-HHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHHHHHHH-hchhhHHHHHHH
Confidence 3455556677787776554 67888999999888 56777888999999888887777788887776 888889999988
Q ss_pred HHhcCCC---Ch---HHHHHHHHHHHHhhCHHHHHHHHHHHHcc-ccccHHHHH-HHHHHHHhcCcHHHHHHHHHHHHhc
Q psy9209 170 AHMVRPN---DP---RMLTALGEAFEKQEKISEAMKCYNKSRAI-GDADGKALF-KLAKLYDKLNETEAAADLFMEFVSK 241 (349)
Q Consensus 170 ~~~~~~~---~~---~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-~~~~~~~~~-~l~~~~~~~~~~~~A~~~~~~~~~~ 241 (349)
++...-. ++ ++|..+-.. --.+.+.-.....+.-.. ......+.+ .+-.-|....++++|++.+.-.++.
T Consensus 157 a~yrfI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~eN~~eai~Ilk~il~~ 234 (711)
T COG1747 157 ALYRFIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENENWTEAIRILKHILEH 234 (711)
T ss_pred HHHHhcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhccccCHHHHHHHHHHHhhh
Confidence 8764211 11 222222210 012222222222222111 111122222 2223455667888888888888777
Q ss_pred ccccCCCCCCcchHHHHHHHHHHHHH--------------------hCCHHHHHHHHHHHHcccCC
Q psy9209 242 LDTFAAPPDKTCGFFAFKYLANHHLK--------------------ANNLDTAYKCAQKCLQHEET 287 (349)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~l~~~~~~--------------------~g~~~~A~~~~~~a~~~~~~ 287 (349)
+.. +..+.-.+...+.. -.++.+++.-|++.+..+..
T Consensus 235 d~k---------~~~ar~~~i~~lRd~y~~~~~~e~yl~~s~i~~~~rnf~~~l~dFek~m~f~eG 291 (711)
T COG1747 235 DEK---------DVWARKEIIENLRDKYRGHSQLEEYLKISNISQSGRNFFEALNDFEKLMHFDEG 291 (711)
T ss_pred cch---------hhhHHHHHHHHHHHHhccchhHHHHHHhcchhhccccHHHHHHHHHHHheeccC
Confidence 665 44554444444443 34667777777777665543
No 382
>PF12854 PPR_1: PPR repeat
Probab=90.85 E-value=0.95 Score=23.02 Aligned_cols=28 Identities=18% Similarity=0.287 Sum_probs=24.7
Q ss_pred hHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q psy9209 254 GFFAFKYLANHHLKANNLDTAYKCAQKC 281 (349)
Q Consensus 254 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a 281 (349)
+...|..+...+.+.|+.++|.+.|++.
T Consensus 6 d~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 6 DVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred cHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 5788999999999999999999998763
No 383
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=90.80 E-value=0.79 Score=22.57 Aligned_cols=22 Identities=23% Similarity=0.362 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHhCcccHHHHH
Q psy9209 127 NAAIQCYRQAIEINNLDYRAWY 148 (349)
Q Consensus 127 ~~A~~~~~~a~~~~~~~~~~~~ 148 (349)
+.+...|++++...|.++..|.
T Consensus 4 ~~~r~i~e~~l~~~~~~~~~W~ 25 (33)
T smart00386 4 ERARKIYERALEKFPKSVELWL 25 (33)
T ss_pred HHHHHHHHHHHHHCCCChHHHH
Confidence 3344444444444443333333
No 384
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=90.77 E-value=4.2 Score=32.47 Aligned_cols=58 Identities=14% Similarity=0.178 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHccccc------cHHHHHHHHHHHHhcCcHHHHHHHHHH
Q psy9209 180 MLTALGEAFEKQEKISEAMKCYNKSRAIGDA------DGKALFKLAKLYDKLNETEAAADLFME 237 (349)
Q Consensus 180 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~------~~~~~~~l~~~~~~~~~~~~A~~~~~~ 237 (349)
+...+|..|...|++++|..+|+.+...... ...++..+..|+...|+.+..+...-+
T Consensus 180 l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~le 243 (247)
T PF11817_consen 180 LSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLE 243 (247)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 3445666666666666666666666443211 234455566666666666665554433
No 385
>PF12854 PPR_1: PPR repeat
Probab=90.73 E-value=0.73 Score=23.46 Aligned_cols=26 Identities=12% Similarity=0.255 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHH
Q psy9209 110 LGVWTLLGHEYMEMKNTNAAIQCYRQ 135 (349)
Q Consensus 110 ~~~~~~la~~~~~~~~~~~A~~~~~~ 135 (349)
...|..+...+.+.|+.++|.++|++
T Consensus 7 ~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 7 VVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred HhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 44555566666666666666666554
No 386
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=90.62 E-value=0.69 Score=25.27 Aligned_cols=26 Identities=15% Similarity=0.222 Sum_probs=23.4
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHcc
Q psy9209 259 KYLANHHLKANNLDTAYKCAQKCLQH 284 (349)
Q Consensus 259 ~~l~~~~~~~g~~~~A~~~~~~a~~~ 284 (349)
+.|+..|..+|+.+.|...++.++..
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHHc
Confidence 57899999999999999999999854
No 387
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=90.60 E-value=6 Score=33.94 Aligned_cols=60 Identities=15% Similarity=0.153 Sum_probs=36.9
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHh--------cCCCChHHHHHHHHHHHHhhCHHHHHHHHHHHHc
Q psy9209 147 WYGLGQTYEILRLPYYGLYYYKQAHM--------VRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRA 206 (349)
Q Consensus 147 ~~~l~~~~~~~~~~~~A~~~~~~~~~--------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 206 (349)
...|.+++.-+|+|..|++.++..-- ..+-....++.+|-+|+.+++|.+|++.|...+-
T Consensus 125 ligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~ 192 (404)
T PF10255_consen 125 LIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL 192 (404)
T ss_pred HHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666667777777666554211 0112335667778888888888888887777653
No 388
>KOG4014|consensus
Probab=90.59 E-value=5.7 Score=29.63 Aligned_cols=109 Identities=17% Similarity=0.051 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhCcccHHHHHHHHHHHH-----hcCChHHHHHHHHHHHHhCcccHHHH
Q psy9209 73 EEAKSLLRSIAQKRQPDESSSQAVLYFQRALKLNPNYLGVWTLLGHEYM-----EMKNTNAAIQCYRQAIEINNLDYRAW 147 (349)
Q Consensus 73 ~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~-----~~~~~~~A~~~~~~a~~~~~~~~~~~ 147 (349)
|+....|+...... +.++++|.+.|..--..+. .+...+.+|..+. ..+++..|++.+..+... +.+.+.
T Consensus 34 Pe~C~lLgdYlEgi--~knF~~A~kv~K~nCden~-y~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~~--n~~~aC 108 (248)
T KOG4014|consen 34 PESCQLLGDYLEGI--QKNFQAAVKVFKKNCDENS-YPKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACDA--NIPQAC 108 (248)
T ss_pred chHHHHHHHHHHHH--HHHHHHHHHHHHhcccccC-CcHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhcc--CCHHHH
Confidence 34444444433322 2455555555544332221 2334444443332 233455566666655542 344455
Q ss_pred HHHHHHHHHh-----CC--HHHHHHHHHHHHhcCCCChHHHHHHHHHH
Q psy9209 148 YGLGQTYEIL-----RL--PYYGLYYYKQAHMVRPNDPRMLTALGEAF 188 (349)
Q Consensus 148 ~~l~~~~~~~-----~~--~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 188 (349)
..+|.++..- ++ .++|..++.++-.+ ++..+.+.|...+
T Consensus 109 ~~~gLl~~~g~~~r~~dpd~~Ka~~y~traCdl--~~~~aCf~LS~m~ 154 (248)
T KOG4014|consen 109 RYLGLLHWNGEKDRKADPDSEKAERYMTRACDL--EDGEACFLLSTMY 154 (248)
T ss_pred hhhhhhhccCcCCccCCCCcHHHHHHHHHhccC--CCchHHHHHHHHH
Confidence 5555544421 12 34555555555443 2334444444433
No 389
>KOG2114|consensus
Probab=90.57 E-value=13 Score=34.77 Aligned_cols=51 Identities=12% Similarity=0.066 Sum_probs=28.1
Q ss_pred HHHHhcCcHHHHHHHHHHHHhcccccCCCCCCcchHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q psy9209 220 KLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCL 282 (349)
Q Consensus 220 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 282 (349)
.++...|+|++|++++..+ .|. .........|..+... .+++-...+-+.+
T Consensus 498 ille~~~ny~eAl~yi~sl---p~~--------e~l~~l~kyGk~Ll~h-~P~~t~~ili~~~ 548 (933)
T KOG2114|consen 498 ILLEDLHNYEEALRYISSL---PIS--------ELLRTLNKYGKILLEH-DPEETMKILIELI 548 (933)
T ss_pred HHHHHhcCHHHHHHHHhcC---CHH--------HHHHHHHHHHHHHHhh-ChHHHHHHHHHHH
Confidence 3456677788888776543 111 1345555667766664 4444444444443
No 390
>PF13041 PPR_2: PPR repeat family
Probab=90.23 E-value=2.1 Score=23.98 Aligned_cols=28 Identities=21% Similarity=0.305 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHcc
Q psy9209 180 MLTALGEAFEKQEKISEAMKCYNKSRAI 207 (349)
Q Consensus 180 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 207 (349)
.|..+-..+.+.|++++|.++|++..+.
T Consensus 5 ~yn~li~~~~~~~~~~~a~~l~~~M~~~ 32 (50)
T PF13041_consen 5 TYNTLISGYCKAGKFEEALKLFKEMKKR 32 (50)
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHHc
Confidence 3444444455555555555555554443
No 391
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=90.16 E-value=8 Score=30.62 Aligned_cols=31 Identities=16% Similarity=0.230 Sum_probs=25.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhhhhch
Q psy9209 42 FKYLANHHLKANNLDTAYKCAQKCLQHEETA 72 (349)
Q Consensus 42 ~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~ 72 (349)
+..++.+..+.|+|++.+.+.++++..+|+-
T Consensus 4 li~~Aklaeq~eRy~dmv~~mk~~~~~~~eL 34 (236)
T PF00244_consen 4 LIYLAKLAEQAERYDDMVEYMKQLIEMNPEL 34 (236)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHHHTSS--
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHccCCCC
Confidence 5678889999999999999999999886643
No 392
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=90.16 E-value=11 Score=32.32 Aligned_cols=61 Identities=10% Similarity=-0.160 Sum_probs=43.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHhCcccH--HHHHHHH--HHHHHhCCHHHHHHHHHHHHhc
Q psy9209 113 WTLLGHEYMEMKNTNAAIQCYRQAIEINNLDY--RAWYGLG--QTYEILRLPYYGLYYYKQAHMV 173 (349)
Q Consensus 113 ~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~--~~~~~l~--~~~~~~~~~~~A~~~~~~~~~~ 173 (349)
....+...+..++|..|...+..+...-|... ..+..+. ..++..-++.+|.+.++..+..
T Consensus 134 ~~~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 134 EWRRAKELFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 35567778899999999999999988523332 3344444 4456678889999999987764
No 393
>PF13041 PPR_2: PPR repeat family
Probab=90.15 E-value=2.1 Score=23.95 Aligned_cols=32 Identities=28% Similarity=0.200 Sum_probs=27.8
Q ss_pred cHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc
Q psy9209 211 DGKALFKLAKLYDKLNETEAAADLFMEFVSKL 242 (349)
Q Consensus 211 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 242 (349)
+...|..+-..+.+.|++++|.+.|++..+..
T Consensus 2 ~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g 33 (50)
T PF13041_consen 2 DVVTYNTLISGYCKAGKFEEALKLFKEMKKRG 33 (50)
T ss_pred chHHHHHHHHHHHHCcCHHHHHHHHHHHHHcC
Confidence 45678888899999999999999999998754
No 394
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=90.03 E-value=1.1 Score=22.07 Aligned_cols=27 Identities=11% Similarity=-0.036 Sum_probs=14.4
Q ss_pred CHHHHHHHHHHHHhcCCCChHHHHHHH
Q psy9209 159 LPYYGLYYYKQAHMVRPNDPRMLTALG 185 (349)
Q Consensus 159 ~~~~A~~~~~~~~~~~~~~~~~~~~l~ 185 (349)
+.+.+...|++++...|.++..|...+
T Consensus 2 ~~~~~r~i~e~~l~~~~~~~~~W~~y~ 28 (33)
T smart00386 2 DIERARKIYERALEKFPKSVELWLKYA 28 (33)
T ss_pred cHHHHHHHHHHHHHHCCCChHHHHHHH
Confidence 345555555555555555555554444
No 395
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=89.88 E-value=8.8 Score=30.66 Aligned_cols=85 Identities=11% Similarity=0.012 Sum_probs=56.5
Q ss_pred cHHHHHHHHHHHHhcccccCCCCCCcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHcccC------ChHHHHHHHHHHHH
Q psy9209 227 ETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEE------TAEEAKSLLRSIAQ 300 (349)
Q Consensus 227 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~------~~~~~~~~l~~~~~ 300 (349)
.....++.+.++...... .........+...+|..|+..|++++|..+|+.+..... -...+...+..|..
T Consensus 153 hs~~iI~lL~~A~~~f~~---~~~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~ 229 (247)
T PF11817_consen 153 HSKLIIELLEKAYEQFKK---YGQNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAK 229 (247)
T ss_pred hHHHHHHHHHHHHHHHHH---hccchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHH
Confidence 334556666666665543 112223466677889999999999999999999864421 23456667788888
Q ss_pred HcCCCCCchhHHHH
Q psy9209 301 KRQPDESSSQPMEC 314 (349)
Q Consensus 301 ~~~~~~~A~~~~~~ 314 (349)
..|+.+..+.+.-+
T Consensus 230 ~~~~~~~~l~~~le 243 (247)
T PF11817_consen 230 RLGDVEDYLTTSLE 243 (247)
T ss_pred HhCCHHHHHHHHHH
Confidence 88888766655433
No 396
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=89.71 E-value=3.1 Score=32.03 Aligned_cols=53 Identities=15% Similarity=0.064 Sum_probs=29.1
Q ss_pred cchHHHHHHHHHHHhhCcccHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCcc
Q psy9209 90 ESSSQAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNL 142 (349)
Q Consensus 90 ~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 142 (349)
+...+++...+.-++..|.+......+-.++.-.|+|++|..-++-+-++.|+
T Consensus 15 ~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~ 67 (273)
T COG4455 15 NSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQ 67 (273)
T ss_pred ccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcc
Confidence 45555555555555555555555555555555555555555555555555554
No 397
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=89.62 E-value=9.6 Score=30.72 Aligned_cols=66 Identities=9% Similarity=-0.054 Sum_probs=40.1
Q ss_pred ccHHHHHHHHHHHHhcCChHHHHHHHHHHHH----------------hCcccHHHHHHHHH-HHHHhCCHHHHHHHHHHH
Q psy9209 108 NYLGVWTLLGHEYMEMKNTNAAIQCYRQAIE----------------INNLDYRAWYGLGQ-TYEILRLPYYGLYYYKQA 170 (349)
Q Consensus 108 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~----------------~~~~~~~~~~~l~~-~~~~~~~~~~A~~~~~~~ 170 (349)
.++..+..+|..+.+.|++.+|..+|-..-. -.|...+.+...+. -|...++...|...+...
T Consensus 88 Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~dlfi~RaVL~yL~l~n~~~A~~~~~~f 167 (260)
T PF04190_consen 88 GDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEADLFIARAVLQYLCLGNLRDANELFDTF 167 (260)
T ss_dssp --HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--HHHHHHHHHHHHHHTTBHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 3678899999999999999999888743211 12333444444433 455677777777766555
Q ss_pred Hhc
Q psy9209 171 HMV 173 (349)
Q Consensus 171 ~~~ 173 (349)
.+.
T Consensus 168 ~~~ 170 (260)
T PF04190_consen 168 TSK 170 (260)
T ss_dssp HHH
T ss_pred HHH
Confidence 544
No 398
>KOG0686|consensus
Probab=89.08 E-value=6.7 Score=33.25 Aligned_cols=96 Identities=18% Similarity=0.116 Sum_probs=71.9
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHhCcc---cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC--------CChH
Q psy9209 111 GVWTLLGHEYMEMKNTNAAIQCYRQAIEINNL---DYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRP--------NDPR 179 (349)
Q Consensus 111 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--------~~~~ 179 (349)
.++..+|.-|...|+++.|++.|-++-..... ....+.++..+-...|+|..-..+..++...-. -.+.
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~k 230 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAK 230 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcc
Confidence 46788999999999999999999997665332 356777888888889999888777777765410 0123
Q ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHc
Q psy9209 180 MLTALGEAFEKQEKISEAMKCYNKSRA 206 (349)
Q Consensus 180 ~~~~l~~~~~~~~~~~~A~~~~~~a~~ 206 (349)
+...-|.+.+.+++|..|..++-.+..
T Consensus 231 l~C~agLa~L~lkkyk~aa~~fL~~~~ 257 (466)
T KOG0686|consen 231 LKCAAGLANLLLKKYKSAAKYFLLAEF 257 (466)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 455667777788899999998876643
No 399
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=89.06 E-value=6.1 Score=27.68 Aligned_cols=43 Identities=7% Similarity=-0.134 Sum_probs=23.6
Q ss_pred HHHHHHHHHHH--hCcccHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q psy9209 128 AAIQCYRQAIE--INNLDYRAWYGLGQTYEILRLPYYGLYYYKQA 170 (349)
Q Consensus 128 ~A~~~~~~a~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 170 (349)
.+.++|..+.. +....+..|...|..+...|++++|.++|+.+
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~G 125 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQLG 125 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHhh
Confidence 55555555544 23344555556666666666666666666554
No 400
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=88.94 E-value=12 Score=30.98 Aligned_cols=152 Identities=11% Similarity=0.023 Sum_probs=77.5
Q ss_pred HHHHHHHHHHHhcCCCChHHHHHHHHHHHHh--------------------------hCHHHHHHHHHHHHccc-cccHH
Q psy9209 161 YYGLYYYKQAHMVRPNDPRMLTALGEAFEKQ--------------------------EKISEAMKCYNKSRAIG-DADGK 213 (349)
Q Consensus 161 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------------------------~~~~~A~~~~~~a~~~~-~~~~~ 213 (349)
++|+..-.-...+.|..++++-.++.++++. +-.+++...+.+++... |.-..
T Consensus 213 ~EairLgRll~~L~p~EPE~~GL~ALmll~~sR~~AR~~~~G~~vlL~dQDr~lW~r~lI~eg~all~rA~~~~~pGPYq 292 (415)
T COG4941 213 DEAIRLGRLLARLLPGEPEALGLLALMLLQESRRPARFDADGEPVLLEDQDRSLWDRALIDEGLALLDRALASRRPGPYQ 292 (415)
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhhhhccCCCCCeeeccccchhhhhHHHHHHHHHHHHHHHHcCCCChHH
Confidence 4555555555556666666655555444422 22456666666666542 22222
Q ss_pred HHHHHHHHHHh-----cCcHHHHHHHHHHHHhcccccCCCCCCcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHcc--cC
Q psy9209 214 ALFKLAKLYDK-----LNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQH--EE 286 (349)
Q Consensus 214 ~~~~l~~~~~~-----~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~--~~ 286 (349)
..-.++-++.. .-+|..-...|.-...+.|+ +.+-.+.+.......-.+.++...+-.... -.
T Consensus 293 lqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~~apS----------PvV~LNRAVAla~~~Gp~agLa~ve~L~~~~~L~ 362 (415)
T COG4941 293 LQAAIAALHARARRAEDTDWPAIDALYDALEQAAPS----------PVVTLNRAVALAMREGPAAGLAMVEALLARPRLD 362 (415)
T ss_pred HHHHHHHHHHhhcccCCCChHHHHHHHHHHHHhCCC----------CeEeehHHHHHHHhhhHHhHHHHHHHhhcccccc
Confidence 22223333222 23455555555555555554 344444455544444455555555544433 12
Q ss_pred ChHHHHHHHHHHHHHcCCCCCchhHHHHhhhcCCCC
Q psy9209 287 TAEEAKSLLRSIAQKRQPDESSSQPMECAVVLDPVP 322 (349)
Q Consensus 287 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~ 322 (349)
.....+...+.++.+.|+.++|...|++++.+.++.
T Consensus 363 gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~ 398 (415)
T COG4941 363 GYHLYHAARADLLARLGRVEEARAAYDRAIALARNA 398 (415)
T ss_pred cccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCCh
Confidence 333444555666666666666666666666665554
No 401
>KOG0276|consensus
Probab=88.76 E-value=12 Score=33.71 Aligned_cols=46 Identities=13% Similarity=0.076 Sum_probs=23.5
Q ss_pred HhcCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q psy9209 121 MEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAH 171 (349)
Q Consensus 121 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 171 (349)
.+.|+++.|..+..++ ++..-|..||......+++..|.+++.++.
T Consensus 648 l~lgrl~iA~~la~e~-----~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~ 693 (794)
T KOG0276|consen 648 LKLGRLDIAFDLAVEA-----NSEVKWRQLGDAALSAGELPLASECFLRAR 693 (794)
T ss_pred hhcCcHHHHHHHHHhh-----cchHHHHHHHHHHhhcccchhHHHHHHhhc
Confidence 4455555555443332 233445555555555555555555555553
No 402
>KOG0546|consensus
Probab=88.67 E-value=0.96 Score=37.22 Aligned_cols=131 Identities=19% Similarity=0.179 Sum_probs=83.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhhhhchHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhCcccHHHHHHHHHHHHhc
Q psy9209 44 YLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDESSSQAVLYFQRALKLNPNYLGVWTLLGHEYMEM 123 (349)
Q Consensus 44 ~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~ 123 (349)
..|...++.++++.|..-+.+++..-...+ ..+..+... +...+.+.-.....+++.+-...
T Consensus 227 ~~~~~~~kk~~~~~a~~k~~k~~r~~~~~s---------------~~~~~e~~~---~~~~~~~~r~~~~~n~~~~~lk~ 288 (372)
T KOG0546|consen 227 NIGNKEFKKQRYREALAKYRKALRYLSEQS---------------RDREKEQEN---RIPPLRELRFSIRRNLAAVGLKV 288 (372)
T ss_pred ccchhhhhhccHhHHHHHHHHHhhhhcccc---------------ccccccccc---ccccccccccccccchHHhcccc
Confidence 345567788888888888877764321000 001111110 11111222233445577777888
Q ss_pred CChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhh
Q psy9209 124 KNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQE 192 (349)
Q Consensus 124 ~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 192 (349)
+.+..|+..-..+++.++....+++..+..+....++++|++.++.+....|++..+...+..+-....
T Consensus 289 ~~~~~a~~~~~~~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~~~~~~ 357 (372)
T KOG0546|consen 289 KGRGGARFRTNEALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELENVRQKKK 357 (372)
T ss_pred cCCCcceeccccccccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHHhhhHHH
Confidence 888888887777777777778888888888888888888888888888888888776665555444433
No 403
>KOG0128|consensus
Probab=88.48 E-value=22 Score=33.38 Aligned_cols=296 Identities=12% Similarity=0.046 Sum_probs=147.3
Q ss_pred HhhCcHHHHHHHHHHHHHhccccCCCCCcchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhchHHH-HHHHHHHHH-
Q psy9209 7 DKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEA-KSLLRSIAQ- 84 (349)
Q Consensus 7 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~-~~~l~~~~~- 84 (349)
...++++.-..+|.+++..+....... ......+...-..|...-..++-+.++...+... -+.++ ..-+.....
T Consensus 201 ~~~~d~k~~R~vf~ral~s~g~~~t~G--~~~we~~~E~e~~~l~n~~~~qv~a~~~~el~~~-~D~~~~~~~~~~~sk~ 277 (881)
T KOG0128|consen 201 KKSEDYKKERSVFERALRSLGSHITEG--AAIWEMYREFEVTYLCNVEQRQVIALFVRELKQP-LDEDTRGWDLSEQSKA 277 (881)
T ss_pred cccccchhhhHHHHHHHhhhhhhhccc--HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcc-chhhhhHHHHHHHHhc
Confidence 445778888888888886554443222 1112344455555555555566677777666543 11111 011111110
Q ss_pred --hcCCCcchHHHHH-------HHHHHHhhCcccHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Q psy9209 85 --KRQPDESSSQAVL-------YFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYE 155 (349)
Q Consensus 85 --~~~~~~~~~~A~~-------~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~ 155 (349)
......+++.|.+ .+++.++..|.....|..+-......|.+..-...+++++.-.+.+...|...+...-
T Consensus 278 h~~~~~~~~~~~a~~~l~~~~~~~e~~~q~~~~~~q~~~~yidfe~~~G~p~ri~l~~eR~~~E~~~~~~~wi~y~~~~d 357 (881)
T KOG0128|consen 278 HVYDVETKKLDDALKNLAKILFKFERLVQKEPIKDQEWMSYIDFEKKSGDPVRIQLIEERAVAEMVLDRALWIGYGVYLD 357 (881)
T ss_pred chHHHHhccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHhccccHHHHhhhhhhcc
Confidence 0001123444433 3444555555555667777778888899988888999999888888888887776443
Q ss_pred -HhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhCHH-HHHHHHHHHHccccccHHHHHHHHHHHH----------
Q psy9209 156 -ILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKIS-EAMKCYNKSRAIGDADGKALFKLAKLYD---------- 223 (349)
Q Consensus 156 -~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~A~~~~~~a~~~~~~~~~~~~~l~~~~~---------- 223 (349)
.++-.+.+...+.+++...|-....|-..-..+.+.+... .-...+.+++... ..+.+....+.
T Consensus 358 ~eLkv~~~~~~~~~ra~R~cp~tgdL~~rallAleR~re~~~vI~~~l~~~ls~~----~~l~~~~~~~rr~~~~~~~s~ 433 (881)
T KOG0128|consen 358 TELKVPQRGVSVHPRAVRSCPWTGDLWKRALLALERNREEITVIVQNLEKDLSMT----VELHNDYLAYRRRCTNIIDSQ 433 (881)
T ss_pred cccccccccccccchhhcCCchHHHHHHHHHHHHHhcCcchhhHHHHHHHHHHHH----HHHHHHHHHHHHhhcccchhh
Confidence 3444455566666666666655544433222222222111 1111222222110 00111111110
Q ss_pred ----hcCcHHHHHHHHHHHHhcccccCCCCCCcchHHHHHHHHHHHHH-hCCHHHHHHHHHHHHcccCChHH-HHHHHHH
Q psy9209 224 ----KLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLK-ANNLDTAYKCAQKCLQHEETAEE-AKSLLRS 297 (349)
Q Consensus 224 ----~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~a~~~~~~~~~-~~~~l~~ 297 (349)
....+..|...|.......-+ .....+...|.+... +++.+.++..++..+........ .|.....
T Consensus 434 ~~s~lr~~F~~A~~eLt~~~~~~~D--------t~~~~~q~wA~~E~sl~~nmd~~R~iWn~imty~~~~iag~Wle~~~ 505 (881)
T KOG0128|consen 434 DYSSLRAAFNHAWEELTELYGDQLD--------TRTEVLQLWAQVEASLLKNMDKAREIWNFIMTYGGGSIAGKWLEAIN 505 (881)
T ss_pred hHHHHHHHHHHHHHHHHHHhhhhhh--------hHHHHHHHHHHHHHHHhhchhhhhHhhhccccCCcchHHHHHHHHHh
Confidence 011233444444333332111 034444444554443 35666676666666555444333 5555555
Q ss_pred HHHHcCCCCCchhHHHHhhh
Q psy9209 298 IAQKRQPDESSSQPMECAVV 317 (349)
Q Consensus 298 ~~~~~~~~~~A~~~~~~a~~ 317 (349)
+-...|+...+..++++++.
T Consensus 506 lE~~~g~~~~~R~~~R~ay~ 525 (881)
T KOG0128|consen 506 LEREYGDGPSARKVLRKAYS 525 (881)
T ss_pred HHHHhCCchhHHHHHHHHHh
Confidence 55556666666665555543
No 404
>KOG0546|consensus
Probab=88.14 E-value=1.5 Score=36.15 Aligned_cols=107 Identities=14% Similarity=0.134 Sum_probs=73.8
Q ss_pred HHHHHhcCChHHHHHHHHHHHHhC-------------------cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCC
Q psy9209 117 GHEYMEMKNTNAAIQCYRQAIEIN-------------------NLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPND 177 (349)
Q Consensus 117 a~~~~~~~~~~~A~~~~~~a~~~~-------------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 177 (349)
+......++++.|..-+.+++..- +.-.....+++.+-...+.+..|+..-..++..++..
T Consensus 229 ~~~~~kk~~~~~a~~k~~k~~r~~~~~s~~~~~e~~~~~~~~~~~r~~~~~n~~~~~lk~~~~~~a~~~~~~~~~~~~s~ 308 (372)
T KOG0546|consen 229 GNKEFKKQRYREALAKYRKALRYLSEQSRDREKEQENRIPPLRELRFSIRRNLAAVGLKVKGRGGARFRTNEALRDERSK 308 (372)
T ss_pred chhhhhhccHhHHHHHHHHHhhhhcccccccccccccccccccccccccccchHHhcccccCCCcceeccccccccChhh
Confidence 344555566666666555554421 1112234456777777888888887777777777788
Q ss_pred hHHHHHHHHHHHHhhCHHHHHHHHHHHHccccccHHHHHHHHHHHH
Q psy9209 178 PRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKLAKLYD 223 (349)
Q Consensus 178 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~ 223 (349)
..+++..+..+....++++|++.++.+....|.+..+...+..+-.
T Consensus 309 tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~~~ 354 (372)
T KOG0546|consen 309 TKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELENVRQ 354 (372)
T ss_pred CcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHHhhh
Confidence 8888888888888888888888888888888887776665554433
No 405
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=88.11 E-value=9.9 Score=28.98 Aligned_cols=78 Identities=15% Similarity=0.098 Sum_probs=59.7
Q ss_pred HHhCCHHHHHHHHHHHHhc-CCCChHHHHHHHHHHHHhhCHHHHHHHHHHHHcccc----ccHHHHHHHHHHHHhcCcHH
Q psy9209 155 EILRLPYYGLYYYKQAHMV-RPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGD----ADGKALFKLAKLYDKLNETE 229 (349)
Q Consensus 155 ~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~----~~~~~~~~l~~~~~~~~~~~ 229 (349)
+..-.-+.|...|-++-.. .-++++..+.+|..|. ..+.++++..+.+++++.+ -+++++..|+.++..+|+++
T Consensus 117 Wsr~~d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e 195 (203)
T PF11207_consen 117 WSRFGDQEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYE 195 (203)
T ss_pred hhccCcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchh
Confidence 3343456777777666443 2256788888888776 6789999999999999843 36899999999999999999
Q ss_pred HHHH
Q psy9209 230 AAAD 233 (349)
Q Consensus 230 ~A~~ 233 (349)
.|.-
T Consensus 196 ~AYi 199 (203)
T PF11207_consen 196 QAYI 199 (203)
T ss_pred hhhh
Confidence 8853
No 406
>KOG4014|consensus
Probab=87.94 E-value=9.4 Score=28.55 Aligned_cols=187 Identities=14% Similarity=0.072 Sum_probs=116.8
Q ss_pred HHHHHHHHHHH-hcCCHHHHHHHHHHHhhhhhchHHHHHHHHHHHH--hcCCCcchHHHHHHHHHHHhhCcccHHHHHHH
Q psy9209 40 FAFKYLANHHL-KANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQ--KRQPDESSSQAVLYFQRALKLNPNYLGVWTLL 116 (349)
Q Consensus 40 ~~~~~l~~~~~-~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~--~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 116 (349)
.+...||..+. -+.+|++|..+|+.-...+.- +...+-++.... --...+++..|++.+..+-. .+.+.+...+
T Consensus 35 e~C~lLgdYlEgi~knF~~A~kv~K~nCden~y-~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~--~n~~~aC~~~ 111 (248)
T KOG4014|consen 35 ESCQLLGDYLEGIQKNFQAAVKVFKKNCDENSY-PKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACD--ANIPQACRYL 111 (248)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhcccccCC-cHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhc--cCCHHHHhhh
Confidence 56778887664 356788898888877654432 333333332211 11345689999999998876 5567888888
Q ss_pred HHHHHhc-----CC--hHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Q psy9209 117 GHEYMEM-----KN--TNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFE 189 (349)
Q Consensus 117 a~~~~~~-----~~--~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 189 (349)
|.++..- ++ .++|.+++.++..+. +..+.+.|...|....+ + +....|..... ...+..+.
T Consensus 112 gLl~~~g~~~r~~dpd~~Ka~~y~traCdl~--~~~aCf~LS~m~~~g~~--k-------~~t~ap~~g~p-~~~~~~~~ 179 (248)
T KOG4014|consen 112 GLLHWNGEKDRKADPDSEKAERYMTRACDLE--DGEACFLLSTMYMGGKE--K-------FKTNAPGEGKP-LDRAELGS 179 (248)
T ss_pred hhhhccCcCCccCCCCcHHHHHHHHHhccCC--CchHHHHHHHHHhccch--h-------hcccCCCCCCC-cchhhhhh
Confidence 8877642 23 678999999998764 56667777766654321 1 11113311111 12344455
Q ss_pred HhhCHHHHHHHHHHHHccccccHHHHHHHHHHHHhc----CcHHHHHHHHHHHHhccc
Q psy9209 190 KQEKISEAMKCYNKSRAIGDADGKALFKLAKLYDKL----NETEAAADLFMEFVSKLD 243 (349)
Q Consensus 190 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~----~~~~~A~~~~~~~~~~~~ 243 (349)
-..+.++|.++--++-++. ++.+..++.+.|..- ++.++|..+-.++.++..
T Consensus 180 ~~kDMdka~qfa~kACel~--~~~aCAN~SrMyklGDGv~Kde~~Aekyk~rA~e~~~ 235 (248)
T KOG4014|consen 180 LSKDMDKALQFAIKACELD--IPQACANVSRMYKLGDGVPKDEDQAEKYKDRAKEIME 235 (248)
T ss_pred hhHhHHHHHHHHHHHHhcC--ChHHHhhHHHHHHccCCCCccHHHHHHHHHHHHHHHH
Confidence 6678899999988888775 455666666655432 356777777777776543
No 407
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=87.51 E-value=5.2 Score=28.59 Aligned_cols=53 Identities=15% Similarity=0.021 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHcccCChHHHHHHHHHHHHHcCCCCC
Q psy9209 255 FFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDES 307 (349)
Q Consensus 255 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~ 307 (349)
.+.....+.-.+..|++.-|.++.+.++..+|++..++...+.++..+|...+
T Consensus 70 ~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~~~ 122 (141)
T PF14863_consen 70 ADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQSE 122 (141)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-S
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhcc
Confidence 56667778888999999999999999999999999999999999988875543
No 408
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=87.24 E-value=9 Score=32.72 Aligned_cols=128 Identities=16% Similarity=-0.001 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhcCCCcchHHHHHHHHHHHhhCcccHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCcccHHHHHHHHHHH
Q psy9209 75 AKSLLRSIAQKRQPDESSSQAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTY 154 (349)
Q Consensus 75 ~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~ 154 (349)
+...+..+...-...+..-+|+.+++.++..+|.+......+..+|...|-.+.|...|...--..-.....-+.+..-.
T Consensus 182 a~~~Ll~~~~~~~~~~~l~~Ai~lLE~~l~~s~~n~~~~LlLvrlY~~LG~~~~A~~~~~~L~iK~IQ~DTL~h~~~~r~ 261 (365)
T PF09797_consen 182 AAHSLLDLYSKTKDSEYLLQAIALLEHALKKSPHNYQLKLLLVRLYSLLGAGSLALEHYESLDIKNIQLDTLGHLILDRL 261 (365)
T ss_pred HHHHHHHHhhccCCHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHhcChHHHHHHHhHHHHHHHH
Q ss_pred HHhCCHHHHH-HHHHHHHhcCCCChHHHHHHHHHHHHhhCHHHHHHHHH
Q psy9209 155 EILRLPYYGL-YYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYN 202 (349)
Q Consensus 155 ~~~~~~~~A~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 202 (349)
...|....+. ..+..++.....+..-.......-++.|.|.+..+..+
T Consensus 262 ~~~~~~~~~~~~~~~~~~~fy~~~~~~~~e~i~~af~~gsysKi~ef~~ 310 (365)
T PF09797_consen 262 STLGPFKSAPENLLENALKFYDNSEKETPEFIIKAFENGSYSKIEEFIE 310 (365)
T ss_pred hccCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHH
No 409
>KOG3807|consensus
Probab=87.17 E-value=16 Score=30.27 Aligned_cols=185 Identities=14% Similarity=0.021 Sum_probs=93.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhhhhchHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhCcccHHHHHHHHHHHHhc
Q psy9209 44 YLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDESSSQAVLYFQRALKLNPNYLGVWTLLGHEYMEM 123 (349)
Q Consensus 44 ~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~ 123 (349)
.+.....+..+..+-++....+++++|.-..++.+++.- ...-..+|.+.++++++... ..+.........
T Consensus 189 eIMQ~AWRERnp~~RI~~A~~ALeIN~eCA~AyvLLAEE-----Ea~Ti~~AE~l~k~ALka~e----~~yr~sqq~qh~ 259 (556)
T KOG3807|consen 189 EIMQKAWRERNPPARIKAAYQALEINNECATAYVLLAEE-----EATTIVDAERLFKQALKAGE----TIYRQSQQCQHQ 259 (556)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHhcCchhhhHHHhhhhh-----hhhhHHHHHHHHHHHHHHHH----HHHhhHHHHhhh
Confidence 344444555566666666677777777766665444321 11245566666766665422 112222222222
Q ss_pred CChHHHHHHHHHHHHhCccc--HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCh--HHHHHHHHHHHHhhCHHHHHH
Q psy9209 124 KNTNAAIQCYRQAIEINNLD--YRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDP--RMLTALGEAFEKQEKISEAMK 199 (349)
Q Consensus 124 ~~~~~A~~~~~~a~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~A~~ 199 (349)
|...+|.. +. ..+ ......++.+-.++|+..+|++.++...+..|-.. .++-++-..+....-|.+...
T Consensus 260 ~~~~da~~------rR-Dtnvl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYADvqa 332 (556)
T KOG3807|consen 260 SPQHEAQL------RR-DTNVLVYIKRRLAMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYADVQA 332 (556)
T ss_pred ccchhhhh------hc-ccchhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222211 11 112 22334678888888888888888888777666322 233455555555555544444
Q ss_pred HHHHHHcc-ccccHHHHHHHHHH-------------HHhcCc---HHHHHHHHHHHHhcccc
Q psy9209 200 CYNKSRAI-GDADGKALFKLAKL-------------YDKLNE---TEAAADLFMEFVSKLDT 244 (349)
Q Consensus 200 ~~~~a~~~-~~~~~~~~~~l~~~-------------~~~~~~---~~~A~~~~~~~~~~~~~ 244 (349)
.+-+.-++ -|..+.+.+.-+.+ ..+.|- -..|++...++++.+|.
T Consensus 333 vLakYDdislPkSA~icYTaALLK~RAVa~kFspd~asrRGLS~AE~~AvEAihRAvEFNPH 394 (556)
T KOG3807|consen 333 VLAKYDDISLPKSAAICYTAALLKTRAVSEKFSPETASRRGLSTAEINAVEAIHRAVEFNPH 394 (556)
T ss_pred HHHhhccccCcchHHHHHHHHHHHHHHHHhhcCchhhhhccccHHHHHHHHHHHHHhhcCCC
Confidence 44333332 23222222211111 111121 23577888889998887
No 410
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=87.09 E-value=1.3 Score=21.49 Aligned_cols=27 Identities=11% Similarity=0.172 Sum_probs=20.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhh
Q psy9209 41 AFKYLANHHLKANNLDTAYKCAQKCLQ 67 (349)
Q Consensus 41 ~~~~l~~~~~~~~~~~~A~~~~~~~l~ 67 (349)
+|..+-..|.+.|++++|...+++..+
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~ 28 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRE 28 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhH
Confidence 366677788888888888888877654
No 411
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=86.92 E-value=16 Score=30.24 Aligned_cols=166 Identities=12% Similarity=0.044 Sum_probs=110.3
Q ss_pred hHHHHHHHHHHHHhCcccHHHHHHHHHHHHHh--------------------------CCHHHHHHHHHHHHhcCCCCh-
Q psy9209 126 TNAAIQCYRQAIEINNLDYRAWYGLGQTYEIL--------------------------RLPYYGLYYYKQAHMVRPNDP- 178 (349)
Q Consensus 126 ~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~--------------------------~~~~~A~~~~~~~~~~~~~~~- 178 (349)
-++|+.+-.-...+-|..++++-.++.+.... +-.+++...+.++.....--+
T Consensus 212 c~EairLgRll~~L~p~EPE~~GL~ALmll~~sR~~AR~~~~G~~vlL~dQDr~lW~r~lI~eg~all~rA~~~~~pGPY 291 (415)
T COG4941 212 CDEAIRLGRLLARLLPGEPEALGLLALMLLQESRRPARFDADGEPVLLEDQDRSLWDRALIDEGLALLDRALASRRPGPY 291 (415)
T ss_pred HHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhhhhccCCCCCeeeccccchhhhhHHHHHHHHHHHHHHHHcCCCChH
Confidence 46778777777888898888887777666532 224667777888776643222
Q ss_pred HHHHHHHHHHHH-----hhCHHHHHHHHHHHHccccccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCCCCCcc
Q psy9209 179 RMLTALGEAFEK-----QEKISEAMKCYNKSRAIGDADGKALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTC 253 (349)
Q Consensus 179 ~~~~~l~~~~~~-----~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 253 (349)
...-.++.++.. .-+|..-..+|.-.....| +|.+-.+.+.......-...++...+..... |. -..
T Consensus 292 qlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~~ap-SPvV~LNRAVAla~~~Gp~agLa~ve~L~~~-~~------L~g 363 (415)
T COG4941 292 QLQAAIAALHARARRAEDTDWPAIDALYDALEQAAP-SPVVTLNRAVALAMREGPAAGLAMVEALLAR-PR------LDG 363 (415)
T ss_pred HHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHhCC-CCeEeehHHHHHHHhhhHHhHHHHHHHhhcc-cc------ccc
Confidence 222233333332 2356666677777666666 5566666666666665667777776655543 22 111
Q ss_pred hHHHHHHHHHHHHHhCCHHHHHHHHHHHHcccCChHHHHHHHHHHH
Q psy9209 254 GFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIA 299 (349)
Q Consensus 254 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~ 299 (349)
....+-..|.++.+.|+.++|...|++++.+.++..+..+.....-
T Consensus 364 y~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~aer~~l~~r~~ 409 (415)
T COG4941 364 YHLYHAARADLLARLGRVEEARAAYDRAIALARNAAERAFLRQRLD 409 (415)
T ss_pred ccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCChHHHHHHHHHHH
Confidence 4556677899999999999999999999999988877766665543
No 412
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=86.62 E-value=22 Score=31.44 Aligned_cols=205 Identities=14% Similarity=0.007 Sum_probs=132.6
Q ss_pred cHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Q psy9209 109 YLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAF 188 (349)
Q Consensus 109 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 188 (349)
+-..+..+-.++.+...+.-....+.+++.... +-.+++.++.+|... ..++-...+++..+.+-++...-..++..|
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e-~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa~~y 142 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGE-SKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELADKY 142 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhcc-hHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 334455555566666666677788888888754 567888999999988 667778889999999888888888899888
Q ss_pred HHhhCHHHHHHHHHHHHccc-c--cc---HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCCCCCcchHHH-HHHH
Q psy9209 189 EKQEKISEAMKCYNKSRAIG-D--AD---GKALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFA-FKYL 261 (349)
Q Consensus 189 ~~~~~~~~A~~~~~~a~~~~-~--~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l 261 (349)
.+ ++-.++..+|.+++... | .+ .+.|..+-. .--.+.+.-.....+.-..... ....+ +..+
T Consensus 143 Ek-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~--~i~dD~D~fl~l~~kiqt~lg~--------~~~~Vl~qdv 211 (711)
T COG1747 143 EK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPE--LIGDDKDFFLRLQKKIQTKLGE--------GRGSVLMQDV 211 (711)
T ss_pred HH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHH--hccccHHHHHHHHHHHHHhhcc--------chHHHHHHHH
Confidence 76 88999999999998652 2 11 223333321 1122333333333333222211 12233 3333
Q ss_pred HHHHHHhCCHHHHHHHHHHHHcccCChHHHHHHHHHHHHH--------------------cCCCCCchhHHHHhhhcCCC
Q psy9209 262 ANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQK--------------------RQPDESSSQPMECAVVLDPV 321 (349)
Q Consensus 262 ~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~--------------------~~~~~~A~~~~~~a~~~~p~ 321 (349)
-.-|....++.+|++.+...++.+..+..++..+-.-++. -.++-+++.-|++.+..+..
T Consensus 212 ~~~Ys~~eN~~eai~Ilk~il~~d~k~~~ar~~~i~~lRd~y~~~~~~e~yl~~s~i~~~~rnf~~~l~dFek~m~f~eG 291 (711)
T COG1747 212 YKKYSENENWTEAIRILKHILEHDEKDVWARKEIIENLRDKYRGHSQLEEYLKISNISQSGRNFFEALNDFEKLMHFDEG 291 (711)
T ss_pred HHHhccccCHHHHHHHHHHHhhhcchhhhHHHHHHHHHHHHhccchhHHHHHHhcchhhccccHHHHHHHHHHHheeccC
Confidence 3556667899999999999999988777777665544443 23445666677777766666
Q ss_pred CCCcc
Q psy9209 322 PPSTR 326 (349)
Q Consensus 322 ~~~~~ 326 (349)
+-..+
T Consensus 292 nFVfH 296 (711)
T COG1747 292 NFVFH 296 (711)
T ss_pred ceEEe
Confidence 54433
No 413
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=86.51 E-value=1.5 Score=21.25 Aligned_cols=24 Identities=17% Similarity=0.250 Sum_probs=11.8
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHH
Q psy9209 114 TLLGHEYMEMKNTNAAIQCYRQAI 137 (349)
Q Consensus 114 ~~la~~~~~~~~~~~A~~~~~~a~ 137 (349)
..+-..|.+.|++++|.+.|++..
T Consensus 4 ~~li~~~~~~~~~~~a~~~~~~M~ 27 (31)
T PF01535_consen 4 NSLISGYCKMGQFEEALEVFDEMR 27 (31)
T ss_pred HHHHHHHHccchHHHHHHHHHHHh
Confidence 344444555555555555555443
No 414
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=86.40 E-value=1.8 Score=36.92 Aligned_cols=69 Identities=13% Similarity=0.092 Sum_probs=47.4
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCCCCCcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHc
Q psy9209 214 ALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQ 283 (349)
Q Consensus 214 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 283 (349)
+...+.+++.-+|+|..|++.++.. +++...-.....+-....++.+|-+|..+++|.+|++.|...+-
T Consensus 124 SligLlRvh~LLGDY~~Alk~l~~i-dl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~ 192 (404)
T PF10255_consen 124 SLIGLLRVHCLLGDYYQALKVLENI-DLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL 192 (404)
T ss_pred HHHHHHHHHHhccCHHHHHHHhhcc-CcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445667777888888888776543 11111001122334678899999999999999999999998753
No 415
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=85.62 E-value=24 Score=30.84 Aligned_cols=27 Identities=15% Similarity=0.101 Sum_probs=23.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHh
Q psy9209 113 WTLLGHEYMEMKNTNAAIQCYRQAIEI 139 (349)
Q Consensus 113 ~~~la~~~~~~~~~~~A~~~~~~a~~~ 139 (349)
...+|......|+|+.|...|+.+.+-
T Consensus 211 ~R~LAD~aFml~Dy~~A~s~Y~~~k~D 237 (414)
T PF12739_consen 211 MRRLADLAFMLRDYELAYSTYRLLKKD 237 (414)
T ss_pred HHHHHHHHHHHccHHHHHHHHHHHHHH
Confidence 467899999999999999999988774
No 416
>KOG1920|consensus
Probab=85.58 E-value=39 Score=33.31 Aligned_cols=25 Identities=20% Similarity=0.270 Sum_probs=17.4
Q ss_pred HHHHHHHHhcCcHHHHHHHHHHHHh
Q psy9209 216 FKLAKLYDKLNETEAAADLFMEFVS 240 (349)
Q Consensus 216 ~~l~~~~~~~~~~~~A~~~~~~~~~ 240 (349)
..|+.-+..++++-+|-+.....+.
T Consensus 1003 ~~L~s~L~e~~kh~eAa~il~e~~s 1027 (1265)
T KOG1920|consen 1003 EELVSRLVEQRKHYEAAKILLEYLS 1027 (1265)
T ss_pred HHHHHHHHHcccchhHHHHHHHHhc
Confidence 4566667777777777777766655
No 417
>KOG4279|consensus
Probab=85.14 E-value=11 Score=34.94 Aligned_cols=187 Identities=15% Similarity=0.100 Sum_probs=107.8
Q ss_pred cHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCcccH------HHHHHHHHHHH---HhCCHHHHHHHHHHHHhcC-CCCh
Q psy9209 109 YLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDY------RAWYGLGQTYE---ILRLPYYGLYYYKQAHMVR-PNDP 178 (349)
Q Consensus 109 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~------~~~~~l~~~~~---~~~~~~~A~~~~~~~~~~~-~~~~ 178 (349)
.+++..++-..|....+|+.-+++.+..-.+ |+.. .+.+..+-++. +-|+-++|+...-.+++.. |-.+
T Consensus 200 ~~d~V~nlmlSyRDvQdY~amirLVe~Lk~i-P~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~eg~vap 278 (1226)
T KOG4279|consen 200 HPDTVSNLMLSYRDVQDYDAMIRLVEDLKRI-PDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKEGPVAP 278 (1226)
T ss_pred CHHHHHHHHhhhccccchHHHHHHHHHHHhC-cchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhcCCCCC
Confidence 4667788888899999998888877665443 4221 11122222222 3577888888888877753 4456
Q ss_pred HHHHHHHHHHHH---------hhCHHHHHHHHHHHHccccccHHHHHHHHHHHHhcCc-HHHHHHHHHHHHhcccccCCC
Q psy9209 179 RMLTALGEAFEK---------QEKISEAMKCYNKSRAIGDADGKALFKLAKLYDKLNE-TEAAADLFMEFVSKLDTFAAP 248 (349)
Q Consensus 179 ~~~~~l~~~~~~---------~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~~~~~~~~~~~~ 248 (349)
+.++.-|++|.. .+..+.|+.+|+++++..|.. ..=.+++.++...|+ ++...+.-.-.+.++.-.+ .
T Consensus 279 Dm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFeveP~~-~sGIN~atLL~aaG~~Fens~Elq~IgmkLn~Llg-r 356 (1226)
T KOG4279|consen 279 DMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEVEPLE-YSGINLATLLRAAGEHFENSLELQQIGMKLNSLLG-R 356 (1226)
T ss_pred ceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhccCchh-hccccHHHHHHHhhhhccchHHHHHHHHHHHHHhh-c
Confidence 677777777753 466788999999999998853 222344555444443 3333333222233221100 0
Q ss_pred CCCcchHHHHHHHHHHH---HHhCCHHHHHHHHHHHHcccCChHHHHHHHHHH
Q psy9209 249 PDKTCGFFAFKYLANHH---LKANNLDTAYKCAQKCLQHEETAEEAKSLLRSI 298 (349)
Q Consensus 249 ~~~~~~~~~~~~l~~~~---~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~ 298 (349)
...-.....|+..|..+ .-.+++.+|+..-++..++.|...-....++.+
T Consensus 357 KG~leklq~YWdV~~y~~asVLAnd~~kaiqAae~mfKLk~P~WYLkS~meni 409 (1226)
T KOG4279|consen 357 KGALEKLQEYWDVATYFEASVLANDYQKAIQAAEMMFKLKPPVWYLKSTMENI 409 (1226)
T ss_pred cchHHHHHHHHhHHHhhhhhhhccCHHHHHHHHHHHhccCCceehHHHHHHHH
Confidence 01111223333333332 224789999999999998887654444444444
No 418
>KOG0686|consensus
Probab=85.10 E-value=16 Score=31.14 Aligned_cols=27 Identities=30% Similarity=0.507 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHh
Q psy9209 40 FAFKYLANHHLKANNLDTAYKCAQKCL 66 (349)
Q Consensus 40 ~~~~~l~~~~~~~~~~~~A~~~~~~~l 66 (349)
.++..+|..|...|+++.|+..|.++-
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~R 177 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRAR 177 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhh
Confidence 355566666666666666666666643
No 419
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=83.26 E-value=28 Score=29.76 Aligned_cols=59 Identities=8% Similarity=-0.073 Sum_probs=41.5
Q ss_pred hhhhHHhhCcHHHHHHHHHHHHHhccccCCCCCcchhHHHHHHHHHHH--HhcCCHHHHHHHHHH
Q psy9209 2 RNKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHH--LKANNLDTAYKCAQK 64 (349)
Q Consensus 2 ~a~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~A~~~~~~ 64 (349)
+++.+.+.++|..|..+|.++..+..+ ++....+..+..+..+| +..-++++|.+.+++
T Consensus 136 ~~r~l~n~~dy~aA~~~~~~L~~r~l~----~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~~ 196 (380)
T TIGR02710 136 YARRAINAFDYLFAHARLETLLRRLLS----AVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLND 196 (380)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhcccC----hhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHhh
Confidence 456778999999999999999865322 22222334555555554 667789999999986
No 420
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=82.96 E-value=3.1 Score=20.59 Aligned_cols=28 Identities=18% Similarity=0.285 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHcc
Q psy9209 257 AFKYLANHHLKANNLDTAYKCAQKCLQH 284 (349)
Q Consensus 257 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 284 (349)
.|..+-..|.+.|++++|.+.|.+..+.
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~ 29 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLER 29 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 3566778888999999999999887643
No 421
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=82.74 E-value=13 Score=25.65 Aligned_cols=59 Identities=20% Similarity=0.237 Sum_probs=37.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHhCcc---------------cHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q psy9209 113 WTLLGHEYMEMKNTNAAIQCYRQAIEINNL---------------DYRAWYGLGQTYEILRLPYYGLYYYKQAH 171 (349)
Q Consensus 113 ~~~la~~~~~~~~~~~A~~~~~~a~~~~~~---------------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 171 (349)
+..+|....+.+++-.++-.|++|+.+..+ ......+||..+...|+.+-.+++++-+-
T Consensus 4 htllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlAS 77 (140)
T PF10952_consen 4 HTLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLAS 77 (140)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHH
Confidence 455666777777777777777777664221 12334567777777777777777765543
No 422
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=82.44 E-value=15 Score=26.08 Aligned_cols=45 Identities=18% Similarity=0.190 Sum_probs=22.4
Q ss_pred hCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhCHHHHHHHHH
Q psy9209 157 LRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYN 202 (349)
Q Consensus 157 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 202 (349)
.+.+...+.+++.++..++.++..+..+..+|.+. +..+.+.+++
T Consensus 20 ~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~-~~~~ll~~l~ 64 (140)
T smart00299 20 RNLLEELIPYLESALKLNSENPALQTKLIELYAKY-DPQKEIERLD 64 (140)
T ss_pred CCcHHHHHHHHHHHHccCccchhHHHHHHHHHHHH-CHHHHHHHHH
Confidence 34555555555555555555555555555555433 2333444443
No 423
>KOG2063|consensus
Probab=82.14 E-value=50 Score=31.84 Aligned_cols=171 Identities=12% Similarity=0.004 Sum_probs=99.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHhC----cccHHHHHHHHHHHHHhCCH--HHHHHHHHHHHhcCCCChH-------
Q psy9209 113 WTLLGHEYMEMKNTNAAIQCYRQAIEIN----NLDYRAWYGLGQTYEILRLP--YYGLYYYKQAHMVRPNDPR------- 179 (349)
Q Consensus 113 ~~~la~~~~~~~~~~~A~~~~~~a~~~~----~~~~~~~~~l~~~~~~~~~~--~~A~~~~~~~~~~~~~~~~------- 179 (349)
+..++..|...|+.++|++.+.+..... +.....+-.+-..+...+.. +-..++-.-.++.+|....
T Consensus 507 y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~~~ 586 (877)
T KOG2063|consen 507 YRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTSED 586 (877)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeeccC
Confidence 5778899999999999999999988733 22333444444445555554 5666666666666654321
Q ss_pred ------HHHHHHHHHHHhhCHHHHHHHHHHHHccccc-cHHHHHHHHHHHHhc--------CcHHHHHHH--HHHHHhcc
Q psy9209 180 ------MLTALGEAFEKQEKISEAMKCYNKSRAIGDA-DGKALFKLAKLYDKL--------NETEAAADL--FMEFVSKL 242 (349)
Q Consensus 180 ------~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~--------~~~~~A~~~--~~~~~~~~ 242 (349)
.-.....-+......+-++.+++.++..+.. ....+..++..|... ++-+++.+. .++....-
T Consensus 587 ~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e~v~~~~~~~~kg~e~~E~~~rekl~~~l 666 (877)
T KOG2063|consen 587 KQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLEKVLEQASTDGKGEEAPETTVREKLLDFL 666 (877)
T ss_pred hhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHHHHhhccCchhccccchhhhHHHHHHHHh
Confidence 0011222345667788899999999887654 334444444444321 222233333 22222221
Q ss_pred cccC-----CCCCCcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHc
Q psy9209 243 DTFA-----APPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQ 283 (349)
Q Consensus 243 ~~~~-----~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 283 (349)
+... ...........|...+.++.+.|+.++|+..+-..+.
T Consensus 667 ~~s~~Y~p~~~L~~~~~~~l~ee~aill~rl~khe~aL~Iyv~~L~ 712 (877)
T KOG2063|consen 667 ESSDLYDPQLLLERLNGDELYEERAILLGRLGKHEEALHIYVHELD 712 (877)
T ss_pred hhhcccCcchhhhhccchhHHHHHHHHHhhhhhHHHHHHHHHHHhc
Confidence 1100 0011111356677788888899999999888776655
No 424
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=82.06 E-value=9 Score=27.41 Aligned_cols=48 Identities=8% Similarity=-0.110 Sum_probs=29.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCC
Q psy9209 112 VWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRL 159 (349)
Q Consensus 112 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~ 159 (349)
.....+......|++.-|.++...++..+|++..+....+.++..+|.
T Consensus 72 ~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~ 119 (141)
T PF14863_consen 72 KVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGY 119 (141)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHH
Confidence 344555556666777777777777777777776666666666665553
No 425
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=81.95 E-value=6.5 Score=29.96 Aligned_cols=46 Identities=11% Similarity=0.009 Sum_probs=26.4
Q ss_pred HHHHHHHHHccccccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhccc
Q psy9209 197 AMKCYNKSRAIGDADGKALFKLAKLYDKLNETEAAADLFMEFVSKLD 243 (349)
Q Consensus 197 A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 243 (349)
.++..++.+...| ++.++..++.++...|+.++|....+++....|
T Consensus 130 ~~~~a~~~l~~~P-~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 130 YIEWAERLLRRRP-DPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred HHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 3344444444455 455566666666666666666666666666555
No 426
>KOG2062|consensus
Probab=80.99 E-value=48 Score=30.94 Aligned_cols=255 Identities=11% Similarity=-0.027 Sum_probs=120.8
Q ss_pred hhCcHHHHHHHHHHHHHhccccCCCCCcchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhchHHHHHHHHHHHHhcC
Q psy9209 8 KLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQ 87 (349)
Q Consensus 8 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~ 87 (349)
..|+..+|.+++.-.+ |..........-.-+++.+|.++...|+- ..+++...++...+....+-....++ +.
T Consensus 369 H~G~~~~~~~ll~pYL---P~~~~~~s~y~EGGalyAlGLIhA~hG~~--~~~yL~~~Lk~~~~e~v~hG~cLGlG--La 441 (929)
T KOG2062|consen 369 HRGHENQAMKLLAPYL---PKEAGEGSGYKEGGALYALGLIHANHGRG--ITDYLLQQLKTAENEVVRHGACLGLG--LA 441 (929)
T ss_pred eccccchHHHHhhhhC---CccCCCCCCccccchhhhhhccccCcCcc--HHHHHHHHHHhccchhhhhhhhhhcc--ch
Confidence 3577778887776655 33211111111113688899888877764 78888888776554433322211122 22
Q ss_pred CCcchHHHHHHHHHHHh---hCccc--HHHHHHHHHHHHhcCChHHHHH-HHHHHHHhCcccHHHHHHHHHHHHHhCCHH
Q psy9209 88 PDESSSQAVLYFQRALK---LNPNY--LGVWTLLGHEYMEMKNTNAAIQ-CYRQAIEINNLDYRAWYGLGQTYEILRLPY 161 (349)
Q Consensus 88 ~~~~~~~A~~~~~~~~~---~~~~~--~~~~~~la~~~~~~~~~~~A~~-~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~ 161 (349)
.+|.- -.+.|++.-. .+..- ..+-..+|.+....++. +|++ .+.-+-+..-....--..+|..+...|+-+
T Consensus 442 ~mGSa--~~eiYe~lKevLy~D~AvsGEAAgi~MGl~mlGt~~~-eaiedm~~Ya~ETQHeki~RGl~vGiaL~~ygrqe 518 (929)
T KOG2062|consen 442 GMGSA--NEEIYEKLKEVLYNDSAVSGEAAGIAMGLLMLGTANQ-EAIEDMLTYAQETQHEKIIRGLAVGIALVVYGRQE 518 (929)
T ss_pred hcccc--cHHHHHHHHHHHhccchhhhhHHHHhhhhHhhCcCcH-HHHHHHHHHhhhhhHHHHHHHHHHhHHHHHhhhhh
Confidence 12322 2333443332 22221 12335566665555543 3333 333333222222222234556677778888
Q ss_pred HHHHHHHHHHhcCCCCh----HHHHHHHHHHHHhhCHHHHHHHHHHHHccccccHHHHHHHHHHHHhcCcHHHHHHHHHH
Q psy9209 162 YGLYYYKQAHMVRPNDP----RMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKLAKLYDKLNETEAAADLFME 237 (349)
Q Consensus 162 ~A~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 237 (349)
+|..+.++++.-. ++ .-.+.++..|...|+..--...+.-++.-..++..-..-+|.-+....+++.-.....-
T Consensus 519 ~Ad~lI~el~~dk--dpilR~~Gm~t~alAy~GTgnnkair~lLh~aVsD~nDDVrRaAVialGFVl~~dp~~~~s~V~l 596 (929)
T KOG2062|consen 519 DADPLIKELLRDK--DPILRYGGMYTLALAYVGTGNNKAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDPEQLPSTVSL 596 (929)
T ss_pred hhHHHHHHHhcCC--chhhhhhhHHHHHHHHhccCchhhHHHhhcccccccchHHHHHHHHHheeeEecChhhchHHHHH
Confidence 8888888887543 33 23456677777777754443333333322222222222222222233444444443333
Q ss_pred HHhcc-cccCCCCCCcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHc
Q psy9209 238 FVSKL-DTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQ 283 (349)
Q Consensus 238 ~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 283 (349)
..+.. |. -..-+-..||.++.-.|. .+|+..++-...
T Consensus 597 Lses~N~H--------VRyGaA~ALGIaCAGtG~-~eAi~lLepl~~ 634 (929)
T KOG2062|consen 597 LSESYNPH--------VRYGAAMALGIACAGTGL-KEAINLLEPLTS 634 (929)
T ss_pred HhhhcChh--------hhhhHHHHHhhhhcCCCc-HHHHHHHhhhhc
Confidence 22211 11 022333445555555554 356666665544
No 427
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=80.93 E-value=25 Score=27.63 Aligned_cols=19 Identities=5% Similarity=0.053 Sum_probs=16.5
Q ss_pred HhhCcHHHHHHHHHHHHHh
Q psy9209 7 DKLNETEAAADLFMEFVSK 25 (349)
Q Consensus 7 ~~~g~~~~A~~~~~~~~~~ 25 (349)
...|+++.|+++..-+|+.
T Consensus 94 ~D~Gd~~~AL~ia~yAI~~ 112 (230)
T PHA02537 94 FDIGDFDGALEIAEYALEH 112 (230)
T ss_pred eeccCHHHHHHHHHHHHHc
Confidence 4579999999999999964
No 428
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=80.11 E-value=19 Score=25.61 Aligned_cols=33 Identities=27% Similarity=0.304 Sum_probs=17.6
Q ss_pred cchHHHHHHHHHHHhhCcccHHHHHHHHHHHHh
Q psy9209 90 ESSSQAVLYFQRALKLNPNYLGVWTLLGHEYME 122 (349)
Q Consensus 90 ~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~ 122 (349)
+.....+.+++.++..++.++..+..+..+|..
T Consensus 21 ~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~ 53 (140)
T smart00299 21 NLLEELIPYLESALKLNSENPALQTKLIELYAK 53 (140)
T ss_pred CcHHHHHHHHHHHHccCccchhHHHHHHHHHHH
Confidence 445555555555555555445555555555543
No 429
>KOG0687|consensus
Probab=79.65 E-value=34 Score=28.37 Aligned_cols=101 Identities=14% Similarity=0.061 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC------ChHHHHHHHHHHHHhhCHHHHHHHHHHHHcccccc---HHH
Q psy9209 144 YRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPN------DPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDAD---GKA 214 (349)
Q Consensus 144 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~ 214 (349)
.+++.+.+..|.+.|+-+.|++.+.+..+..-. -.-....+|.+|....-..+.++-.+..++...+. -..
T Consensus 104 ~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRl 183 (393)
T KOG0687|consen 104 REAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRL 183 (393)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhH
Confidence 567777888888888888887777766553211 11233455666655444444444444444432211 112
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHhcccc
Q psy9209 215 LFKLAKLYDKLNETEAAADLFMEFVSKLDT 244 (349)
Q Consensus 215 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 244 (349)
...-|.......++.+|...|-.++.....
T Consensus 184 KvY~Gly~msvR~Fk~Aa~Lfld~vsTFtS 213 (393)
T KOG0687|consen 184 KVYQGLYCMSVRNFKEAADLFLDSVSTFTS 213 (393)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHcccccc
Confidence 223345555666677777776666554443
No 430
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=79.50 E-value=27 Score=27.16 Aligned_cols=59 Identities=10% Similarity=-0.041 Sum_probs=41.6
Q ss_pred HHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhCHHHHHHHHHHHHcccccc
Q psy9209 153 TYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDAD 211 (349)
Q Consensus 153 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~ 211 (349)
-+.+.+...+|+...+.-++..|.+......+-.++.-.|+|++|..-++-+-.+.|+.
T Consensus 10 eLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~ 68 (273)
T COG4455 10 ELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQD 68 (273)
T ss_pred HHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCccc
Confidence 44556667777777777777777777777777777777777777777777777666653
No 431
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=79.38 E-value=8.3 Score=29.37 Aligned_cols=50 Identities=8% Similarity=-0.037 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHhcccccCCCCCCcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHcccCC
Q psy9209 228 TEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEET 287 (349)
Q Consensus 228 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 287 (349)
.+..++..++.+...|. +.++..++.++...|+.++|....+++..+.|.
T Consensus 127 l~~~~~~a~~~l~~~P~----------~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP~ 176 (193)
T PF11846_consen 127 LEAYIEWAERLLRRRPD----------PNVYQRYALALALLGDPEEARQWLARARRLYPA 176 (193)
T ss_pred HHHHHHHHHHHHHhCCC----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence 34455666777777775 899999999999999999999999999999993
No 432
>PF13226 DUF4034: Domain of unknown function (DUF4034)
Probab=79.22 E-value=33 Score=27.92 Aligned_cols=137 Identities=9% Similarity=-0.013 Sum_probs=66.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhhhhc--hHHHHHHHHHHHHhcCCCcc----hHHHHHHHHHHHhhCcccHHHHHHHHHH
Q psy9209 46 ANHHLKANNLDTAYKCAQKCLQHEET--AEEAKSLLRSIAQKRQPDES----SSQAVLYFQRALKLNPNYLGVWTLLGHE 119 (349)
Q Consensus 46 ~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~~l~~~~~~~~~~~~----~~~A~~~~~~~~~~~~~~~~~~~~la~~ 119 (349)
...++..++|++=...+.+..+...+ ..+..+.............. ...-...++.-++..|++..++..+|..
T Consensus 7 ir~LL~~~~f~eLd~~l~~~~~~~~~s~~~e~~Y~~~~~~~~l~D~~~~~~~~~~~~~~LkaWv~a~P~Sy~A~La~g~~ 86 (277)
T PF13226_consen 7 IRELLQARDFAELDALLARLLQAWLQSRDGEQRYFRAWMSSTLFDMDSVVDAWQARLAVLKAWVAACPKSYHAHLAMGMY 86 (277)
T ss_pred HHHHHHhCcHHHHHHHHHHHHHhhhhccCccchHHHHHhhccccCcchhhhHHHhHHHHHHHHHHHCCCChHHHHHHHHH
Confidence 45567788888888888777644222 11111111111111111111 1235666777788899988888888877
Q ss_pred HHhcCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhCH
Q psy9209 120 YMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKI 194 (349)
Q Consensus 120 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 194 (349)
+....=--.....- +.-...-|.... .-.+.|...+.+++.++|....+...+-.+-...|.+
T Consensus 87 ~~~~Aw~~RG~~~A------~~V~~~~W~~~~------~~~d~A~~~ll~A~~l~pr~~~A~~~m~~~s~~fgeP 149 (277)
T PF13226_consen 87 WVHRAWDIRGSGYA------STVTEAQWLGAH------QACDQAVAALLKAIELSPRPVAAAIGMINISAYFGEP 149 (277)
T ss_pred HHHHHHHHHccchh------cccCHHHHHHHH------HHHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhcCCc
Confidence 65421000000000 000111111111 1134566666666666666666665555555555554
No 433
>KOG4279|consensus
Probab=78.86 E-value=32 Score=32.15 Aligned_cols=179 Identities=11% Similarity=0.030 Sum_probs=98.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhchHHHH------HHHHHHHHhcCCCcchHHHHHHHHHHHhhC-cccHHH
Q psy9209 40 FAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAK------SLLRSIAQKRQPDESSSQAVLYFQRALKLN-PNYLGV 112 (349)
Q Consensus 40 ~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~------~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~ 112 (349)
..-..+-..|....+|+.-++..+..- .-|+.-... +.++-......+-|+-.+|+...-.+++.. |-.++.
T Consensus 202 d~V~nlmlSyRDvQdY~amirLVe~Lk-~iP~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~eg~vapDm 280 (1226)
T KOG4279|consen 202 DTVSNLMLSYRDVQDYDAMIRLVEDLK-RIPDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKEGPVAPDM 280 (1226)
T ss_pred HHHHHHHhhhccccchHHHHHHHHHHH-hCcchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhcCCCCCce
Confidence 455666777888888887777665543 334221110 011111122345688999999888888764 445566
Q ss_pred HHHHHHHHHh---------cCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCC-HHHHHHHHHHHHhcC-----CC-
Q psy9209 113 WTLLGHEYME---------MKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRL-PYYGLYYYKQAHMVR-----PN- 176 (349)
Q Consensus 113 ~~~la~~~~~---------~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~~~~~~-----~~- 176 (349)
+...|.+|.. .+..+.|++.|+++.+..|.. ..-.+++.++...|+ ++...+.-.-...++ ..
T Consensus 281 ~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFeveP~~-~sGIN~atLL~aaG~~Fens~Elq~IgmkLn~LlgrKG~ 359 (1226)
T KOG4279|consen 281 YCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEVEPLE-YSGINLATLLRAAGEHFENSLELQQIGMKLNSLLGRKGA 359 (1226)
T ss_pred eeeechhhhhhhhccCCcchhhHHHHHHHHHHHhccCchh-hccccHHHHHHHhhhhccchHHHHHHHHHHHHHhhccch
Confidence 6666776643 456788999999999998853 223455555555443 232222222222211 00
Q ss_pred --ChHHHHHHHHH---HHHhhCHHHHHHHHHHHHccccccHHHHHHHHH
Q psy9209 177 --DPRMLTALGEA---FEKQEKISEAMKCYNKSRAIGDADGKALFKLAK 220 (349)
Q Consensus 177 --~~~~~~~l~~~---~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~ 220 (349)
....|...|.. -.-.+++.+|+..-+...++.|........+..
T Consensus 360 leklq~YWdV~~y~~asVLAnd~~kaiqAae~mfKLk~P~WYLkS~men 408 (1226)
T KOG4279|consen 360 LEKLQEYWDVATYFEASVLANDYQKAIQAAEMMFKLKPPVWYLKSTMEN 408 (1226)
T ss_pred HHHHHHHHhHHHhhhhhhhccCHHHHHHHHHHHhccCCceehHHHHHHH
Confidence 01112222221 123467888888888888887754443333333
No 434
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=78.81 E-value=21 Score=32.37 Aligned_cols=49 Identities=6% Similarity=0.013 Sum_probs=29.8
Q ss_pred HhcCCCcchHHHHHHHHHHHhhCcccHHHHHHHHHHHHhcCChHHHHHHHH
Q psy9209 84 QKRQPDESSSQAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYR 134 (349)
Q Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 134 (349)
..+...+..++|-.+|++.+..+|+ ..++..+.-+.+.|-...|...++
T Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 98 (578)
T PRK15490 50 EFLHDVNETERAYALYETLIAQNND--EARYEYARRLYNTGLAKDAQLILK 98 (578)
T ss_pred hhhhhhhhhHhHHHHHHHHHHhCCc--chHHHHHHHHHhhhhhhHHHHHHH
Confidence 3344446666666666666666666 455566666666666666666555
No 435
>PRK12798 chemotaxis protein; Reviewed
Probab=78.76 E-value=42 Score=28.95 Aligned_cols=166 Identities=11% Similarity=-0.033 Sum_probs=81.7
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHh-CcccHHHHHHHHH-HHHHhCCHHHHHHHHHHHHhcCCCCh---HHHHHHH
Q psy9209 111 GVWTLLGHEYMEMKNTNAAIQCYRQAIEI-NNLDYRAWYGLGQ-TYEILRLPYYGLYYYKQAHMVRPNDP---RMLTALG 185 (349)
Q Consensus 111 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~-~~~~~~~~~~l~~-~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~l~ 185 (349)
+.-..-|..-+-.|+-.++.+.+...-.. .|.....+..|.. ......+..+|+..|+.+--..|... -++..-.
T Consensus 113 d~~L~~g~laY~~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRLlaPGTLvEEAALRRsi 192 (421)
T PRK12798 113 DQRLADGALAYLSGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARLLAPGTLVEEAALRRSL 192 (421)
T ss_pred hHHHHHHHHHHHcCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHHhCCchHHHHHHHHHhh
Confidence 33444455555667777666666543221 1222233333333 33345566777777777766666643 2333333
Q ss_pred HHHHHhhCHHHHHHHHHHHHccccccHH---HHHHHHHHHHhcCcHHHHHHHHHHHHhc-ccccCCCCCCcchHHHHHHH
Q psy9209 186 EAFEKQEKISEAMKCYNKSRAIGDADGK---ALFKLAKLYDKLNETEAAADLFMEFVSK-LDTFAAPPDKTCGFFAFKYL 261 (349)
Q Consensus 186 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~---~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l 261 (349)
.+..+.|+.+++..+-.+.+.....++. .+-.........++-.. ...+...+.. +|. ....+|..+
T Consensus 193 ~la~~~g~~~rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~-~~~l~~~ls~~d~~--------~q~~lYL~i 263 (421)
T PRK12798 193 FIAAQLGDADKFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIR-DARLVEILSFMDPE--------RQRELYLRI 263 (421)
T ss_pred HHHHhcCcHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcccccc-HHHHHHHHHhcCch--------hHHHHHHHH
Confidence 4445666666666665555554333322 22222223333322111 1223333332 222 145566666
Q ss_pred HHHHHHhCCHHHHHHHHHHHHccc
Q psy9209 262 ANHHLKANNLDTAYKCAQKCLQHE 285 (349)
Q Consensus 262 ~~~~~~~g~~~~A~~~~~~a~~~~ 285 (349)
+..-.-.|+.+-|...-++++.+.
T Consensus 264 AR~Ali~Gk~~lA~~As~~A~~L~ 287 (421)
T PRK12798 264 ARAALIDGKTELARFASERALKLA 287 (421)
T ss_pred HHHHHHcCcHHHHHHHHHHHHHhc
Confidence 666666677776666666666553
No 436
>KOG0276|consensus
Probab=78.70 E-value=20 Score=32.42 Aligned_cols=80 Identities=15% Similarity=0.142 Sum_probs=54.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHh
Q psy9209 112 VWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQ 191 (349)
Q Consensus 112 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 191 (349)
.....+..+..+|-.++|++ +.++ +.-.+ .+..+.|+++.|..+..++ ++..-|..||.+....
T Consensus 616 ~rt~va~Fle~~g~~e~AL~-------~s~D-~d~rF---elal~lgrl~iA~~la~e~-----~s~~Kw~~Lg~~al~~ 679 (794)
T KOG0276|consen 616 IRTKVAHFLESQGMKEQALE-------LSTD-PDQRF---ELALKLGRLDIAFDLAVEA-----NSEVKWRQLGDAALSA 679 (794)
T ss_pred hhhhHHhHhhhccchHhhhh-------cCCC-hhhhh---hhhhhcCcHHHHHHHHHhh-----cchHHHHHHHHHHhhc
Confidence 44556666666666555544 3332 22222 2345778888887766654 5667788999999999
Q ss_pred hCHHHHHHHHHHHHcc
Q psy9209 192 EKISEAMKCYNKSRAI 207 (349)
Q Consensus 192 ~~~~~A~~~~~~a~~~ 207 (349)
+++..|.+++.++...
T Consensus 680 ~~l~lA~EC~~~a~d~ 695 (794)
T KOG0276|consen 680 GELPLASECFLRARDL 695 (794)
T ss_pred ccchhHHHHHHhhcch
Confidence 9999999999887653
No 437
>KOG2114|consensus
Probab=78.62 E-value=62 Score=30.75 Aligned_cols=249 Identities=11% Similarity=0.015 Sum_probs=129.0
Q ss_pred hHHhhCcHHHHHHHHHHHHHhccccCCCCCcchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh-hhchHHHHHHHHHHH
Q psy9209 5 LYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQH-EETAEEAKSLLRSIA 83 (349)
Q Consensus 5 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~-~~~~~~~~~~l~~~~ 83 (349)
++.+..-|.-|+.+.+. ...++ ......+...|..++..|++++|...|-+.+.. +|...-.
T Consensus 343 iL~kK~ly~~Ai~LAk~-------~~~d~--d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~s~Vi~-------- 405 (933)
T KOG2114|consen 343 ILFKKNLYKVAINLAKS-------QHLDE--DTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFLEPSEVIK-------- 405 (933)
T ss_pred HHHHhhhHHHHHHHHHh-------cCCCH--HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCChHHHHH--------
Confidence 34455566666665432 12222 223367888899999999999999999998854 3332111
Q ss_pred HhcCCCcchHHHHHHHHHHHhhCcccHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCcccHHHH---HHHHHHHHHhCCH
Q psy9209 84 QKRQPDESSSQAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAW---YGLGQTYEILRLP 160 (349)
Q Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~---~~l~~~~~~~~~~ 160 (349)
-+.......+-..+++...+..-.+.+-...|-.+|.++++.++-.++.++. +. .... -..-.++...+-.
T Consensus 406 -kfLdaq~IknLt~YLe~L~~~gla~~dhttlLLncYiKlkd~~kL~efI~~~----~~-g~~~fd~e~al~Ilr~snyl 479 (933)
T KOG2114|consen 406 -KFLDAQRIKNLTSYLEALHKKGLANSDHTTLLLNCYIKLKDVEKLTEFISKC----DK-GEWFFDVETALEILRKSNYL 479 (933)
T ss_pred -HhcCHHHHHHHHHHHHHHHHcccccchhHHHHHHHHHHhcchHHHHHHHhcC----CC-cceeeeHHHHHHHHHHhChH
Confidence 1122234445555666666655555555667778899999887755554432 21 1110 0111233444444
Q ss_pred HHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhCHHHHHHHHHHHHcccccc-HHHHHHHHHHHHhcCcHHHHHHHHHHHH
Q psy9209 161 YYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDAD-GKALFKLAKLYDKLNETEAAADLFMEFV 239 (349)
Q Consensus 161 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 239 (349)
++|...-.+.-. +. ..+-.++...++|++|+.++... .|.. .......|..+... .+++-...+-+.+
T Consensus 480 ~~a~~LA~k~~~----he---~vl~ille~~~ny~eAl~yi~sl---p~~e~l~~l~kyGk~Ll~h-~P~~t~~ili~~~ 548 (933)
T KOG2114|consen 480 DEAELLATKFKK----HE---WVLDILLEDLHNYEEALRYISSL---PISELLRTLNKYGKILLEH-DPEETMKILIELI 548 (933)
T ss_pred HHHHHHHHHhcc----CH---HHHHHHHHHhcCHHHHHHHHhcC---CHHHHHHHHHHHHHHHHhh-ChHHHHHHHHHHH
Confidence 555444433311 11 22344566788899999887653 2222 23344556655543 3455555555554
Q ss_pred hcccccCCCCCCcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHcccCChHH
Q psy9209 240 SKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEE 290 (349)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 290 (349)
......+... .....-..+-.+..-.+++..-..+++...+..|+.++
T Consensus 549 t~~~~~~~~~---~~s~~~~~~~~i~if~~~~~~~~~Fl~~~~E~s~~s~e 596 (933)
T KOG2114|consen 549 TELNSQGKGK---SLSNIPDSIEFIGIFSQNYQILLNFLESMSEISPDSEE 596 (933)
T ss_pred hhcCCCCCCc---hhhcCccchhheeeeccCHHHHHHHHHHHHhcCCCchh
Confidence 4322100000 00000011222333445666666666666666665443
No 438
>KOG2758|consensus
Probab=78.58 E-value=37 Score=28.12 Aligned_cols=183 Identities=9% Similarity=-0.085 Sum_probs=99.4
Q ss_pred HHHHHHHHHHhhCcccHHHHHHHHHHHHhcCChHHHHHHHHHHHHh--Cc--ccHHHHHHHHHHHHHhCCHHHHHHHHHH
Q psy9209 94 QAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEI--NN--LDYRAWYGLGQTYEILRLPYYGLYYYKQ 169 (349)
Q Consensus 94 ~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 169 (349)
.-++.+++--...|+..++.+..+...+..|+|..|-.++-....+ +| +...+.++.-..-.-..+|+.|++-+.+
T Consensus 113 ~~l~~L~e~ynf~~e~i~~lykyakfqyeCGNY~gAs~yLY~~r~l~~~~d~n~lsalwGKlASEIL~qnWd~A~edL~r 192 (432)
T KOG2758|consen 113 QNLQHLQEHYNFTPERIETLYKYAKFQYECGNYSGASDYLYFYRALVSDPDRNYLSALWGKLASEILTQNWDGALEDLTR 192 (432)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 3444555555567888899999999999999999998876554443 22 2334444333344556789999988887
Q ss_pred HHhcC---CCCh--HHHHHHHH----HHHHhhCHHHHHHHHHHHHcccc--------ccHHHHHHHHHHHHhc-CcHHHH
Q psy9209 170 AHMVR---PNDP--RMLTALGE----AFEKQEKISEAMKCYNKSRAIGD--------ADGKALFKLAKLYDKL-NETEAA 231 (349)
Q Consensus 170 ~~~~~---~~~~--~~~~~l~~----~~~~~~~~~~A~~~~~~a~~~~~--------~~~~~~~~l~~~~~~~-~~~~~A 231 (349)
.-+.- +-+. ..+..... .++-.=++.++...+-.++-..| ..|..+..++.+-.-. .+...+
T Consensus 193 Lre~IDs~~f~~~~~~l~qRtWLiHWslfv~fnhpkgrd~iid~fly~p~YLNaIQt~cPhllRYLatAvvtnk~~rr~~ 272 (432)
T KOG2758|consen 193 LREYIDSKSFSTSAQQLQQRTWLIHWSLFVFFNHPKGRDTIIDMFLYQPPYLNAIQTSCPHLLRYLATAVVTNKRRRRNR 272 (432)
T ss_pred HHHHHcccccccHHHHHHHHHHHHHHHHHhhccCCChhhHHHHHHccCHHHHHHHHhhCHHHHHHHHHHhhcchHhhHHH
Confidence 76642 2211 11111111 11111111222222222221111 1345555555554433 556677
Q ss_pred HHHHHHHHhcccccCCCCCCcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHcc
Q psy9209 232 ADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQH 284 (349)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 284 (349)
.+.+-+++....-. ..+.-...-.+++-.=+++.|...++++-+.
T Consensus 273 lkdlvkVIqqE~ys--------YkDPiteFl~clyvn~DFdgAq~kl~eCeeV 317 (432)
T KOG2758|consen 273 LKDLVKVIQQESYS--------YKDPITEFLECLYVNYDFDGAQKKLRECEEV 317 (432)
T ss_pred HHHHHHHHHHhccc--------cCCcHHHHHHHHhhccchHHHHHHHHHHHHH
Confidence 77777777754331 1112223334555566899998888776543
No 439
>PRK11619 lytic murein transglycosylase; Provisional
Probab=78.22 E-value=60 Score=30.37 Aligned_cols=194 Identities=8% Similarity=-0.066 Sum_probs=114.6
Q ss_pred HHHHHhcCChHHHHHHHHHHHHhCccc----HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhh
Q psy9209 117 GHEYMEMKNTNAAIQCYRQAIEINNLD----YRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQE 192 (349)
Q Consensus 117 a~~~~~~~~~~~A~~~~~~a~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 192 (349)
+..-....+.+.|...+.+.....+-. ..++..+|.-....+...+|..++..+.... .+....-....+....+
T Consensus 248 ~l~Rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~-~~~~~~e~r~r~Al~~~ 326 (644)
T PRK11619 248 AFASVARQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS-QSTSLLERRVRMALGTG 326 (644)
T ss_pred HHHHHHHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc-CCcHHHHHHHHHHHHcc
Confidence 333445566677777777654432211 2233344433333323566777777654332 23333344444555788
Q ss_pred CHHHHHHHHHHHHccccccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccc-C--------CC-----CCCcc-----
Q psy9209 193 KISEAMKCYNKSRAIGDADGKALFKLAKLYDKLNETEAAADLFMEFVSKLDTF-A--------AP-----PDKTC----- 253 (349)
Q Consensus 193 ~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~--------~~-----~~~~~----- 253 (349)
+++.+...+..+-..........+-+|..+...|+.++|...|+++... .+. + .. ...+.
T Consensus 327 dw~~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~~-~~fYG~LAa~~Lg~~~~~~~~~~~~~~~~~ 405 (644)
T PRK11619 327 DRRGLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQQ-RGFYPMVAAQRLGEEYPLKIDKAPKPDSAL 405 (644)
T ss_pred CHHHHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcC-CCcHHHHHHHHcCCCCCCCCCCCCchhhhh
Confidence 8887777777654333445667788888888889999999988887442 111 0 00 00000
Q ss_pred hHHHHHHHHHHHHHhCCHHHHHHHHHHHHcccCChHHHHHHHHHHHHHcCCCCCchhHHHH
Q psy9209 254 GFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDESSSQPMEC 314 (349)
Q Consensus 254 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 314 (349)
........+..+...|+...|...+..++.. .++.....++.+....|.++.++....+
T Consensus 406 ~~~~~~~ra~~L~~~g~~~~a~~ew~~~~~~--~~~~~~~~la~~A~~~g~~~~ai~~~~~ 464 (644)
T PRK11619 406 TQGPEMARVRELMYWNMDNTARSEWANLVAS--RSKTEQAQLARYAFNQQWWDLSVQATIA 464 (644)
T ss_pred ccChHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHCCCHHHHHHHHhh
Confidence 0112345677788889999999999888775 2345566777777778877766655443
No 440
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=77.93 E-value=36 Score=27.69 Aligned_cols=202 Identities=12% Similarity=0.017 Sum_probs=123.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhhhhc-----hHHHHHHHHHHHHhcCCCcchHHHHHH---HHHHHhhC--cccHHH
Q psy9209 43 KYLANHHLKANNLDTAYKCAQKCLQHEET-----AEEAKSLLRSIAQKRQPDESSSQAVLY---FQRALKLN--PNYLGV 112 (349)
Q Consensus 43 ~~l~~~~~~~~~~~~A~~~~~~~l~~~~~-----~~~~~~~l~~~~~~~~~~~~~~~A~~~---~~~~~~~~--~~~~~~ 112 (349)
..+++...+.+++++|+..|.+.+..... -.+--..+..++..|...|++..--+. .+.+.... |....+
T Consensus 7 le~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Ki 86 (421)
T COG5159 7 LELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKI 86 (421)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHH
Confidence 56788888999999999999999865211 011111234455556666666543333 33333222 222222
Q ss_pred HHHHHH-HHHhcCChHHHHHHHHHHHHhCcccH------HHHHHHHHHHHHhCCHHHHHHHHHHHHhc------CCCChH
Q psy9209 113 WTLLGH-EYMEMKNTNAAIQCYRQAIEINNLDY------RAWYGLGQTYEILRLPYYGLYYYKQAHMV------RPNDPR 179 (349)
Q Consensus 113 ~~~la~-~~~~~~~~~~A~~~~~~a~~~~~~~~------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------~~~~~~ 179 (349)
...+-. .-.....++.-+..+...++.....- ..-..+...++..|+|.+|+......+.. .|.-..
T Consensus 87 irtLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~ 166 (421)
T COG5159 87 IRTLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLIT 166 (421)
T ss_pred HHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceee
Confidence 222211 12234556677777777776533222 22345677889999999999887766542 344457
Q ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHcc-----ccccHHHH--HHHHHHHHhcCcHHHHHHHHHHHHhcccc
Q psy9209 180 MLTALGEAFEKQEKISEAMKCYNKSRAI-----GDADGKAL--FKLAKLYDKLNETEAAADLFMEFVSKLDT 244 (349)
Q Consensus 180 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~-----~~~~~~~~--~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 244 (349)
++..-..+|....+..++...+..+-.. .|....+- ..-|..+..-.+|.-|..+|-++++-...
T Consensus 167 vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~lDL~sGIlhcdd~dyktA~SYF~Ea~Egft~ 238 (421)
T COG5159 167 VHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQLDLLSGILHCDDRDYKTASSYFIEALEGFTL 238 (421)
T ss_pred hhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHHHHhccceeeccccchhHHHHHHHHHhcccc
Confidence 7778888999999988888887766543 23222222 22355566778899999999999886543
No 441
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=77.61 E-value=30 Score=26.52 Aligned_cols=32 Identities=9% Similarity=-0.013 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHcccc--ccHHHHHHHHHHHHhc
Q psy9209 194 ISEAMKCYNKSRAIGD--ADGKALFKLAKLYDKL 225 (349)
Q Consensus 194 ~~~A~~~~~~a~~~~~--~~~~~~~~l~~~~~~~ 225 (349)
+++.++-+.+.+-.-| ++++.|+..|.|+...
T Consensus 158 ~~~l~~ri~Elvl~PPy~d~~el~~i~~m~~L~~ 191 (199)
T PF04090_consen 158 YQQLIERIDELVLSPPYMDDGELWFIRGMCHLWI 191 (199)
T ss_pred HHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHH
Confidence 4555555555554444 5788888888887654
No 442
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=76.36 E-value=22 Score=24.59 Aligned_cols=59 Identities=10% Similarity=0.146 Sum_probs=38.6
Q ss_pred HHHHHHHHHhhCHHHHHHHHHHHHccccc---------------cHHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Q psy9209 182 TALGEAFEKQEKISEAMKCYNKSRAIGDA---------------DGKALFKLAKLYDKLNETEAAADLFMEFVS 240 (349)
Q Consensus 182 ~~l~~~~~~~~~~~~A~~~~~~a~~~~~~---------------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 240 (349)
..+|....+.+++-.++-.|++|+.+..+ ......++|..+..+|+.+-.+++++-+-+
T Consensus 5 tllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlASE 78 (140)
T PF10952_consen 5 TLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLASE 78 (140)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHHH
Confidence 34555556666666666666666554211 123456899999999999999998875543
No 443
>KOG2561|consensus
Probab=76.35 E-value=51 Score=28.62 Aligned_cols=95 Identities=15% Similarity=-0.017 Sum_probs=59.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHh-----------CcccHHHHHHHHHHHHHhCCH----------HHHHHHHHHHH
Q psy9209 113 WTLLGHEYMEMKNTNAAIQCYRQAIEI-----------NNLDYRAWYGLGQTYEILRLP----------YYGLYYYKQAH 171 (349)
Q Consensus 113 ~~~la~~~~~~~~~~~A~~~~~~a~~~-----------~~~~~~~~~~l~~~~~~~~~~----------~~A~~~~~~~~ 171 (349)
+...|.+.+....|++|+.++-.|-+. -.+.+..-..+.+||+.+.+. ..|.+.|.++.
T Consensus 166 ~hekaRa~m~re~y~eAl~~LleADe~F~~Cd~klLe~VDNyallnLDIVWCYfrLknitcL~DAe~RL~ra~kgf~~sy 245 (568)
T KOG2561|consen 166 LHEKARAAMEREMYSEALLVLLEADESFSLCDSKLLELVDNYALLNLDIVWCYFRLKNITCLPDAEVRLVRARKGFERSY 245 (568)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcchhhhhcchhheehhhcccccCChHHHHHHHHHHhhhhhh
Confidence 456677788888888888877666443 222333444567778776653 22333333332
Q ss_pred hc---------CCCCh------HHHHHHHHHHHHhhCHHHHHHHHHHHHcc
Q psy9209 172 MV---------RPNDP------RMLTALGEAFEKQEKISEAMKCYNKSRAI 207 (349)
Q Consensus 172 ~~---------~~~~~------~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 207 (349)
-. .+..| ..+..-|.+.+.+|+-++|.++++.+...
T Consensus 246 Genl~Rl~~lKg~~spEraL~lRL~LLQGV~~yHqg~~deAye~le~a~~~ 296 (568)
T KOG2561|consen 246 GENLSRLRSLKGGQSPERALILRLELLQGVVAYHQGQRDEAYEALESAHAK 296 (568)
T ss_pred hhhhHhhhhccCCCChhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 11 22222 34456688899999999999999987653
No 444
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=76.20 E-value=7.7 Score=19.08 Aligned_cols=26 Identities=19% Similarity=0.289 Sum_probs=15.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHH
Q psy9209 113 WTLLGHEYMEMKNTNAAIQCYRQAIE 138 (349)
Q Consensus 113 ~~~la~~~~~~~~~~~A~~~~~~a~~ 138 (349)
|..+...+.+.|+++.|..+|+...+
T Consensus 4 y~~ll~a~~~~g~~~~a~~~~~~M~~ 29 (34)
T PF13812_consen 4 YNALLRACAKAGDPDAALQLFDEMKE 29 (34)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 44555556666666666666665544
No 445
>KOG0128|consensus
Probab=76.13 E-value=72 Score=30.25 Aligned_cols=203 Identities=9% Similarity=0.026 Sum_probs=124.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhchHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhCcccHHHHHHHHHH
Q psy9209 40 FAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDESSSQAVLYFQRALKLNPNYLGVWTLLGHE 119 (349)
Q Consensus 40 ~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 119 (349)
..+..|..++...|++++-...-.++.++.|..+..|..+..--......++..++...|++++.-. +.+..|...+..
T Consensus 114 ~~~v~Li~llrk~~dl~kl~~ar~~~~~~~pl~~~lWl~Wl~d~~~mt~s~~~~~v~~~~ekal~dy-~~v~iw~e~~~y 192 (881)
T KOG0128|consen 114 AQMVQLIGLLRKLGDLEKLRQARLEMSEIAPLPPHLWLEWLKDELSMTQSEERKEVEELFEKALGDY-NSVPIWEEVVNY 192 (881)
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccCcchhHHHHHHHHHhccc-ccchHHHHHHHH
Confidence 4577788888899999888777777778888888777655443333344588899999999998643 334444333333
Q ss_pred -------HHhcCChHHHHHHHHHHHHhCcc-------cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHH----H
Q psy9209 120 -------YMEMKNTNAAIQCYRQAIEINNL-------DYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRM----L 181 (349)
Q Consensus 120 -------~~~~~~~~~A~~~~~~a~~~~~~-------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~----~ 181 (349)
+...++++.-...|.+++..-.. ....+...-..|...-..++-+.++...+... -+..+ |
T Consensus 193 ~~~~~~~~~~~~d~k~~R~vf~ral~s~g~~~t~G~~~we~~~E~e~~~l~n~~~~qv~a~~~~el~~~-~D~~~~~~~~ 271 (881)
T KOG0128|consen 193 LVGFGNVAKKSEDYKKERSVFERALRSLGSHITEGAAIWEMYREFEVTYLCNVEQRQVIALFVRELKQP-LDEDTRGWDL 271 (881)
T ss_pred HHhccccccccccchhhhHHHHHHHhhhhhhhcccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcc-chhhhhHHHH
Confidence 34557788888899998874221 24445555566666665677777777776653 22211 1
Q ss_pred HHHH--HH-HHHhhCHHHHHHH-------HHHHHccccccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccc
Q psy9209 182 TALG--EA-FEKQEKISEAMKC-------YNKSRAIGDADGKALFKLAKLYDKLNETEAAADLFMEFVSKLDT 244 (349)
Q Consensus 182 ~~l~--~~-~~~~~~~~~A~~~-------~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 244 (349)
.... .. .....+++.|..- +++.+...|.....|..+.......|.+..-...+++++...+.
T Consensus 272 ~~~sk~h~~~~~~~~~~~a~~~l~~~~~~~e~~~q~~~~~~q~~~~yidfe~~~G~p~ri~l~~eR~~~E~~~ 344 (881)
T KOG0128|consen 272 SEQSKAHVYDVETKKLDDALKNLAKILFKFERLVQKEPIKDQEWMSYIDFEKKSGDPVRIQLIEERAVAEMVL 344 (881)
T ss_pred HHHHhcchHHHHhccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHhccc
Confidence 1111 11 1123344444443 33344444545556666777777788777777777777765554
No 446
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=76.03 E-value=53 Score=28.64 Aligned_cols=36 Identities=25% Similarity=0.277 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHcccCChHHHH
Q psy9209 257 AFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAK 292 (349)
Q Consensus 257 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 292 (349)
++..--...++.++|..|..+.++.+++.|....+.
T Consensus 302 aLr~AM~~~~K~KNf~tAa~FArRLLel~p~~~~a~ 337 (422)
T PF06957_consen 302 ALRSAMSQAFKLKNFITAASFARRLLELNPSPEVAE 337 (422)
T ss_dssp HHHHHHHHCCCTTBHHHHHHHHHHHHCT--SCHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHcCCCHHHHH
Confidence 333334456778999999999999999998765443
No 447
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=75.81 E-value=6.8 Score=24.39 Aligned_cols=17 Identities=41% Similarity=0.616 Sum_probs=9.5
Q ss_pred hcCChHHHHHHHHHHHH
Q psy9209 122 EMKNTNAAIQCYRQAIE 138 (349)
Q Consensus 122 ~~~~~~~A~~~~~~a~~ 138 (349)
..|++++|+.+|..+++
T Consensus 18 ~~gny~eA~~lY~~ale 34 (75)
T cd02680 18 EKGNAEEAIELYTEAVE 34 (75)
T ss_pred HhhhHHHHHHHHHHHHH
Confidence 34555566665555554
No 448
>KOG0687|consensus
Probab=75.52 E-value=46 Score=27.68 Aligned_cols=100 Identities=14% Similarity=-0.031 Sum_probs=67.4
Q ss_pred cHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCcc------cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCC---hH
Q psy9209 109 YLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNL------DYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPND---PR 179 (349)
Q Consensus 109 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~ 179 (349)
-.+++...|..|.+.|+-+.|.+.+.+..+..-. -.-....+|..|....-..+.++-.+..++...+- ..
T Consensus 103 v~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNR 182 (393)
T KOG0687|consen 103 VREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNR 182 (393)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhh
Confidence 3578899999999999999999999887764321 12344566777765554444444444444433221 13
Q ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHccc
Q psy9209 180 MLTALGEAFEKQEKISEAMKCYNKSRAIG 208 (349)
Q Consensus 180 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 208 (349)
.-...|.......++.+|..+|-.++...
T Consensus 183 lKvY~Gly~msvR~Fk~Aa~Lfld~vsTF 211 (393)
T KOG0687|consen 183 LKVYQGLYCMSVRNFKEAADLFLDSVSTF 211 (393)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHcccc
Confidence 34456777778889999999998887663
No 449
>KOG4521|consensus
Probab=75.48 E-value=90 Score=31.05 Aligned_cols=78 Identities=9% Similarity=-0.092 Sum_probs=38.2
Q ss_pred HHHHHHhhCHHHHHHHHHHHHcccc----ccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCCCCCcchHHHHHH
Q psy9209 185 GEAFEKQEKISEAMKCYNKSRAIGD----ADGKALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKY 260 (349)
Q Consensus 185 ~~~~~~~~~~~~A~~~~~~a~~~~~----~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (349)
.+++.+-+-.+.+++.-.+|++.-| .-+.....+-+.+..+|.+-+|...+ -.+|+ .......+..
T Consensus 990 ~rlle~hn~~E~vcQlA~~AIe~l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai----~~npd------serrrdcLRq 1059 (1480)
T KOG4521|consen 990 VRLLEEHNHAEEVCQLAVKAIENLPDDNPSVALISTTVFNHHLDLGHWFQAYKAI----LRNPD------SERRRDCLRQ 1059 (1480)
T ss_pred HHHHHHhccHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhhchhhHHHHHHHH----HcCCc------HHHHHHHHHH
Confidence 3444445555666666666665522 22333444444555666666665432 22332 2223455555
Q ss_pred HHHHHHHhCCHH
Q psy9209 261 LANHHLKANNLD 272 (349)
Q Consensus 261 l~~~~~~~g~~~ 272 (349)
+..++++.|.++
T Consensus 1060 lvivLfecg~l~ 1071 (1480)
T KOG4521|consen 1060 LVIVLFECGELE 1071 (1480)
T ss_pred HHHHHHhccchH
Confidence 566666655543
No 450
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=74.89 E-value=18 Score=22.60 Aligned_cols=22 Identities=32% Similarity=0.383 Sum_probs=10.8
Q ss_pred HHHHHhcCChHHHHHHHHHHHH
Q psy9209 117 GHEYMEMKNTNAAIQCYRQAIE 138 (349)
Q Consensus 117 a~~~~~~~~~~~A~~~~~~a~~ 138 (349)
|.-+-..|++++|+.+|+++++
T Consensus 13 AVe~D~~gr~~eAi~~Y~~aIe 34 (75)
T cd02682 13 AVKAEKEGNAEDAITNYKKAIE 34 (75)
T ss_pred HHHHHhcCCHHHHHHHHHHHHH
Confidence 3344445555555555554443
No 451
>PF04348 LppC: LppC putative lipoprotein; InterPro: IPR007443 This entry includes several bacterial outer membrane antigens, whose molecular function is unknown.; PDB: 3CKM_A.
Probab=74.84 E-value=0.96 Score=40.63 Aligned_cols=25 Identities=12% Similarity=0.004 Sum_probs=0.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHh
Q psy9209 42 FKYLANHHLKANNLDTAYKCAQKCL 66 (349)
Q Consensus 42 ~~~l~~~~~~~~~~~~A~~~~~~~l 66 (349)
...-+..++..|++..|...+.+.-
T Consensus 27 ~L~Aa~a~l~~g~~~~A~~ll~~l~ 51 (536)
T PF04348_consen 27 LLLAARALLQEGDWAQAQALLNQLD 51 (536)
T ss_dssp -------------------------
T ss_pred HHHHHHHHHhCCCHHHHHHHHHhcc
Confidence 3344444555555555555554443
No 452
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=74.64 E-value=18 Score=22.56 Aligned_cols=18 Identities=22% Similarity=0.003 Sum_probs=9.1
Q ss_pred HHHhCCHHHHHHHHHHHH
Q psy9209 154 YEILRLPYYGLYYYKQAH 171 (349)
Q Consensus 154 ~~~~~~~~~A~~~~~~~~ 171 (349)
+-..|++.+|+.+|++++
T Consensus 16 ~D~~gr~~eAi~~Y~~aI 33 (75)
T cd02682 16 AEKEGNAEDAITNYKKAI 33 (75)
T ss_pred HHhcCCHHHHHHHHHHHH
Confidence 344555555555555443
No 453
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=73.83 E-value=61 Score=28.35 Aligned_cols=29 Identities=14% Similarity=0.169 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhh
Q psy9209 40 FAFKYLANHHLKANNLDTAYKCAQKCLQH 68 (349)
Q Consensus 40 ~~~~~l~~~~~~~~~~~~A~~~~~~~l~~ 68 (349)
.....+|..++..|+|+.|...|+.+..-
T Consensus 209 ~q~R~LAD~aFml~Dy~~A~s~Y~~~k~D 237 (414)
T PF12739_consen 209 AQMRRLADLAFMLRDYELAYSTYRLLKKD 237 (414)
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHH
Confidence 35778999999999999999999988764
No 454
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=73.73 E-value=7.6 Score=24.19 Aligned_cols=19 Identities=11% Similarity=0.088 Sum_probs=15.0
Q ss_pred HHhCCHHHHHHHHHHHHcc
Q psy9209 266 LKANNLDTAYKCAQKCLQH 284 (349)
Q Consensus 266 ~~~g~~~~A~~~~~~a~~~ 284 (349)
-..|++++|+.+|..+++.
T Consensus 17 D~~gny~eA~~lY~~ale~ 35 (75)
T cd02680 17 DEKGNAEEAIELYTEAVEL 35 (75)
T ss_pred hHhhhHHHHHHHHHHHHHH
Confidence 3458899999999988765
No 455
>KOG4151|consensus
Probab=72.84 E-value=13 Score=34.40 Aligned_cols=107 Identities=10% Similarity=0.018 Sum_probs=78.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhhhhch-HH--HHHHHHHHHHhcCCCcchHHHHHHHHHHHhhCcccHHHHHHHHH
Q psy9209 42 FKYLANHHLKANNLDTAYKCAQKCLQHEETA-EE--AKSLLRSIAQKRQPDESSSQAVLYFQRALKLNPNYLGVWTLLGH 118 (349)
Q Consensus 42 ~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~-~~--~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~ 118 (349)
...-|+..++.+++..+.--|..++.+-|.+ .. ...............|++..++.-..-++...|....+....+.
T Consensus 56 ~~~E~n~~~~K~d~~~~~~~~~~~~~llp~~~~~~a~~~~~~~s~~m~~~l~~~~~~~~E~~la~~~~p~i~~~Ll~r~~ 135 (748)
T KOG4151|consen 56 LKEEGNKLFQKRDYEGAMFRYDCAIKLLPKDHHVVATLRSNQASCYMQLGLGEYPKAIPECELALESQPRISKALLKRAR 135 (748)
T ss_pred HHhhhhHHhhhhhhhccchhhhhhheeccccchhhhhHHHHHHHHHhhcCccchhhhcCchhhhhhccchHHHHHhhhhh
Confidence 3445667778888888877777777776632 22 12222233445566789999999999999999999899999999
Q ss_pred HHHhcCChHHHHHHHHHHHHhCcccHHHHH
Q psy9209 119 EYMEMKNTNAAIQCYRQAIEINNLDYRAWY 148 (349)
Q Consensus 119 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~ 148 (349)
+|...+.++-|++...-.....|.+..+..
T Consensus 136 ~y~al~k~d~a~rdl~i~~~~~p~~~~~~e 165 (748)
T KOG4151|consen 136 KYEALNKLDLAVRDLRIVEKMDPSNVSASE 165 (748)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCcchHHH
Confidence 999999999898887766777887744433
No 456
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=72.69 E-value=51 Score=26.92 Aligned_cols=124 Identities=8% Similarity=-0.004 Sum_probs=71.5
Q ss_pred HHHHHHHHHHHHhccccCCCCCcchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhh---chHHHHHHHHHHHHhcCCC
Q psy9209 13 EAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEE---TAEEAKSLLRSIAQKRQPD 89 (349)
Q Consensus 13 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~---~~~~~~~~l~~~~~~~~~~ 89 (349)
++-++-+.+.++...... .......++.++|..|.+.++.+.+.+.+.+.++..- -..+.......++..|..+
T Consensus 92 eeki~Elde~i~~~eedn---gE~e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~ 168 (412)
T COG5187 92 EEKIEELDERIREKEEDN---GETEGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDR 168 (412)
T ss_pred HHHHHHHHHHHHHHhhcc---cchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccH
Confidence 344555555554332222 2334456888888888888888888888877775432 1223444455566666444
Q ss_pred cchHHHHHHHHHHHhhCcccH---HHHHHHHHHHHhcCChHHHHHHHHHHHHh
Q psy9209 90 ESSSQAVLYFQRALKLNPNYL---GVWTLLGHEYMEMKNTNAAIQCYRQAIEI 139 (349)
Q Consensus 90 ~~~~~A~~~~~~~~~~~~~~~---~~~~~la~~~~~~~~~~~A~~~~~~a~~~ 139 (349)
.-.++.++.....++..-+.. ..-...|...+...++.+|..++...+..
T Consensus 169 ~vV~e~lE~~~~~iEkGgDWeRrNRyK~Y~Gi~~m~~RnFkeAa~Ll~d~l~t 221 (412)
T COG5187 169 KVVEESLEVADDIIEKGGDWERRNRYKVYKGIFKMMRRNFKEAAILLSDILPT 221 (412)
T ss_pred HHHHHHHHHHHHHHHhCCCHHhhhhHHHHHHHHHHHHHhhHHHHHHHHHHhcc
Confidence 444555555555555443311 12234455666667777777777766653
No 457
>KOG1497|consensus
Probab=70.98 E-value=59 Score=26.96 Aligned_cols=59 Identities=10% Similarity=0.009 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC--------ChHHHHHHHHHHHHhhCHHHHHHHHHHH
Q psy9209 145 RAWYGLGQTYEILRLPYYGLYYYKQAHMVRPN--------DPRMLTALGEAFEKQEKISEAMKCYNKS 204 (349)
Q Consensus 145 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--------~~~~~~~l~~~~~~~~~~~~A~~~~~~a 204 (349)
.....||.+|.+.++|..|...+.-. ..+.. ....+..+|.+|...++..+|..+..++
T Consensus 104 ~irl~LAsiYE~Eq~~~~aaq~L~~I-~~~tg~~~~d~~~kl~l~iriarlyLe~~d~veae~~inRa 170 (399)
T KOG1497|consen 104 SIRLHLASIYEKEQNWRDAAQVLVGI-PLDTGQKAYDVEQKLLLCIRIARLYLEDDDKVEAEAYINRA 170 (399)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHhcc-CcccchhhhhhHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 34556666666666666665554322 11110 0123445566666666666666655554
No 458
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=70.66 E-value=92 Score=29.02 Aligned_cols=220 Identities=11% Similarity=-0.003 Sum_probs=0.0
Q ss_pred CcchHHHHHHHHHHHhhCcccHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCccc------HHHHHHHHHHHHHhCCHHH
Q psy9209 89 DESSSQAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLD------YRAWYGLGQTYEILRLPYY 162 (349)
Q Consensus 89 ~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~------~~~~~~l~~~~~~~~~~~~ 162 (349)
.|+++.|+.++-+ .+.+..--..+|.++...|-..-.-..-...+..++.+ +........ .+...+..+
T Consensus 271 tgqFE~AI~~L~~----~~~~~~dAVH~AIaL~~~gLL~~~~~~~~~lls~~~~~~~~ln~arLI~~Y~~-~F~~td~~~ 345 (613)
T PF04097_consen 271 TGQFEAAIEFLYR----NEFNRVDAVHFAIALAYYGLLRVSDSSSAPLLSVDPGDPPPLNFARLIGQYTR-SFEITDPRE 345 (613)
T ss_dssp TT-HHHHHHHHHT------T-HHHHHHHHHHHHHTT------------------------HHHHHHHHHH-TTTTT-HHH
T ss_pred HhhHHHHHHHHHh----hccCcccHHHHHHHHHHcCCCCCCCccccceeeecCCCCCCcCHHHHHHHHHH-HHhccCHHH
Q ss_pred HHHHHHHHHhcCC--CChHHHHHHHHHHHHhhCHHHHHHH-----------HHH------HHccccccHHHHHHHHHHHH
Q psy9209 163 GLYYYKQAHMVRP--NDPRMLTALGEAFEKQEKISEAMKC-----------YNK------SRAIGDADGKALFKLAKLYD 223 (349)
Q Consensus 163 A~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~-----------~~~------a~~~~~~~~~~~~~l~~~~~ 223 (349)
|+.+|--+-.... .....+..+..+....++++.=+.. +++ ..........+....|.-..
T Consensus 346 Al~Y~~li~~~~~~~~~~l~~~~l~eLvletref~~LLG~i~~dG~r~~G~i~~~~~Li~~~~~~~~~~~i~~~~A~~~e 425 (613)
T PF04097_consen 346 ALQYLYLICLFKDPEQRNLFHECLRELVLETREFDLLLGDINPDGSRTPGLIERRLSLIKFDDDEDFLREIIEQAAREAE 425 (613)
T ss_dssp HHHHHHGGGGS-SCCHHHHHHHHHHHHHHHH--HHHHHEEE-TTS-EEE-HHHHTGGGGT-SSSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCchHHHHHHHHHHHHHHccCCHHHHCCCCCCCCccccceeeccccccCCCCcHHHHHHHHHHHHHHHH
Q ss_pred hcCcHHHHHHHHHHHHhcccccCCCCCCcchHHHHHHHHHHHHHhCC-----------HHHHHHHHHHHHc-------cc
Q psy9209 224 KLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANN-----------LDTAYKCAQKCLQ-------HE 285 (349)
Q Consensus 224 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-----------~~~A~~~~~~a~~-------~~ 285 (349)
..|++++|+..|.-+-+.+.- ..-.-..|+.+...... ...|....+..-. ..
T Consensus 426 ~~g~~~dAi~Ly~La~~~d~v---------l~lln~~Ls~~l~~~~~~~~~~s~~~~l~~la~~i~~~y~~~~~~~~~~~ 496 (613)
T PF04097_consen 426 ERGRFEDAILLYHLAEEYDKV---------LSLLNRLLSQVLSQPSSSSLSDSERERLIELAKEILERYKSNPHISSKVS 496 (613)
T ss_dssp HCT-HHHHHHHHHHTT-HHHH---------HHHHHHHHHHHHHCSSTSSSSSTTTTSHHHHHHHHHHHHTTSHHHHTTS-
T ss_pred HCCCHHHHHHHHHHHhhHHHH---------HHHHHHHHHHHHcCccccccccchhhhHHHHHHHHHHHHHhCcchHhhcc
Q ss_pred CChHHHHHHHHHH-----HHHcCCCCCchhHHHHhhhcCCCCC
Q psy9209 286 ETAEEAKSLLRSI-----AQKRQPDESSSQPMECAVVLDPVPP 323 (349)
Q Consensus 286 ~~~~~~~~~l~~~-----~~~~~~~~~A~~~~~~a~~~~p~~~ 323 (349)
+....+...|-.+ ....|+++.|++.+++ +.+-|.++
T Consensus 497 ~~~~~t~~~Ll~L~~ff~~~~~g~~~~AL~~i~~-L~liP~~~ 538 (613)
T PF04097_consen 497 RKNRETFQLLLDLAEFFDLYHAGQYEQALDIIEK-LDLIPLDP 538 (613)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHH-TT-S-S-H
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHh-CCCCCCCH
No 459
>KOG0889|consensus
Probab=68.90 E-value=2.2e+02 Score=32.60 Aligned_cols=45 Identities=13% Similarity=0.003 Sum_probs=36.4
Q ss_pred hHHHHHHHHHHHHHhCCHHHHHHHHHHHHcccCChHHHHHHHHHH
Q psy9209 254 GFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSI 298 (349)
Q Consensus 254 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~ 298 (349)
.++.+...|....+.|+.++|-..|..|+++....+.+|..-|..
T Consensus 2811 ~aeff~lkG~f~~kL~~~eeAn~~fs~AvQi~~~l~KaW~~Wg~y 2855 (3550)
T KOG0889|consen 2811 KAEFFTLKGMFLEKLGKFEEANKAFSAAVQIDDGLGKAWAEWGKY 2855 (3550)
T ss_pred HHHHHHhhhHHHHHhcCcchhHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 466777789999999999999999999999887777777665544
No 460
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=68.90 E-value=20 Score=24.82 Aligned_cols=34 Identities=15% Similarity=0.075 Sum_probs=24.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhhhhchHHH
Q psy9209 42 FKYLANHHLKANNLDTAYKCAQKCLQHEETAEEA 75 (349)
Q Consensus 42 ~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~ 75 (349)
-..+|+.+...|++++|...|-+++...|...+.
T Consensus 66 qV~lGE~L~~~G~~~~aa~hf~nAl~V~~qP~~L 99 (121)
T PF02064_consen 66 QVQLGEQLLAQGDYEEAAEHFYNALKVCPQPAEL 99 (121)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHTSSSHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHhCCCHHHH
Confidence 4467888888888888888888888777765544
No 461
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=68.88 E-value=23 Score=27.81 Aligned_cols=34 Identities=15% Similarity=-0.012 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHH---------hcCcHHHHHHHHHHHHhccccc
Q psy9209 212 GKALFKLAKLYD---------KLNETEAAADLFMEFVSKLDTF 245 (349)
Q Consensus 212 ~~~~~~l~~~~~---------~~~~~~~A~~~~~~~~~~~~~~ 245 (349)
+..+-..|..+. ..++...|..++++++.++|..
T Consensus 169 AKl~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k~ 211 (230)
T PHA02537 169 AKLYKAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDKC 211 (230)
T ss_pred HHHHHHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCCC
Confidence 344555666663 4567889999999999999873
No 462
>COG5536 BET4 Protein prenyltransferase, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=67.74 E-value=65 Score=26.18 Aligned_cols=146 Identities=8% Similarity=0.014 Sum_probs=77.2
Q ss_pred HHHHHHHHHHHHhCcccHHHHHHHHHHHHHh--CCHHHHHHHHHHHHhcCCCChHHHHHHHHHH------HHhhCHHHHH
Q psy9209 127 NAAIQCYRQAIEINNLDYRAWYGLGQTYEIL--RLPYYGLYYYKQAHMVRPNDPRMLTALGEAF------EKQEKISEAM 198 (349)
Q Consensus 127 ~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~--~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~------~~~~~~~~A~ 198 (349)
+.-+..+..+++-+|++...|...-.++... .++..-+...+++++.++.+--.|...-.+. .....+..-.
T Consensus 91 dneld~~~~~lk~~PK~YqiW~HR~~~Le~~p~~~~~rEl~itkklld~DsrNyH~W~YR~~vl~~ie~~~N~S~~k~e~ 170 (328)
T COG5536 91 DNELDFLDEALKDNPKNYQIWHHRQWMLELFPKPSWGRELFITKKLLDSDSRNYHVWSYRRWVLRTIEDLFNFSDLKHEL 170 (328)
T ss_pred hcHHHHHHHHHhcCCchhhhhHHHHHHHHhCCCcccchhHHHHHHHhcccccccceeeeEeeeeecchhhccchhHHHHH
Confidence 3445556666677777777766666555544 4566666667777777776655443322222 2222333334
Q ss_pred HHHHHHHccccccHHHHHHH---HHHHHhcCc------HHHHHHHHHHHHhcccccCCCCCCcchHHHHHHHHHHH----
Q psy9209 199 KCYNKSRAIGDADGKALFKL---AKLYDKLNE------TEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHH---- 265 (349)
Q Consensus 199 ~~~~~a~~~~~~~~~~~~~l---~~~~~~~~~------~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---- 265 (349)
++-..++..++.+..+|... -......|+ +++-+++.-..+-.+|. +..+|..+-.+.
T Consensus 171 eytt~~I~tdi~N~SaW~~r~~~~~~~~~~~~visqk~l~~eL~~i~~~if~~p~---------~~S~w~y~r~~~~~~~ 241 (328)
T COG5536 171 EYTTSLIETDIYNNSAWHHRYIWIERRFNRGDVISQKYLEKELEYIFDKIFTDPD---------NQSVWGYLRGVSSEFA 241 (328)
T ss_pred HhHHHHHhhCCCChHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHhhhhcCcc---------ccchhhHHHHHhccch
Confidence 55555666677777777655 222222333 33444555555555666 455554443222
Q ss_pred HHhCCHHHHHHHHHHH
Q psy9209 266 LKANNLDTAYKCAQKC 281 (349)
Q Consensus 266 ~~~g~~~~A~~~~~~a 281 (349)
...-.+.+-++.+.+-
T Consensus 242 ~d~~~~~e~v~~L~k~ 257 (328)
T COG5536 242 TDIVMIGEKVEDLGKY 257 (328)
T ss_pred HHHHHHHHHHHHHHhh
Confidence 2223455556666444
No 463
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=67.74 E-value=13 Score=23.47 Aligned_cols=21 Identities=19% Similarity=0.237 Sum_probs=13.7
Q ss_pred HHhcCcHHHHHHHHHHHHhcc
Q psy9209 222 YDKLNETEAAADLFMEFVSKL 242 (349)
Q Consensus 222 ~~~~~~~~~A~~~~~~~~~~~ 242 (349)
+-..|+.++|+.+|++++..-
T Consensus 18 ~dE~g~~e~Al~~Y~~gi~~l 38 (79)
T cd02679 18 ADEWGDKEQALAHYRKGLREL 38 (79)
T ss_pred hhhcCCHHHHHHHHHHHHHHH
Confidence 334577777777777776643
No 464
>KOG0292|consensus
Probab=67.31 E-value=1.2e+02 Score=29.21 Aligned_cols=119 Identities=16% Similarity=0.157 Sum_probs=68.3
Q ss_pred HHHHHHHHhhCHHHHHHHHHHHHccccc----------cHHHHHHHHHHHH------------hcCcHHHH--HHHHHHH
Q psy9209 183 ALGEAFEKQEKISEAMKCYNKSRAIGDA----------DGKALFKLAKLYD------------KLNETEAA--ADLFMEF 238 (349)
Q Consensus 183 ~l~~~~~~~~~~~~A~~~~~~a~~~~~~----------~~~~~~~l~~~~~------------~~~~~~~A--~~~~~~~ 238 (349)
..|.-+...|++.+|++.|+..+-.-|- ...-+..++.-|. ..+..+.+ +..|-.-
T Consensus 996 ~~gy~ltt~gKf~eAie~Frsii~~i~l~vvd~~~e~aea~~li~i~~eYi~gL~~E~~Rr~l~~~~~~~~~ElAaYFt~ 1075 (1202)
T KOG0292|consen 996 QKGYKLTTEGKFGEAIEKFRSIIYSIPLLVVDSKEEEAEADELIKICREYIVGLSVELERRKLKKPNLEQQLELAAYFTH 1075 (1202)
T ss_pred HHHHhhhccCcHHHHHHHHHHHHhheeEEEecchhhHHHHHHHHHHHHHHHhhheeeeeecccCCchHHHHHHHHHHhhc
Confidence 3455566789999999999998865331 1222222222221 11223333 1111111
Q ss_pred HhcccccCCCCCCcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHcccCChHHHHHHHHHHHHHcCCCCCch
Q psy9209 239 VSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDESSS 309 (349)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 309 (349)
..+.|. ....++..-..++++.+++..|..+..+.+++.|..+.+....-.......+..+|.
T Consensus 1076 ~~Lqp~--------H~ilalrtA~n~ffK~kN~ktAs~fa~rLlel~~~~~~A~q~rki~~a~eknp~Da~ 1138 (1202)
T KOG0292|consen 1076 CKLQPM--------HRILALRTAMNVFFKLKNLKTAAEFARRLLELAPSPPVAEQARKIKQAAEKNPTDAY 1138 (1202)
T ss_pred CCCCcH--------HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhhcCccccc
Confidence 222232 245555556678899999999999999999999877766544433333334444443
No 465
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=66.79 E-value=37 Score=22.96 Aligned_cols=50 Identities=14% Similarity=-0.076 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHcccCChHHHHHHHHHHHHHcCC
Q psy9209 255 FFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQP 304 (349)
Q Consensus 255 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~ 304 (349)
......-|.+-...|++..|.+...++.+..+...-.+..-++....+||
T Consensus 59 a~~al~~Gl~al~~G~~~~A~k~~~~a~~~~~~~~l~~L~AA~AA~~~gd 108 (108)
T PF07219_consen 59 AQRALSRGLIALAEGDWQRAEKLLAKAAKLSDNPLLNYLLAARAAQAQGD 108 (108)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCC
Confidence 44455667788888999999999999988766666666666777766664
No 466
>PF12753 Nro1: Nuclear pore complex subunit Nro1; InterPro: IPR024318 In fission yeast, Nro1 is a positive regulator of the stability of Sre1N, the sterol regulatory element-binding protein, which is an ER membrane-bound transcription factor that controls adaptation to low oxygen-growth []. In addition, the fission yeast Nro1 is a direct inhibitor of a protein that inhibits SreN1 degradation, Ofd1 (an oxoglutamate deoxygenase). The outcome of this reactivity is that Ofd1 acts as an oxygen sensor that regulates the binding of Nro1 to Ofd1 to control the stability of Sre1N []. This entry also represents ETT1, an Nro1 ortholog []. ETT1 is required for correct translation termination and probably involved in regulation of hypoxic gene expression in association TPA1 []. It inhibits replication of Brome mosaic virus [].; GO: 0005515 protein binding, 0005634 nucleus; PDB: 3QTM_B 3MSV_B 3QTN_B.
Probab=66.48 E-value=32 Score=29.40 Aligned_cols=30 Identities=27% Similarity=0.354 Sum_probs=14.1
Q ss_pred HHHHHHHHHHhcCCCChHHHHHHHHHHHHhhC
Q psy9209 162 YGLYYYKQAHMVRPNDPRMLTALGEAFEKQEK 193 (349)
Q Consensus 162 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 193 (349)
.|+.+++++.. .++|..|..+|.++..+|+
T Consensus 336 ~Al~yL~kA~d--~ddPetWv~vAEa~I~LGN 365 (404)
T PF12753_consen 336 KALEYLKKAQD--EDDPETWVDVAEAMIDLGN 365 (404)
T ss_dssp HHHHHHHHHHH--S--TTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhc--cCChhHHHHHHHHHhhhhc
Confidence 34444444443 3445555555555555543
No 467
>PF08626 TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit; InterPro: IPR013935 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway. To date, two kinds of TRAPP complexes have been studied, TRAPPI and TRAPP II. These complexes differ in subunit composition []. TRAPP I binds vesicles derived from the endoplasmic reticulum bringing them closer to the acceptor membrane. Trs120 is a subunit specific to the TRAPP II complex [] along with Trs65p and Trs130p(TRAPPC10). It is suggested that Trs120p is required for the stability of the Trs130p subunit, suggesting that these two proteins might interact in some way []. It is likely that there is a complex function for TRAPP II in multiple pathways [].
Probab=66.22 E-value=1.4e+02 Score=30.63 Aligned_cols=170 Identities=13% Similarity=0.049 Sum_probs=97.8
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHhCccc------HHHHHHHHHHHHHhCCHHHHH---HHHHHHH---------
Q psy9209 110 LGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLD------YRAWYGLGQTYEILRLPYYGL---YYYKQAH--------- 171 (349)
Q Consensus 110 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~------~~~~~~l~~~~~~~~~~~~A~---~~~~~~~--------- 171 (349)
......+|..++..|++.+|++.|..++..-... ..++-+++.+..-.+....-. .......
T Consensus 242 gR~~k~~gd~~LlaG~~~dAl~~y~~a~~~~k~~~D~lW~a~alEg~~~~~~l~~~~~~~~qip~i~~~~~~~~~~~~~~ 321 (1185)
T PF08626_consen 242 GRLQKVLGDLYLLAGRWPDALKEYTEAIEILKSSNDYLWLASALEGIAVCLLLLSWLGMDFQIPQICSPLCPISSSTSSS 321 (1185)
T ss_pred hhhhhhhhhHHHHcCCHHHHHHHHHHHHHHHhhcCcHhhhHHHHHHHHHHHHHHhccCCCccccchhcccCCCCCccCcc
Confidence 3456788999999999999999999998863321 223333433333222111000 0010000
Q ss_pred ---------hcCCCCh-------HHHHHHHH-HHHHhhCHHHHHHHHHHHHcc----ccc--cHHHHHHHHHHHHhcC--
Q psy9209 172 ---------MVRPNDP-------RMLTALGE-AFEKQEKISEAMKCYNKSRAI----GDA--DGKALFKLAKLYDKLN-- 226 (349)
Q Consensus 172 ---------~~~~~~~-------~~~~~l~~-~~~~~~~~~~A~~~~~~a~~~----~~~--~~~~~~~l~~~~~~~~-- 226 (349)
...|.+. ..-..... .-.-...+++++.+|.++... .|. ..++...++.++....
T Consensus 322 s~~~~~~~~~~sP~~s~~~~~~~~~~~~~~~l~~~i~~~~~~~l~~Y~~~~~~~~~~~p~lv~~E~~lr~~~~l~~~~~~ 401 (1185)
T PF08626_consen 322 SPRNSSSSSTQSPRNSVSSSSSSNIDVNLVNLPNLIPDLYEKALSLYSRSTNDTSEYVPQLVYSEACLRFARFLVAQHLS 401 (1185)
T ss_pred CcccCCccCCCCCCccccCCCccccchhhccCHhhhhHHHHHHHHHHHHhhccccccCcchHHHHHHHHHHHHHHHhhcc
Confidence 0011111 00000111 111223578999999998744 232 2456667777777666
Q ss_pred ------------------cHHHHHHHHHHHHhcccccCCCCCCcchHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q psy9209 227 ------------------ETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCL 282 (349)
Q Consensus 227 ------------------~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 282 (349)
.-.++.....+++..... .....+....+..++.+|...|-..++.-+.+.++
T Consensus 402 ~~l~~iV~~~~~~~~~~~~~~eI~~~l~~~~~~~l~---~l~~~dqi~i~~~lA~vy~~lG~~RK~AFvlR~l~ 472 (1185)
T PF08626_consen 402 DNLDHIVKRPLTPTPNISSRSEIAEFLFKAFPLQLK---DLSVEDQIRIYSGLASVYGSLGFHRKKAFVLRELA 472 (1185)
T ss_pred cchhhhhccccccccCCCCHHHHHHHHHHhhhhhhh---hCCHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 677788888888775443 22334467889999999999998777766666554
No 468
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=64.69 E-value=29 Score=24.12 Aligned_cols=39 Identities=13% Similarity=0.072 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHcccCChHHHHHHH
Q psy9209 257 AFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLL 295 (349)
Q Consensus 257 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l 295 (349)
-...+|..+...|++++|..+|-+|+...|+-.+....+
T Consensus 65 ~qV~lGE~L~~~G~~~~aa~hf~nAl~V~~qP~~LL~i~ 103 (121)
T PF02064_consen 65 QQVQLGEQLLAQGDYEEAAEHFYNALKVCPQPAELLQIY 103 (121)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHTSSSHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 345689999999999999999999999988876655443
No 469
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=64.51 E-value=85 Score=28.72 Aligned_cols=79 Identities=8% Similarity=-0.022 Sum_probs=56.8
Q ss_pred hcCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhCHHHHHHHH
Q psy9209 122 EMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCY 201 (349)
Q Consensus 122 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 201 (349)
+....+.+....+.-+.-...........+..+...+..++|-.+|++.+..+|+ ..++..+.-+.+.|-...|...+
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 97 (578)
T PRK15490 20 QEKKLAQAVALIDSELPTEALTSLAMLKKAEFLHDVNETERAYALYETLIAQNND--EARYEYARRLYNTGLAKDAQLIL 97 (578)
T ss_pred HHhhHHHHHHHHHHhCCccchhHHHHHHHhhhhhhhhhhHhHHHHHHHHHHhCCc--chHHHHHHHHHhhhhhhHHHHHH
Confidence 4445555655555554444445556667777788888888888888888888887 56677788888888888887777
Q ss_pred H
Q psy9209 202 N 202 (349)
Q Consensus 202 ~ 202 (349)
+
T Consensus 98 ~ 98 (578)
T PRK15490 98 K 98 (578)
T ss_pred H
Confidence 6
No 470
>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 [].; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.
Probab=64.34 E-value=94 Score=28.14 Aligned_cols=46 Identities=20% Similarity=0.167 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHh-----CcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Q psy9209 127 NAAIQCYRQAIEI-----NNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHM 172 (349)
Q Consensus 127 ~~A~~~~~~a~~~-----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 172 (349)
..++.+|.+++.. +..+.-.|..+|..+++.+++.+|+..+-++-.
T Consensus 296 ~~~~~l~~~AI~sa~~~Y~n~HvYPYty~gg~~yR~~~~~eA~~~Wa~aa~ 346 (618)
T PF05053_consen 296 PTPLELFNEAISSARTYYNNHHVYPYTYLGGYYYRHKRYREALRSWAEAAD 346 (618)
T ss_dssp --HHHHHHHHHHHHHHHCTT--SHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhcCCccccceehhhHHHHHHHHHHHHHHHHHHHH
Confidence 3456666666653 223345566777777777777777777766643
No 471
>KOG4151|consensus
Probab=64.12 E-value=48 Score=31.05 Aligned_cols=95 Identities=17% Similarity=0.117 Sum_probs=67.6
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCCC----hHHHHHHHHHHHH--hhCHHHHHHHHHHHHccccccHHHHHHHHHHHH
Q psy9209 150 LGQTYEILRLPYYGLYYYKQAHMVRPND----PRMLTALGEAFEK--QEKISEAMKCYNKSRAIGDADGKALFKLAKLYD 223 (349)
Q Consensus 150 l~~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~l~~~~~~--~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~ 223 (349)
-+...+..+++..+..-|..++.+-|.+ .....+.+.++.. .|++.+++.-..-++...|....++...+.+|.
T Consensus 59 E~n~~~~K~d~~~~~~~~~~~~~llp~~~~~~a~~~~~~~s~~m~~~l~~~~~~~~E~~la~~~~p~i~~~Ll~r~~~y~ 138 (748)
T KOG4151|consen 59 EGNKLFQKRDYEGAMFRYDCAIKLLPKDHHVVATLRSNQASCYMQLGLGEYPKAIPECELALESQPRISKALLKRARKYE 138 (748)
T ss_pred hhhHHhhhhhhhccchhhhhhheeccccchhhhhHHHHHHHHHhhcCccchhhhcCchhhhhhccchHHHHHhhhhhHHH
Confidence 3666777777888877777777776633 2344455555554 567888888888888888888888888888888
Q ss_pred hcCcHHHHHHHHHHHHhcccc
Q psy9209 224 KLNETEAAADLFMEFVSKLDT 244 (349)
Q Consensus 224 ~~~~~~~A~~~~~~~~~~~~~ 244 (349)
..+..+-|.+.+.-.....|.
T Consensus 139 al~k~d~a~rdl~i~~~~~p~ 159 (748)
T KOG4151|consen 139 ALNKLDLAVRDLRIVEKMDPS 159 (748)
T ss_pred HHHHHHHHHHHHHHHhcCCCC
Confidence 888878787776666666665
No 472
>PF12753 Nro1: Nuclear pore complex subunit Nro1; InterPro: IPR024318 In fission yeast, Nro1 is a positive regulator of the stability of Sre1N, the sterol regulatory element-binding protein, which is an ER membrane-bound transcription factor that controls adaptation to low oxygen-growth []. In addition, the fission yeast Nro1 is a direct inhibitor of a protein that inhibits SreN1 degradation, Ofd1 (an oxoglutamate deoxygenase). The outcome of this reactivity is that Ofd1 acts as an oxygen sensor that regulates the binding of Nro1 to Ofd1 to control the stability of Sre1N []. This entry also represents ETT1, an Nro1 ortholog []. ETT1 is required for correct translation termination and probably involved in regulation of hypoxic gene expression in association TPA1 []. It inhibits replication of Brome mosaic virus [].; GO: 0005515 protein binding, 0005634 nucleus; PDB: 3QTM_B 3MSV_B 3QTN_B.
Probab=62.36 E-value=14 Score=31.49 Aligned_cols=46 Identities=15% Similarity=0.134 Sum_probs=23.4
Q ss_pred hHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCC------------HHHHHHHHHHHHhc
Q psy9209 126 TNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRL------------PYYGLYYYKQAHMV 173 (349)
Q Consensus 126 ~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~------------~~~A~~~~~~~~~~ 173 (349)
...|++++++|.. .+.|..|..+|.++..+|+ |.+|..++.+|-..
T Consensus 334 ~~~Al~yL~kA~d--~ddPetWv~vAEa~I~LGNL~d~eS~eQe~~Y~eAE~iL~kAN~a 391 (404)
T PF12753_consen 334 IKKALEYLKKAQD--EDDPETWVDVAEAMIDLGNLYDNESKEQEKAYKEAEKILKKANKA 391 (404)
T ss_dssp HHHHHHHHHHHHH--S--TTHHHHHHHHHHHHHHH-SSHHH-HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhc--cCChhHHHHHHHHHhhhhcccccchHHHHHHHHHHHHHHHHHhhc
Confidence 4455666666554 2344455555555554443 45566666666443
No 473
>PF04348 LppC: LppC putative lipoprotein; InterPro: IPR007443 This entry includes several bacterial outer membrane antigens, whose molecular function is unknown.; PDB: 3CKM_A.
Probab=62.27 E-value=2.5 Score=38.03 Aligned_cols=95 Identities=14% Similarity=0.013 Sum_probs=0.0
Q ss_pred HHHHHHhcCCCcchHHHHHHHHHHH--hhCcc-cHHHHHHHHHHHHhcCChHHHHHHHHHH--HHhCcc-cHHHHHHHHH
Q psy9209 79 LRSIAQKRQPDESSSQAVLYFQRAL--KLNPN-YLGVWTLLGHEYMEMKNTNAAIQCYRQA--IEINNL-DYRAWYGLGQ 152 (349)
Q Consensus 79 l~~~~~~~~~~~~~~~A~~~~~~~~--~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a--~~~~~~-~~~~~~~l~~ 152 (349)
+...+..+...|++..|...+.+.- .+.|. ........+.+....|+++.|+..+... ..+.+. ....+...+.
T Consensus 27 ~L~Aa~a~l~~g~~~~A~~ll~~l~~~~L~~~q~~~~~Ll~A~lal~~~~~~~Al~~L~~~~~~~l~~~~~~~~~~l~A~ 106 (536)
T PF04348_consen 27 LLLAARALLQEGDWAQAQALLNQLDPQQLSPSQQARYQLLRARLALAQGDPEQALSLLNAQDLWQLPPEQQARYHQLRAQ 106 (536)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHhCCCHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHhcCCHHHHHHHhccCCcccCCHHHHHHHHHHHHH
Confidence 4445667778899999999998765 23332 2345577788999999999999998742 112111 2345556788
Q ss_pred HHHHhCCHHHHHHHHHHHHhc
Q psy9209 153 TYEILRLPYYGLYYYKQAHMV 173 (349)
Q Consensus 153 ~~~~~~~~~~A~~~~~~~~~~ 173 (349)
++...|++-+|...+-.+-..
T Consensus 107 a~~~~~~~l~Aa~~~i~l~~l 127 (536)
T PF04348_consen 107 AYEQQGDPLAAARERIALDPL 127 (536)
T ss_dssp ---------------------
T ss_pred HHHhcCCHHHHHHHHHHHhhh
Confidence 888899888887765554443
No 474
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=61.43 E-value=28 Score=21.82 Aligned_cols=20 Identities=15% Similarity=0.214 Sum_probs=11.4
Q ss_pred HHHhcCChHHHHHHHHHHHH
Q psy9209 119 EYMEMKNTNAAIQCYRQAIE 138 (349)
Q Consensus 119 ~~~~~~~~~~A~~~~~~a~~ 138 (349)
-.-..|+|++|+.+|..+++
T Consensus 15 e~D~~g~y~eA~~~Y~~aie 34 (76)
T cd02681 15 QRDQEGRYSEAVFYYKEAAQ 34 (76)
T ss_pred HHHHccCHHHHHHHHHHHHH
Confidence 33445666666666666554
No 475
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=61.06 E-value=84 Score=25.12 Aligned_cols=55 Identities=13% Similarity=0.045 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHhcccccCCCCCCcchHHHHHHHHHHHHH-hCCHHHHHHHHHHHHc
Q psy9209 228 TEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLK-ANNLDTAYKCAQKCLQ 283 (349)
Q Consensus 228 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~a~~ 283 (349)
.+.|...|+.++.+.... ....+|.......+.+..|+. +++.++|....++++.
T Consensus 144 ~~~a~~aY~~A~e~a~~~-L~pt~PirLgLaLN~SVF~yEI~~~~~~A~~lAk~afd 199 (244)
T smart00101 144 AENTLVAYKSAQDIALAE-LPPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFD 199 (244)
T ss_pred HHHHHHHHHHHHHHHHcc-CCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 457888899888763220 011233333344455555444 6999999988777764
No 476
>smart00671 SEL1 Sel1-like repeats. These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
Probab=60.92 E-value=20 Score=17.84 Aligned_cols=29 Identities=17% Similarity=0.051 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHh----CCHHHHHHHHHHHHcc
Q psy9209 256 FAFKYLANHHLKA----NNLDTAYKCAQKCLQH 284 (349)
Q Consensus 256 ~~~~~l~~~~~~~----g~~~~A~~~~~~a~~~ 284 (349)
.+.+.+|.+|..- .+..+|..+++++.+.
T Consensus 2 ~a~~~lg~~~~~G~g~~~d~~~A~~~~~~Aa~~ 34 (36)
T smart00671 2 EAQYNLGQMYEYGLGVKKDLEKALEYYKKAAEL 34 (36)
T ss_pred HHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHc
Confidence 3456677766542 3778888888877653
No 477
>KOG2063|consensus
Probab=60.62 E-value=1.7e+02 Score=28.51 Aligned_cols=161 Identities=11% Similarity=0.032 Sum_probs=89.0
Q ss_pred HHHHHhcCCCcchHHHHHHHHHHHhhC----cccHHHHHHHHHHHHhcCCh--HHHHHHHHHHHHhCcccH---------
Q psy9209 80 RSIAQKRQPDESSSQAVLYFQRALKLN----PNYLGVWTLLGHEYMEMKNT--NAAIQCYRQAIEINNLDY--------- 144 (349)
Q Consensus 80 ~~~~~~~~~~~~~~~A~~~~~~~~~~~----~~~~~~~~~la~~~~~~~~~--~~A~~~~~~a~~~~~~~~--------- 144 (349)
..+...|...|++++|++.+.+...-. +.....+-..-..+...+.. +-..++-.=.+..+|...
T Consensus 508 ~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~~~~ 587 (877)
T KOG2063|consen 508 RELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTSEDK 587 (877)
T ss_pred HHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeeccCh
Confidence 345566777899999999999988733 33333333333333444433 333333333333333210
Q ss_pred ---HH-HHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-ChHHHHHHHHHHHHh--------hCHHHHHHH--HHHHHcc--
Q psy9209 145 ---RA-WYGLGQTYEILRLPYYGLYYYKQAHMVRPN-DPRMLTALGEAFEKQ--------EKISEAMKC--YNKSRAI-- 207 (349)
Q Consensus 145 ---~~-~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~--------~~~~~A~~~--~~~a~~~-- 207 (349)
.. -.....-|......+-++.+++.++..+.. +...+..+...|... ++-+++.+. .++....
T Consensus 588 ~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e~v~~~~~~~~kg~e~~E~~~rekl~~~l~ 667 (877)
T KOG2063|consen 588 QEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLEKVLEQASTDGKGEEAPETTVREKLLDFLE 667 (877)
T ss_pred hhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHHHHhhccCchhccccchhhhHHHHHHHHhh
Confidence 00 011122345667788889999999887665 344555555555432 122233333 2222211
Q ss_pred -----ccc-------cHHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Q psy9209 208 -----GDA-------DGKALFKLAKLYDKLNETEAAADLFMEFVS 240 (349)
Q Consensus 208 -----~~~-------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 240 (349)
+|+ ....+...+.++.++|+.++|+..|-..+.
T Consensus 668 ~s~~Y~p~~~L~~~~~~~l~ee~aill~rl~khe~aL~Iyv~~L~ 712 (877)
T KOG2063|consen 668 SSDLYDPQLLLERLNGDELYEERAILLGRLGKHEEALHIYVHELD 712 (877)
T ss_pred hhcccCcchhhhhccchhHHHHHHHHHhhhhhHHHHHHHHHHHhc
Confidence 222 144667778888889999999988876665
No 478
>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 [].; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.
Probab=60.31 E-value=63 Score=29.16 Aligned_cols=50 Identities=16% Similarity=0.276 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHhccccCCCCCcchhHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q psy9209 13 EAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCL 66 (349)
Q Consensus 13 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l 66 (349)
..++.+|.++|........+.+- +-|..+|-.+++.+++.+|+..+-.+-
T Consensus 296 ~~~~~l~~~AI~sa~~~Y~n~Hv----YPYty~gg~~yR~~~~~eA~~~Wa~aa 345 (618)
T PF05053_consen 296 PTPLELFNEAISSARTYYNNHHV----YPYTYLGGYYYRHKRYREALRSWAEAA 345 (618)
T ss_dssp --HHHHHHHHHHHHHHHCTT--S----HHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhcCCcc----ccceehhhHHHHHHHHHHHHHHHHHHH
Confidence 45677777777544444433322 468889999999999999998887764
No 479
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=59.87 E-value=25 Score=22.02 Aligned_cols=29 Identities=17% Similarity=0.087 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHcc
Q psy9209 256 FAFKYLANHHLKANNLDTAYKCAQKCLQH 284 (349)
Q Consensus 256 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 284 (349)
..+...|.-+-..|++++|+.+|..+++.
T Consensus 7 i~~a~~Ave~D~~g~y~eA~~~Y~~aie~ 35 (76)
T cd02681 7 VQFARLAVQRDQEGRYSEAVFYYKEAAQL 35 (76)
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 33444555556668888888888888764
No 480
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=58.17 E-value=43 Score=20.88 Aligned_cols=13 Identities=8% Similarity=0.071 Sum_probs=5.0
Q ss_pred CCHHHHHHHHHHH
Q psy9209 158 RLPYYGLYYYKQA 170 (349)
Q Consensus 158 ~~~~~A~~~~~~~ 170 (349)
|++++|..+|..+
T Consensus 20 ~~y~eA~~~Y~~~ 32 (75)
T cd02677 20 GDYEAAFEFYRAG 32 (75)
T ss_pred hhHHHHHHHHHHH
Confidence 3333333333333
No 481
>KOG4521|consensus
Probab=58.14 E-value=2.1e+02 Score=28.79 Aligned_cols=163 Identities=15% Similarity=0.075 Sum_probs=96.9
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHhCcc---------------------------c--HHHHHHHHHHHHHhCCHH
Q psy9209 111 GVWTLLGHEYMEMKNTNAAIQCYRQAIEINNL---------------------------D--YRAWYGLGQTYEILRLPY 161 (349)
Q Consensus 111 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~---------------------------~--~~~~~~l~~~~~~~~~~~ 161 (349)
...+.+|.+|...|...+|+.+|.+|..-... . ...|....+++...+-.+
T Consensus 921 v~rfmlg~~yl~tge~~kAl~cF~~a~Sg~ge~~aL~~lv~~~~p~~~sv~dG~t~s~e~t~lhYYlkv~rlle~hn~~E 1000 (1480)
T KOG4521|consen 921 VIRFMLGIAYLGTGEPVKALNCFQSALSGFGEGNALRKLVYFLLPKRFSVADGKTPSEELTALHYYLKVVRLLEEHNHAE 1000 (1480)
T ss_pred HHHHhhheeeecCCchHHHHHHHHHHhhccccHHHHHHHHHHhcCCCCchhcCCCCCchHHHHHHHHHHHHHHHHhccHH
Confidence 34577888899999999999999988653110 0 112333445566677777
Q ss_pred HHHHHHHHHHhcCCCC----hHHHHHHHHHHHHhhCHHHHHHHHHHHHcccccc---HHHHHHHHHHHHhcCcHH-----
Q psy9209 162 YGLYYYKQAHMVRPND----PRMLTALGEAFEKQEKISEAMKCYNKSRAIGDAD---GKALFKLAKLYDKLNETE----- 229 (349)
Q Consensus 162 ~A~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~~~~l~~~~~~~~~~~----- 229 (349)
.+.+...+|++.-|++ +.....+-.-+..+|.+-+|...+ -.+|+. ...+..+..++...|+++
T Consensus 1001 ~vcQlA~~AIe~l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai----~~npdserrrdcLRqlvivLfecg~l~~L~~f 1076 (1480)
T KOG4521|consen 1001 EVCQLAVKAIENLPDDNPSVALISTTVFNHHLDLGHWFQAYKAI----LRNPDSERRRDCLRQLVIVLFECGELEALATF 1076 (1480)
T ss_pred HHHHHHHHHHHhCCCcchhHHHHHHHHHHhhhchhhHHHHHHHH----HcCCcHHHHHHHHHHHHHHHHhccchHHHhhC
Confidence 8888877777764443 234445555566778887776543 334542 234455666666666543
Q ss_pred -------HHHH-HHHHHHhcccccCCCCCCcchHHHHHHHHHHHHHhCCHHHHHH-HHHHHHccc
Q psy9209 230 -------AAAD-LFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYK-CAQKCLQHE 285 (349)
Q Consensus 230 -------~A~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~-~~~~a~~~~ 285 (349)
+-.. .++.+-...|. .....|..|=..+...+++.+|-. .|+.+..+.
T Consensus 1077 pfigl~~eve~~l~esaaRs~~~--------mk~nyYelLYAfh~~RhN~RkaatvMYEyamrl~ 1133 (1480)
T KOG4521|consen 1077 PFIGLEQEVEDFLRESAARSSPS--------MKKNYYELLYAFHVARHNFRKAATVMYEYAMRLE 1133 (1480)
T ss_pred CccchHHHHHHHHHHHHhhcCcc--------ccccHHHHHHHHHHhhcchhHHHHHHHHHHHHhc
Confidence 2223 23333333332 134555556667778888887754 566666654
No 482
>KOG1920|consensus
Probab=57.71 E-value=2.1e+02 Score=28.73 Aligned_cols=25 Identities=16% Similarity=0.279 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHhhCHHHHHHHHHHH
Q psy9209 180 MLTALGEAFEKQEKISEAMKCYNKS 204 (349)
Q Consensus 180 ~~~~l~~~~~~~~~~~~A~~~~~~a 204 (349)
++...|.-+...+.+++|.-.|+.+
T Consensus 941 i~~~ya~hL~~~~~~~~Aal~Ye~~ 965 (1265)
T KOG1920|consen 941 IYEAYADHLREELMSDEAALMYERC 965 (1265)
T ss_pred HHHHHHHHHHHhccccHHHHHHHHh
Confidence 3444455555555555555555544
No 483
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=57.26 E-value=1.3e+02 Score=26.00 Aligned_cols=56 Identities=11% Similarity=-0.155 Sum_probs=40.6
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHhCcc-----cHHHHHHHHHH--HHHhCCHHHHHHHHHH
Q psy9209 114 TLLGHEYMEMKNTNAAIQCYRQAIEINNL-----DYRAWYGLGQT--YEILRLPYYGLYYYKQ 169 (349)
Q Consensus 114 ~~la~~~~~~~~~~~A~~~~~~a~~~~~~-----~~~~~~~l~~~--~~~~~~~~~A~~~~~~ 169 (349)
...+..+.+.++|..|...|..++...+. ....+..+... ++..-++++|.+.+++
T Consensus 134 ~~~~r~l~n~~dy~aA~~~~~~L~~r~l~~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~~ 196 (380)
T TIGR02710 134 QGYARRAINAFDYLFAHARLETLLRRLLSAVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLND 196 (380)
T ss_pred HHHHHHHHHhcChHHHHHHHHHHHhcccChhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHhh
Confidence 33556788999999999999999986432 23344455444 4567788999999986
No 484
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=57.07 E-value=25 Score=17.70 Aligned_cols=27 Identities=19% Similarity=0.188 Sum_probs=20.8
Q ss_pred cHHHHHHHHHHHHhcccccCCCCCCcchHHHHHHHHH
Q psy9209 227 ETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLAN 263 (349)
Q Consensus 227 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 263 (349)
.++.|..+|++.+...|. +..|...|.
T Consensus 2 E~dRAR~IyeR~v~~hp~----------~k~WikyAk 28 (32)
T PF02184_consen 2 EFDRARSIYERFVLVHPE----------VKNWIKYAK 28 (32)
T ss_pred hHHHHHHHHHHHHHhCCC----------chHHHHHHH
Confidence 468899999999988875 666766654
No 485
>TIGR03362 VI_chp_7 type VI secretion-associated protein, VC_A0119 family. This protein family is one of two related families in type VI secretion systems that contain an ImpA-related N-terminal domain (pfam06812).
Probab=55.69 E-value=1.2e+02 Score=25.21 Aligned_cols=149 Identities=14% Similarity=0.080 Sum_probs=91.6
Q ss_pred CCcchHHHHHHHHHHHhhCcccHHHHHHHHHHHHhcCChHHHHHHHHHHHH----hCcccHHHHHHHHHHHHHhCCH---
Q psy9209 88 PDESSSQAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIE----INNLDYRAWYGLGQTYEILRLP--- 160 (349)
Q Consensus 88 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~----~~~~~~~~~~~l~~~~~~~~~~--- 160 (349)
..+++.+.++..++.+..+|--.+.++..+.+..++| ++.+.......+. .-|.-. .+.+..|..
T Consensus 111 ~~~~~~~Ll~~~E~sl~~~pfWLDgq~~~~qal~~lG-~~~~a~aI~~el~~fL~RlP~L~-------~L~F~DGtPFad 182 (301)
T TIGR03362 111 AQADWAALLQRVEQSLSLAPFWLDGQRLSAQALERLG-YAAVAQAIRDELAAFLERLPGLL-------ELKFSDGTPFAD 182 (301)
T ss_pred hCCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHhCcChh-------hcccCCCCCCCC
Confidence 3467788888888888888888888888899999988 4555555544433 223211 111111111
Q ss_pred HHHHHHHHHHHhc-----------CC--CChHHHHHHHHHHHHhhCHHHHHHHHHHHHccccc---cHHHHHHHHHHHHh
Q psy9209 161 YYGLYYYKQAHMV-----------RP--NDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDA---DGKALFKLAKLYDK 224 (349)
Q Consensus 161 ~~A~~~~~~~~~~-----------~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~---~~~~~~~l~~~~~~ 224 (349)
++...++...... .+ .+......-+..+...+..+.|+..++..+...+. .......++.++..
T Consensus 183 ~~T~~WL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eA~~l~~~~gl~~Al~~L~~~~~~~~s~R~rf~~rL~~A~l~~~ 262 (301)
T TIGR03362 183 DETRAWLAQHATRSNAASVAPVAEVGEESDWEELREEARALAAEGGLEAALQRLQQRLAQAREPRERFHWRLLLARLLEQ 262 (301)
T ss_pred HHHHHHHHhcccccccccccccccCcccccHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCCChHHHHHHHHHHHHHHHH
Confidence 1112222111000 01 11122233466777889999999999986554222 23445678999999
Q ss_pred cCcHHHHHHHHHHHHhcccc
Q psy9209 225 LNETEAAADLFMEFVSKLDT 244 (349)
Q Consensus 225 ~~~~~~A~~~~~~~~~~~~~ 244 (349)
.|..+-|...|+...+....
T Consensus 263 ~g~~~lA~~ll~~L~~~~~~ 282 (301)
T TIGR03362 263 AGKAELAQQLYAALDQQIQQ 282 (301)
T ss_pred cCCHHHHHHHHHHHHHHHHh
Confidence 99999999999988775443
No 486
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=55.10 E-value=47 Score=25.06 Aligned_cols=52 Identities=10% Similarity=0.183 Sum_probs=0.0
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHcccCChHHHHHHHHHHHHHcCCCCCchhHH
Q psy9209 260 YLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDESSSQPM 312 (349)
Q Consensus 260 ~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 312 (349)
....++.+.|.+++|.+.+++... +|++......|..+-.....+..-+..|
T Consensus 116 ~aV~VCm~~g~Fk~A~eiLkr~~~-d~~~~~~r~kL~~II~~Kd~~h~~lqnF 167 (200)
T cd00280 116 QAVAVCMENGEFKKAEEVLKRLFS-DPESQKLRMKLLMIIREKDPAHPVLQNF 167 (200)
T ss_pred HHHHHHHhcCchHHHHHHHHHHhc-CCCchhHHHHHHHHHHccccccHHHHhc
No 487
>PF14929 TAF1_subA: TAF RNA Polymerase I subunit A
Probab=54.84 E-value=1.7e+02 Score=26.76 Aligned_cols=156 Identities=13% Similarity=0.035 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhh--CHHHHHHHHHH
Q psy9209 126 TNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQE--KISEAMKCYNK 203 (349)
Q Consensus 126 ~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~A~~~~~~ 203 (349)
|..|.++++.++.-.|.- ++...|+.++|+...++... +..........+.++...+ .-..=..+|+.
T Consensus 300 yk~a~KYLR~al~s~p~v---------lLl~~~~l~eal~~~e~~c~-~~~~~lpi~~~~~lle~~d~~~~~~l~~~~e~ 369 (547)
T PF14929_consen 300 YKYAVKYLRLALQSNPPV---------LLLIGGRLKEALNELEKFCI-SSTCALPIRLRAHLLEYFDQNNSSVLSSCLED 369 (547)
T ss_pred HHHHHHHHHHHhcCCCCe---------EEeccccHHHHHHHHHHhcc-CCCccchHHHHHHHHHHhCcccHHHHHHHHHH
Q ss_pred HHccccccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCCCCCcchHHHHHHHHHHHHH-hCCHHHHHHHHHHHH
Q psy9209 204 SRAIGDADGKALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLK-ANNLDTAYKCAQKCL 282 (349)
Q Consensus 204 a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~a~ 282 (349)
+++.+|........+...+...-...+=.+...--+...|. ..+|..++.++.+ .++++.-.+..++++
T Consensus 370 ~~~~~P~~~~~le~l~~~~~~~~~~~~Lle~i~~~l~~~~s----------~~iwle~~~~~l~~~~~~~~~~e~~~~~l 439 (547)
T PF14929_consen 370 CLKKDPTMSYSLERLILLHQKDYSAEQLLEMIALHLDLVPS----------HPIWLEFVSCFLKNPSRFEDKEEDHKSAL 439 (547)
T ss_pred HhcCCCcHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhcCCC----------chHHHHHHHHHHhccccccccHHHHHHHH
Q ss_pred cc---------cCChHHHHHHHHHHHHH
Q psy9209 283 QH---------EETAEEAKSLLRSIAQK 301 (349)
Q Consensus 283 ~~---------~~~~~~~~~~l~~~~~~ 301 (349)
++ ...+..+|..+......
T Consensus 440 ~vlf~~LDf~~~r~n~~aW~~l~~~l~~ 467 (547)
T PF14929_consen 440 KVLFEFLDFAGWRKNIQAWKLLAKKLPK 467 (547)
T ss_pred hcchhcccccccccccHHHHHHHHHhhH
No 488
>COG5536 BET4 Protein prenyltransferase, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=53.99 E-value=1.2e+02 Score=24.76 Aligned_cols=184 Identities=9% Similarity=0.026 Sum_probs=115.6
Q ss_pred HHHHHHHHHHhhhhhchHHHHHHHHHHHHh-cC----CCcchHHHHHHHHHHHhhCcccHHHHHHHHHHHHhc--CChHH
Q psy9209 56 DTAYKCAQKCLQHEETAEEAKSLLRSIAQK-RQ----PDESSSQAVLYFQRALKLNPNYLGVWTLLGHEYMEM--KNTNA 128 (349)
Q Consensus 56 ~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~-~~----~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~--~~~~~ 128 (349)
..|++.-...+..+|..-..|..-..+... .. ..--++.-+.++..+++.+|.+...|...-.++..- .++..
T Consensus 49 ~~aLklt~elid~npe~ytiwnyr~~I~~h~~~~sedk~~~ldneld~~~~~lk~~PK~YqiW~HR~~~Le~~p~~~~~r 128 (328)
T COG5536 49 VRALKLTQELIDKNPEFYTIWNYRFSILKHVQMVSEDKEHLLDNELDFLDEALKDNPKNYQIWHHRQWMLELFPKPSWGR 128 (328)
T ss_pred HHHHHHhHHHHhhCHHHHHHHhhHHHHHhhhhhhcccchhhhhcHHHHHHHHHhcCCchhhhhHHHHHHHHhCCCcccch
Confidence 356666666666677766665544433222 00 112245567778889999999999988777776554 66788
Q ss_pred HHHHHHHHHHhCcccHHHHHHHHHHH------HHhCCHHHHHHHHHHHHhcCCCChHHHHHH---HHHHHHhhC------
Q psy9209 129 AIQCYRQAIEINNLDYRAWYGLGQTY------EILRLPYYGLYYYKQAHMVRPNDPRMLTAL---GEAFEKQEK------ 193 (349)
Q Consensus 129 A~~~~~~a~~~~~~~~~~~~~l~~~~------~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l---~~~~~~~~~------ 193 (349)
-....+++++.++.+..+|...-.+. ..-..+..-.++-..++..++.+..+|... -......|+
T Consensus 129 El~itkklld~DsrNyH~W~YR~~vl~~ie~~~N~S~~k~e~eytt~~I~tdi~N~SaW~~r~~~~~~~~~~~~visqk~ 208 (328)
T COG5536 129 ELFITKKLLDSDSRNYHVWSYRRWVLRTIEDLFNFSDLKHELEYTTSLIETDIYNNSAWHHRYIWIERRFNRGDVISQKY 208 (328)
T ss_pred hHHHHHHHhcccccccceeeeEeeeeecchhhccchhHHHHHHhHHHHHhhCCCChHHHHHHHHHHHHHHhhcccchHHH
Confidence 88888999999998876665433333 333445555777778888899999888766 333333443
Q ss_pred HHHHHHHHHHHHccccccHHHHHHHHHHH----HhcCcHHHHHHHHHHHH
Q psy9209 194 ISEAMKCYNKSRAIGDADGKALFKLAKLY----DKLNETEAAADLFMEFV 239 (349)
Q Consensus 194 ~~~A~~~~~~a~~~~~~~~~~~~~l~~~~----~~~~~~~~A~~~~~~~~ 239 (349)
+++-+++.-.++-.+|++..+|..+-.+. ...-.+.+-++.+.+-+
T Consensus 209 l~~eL~~i~~~if~~p~~~S~w~y~r~~~~~~~~d~~~~~e~v~~L~k~~ 258 (328)
T COG5536 209 LEKELEYIFDKIFTDPDNQSVWGYLRGVSSEFATDIVMIGEKVEDLGKYI 258 (328)
T ss_pred HHHHHHHHHhhhhcCccccchhhHHHHHhccchHHHHHHHHHHHHHHhhh
Confidence 45556666666677888877776543332 22223455555554433
No 489
>PF13226 DUF4034: Domain of unknown function (DUF4034)
Probab=53.34 E-value=1.2e+02 Score=24.72 Aligned_cols=36 Identities=11% Similarity=0.121 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHccccccHHHHHHHHHHHHhcCcHH
Q psy9209 194 ISEAMKCYNKSRAIGDADGKALFKLAKLYDKLNETE 229 (349)
Q Consensus 194 ~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~ 229 (349)
.+.|...+.+++.++|....+...+..+-...|..+
T Consensus 115 ~d~A~~~ll~A~~l~pr~~~A~~~m~~~s~~fgeP~ 150 (277)
T PF13226_consen 115 CDQAVAALLKAIELSPRPVAAAIGMINISAYFGEPD 150 (277)
T ss_pred HHHHHHHHHHHHhcCCCchHHHHHHHHHHhhcCCch
Confidence 578899999999999999998888888887777765
No 490
>COG3014 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=52.18 E-value=1.5e+02 Score=25.13 Aligned_cols=28 Identities=18% Similarity=0.170 Sum_probs=21.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHh
Q psy9209 112 VWTLLGHEYMEMKNTNAAIQCYRQAIEI 139 (349)
Q Consensus 112 ~~~~la~~~~~~~~~~~A~~~~~~a~~~ 139 (349)
..+.+|.-|+..++++.|.--|+++...
T Consensus 127 ~n~YkaLNYm~~nD~~~ArVEfnRan~r 154 (449)
T COG3014 127 INYYKALNYMLLNDSAKARVEFNRANER 154 (449)
T ss_pred HHHHHHhhHHHhcchhhhHHHHHHHHHH
Confidence 3466777888888888888888887764
No 491
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=52.09 E-value=68 Score=21.33 Aligned_cols=39 Identities=5% Similarity=-0.295 Sum_probs=32.4
Q ss_pred hHHHHHHHHHHHHHhCCHHHHHHHHHHHHcccCChHHHH
Q psy9209 254 GFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAK 292 (349)
Q Consensus 254 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 292 (349)
.+-.+..||.+|...|+.+.|..-|+.--.+.|.+....
T Consensus 71 pPG~HAhLGlLys~~G~~e~a~~eFetEKalFPES~~fm 109 (121)
T COG4259 71 PPGYHAHLGLLYSNSGKDEQAVREFETEKALFPESGVFM 109 (121)
T ss_pred CCcHHHHHHHHHhhcCChHHHHHHHHHhhhhCccchhHH
Confidence 466788899999999999999999998888888775543
No 492
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=51.39 E-value=49 Score=20.52 Aligned_cols=17 Identities=18% Similarity=0.366 Sum_probs=9.2
Q ss_pred hhCcHHHHHHHHHHHHH
Q psy9209 8 KLNETEAAADLFMEFVS 24 (349)
Q Consensus 8 ~~g~~~~A~~~~~~~~~ 24 (349)
..|++++|+..|.++++
T Consensus 20 ~~g~~~eAl~~Y~~a~e 36 (77)
T smart00745 20 EAGDYEEALELYKKAIE 36 (77)
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 44555555555555553
No 493
>PF10938 YfdX: YfdX protein; InterPro: IPR021236 YfdX is a protein found in Proteobacteria of unknown function. The protein coding for this gene is regulated by EvgA in Escherichia coli []. ; PDB: 3DZA_C.
Probab=50.86 E-value=97 Score=22.71 Aligned_cols=61 Identities=11% Similarity=-0.048 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHcc-------cc-ccHHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Q psy9209 180 MLTALGEAFEKQEKISEAMKCYNKSRAI-------GD-ADGKALFKLAKLYDKLNETEAAADLFMEFVS 240 (349)
Q Consensus 180 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~-------~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 240 (349)
.....+.-..+.|+...|.+.++.+-.- -| .....-...+..+...|++.+|...+..++.
T Consensus 77 ~ai~~a~~~l~~g~~~~A~~~L~~~~~ei~~~~~~lPL~~~~~av~~A~~ll~~~k~~eA~~aL~~A~~ 145 (155)
T PF10938_consen 77 AAIKTANELLKKGDKQAAREILKLAGSEIDITTALLPLAQTPAAVKQAAALLDEGKYYEANAALKQALD 145 (155)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHTT-EEEEEEEEEEHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhcccceeeeeeCCHHhhHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 3455666677788888888877665321 11 1123345566677788888888888877764
No 494
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=50.42 E-value=55 Score=19.78 Aligned_cols=24 Identities=33% Similarity=0.347 Sum_probs=14.3
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHH
Q psy9209 115 LLGHEYMEMKNTNAAIQCYRQAIE 138 (349)
Q Consensus 115 ~la~~~~~~~~~~~A~~~~~~a~~ 138 (349)
..|.-.-..|++++|+.+|.++++
T Consensus 10 ~~Av~~D~~g~~~~A~~~Y~~ai~ 33 (69)
T PF04212_consen 10 KKAVEADEAGNYEEALELYKEAIE 33 (69)
T ss_dssp HHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH
Confidence 334444456677777776666655
No 495
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=49.97 E-value=79 Score=21.45 Aligned_cols=74 Identities=8% Similarity=-0.300 Sum_probs=30.0
Q ss_pred chHHHHHHHHHHHhhCcccHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHHHHHHHHHH
Q psy9209 91 SSSQAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQ 169 (349)
Q Consensus 91 ~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 169 (349)
..++|..+..-.-........+.......+.++|+|++| +...... ..++.--.++.+-.+.|--+++...+.+
T Consensus 21 cH~EA~tIa~wL~~~~~~~E~v~lIr~~sLmNrG~Yq~A---Ll~~~~~--~~pdL~p~~AL~a~klGL~~~~e~~l~r 94 (116)
T PF09477_consen 21 CHQEANTIADWLEQEGEMEEVVALIRLSSLMNRGDYQEA---LLLPQCH--CYPDLEPWAALCAWKLGLASALESRLTR 94 (116)
T ss_dssp -HHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHTT-HHHH---HHHHTTS----GGGHHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhhHHHHHH---HHhcccC--CCccHHHHHHHHHHhhccHHHHHHHHHH
Confidence 445555444433322222223334445556666666666 1111111 1122222233444555555555555553
No 496
>PRK12798 chemotaxis protein; Reviewed
Probab=49.00 E-value=1.8e+02 Score=25.35 Aligned_cols=187 Identities=11% Similarity=-0.040 Sum_probs=122.7
Q ss_pred CcchHHHHHHHHHHHhhC-cccHHHHHHH-HHHHHhcCChHHHHHHHHHHHHhCccc---HHHHHHHHHHHHHhCCHHHH
Q psy9209 89 DESSSQAVLYFQRALKLN-PNYLGVWTLL-GHEYMEMKNTNAAIQCYRQAIEINNLD---YRAWYGLGQTYEILRLPYYG 163 (349)
Q Consensus 89 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~l-a~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~~~~l~~~~~~~~~~~~A 163 (349)
.|+..++.+.+..+-... |.....+..| .-......+..+|++.|+.+--..|.. ..++..-..+....|+.+++
T Consensus 125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRLlaPGTLvEEAALRRsi~la~~~g~~~rf 204 (421)
T PRK12798 125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARLLAPGTLVEEAALRRSLFIAAQLGDADKF 204 (421)
T ss_pred cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHHhCCchHHHHHHHHHhhHHHHhcCcHHHH
Confidence 488888888776543221 2222233333 334456678999999999998888875 22344444556788999999
Q ss_pred HHHHHHHHhcCCCChHH---HHHHHHHHHHhhCHHHHHHHHHHHHcc-ccc-cHHHHHHHHHHHHhcCcHHHHHHHHHHH
Q psy9209 164 LYYYKQAHMVRPNDPRM---LTALGEAFEKQEKISEAMKCYNKSRAI-GDA-DGKALFKLAKLYDKLNETEAAADLFMEF 238 (349)
Q Consensus 164 ~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~A~~~~~~a~~~-~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 238 (349)
..+-.+-+.....++.+ +...+......++-.. ...+...+.. +|. ...+|..++..-.-.|+.+-|.-.-+++
T Consensus 205 ~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~-~~~l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~A 283 (421)
T PRK12798 205 EALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIR-DARLVEILSFMDPERQRELYLRIARAALIDGKTELARFASERA 283 (421)
T ss_pred HHHHHHHHHHhccCchHHHHHHHHHHHHHhcccccc-HHHHHHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHHHHH
Confidence 88888888877766643 3333444444432221 2234455544 433 4668889999999999999999999999
Q ss_pred HhcccccCCCCCCcchHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q psy9209 239 VSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKC 281 (349)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 281 (349)
+.+... .......+.++-+..-.-..++++|+..+...
T Consensus 284 ~~L~~~-----~~~~~~ra~LY~aaa~v~s~~~~~al~~L~~I 321 (421)
T PRK12798 284 LKLADP-----DSADAARARLYRGAALVASDDAESALEELSQI 321 (421)
T ss_pred HHhccC-----CCcchHHHHHHHHHHccCcccHHHHHHHHhcC
Confidence 998754 23334555566666666667788888777664
No 497
>PF08238 Sel1: Sel1 repeat; InterPro: IPR006597 Sel1-like repeats are tetratricopeptide repeat sequences originally identified in a Caenorhabditis elegans receptor molecule which is a key negative regulator of the Notch pathway []. Mammalian homologues have since been identified although these mainly pancreatic proteins have yet to have a function assigned.; PDB: 2XM6_A 3RJV_A 1OUV_A 1KLX_A.
Probab=48.83 E-value=37 Score=17.25 Aligned_cols=10 Identities=30% Similarity=0.550 Sum_probs=3.8
Q ss_pred HHHHHHHHHH
Q psy9209 127 NAAIQCYRQA 136 (349)
Q Consensus 127 ~~A~~~~~~a 136 (349)
++|..+|+++
T Consensus 25 ~~A~~~~~~A 34 (39)
T PF08238_consen 25 EKAFKWYEKA 34 (39)
T ss_dssp HHHHHHHHHH
T ss_pred cchHHHHHHH
Confidence 3333333333
No 498
>PRK09687 putative lyase; Provisional
Probab=48.59 E-value=1.5e+02 Score=24.30 Aligned_cols=187 Identities=9% Similarity=-0.029 Sum_probs=101.3
Q ss_pred HHHHHHhcCC----HHHHHHHHHHHhhhhhchHHHHHHHHHHHHhcCCCc-chHHHHHHHHHHHhhCcccHHHHHHHHHH
Q psy9209 45 LANHHLKANN----LDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDE-SSSQAVLYFQRALKLNPNYLGVWTLLGHE 119 (349)
Q Consensus 45 l~~~~~~~~~----~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 119 (349)
-+.++.+.|+ ..++...+...+..+|+...-......++......- ....+...+..++. ++ ++.+....+..
T Consensus 74 A~~aLg~lg~~~~~~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~-D~-~~~VR~~a~~a 151 (280)
T PRK09687 74 GADILSQLGMAKRCQDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLYSPKIVEQSQITAF-DK-STNVRFAVAFA 151 (280)
T ss_pred HHHHHHhcCCCccchHHHHHHHHHHHhcCCCHHHHHHHHHHHhcccccccccchHHHHHHHHHhh-CC-CHHHHHHHHHH
Confidence 3444444554 245666666665555553332233333333211000 11233444333332 22 45566666666
Q ss_pred HHhcCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhC-CHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhCHHHHH
Q psy9209 120 YMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILR-LPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAM 198 (349)
Q Consensus 120 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 198 (349)
+...++ ++|+..+..+++- .++.+...-+..+...+ ....+...+..++. ..+..+...-...+.+.|+ ..|+
T Consensus 152 Lg~~~~-~~ai~~L~~~L~d--~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~--D~~~~VR~~A~~aLg~~~~-~~av 225 (280)
T PRK09687 152 LSVIND-EAAIPLLINLLKD--PNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ--DKNEEIRIEAIIGLALRKD-KRVL 225 (280)
T ss_pred HhccCC-HHHHHHHHHHhcC--CCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc--CCChHHHHHHHHHHHccCC-hhHH
Confidence 666665 6788888888762 23334433333333332 24567777777773 2345555555566666666 5788
Q ss_pred HHHHHHHccccccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccc
Q psy9209 199 KCYNKSRAIGDADGKALFKLAKLYDKLNETEAAADLFMEFVSKLDT 244 (349)
Q Consensus 199 ~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 244 (349)
..+-+.++... .....+..+...|.. +|+..+.+++..+++
T Consensus 226 ~~Li~~L~~~~----~~~~a~~ALg~ig~~-~a~p~L~~l~~~~~d 266 (280)
T PRK09687 226 SVLIKELKKGT----VGDLIIEAAGELGDK-TLLPVLDTLLYKFDD 266 (280)
T ss_pred HHHHHHHcCCc----hHHHHHHHHHhcCCH-hHHHHHHHHHhhCCC
Confidence 88888877532 344556666677774 788888888876664
No 499
>KOG4056|consensus
Probab=48.27 E-value=53 Score=23.26 Aligned_cols=34 Identities=9% Similarity=-0.000 Sum_probs=28.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhhhhchHHH
Q psy9209 42 FKYLANHHLKANNLDTAYKCAQKCLQHEETAEEA 75 (349)
Q Consensus 42 ~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~ 75 (349)
-..+|+.++.+|+++++..++-.++...|.....
T Consensus 84 qv~lGE~L~~qg~~e~ga~h~~nAi~vcgqpaqL 117 (143)
T KOG4056|consen 84 QVQLGEELLAQGNEEEGAEHLANAIVVCGQPAQL 117 (143)
T ss_pred HHHhHHHHHHccCHHHHHHHHHHHHhhcCCHHHH
Confidence 3468999999999999999999998887776554
No 500
>KOG2561|consensus
Probab=47.83 E-value=1.4e+02 Score=26.18 Aligned_cols=29 Identities=10% Similarity=0.006 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHc
Q psy9209 255 FFAFKYLANHHLKANNLDTAYKCAQKCLQ 283 (349)
Q Consensus 255 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 283 (349)
...+..-|.+.+.+|+-++|.++++.+..
T Consensus 267 lRL~LLQGV~~yHqg~~deAye~le~a~~ 295 (568)
T KOG2561|consen 267 LRLELLQGVVAYHQGQRDEAYEALESAHA 295 (568)
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 34455669999999999999999998853
Done!