RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy9209
(349 letters)
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin
ligase; 2.60A {Schizosaccharomyces pombe}
Length = 597
Score = 124 bits (314), Expect = 6e-32
Identities = 35/209 (16%), Positives = 64/209 (30%), Gaps = 16/209 (7%)
Query: 94 QAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQT 153
+A YF ++ ++P + W H + + AI Y A + + + LG
Sbjct: 391 EARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQ 450
Query: 154 YEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGK 213
+ L Y + ++ + DP +L LG + + A+ + + +
Sbjct: 451 HMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQS 510
Query: 214 -------ALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHL 266
L Y KL +AA D + + A +A +L
Sbjct: 511 NEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDAN---------VHTAIALVYL 561
Query: 267 KANNLDTAYKCAQKCLQHEETAEEAKSLL 295
A + L A LL
Sbjct: 562 HKKIPGLAITHLHESLAISPNEIMASDLL 590
Score = 81.8 bits (202), Expect = 3e-17
Identities = 25/138 (18%), Positives = 49/138 (35%), Gaps = 7/138 (5%)
Query: 94 QAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNL-------DYRA 146
A Y Q + L + LG + AI ++ A+ +
Sbjct: 459 LANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAAT 518
Query: 147 WYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRA 206
W LG Y L++ + Q ++ ND + TA+ + ++ A+ ++S A
Sbjct: 519 WANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLA 578
Query: 207 IGDADGKALFKLAKLYDK 224
I + A L + ++
Sbjct: 579 ISPNEIMASDLLKRALEE 596
Score = 77.6 bits (191), Expect = 7e-16
Identities = 34/280 (12%), Positives = 78/280 (27%), Gaps = 18/280 (6%)
Query: 4 KLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQ 63
++Y L+ + A + + E + AF L ++HL + +
Sbjct: 208 QVYTNLSNFDRAKECYKEALMVDAKCYE---------AFDQLVSNHLLTADEEWDLVLKL 258
Query: 64 KCLQHEETAEEAKSLLRSIAQKRQPDESSSQAVLYFQRALKLNPNYLGVWTLLGHEYMEM 123
+ + L + + E + + ++ +
Sbjct: 259 NYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVR 318
Query: 124 KNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTA 183
+ + +EI+ + + + P A
Sbjct: 319 SRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLA 378
Query: 184 LGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKLAKLYDKLNETEAAADLFMEFVSKLD 243
+G + KISEA + ++KS + G A A + E + A + ++L
Sbjct: 379 VGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAY-TTAARLF 437
Query: 244 TFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQ 283
+ +L H++ N+ A + Q
Sbjct: 438 -----QGT---HLPYLFLGMQHMQLGNILLANEYLQSSYA 469
Score = 70.3 bits (172), Expect = 2e-13
Identities = 31/157 (19%), Positives = 60/157 (38%), Gaps = 10/157 (6%)
Query: 41 AFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDESSSQAVLYFQ 100
+ +L H++ N+ A + Q + + L +A + A+ +FQ
Sbjct: 443 PYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNK---SDMQTAINHFQ 499
Query: 101 RALKL-------NPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQT 153
AL L + W LGH Y ++K +AAI Q + ++ D +
Sbjct: 500 NALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALV 559
Query: 154 YEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEK 190
Y ++P + + ++ + PN+ L A E+
Sbjct: 560 YLHKKIPGLAITHLHESLAISPNEIMASDLLKRALEE 596
Score = 67.9 bits (166), Expect = 9e-13
Identities = 39/280 (13%), Positives = 79/280 (28%), Gaps = 51/280 (18%)
Query: 41 AFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDESSSQAVLYFQ 100
A L L + Y A CL + A +L + DE ++ +L
Sbjct: 136 AKCLLTKEDLYNRSSACRYLAAF-CLVKLYDWQGALNL-LGETNPFRKDEKNANKLLMQD 193
Query: 101 RALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRL- 159
+KL + + L G Y + N + A +CY++A+ ++ Y A+ L + +
Sbjct: 194 GGIKLEAS---MCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADE 250
Query: 160 ------------------PYYGLYY------------------YKQAHMVRPNDPRMLTA 183
+ Y Y + +L
Sbjct: 251 EWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLC 310
Query: 184 LGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKLAKLYDKLNETEAAADLFMEFVSKLD 243
+ + + + + K I + + E + + V
Sbjct: 311 KADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLV-DRH 369
Query: 244 TFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQ 283
P+K + A + ++L N + A + K
Sbjct: 370 -----PEKAVTWLA---VGIYYLCVNKISEARRYFSKSST 401
Score = 37.9 bits (88), Expect = 0.004
Identities = 29/217 (13%), Positives = 59/217 (27%), Gaps = 30/217 (13%)
Query: 115 LLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVR 174
L H+ + + A + ++I + + L Q Y + +
Sbjct: 89 LWRHDALMQQQYKCAAFVGEKVLDITG-NPNDAFWLAQVYCCTGDYARAKCLLTKEDLYN 147
Query: 175 PNDP----------------RMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKL 218
+ L LGE ++ A K + I + +
Sbjct: 148 RSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGI-KLEASMCYLR 206
Query: 219 AKLYDKLNETEAAADLFME-----------FVSKLDTFAAPPDKTCGFFAFKYLANH-HL 266
++Y L+ + A + + E F + D+ + +
Sbjct: 207 GQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKE 266
Query: 267 KANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQ 303
A L + Y HE+ A+ L SI +
Sbjct: 267 DAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEK 303
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting
complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin,
ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Length = 330
Score = 117 bits (294), Expect = 2e-30
Identities = 35/242 (14%), Positives = 72/242 (29%), Gaps = 24/242 (9%)
Query: 53 NNLDTAYKCAQKCLQHEETAEEAKSLLRSI--AQKRQPDESSSQAVLYFQRALKLNPNYL 110
N + + + K + + + + + + A Y +A L Y
Sbjct: 70 NKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEH----ARRYLSKATTLEKTYG 125
Query: 111 GVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQA 170
W GH + + A+ Y A ++ + +G Y + ++ QA
Sbjct: 126 PAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQA 185
Query: 171 HMVRPNDPRMLTALGEAFEKQEKISEAMKCYNK---------SRAIGDADGKALFKLAKL 221
+ P DP ++ +G + + A K + + D L L +
Sbjct: 186 LSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHV 245
Query: 222 YDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKC 281
KL + A D + + + A+ + + H N + A
Sbjct: 246 CRKLKKYAEALDYHRQALVLIPQNAS---------TYSAIGYIHSLMGNFENAVDYFHTA 296
Query: 282 LQ 283
L
Sbjct: 297 LG 298
Score = 83.1 bits (206), Expect = 4e-18
Identities = 24/149 (16%), Positives = 48/149 (32%), Gaps = 9/149 (6%)
Query: 93 SQAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYR------- 145
A +F +AL + P V +G + A + + A+E
Sbjct: 176 KLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKW 235
Query: 146 --AWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNK 203
LG L+ L Y++QA ++ P + +A+G A+ ++
Sbjct: 236 EPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHT 295
Query: 204 SRAIGDADGKALFKLAKLYDKLNETEAAA 232
+ + D ++ L + A
Sbjct: 296 ALGLRRDDTFSVTMLGHCIEMYIGDSEAY 324
Score = 80.4 bits (199), Expect = 3e-17
Identities = 17/139 (12%), Positives = 46/139 (33%), Gaps = 1/139 (0%)
Query: 94 QAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQT 153
++ +P + + +E+ N + +++ + +W+ +G
Sbjct: 40 MCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCY 99
Query: 154 Y-EILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADG 212
Y + + Y +A + A G +F + + +AM Y + +
Sbjct: 100 YLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCH 159
Query: 213 KALFKLAKLYDKLNETEAA 231
+ + Y N ++ A
Sbjct: 160 LPMLYIGLEYGLTNNSKLA 178
Score = 74.3 bits (183), Expect = 4e-15
Identities = 30/172 (17%), Positives = 60/172 (34%), Gaps = 14/172 (8%)
Query: 41 AFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKR-QPDESSSQAVLYF 99
Y+ + NN A + + L + +A + + A +F
Sbjct: 161 PMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKT----AEKWF 216
Query: 100 QRALKLN---------PNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGL 150
AL+ + + LGH ++K A+ +RQA+ + + + +
Sbjct: 217 LDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAI 276
Query: 151 GQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYN 202
G + ++ + Y+ A +R +D +T LG E SEA +
Sbjct: 277 GYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDSEAYIGAD 328
Score = 56.5 bits (137), Expect = 4e-09
Identities = 18/141 (12%), Positives = 40/141 (28%), Gaps = 1/141 (0%)
Query: 92 SSQAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLG 151
+ + ++ L V L + + + +E +
Sbjct: 4 NKPSETVIPESVDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHI 63
Query: 152 QTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAF-EKQEKISEAMKCYNKSRAIGDA 210
T L Y + + P++P A+G + K A + +K+ +
Sbjct: 64 GTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKT 123
Query: 211 DGKALFKLAKLYDKLNETEAA 231
G A + +E + A
Sbjct: 124 YGPAWIAYGHSFAVESEHDQA 144
Score = 41.1 bits (97), Expect = 4e-04
Identities = 22/130 (16%), Positives = 37/130 (28%), Gaps = 5/130 (3%)
Query: 5 LYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQK 64
+ + E + A F++ + K+ L + K A ++
Sbjct: 202 VAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQ 261
Query: 65 CLQHEETAEEAKSLLRSIAQK-RQPDESSSQAVLYFQRALKLNPNYLGVWTLLGHEYMEM 123
L S + I + AV YF AL L + T+LGH
Sbjct: 262 ALVLIPQNASTYSAIGYIHSLMGNFEN----AVDYFHTALGLRRDDTFSVTMLGHCIEMY 317
Query: 124 KNTNAAIQCY 133
+ A
Sbjct: 318 IGDSEAYIGA 327
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein
O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB:
2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Length = 568
Score = 94.9 bits (236), Expect = 1e-21
Identities = 34/191 (17%), Positives = 62/191 (32%), Gaps = 6/191 (3%)
Query: 94 QAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQT 153
+ +L + A++ P W +L + M +T A ++ + ++ A LG+
Sbjct: 7 RELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRV 66
Query: 154 YEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGK 213
+ +QA P P + LG A E + A Y ++ + +
Sbjct: 67 RWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPY 126
Query: 214 ALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDT 273
+L +L + A L + + + A FAF A L
Sbjct: 127 ITAQLLNWRRRLCDWRALDVLSAQVRAAV----AQGVGAVEPFAFLSEDASA--AEQLAC 180
Query: 274 AYKCAQKCLQH 284
A AQ
Sbjct: 181 ARTRAQAIAAS 191
Score = 64.5 bits (157), Expect = 2e-11
Identities = 19/111 (17%), Positives = 36/111 (32%)
Query: 125 NTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTAL 184
+ + R A+ D+ AW L + G ++ + P P + L
Sbjct: 4 DGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARL 63
Query: 185 GEAFEKQEKISEAMKCYNKSRAIGDADGKALFKLAKLYDKLNETEAAADLF 235
G Q++ +EA ++ L + + EAAA +
Sbjct: 64 GRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAY 114
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein
structure initiative, northeast structural genomics
consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Length = 272
Score = 91.2 bits (227), Expect = 2e-21
Identities = 34/247 (13%), Positives = 78/247 (31%), Gaps = 6/247 (2%)
Query: 41 AFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLL-RSIAQKRQPDESSSQAVLYF 99
A+ K NN A + K + + + + + D + YF
Sbjct: 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYF 64
Query: 100 QRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRL 159
+ + G M+ + AIQ Y+ A++ + + +G +
Sbjct: 65 S-KVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGN 123
Query: 160 PYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKLA 219
+ Y ++ DP++ LG+A+ ++ +A + K + A
Sbjct: 124 FPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNIYIGYLWRA 183
Query: 220 KLY---DKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYK 276
+ D + A + + + ++ K A +Y+A ++ + A
Sbjct: 184 RANAAQDPDTKQGLAKPYYEKLI-EVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADA 242
Query: 277 CAQKCLQ 283
+ L
Sbjct: 243 AWKNILA 249
Score = 74.2 bits (183), Expect = 2e-15
Identities = 24/199 (12%), Positives = 55/199 (27%), Gaps = 16/199 (8%)
Query: 41 AFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEA-KSLLRSIAQKRQPDESSSQAVLYF 99
F+Y +K A + Q + + T + + K A+ Y
Sbjct: 76 DFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPL----AIQYM 131
Query: 100 QRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRL 159
++ ++ V+ LG Y K A + + +E+ Y + +
Sbjct: 132 EKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDP 191
Query: 160 PYYG---LYYYKQA--------HMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIG 208
YY++ + + + +A + A+
Sbjct: 192 DTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALD 251
Query: 209 DADGKALFKLAKLYDKLNE 227
+ KA+ L + +
Sbjct: 252 PTNKKAIDGLKMKLEHHHH 270
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase
110; OGT, glcnac, nucleoporin, O-linked glycosylation,
TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP:
a.118.8.1
Length = 388
Score = 90.7 bits (226), Expect = 1e-20
Identities = 38/198 (19%), Positives = 75/198 (37%), Gaps = 5/198 (2%)
Query: 39 FFAFKYLANHHLKANNLDTAYKCAQKCLQHE-ETAEEAKSLLRSIAQKRQPDESSSQAVL 97
L++ H + LD + + ++ AE +L ++ Q E A+
Sbjct: 33 TGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQE----AIE 88
Query: 98 YFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEIL 157
+++ AL+L P+++ + L + + A+Q Y A++ N Y LG + L
Sbjct: 89 HYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKAL 148
Query: 158 RLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKALFK 217
Y +A +PN + LG F Q +I A+ + K+ + A
Sbjct: 149 GRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYIN 208
Query: 218 LAKLYDKLNETEAAADLF 235
L + + + A +
Sbjct: 209 LGNVLKEARIFDRAVAAY 226
Score = 90.7 bits (226), Expect = 1e-20
Identities = 36/142 (25%), Positives = 56/142 (39%)
Query: 94 QAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQT 153
+AV + RAL L+PN+ V L Y E + AI YR+AIE+ A+ L
Sbjct: 221 RAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANA 280
Query: 154 YEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGK 213
+ Y A + P L L +Q I EA++ Y K+ +
Sbjct: 281 LKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAA 340
Query: 214 ALFKLAKLYDKLNETEAAADLF 235
A LA + + + + A +
Sbjct: 341 AHSNLASVLQQQGKLQEALMHY 362
Score = 88.0 bits (219), Expect = 1e-19
Identities = 26/142 (18%), Positives = 49/142 (34%)
Query: 94 QAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQT 153
A + + + P+ GV LL + + + + + AI+ N L A+ LG
Sbjct: 17 AAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNV 76
Query: 154 YEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGK 213
Y+ + +Y+ A ++P+ L A + A++ Y +
Sbjct: 77 YKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYC 136
Query: 214 ALFKLAKLYDKLNETEAAADLF 235
L L L E A +
Sbjct: 137 VRSDLGNLLKALGRLEEAKACY 158
Score = 86.8 bits (216), Expect = 3e-19
Identities = 24/134 (17%), Positives = 51/134 (38%)
Query: 94 QAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQT 153
A+ ++RA++L P++ + L + E + A CY A+ + + L
Sbjct: 255 LAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANI 314
Query: 154 YEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGK 213
+ Y++A V P + L ++Q K+ EA+ Y ++ I
Sbjct: 315 KREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFAD 374
Query: 214 ALFKLAKLYDKLNE 227
A + ++ +
Sbjct: 375 AYSNMGNTLKEMQD 388
Score = 70.3 bits (173), Expect = 1e-13
Identities = 18/120 (15%), Positives = 38/120 (31%)
Query: 116 LGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRP 175
L H + + AA + Q + L + R ++ A P
Sbjct: 5 LAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNP 64
Query: 176 NDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKLAKLYDKLNETEAAADLF 235
+ LG ++++ ++ EA++ Y + + LA + E A +
Sbjct: 65 LLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAY 124
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin,
type III secretion, protein binding; 1.85A {Pseudomonas
aeruginosa} PDB: 2xcc_A
Length = 142
Score = 83.6 bits (207), Expect = 9e-20
Identities = 24/126 (19%), Positives = 45/126 (35%), Gaps = 2/126 (1%)
Query: 99 FQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILR 158
L+ + L LG + + A + ++ +++ D R + GLG + L
Sbjct: 7 LAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLG 66
Query: 159 LPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAI--GDADGKALF 216
L L Y ++ N+PR E + + A + +RA+ +AL
Sbjct: 67 LYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALA 126
Query: 217 KLAKLY 222
A
Sbjct: 127 ARAGAM 132
Score = 62.8 bits (153), Expect = 2e-12
Identities = 14/94 (14%), Positives = 26/94 (27%)
Query: 94 QAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQT 153
A FQ L+ + LG + A+Q Y ++ + R + +
Sbjct: 36 DAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAEC 95
Query: 154 YEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEA 187
+ L + A + P A
Sbjct: 96 HLQLGDLDGAESGFYSARALAAAQPAHEALAARA 129
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing
protein, structur genomics, joint center for structural
genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Length = 208
Score = 85.2 bits (211), Expect = 9e-20
Identities = 22/199 (11%), Positives = 55/199 (27%), Gaps = 16/199 (8%)
Query: 45 LANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDESSS----------- 93
+ ++A A ++ + E + ++
Sbjct: 10 KVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRN 69
Query: 94 --QAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLG 151
+A L+++ L+ PN + + A++ Y + +++ + A LG
Sbjct: 70 YDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLG 129
Query: 152 QTYEILRLPYYG-LYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAI--G 208
Y + L + G + + +A K
Sbjct: 130 NYYYLTAEQEKKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPS 189
Query: 209 DADGKALFKLAKLYDKLNE 227
K L K+ ++ ++N
Sbjct: 190 TEAQKTLDKILRIEKEVNR 208
Score = 66.7 bits (163), Expect = 4e-13
Identities = 33/197 (16%), Positives = 56/197 (28%), Gaps = 24/197 (12%)
Query: 116 LGHEYMEMKNTNAAIQCYRQAIEIN----------------NLDYRAWYGLGQTYEILRL 159
+E A+ +RQ I +N + + L Y+ R
Sbjct: 10 KVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRN 69
Query: 160 PYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKLA 219
+YK+ PN+ L A E + + +A++ Y K + + A L
Sbjct: 70 YDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLG 129
Query: 220 KLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQ 279
Y E E T +A L + A Q
Sbjct: 130 NYYYLTAEQEKKKLETDYKKLSSPTKMQ--------YARYRDGLSKLFTTRYEKARNSLQ 181
Query: 280 KCLQHEETAEEAKSLLR 296
K + + E K+L +
Sbjct: 182 KVILRFPSTEAQKTLDK 198
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone,
endoplasmic reticulum, TPR repeat, UNF protein response;
2.51A {Mus musculus}
Length = 359
Score = 87.3 bits (217), Expect = 1e-19
Identities = 39/291 (13%), Positives = 89/291 (30%), Gaps = 38/291 (13%)
Query: 41 AFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDESS-------- 92
A + LK LD A +K L+ + +E K + + +
Sbjct: 73 ARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFD 132
Query: 93 ----SQAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWY 148
+ A+ + + L++ + L +++ AI + A ++ + + A+Y
Sbjct: 133 GADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFY 192
Query: 149 GLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTAL------------GEAFEKQEKISE 196
+ Y L L ++ + + R E + + ++
Sbjct: 193 KISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTD 252
Query: 197 AMKCYNKSRAI----GDADGKALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKT 252
A Y + ++ ++ + K + A + E +
Sbjct: 253 ATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVN----- 307
Query: 253 CGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQ 303
A K A +L D A + + +H E ++ + L AQ+
Sbjct: 308 ----ALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLE-KAQRLL 353
Score = 81.2 bits (201), Expect = 2e-17
Identities = 30/220 (13%), Positives = 75/220 (34%), Gaps = 24/220 (10%)
Query: 94 QAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQT 153
A+ F A+ +P+ + ++ M + AA+ + I + A G
Sbjct: 21 DALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHL 80
Query: 154 Y--------------EILRL-PYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAM 198
++L+ P ++ +V+ ++ + L + + A+
Sbjct: 81 LLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAI 140
Query: 199 KCYNKSRAIGDADGKALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAF 258
+K + D + A+ + K E A SKL D T AF
Sbjct: 141 TFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKA-ASKLK-----SDNT---EAF 191
Query: 259 KYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSI 298
++ + + + + + ++CL+ ++ + + + +
Sbjct: 192 YKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQV 231
Score = 76.9 bits (190), Expect = 6e-16
Identities = 27/205 (13%), Positives = 62/205 (30%), Gaps = 19/205 (9%)
Query: 41 AFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDESSSQAVLYFQ 100
+ A +K A + + + EA S + D ++ +
Sbjct: 156 LRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAF-YKISTLYYQLGD--HELSLSEVR 212
Query: 101 RALKLNPNYLGVWTLL------------GHEYMEMKNTNAAIQCYRQAIEIN----NLDY 144
LKL+ ++ + E + A Y ++
Sbjct: 213 ECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTV 272
Query: 145 RAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKS 204
R+ + + P + + + P++ L EA+ +E EA++ Y +
Sbjct: 273 RSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAA 332
Query: 205 RAIGDADGKALFKLAKLYDKLNETE 229
+ + D + L K L +++
Sbjct: 333 QEHNENDQQIREGLEKAQRLLKQSQ 357
Score = 58.1 bits (141), Expect = 1e-09
Identities = 16/110 (14%), Positives = 38/110 (34%)
Query: 113 WTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHM 172
LG + + A+ + A++ + +Y A+Y + + L +
Sbjct: 6 HLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIA 65
Query: 173 VRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKLAKLY 222
++ + G KQ K+ EA + K ++ + ++L
Sbjct: 66 LKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLV 115
Score = 32.6 bits (75), Expect = 0.17
Identities = 22/127 (17%), Positives = 49/127 (38%), Gaps = 9/127 (7%)
Query: 177 DPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKLAKLYDKLNETEAAADLFM 236
D LG+ ++++A+ ++ + + A ++ A ++ + +++AA
Sbjct: 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLT 61
Query: 237 EFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLR 296
+ V L D T A + LK LD A +K L+ + +E K
Sbjct: 62 K-VIALK-----MDFTA---ARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAES 112
Query: 297 SIAQKRQ 303
+ + +
Sbjct: 113 QLVKADE 119
>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase
110 kDa subunit...; thiocarbamate crosslink, covalent
inhibitor, gylcosyltransfe inhibitor, O-GLCNAC
transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A*
3pe4_A*
Length = 723
Score = 88.3 bits (218), Expect = 2e-19
Identities = 39/242 (16%), Positives = 90/242 (37%), Gaps = 5/242 (2%)
Query: 41 AFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKR-QPDESSSQAVLYF 99
+ LAN + N++ A + +K L+ A S L S+ Q++ + E A++++
Sbjct: 11 SLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQE----ALMHY 66
Query: 100 QRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRL 159
+ A++++P + ++ +G+ EM++ A+QCY +AI+IN A L ++
Sbjct: 67 KEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGN 126
Query: 160 PYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKLA 219
+ Y+ A ++P+ P L + ++ + K +I + +
Sbjct: 127 IPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQLEKNRLPS 186
Query: 220 KLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQ 279
+ + +++ + L L Y +
Sbjct: 187 VHPHHSMLYPLSHGFRKAIAERHGNLCLDKINVLHKPPYEHPKDLKLSDGRLRVGYVSSD 246
Query: 280 KC 281
Sbjct: 247 FG 248
Score = 85.6 bits (211), Expect = 2e-18
Identities = 33/192 (17%), Positives = 65/192 (33%), Gaps = 3/192 (1%)
Query: 94 QAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQT 153
+AV +++AL++ P + + L + A+ Y++AI I+ A+ +G T
Sbjct: 27 EAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNT 86
Query: 154 YEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGK 213
+ ++ L Y +A + P + L + I EA+ Y + +
Sbjct: 87 LKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPD 146
Query: 214 ALFKLAKLYDKLNETEAAADLFMEFVSKL-DTFAAPPDKTCGFFAFKYLANHHLKANNLD 272
A LA + + + + VS + D + H
Sbjct: 147 AYCNLAHCLQIVCDWTDYDERMKKLVSIVADQLEKNRLPSVHPHHSMLYPLSH--GFRKA 204
Query: 273 TAYKCAQKCLQH 284
A + CL
Sbjct: 205 IAERHGNLCLDK 216
Score = 74.5 bits (182), Expect = 8e-15
Identities = 26/131 (19%), Positives = 50/131 (38%)
Query: 105 LNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGL 164
P + L + E N A++ YR+A+E+ A L + L
Sbjct: 4 SCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEAL 63
Query: 165 YYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKLAKLYDK 224
+YK+A + P + +G ++ + + A++CY ++ I A A LA ++
Sbjct: 64 MHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKD 123
Query: 225 LNETEAAADLF 235
A +
Sbjct: 124 SGNIPEAIASY 134
Score = 46.3 bits (109), Expect = 9e-06
Identities = 30/146 (20%), Positives = 53/146 (36%), Gaps = 9/146 (6%)
Query: 175 PNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKLAKLYDKLNETEAAADL 234
P L L +Q I EA++ Y K+ + A LA + + + + A
Sbjct: 6 PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMH 65
Query: 235 FMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSL 294
+ E + TFA A+ + N + ++ A +C + +Q +A S
Sbjct: 66 YKEAIRISPTFAD---------AYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSN 116
Query: 295 LRSIAQKRQPDESSSQPMECAVVLDP 320
L SI + + A+ L P
Sbjct: 117 LASIHKDSGNIPEAIASYRTALKLKP 142
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein
transport; 3.00A {Saccharomyces cerevisiae}
Length = 514
Score = 87.5 bits (217), Expect = 3e-19
Identities = 29/194 (14%), Positives = 66/194 (34%), Gaps = 4/194 (2%)
Query: 41 AFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDESSSQAVLYFQ 100
+ ++ N+ A++ +K ++ + +A + E YF
Sbjct: 239 SLEHTGIFKFLKNDPLGAHEDIKKAIELFPRVNSYIYMALIMADRNDSTE----YYNYFD 294
Query: 101 RALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLP 160
+ALKL+ N V+ G ++N + A + + +A E++ + + L
Sbjct: 295 KALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKF 354
Query: 161 YYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKLAK 220
+ +A P P + E + +A+K Y+ + + + +A
Sbjct: 355 DDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAP 414
Query: 221 LYDKLNETEAAADL 234
L K +
Sbjct: 415 LVGKATLLTRNPTV 428
Score = 79.4 bits (196), Expect = 2e-16
Identities = 27/190 (14%), Positives = 59/190 (31%), Gaps = 10/190 (5%)
Query: 94 QAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQT 153
+ + KL G + A + ++AIE+ ++ +
Sbjct: 221 EQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFP-RVNSYIYMALI 279
Query: 154 YEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGK 213
Y+ +A + N+ + G+ + +A K ++K++ + +
Sbjct: 280 MADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIF 339
Query: 214 ALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDT 273
+LA L + N+ + LF E K + A N+ D
Sbjct: 340 PYIQLACLAYRENKFDDCETLFSEAKRKFPEAPE---------VPNFFAEILTDKNDFDK 390
Query: 274 AYKCAQKCLQ 283
A K ++
Sbjct: 391 ALKQYDLAIE 400
Score = 76.3 bits (188), Expect = 2e-15
Identities = 27/176 (15%), Positives = 53/176 (30%), Gaps = 12/176 (6%)
Query: 41 AFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDESSSQAVLYFQ 100
+ + + N D A K K + + + R+ F
Sbjct: 306 VYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQ-LACLAYRE--NKFDDCETLFS 362
Query: 101 RALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLP 160
A + P V + + + A++ Y AIE+ N + G+ L
Sbjct: 363 EAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLL 422
Query: 161 YYGLY---------YYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAI 207
++A + P + L + +QE I EA+ + +S +
Sbjct: 423 TRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADL 478
Score = 57.8 bits (140), Expect = 2e-09
Identities = 25/201 (12%), Positives = 60/201 (29%), Gaps = 5/201 (2%)
Query: 94 QAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQT 153
A+ Y+ AL+L + + ++ L Y+ + + ++ +A+E+ +
Sbjct: 24 DAIKYYNWALELKEDPV-FYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASA 82
Query: 154 YEILRLPYYGLYYYKQAHMV---RPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDA 210
E L ++ + + + K+ E + + A
Sbjct: 83 NEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTE 142
Query: 211 DGKALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANN 270
K K + + + F TF A D++ +L +
Sbjct: 143 LSTQPAKERKDKQENLPSVTSMASFFGIFKPELTF-ANYDESNEADKELMNGLSNLYKRS 201
Query: 271 LDTAYKCAQKCLQHEETAEEA 291
++ K + + EE
Sbjct: 202 PESYDKADESFTKAARLFEEQ 222
Score = 54.4 bits (131), Expect = 2e-08
Identities = 24/149 (16%), Positives = 52/149 (34%), Gaps = 4/149 (2%)
Query: 106 NPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLY 165
Y G+++ K + AI+ Y A+E+ D + L Y + +
Sbjct: 2 KDKYALALKDKGNQFFRNKKYDDAIKYYNWALELKE-DPVFYSNLSACYVSVGDLKKVVE 60
Query: 166 YYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGD---ADGKALFKLAKLY 222
+A ++P+ ++L A E K ++AM + GD A + + +
Sbjct: 61 MSTKALELKPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNK 120
Query: 223 DKLNETEAAADLFMEFVSKLDTFAAPPDK 251
+++ + + + P K
Sbjct: 121 QAMSKLKEKFGDIDTATATPTELSTQPAK 149
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP:
k.38.1.1
Length = 243
Score = 84.1 bits (209), Expect = 5e-19
Identities = 23/138 (16%), Positives = 53/138 (38%)
Query: 94 QAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQT 153
+A F +A++ N + + + A+ Y +A+E+++ A+YG G
Sbjct: 41 KAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNV 100
Query: 154 YEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGK 213
Y + + +++A + + LG K E+ A+ ++ + + D +
Sbjct: 101 YVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTE 160
Query: 214 ALFKLAKLYDKLNETEAA 231
A F+ + A
Sbjct: 161 ARFQFGMCLANEGMLDEA 178
Score = 79.1 bits (196), Expect = 2e-17
Identities = 25/138 (18%), Positives = 50/138 (36%)
Query: 94 QAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQT 153
+A+ ++ +AL+L+ + + G+ Y+ + A + +A+ + +Y LG
Sbjct: 75 RALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTV 134
Query: 154 YEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGK 213
L P L Y ++A + ND G + + EA+ +
Sbjct: 135 LVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHAD 194
Query: 214 ALFKLAKLYDKLNETEAA 231
A + Y E A
Sbjct: 195 AFYNAGVTYAYKENREKA 212
Score = 76.8 bits (190), Expect = 2e-16
Identities = 23/134 (17%), Positives = 50/134 (37%)
Query: 94 QAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQT 153
+A F++AL+ ++ +LG ++++ A+ ++A+E+N D A + G
Sbjct: 109 EAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMC 168
Query: 154 YEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGK 213
+ L + P G + +E +A++ +K+ I
Sbjct: 169 LANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHML 228
Query: 214 ALFKLAKLYDKLNE 227
AL L +
Sbjct: 229 ALHAKKLLGHHHHH 242
Score = 69.9 bits (172), Expect = 6e-14
Identities = 24/142 (16%), Positives = 50/142 (35%), Gaps = 4/142 (2%)
Query: 94 QAVLYFQRALKLNPNYLGVWTLLGHEY----MEMKNTNAAIQCYRQAIEINNLDYRAWYG 149
+ + + L P + ++ G + E + A + + +AIE N D +
Sbjct: 3 SSHHHHHHSSGLVPRGSHMASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYIN 62
Query: 150 LGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGD 209
+ L +Y +A + + G + +E EA + K+ G
Sbjct: 63 FANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGM 122
Query: 210 ADGKALFKLAKLYDKLNETEAA 231
+G + L + KL + + A
Sbjct: 123 ENGDLFYMLGTVLVKLEQPKLA 144
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis,
TPR, superhelix, protein binding; HET: MSE; 2.00A
{Pseudomonas aeruginosa} PDB: 2fi7_A
Length = 252
Score = 83.9 bits (208), Expect = 7e-19
Identities = 32/205 (15%), Positives = 66/205 (32%), Gaps = 11/205 (5%)
Query: 94 QAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQT 153
QA + ++AL+++P+ L + A + YR+A+ ++ + R G
Sbjct: 55 QAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGF 114
Query: 154 YEILRLPYYGLYYYKQA--HMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDAD 211
+ +A + P R+ LG + +K ++A + + KS +
Sbjct: 115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQ 174
Query: 212 GKALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNL 271
++A L K E A + F A + +
Sbjct: 175 PSVALEMADLLYKEREYVPARQYYDLFAQGGGQNAR---------SLLLGIRLAKVFEDR 225
Query: 272 DTAYKCAQKCLQHEETAEEAKSLLR 296
DTA + + + E +
Sbjct: 226 DTAASYGLQLKRLYPGSLEYQEFQA 250
Score = 73.1 bits (180), Expect = 5e-15
Identities = 34/217 (15%), Positives = 67/217 (30%), Gaps = 15/217 (6%)
Query: 89 DESSSQAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWY 148
S + K + LG Y++ NT A R+A+EI+ A
Sbjct: 16 PRGSHMGDQNPLKTDKGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHA 75
Query: 149 GLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIG 208
L ++ P Y++A + R+L G +Q++ EA + + A
Sbjct: 76 ALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLE--ASQ 133
Query: 209 DAD----GKALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANH 264
D + L + ++ + A + F + + + +A+
Sbjct: 134 DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPS---------VALEMADL 184
Query: 265 HLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQK 301
K A + Q + L +A+
Sbjct: 185 LYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKV 221
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha
helix, antivirus, antiviral protein; 2.80A {Homo
sapiens}
Length = 472
Score = 86.1 bits (213), Expect = 7e-19
Identities = 51/325 (15%), Positives = 101/325 (31%), Gaps = 32/325 (9%)
Query: 5 LYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCG-FFAFKYLANHHLKANNLDTAYKCAQ 63
+Y + + + F++P + N + A C +
Sbjct: 103 VYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFE 162
Query: 64 KCLQHEETAEEAKSLLRSIAQKRQPDESSSQAVLYFQRALKLNPNYLGVWTLLGHEYMEM 123
K L+ + E S L + + S A+ ++A++LNP+ + LL + +M
Sbjct: 163 KALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKM 222
Query: 124 KNTN----AAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPR 179
+ + +A+E + Y P + K+A PN+
Sbjct: 223 REEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAY 282
Query: 180 MLTALGEAFEKQ-------------------EKISEAMKCYNKSRAIGDADGKALFKLAK 220
+ +G + + E I A+ K+ D + LA
Sbjct: 283 LHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILAS 342
Query: 221 LYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQK 280
L+ ++ E A F + SK +Y + D A +
Sbjct: 343 LHALADQYEEAEYYFQKEFSK-----ELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIE 397
Query: 281 CLQHEET---AEEAKSLLRSIAQKR 302
++ + E+ K L+ IA+ R
Sbjct: 398 GVKINQKSREKEKMKDKLQKIAKMR 422
Score = 77.3 bits (190), Expect = 8e-16
Identities = 41/285 (14%), Positives = 85/285 (29%), Gaps = 41/285 (14%)
Query: 51 KANNLDTAYKCAQKCLQHEETAEEAKSLL-RSIAQKRQPDESSSQAVLYFQRALKLNPNY 109
A ++ ++ + K LL + + R+ E + + AL+ P
Sbjct: 187 NWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGV 246
Query: 110 LGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTY--------------- 154
V Y + AI+ ++A+E + +G Y
Sbjct: 247 TDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGM 306
Query: 155 ----EILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNK--SRAIG 208
++L L + + + K+A N R+ + L ++ EA + K S+ +
Sbjct: 307 YGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELT 366
Query: 209 DAD--------GKALFKLAKLYD----------KLNETEAAADLFMEFVSKLDTFAAPPD 250
G K D K+N+ + + + K+ +
Sbjct: 367 PVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQKIAKMRLSKN 426
Query: 251 KTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLL 295
A LA + A + +++ L+ A S
Sbjct: 427 GADSE-ALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWN 470
Score = 55.7 bits (134), Expect = 9e-09
Identities = 18/148 (12%), Positives = 41/148 (27%), Gaps = 18/148 (12%)
Query: 5 LYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQK 64
L+ ++ E A F + SK +Y + D A +
Sbjct: 343 LHALADQYEEAEYYFQKEFSK-----ELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIE 397
Query: 65 CLQHEETAEEAKSLLRSIAQKRQPDESSSQAVLYFQRALKLNPNYLGVWTLLGHEYMEMK 124
++ + + E + + + + + L N +L +
Sbjct: 398 GVKINQKSREKEKMKDKLQK-------------IAKMRLSKNGADSEALHVLAFLQELNE 444
Query: 125 NTNAAIQCYRQAIEINNLDYRAWYGLGQ 152
A + + +E +L A G+
Sbjct: 445 KMQQADEDSERGLESGSLIPSASSWNGE 472
Score = 39.5 bits (92), Expect = 0.001
Identities = 28/209 (13%), Positives = 62/209 (29%), Gaps = 27/209 (12%)
Query: 97 LYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDY---------RAW 147
++++ + + LL + AA++C R+A E+ ++ W
Sbjct: 38 VFYRTEFQNREFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTW 97
Query: 148 YGLGQTY--------EILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEK--QEKISEA 197
Y + + K + R P + G K + A
Sbjct: 98 GNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERA 157
Query: 198 MKCYNKSRAIGDADGKALFKLAKLY---DKLNETEAAADLFMEFVSKLDTFAAPPDKTCG 254
C+ K+ + + LA D ++ A D + + +L+ P ++
Sbjct: 158 KVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAI-RLN----PDNQYLK 212
Query: 255 FFAFKYLANHHLKANNLDTAYKCAQKCLQ 283
L + K ++ L+
Sbjct: 213 VLLALKLHKMREEGEEEGEGEKLVEEALE 241
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria
translocation, allosteric REG phosphoprotein, TPR
repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae}
PDB: 3fp3_A 3fp4_A 3lca_A
Length = 537
Score = 86.3 bits (214), Expect = 9e-19
Identities = 36/201 (17%), Positives = 70/201 (34%), Gaps = 4/201 (1%)
Query: 41 AFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDESSSQAVLYFQ 100
A Y H NNL A Q+ + T L ++A K E +FQ
Sbjct: 245 ALCYTGIFHFLKNNLLDAQVLLQESINLHPTPNSYIFLALTLADKENSQE----FFKFFQ 300
Query: 101 RALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLP 160
+A+ LNP Y + G Y +++ A + +++A +N + + L
Sbjct: 301 KAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKF 360
Query: 161 YYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKLAK 220
++ + + P P + T E + A+K Y+ ++ + + K +
Sbjct: 361 TESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGP 420
Query: 221 LYDKLNETEAAADLFMEFVSK 241
L K + + +
Sbjct: 421 LIGKATILARQSSQDPTQLDE 441
Score = 82.5 bits (204), Expect = 1e-17
Identities = 41/254 (16%), Positives = 81/254 (31%), Gaps = 11/254 (4%)
Query: 38 GFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDESSSQAVL 97
G F + ++N DTAY LQ +A + L+ + + + +
Sbjct: 172 GIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLV-ANDLLTKSTDMYHSLLS 230
Query: 98 YFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEIL 157
L N G + N A +++I ++ ++ L T
Sbjct: 231 ANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHP-TPNSYIFLALTLADK 289
Query: 158 RLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKALFK 217
++++A + P P G+ + + A + + K++++ + +
Sbjct: 290 ENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQ 349
Query: 218 LAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKC 277
LA L K + + F E K T + A + DTA K
Sbjct: 350 LACLLYKQGKFTESEAFFNETKLKFPTLPE---------VPTFFAEILTDRGDFDTAIKQ 400
Query: 278 AQKCLQHEETAEEA 291
+ EE E+
Sbjct: 401 YDIAKRLEEVQEKI 414
Score = 73.6 bits (181), Expect = 1e-14
Identities = 27/223 (12%), Positives = 65/223 (29%), Gaps = 24/223 (10%)
Query: 41 AFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDESSSQAVLYFQ 100
+ + + + A + QK L + +Q +++ +F
Sbjct: 312 TYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQL-ACLLYKQ--GKFTESEAFFN 368
Query: 101 RALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLP 160
P V T + + + AI+ Y A + + + G+G +
Sbjct: 369 ETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATIL 428
Query: 161 YYG----------------LYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKS 204
+ +A + P + L + + EKI EA++ + S
Sbjct: 429 ARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDS 488
Query: 205 RAIGDADGKA-----LFKLAKLYDKLNETEAAADLFMEFVSKL 242
+ + + AK+ +L + +++
Sbjct: 489 AILARTMDEKLQATTFAEAAKIQKRLRADPIISAKMELTLARY 531
Score = 56.7 bits (137), Expect = 5e-09
Identities = 35/235 (14%), Positives = 67/235 (28%), Gaps = 39/235 (16%)
Query: 94 QAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQT 153
+A+ Y+Q A++L+PN ++ + Y+ + I+ +A+EI +A
Sbjct: 43 EAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASA 102
Query: 154 YEILR-----------------------LPYYGLYYYKQAHMVRPNDPRM-LTALGEAFE 189
E L P KQA V + +
Sbjct: 103 NESLGNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLP 162
Query: 190 KQEKISEAMKCYNKSRAIGDADGKALFKLAK------LYDKLNETEA----AADLFMEFV 239
++ ++ + + + + A L + T+ A DL +
Sbjct: 163 SNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKST 222
Query: 240 SKLDTFAAPPDKT-----CGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAE 289
+ + A Y H NNL A Q+ + T
Sbjct: 223 DMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPTPN 277
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide
repeat, type III secretion; HET: MLY; 1.95A {Yersinia
enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Length = 148
Score = 80.7 bits (199), Expect = 1e-18
Identities = 16/144 (11%), Positives = 47/144 (32%)
Query: 94 QAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQT 153
+++ + L L + A ++ +++ D R + GLG
Sbjct: 5 SGGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGAC 64
Query: 154 YEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGK 213
+ + ++ Y ++ +PR E + +++EA ++ + +
Sbjct: 65 RQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPE 124
Query: 214 ALFKLAKLYDKLNETEAAADLFME 237
++ L + ++ E
Sbjct: 125 FXELSTRVSSMLEAIKLKKEMKHE 148
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A
{Saccharomyces cerevisiae}
Length = 258
Score = 82.6 bits (205), Expect = 2e-18
Identities = 27/189 (14%), Positives = 66/189 (34%), Gaps = 6/189 (3%)
Query: 41 AFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDESSSQAVLYFQ 100
+K ++ + N +K +++ + + + + R ++ + +
Sbjct: 74 DYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEK----ELKKAE 129
Query: 101 RALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLP 160
+NP L G EY + A++ Y + I+ D R + L
Sbjct: 130 AEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSF 189
Query: 161 YYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAI--GDADGKALFKL 218
+ +A PN R A ++ + A++ + +R +G + ++
Sbjct: 190 PEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREI 249
Query: 219 AKLYDKLNE 227
+LY K ++
Sbjct: 250 DQLYYKASQ 258
Score = 79.1 bits (196), Expect = 3e-17
Identities = 27/191 (14%), Positives = 54/191 (28%), Gaps = 5/191 (2%)
Query: 41 AFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDESSSQAVLYFQ 100
K N KA D A + K + + + + +K + + A+
Sbjct: 7 KEKAEGNKFYKARQFDEAIEHYNKAWELHKDITYLNNRAAAEYEKGEYET----AISTLN 62
Query: 101 RALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLP 160
A++ + ++ + + N + ++ IE + LR
Sbjct: 63 DAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQ-KSLTEHRTADILTKLRNA 121
Query: 161 YYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKLAK 220
L + V P G+ + + A+K Y + D + A
Sbjct: 122 EKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAA 181
Query: 221 LYDKLNETEAA 231
KL A
Sbjct: 182 ALAKLMSFPEA 192
Score = 60.3 bits (147), Expect = 1e-10
Identities = 19/177 (10%), Positives = 50/177 (28%), Gaps = 11/177 (6%)
Query: 107 PNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYY 166
+ G+++ + + + AI+ Y +A E++ D +
Sbjct: 2 GSMADKEKAEGNKFYKARQFDEAIEHYNKAWELHK-DITYLNNRAAAEYEKGEYETAIST 60
Query: 167 YKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKLAKLYDKLN 226
A + ++F + + K+ + A + KL
Sbjct: 61 LNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEY-YQKSLTEHRTADILTKLR 119
Query: 227 ETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQ 283
E E + ++ P+K + + ++ A K + ++
Sbjct: 120 NAEKELKKA-EAEAYVN-----PEK---AEEARLEGKEYFTKSDWPNAVKAYTEMIK 167
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein;
secretin, TPR repeat, type IV pilus, bacterail
virulence; 1.54A {Neisseria meningitidis}
Length = 225
Score = 80.4 bits (199), Expect = 7e-18
Identities = 39/206 (18%), Positives = 67/206 (32%), Gaps = 11/206 (5%)
Query: 94 QAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQT 153
QA + ALK +P W + Y +K + A + +RQA+ I G
Sbjct: 26 QATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWF 85
Query: 154 -YEILRLPYYGLYYYKQA--HMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDA 210
L P + Y+ +A P G KQ + A +S A
Sbjct: 86 LCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQ 145
Query: 211 DGKALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANN 270
A +LA+ + A F ++ S+++ A N
Sbjct: 146 FPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQAD--------DLLLGWKIAKALGN 197
Query: 271 LDTAYKCAQKCLQHEETAEEAKSLLR 296
AY+ + + +EE +++L
Sbjct: 198 AQAAYEYEAQLQANFPYSEELQTVLT 223
Score = 56.9 bits (138), Expect = 1e-09
Identities = 34/204 (16%), Positives = 65/204 (31%), Gaps = 13/204 (6%)
Query: 106 NPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLY 165
+ T L EYM ++ A A++ + + AW + Y+ L++
Sbjct: 4 ANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQE 63
Query: 166 YYKQAHMVRPNDPRMLTALGEAF-EKQEKISEAMKCYNK--SRAIGDADGKALFKLAKLY 222
++QA ++P+ + G + + +E+M ++K + A
Sbjct: 64 SFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICS 123
Query: 223 DKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCL 282
K + A ++ F AFK LA + A L A +K
Sbjct: 124 AKQGQFGLAEAYLKRSLAAQPQFPP---------AFKELARTKMLAGQLGDADYYFKKYQ 174
Query: 283 QHEETAEEAKSLLRSIAQKRQPDE 306
E + LL +
Sbjct: 175 SRVEVLQAD-DLLLGWKIAKALGN 197
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic
reticulum, protein folding, tetratricopeptiderepeat, J
domain, unfolded protein respons; 3.00A {Homo sapiens}
PDB: 2y4u_A
Length = 450
Score = 81.7 bits (202), Expect = 3e-17
Identities = 37/283 (13%), Positives = 86/283 (30%), Gaps = 32/283 (11%)
Query: 41 AFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIA--QKRQPDESSSQAVLY 98
+ A + + + A K L+ E + LR+ ++ +P + A+
Sbjct: 145 RLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELR-ELRAECFIKEGEPRK----AISD 199
Query: 99 FQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILR 158
+ A KL + + + Y ++ + ++ R+ ++++ R + Q ++ +
Sbjct: 200 LKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNK 259
Query: 159 LPYYGLYY------------YKQAHMVRPNDP----RMLTALGEAFEKQEKISEAMKCYN 202
L Y+ P+ R + F K EK EA++ +
Sbjct: 260 LIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCS 319
Query: 203 KSRAIGDADGKALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLA 262
+ + + AL A+ Y + A + + + L
Sbjct: 320 EVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQ---------IREGLE 370
Query: 263 NHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPD 305
++ +E R +A + PD
Sbjct: 371 KAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPD 413
Score = 77.8 bits (192), Expect = 5e-16
Identities = 30/221 (13%), Positives = 77/221 (34%), Gaps = 24/221 (10%)
Query: 93 SQAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQ 152
+ A+ F A+ +P+ + ++ M + AA+ + I++ A G
Sbjct: 43 ADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGH 102
Query: 153 TY--------------EILRL-PYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEA 197
++L+ P Q+ +++ ++ + L + + A
Sbjct: 103 LLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAA 162
Query: 198 MKCYNKSRAIGDADGKALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFA 257
+ +K + D + A+ + K E A SKL D T A
Sbjct: 163 IAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKA-ASKLK-----NDNT---EA 213
Query: 258 FKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSI 298
F ++ + + + + + ++CL+ ++ + + + +
Sbjct: 214 FYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQV 254
Score = 67.8 bits (166), Expect = 9e-13
Identities = 32/174 (18%), Positives = 56/174 (32%), Gaps = 19/174 (10%)
Query: 43 KYLANHHLKANNLDTAYKCAQKCLQHE-ETAEEAKSLLRSIAQKRQPDESSSQAVLYFQR 101
A ++ A + ++ E AE I DE +A+
Sbjct: 261 IESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSE 320
Query: 102 ALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPY 161
L++ P+ + Y+ + + AIQ Y A E N D + GL + +L+
Sbjct: 321 VLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQ 380
Query: 162 YGLYYY------------------KQAHMVRPNDPRMLTALGEAFEKQEKISEA 197
YY K A P++ + +A +K I+ A
Sbjct: 381 KRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAA 434
Score = 63.6 bits (155), Expect = 2e-11
Identities = 30/225 (13%), Positives = 63/225 (28%), Gaps = 32/225 (14%)
Query: 94 QAVLYFQRALKLNPNYLGVWTLL---------------GHEYMEMKNTNAAIQCYRQAIE 138
+A F++ LK NP+ + AAI + +E
Sbjct: 112 EAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILE 171
Query: 139 INNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAM 198
+ D + + P + K A ++ ++ + + + ++
Sbjct: 172 VCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSL 231
Query: 199 KCYNKSRAI--GDADGKALFKLAKLYDKLNET----------EAAADLFMEFVSKLDTFA 246
+ + A +K K +KL E+ A + V K +
Sbjct: 232 SEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYES-VMKTE--- 287
Query: 247 APPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEA 291
P + + + + K A + + LQ E A
Sbjct: 288 -PSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNA 331
Score = 35.4 bits (82), Expect = 0.027
Identities = 15/108 (13%), Positives = 34/108 (31%), Gaps = 15/108 (13%)
Query: 41 AFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKR-------------- 86
A K A +L D A + + +H E ++ + L +
Sbjct: 331 ALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGV 390
Query: 87 QPDESSSQAVL-YFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCY 133
+ + + + Y + AL+ +P+ + + AA +
Sbjct: 391 KRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVL 438
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A
{Thermus thermophilus}
Length = 217
Score = 78.7 bits (195), Expect = 3e-17
Identities = 27/149 (18%), Positives = 49/149 (32%), Gaps = 12/149 (8%)
Query: 94 QAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQT 153
A+ F+RALK NP L +++ N A++ + + + L +
Sbjct: 23 AALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEA 82
Query: 154 YEILRLPYYGLY-----------YYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYN 202
Y L K A V P + G + + +A
Sbjct: 83 YVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLK 142
Query: 203 KSRAIGDADGKALFKLAKLYDKLNETEAA 231
++ A+ D + LA+LY + + A
Sbjct: 143 QALALED-TPEIRSALAELYLSMGRLDEA 170
Score = 71.8 bits (177), Expect = 6e-15
Identities = 24/128 (18%), Positives = 44/128 (34%), Gaps = 1/128 (0%)
Query: 76 KSLLRSIAQKRQPDESSSQAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQ 135
+L R + + QA+ + A ++NP Y + G Y + + A +Q
Sbjct: 84 VALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQ 143
Query: 136 AIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKIS 195
A+ + + L + Y + L Y +A P D + A + K
Sbjct: 144 ALALED-TPEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAE 202
Query: 196 EAMKCYNK 203
EA +
Sbjct: 203 EAARAAAL 210
Score = 70.3 bits (173), Expect = 2e-14
Identities = 28/149 (18%), Positives = 49/149 (32%), Gaps = 12/149 (8%)
Query: 94 QAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNT-----------NAAIQCYRQAIEINNL 142
A+ + + P YLG + +L Y+ + A+ + A +N
Sbjct: 57 PALENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPR 116
Query: 143 DYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYN 202
G Y +L KQA + P + +AL E + ++ EA+ Y
Sbjct: 117 YAPLHLQRGLVYALLGERDKAEASLKQALALEDT-PEIRSALAELYLSMGRLDEALAQYA 175
Query: 203 KSRAIGDADGKALFKLAKLYDKLNETEAA 231
K+ D + A + E A
Sbjct: 176 KALEQAPKDLDLRVRYASALLLKGKAEEA 204
Score = 50.2 bits (121), Expect = 2e-07
Identities = 24/127 (18%), Positives = 43/127 (33%), Gaps = 11/127 (8%)
Query: 116 LGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRP 175
LG + + +AA+ + +A++ N D A Y L +T L L L K P
Sbjct: 11 LGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTP 70
Query: 176 NDPRMLTALGEAFEK-----------QEKISEAMKCYNKSRAIGDADGKALFKLAKLYDK 224
L EA+ + + +A+ + + + +Y
Sbjct: 71 RYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYAL 130
Query: 225 LNETEAA 231
L E + A
Sbjct: 131 LGERDKA 137
Score = 41.4 bits (98), Expect = 2e-04
Identities = 6/47 (12%), Positives = 15/47 (31%)
Query: 94 QAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEIN 140
+A+ + +AL+ P L + + A + +
Sbjct: 169 EALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEHHHH 215
Score = 27.9 bits (63), Expect = 4.0
Identities = 11/52 (21%), Positives = 20/52 (38%)
Query: 184 LGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKLAKLYDKLNETEAAADLF 235
LG + A+ + ++ D +AL+ LA+ KL A +
Sbjct: 11 LGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENG 62
>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding
DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A
2kq5_A
Length = 499
Score = 81.3 bits (201), Expect = 3e-17
Identities = 23/197 (11%), Positives = 53/197 (26%), Gaps = 3/197 (1%)
Query: 40 FAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLL-RSIAQKRQPDESSSQAVLY 98
K + A A++ A T E+ ++ ++ E+ + +
Sbjct: 37 QLLKIAKRGGVTAVEAVHAWRNALTGAPLNLTPEQVVAIASHDGGKQAL--ETVQRLLPV 94
Query: 99 FQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILR 158
+A L P + ++ + QA + A + L
Sbjct: 95 LCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQALE 154
Query: 159 LPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKL 218
L QAH + P + + G + E + + ++ + A+
Sbjct: 155 TVQALLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASN 214
Query: 219 AKLYDKLNETEAAADLF 235
L + +
Sbjct: 215 GGGKQALETVQRLLPVL 231
Score = 79.4 bits (196), Expect = 2e-16
Identities = 17/141 (12%), Positives = 37/141 (26%)
Query: 95 AVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTY 154
+ +A L P + G ++ + QA + A
Sbjct: 227 LLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNSGGK 286
Query: 155 EILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKA 214
+ L L QAH + P + + G + E + + ++ + A
Sbjct: 287 QALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVA 346
Query: 215 LFKLAKLYDKLNETEAAADLF 235
+ L + +
Sbjct: 347 IASHDGGKQALETVQRLLPVL 367
Score = 79.0 bits (195), Expect = 2e-16
Identities = 17/138 (12%), Positives = 36/138 (26%)
Query: 94 QAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQT 153
+ + +A L P + ++ + QA + A G
Sbjct: 328 RLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQVVAIASNGGG 387
Query: 154 YEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGK 213
+ L L QAH + P + + + E + + ++ +
Sbjct: 388 KQALETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQVV 447
Query: 214 ALFKLAKLYDKLNETEAA 231
A+ L A
Sbjct: 448 AIASNGGGRPALESIVAQ 465
Score = 78.3 bits (193), Expect = 4e-16
Identities = 16/138 (11%), Positives = 36/138 (26%)
Query: 94 QAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQT 153
+ + +A L P + ++ + QA + A G
Sbjct: 260 RLLPVLCQAHGLTPQQVVAIASNSGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGG 319
Query: 154 YEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGK 213
+ L L QAH + P + + + E + + ++ +
Sbjct: 320 KQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQVV 379
Query: 214 ALFKLAKLYDKLNETEAA 231
A+ L +
Sbjct: 380 AIASNGGGKQALETVQRL 397
Score = 75.6 bits (186), Expect = 3e-15
Identities = 17/138 (12%), Positives = 37/138 (26%)
Query: 94 QAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQT 153
+ + +A L P + G ++ + QA + A
Sbjct: 294 RLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGG 353
Query: 154 YEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGK 213
+ L L QAH + P + + G + E + + ++ +
Sbjct: 354 KQALETVQRLLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPEQVV 413
Query: 214 ALFKLAKLYDKLNETEAA 231
A+ L +
Sbjct: 414 AIASHDGGKQALETVQRL 431
Score = 73.6 bits (181), Expect = 1e-14
Identities = 25/189 (13%), Positives = 49/189 (25%), Gaps = 16/189 (8%)
Query: 58 AYKCAQKCLQHEETAEEAKSLLRSIAQKRQPD---------------ESSSQAVLYFQRA 102
A Q ET + +L A P+ E+ + + +A
Sbjct: 142 AIASHDGGKQALETVQALLPVLCQ-AHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQA 200
Query: 103 LKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYY 162
L P + G ++ + QA + A G + L
Sbjct: 201 HGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQR 260
Query: 163 GLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKLAKLY 222
L QAH + P + + + E + + ++ + A+
Sbjct: 261 LLPVLCQAHGLTPQQVVAIASNSGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGK 320
Query: 223 DKLNETEAA 231
L +
Sbjct: 321 QALETVQRL 329
Score = 67.9 bits (166), Expect = 1e-12
Identities = 17/114 (14%), Positives = 32/114 (28%)
Query: 94 QAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQT 153
+ + +A L P + G ++ + QA + A
Sbjct: 362 RLLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPEQVVAIASHDGG 421
Query: 154 YEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAI 207
+ L L QAH + P + + G E I + + + A
Sbjct: 422 KQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGRPALESIVAQLSRPDPALAA 475
Score = 59.8 bits (145), Expect = 4e-10
Identities = 22/163 (13%), Positives = 44/163 (26%), Gaps = 5/163 (3%)
Query: 78 LLRSIAQKRQPDESSSQAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQA- 136
L + + +A+L L+ P L LL A+ +R A
Sbjct: 1 LEHHHHHHQWSGARALEALLTVAGELRGPPLQLDTGQLLKIAKRGGVTAVEAVHAWRNAL 60
Query: 137 ----IEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQE 192
+ + A + L L QAH + P + + + E
Sbjct: 61 TGAPLNLTPEQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALE 120
Query: 193 KISEAMKCYNKSRAIGDADGKALFKLAKLYDKLNETEAAADLF 235
+ + ++ + A+ L +A +
Sbjct: 121 TVQRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQALLPVL 163
Score = 42.4 bits (100), Expect = 1e-04
Identities = 10/59 (16%), Positives = 20/59 (33%), Gaps = 1/59 (1%)
Query: 94 QAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYR-AWYGLG 151
+ + +A L P + G +++ A + A+ D+ A LG
Sbjct: 430 RLLPVLCQAHGLTPQQVVAIASNGGGRPALESIVAQLSRPDPALAALTNDHLVALACLG 488
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR
protein, peroxin 5, PEX5, PTS1 binding domain,
protein-peptide complex, receptor; 2.00A {Trypanosoma
brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Length = 327
Score = 80.0 bits (198), Expect = 3e-17
Identities = 26/158 (16%), Positives = 46/158 (29%), Gaps = 15/158 (9%)
Query: 93 SQAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQ 152
++A L F+ + P W LG E + AI A ++ D L
Sbjct: 38 AEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAV 97
Query: 153 TYE---------------ILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEA 197
++ +L P Y D + + F + E
Sbjct: 98 SHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYREC 157
Query: 198 MKCYNKSRAIGDADGKALFKLAKLYDKLNETEAAADLF 235
+ + + D + L LY+ N ++AA
Sbjct: 158 RTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANL 195
Score = 75.4 bits (186), Expect = 1e-15
Identities = 35/175 (20%), Positives = 60/175 (34%), Gaps = 12/175 (6%)
Query: 41 AFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDESSS------- 93
LA H +N + A + L + E+ S+ S
Sbjct: 91 VHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAA 150
Query: 94 -----QAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWY 148
+ AL++NPN + LG Y N ++A R+A+E+ D + W
Sbjct: 151 PNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWN 210
Query: 149 GLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNK 203
LG T P L Y +A + P R++ + ++ + A K +
Sbjct: 211 KLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVR 265
Score = 66.2 bits (162), Expect = 2e-12
Identities = 19/122 (15%), Positives = 36/122 (29%), Gaps = 12/122 (9%)
Query: 94 QAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQT 153
A +RA++L P+ +W LG A+ Y +A++IN R Y + +
Sbjct: 190 SAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVS 249
Query: 154 YEILRLPYYGLYYYKQAHMVRPNDP------------RMLTALGEAFEKQEKISEAMKCY 201
Y + +A ++ M + Y
Sbjct: 250 YSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTY 309
Query: 202 NK 203
+
Sbjct: 310 AQ 311
Score = 63.8 bits (156), Expect = 1e-11
Identities = 17/110 (15%), Positives = 30/110 (27%)
Query: 94 QAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQT 153
Q + Y G +++ N A + + AW LG T
Sbjct: 5 QNNTDYPFEANNPYMYHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLT 64
Query: 154 YEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNK 203
+ A M+ P D + AL + + + A+
Sbjct: 65 QAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRA 114
Score = 35.3 bits (82), Expect = 0.023
Identities = 8/63 (12%), Positives = 15/63 (23%), Gaps = 12/63 (19%)
Query: 94 QAVLYFQRALKLNPNYLG------------VWTLLGHEYMEMKNTNAAIQCYRQAIEINN 141
A RA+ + +W M + Y Q +E
Sbjct: 258 LAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVEPFA 317
Query: 142 LDY 144
++
Sbjct: 318 KEF 320
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT
protein-protein interactions, protein binding; 2.00A
{Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A
3asg_A 3ash_A 3as8_A 3asf_A
Length = 186
Score = 77.5 bits (192), Expect = 4e-17
Identities = 23/138 (16%), Positives = 54/138 (39%)
Query: 94 QAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQT 153
QAV+ ++ + + V LG Y++ + + +++ + + LG T
Sbjct: 26 QAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLT 85
Query: 154 YEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGK 213
Y ++ + + P + + LG A + + EA+ + + + +GK
Sbjct: 86 YVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGK 145
Query: 214 ALFKLAKLYDKLNETEAA 231
+A Y+++ E A
Sbjct: 146 VHRAIAFSYEQMGRHEEA 163
Score = 76.7 bits (190), Expect = 6e-17
Identities = 24/114 (21%), Positives = 57/114 (50%)
Query: 94 QAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQT 153
+ +R+L P+ + V T+LG Y++++ + A+ + E N +++ + LG
Sbjct: 60 RGTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVA 119
Query: 154 YEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAI 207
+ L + +K A +RPN+ ++ A+ ++E+ + EA+ + K+ +
Sbjct: 120 LDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANEL 173
Score = 62.9 bits (154), Expect = 5e-12
Identities = 20/129 (15%), Positives = 43/129 (33%)
Query: 103 LKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYY 162
+ + + G + + + A+ Q + + D LG Y
Sbjct: 1 MGNDDIRQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDR 60
Query: 163 GLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKLAKLY 222
G +++ P++ ++ T LG + + +K A+ K + F+L
Sbjct: 61 GTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVAL 120
Query: 223 DKLNETEAA 231
D L + A
Sbjct: 121 DNLGRFDEA 129
Score = 58.6 bits (143), Expect = 1e-10
Identities = 15/84 (17%), Positives = 33/84 (39%)
Query: 94 QAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQT 153
AV + + NP V LG + + AI ++ A+ + + + + +
Sbjct: 94 LAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFS 153
Query: 154 YEILRLPYYGLYYYKQAHMVRPND 177
YE + L ++K+A+ +
Sbjct: 154 YEQMGRHEEALPHFKKANELDEGA 177
Score = 50.5 bits (122), Expect = 8e-08
Identities = 13/54 (24%), Positives = 24/54 (44%)
Query: 94 QAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAW 147
+A+ F+ AL L PN V + Y +M A+ +++A E++
Sbjct: 128 EAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANELDEGASVEL 181
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat,
consensus protein, superhelix, de novo protein; 2.30A
{Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Length = 136
Score = 74.0 bits (183), Expect = 2e-16
Identities = 35/114 (30%), Positives = 60/114 (52%)
Query: 94 QAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQT 153
+A+ Y+Q+AL+L+P W LG+ Y + + + AI+ Y++A+E++ AWY LG
Sbjct: 19 EAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNA 78
Query: 154 YEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAI 207
Y + YY++A + P LG A+ KQ EA++ Y K+ +
Sbjct: 79 YYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132
Score = 55.5 bits (135), Expect = 8e-10
Identities = 32/116 (27%), Positives = 55/116 (47%)
Query: 116 LGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRP 175
LG+ Y + + + AI+ Y++A+E++ AWY LG Y + YY++A + P
Sbjct: 7 LGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 66
Query: 176 NDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKLAKLYDKLNETEAA 231
LG A+ KQ EA++ Y K+ + +A + L Y K + + A
Sbjct: 67 RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEA 122
Score = 46.6 bits (112), Expect = 1e-06
Identities = 16/46 (34%), Positives = 31/46 (67%)
Query: 95 AVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEIN 140
A+ Y+Q+AL+L+P W LG+ Y + + + AI+ Y++A+E++
Sbjct: 88 AIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 133
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide
repeat, TPR, chapero virulence; 2.15A {Shigella
flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Length = 151
Score = 73.7 bits (181), Expect = 4e-16
Identities = 17/124 (13%), Positives = 40/124 (32%), Gaps = 2/124 (1%)
Query: 99 FQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILR 158
+ + + + +++ A +R + + GL Y+I
Sbjct: 25 LKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKE 84
Query: 159 LPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKL 218
Y A + ND + G+ + + +A +C+ I ++ + L
Sbjct: 85 QFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFEL--VIQHSNDEKLKIK 142
Query: 219 AKLY 222
A+ Y
Sbjct: 143 AQSY 146
Score = 57.5 bits (139), Expect = 2e-10
Identities = 13/85 (15%), Positives = 27/85 (31%)
Query: 94 QAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQT 153
+A ++F+ + + L Y + A Y A + DY + GQ
Sbjct: 54 EAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQC 113
Query: 154 YEILRLPYYGLYYYKQAHMVRPNDP 178
L+ P ++ ++
Sbjct: 114 QLRLKAPLKAKECFELVIQHSNDEK 138
Score = 57.1 bits (138), Expect = 3e-10
Identities = 13/103 (12%), Positives = 33/103 (32%)
Query: 133 YRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQE 192
+ I + Y + +++ + + + L ++ +E
Sbjct: 25 LKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKE 84
Query: 193 KISEAMKCYNKSRAIGDADGKALFKLAKLYDKLNETEAAADLF 235
+ +A Y + A+G D +F + +L A + F
Sbjct: 85 QFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECF 127
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C
biogenesis, O157:H7 EDL933, formate- nitrite reductase
complex, lyase; 2.05A {Escherichia coli}
Length = 177
Score = 73.7 bits (181), Expect = 6e-16
Identities = 21/145 (14%), Positives = 48/145 (33%), Gaps = 3/145 (2%)
Query: 70 ETAEEAKSLLRSIAQKRQPDESSSQAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAA 129
+ R + ++ + Q ++ NP W LLG Y+ + + +
Sbjct: 4 QAVRAEYQRQRDPLHQFASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNS 63
Query: 130 IQCYRQAIEINNLDYRAWYGLGQTYEILRLPYY---GLYYYKQAHMVRPNDPRMLTALGE 186
+ YRQA+++ + + L + +A + N+ L L
Sbjct: 64 LLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLAS 123
Query: 187 AFEKQEKISEAMKCYNKSRAIGDAD 211
Q ++A++ + K +
Sbjct: 124 DAFMQANYAQAIELWQKVMDLNSPR 148
Score = 54.5 bits (131), Expect = 4e-09
Identities = 20/119 (16%), Positives = 49/119 (41%), Gaps = 1/119 (0%)
Query: 41 AFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDESSSQAVLYFQ 100
+ L ++L N+ + ++ LQ E + L ++ + ++Q
Sbjct: 46 QWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAMID 105
Query: 101 RALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRL 159
+AL L+ N + LL + N AI+ +++ +++N+ L ++ + +L
Sbjct: 106 KALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRI-NRTQLVESINMAKL 163
Score = 40.2 bits (94), Expect = 3e-04
Identities = 23/141 (16%), Positives = 43/141 (30%), Gaps = 12/141 (8%)
Query: 166 YYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKLAKLY--- 222
+ P + LGE + Q S ++ Y ++ + + + LA +
Sbjct: 32 ALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQ 91
Query: 223 DKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCL 282
+ T + + LD + T A LA+ N A + QK +
Sbjct: 92 ASQHMTAQTRAMIDK-ALALD----SNEIT----ALMLLASDAFMQANYAQAIELWQKVM 142
Query: 283 QHEETAEEAKSLLRSIAQKRQ 303
L+ SI +
Sbjct: 143 DLNSPRINRTQLVESINMAKL 163
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response,
DNA repair, gene regulation; 2.05A {Mus musculus}
Length = 474
Score = 76.2 bits (187), Expect = 2e-15
Identities = 32/211 (15%), Positives = 74/211 (35%), Gaps = 16/211 (7%)
Query: 41 AFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSL---LRSIAQKRQPDESSS--QA 95
A+ L + K ++ +A+ C L H + ++L LR + + S +
Sbjct: 139 AWNQLGEVYWKKGDVTSAHTCFSGALTHCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDS 198
Query: 96 VLYFQRALKLNPNYLGVWTLLGHEYM--------EMKNTNAAIQCYRQAIEIN---NLDY 144
V + A++++ W +LG+ Y+ K + A+ Y QA +++ + +
Sbjct: 199 VRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNP 258
Query: 145 RAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKS 204
++ L + QA + P P + E +++ ++ K+
Sbjct: 259 DLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGKT 318
Query: 205 RAIGDADGKALFKLAKLYDKLNETEAAADLF 235
+ + A L + +A
Sbjct: 319 KPKKLQSMLGSLRPAHLGPCGDGRYQSASGQ 349
Score = 75.8 bits (186), Expect = 3e-15
Identities = 34/203 (16%), Positives = 70/203 (34%), Gaps = 23/203 (11%)
Query: 53 NNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDESSSQAVLYFQRALKLNPNYLGV 112
++ + ++ L + +A +L+ A PD S +A + +A+KL P +
Sbjct: 82 EEMEKTLQQMEEVLGSAQVEAQA-LMLKGKALNVTPDYSP-EAEVLLSKAVKLEPELVEA 139
Query: 113 WTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYG--------- 163
W LG Y + + +A C+ A+ + + L L+
Sbjct: 140 WNQLGEVYWKKGDVTSAHTCFSGALTHCK-NKVSLQNLSMVLRQLQTDSGDEHSRHVMDS 198
Query: 164 LYYYKQAHMVRPNDPRMLTALGEAF--------EKQEKISEAMKCYNKSRAIGD---ADG 212
+ K A + D R LG A+ + + +A+ Y ++ + ++
Sbjct: 199 VRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNP 258
Query: 213 KALFKLAKLYDKLNETEAAADLF 235
A L+ A + F
Sbjct: 259 DLHLNRATLHKYEESYGEALEGF 281
Score = 28.1 bits (62), Expect = 4.6
Identities = 17/107 (15%), Positives = 41/107 (38%), Gaps = 8/107 (7%)
Query: 183 ALGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKLAKLYDKLNETEAAADLFMEFVSKL 242
A + + QE++ + ++ + + +AL K + + A++ + KL
Sbjct: 73 AGRKQQDVQEEMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKL 132
Query: 243 DTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAE 289
+ P+ A+ L + K ++ +A+ C L H +
Sbjct: 133 E-----PELVE---AWNQLGEVYWKKGDVTSAHTCFSGALTHCKNKV 171
>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae}
Length = 1047
Score = 76.2 bits (187), Expect = 3e-15
Identities = 17/146 (11%), Positives = 40/146 (27%)
Query: 90 ESSSQAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYG 149
E+ + + +A L P + ++ + QA + A
Sbjct: 206 ETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQALETMQRLLPVLCQAHGLPPDQVVAIAS 265
Query: 150 LGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGD 209
+ L L QAH + P+ + + G + E + + ++ +
Sbjct: 266 NIGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHGGGKQALETVQRLLPVLCQAHGLTP 325
Query: 210 ADGKALFKLAKLYDKLNETEAAADLF 235
A+ L + +
Sbjct: 326 DQVVAIASHDGGKQALETVQRLLPVL 351
Score = 72.4 bits (177), Expect = 5e-14
Identities = 16/142 (11%), Positives = 39/142 (27%)
Query: 94 QAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQT 153
+ + +A L P+ + G ++ + QA + + A
Sbjct: 549 RLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQVQVVAIASNIGG 608
Query: 154 YEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGK 213
+ L L QAH + P + + + E + + ++ +
Sbjct: 609 KQALETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQVV 668
Query: 214 ALFKLAKLYDKLNETEAAADLF 235
A+ L + +
Sbjct: 669 AIASNGGGKQALETVQRLLPVL 690
Score = 67.4 bits (164), Expect = 2e-12
Identities = 18/142 (12%), Positives = 41/142 (28%)
Query: 94 QAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQT 153
+ + +A L P+ + G ++ + QA + A
Sbjct: 651 RLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQEQVVAIASNNGG 710
Query: 154 YEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGK 213
+ L L QAH + P+ + + G + E + + ++ + A
Sbjct: 711 KQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPAQVV 770
Query: 214 ALFKLAKLYDKLNETEAAADLF 235
A+ L + +
Sbjct: 771 AIASNIGGKQALETVQRLLPVL 792
Score = 67.0 bits (163), Expect = 3e-12
Identities = 17/142 (11%), Positives = 41/142 (28%), Gaps = 1/142 (0%)
Query: 94 QAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQT 153
+ + +A L P+ + G ++ + QA + A G
Sbjct: 346 RLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGK 405
Query: 154 YEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGK 213
+ + L QAH + P+ + + + E + + ++ + A
Sbjct: 406 QALETVQ-RLLPVLCQAHGLTPDQVVAIASHDGGKQALETVQRLLPVLCQTHGLTPAQVV 464
Query: 214 ALFKLAKLYDKLNETEAAADLF 235
A+ L + +
Sbjct: 465 AIASHDGGKQALETVQQLLPVL 486
Score = 66.6 bits (162), Expect = 4e-12
Identities = 18/154 (11%), Positives = 40/154 (25%)
Query: 94 QAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQT 153
Q + +A L P+ + + + QA + A G
Sbjct: 481 QLLPVLCQAHGLTPDQVVAIASNIGGKQALATVQRLLPVLCQAHGLTPDQVVAIASNGGG 540
Query: 154 YEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGK 213
+ L L QAH + P+ + + G + E + + ++ +
Sbjct: 541 KQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQVQVV 600
Query: 214 ALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAA 247
A+ L + + +
Sbjct: 601 AIASNIGGKQALETVQRLLPVLCQAHGLTPAQVV 634
Score = 64.3 bits (156), Expect = 2e-11
Identities = 15/142 (10%), Positives = 37/142 (26%)
Query: 94 QAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQT 153
+ + + L P + ++ + QA + A
Sbjct: 447 RLLPVLCQTHGLTPAQVVAIASHDGGKQALETVQQLLPVLCQAHGLTPDQVVAIASNIGG 506
Query: 154 YEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGK 213
+ L L QAH + P+ + + G + E + + ++ +
Sbjct: 507 KQALATVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQVV 566
Query: 214 ALFKLAKLYDKLNETEAAADLF 235
A+ L + +
Sbjct: 567 AIASNGGGKQALETVQRLLPVL 588
Score = 64.3 bits (156), Expect = 2e-11
Identities = 16/144 (11%), Positives = 38/144 (26%)
Query: 90 ESSSQAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYG 149
E+ + + +A L + ++ + QA + A
Sbjct: 579 ETVQRLLPVLCQAHGLTQVQVVAIASNIGGKQALETVQRLLPVLCQAHGLTPAQVVAIAS 638
Query: 150 LGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGD 209
+ L L QAH + P+ + + G + E + + ++ +
Sbjct: 639 HDGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQ 698
Query: 210 ADGKALFKLAKLYDKLNETEAAAD 233
A+ L +
Sbjct: 699 EQVVAIASNNGGKQALETVQRLLP 722
Score = 62.7 bits (152), Expect = 7e-11
Identities = 17/189 (8%), Positives = 47/189 (24%), Gaps = 6/189 (3%)
Query: 53 NNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQ------KRQPDESSSQAVLYFQRALKLN 106
+ + + + +A L +Q E+ + + +A L
Sbjct: 366 ASNGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGKQALETVQRLLPVLCQAHGLT 425
Query: 107 PNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYY 166
P+ + ++ + Q + A + L L
Sbjct: 426 PDQVVAIASHDGGKQALETVQRLLPVLCQTHGLTPAQVVAIASHDGGKQALETVQQLLPV 485
Query: 167 YKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKLAKLYDKLN 226
QAH + P+ + + + + + ++ + A+ L
Sbjct: 486 LCQAHGLTPDQVVAIASNIGGKQALATVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALE 545
Query: 227 ETEAAADLF 235
+ +
Sbjct: 546 TVQRLLPVL 554
Score = 56.6 bits (136), Expect = 6e-09
Identities = 17/146 (11%), Positives = 38/146 (26%)
Query: 90 ESSSQAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYG 149
E+ + + +A L + ++ + QA + A
Sbjct: 681 ETVQRLLPVLCQAHGLTQEQVVAIASNNGGKQALETVQRLLPVLCQAHGLTPDQVVAIAS 740
Query: 150 LGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGD 209
G + L L QAH + P + + + E + + + +
Sbjct: 741 NGGGKQALETVQRLLPVLCQAHGLTPAQVVAIASNIGGKQALETVQRLLPVLCQDHGLTL 800
Query: 210 ADGKALFKLAKLYDKLNETEAAADLF 235
A A+ L + +
Sbjct: 801 AQVVAIASNIGGKQALETVQRLLPVL 826
Score = 46.9 bits (111), Expect = 6e-06
Identities = 13/142 (9%), Positives = 34/142 (23%)
Query: 94 QAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQT 153
+ + +A L P + ++ + Q + A
Sbjct: 753 RLLPVLCQAHGLTPAQVVAIASNIGGKQALETVQRLLPVLCQDHGLTLAQVVAIASNIGG 812
Query: 154 YEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGK 213
+ L L QAH + + + + + E + + + +
Sbjct: 813 KQALETVQRLLPVLCQAHGLTQDQVVAIASNIGGKQALETVQRLLPVLCQDHGLTPDQVV 872
Query: 214 ALFKLAKLYDKLNETEAAADLF 235
A+ L + +
Sbjct: 873 AIASNIGGKQALETVQRLLPVL 894
Score = 40.4 bits (94), Expect = 7e-04
Identities = 12/130 (9%), Positives = 32/130 (24%)
Query: 90 ESSSQAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYG 149
E+ + + + L + ++ + QA + A
Sbjct: 783 ETVQRLLPVLCQDHGLTLAQVVAIASNIGGKQALETVQRLLPVLCQAHGLTQDQVVAIAS 842
Query: 150 LGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGD 209
+ L L Q H + P+ + + + E + + + +
Sbjct: 843 NIGGKQALETVQRLLPVLCQDHGLTPDQVVAIASNIGGKQALETVQRLLPVLCQDHGLTL 902
Query: 210 ADGKALFKLA 219
A+
Sbjct: 903 DQVVAIASNG 912
Score = 38.5 bits (89), Expect = 0.004
Identities = 13/126 (10%), Positives = 34/126 (26%), Gaps = 1/126 (0%)
Query: 90 ESSSQAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYG 149
E+ + + + L P+ + ++ + Q + A
Sbjct: 851 ETVQRLLPVLCQDHGLTPDQVVAIASNIGGKQALETVQRLLPVLCQDHGLTLDQVVAIAS 910
Query: 150 LGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGD 209
G + L L Q H + P+ + + + E + + + +
Sbjct: 911 NGG-KQALETVQRLLPVLCQDHGLTPDQVVAIASNSGGKQALETVQRLLPVLCQDHGLTP 969
Query: 210 ADGKAL 215
A+
Sbjct: 970 NQVVAI 975
Score = 38.1 bits (88), Expect = 0.004
Identities = 16/174 (9%), Positives = 41/174 (23%), Gaps = 5/174 (2%)
Query: 67 QHEETAEEAKSLLRSIAQKRQPDESSSQAVLYFQRALKLNP-----NYLGVWTLLGHEYM 121
QH E I Q + + +Q + P + +GV
Sbjct: 76 QHHEALVGHGFTHAHIVALSQHPAALGTVAVTYQHIITALPEATHEDIVGVGKQWSGARA 135
Query: 122 EMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRML 181
A + ++++ G + + + P +
Sbjct: 136 LEALLTDAGELRGPPLQLDTGQLVKIAKRGGVTAMEAVHASRNALTGAPLNLTPAQVVAI 195
Query: 182 TALGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKLAKLYDKLNETEAAADLF 235
+ + E + + ++ + A A+ L + +
Sbjct: 196 ASNNGGKQALETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQALETMQRLLPVL 249
Score = 35.0 bits (80), Expect = 0.043
Identities = 14/126 (11%), Positives = 35/126 (27%), Gaps = 6/126 (4%)
Query: 84 QKRQPDESSSQAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLD 143
+Q E+ + + + L P+ + ++ + Q +
Sbjct: 912 GGKQALETVQRLLPVLCQDHGLTPDQVVAIASNSGGKQALETVQRLLPVLCQDHGLTPNQ 971
Query: 144 YRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALG-----EAFEKQEKIS-EA 197
A G + + + + L LG +A +K + E
Sbjct: 972 VVAIASNGGKQALESIVAQLSRPDPALAALTNDHLVALACLGGRPAMDAVKKGLPHAPEL 1031
Query: 198 MKCYNK 203
++ N+
Sbjct: 1032 IRRVNR 1037
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown
function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Length = 275
Score = 72.7 bits (179), Expect = 6e-15
Identities = 33/193 (17%), Positives = 62/193 (32%), Gaps = 13/193 (6%)
Query: 94 QAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQT 153
A F +AL + P+ V+ LG + N +AA + + +E++ A G
Sbjct: 61 LARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIA 120
Query: 154 YEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEA---FEKQEKISEAMKCYNKSRAIGDA 210
+ PNDP L A ++++ + + KS
Sbjct: 121 LYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWG 180
Query: 211 DGKALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANN 270
F L + ++ AD + L + YL ++L +
Sbjct: 181 WNIVEFYLGNISEQTLMERLKADA--TDNTSLA-----EHLS---ETNFYLGKYYLSLGD 230
Query: 271 LDTAYKCAQKCLQ 283
LD+A + +
Sbjct: 231 LDSATALFKLAVA 243
Score = 66.9 bits (164), Expect = 7e-13
Identities = 19/135 (14%), Positives = 30/135 (22%)
Query: 100 QRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRL 159
+ + G Y + A + QA+ I + LG
Sbjct: 33 ASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGN 92
Query: 160 PYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKLA 219
+ + P G A + A D L
Sbjct: 93 FDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLY 152
Query: 220 KLYDKLNETEAAADL 234
KL+E +A L
Sbjct: 153 LAEQKLDEKQAKEVL 167
Score = 55.8 bits (135), Expect = 4e-09
Identities = 15/117 (12%), Positives = 38/117 (32%), Gaps = 5/117 (4%)
Query: 43 KYLANHHLKANN-LDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDESSSQAVLYFQR 101
YLA L + + +K + + + L +I+++ +
Sbjct: 151 LYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMER----LKADATD 206
Query: 102 ALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILR 158
L + LG Y+ + + ++A ++ A+ N ++ +L
Sbjct: 207 NTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEHRYALLELSLLG 263
Score = 51.5 bits (124), Expect = 9e-08
Identities = 28/170 (16%), Positives = 50/170 (29%), Gaps = 7/170 (4%)
Query: 41 AFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDESSSQAVLYFQ 100
F YL + +A N D AY+ L+ + T A L R IA A
Sbjct: 79 VFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAH-LNRGIALYYG--GRDKLAQDDLL 135
Query: 101 RALKLNPNYLGVWTLLGHEYMEMKNTNAA---IQCYRQAIEINNLDYRAWYGLGQTYEIL 157
+ +PN L ++ A Q + ++ + + LG E
Sbjct: 136 AFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQT 195
Query: 158 RLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAI 207
+ + + LG+ + + A + + A
Sbjct: 196 LMERL-KADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN 244
Score = 45.4 bits (108), Expect = 1e-05
Identities = 19/132 (14%), Positives = 37/132 (28%), Gaps = 4/132 (3%)
Query: 113 WTLLGHEYMEMKNTNAAIQCYRQAIE----INNLDYRAWYGLGQTYEILRLPYYGLYYYK 168
+L + Q + ++ + Y G Y+ L L +
Sbjct: 8 SEVLAVPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFS 67
Query: 169 QAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKLAKLYDKLNET 228
QA +RP+ P + LG + A + ++ + A
Sbjct: 68 QALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRD 127
Query: 229 EAAADLFMEFVS 240
+ A D + F
Sbjct: 128 KLAQDDLLAFYQ 139
Score = 36.9 bits (86), Expect = 0.005
Identities = 6/42 (14%), Positives = 11/42 (26%)
Query: 94 QAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQ 135
A F+ A+ N + E + + Q
Sbjct: 233 SATALFKLAVANNVHNFVEHRYALLELSLLGQDQDDLAESDQ 274
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat,
TPR; 3.00A {Mus musculus}
Length = 365
Score = 72.8 bits (179), Expect = 1e-14
Identities = 25/155 (16%), Positives = 47/155 (30%), Gaps = 12/155 (7%)
Query: 93 SQAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQ 152
+L+ + A+ +P W LG E +N AAI ++ +E+ + +A L
Sbjct: 82 PVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAV 141
Query: 153 TYEILRLPYYGLYYYKQAHMVRPNDP----------RMLTALGEAFEKQEKISEAMKCYN 202
+Y K P + + ++ + + Y
Sbjct: 142 SYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYL 201
Query: 203 KSRAI--GDADGKALFKLAKLYDKLNETEAAADLF 235
++ D L L+ E A D F
Sbjct: 202 EAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAF 236
Score = 66.2 bits (162), Expect = 3e-12
Identities = 23/164 (14%), Positives = 47/164 (28%)
Query: 68 HEETAEEAKSLLRSIAQKRQPDESSSQAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTN 127
E E A+ S Q+ Q + S + + + G + ++ +
Sbjct: 23 QAEWEEMARRNWISENQEAQNQVTVSASEKGYYFHTENPFKDWPGAFEEGLKRLKEGDLP 82
Query: 128 AAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEA 187
I AI + D AW LG T + ++ ++PN+ + L AL +
Sbjct: 83 VTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVS 142
Query: 188 FEKQEKISEAMKCYNKSRAIGDADGKALFKLAKLYDKLNETEAA 231
+ +A + + +
Sbjct: 143 YTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKS 186
Score = 59.3 bits (144), Expect = 4e-10
Identities = 22/123 (17%), Positives = 40/123 (32%), Gaps = 12/123 (9%)
Query: 94 QAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQT 153
+A+ F AL + P +W LG + A++ Y +A+EI R+ Y LG +
Sbjct: 231 RAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGIS 290
Query: 154 YEILRLPYYGLYYYKQAHMVRPNDP------------RMLTALGEAFEKQEKISEAMKCY 201
L + + A ++ + AL A ++
Sbjct: 291 CINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAAN 350
Query: 202 NKS 204
Sbjct: 351 LGD 353
Score = 35.0 bits (81), Expect = 0.031
Identities = 14/111 (12%), Positives = 23/111 (20%), Gaps = 8/111 (7%)
Query: 129 AIQCYRQAIEI--------NNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRM 180
A E + R W Q + Y D
Sbjct: 8 AKAAVESDTEFWDKMQAEWEEMARRNWISENQEAQNQVTVSASEKGYYFHTENPFKDWPG 67
Query: 181 LTALGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKLAKLYDKLNETEAA 231
G K+ + + + D +A L + +AA
Sbjct: 68 AFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAA 118
Score = 30.0 bits (68), Expect = 1.2
Identities = 7/66 (10%), Positives = 14/66 (21%), Gaps = 19/66 (28%)
Query: 94 QAVLYFQRALKLNPNYLGVWTLLGHEY-------------------MEMKNTNAAIQCYR 134
+AV F AL L + + +
Sbjct: 299 EAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLGDLDVLL 358
Query: 135 QAIEIN 140
+A ++
Sbjct: 359 RAFNLD 364
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex,
tetratricopeptide repeat, TPR, helical repeat, signaling
protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB:
2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Length = 368
Score = 71.2 bits (175), Expect = 5e-14
Identities = 28/154 (18%), Positives = 57/154 (37%), Gaps = 6/154 (3%)
Query: 74 EAKSLLRSIAQKRQPDESSSQAVLYFQRALKLNPNYL--GVWTLLGHEYMEMKNTNAAIQ 131
+K +L S+ E F A++L+P + V LG + + A+
Sbjct: 183 PSKRILGSLLSDSLFLE----VKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVD 238
Query: 132 CYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQ 191
C+ A+ + DY W LG T + Y++A ++P R LG +
Sbjct: 239 CFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINL 298
Query: 192 EKISEAMKCYNKSRAIGDADGKALFKLAKLYDKL 225
EA++ + ++ + + + + +
Sbjct: 299 GAHREAVEHFLEALNMQRKSRGPRGEGGAMSENI 332
Score = 70.8 bits (174), Expect = 7e-14
Identities = 36/218 (16%), Positives = 65/218 (29%), Gaps = 26/218 (11%)
Query: 40 FAFKYLANHHLKANNLDTAYKCAQKCLQHEET-----AEEAKSLLRSIAQKRQPDESSSQ 94
A + H ++ D K Q EE + Q+
Sbjct: 27 MAKRDAEAHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPN---- 82
Query: 95 AVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTY 154
AVL F+ A++ +P ++ W LG E + AI R+ +E+ + A L ++
Sbjct: 83 AVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSF 142
Query: 155 EILRLPYYGLYYYKQAHMVRPNDPRMLTALGE---------------AFEKQEKISEAMK 199
L + P ++T E + E +
Sbjct: 143 TNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKE 202
Query: 200 CYNKSRAI--GDADGKALFKLAKLYDKLNETEAAADLF 235
+ + + D L L++ E + A D F
Sbjct: 203 LFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCF 240
Score = 67.8 bits (166), Expect = 7e-13
Identities = 23/125 (18%), Positives = 44/125 (35%), Gaps = 11/125 (8%)
Query: 94 QAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQT 153
+AV F AL + PN +W LG + A+ YR+A+E+ R+ Y LG +
Sbjct: 235 KAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGIS 294
Query: 154 YEILRLPYYGLYYYKQAHMVRPNDP-----------RMLTALGEAFEKQEKISEAMKCYN 202
L + ++ +A ++ + + L A +
Sbjct: 295 CINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADA 354
Query: 203 KSRAI 207
+ +
Sbjct: 355 RDLST 359
Score = 61.2 bits (149), Expect = 1e-10
Identities = 25/194 (12%), Positives = 52/194 (26%), Gaps = 16/194 (8%)
Query: 99 FQRALKLNPNYLGVWTLLGHEYMEMKNT------------NAAIQCYRQAIEINN----L 142
F+RA + + W L E EM + Y + +
Sbjct: 3 FERAKSAIESDVDFWDKLQAELEEMAKRDAEAHPWLSDYDDLTSATYDKGYQFEEENPLR 62
Query: 143 DYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYN 202
D+ + G + ++ A P LG + E+ A+
Sbjct: 63 DHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALR 122
Query: 203 KSRAIGDADGKALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLA 262
+ + + AL LA + + A ++ +++ +A L
Sbjct: 123 RCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLG 182
Query: 263 NHHLKANNLDTAYK 276
+L +
Sbjct: 183 PSKRILGSLLSDSL 196
Score = 37.7 bits (88), Expect = 0.004
Identities = 9/59 (15%), Positives = 17/59 (28%), Gaps = 11/59 (18%)
Query: 94 QAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNT-----------NAAIQCYRQAIEINN 141
+AV +F AL + G G + +T +A + +
Sbjct: 303 EAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDLSTLL 361
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide
repeat, response regulator helix-turn-HELX binding,
3-helix bundle; 2.30A {Bacillus subtilis}
Length = 383
Score = 69.5 bits (170), Expect = 2e-13
Identities = 46/311 (14%), Positives = 101/311 (32%), Gaps = 36/311 (11%)
Query: 1 MRNKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYK 60
M L + + ++D A ++ + + L +A K
Sbjct: 65 MLEYLEPLEKMRIEEQPRLSDLLLEIDKKQARLTGLLEYYFNFFRGMYELDQREYLSAIK 124
Query: 61 CAQKCLQH----EETAEEAKSLLR-SIAQKRQPDESSSQAVLYFQRALKLNPNYLG---- 111
+K ++ E+A+ + S + + ++ Y ++A ++ +
Sbjct: 125 FFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQ--TYFSMDYARQAYEIYKEHEAYNIR 182
Query: 112 ---VWTLLGHEYMEMKNTNAAIQCYRQAIEINN-LDYR-----AWYGLGQTYEILRLPYY 162
+L ++++K AI +++A + Y +G
Sbjct: 183 LLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYED 242
Query: 163 GLYYYKQAHMV------RPNDPRMLTALGEAFEKQEKISEAMKCYNKS----RAIGDADG 212
+ Y+K+A V P+ P+ + + K KI +A + ++K + GD
Sbjct: 243 AIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIY 302
Query: 213 KALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLD 272
+ F+ K E A F +F+ +A D +A ++ + N
Sbjct: 303 LSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLED------FAIDVAKYYHERKNFQ 356
Query: 273 TAYKCAQKCLQ 283
A K Q
Sbjct: 357 KASAYFLKVEQ 367
Score = 53.7 bits (129), Expect = 4e-08
Identities = 20/180 (11%), Positives = 61/180 (33%), Gaps = 18/180 (10%)
Query: 45 LANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRS---IAQKRQPDESSSQAVLYFQR 101
A + L + A QK E ++ + + R+ I + A+ YF+R
Sbjct: 190 FATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKR 249
Query: 102 ALKLN------PNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEI----NNLDYRAWY--- 148
A+ + P+ + L+ + ++ + A + + + + ++ Y + +
Sbjct: 250 AIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFL 309
Query: 149 -GLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAI 207
L + + + + + + + + +++ +A + K +
Sbjct: 310 KSLYLSGPDEEAIQGFFDFLESKML-YADLEDFAIDVAKYYHERKNFQKASAYFLKVEQV 368
Score = 35.2 bits (81), Expect = 0.027
Identities = 14/101 (13%), Positives = 32/101 (31%), Gaps = 6/101 (5%)
Query: 45 LANHHLKANNLDTAYKCAQKCLQ-----HEETAEEAKSLLRSIAQKRQPDESSSQAVLYF 99
+ H K +D A++ K + + L+S+ +E+ +
Sbjct: 270 ITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFL 329
Query: 100 QRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEIN 140
+ L + + Y E KN A + + ++
Sbjct: 330 ESK-MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQVR 369
>3q15_A PSP28, response regulator aspartate phosphatase H;
tetratricopeptide repeat, 3-helix bundle, phosphorelay
signa transduction, phosphatase; 2.19A {Bacillus
subtilis}
Length = 378
Score = 67.9 bits (166), Expect = 7e-13
Identities = 30/302 (9%), Positives = 92/302 (30%), Gaps = 29/302 (9%)
Query: 6 YDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKC 65
Y + +T E + ++T +++ + + A ++
Sbjct: 68 YLEPGKTYGNRPTVTELLETIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREA 127
Query: 66 LQ----HEETAEEAKSLLR-SIAQKRQPDESSSQAVLYFQRALKL-------NPNYLGVW 113
+ + E+A+ + + A + + ++ + +AL + + +
Sbjct: 128 EKELPFVSDDIEKAEFHFKVAEAYYHM--KQTHVSMYHILQALDIYQNHPLYSIRTIQSL 185
Query: 114 TLLGHEYMEMKNTNAAIQCYRQAIEINNLDY------RAWYGLGQTYEILRLPYYGLYYY 167
++ Y + K+ + A+ A+E+ + + +Y+ + ++
Sbjct: 186 FVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHF 245
Query: 168 KQA-----HMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIG-DADGKALFKLAKL 221
++A V P++L L K + +A + + K +L
Sbjct: 246 QKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLF 305
Query: 222 YDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKC 281
+ + + +S + + A + + + A +K
Sbjct: 306 LQAVYKETVDERKIHDLLSYFEKKNLHAYIE---ACARSAAAVFESSCHFEQAAAFYRKV 362
Query: 282 LQ 283
L+
Sbjct: 363 LK 364
Score = 52.5 bits (126), Expect = 8e-08
Identities = 27/181 (14%), Positives = 59/181 (32%), Gaps = 21/181 (11%)
Query: 45 LANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRS-----IAQKRQPDESSSQAVLYF 99
+A ++ + D A + L+ + + + S + R D AV +F
Sbjct: 188 IAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGD--DQMAVEHF 245
Query: 100 QRALKLN-----PNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEI----NNLDYRAWY-- 148
Q+A K++ V L + T A Q + ++ ++ Y+ +
Sbjct: 246 QKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLF 305
Query: 149 --GLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRA 206
+ + R + L Y+++ ++ + FE +A Y K
Sbjct: 306 LQAVYKETVDERKIHDLLSYFEKKNL-HAYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364
Query: 207 I 207
Sbjct: 365 A 365
Score = 33.6 bits (77), Expect = 0.091
Identities = 28/210 (13%), Positives = 64/210 (30%), Gaps = 33/210 (15%)
Query: 117 GHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPN 176
++ + + A + + L Y ++ + + Y + N
Sbjct: 19 WYKMIRQFSVPDAEILKAEVEQDIQ-QMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGN 77
Query: 177 DPRMLTAL----------------------GEAFEKQEKISEAMKCYNKS----RAIGDA 210
P + L G Q++ EA+ Y ++ + D
Sbjct: 78 RPTVTELLETIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDD 137
Query: 211 DGKA--LFKLAKLYDKLNETEAAADLFMEFVSKLDTF-AAPPDKTCGFFAFKYLANHHLK 267
KA FK+A+ Y + +T + ++ LD + P + +A ++
Sbjct: 138 IEKAEFHFKVAEAYYHMKQTHVSMYHILQ---ALDIYQNHPLYSIRTIQSLFVIAGNYDD 194
Query: 268 ANNLDTAYKCAQKCLQHEETAEEAKSLLRS 297
+ D A + L+ + + + S
Sbjct: 195 FKHYDKALPHLEAALELAMDIQNDRFIAIS 224
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical,
transport protein; 1.60A {Trypanosoma brucei} SCOP:
a.118.8.1
Length = 121
Score = 62.9 bits (153), Expect = 2e-12
Identities = 15/84 (17%), Positives = 27/84 (32%)
Query: 93 SQAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQ 152
++A L F+ + P W LG E + AI A ++ D L
Sbjct: 34 AEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAV 93
Query: 153 TYEILRLPYYGLYYYKQAHMVRPN 176
++ L + + +P
Sbjct: 94 SHTNEHNANAALASLRAWLLSQPQ 117
Score = 61.7 bits (150), Expect = 3e-12
Identities = 15/91 (16%), Positives = 27/91 (29%)
Query: 113 WTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHM 172
G +++ N A + + AW LG T + A M
Sbjct: 20 PMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARM 79
Query: 173 VRPNDPRMLTALGEAFEKQEKISEAMKCYNK 203
+ P D + AL + + + A+
Sbjct: 80 LDPKDIAVHAALAVSHTNEHNANAALASLRA 110
Score = 55.5 bits (134), Expect = 5e-10
Identities = 24/97 (24%), Positives = 33/97 (34%), Gaps = 3/97 (3%)
Query: 44 YLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDESSSQAVLYFQRAL 103
LK NL A + Q E EEA L + Q E A++ A
Sbjct: 22 EEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSL-GLTQAEN--EKDGLAIIALNHAR 78
Query: 104 KLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEIN 140
L+P + V L + N NAA+ R +
Sbjct: 79 MLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQ 115
Score = 34.7 bits (80), Expect = 0.009
Identities = 14/101 (13%), Positives = 24/101 (23%), Gaps = 9/101 (8%)
Query: 184 LGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKLAKLYDKLNETEAAADLFMEFVSKLD 243
G + K ++EA + +A L + + A
Sbjct: 23 EGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDP 82
Query: 244 TFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQH 284
A LA H +N + A + L
Sbjct: 83 KDIA---------VHAALAVSHTNEHNANAALASLRAWLLS 114
Score = 31.7 bits (72), Expect = 0.13
Identities = 9/70 (12%), Positives = 18/70 (25%), Gaps = 5/70 (7%)
Query: 41 AFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEA-KSLLRSIAQKRQPDESSSQAVLYF 99
A++ L + A + +L S + + A+
Sbjct: 53 AWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANA----ALASL 108
Query: 100 QRALKLNPNY 109
+ L P Y
Sbjct: 109 RAWLLSQPQY 118
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A
{Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Length = 125
Score = 59.3 bits (145), Expect = 2e-11
Identities = 31/104 (29%), Positives = 54/104 (51%), Gaps = 1/104 (0%)
Query: 105 LNP-NYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYG 163
++P N W LG+ Y + + + AI+ Y++A+E++ + AWY LG Y
Sbjct: 3 MDPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEA 62
Query: 164 LYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAI 207
+ YY++A + PN+ LG A+ KQ EA++ Y K+ +
Sbjct: 63 IEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 106
Score = 54.7 bits (133), Expect = 1e-09
Identities = 33/98 (33%), Positives = 56/98 (57%)
Query: 94 QAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQT 153
+A+ Y+Q+AL+L+PN W LG+ Y + + + AI+ Y++A+E++ + AWY LG
Sbjct: 27 EAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNA 86
Query: 154 YEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQ 191
Y + YY++A + PN+ LG A +KQ
Sbjct: 87 YYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQ 124
>2kat_A Uncharacterized protein; NESG, structure, structural genomics,
PSI-2, protein structure initiative; NMR {Bordetella
parapertussis}
Length = 115
Score = 58.9 bits (143), Expect = 3e-11
Identities = 16/112 (14%), Positives = 38/112 (33%), Gaps = 2/112 (1%)
Query: 93 SQAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQ 152
+ L + + + LG Y E + +AA+ R A++ + AW LG+
Sbjct: 2 QAITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGK 61
Query: 153 TYEILRLPYYGLYYYKQAHMVRPN--DPRMLTALGEAFEKQEKISEAMKCYN 202
T + ++ + D +++ L + + ++
Sbjct: 62 TLQGQGDRAGARQAWESGLAAAQSRGDQQVVKELQVFLRRLAREDALEHHHH 113
Score = 40.4 bits (95), Expect = 9e-05
Identities = 15/121 (12%), Positives = 24/121 (19%), Gaps = 39/121 (32%)
Query: 40 FAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDESSSQAVLYF 99
L + + D A
Sbjct: 20 LLRFTLGKTYAEHEQFDAALPH-------------------------------------L 42
Query: 100 QRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEI--NNLDYRAWYGLGQTYEIL 157
+ AL +P Y W LG + A Q + + + D + L L
Sbjct: 43 RAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAAAQSRGDQQVVKELQVFLRRL 102
Query: 158 R 158
Sbjct: 103 A 103
Score = 38.5 bits (90), Expect = 5e-04
Identities = 8/69 (11%), Positives = 20/69 (28%)
Query: 167 YKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKLAKLYDKLN 226
+ ++ + LG+ + + E+ A+ + A L K
Sbjct: 8 LEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQG 67
Query: 227 ETEAAADLF 235
+ A +
Sbjct: 68 DRAGARQAW 76
Score = 29.6 bits (67), Expect = 0.52
Identities = 14/93 (15%), Positives = 29/93 (31%), Gaps = 9/93 (9%)
Query: 194 ISEAMKCYNKSRAIGDADGKALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTC 253
+ + A G + F L K Y + + +AA + T++
Sbjct: 1 MQAITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSV------ 54
Query: 254 GFFAFKYLANHHLKANNLDTAYKCAQKCLQHEE 286
A+K+L + A + + L +
Sbjct: 55 ---AWKWLGKTLQGQGDRAGARQAWESGLAAAQ 84
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 62.6 bits (151), Expect = 8e-11
Identities = 43/266 (16%), Positives = 77/266 (28%), Gaps = 53/266 (19%)
Query: 52 ANNLDTAYKCAQKCLQHEE---TAEEAKSLLRSIAQKRQPDESSSQAVLYFQRALKLNPN 108
+ L A L H T +E KSLL R P + + L NP
Sbjct: 278 TDFLSAATTT-HISLDHHSMTLTPDEVKSLLLKYLDCR-PQDLPRE-------VLTTNPR 328
Query: 109 YLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYK 168
L ++ + T ++ + + L + + +L Y + +
Sbjct: 329 RLS---IIAESIRDGLAT---WDNWKH-VNCDKLT-TI---IESSLNVLEPAEYRKMFDR 377
Query: 169 QAHMVRPND----PRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKLAKLYDK 224
+ V P +L+ + K + + K + S ++ + +Y +
Sbjct: 378 LS--VFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPK-ESTISIPSIYLE 434
Query: 225 LNET-EAAADLFMEFV------SKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKC 277
L E L V D+ P +F + ++ HHLK
Sbjct: 435 LKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYF-YSHIG-HHLK---------- 482
Query: 278 AQKCLQHEETAEEAKSLL--RSIAQK 301
E L R + QK
Sbjct: 483 --NIEHPERMTLFRMVFLDFRFLEQK 506
Score = 39.5 bits (91), Expect = 0.001
Identities = 57/350 (16%), Positives = 101/350 (28%), Gaps = 99/350 (28%)
Query: 47 NHHLKANNLDTAYKCAQKCLQHEETA-------EEAKSLLRSIAQKR-------QPDESS 92
+HH+ + Y+ + L E A ++ + + +SI K D S
Sbjct: 4 HHHMDFETGEHQYQY-KDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVS 62
Query: 93 SQAVLY----------FQRALK--LNPNYLGVWTLLGHEYME--------------MKNT 126
L+ Q+ ++ L NY + + + E + + N
Sbjct: 63 GTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYND 122
Query: 127 NAAIQCY-----------RQAI-EINNLDYRAWYGLG------------QTYEILRLPYY 162
N Y RQA+ E+ G+ +Y++ +
Sbjct: 123 NQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDF 182
Query: 163 GLYYYKQAHMVRPND-PRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADG--KALFKLA 219
+++ + P ML L + S + N I + L K
Sbjct: 183 KIFWLNLKNCNSPETVLEMLQKLLYQID-PNWTSRSDHSSNIKLRIHSIQAELRRLLKSK 241
Query: 220 KLYDKLNETEAAADLFMEFVSK---LDTFAAPPDKTCGFFAFKYLANHHLK--ANNLDTA 274
+ L L + V + F + +C K L K + L A
Sbjct: 242 PYENCL--------LVLLNVQNAKAWNAF----NLSC-----KILLTTRFKQVTDFLSAA 284
Query: 275 YKCAQKCLQHEE---TAEEAKSLLRSIAQKRQ---PDESSS-QPMECAVV 317
L H T +E KSLL R P E + P +++
Sbjct: 285 TTT-HISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSII 333
Score = 29.1 bits (64), Expect = 3.0
Identities = 27/159 (16%), Positives = 44/159 (27%), Gaps = 48/159 (30%)
Query: 21 EFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLL- 79
D+ P +F + ++ + HLK E L
Sbjct: 454 NIPKTFDSDDLIPPYLDQYF-YSHIGH-HLK------------NIEHPERMTLFRMVFLD 499
Query: 80 -RSIAQKRQPDESSSQAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIE 138
R + QK + D ++ W G + NT ++ Y+ I
Sbjct: 500 FRFLEQKIRHDSTA--------------------WNASG----SILNTLQQLKFYKPYIC 535
Query: 139 INNLDYRAWYGLGQTYEILR-LPYYG--LYYYKQAHMVR 174
N+ Y IL LP L K ++R
Sbjct: 536 DNDPKYER-----LVNAILDFLPKIEENLICSKYTDLLR 569
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR),
beta-hairpin, alpha-solenoi transport protein; 2.60A
{Bos taurus}
Length = 291
Score = 60.9 bits (147), Expect = 1e-10
Identities = 18/205 (8%), Positives = 50/205 (24%), Gaps = 8/205 (3%)
Query: 41 AFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDESSSQAVLYFQ 100
A + A + + D + + LL A D++ A+
Sbjct: 67 AVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLL-MAASIYFYDQNPDAALRTLH 125
Query: 101 RALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLP 160
+ L + +++ + A + ++ + +
Sbjct: 126 QGDSLECMAM-----TVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGE 180
Query: 161 YYG--LYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKL 218
Y +++ +L Q + A ++ + L L
Sbjct: 181 KLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINL 240
Query: 219 AKLYDKLNETEAAADLFMEFVSKLD 243
L L + + ++ +
Sbjct: 241 VVLSQHLGKPPEVTNRYLSQLKDAH 265
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown
function, PSI-2, protein structure initiative; NMR
{Methanococcus maripaludis}
Length = 112
Score = 55.9 bits (136), Expect = 4e-10
Identities = 11/86 (12%), Positives = 30/86 (34%), Gaps = 2/86 (2%)
Query: 94 QAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEI--NNLDYRAWYGLG 151
+++ F++A++L+P W + G ++ A+ CY I + + + W
Sbjct: 24 ESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKA 83
Query: 152 QTYEILRLPYYGLYYYKQAHMVRPND 177
+ + + +
Sbjct: 84 DALRYIEGKEVEAEIAEARAKLEHHH 109
Score = 55.2 bits (134), Expect = 6e-10
Identities = 14/106 (13%), Positives = 30/106 (28%), Gaps = 4/106 (3%)
Query: 105 LNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGL 164
+ + L G + N +I + +AI+++ + + W G+ L +
Sbjct: 1 MVDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAV 60
Query: 165 YYYKQAHMVRPNDPRMLTA---LGEAFEKQEKISEAMKCYNKSRAI 207
Y V D +A E + +
Sbjct: 61 DCYNYVINVIE-DEYNKDVWAAKADALRYIEGKEVEAEIAEARAKL 105
Score = 38.6 bits (91), Expect = 3e-04
Identities = 3/52 (5%), Positives = 14/52 (26%), Gaps = 2/52 (3%)
Query: 95 AVLYFQRALKLNPNYLGV--WTLLGHEYMEMKNTNAAIQCYRQAIEINNLDY 144
AV + + + + W ++ + ++ + +
Sbjct: 59 AVDCYNYVINVIEDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHHHH 110
Score = 29.3 bits (67), Expect = 0.56
Identities = 9/57 (15%), Positives = 17/57 (29%)
Query: 175 PNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKLAKLYDKLNETEAA 231
+P G +E++ + K+ + + K K L E A
Sbjct: 3 DQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEA 59
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle
orientation, asymmetric CEL divisions; 2.10A {Drosophila
melanogaster}
Length = 411
Score = 56.2 bits (136), Expect = 5e-09
Identities = 25/174 (14%), Positives = 48/174 (27%), Gaps = 22/174 (12%)
Query: 94 QAVLYFQRALKL------NPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYR-- 145
+ + L G + A + ++ AI+ D R
Sbjct: 26 GGTNSHDGNSQQGSGSDGGSSMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTL 85
Query: 146 --AWYGLGQTYEILRLPYYGLYYYKQAHMV------RPNDPRMLTALGEAFEKQEKISEA 197
+ LG Y L + Y+K + R + + LG + + EA
Sbjct: 86 SAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEA 145
Query: 198 MKCYNKS----RAIGDADGKA--LFKLAKLYDKLNETEAAADLFMEFVSKLDTF 245
C + R +GD + L+ L +Y + + +
Sbjct: 146 AICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEAL 199
Score = 52.3 bits (126), Expect = 9e-08
Identities = 21/132 (15%), Positives = 47/132 (35%), Gaps = 18/132 (13%)
Query: 94 QAVLYFQRALKL------NPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEI-----NNL 142
A+ + Q L++ + LG+ ++ + A + Y++ + +
Sbjct: 241 AAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGERE 300
Query: 143 DY-RAWYGLGQTYEILRLPYYGLYYYKQAHMV------RPNDPRMLTALGEAFEKQEKIS 195
++ Y LG TY +L + Y+ + + R + R +LG A
Sbjct: 301 VEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHE 360
Query: 196 EAMKCYNKSRAI 207
A+K + +
Sbjct: 361 RALKYAEQHLQL 372
Score = 47.7 bits (114), Expect = 3e-06
Identities = 16/136 (11%), Positives = 40/136 (29%), Gaps = 16/136 (11%)
Query: 116 LGHEYMEMKNTNAAIQCYRQAIEINNLDY------RAWYGLGQTYEILRLPYYGLYYYKQ 169
+ + + + + + G+ G+ +++
Sbjct: 14 ENVSSLGLGSGGGGTNSHDGNSQQGSGSDGGSSMCLELALEGERLCNAGDCRAGVAFFQA 73
Query: 170 AHMVRPNDPR----MLTALGEAFEKQEKISEAMKCYNKS----RAIGDADG--KALFKLA 219
A D R + + LG A+ ++AM+ + +++ D G K+ L
Sbjct: 74 AIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLG 133
Query: 220 KLYDKLNETEAAADLF 235
+ + AA
Sbjct: 134 NTLKVMGRFDEAAICC 149
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics,
PSI-2, protein structure initiative; 2.80A {Salinibacter
ruber} PDB: 2kcl_A 2kcv_A
Length = 100
Score = 52.3 bits (126), Expect = 5e-09
Identities = 16/66 (24%), Positives = 29/66 (43%), Gaps = 2/66 (3%)
Query: 94 QAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEI--NNLDYRAWYGLG 151
+A+ F+ ++ +P+Y+G + LG Y + T+ AI Y Q IE+ + L
Sbjct: 25 RALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQKDLSELQ 84
Query: 152 QTYEIL 157
Sbjct: 85 DAKLKA 90
Score = 51.1 bits (123), Expect = 1e-08
Identities = 20/91 (21%), Positives = 37/91 (40%), Gaps = 2/91 (2%)
Query: 106 NPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLY 165
+P L E+++ N + A+ + + +E + +Y LG+ YE L +
Sbjct: 3 DPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAID 62
Query: 166 YYKQAHMVRPN--DPRMLTALGEAFEKQEKI 194
Y Q V + L+ L +A K E +
Sbjct: 63 TYAQGIEVAREEGTQKDLSELQDAKLKAEGL 93
Score = 40.3 bits (95), Expect = 8e-05
Identities = 16/61 (26%), Positives = 27/61 (44%)
Query: 175 PNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKLAKLYDKLNETEAAADL 234
P DP AL + K + S A+ + + + L KLY++L+ T+ A D
Sbjct: 4 PEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDT 63
Query: 235 F 235
+
Sbjct: 64 Y 64
>3k9i_A BH0479 protein; putative protein binding protein, structural
genomics, joint for structural genomics, JCSG; 2.71A
{Bacillus halodurans}
Length = 117
Score = 52.4 bits (126), Expect = 5e-09
Identities = 14/86 (16%), Positives = 23/86 (26%), Gaps = 3/86 (3%)
Query: 129 AIQCYRQAIEINNLD---YRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALG 185
A+ Y +AI + GLG T+ L PN +
Sbjct: 9 AVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYA 68
Query: 186 EAFEKQEKISEAMKCYNKSRAIGDAD 211
+ + ++ K A D
Sbjct: 69 MVLYNLGRYEQGVELLLKIIAETSDD 94
Score = 45.5 bits (108), Expect = 2e-06
Identities = 11/88 (12%), Positives = 24/88 (27%), Gaps = 3/88 (3%)
Query: 94 QAVLYFQRALKLN---PNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGL 150
QAV Y+++A+ + + LG + + A ++
Sbjct: 8 QAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFY 67
Query: 151 GQTYEILRLPYYGLYYYKQAHMVRPNDP 178
L G+ + +D
Sbjct: 68 AMVLYNLGRYEQGVELLLKIIAETSDDE 95
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A
{Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Length = 91
Score = 50.5 bits (122), Expect = 2e-08
Identities = 20/61 (32%), Positives = 37/61 (60%)
Query: 94 QAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQT 153
+A+ Y+Q+AL+L+PN W LG+ Y + + + AI+ Y++A+E++ + A LG
Sbjct: 27 EAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNA 86
Query: 154 Y 154
Sbjct: 87 K 87
Score = 41.2 bits (98), Expect = 2e-05
Identities = 27/88 (30%), Positives = 46/88 (52%), Gaps = 1/88 (1%)
Query: 105 LNP-NYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYG 163
++P N W LG+ Y + + + AI+ Y++A+E++ + AWY LG Y
Sbjct: 3 MDPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEA 62
Query: 164 LYYYKQAHMVRPNDPRMLTALGEAFEKQ 191
+ YY++A + PN+ LG A +KQ
Sbjct: 63 IEYYQKALELDPNNAEAKQNLGNAKQKQ 90
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR,
cell polarity, asymmetric CEL division, mitotic spindle
orientation; 2.60A {Homo sapiens}
Length = 406
Score = 54.6 bits (132), Expect = 2e-08
Identities = 31/163 (19%), Positives = 61/163 (37%), Gaps = 24/163 (14%)
Query: 94 QAVLYFQRALKL------NPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDY--- 144
AV+ ++ L + ++ LG+ Y+ + A + Y++ + +
Sbjct: 205 DAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRA 264
Query: 145 ---RAWYGLGQTYEILRLPYYGLYYYKQAHMV------RPNDPRMLTALGEAFEKQEKIS 195
++ Y LG TY +L+ + Y+ + + R + R +LG A+
Sbjct: 265 VEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHD 324
Query: 196 EAMKCYNKS----RAIGDADG--KALFKLAKLYDKLNETEAAA 232
+AM K R +GD G A L+ L L + +
Sbjct: 325 QAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYSTN 367
Score = 48.5 bits (116), Expect = 2e-06
Identities = 22/137 (16%), Positives = 46/137 (33%), Gaps = 16/137 (11%)
Query: 114 TLLGHEYMEMKNTNAAIQCYRQAIEINNLDYR----AWYGLGQTYEILRLPYYGLYYYKQ 169
L G + + A + + A+++ D + + LG Y L L Y+
Sbjct: 13 ALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHH 72
Query: 170 AHMV------RPNDPRMLTALGEAFEKQEKISEAMKCYNKS----RAIGD--ADGKALFK 217
+ + + + LG + EA+ C + R + D + +AL+
Sbjct: 73 DLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYN 132
Query: 218 LAKLYDKLNETEAAADL 234
L +Y ++
Sbjct: 133 LGNVYHAKGKSFGCPGP 149
Score = 42.3 bits (100), Expect = 2e-04
Identities = 28/186 (15%), Positives = 60/186 (32%), Gaps = 46/186 (24%)
Query: 94 QAVLYFQRALKLN----PNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEI-----NNLDY 144
V +F+ A+++ +++ LG+ Y + + A++ + + + + L
Sbjct: 27 AGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGE 86
Query: 145 -RAWYGLGQTYEILR-----LPYY-----------------------GLYYYKQAHMVRP 175
+A LG T ++L + G Y+ +
Sbjct: 87 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGK--SF 144
Query: 176 NDPRMLTALGEAFEKQEKISEAMKCYNKS----RAIGD--ADGKALFKLAKLYDKLNETE 229
P E ++ + A+ Y ++ A+GD A G+A L + L
Sbjct: 145 GCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFR 204
Query: 230 AAADLF 235
A
Sbjct: 205 DAVIAH 210
Score = 31.9 bits (73), Expect = 0.29
Identities = 10/59 (16%), Positives = 18/59 (30%), Gaps = 4/59 (6%)
Query: 181 LTALGEAFEKQEKISEAMKCYNKSRAIGDAD----GKALFKLAKLYDKLNETEAAADLF 235
L GE K + + + +G D +L Y L++ A +
Sbjct: 12 LALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYH 70
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein
structure initiative, no structural genomics consortium,
NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Length = 203
Score = 52.7 bits (127), Expect = 2e-08
Identities = 23/167 (13%), Positives = 46/167 (27%), Gaps = 25/167 (14%)
Query: 94 QAVLYFQRALKL-----NPNYLG-VWTLLGHEYMEMKNTNAAIQCYRQAIEI----NNLD 143
+A Y + +P +LG+ Y M + A ++ + +
Sbjct: 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHT 63
Query: 144 Y--RAWYGLGQTYEILRLPYYGLYYYKQAHMVR---PNDPRM----LTALGEAFEKQEKI 194
RA + +G + + + + P DP + +
Sbjct: 64 AEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDL 123
Query: 195 SEAMKCYNKS----RAIGDADG--KALFKLAKLYDKLNETEAAADLF 235
+ A + Y KS + D A L L + A +
Sbjct: 124 AGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHW 170
Score = 48.8 bits (117), Expect = 4e-07
Identities = 20/159 (12%), Positives = 52/159 (32%), Gaps = 25/159 (15%)
Query: 94 QAVLYFQRALKL---NPNYLGVWTL---LGHEYMEMKNTNAAIQCYRQAIEI-------N 140
+A FQ + + ++ +G N +AA +C+ + E+
Sbjct: 44 EARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDP 103
Query: 141 NLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMV------RPNDPRMLTALGEAFEKQEKI 194
Y + Y+++ + + LG+ ++++ +
Sbjct: 104 LAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNL 163
Query: 195 SEAMKCYNKSRAI----GDADGKA--LFKLAKLYDKLNE 227
EA + + ++R I D++ + +L L +
Sbjct: 164 LEAQQHWLRARDIFAELEDSEAVNELMTRLNGLEHHHHH 202
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte
oxidase factor, SH3 domain, repeat, TPR repeat cell
cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1
PDB: 1wm5_A 1e96_B*
Length = 213
Score = 51.6 bits (124), Expect = 6e-08
Identities = 18/126 (14%), Positives = 43/126 (34%), Gaps = 18/126 (14%)
Query: 94 QAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQT 153
+A F R++ + + + G Y + + + AI+ ++A+ + Y
Sbjct: 55 EAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYK---- 110
Query: 154 YEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGK 213
GL + A V N + + K+E+ +A + + ++
Sbjct: 111 -------ILGLQFKLFACEVLYN-------IAFMYAKKEEWKKAEEQLALATSMKSEPRH 156
Query: 214 ALFKLA 219
+ A
Sbjct: 157 SKIDKA 162
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha
subunit; ftase, farnesyltransferase, farnesyl
transferase, prenyltransferase, CAAX, RAS, lipid
modification, prenylation; HET: SUC FAR; 1.50A {Homo
sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A*
1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A*
2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A*
3ksq_A* 1o1t_A* 1o1s_A* ...
Length = 382
Score = 52.8 bits (126), Expect = 7e-08
Identities = 28/221 (12%), Positives = 63/221 (28%), Gaps = 5/221 (2%)
Query: 72 AEEAKSLLRSIAQKRQPDESSSQAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNT-NAAI 130
+++ + + Q DE S +A + A++LN VW ++ + +
Sbjct: 93 SDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEM 152
Query: 131 QCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEK 190
IE +Y+ W+ E LR P L + + ++
Sbjct: 153 NYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQE 212
Query: 191 QEKISEAMKCYNKSRAIGDADGKALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPD 250
+ ++ ++ + + + A L E L+ P
Sbjct: 213 FKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPH 272
Query: 251 KTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEA 291
+ K + L+ L + L + +
Sbjct: 273 NESAWNYLKGI----LQDRGLSKYPNLLNQLLDLQPSHSSP 309
Score = 45.8 bits (108), Expect = 1e-05
Identities = 14/103 (13%), Positives = 35/103 (33%), Gaps = 1/103 (0%)
Query: 102 ALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPY 161
+ + + V+ + + A + R AIE+N +Y W+ + L+
Sbjct: 89 QIIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDL 148
Query: 162 YG-LYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNK 203
+ + Y +P + ++ E S+ ++
Sbjct: 149 HEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIAD 191
Score = 45.1 bits (106), Expect = 2e-05
Identities = 17/169 (10%), Positives = 50/169 (29%), Gaps = 8/169 (4%)
Query: 41 AFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDESSSQAVLYFQ 100
+ Y + + A+K + ++ R + + Q D + + Y
Sbjct: 99 VYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLH--EEMNYIT 156
Query: 101 RALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLP 160
++ P VW +++ + ++ + + +Y AW + +L
Sbjct: 157 AIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLW 216
Query: 161 YYGLYYYKQAHMVRPNDP------RMLTALGEAFEKQEKISEAMKCYNK 203
L Y Q + + + + + + ++ +
Sbjct: 217 DNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLE 265
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell
division, protein binding; 1.10A {Mus musculus}
Length = 164
Score = 50.2 bits (121), Expect = 8e-08
Identities = 26/138 (18%), Positives = 54/138 (39%), Gaps = 22/138 (15%)
Query: 94 QAVLYFQRALKLNPNYLG------VWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDY--- 144
AV+ ++ L + + ++ LG+ Y+ + A + Y++ + +
Sbjct: 27 DAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRA 86
Query: 145 ---RAWYGLGQTYEILRLPYYGLYYYKQAHMV------RPNDPRMLTALGEAFEKQEKIS 195
++ Y LG TY +L+ + Y+ + + R + R +LG A+
Sbjct: 87 VEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHD 146
Query: 196 EAMKCYNKS----RAIGD 209
+AM K R +GD
Sbjct: 147 QAMHFAEKHLEISREVGD 164
Score = 42.9 bits (102), Expect = 3e-05
Identities = 25/138 (18%), Positives = 49/138 (35%), Gaps = 18/138 (13%)
Query: 116 LGHEYMEMKNTNAAIQCYRQAIEIN-NLDYR-----AWYGLGQTYEILRLPYYGLYYYKQ 169
LG+ + + N A+ + Q + I + A+ LG Y L YYK+
Sbjct: 15 LGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKK 74
Query: 170 AHMV------RPNDPRMLTALGEAFEKQEKISEAMKCYNKS----RAIGDADGKA--LFK 217
++ R + + +LG + + +A+ + K + + D G+ +
Sbjct: 75 TLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWS 134
Query: 218 LAKLYDKLNETEAAADLF 235
L Y L + A
Sbjct: 135 LGNAYTALGNHDQAMHFA 152
Score = 29.8 bits (68), Expect = 0.68
Identities = 11/61 (18%), Positives = 20/61 (32%), Gaps = 6/61 (9%)
Query: 181 LTALGEAFEKQEKISEAMKCYNKS----RAIGDADGKA--LFKLAKLYDKLNETEAAADL 234
LG +A+ + + + GD + L Y L E E A++
Sbjct: 12 FGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEY 71
Query: 235 F 235
+
Sbjct: 72 Y 72
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat,
protein-protein interaction, protein-binding, PR
binding; 2.30A {Mus musculus}
Length = 338
Score = 50.7 bits (122), Expect = 3e-07
Identities = 26/138 (18%), Positives = 53/138 (38%), Gaps = 22/138 (15%)
Query: 94 QAVLYFQRALKL------NPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDY--- 144
AV+ ++ L + ++ LG+ Y+ + A + Y++ + +
Sbjct: 201 DAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRA 260
Query: 145 ---RAWYGLGQTYEILRLPYYGLYYYKQAHMV------RPNDPRMLTALGEAFEKQEKIS 195
++ Y LG TY +L+ + Y+ + + R + R +LG A+
Sbjct: 261 VEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHD 320
Query: 196 EAMKCYNKS----RAIGD 209
+AM K R +GD
Sbjct: 321 QAMHFAEKHLEISREVGD 338
Score = 49.2 bits (118), Expect = 9e-07
Identities = 23/138 (16%), Positives = 46/138 (33%), Gaps = 16/138 (11%)
Query: 114 TLLGHEYMEMKNTNAAIQCYRQAIEINNLDYR----AWYGLGQTYEILRLPYYGLYYYKQ 169
L G + + A + + A+++ D + + LG Y L L Y+
Sbjct: 9 ALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHH 68
Query: 170 AHMV------RPNDPRMLTALGEAFEKQEKISEAMKCYNKS----RAIGDADGKA--LFK 217
+ + + + LG + EA+ C + R + D G+A L+
Sbjct: 69 DLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYN 128
Query: 218 LAKLYDKLNETEAAADLF 235
L +Y ++
Sbjct: 129 LGNVYHAKGKSFGCPGPQ 146
Score = 47.6 bits (114), Expect = 3e-06
Identities = 41/244 (16%), Positives = 81/244 (33%), Gaps = 51/244 (20%)
Query: 41 AFKYLANHHLKANNLDTAYKCAQKCLQ----HEETAEEAKSLLR-SIAQKRQPDESSSQA 95
+ L N + ++ A + L + EAK+ K + +A
Sbjct: 45 IYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGN--FDEA 102
Query: 96 VLYFQRALKLNP------------NYLG-VWTLLGHEYMEMKNTNA-------------A 129
++ QR L ++ LG V+ G + + A
Sbjct: 103 IVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAA 162
Query: 130 IQCYRQAIEI-----NNLDY-RAWYGLGQTYEILRLPYYGLYYYKQAHMV------RPND 177
+ Y + + + + RA+ LG T+ +L + ++Q ++ + +
Sbjct: 163 VDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAE 222
Query: 178 PRMLTALGEAFEKQEKISEAMKCYNKS----RAIGDADGKA--LFKLAKLYDKLNETEAA 231
R + LG A+ + A + Y K+ R + D +A + L Y L + E A
Sbjct: 223 RRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKA 282
Query: 232 ADLF 235
D
Sbjct: 283 IDYH 286
Score = 43.0 bits (102), Expect = 9e-05
Identities = 27/186 (14%), Positives = 59/186 (31%), Gaps = 46/186 (24%)
Query: 94 QAVLYFQRALKLN----PNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEI-----NNLDY 144
V +F+ A+++ +++ LG+ Y + + A++ + + + + L
Sbjct: 23 AGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGE 82
Query: 145 -RAWYGLGQTYEILR-----LPYY-----------------------GLYYYKQAHMVRP 175
+A LG T ++L + G Y+ +
Sbjct: 83 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGK--SF 140
Query: 176 NDPRMLTALGEAFEKQEKISEAMKCYNKS----RAIGD--ADGKALFKLAKLYDKLNETE 229
P + + + A+ Y ++ A+GD A G+A L + L
Sbjct: 141 GCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFR 200
Query: 230 AAADLF 235
A
Sbjct: 201 DAVIAH 206
Score = 31.4 bits (72), Expect = 0.36
Identities = 10/59 (16%), Positives = 18/59 (30%), Gaps = 4/59 (6%)
Query: 181 LTALGEAFEKQEKISEAMKCYNKSRAIGDAD----GKALFKLAKLYDKLNETEAAADLF 235
L GE K + + + +G D +L Y L++ A +
Sbjct: 8 LALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYH 66
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein,
tetratricopeptide repeat protein, HOST-virus
interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Length = 131
Score = 46.4 bits (111), Expect = 1e-06
Identities = 26/124 (20%), Positives = 47/124 (37%)
Query: 104 KLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYG 163
+ + G+E M+++N AA+ Y +AIE+N + + Y L
Sbjct: 6 EEDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGA 65
Query: 164 LYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKLAKLYD 223
+ ++A + P + +G A K EA+ Y K+ + + L
Sbjct: 66 VQDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAEL 125
Query: 224 KLNE 227
KL E
Sbjct: 126 KLRE 129
Score = 43.0 bits (102), Expect = 1e-05
Identities = 14/65 (21%), Positives = 28/65 (43%)
Query: 94 QAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQT 153
AV +RA+ ++P Y + +G + A+ Y++A+E++ + L
Sbjct: 64 GAVQDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIA 123
Query: 154 YEILR 158
LR
Sbjct: 124 ELKLR 128
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural
genomics, PSI-2, protein structure initiative; NMR
{Bacteroides fragilis}
Length = 99
Score = 45.4 bits (108), Expect = 1e-06
Identities = 17/89 (19%), Positives = 35/89 (39%), Gaps = 9/89 (10%)
Query: 116 LGHEYMEMKNTNAAIQCYRQAIEINNLDY-RAWYGLGQTYEILRLPYYGLYYYKQAHMVR 174
E + + A+Q + ++ + A+Y +G Y L L Y+ A +
Sbjct: 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65
Query: 175 PNDPRMLTALGEAFEKQEKISEAMKCYNK 203
P+ P A + ++ + + + YNK
Sbjct: 66 PDSP--------ALQARKMVMDILNFYNK 86
Score = 44.7 bits (106), Expect = 2e-06
Identities = 19/77 (24%), Positives = 33/77 (42%), Gaps = 4/77 (5%)
Query: 94 QAVLYFQRALKLNP-NYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQ 152
A+ + L+ P + L+G+ Y ++ + A+ Y+ AIE+N D A
Sbjct: 18 NALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNP-DSPALQARKM 76
Query: 153 TYEILRLPYYGLYYYKQ 169
+I L +Y Y Q
Sbjct: 77 VMDI--LNFYNKDMYNQ 91
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 48.9 bits (116), Expect = 2e-06
Identities = 33/201 (16%), Positives = 56/201 (27%), Gaps = 52/201 (25%)
Query: 67 QHEETAEEAKSLLR---SIAQKRQPDESSSQAVLYFQRALKLNPNYLGVWTLLGH---EY 120
+E A+ + + ++ +P + F + L L L Y
Sbjct: 50 ADDEPTTPAELVGKFLGYVSSLVEPSKVGQ-----FDQVLNL---------CLTEFENCY 95
Query: 121 MEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRM 180
+E + +A L L +T E+++ Y + RP D +
Sbjct: 96 LEGNDIHALAA---------KLLQENDTTLVKTKELIKN-----YITARIMAKRPFDKKS 141
Query: 181 LTALGEAFEKQEKISEAMKCYNKSRAI----GDADGKALFK-LAKLYDKLNETEAAADLF 235
+AL A + + AI G+ D F+ L LY DL
Sbjct: 142 NSALFRAVGEGNA-----QLV----AIFGGQGNTD--DYFEELRDLYQT--YHVLVGDLI 188
Query: 236 MEFVSKLDTFAAPPDKTCGFF 256
L F
Sbjct: 189 KFSAETLSELIRTTLDAEKVF 209
Score = 36.2 bits (83), Expect = 0.016
Identities = 29/189 (15%), Positives = 48/189 (25%), Gaps = 73/189 (38%)
Query: 226 NETEAAADL---FMEFVSKLDTFAAPPDKTCGF----------FAFKYLAN---HHL--- 266
+E A+L F+ +VS L P K F F YL H L
Sbjct: 52 DEPTTPAELVGKFLGYVSSL----VEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAK 107
Query: 267 ----------KANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQP------------ 304
K L Y A+ + + +L R++ +
Sbjct: 108 LLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTD 167
Query: 305 ---DE-----SSSQPM------ECAVVLDPVPPSTRSSKFPANPAYPF----------AT 340
+E + + A L + +T A + +
Sbjct: 168 DYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLD----AEKVFTQGLNILEWLENPS 223
Query: 341 SDPDDDAFS 349
+ PD D
Sbjct: 224 NTPDKDYLL 232
Score = 35.0 bits (80), Expect = 0.043
Identities = 25/124 (20%), Positives = 35/124 (28%), Gaps = 45/124 (36%)
Query: 10 NETEAAADL---FMEFVSKLDTFAAPPDKTCGF----------FAFKYLAN---HHL--- 50
+E A+L F+ +VS L P K F F YL H L
Sbjct: 52 DEPTTPAELVGKFLGYVSSL----VEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAK 107
Query: 51 ----------KANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDESSSQAVLY-- 98
K L Y A+ + + +L R++ A L
Sbjct: 108 LLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAV--------GEGNAQLVAI 159
Query: 99 F--Q 100
F Q
Sbjct: 160 FGGQ 163
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein
structure initiative, PSI, center for eukaryotic
structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Length = 307
Score = 46.0 bits (109), Expect = 8e-06
Identities = 38/233 (16%), Positives = 77/233 (33%), Gaps = 35/233 (15%)
Query: 93 SQAVLYFQRALKL--------NPNYLG---VWTLLGHEYMEMKNTNAAIQCYRQAIEI-- 139
S+A + +A K P+Y + + K A Y Q E
Sbjct: 8 SEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHA 67
Query: 140 NNLDY----RAWYGLGQTYEILRLPYYGLYYYKQAHMV--RPNDPRM----LTALGEAFE 189
NN +A+ G + L+ + Y ++A ++ P L G+ E
Sbjct: 68 NNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLME 127
Query: 190 KQEKISEAMKCYNKSRAIGDADGK------ALFKLAKLYDKLNETEAAADLFMEFVSKLD 243
+S+A+ Y ++ A+ + + + + K ++L + + + AA + S
Sbjct: 128 -PLDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYK 186
Query: 244 TFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHE--ETAEEAKSL 294
P + L + A KC ++ +E+ +L
Sbjct: 187 EMENYPTC---YKKCIAQVLVQLHRADYVAAQKCVRESYSIPGFSGSEDCAAL 236
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for
structu genomics, MCSG, tetratricopeptide repeat domain;
HET: PGE; 1.85A {Caenorhabditis elegans}
Length = 127
Score = 43.4 bits (103), Expect = 1e-05
Identities = 22/123 (17%), Positives = 48/123 (39%), Gaps = 8/123 (6%)
Query: 106 NPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLY 165
+ LG+ + K+ A Y +AIE++ + + Y + +
Sbjct: 4 MTDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQ 63
Query: 166 YYKQAHMVRPNDPRMLTA-------LGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKL 218
+ ++A V G AF+KQ +S A++ +++S + D + + K+
Sbjct: 64 FCEKAVEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSE-FRDPELVKKV 122
Query: 219 AKL 221
+L
Sbjct: 123 KEL 125
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain,
DNA-binding, transcription regulation, transmembrane;
1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Length = 372
Score = 44.7 bits (105), Expect = 3e-05
Identities = 13/141 (9%), Positives = 38/141 (26%), Gaps = 12/141 (8%)
Query: 78 LLRSIAQKRQPD-ESSSQAVLYFQRALKLNPNYLGVWTLLGHEY--------MEMKNTNA 128
++ D +S ++A ++ +P + ++ K A
Sbjct: 200 FYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAA 259
Query: 129 AIQCYRQAIEINNLDYRAWY--GLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGE 186
+ + L+ + + + + + + LG+
Sbjct: 260 LNTEIDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYV-LLGK 318
Query: 187 AFEKQEKISEAMKCYNKSRAI 207
+E + EA Y + +
Sbjct: 319 VYEMKGMNREAADAYLTAFNL 339
Score = 44.7 bits (105), Expect = 3e-05
Identities = 25/173 (14%), Positives = 58/173 (33%), Gaps = 12/173 (6%)
Query: 44 YLANHHLK---ANNLDTAYKCAQKCLQ-----HEETAEEAKSLLRSIAQKRQPDESSSQA 95
Y A+ +L +L+ A + + +Q AE+A + +Q ++ +
Sbjct: 201 YQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAAL 260
Query: 96 VLYFQRALKL--NPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQT 153
+ L N ++ + + T+ + Q I++ + + LG+
Sbjct: 261 NTEIDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEM-SWLNYVLLGKV 319
Query: 154 YEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQ-EKISEAMKCYNKSR 205
YE+ + Y A +RP + F+ + + + S
Sbjct: 320 YEMKGMNREAADAYLTAFNLRPGANTLYWIENGIFQTSVPYVVPYLDKFLASE 372
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics,
structural genomics conso SGC, microtubule, motor
protein, phosphoprotein; 2.70A {Homo sapiens} PDB:
3ceq_A
Length = 283
Score = 42.9 bits (102), Expect = 7e-05
Identities = 33/182 (18%), Positives = 48/182 (26%), Gaps = 49/182 (26%)
Query: 94 QAVLYFQRALKLNPNYLG------VWTL--LGHEYMEMKNTNAAIQCYRQAIEINNLDYR 145
+A +RAL++ LG L L YR+A+EI Y
Sbjct: 103 EAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEI----YA 158
Query: 146 AWYG------------LGQTYEILRLPYYGLY-----YYKQA-HMVR-----PNDPRMLT 182
G L Y G Y YK+ +
Sbjct: 159 TRLGPDDPNVAKTKNNLASCYLKQ-----GKYQDAETLYKEILTRAHEKEFGSVNGDNKP 213
Query: 183 A---LGEAFEKQEKISEAMKCYNKS---RAIGDAD---GKALFKLAKLYDKLNETEAAAD 233
E E ++K ++ +A L L LY + + EAA
Sbjct: 214 IWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHT 273
Query: 234 LF 235
L
Sbjct: 274 LE 275
Score = 37.5 bits (88), Expect = 0.005
Identities = 31/184 (16%), Positives = 53/184 (28%), Gaps = 51/184 (27%)
Query: 94 QAVLYFQRALKLNPNYLG------VWTL--LGHEYMEMKNTNAAIQCYRQAIEINNLDYR 145
+A AL + LG TL L Y + A ++A+EI
Sbjct: 61 EAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEI----RE 116
Query: 146 AWYG------------LGQTYEILRLPYYGLY-----YYKQAHMVR-----PNDPRMLTA 183
G L + G YY++A + P+DP +
Sbjct: 117 KVLGKFHPDVAKQLNNLALLCQNQ-----GKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171
Query: 184 ---LGEAFEKQEKISEAMKCYNKS------RAIGDADG---KALFKLAKLYDKLNETEAA 231
L + KQ K +A Y + + G +G + + ++ +
Sbjct: 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDS 231
Query: 232 ADLF 235
A
Sbjct: 232 APYG 235
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium
(SGC), motor PR transport protein; 2.80A {Homo sapiens}
Length = 311
Score = 42.9 bits (102), Expect = 8e-05
Identities = 32/182 (17%), Positives = 47/182 (25%), Gaps = 49/182 (26%)
Query: 94 QAVLYFQRALKLNPNYLG------VWTL--LGHEYMEMKNTNAAIQCYRQAIEINNLDYR 145
+A +RAL++ LG L L Y++A+EI Y+
Sbjct: 129 EAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEI----YQ 184
Query: 146 AWYG------------LGQTYEILRLPYYGLY-----YYKQA-HMVR-----PNDPRMLT 182
G L Y G + YK+ D
Sbjct: 185 TKLGPDDPNVAKTKNNLASCYLKQ-----GKFKQAETLYKEILTRAHEREFGSVDDENKP 239
Query: 183 A---LGEAFEKQEKISEAMKCYNKS---RAIGDAD---GKALFKLAKLYDKLNETEAAAD 233
E E + K + +A L L LY + + EAA
Sbjct: 240 IWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAET 299
Query: 234 LF 235
L
Sbjct: 300 LE 301
Score = 37.9 bits (89), Expect = 0.003
Identities = 21/137 (15%), Positives = 40/137 (29%), Gaps = 23/137 (16%)
Query: 94 QAVLYFQRALKLN--------PNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDY- 144
+ Y+QRAL++ PN L Y++ A Y++ + +
Sbjct: 171 EVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREF 230
Query: 145 --------RAWYGLGQTYEILRLPYYGLYYYKQAHMVR---PNDPRMLTA---LGEAFEK 190
W + E G + + + + P + T LG + +
Sbjct: 231 GSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRR 290
Query: 191 QEKISEAMKCYNKSRAI 207
Q K A +
Sbjct: 291 QGKFEAAETLEEAAMRS 307
Score = 31.4 bits (72), Expect = 0.39
Identities = 19/113 (16%), Positives = 32/113 (28%), Gaps = 26/113 (23%)
Query: 116 LGHEYMEMKNTNAAIQCYRQAIEI-------NNLDYRAWYG-LGQTYEILRLPYYGLY-- 165
L +Y A+ +QA+E ++ D L Y Y
Sbjct: 33 LVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQ-----NKYKD 87
Query: 166 ---YYKQAHMVR-----PNDPRMLTA---LGEAFEKQEKISEAMKCYNKSRAI 207
A +R + P + L + K+ K EA ++ I
Sbjct: 88 AANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEI 140
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast
structural genomics consortiu PSI-biology, protein
structure initiative, chaperone; NMR {Homo sapiens}
Length = 133
Score = 40.7 bits (96), Expect = 9e-05
Identities = 21/106 (19%), Positives = 41/106 (38%)
Query: 98 YFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEIL 157
+ +NP+ + G+E + + A++ Y +AI+ N D + + Y L
Sbjct: 4 HHHHHSHMNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKL 63
Query: 158 RLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNK 203
L ++ + P + T A E + ++AM Y K
Sbjct: 64 LEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQK 109
Score = 33.4 bits (77), Expect = 0.032
Identities = 9/47 (19%), Positives = 24/47 (51%)
Query: 94 QAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEIN 140
A+ + ++L P ++ +T MK+ A+ Y++A++++
Sbjct: 68 LALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLD 114
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical
repeat, protein binding, chaperone; 1.90A {Homo sapiens}
SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Length = 131
Score = 40.8 bits (96), Expect = 1e-04
Identities = 27/136 (19%), Positives = 49/136 (36%), Gaps = 28/136 (20%)
Query: 94 QAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQT 153
A+ ++ +A +L+P + T Y E + N + +AIE+ + + + +
Sbjct: 22 TALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKA 81
Query: 154 YEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGK 213
Y +G ++ K+EK +A+ YNKS A
Sbjct: 82 Y---------------------------ARIGNSYFKEEKYKDAIHFYNKSLAE-HRTPD 113
Query: 214 ALFKLAKLYDKLNETE 229
L K + L E E
Sbjct: 114 VLKKCQQAEKILKEQE 129
Score = 28.8 bits (65), Expect = 1.2
Identities = 18/112 (16%), Positives = 40/112 (35%), Gaps = 2/112 (1%)
Query: 183 ALGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKLAKLYDKLNETEAAADLFMEFVSKL 242
LG K++ A+K Y+K++ + + + A +Y + + +L + + ++
Sbjct: 9 ELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAI-EV 67
Query: 243 DTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSL 294
+ A+ + N + K A K L T + K
Sbjct: 68 GRENREDYRQIA-KAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTPDVLKKC 118
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3
ligase, ubiquitinylation, TPR, heat-shock protein
complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Length = 281
Score = 42.2 bits (99), Expect = 1e-04
Identities = 21/137 (15%), Positives = 50/137 (36%), Gaps = 1/137 (0%)
Query: 93 SQAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQ 152
+A + RA+ NP +T Y++M+ A+ R+A+E++ +A + LGQ
Sbjct: 21 PEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 80
Query: 153 TYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADG 212
+ + ++A+ + + + K + R +++
Sbjct: 81 CQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRWNS-IEERRIHQESEL 139
Query: 213 KALFKLAKLYDKLNETE 229
+ ++ E E
Sbjct: 140 HSYLTRLIAAERERELE 156
Score = 41.1 bits (96), Expect = 3e-04
Identities = 19/197 (9%), Positives = 55/197 (27%)
Query: 117 GHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPN 176
G+ + A CY +AI N L + Y ++ P L ++A +
Sbjct: 11 GNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ 70
Query: 177 DPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKLAKLYDKLNETEAAADLFM 236
+ LG+ + E EA+ ++ ++ ++ + + +
Sbjct: 71 SVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRWNSIEE 130
Query: 237 EFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLR 296
+ + + + + L + + E ++ + +
Sbjct: 131 RRIHQESELHSYLTRLIAAERERELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMD 190
Query: 297 SIAQKRQPDESSSQPME 313
+ + +
Sbjct: 191 ELFSQVDEKRKKRDIPD 207
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio
parahaemolyticus RIMD 22 structural genomics, PSI-2,
protein structure initiative; HET: MES; 2.14A {Vibrio
parahaemolyticus}
Length = 176
Score = 40.7 bits (95), Expect = 2e-04
Identities = 12/125 (9%), Positives = 32/125 (25%)
Query: 117 GHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPN 176
E ++ A+ + + + + +
Sbjct: 13 VSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQD 72
Query: 177 DPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKLAKLYDKLNETEAAADLFM 236
+ +Q S +K + A + + +LA Y+++ E A +L
Sbjct: 73 NSYKSLIAKLELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLW 132
Query: 237 EFVSK 241
+
Sbjct: 133 NILKV 137
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1,
SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Length = 164
Score = 39.7 bits (93), Expect = 4e-04
Identities = 23/119 (19%), Positives = 34/119 (28%), Gaps = 2/119 (1%)
Query: 117 GHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPN 176
G+ M K + AI Y QA+ I + Y + A +V P
Sbjct: 18 GNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPK 77
Query: 177 DPRMLTALGEAFEKQEKISEAMKCYNKSRAI--GDADGKALFKLAKLYDKLNETEAAAD 233
+ + LG A A + Y K L K+ E A+
Sbjct: 78 YSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLETTKRKIEEANRGAE 136
Score = 34.3 bits (79), Expect = 0.026
Identities = 12/47 (25%), Positives = 21/47 (44%)
Query: 94 QAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEIN 140
+A + A ++P Y W+ LG +M + A + Y + IE
Sbjct: 63 KAAEDAELATVVDPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAE 109
Score = 33.9 bits (78), Expect = 0.028
Identities = 22/131 (16%), Positives = 39/131 (29%), Gaps = 3/131 (2%)
Query: 94 QAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQT 153
+A+ + +AL + P + Y A + A ++ +AW LG
Sbjct: 29 KAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLA 88
Query: 154 YEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEK-QEKISEAMKCYNKSRAIGDADG 212
+ Y++ N A+ E + KI EA + D
Sbjct: 89 RFDMADYKGAKEAYEKGIEAEGNGGS--DAMKRGLETTKRKIEEANRGAEPPADDVDDAA 146
Query: 213 KALFKLAKLYD 223
A + D
Sbjct: 147 GASRGAGGMPD 157
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein
interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP:
a.118.8.1 PDB: 2bug_A
Length = 166
Score = 38.5 bits (90), Expect = 9e-04
Identities = 18/105 (17%), Positives = 42/105 (40%)
Query: 93 SQAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQ 152
A+ ++ +A++LNP+ + Y+ + A+ +AIE++ + +Y
Sbjct: 30 ENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAA 89
Query: 153 TYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEA 197
+ L L Y+ V+P+D E + ++ +
Sbjct: 90 SNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFE 134
Score = 37.7 bits (88), Expect = 0.002
Identities = 23/119 (19%), Positives = 40/119 (33%), Gaps = 2/119 (1%)
Query: 117 GHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPN 176
++Y + K+ AI+ Y QAIE+N + + Y Y L +A +
Sbjct: 20 ANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK 79
Query: 177 DPRMLTALGEAFEKQEKISEAMKCYNKSRAI--GDADGKALFKLAKLYDKLNETEAAAD 233
+ + K A++ Y + D D K ++ K E A
Sbjct: 80 YIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIA 138
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and
HSP90, C-terminal PA HSP70, peptide binding protein;
1.60A {Saccharomyces cerevisiae}
Length = 126
Score = 36.9 bits (86), Expect = 0.002
Identities = 20/113 (17%), Positives = 42/113 (37%), Gaps = 2/113 (1%)
Query: 117 GHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPN 176
G EY + A++ Y + I+ D R + L + +A PN
Sbjct: 11 GKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN 70
Query: 177 DPRMLTALGEAFEKQEKISEAMKCYNKSRAI--GDADGKALFKLAKLYDKLNE 227
R A ++ + A++ + +R +G + ++ +LY K ++
Sbjct: 71 FVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQ 123
Score = 31.9 bits (73), Expect = 0.097
Identities = 6/40 (15%), Positives = 19/40 (47%)
Query: 101 RALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEIN 140
+A++ +PN++ + + +K +A++ A +
Sbjct: 63 KAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKD 102
Score = 31.5 bits (72), Expect = 0.15
Identities = 16/105 (15%), Positives = 32/105 (30%), Gaps = 1/105 (0%)
Query: 94 QAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQT 153
AV + +K P ++ ++ + AI +AIE + RA+
Sbjct: 22 NAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATA 81
Query: 154 YEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAM 198
++ L A ++ E + K S+
Sbjct: 82 QIAVKEYASALETLDAARTKDAE-VNNGSSAREIDQLYYKASQQR 125
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like
repeat, protein transport; 2.90A {Saccharomyces
cerevisiae} SCOP: a.118.8.1
Length = 292
Score = 38.5 bits (89), Expect = 0.002
Identities = 32/200 (16%), Positives = 52/200 (26%), Gaps = 26/200 (13%)
Query: 73 EEAKSLLRSIAQKRQPDESSSQAVLYFQRALKLNPNYL------GVWTLLGHEYMEMKNT 126
EEA L A + + + A F +A + + N+
Sbjct: 34 EEAADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNS 93
Query: 127 NAAIQCYRQAIEINNLDYR------AWYGLGQTYEI-LRLPYYGLYYYKQAHMVRPNDPR 179
A+ AI+I + + LG+ E L + Y+ A D
Sbjct: 94 VNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQS 153
Query: 180 ------MLTALGEAFEKQEKISEAMKCYNKSRAIGDADG-------KALFKLAKLYDKLN 226
+ + EA Y+K + K
Sbjct: 154 VALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAAT 213
Query: 227 ETEAAADLFMEFVSKLDTFA 246
+ AAA E S+ FA
Sbjct: 214 DAVAAARTLQEGQSEDPNFA 233
Score = 32.3 bits (73), Expect = 0.21
Identities = 21/177 (11%), Positives = 42/177 (23%), Gaps = 38/177 (21%)
Query: 116 LGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRP 175
Y K N A + +A + + Y +A
Sbjct: 43 AATIYRLRKELNLAGDSFLKAADY--------------QKKAGNEDEAGNTYVEA----- 83
Query: 176 NDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADG------KALFKLAKLYDK-LNET 228
+ F+ A+ + I G F+L ++ + L++
Sbjct: 84 ---------YKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDY 134
Query: 229 EAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHE 285
A D + + +A F A+ A K ++
Sbjct: 135 AKAIDCYEL---AGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSS 188
Score = 30.4 bits (68), Expect = 0.72
Identities = 32/228 (14%), Positives = 64/228 (28%), Gaps = 37/228 (16%)
Query: 41 AFKYLANHHLKANNLD---TAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDESSSQAVL 97
+F A++ KA N D Y A KC + + A L + Q +
Sbjct: 59 SFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGAN 118
Query: 98 YFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLD------YRAWYGLG 151
+ ++ ++ + AI CY A E D + +
Sbjct: 119 FKFELGEIL-------------ENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCA 165
Query: 152 QTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEK-------QEKISEAMKCYNKS 204
+ Y + + +L + F K A + +
Sbjct: 166 DLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEG 225
Query: 205 RAIGDA-----DGKALFKLAKLYDKLNETEAAADLFMEF--VSKLDTF 245
++ + L L ++ + E ++ EF +LD +
Sbjct: 226 QSEDPNFADSRESNFLKSLIDAVNEGDS-EQLSEHCKEFDNFMRLDKW 272
Score = 28.4 bits (63), Expect = 2.9
Identities = 14/131 (10%), Positives = 37/131 (28%), Gaps = 13/131 (9%)
Query: 180 MLTALGEAFEKQEKISEAMKCYNKSRAI------GDADGKALFKLAKLYDKLNETEAAAD 233
+ + +++++ A + K+ D G + K + + A D
Sbjct: 39 LCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVD 98
Query: 234 LFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLK-ANNLDTA---YKCAQKCLQHEETAE 289
E ++ T + L ++ A Y+ A + +++
Sbjct: 99 SL-ENAIQIFTHRGQFRRGAN--FKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVA 155
Query: 290 EAKSLLRSIAQ 300
+ A
Sbjct: 156 LSNKCFIKCAD 166
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens}
SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Length = 336
Score = 37.6 bits (87), Expect = 0.004
Identities = 23/127 (18%), Positives = 45/127 (35%), Gaps = 20/127 (15%)
Query: 117 GHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPN 176
G Y + A+ Y++ + + Q + LRL + N
Sbjct: 154 GTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHL------------N 201
Query: 177 DPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKLAKLYDKLNETEAAADLFM 236
+ L K + S A++ NK+ + + K L + + + +N+ E A F
Sbjct: 202 --LAMCHL-----KLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQ 254
Query: 237 EFVSKLD 243
+ V +L
Sbjct: 255 K-VLQLY 260
Score = 32.2 bits (73), Expect = 0.22
Identities = 20/159 (12%), Positives = 52/159 (32%), Gaps = 22/159 (13%)
Query: 41 AFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDESSSQAVLYFQ 100
K + K A +K + + + +Q +
Sbjct: 149 IVKERGTVYFKEGKYKQALLQYKKIVSW-------------LEYESSFSNEEAQKAQALR 195
Query: 101 RALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLP 160
A LN L +++++ +AAI+ +A+E+++ + + G+ + +
Sbjct: 196 LASHLN---------LAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDF 246
Query: 161 YYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMK 199
+++ + PN+ T L ++ + K
Sbjct: 247 ELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREK 285
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR,
tetratricopeptide repeat like, TPR-like, transport
protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Length = 158
Score = 36.3 bits (83), Expect = 0.005
Identities = 22/127 (17%), Positives = 42/127 (33%), Gaps = 21/127 (16%)
Query: 94 QAVLYFQRALKLNPNYLGVWTLLGHEYMEM----------KNTNAAIQCYRQAIEINNLD 143
Q + K NP T G +E+ + AI + +A+ I+
Sbjct: 20 QIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKK 79
Query: 144 YRAWYGLGQTYEILRLPYYG-----------LYYYKQAHMVRPNDPRMLTALGEAFEKQE 192
A + +G Y +++QA +P++ L +L + +
Sbjct: 80 DEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTAKAPQ 139
Query: 193 KISEAMK 199
+EA K
Sbjct: 140 LHAEAYK 146
Score = 31.7 bits (71), Expect = 0.16
Identities = 13/73 (17%), Positives = 26/73 (35%), Gaps = 11/73 (15%)
Query: 79 LRSIAQKRQPDESSSQAVLYFQRALKLNPNYLGVWTLLGHEYMEM-----------KNTN 127
L + +A+ F+ AL ++P +G+ Y N +
Sbjct: 49 LSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFD 108
Query: 128 AAIQCYRQAIEIN 140
A Q ++QA++
Sbjct: 109 LATQFFQQAVDEQ 121
Score = 31.7 bits (71), Expect = 0.17
Identities = 11/102 (10%), Positives = 29/102 (28%), Gaps = 21/102 (20%)
Query: 127 NAAIQCYRQAIEINNLDYRAWYGLGQTY----------EILRLPYYGLYYYKQAHMVRPN 176
Q + N LD G + ++ + +++A ++ P
Sbjct: 19 EQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK 78
Query: 177 DPRMLTALGEAF-----------EKQEKISEAMKCYNKSRAI 207
+ +G A+ E + A + + ++
Sbjct: 79 KDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE 120
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical
repeat, HSP70, protein binding, chaperone; 1.60A {Homo
sapiens} SCOP: a.118.8.1
Length = 118
Score = 34.9 bits (81), Expect = 0.009
Identities = 15/87 (17%), Positives = 37/87 (42%)
Query: 117 GHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPN 176
G++ + + N + A+QCY +AI+++ ++ + Y + ++P+
Sbjct: 11 GNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD 70
Query: 177 DPRMLTALGEAFEKQEKISEAMKCYNK 203
+ + A E + EA + Y +
Sbjct: 71 WGKGYSRKAAALEFLNRFEEAKRTYEE 97
Score = 33.7 bits (78), Expect = 0.023
Identities = 13/97 (13%), Positives = 36/97 (37%)
Query: 94 QAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQT 153
A+ + A+KL+P+ +++ Y + + A + + +++ + +
Sbjct: 22 DALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAA 81
Query: 154 YEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEK 190
E L Y++ N+P++ L +
Sbjct: 82 LEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNMEAR 118
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A
{Encephalitozoon cuniculi} PDB: 2uy1_B
Length = 493
Score = 36.8 bits (84), Expect = 0.010
Identities = 25/257 (9%), Positives = 61/257 (23%), Gaps = 20/257 (7%)
Query: 39 FFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLL--RSIAQKRQPDESSSQAV 96
K + + + Y+ Q ++ A+ + K S+
Sbjct: 140 ITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMH 199
Query: 97 LYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINN-----LDYRAWYGLG 151
L V+ + + A + + IE+++ L Y
Sbjct: 200 FIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEMSDGMFLSLYYGLVMDEE 259
Query: 152 QTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDAD 211
Y L+ Y + + K+ + K + +
Sbjct: 260 AVYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLF--IELGNEGV 317
Query: 212 GKALFKLAKL--YDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKAN 269
G +F Y ++F + K ++ L+
Sbjct: 318 GPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTL--------LKEEF-FLFLLRIG 368
Query: 270 NLDTAYKCAQKCLQHEE 286
+ + A ++ +
Sbjct: 369 DEENARALFKRLEKTSR 385
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat,
cysteine rich protein, loop-helix-TU repeat protein,
hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Length = 273
Score = 36.0 bits (84), Expect = 0.010
Identities = 21/123 (17%), Positives = 43/123 (34%), Gaps = 26/123 (21%)
Query: 116 LGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYG----------LY 165
LG + + K+ A + + +A ++ + LG Y Y G
Sbjct: 12 LGAKSYKEKDFTQAKKYFEKACDLKENS--GCFNLGVLY------YQGQGVEKNLKKAAS 63
Query: 166 YYKQAHMVRPNDPRMLTALGEAFEK----QEKISEAMKCYNKSRAIGDADGKALFKLAKL 221
+Y +A N LG + + ++A++ Y+K+ + A+ L +
Sbjct: 64 FYAKA--CDLNYSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKYAE--GCASLGGI 119
Query: 222 YDK 224
Y
Sbjct: 120 YHD 122
Score = 31.0 bits (71), Expect = 0.48
Identities = 13/49 (26%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
Query: 176 NDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKLAKLYDK 224
DP+ L LG K++ ++A K + K+ + + F L LY +
Sbjct: 4 QDPKELVGLGAKSYKEKDFTQAKKYFEKACDLKENS--GCFNLGVLYYQ 50
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for
structu genomics, MCSG, tetratricopeptide repeat domain;
1.60A {Caenorhabditis elegans}
Length = 126
Score = 34.5 bits (80), Expect = 0.013
Identities = 14/103 (13%), Positives = 31/103 (30%)
Query: 101 RALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLP 160
R +NP G+EY + + A++ Y +A++ + + + L
Sbjct: 4 RLAYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEF 63
Query: 161 YYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNK 203
L + + + S+A + Y
Sbjct: 64 QRALDDCDTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYED 106
Score = 32.2 bits (74), Expect = 0.082
Identities = 7/48 (14%), Positives = 22/48 (45%), Gaps = 2/48 (4%)
Query: 100 QRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEI--NNLDYR 145
++L+ ++ + + M+ + A + Y A+++ +N + R
Sbjct: 71 DTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAR 118
Score = 31.8 bits (73), Expect = 0.097
Identities = 11/95 (11%), Positives = 32/95 (33%)
Query: 93 SQAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQ 152
A+ ++ A+K +P +++ ++ A+ I +++ + +
Sbjct: 30 PTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAA 89
Query: 153 TYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEA 187
+R Y+ A V P++ +
Sbjct: 90 CLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNC 124
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens}
SCOP: a.118.8.1
Length = 152
Score = 34.8 bits (80), Expect = 0.015
Identities = 14/46 (30%), Positives = 21/46 (45%)
Query: 44 YLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPD 89
YLA + + + A K + LQ E +AK L R I + + D
Sbjct: 76 YLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDKAMKKD 121
Score = 34.8 bits (80), Expect = 0.015
Identities = 14/46 (30%), Positives = 21/46 (45%)
Query: 260 YLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPD 305
YLA + + + A K + LQ E +AK L R I + + D
Sbjct: 76 YLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDKAMKKD 121
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR,
scaffold, peroxisome, membrane fission, protein binding;
1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A
3uux_A
Length = 134
Score = 34.5 bits (79), Expect = 0.016
Identities = 14/57 (24%), Positives = 22/57 (38%), Gaps = 5/57 (8%)
Query: 44 YLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDESSSQAVLYFQ 100
YL K A + +HE ++ +L + K Q +E+ LYFQ
Sbjct: 83 YLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKSMVEDKIQKEEN-----LYFQ 134
Score = 32.9 bits (75), Expect = 0.047
Identities = 10/48 (20%), Positives = 18/48 (37%)
Query: 260 YLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDES 307
YL K A + +HE ++ +L + K Q +E+
Sbjct: 83 YLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKSMVEDKIQKEEN 130
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein
interactions, TPR, super-helix,; 2.9A {Homo sapiens}
SCOP: a.118.8.1 d.159.1.3
Length = 477
Score = 35.8 bits (83), Expect = 0.020
Identities = 21/118 (17%), Positives = 44/118 (37%), Gaps = 3/118 (2%)
Query: 41 AFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDESSSQAVLYFQ 100
K AN + KA + + A K + + E + + E A+
Sbjct: 8 ELKTQANDYFKAKDYENAIKFYSQAI---ELNPSNAIYYGNRSLAYLRTECYGYALGDAT 64
Query: 101 RALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILR 158
RA++L+ Y+ + M + AA++ Y +++ D A + +I++
Sbjct: 65 RAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVK 122
Score = 32.3 bits (74), Expect = 0.24
Identities = 17/86 (19%), Positives = 37/86 (43%)
Query: 93 SQAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQ 152
A+ ++ +A++LNP+ + Y+ + A+ +AIE++ + +Y
Sbjct: 23 ENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAA 82
Query: 153 TYEILRLPYYGLYYYKQAHMVRPNDP 178
+ L L Y+ V+P+D
Sbjct: 83 SNMALGKFRAALRDYETVVKVKPHDK 108
Score = 32.0 bits (73), Expect = 0.28
Identities = 20/105 (19%), Positives = 36/105 (34%)
Query: 117 GHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPN 176
++Y + K+ AI+ Y QAIE+N + + Y Y L +A +
Sbjct: 13 ANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK 72
Query: 177 DPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKLAKL 221
+ + K A++ Y + D A K +
Sbjct: 73 YIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQEC 117
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase,
ligase-chaperone complex; 1.54A {Mus musculus} PDB:
3q47_B 3q4a_B*
Length = 137
Score = 33.8 bits (78), Expect = 0.023
Identities = 22/111 (19%), Positives = 47/111 (42%), Gaps = 5/111 (4%)
Query: 94 QAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQT 153
+A + RA+ NP +T Y++M+ A+ R+A+E++ +A + LGQ
Sbjct: 27 EAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 86
Query: 154 YEILRLPYYGLYYYKQAHMVRPNDP-----RMLTALGEAFEKQEKISEAMK 199
+ + ++A+ + + +AL A +K+ E +
Sbjct: 87 QLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRWNSIEERR 137
Score = 33.1 bits (76), Expect = 0.049
Identities = 17/115 (14%), Positives = 38/115 (33%)
Query: 117 GHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPN 176
G+ + A CY +AI N L + Y ++ P L ++A +
Sbjct: 16 GNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ 75
Query: 177 DPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKLAKLYDKLNETEAA 231
+ LG+ + E EA+ ++ ++ ++ + +
Sbjct: 76 SVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRW 130
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide
repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo
sapiens} SCOP: a.118.8.1
Length = 497
Score = 35.3 bits (80), Expect = 0.024
Identities = 30/208 (14%), Positives = 56/208 (26%), Gaps = 5/208 (2%)
Query: 116 LGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRP 175
LG T+ A YR A ++ + + + L ++YY ++ V+
Sbjct: 158 LGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKF 217
Query: 176 NDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKLAKLYDKLNETEAAADLF 235
P T L +A K + + +K A K + + L
Sbjct: 218 PFPAASTNLQKALSKALESRDEVKTKWGVSDFIKAFIKFHGHVYLSKSLEKLSPLREKLE 277
Query: 236 MEFVSKLDTFAAPPDK-----TCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEE 290
+F L A + F +L + + + Q
Sbjct: 278 EQFKELLFQKAFNSQQLVHVTVINLFQLHHLRDFSNETEQHTYSQDEQLCWTQLLALFMS 337
Query: 291 AKSLLRSIAQKRQPDESSSQPMECAVVL 318
+L + + E S V
Sbjct: 338 FLGILCKCPLQNESQEESYNAYPLPAVK 365
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase;
1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Length = 370
Score = 35.1 bits (81), Expect = 0.029
Identities = 29/157 (18%), Positives = 60/157 (38%), Gaps = 21/157 (13%)
Query: 43 KYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDESSSQAVLYFQRA 102
K + N K+ N + A K K L++ E + +++ + +
Sbjct: 227 KNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRA------------AAEDADGAKLQPVALS 274
Query: 103 LKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYY 162
LN +G ++M + A+ +A+EI+ + +A Y Q ++ L+
Sbjct: 275 CVLN---------IGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQ 325
Query: 163 GLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMK 199
L K+A + P D + L + +K + + K
Sbjct: 326 ALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEK 362
Score = 27.4 bits (61), Expect = 7.6
Identities = 13/46 (28%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Query: 190 KQEKISEAMKCYNKSRAIGDADGKALFKLAKLYDKLNETEAA-ADL 234
K A+ ++ I ++ KAL++ A+ + L E + A ADL
Sbjct: 285 KMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADL 330
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces
cerevisiae} SCOP: a.118.8.1
Length = 144
Score = 33.7 bits (77), Expect = 0.032
Identities = 9/46 (19%), Positives = 16/46 (34%)
Query: 44 YLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPD 89
YL K A + +HE ++ +L + K Q +
Sbjct: 82 YLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKSMVEDKIQKE 127
Score = 33.7 bits (77), Expect = 0.032
Identities = 9/46 (19%), Positives = 16/46 (34%)
Query: 260 YLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPD 305
YL K A + +HE ++ +L + K Q +
Sbjct: 82 YLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKSMVEDKIQKE 127
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus
thuringiensis serovar ISRAELE35646}
Length = 293
Score = 34.4 bits (78), Expect = 0.040
Identities = 24/173 (13%), Positives = 50/173 (28%), Gaps = 11/173 (6%)
Query: 43 KYLANHHLKANNLDTAYKCAQKCLQHEETAEEAK---SLLRSIAQKRQPDESSSQAVLYF 99
Y+A + LK + + +K L + T + + +IA + + + F
Sbjct: 119 YYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLF 178
Query: 100 QRALKLNPNY-------LGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQ 152
++ LK + V ++ +AIEI+ + +GQ
Sbjct: 179 EQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISC-RINSMALIGQ 237
Query: 153 TYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSR 205
Y L Y + + E +E + +
Sbjct: 238 LYYQRGECLRKLEYEEAEIEDAYKKASFFFDILEMHAYKEALVNKISRLEHHH 290
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein
superhelix, transc activator; 1.45A {Escherichia coli}
SCOP: a.118.8.2
Length = 373
Score = 34.2 bits (78), Expect = 0.054
Identities = 20/217 (9%), Positives = 50/217 (23%), Gaps = 26/217 (11%)
Query: 94 QAVLYFQRALKLNPNYLGVWT-----LLGHEYMEMKNTNAAIQCYRQAIEI----NNLDY 144
+A + AL+ P +LG ++ +Q ++ + Y
Sbjct: 32 EAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHY 91
Query: 145 RAW--YGLGQTYEILRLPYYGLYYYKQAHMVR--------PNDPRMLTALGEAFEKQEKI 194
W + ++A + P ++ + ++
Sbjct: 92 ALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARL 151
Query: 195 SEAMKCYNKSRAIGDADG-----KALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPP 249
EA + + + L L + + + A + L
Sbjct: 152 DEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHS 211
Query: 250 DKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEE 286
D + + A + + E
Sbjct: 212 DWISNANK--VRVIYWQMTGDKAAAANWLRHTAKPEF 246
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C,
TPR-containing domain, structural genomics; 1.63A
{Plasmodium falciparum} SCOP: a.118.8.1
Length = 198
Score = 33.2 bits (76), Expect = 0.077
Identities = 26/159 (16%), Positives = 49/159 (30%), Gaps = 21/159 (13%)
Query: 41 AFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDESSSQAVLYFQ 100
K N K N ++ A ++ L EE D+ +
Sbjct: 40 DIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEE------------WDDQILLDKKKNIE 87
Query: 101 RALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLP 160
+ LN L Y + K+ AI + ++I+ + +A Y LG
Sbjct: 88 ISCNLN---------LATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFL 138
Query: 161 YYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMK 199
+A + PN+ + + K ++ + K
Sbjct: 139 EEAKENLYKAASLNPNNLDIRNSYELCVNKLKEARKKDK 177
Score = 28.6 bits (64), Expect = 2.2
Identities = 21/128 (16%), Positives = 42/128 (32%), Gaps = 21/128 (16%)
Query: 117 GHEYMEMKNTNAAIQCYRQAIE-INNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRP 175
G+E+ + N AI Y++A++ + + L + + +
Sbjct: 45 GNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNL------------ 92
Query: 176 NDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKLAKLYDKLNETEAAADLF 235
N K + +A+ +K I + KAL+KL E A +
Sbjct: 93 N--LATCYN-----KNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENL 145
Query: 236 MEFVSKLD 243
+ L+
Sbjct: 146 -YKAASLN 152
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat,
CLP1, PCF11, structural protein; 2.30A {Kluyveromyces
lactis} PDB: 4e85_A 4eba_A
Length = 679
Score = 33.9 bits (76), Expect = 0.090
Identities = 6/82 (7%), Positives = 24/82 (29%)
Query: 67 QHEETAEEAKSLLRSIAQKRQPDESSSQAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNT 126
+ + + + + S + ++ P + ++ L ++ +K
Sbjct: 23 SMTGGQQMGRGSMSTSLRPTSRVRDESDVIGKLNDMIEEQPTDIFLYVKLLKHHVSLKQW 82
Query: 127 NAAIQCYRQAIEINNLDYRAWY 148
+ + + + L W
Sbjct: 83 KQVYETFDKLHDRFPLMANIWC 104
Score = 33.9 bits (76), Expect = 0.093
Identities = 26/216 (12%), Positives = 62/216 (28%), Gaps = 23/216 (10%)
Query: 87 QPDESSSQAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRA 146
+ + S+ Y + + PN + L +Y I+ +LD A
Sbjct: 355 EKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAA 414
Query: 147 WYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRA 206
T E + ++ + ++ + ++ + K + K R
Sbjct: 415 LMEDDPTNESAI------------NQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRR 462
Query: 207 IGDADGKALFKLAKL--YDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANH 264
+ ++ Y +T+ A + L FA + + KYL +
Sbjct: 463 LKKLVTPDIYLENAYIEYHISKDTKTACKVLELG---LKYFATDGE-----YINKYL-DF 513
Query: 265 HLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQ 300
+ N + + + K + + +
Sbjct: 514 LIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIF 549
Score = 29.6 bits (65), Expect = 2.0
Identities = 25/190 (13%), Positives = 47/190 (24%), Gaps = 1/190 (0%)
Query: 37 CGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDESSSQAV 96
+ L Y A+ Q + I + + + +
Sbjct: 236 TQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPN 295
Query: 97 LYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYE- 155
Y + L + ++ + E + + Y QA + W+ +
Sbjct: 296 EYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHVCFAPEIWFNMANYQGE 355
Query: 156 ILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKAL 215
Y K PN + +L E +E KI E D AL
Sbjct: 356 KNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAAL 415
Query: 216 FKLAKLYDKL 225
+ +
Sbjct: 416 MEDDPTNESA 425
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown
function, SEL1-like repeats; 1.68A {Escherichia coli}
Length = 490
Score = 33.4 bits (77), Expect = 0.094
Identities = 29/149 (19%), Positives = 53/149 (35%), Gaps = 32/149 (21%)
Query: 94 QAVLYFQRALKLNPNYLGVWTLLGHEYME----MKNTNAAIQCYRQAIEINNLDYRAWYG 149
A ++ +A + + LG+ Y +N + Q YR++ +
Sbjct: 169 MAREWYSKAAEQG--NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSGDEL--GQLH 224
Query: 150 LGQTYEILRLPYYG----------LYYYKQAHMVRPNDPRMLTALGEAFEK----QEKIS 195
L Y Y+G + Q+ + LG E+ ++
Sbjct: 225 LADMY------YFGIGVTQDYTQSRVLFSQS--AEQGNSIAQFRLGYILEQGLAGAKEPL 276
Query: 196 EAMKCYNKSRAIGDADGKALFKLAKLYDK 224
+A++ Y KS G++D + LA LYDK
Sbjct: 277 KALEWYRKSAEQGNSD--GQYYLAHLYDK 303
>2l6j_A TPR repeat-containing protein associated with HSP;
tetratricopeptide repeat (TPR), HSP90 CO-factor, protein
BIN; NMR {Saccharomyces cerevisiae}
Length = 111
Score = 31.5 bits (72), Expect = 0.11
Identities = 10/78 (12%), Positives = 24/78 (30%), Gaps = 1/78 (1%)
Query: 93 SQAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQ 152
+AV + + + P ++ +++ AIQ +Q + +
Sbjct: 21 REAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKL 80
Query: 153 TYEILRLPYYGLYYYKQA 170
Y L L + +
Sbjct: 81 QYR-LELAQGAVGSVQIP 97
Score = 28.0 bits (63), Expect = 1.7
Identities = 10/88 (11%), Positives = 21/88 (23%), Gaps = 1/88 (1%)
Query: 117 GHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPN 176
G+ + A+ CY Q I + + L + +Q
Sbjct: 11 GNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTST 70
Query: 177 DPRMLTALGEAFEKQEKISEAMKCYNKS 204
+ + + E A+
Sbjct: 71 AEHVAIRSKLQY-RLELAQGAVGSVQIP 97
Score = 27.3 bits (61), Expect = 2.9
Identities = 7/45 (15%), Positives = 16/45 (35%), Gaps = 1/45 (2%)
Query: 94 QAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIE 138
QA+ Q+ L+ V +Y ++ A+ + +
Sbjct: 56 QAIQMCQQGLRYTSTAEHVAIRSKLQYR-LELAQGAVGSVQIPVV 99
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function;
2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Length = 126
Score = 31.7 bits (72), Expect = 0.12
Identities = 14/46 (30%), Positives = 21/46 (45%)
Query: 44 YLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPD 89
YLA + + + A K + LQ E +AK L R I + + D
Sbjct: 79 YLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDKAMKKD 124
Score = 31.7 bits (72), Expect = 0.12
Identities = 14/46 (30%), Positives = 21/46 (45%)
Query: 260 YLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPD 305
YLA + + + A K + LQ E +AK L R I + + D
Sbjct: 79 YLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDKAMKKD 124
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling
protein; 2.85A {Arabidopsis thaliana}
Length = 338
Score = 33.1 bits (75), Expect = 0.14
Identities = 21/166 (12%), Positives = 52/166 (31%), Gaps = 20/166 (12%)
Query: 34 DKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDESSS 93
++ K N K L+ A + + + + + + +
Sbjct: 174 ERIGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAY----------MGDDFMFQLYGKYQD 223
Query: 94 QAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQT 153
A L + LN + +++K + AI + + +A + G+
Sbjct: 224 MA-LAVKNPCHLN---------IAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKA 273
Query: 154 YEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMK 199
L +++A P+D + L E+++ + + K
Sbjct: 274 KAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQK 319
Score = 30.0 bits (67), Expect = 1.2
Identities = 14/54 (25%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Query: 190 KQEKISEAMKCYNKSRAIGDADGKALFKLAKLYDKLNETEAAADLFMEFVSKLD 243
K ++ EA+ N + + KALF+ K +L + ++A D F + K
Sbjct: 242 KLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRK-AQKYA 294
>2dba_A Smooth muscle cell associated protein-1, isoform 2;
tetratricopeptide repeat, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 148
Score = 30.8 bits (70), Expect = 0.33
Identities = 18/94 (19%), Positives = 38/94 (40%), Gaps = 3/94 (3%)
Query: 94 QAVLYFQRALKLNPNYLGVWTLLGHE---YMEMKNTNAAIQCYRQAIEINNLDYRAWYGL 150
A+ + +AL L+ L + ++++++ + A +AIE + D +A Y
Sbjct: 46 GALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRR 105
Query: 151 GQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTAL 184
Q E L + ++ + P + AL
Sbjct: 106 SQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEAL 139
Score = 26.2 bits (58), Expect = 9.9
Identities = 16/113 (14%), Positives = 38/113 (33%), Gaps = 3/113 (2%)
Query: 117 GHEYMEMKNTNAAIQCYRQAIEIN--NLDYRAWYG-LGQTYEILRLPYYGLYYYKQAHMV 173
G+E + + A+ Y QA+ ++ D + + L +A
Sbjct: 35 GNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEK 94
Query: 174 RPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKLAKLYDKLN 226
D + L +A EK ++ +A+ + ++ + L + +
Sbjct: 95 DGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISGPSS 147
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural
genomics, joint center FO structural genomics, JCSG;
HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Length = 212
Score = 30.7 bits (70), Expect = 0.47
Identities = 16/148 (10%), Positives = 38/148 (25%), Gaps = 27/148 (18%)
Query: 92 SSQAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLG 151
+++ +Q+ + L ++ + A ++A + D A L
Sbjct: 2 ATEPGSQYQQQAEAG--DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQGDGD--ALALLA 57
Query: 152 QTYEILRLPYYG---------LYYYKQAHMVRPNDPRMLTALGEAFEKQEKI----SEAM 198
Q ++A V L ++ + A+
Sbjct: 58 QLK------IRNPQQADYPQARQLAEKA--VEAGSKSGEIVLARVLVNRQAGATDVAHAI 109
Query: 199 KCYNKSRAIGDADG--KALFKLAKLYDK 224
+ ++D A L +Y
Sbjct: 110 TLLQDAARDSESDAAVDAQMLLGLIYAS 137
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR
repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1
d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Length = 457
Score = 31.2 bits (70), Expect = 0.48
Identities = 13/54 (24%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 190 KQEKISEAMKCYNKSRAIGDADGKALFKLAKLYDKLNETEAAADLFMEFVSKLD 243
K + ++A++C +K+ + A+ K L++ + +NE E+A F + V +++
Sbjct: 329 KLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEK-VLEVN 381
Score = 28.5 bits (63), Expect = 3.6
Identities = 21/154 (13%), Positives = 52/154 (33%), Gaps = 22/154 (14%)
Query: 46 ANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDESSSQAVLYFQRALKL 105
+ K A K + + + E S+A F A L
Sbjct: 275 GTVYFKGGKYMQAVIQYGKIVSW-------------LEMEYGLSEKESKASESFLLAAFL 321
Query: 106 NPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLY 165
N L Y++++ A++C +A+ +++ + + Y G+ ++
Sbjct: 322 N---------LAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKG 372
Query: 166 YYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMK 199
+++ V P + + +K ++ +E +
Sbjct: 373 DFEKVLEVNPQNKAARLQISMCQKKAKEHNERDR 406
Score = 28.1 bits (62), Expect = 5.5
Identities = 16/64 (25%), Positives = 25/64 (39%), Gaps = 3/64 (4%)
Query: 45 LANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDESSSQAVLYFQRALK 104
LA +LK A +C K L + K L R + + A F++ L+
Sbjct: 323 LAMCYLKLREYTKAVECCDKALGLDSA--NEKGLYR-RGEAQLLMNEFESAKGDFEKVLE 379
Query: 105 LNPN 108
+NP
Sbjct: 380 VNPQ 383
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.9 bits (66), Expect = 0.62
Identities = 12/42 (28%), Positives = 16/42 (38%), Gaps = 16/42 (38%)
Query: 189 EKQE--KISEAMKCYNKSRAIGDADGKALFKLAKLYDKLNET 228
EKQ K+ ++K Y AD A LA + T
Sbjct: 18 EKQALKKLQASLKLY--------ADDSAP-ALA-----IKAT 45
>1wth_A Protein GP5, tail-associated lysozyme; triple-stranded beta-helix,
OB fold, pseudohexamer, T4 tail HUB, GP5-GP27; 2.80A
{Enterobacteria phage T4} PDB: 2z6b_A 1k28_A 1pdl_A
Length = 584
Score = 30.9 bits (68), Expect = 0.66
Identities = 26/199 (13%), Positives = 52/199 (26%), Gaps = 24/199 (12%)
Query: 162 YGLYYYKQAHMVRPNDPRMLTALGEAFEKQ-----------EKISEAMKCYNKSRAIGDA 210
G H++ R + + + KQ + EA + + A
Sbjct: 195 EGYPTIGIGHLIMKQPVRDMAQINKVLSKQVGREITGNPGSITMEEATTLFERDLADMQR 254
Query: 211 DGKALFKLAKLYDKLNETEAAADLFMEF---VSKLDTF--------AAPPDKTCGFFAFK 259
D K+ K+ ++ +N + A M F V + F A +K
Sbjct: 255 DIKSHSKVGPVWQAVNRSRQMALENMAFQMGVGGVAKFNTMLTAMLAGDWEKAYKAGRDS 314
Query: 260 YLANH--HLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDESSSQPMECAVV 317
+ + E L + + D + + +
Sbjct: 315 LWYQQTKGRASRVTMIILTGNLESYGVEVKTPARSLLAMAATVAKSSDPADPPIPNDSRI 374
Query: 318 LDPVPPSTRSSKFPANPAY 336
L P S+ ++P
Sbjct: 375 LFKEPVSSYKGEYPYVHTM 393
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural
protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Length = 530
Score = 31.0 bits (69), Expect = 0.70
Identities = 6/43 (13%), Positives = 18/43 (41%)
Query: 99 FQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINN 141
++R + P+ W L ++ KN + + +++ +
Sbjct: 35 YERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVL 77
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A
{Xanthomonas campestris}
Length = 129
Score = 28.5 bits (64), Expect = 1.3
Identities = 9/61 (14%), Positives = 17/61 (27%), Gaps = 3/61 (4%)
Query: 184 LGEAFEKQEKISEAMKCYNKSRAIGDADGK---ALFKLAKLYDKLNETEAAADLFMEFVS 240
LGE++ A + + K L KL + A + +
Sbjct: 45 LGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVAT 104
Query: 241 K 241
+
Sbjct: 105 Q 105
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR
domain, ATPase, protein secret protein transport; 2.00A
{Mycobacterium tuberculosis}
Length = 282
Score = 29.3 bits (65), Expect = 1.5
Identities = 7/75 (9%), Positives = 20/75 (26%), Gaps = 7/75 (9%)
Query: 93 SQAVLYFQRALKLNPNYLGVWTLL-------GHEYMEMKNTNAAIQCYRQAIEINNLDYR 145
++++ F + + W + +++I+
Sbjct: 23 ARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLN 82
Query: 146 AWYGLGQTYEILRLP 160
A +G Y + P
Sbjct: 83 ARIAIGGLYGDITYP 97
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural
protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Length = 308
Score = 28.9 bits (64), Expect = 2.4
Identities = 22/179 (12%), Positives = 51/179 (28%), Gaps = 24/179 (13%)
Query: 122 EMKNTNAAIQCYRQAIEINNLDYRAWY--------------GLGQTYEILRLPYYGLYYY 167
+ T + Y Q + + WY G Y
Sbjct: 28 QTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIY 87
Query: 168 KQAHMVR-PNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKALF-KLAKLYDKL 225
++A + + A + E + K + YN+ AI D D ++ + K +
Sbjct: 88 ERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRA 147
Query: 226 NETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQH 284
++ +F + + + + + + + A+K + L+
Sbjct: 148 EGIKSGRMIFKKAREDA------RTRHHVYVTAALMEYYC--SKDKSVAFKIFELGLKK 198
Score = 27.7 bits (61), Expect = 5.3
Identities = 12/140 (8%), Positives = 35/140 (25%), Gaps = 10/140 (7%)
Query: 4 KLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQ 63
+ + E ++ ++ D + +A + + +
Sbjct: 107 DYEESRMKYEKVHSIYNRLLAIEDIDPT--------LVYIQYMKFARRAEGIKSGRMIFK 158
Query: 64 KCLQHEETAEEAKSLLRSIAQKRQPDESSSQAVLYFQRALKLNPNYLGVWTLLGHEYMEM 123
K + T + + + + S A F+ LK + +
Sbjct: 159 KAREDART--RHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHL 216
Query: 124 KNTNAAIQCYRQAIEINNLD 143
N + + + +L
Sbjct: 217 NEDNNTRVLFERVLTSGSLP 236
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt
pseudomonas, protein binding; 2.50A {Pseudomonas
fluorescens}
Length = 452
Score = 28.9 bits (65), Expect = 2.4
Identities = 20/151 (13%), Positives = 37/151 (24%), Gaps = 19/151 (12%)
Query: 93 SQAVLYFQRALKLNPNYLGVWTLLGHEYME----MKNTNAAIQCYRQAIEINNLDYRAWY 148
+A ++A L Y++ N NA Q + A
Sbjct: 91 HEAESLLKKAFANG--EGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQ---AAGYPEAGL 145
Query: 149 GLGQTYE---ILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQ---EKISEAMKCYN 202
Y + +A L ++K+ E+ +E +K
Sbjct: 146 AQVLLYRTQGTYDQHLDDVERICKA--ALNTTDICYVELATVYQKKQQPEQQAELLKQME 203
Query: 203 KSRAIGDADGKALFKLAKLYDKLNETEAAAD 233
+ G A + + T D
Sbjct: 204 AGVSRGTVT--AQRVDSVARVLGDATLGTPD 232
>3lib_A Hypothetical sensory transduction histidine kinas; PDC fold,
signaling protein; 2.99A {Methanosarcina mazei}
Length = 290
Score = 28.9 bits (64), Expect = 2.5
Identities = 8/44 (18%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Query: 73 EEAKSLLRSIAQKRQPDESSSQAVL--YFQRALKLNPNYLGVWT 114
+ ++ R+I+ + E++ + + L+ NP+ LG +
Sbjct: 33 KANLAIARTISTTMESYETADRDEALLILENLLRDNPHLLGTYV 76
>2v0o_A FCHO2, FCH domain only protein 2; lipid-binding protein, EFC
domain, vesicle trafficking, membrane curvature,
endocytosis, exocytosis, F-BAR domain; 2.30A {Homo
sapiens}
Length = 276
Score = 28.9 bits (64), Expect = 2.7
Identities = 21/141 (14%), Positives = 46/141 (32%), Gaps = 21/141 (14%)
Query: 196 EAMKCYNKSRAIGDADGKALFKLAKLYDK--------------LNETEAAADLFMEFVSK 241
E + I +A +++ KLAK TE A+ ++ V K
Sbjct: 36 ELADFVRERATIEEAYSRSMTKLAKSASNYSQLGTFAPVWDVFKTSTEKLANCHLDLVRK 95
Query: 242 LDTFAAPPDKTCGFF------AFKYLANHHLKANNLDTAYKCAQKCLQ-HEETAEEAKSL 294
L K + +A + + + QK + + E + L
Sbjct: 96 LQELIKEVQKYGEEQVKSHKKTKEEVAGTLEAVQTIQSITQALQKSKENYNAKCVEQERL 155
Query: 295 LRSIAQKRQPDESSSQPMECA 315
+ A +R+ ++++ + +
Sbjct: 156 KKEGATQREIEKAAVKSKKAT 176
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural
genomics, joint CENT structural genomics, JCSG, protein
structure initiative; 2.54A {Chlorobium tepidum} SCOP:
a.118.8.8
Length = 159
Score = 28.3 bits (62), Expect = 2.7
Identities = 10/55 (18%), Positives = 23/55 (41%), Gaps = 4/55 (7%)
Query: 90 ESSSQAVLYFQRALKLNPNYLGVWTLL----GHEYMEMKNTNAAIQCYRQAIEIN 140
S+ +A+ YF R +LN + +W + A+ +++ +E+
Sbjct: 78 HSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMI 132
Score = 27.5 bits (60), Expect = 3.9
Identities = 17/111 (15%), Positives = 38/111 (34%), Gaps = 23/111 (20%)
Query: 117 GHEYMEMKNTNAAIQCYRQAIEI----------NNLDYRAW---------YGLGQTYEIL 157
+ + A R+A+EI ++ + A+ GL E L
Sbjct: 18 AQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEAL 77
Query: 158 RLPYYGLYYYKQAHMVRPNDPRMLTAL----GEAFEKQEKISEAMKCYNKS 204
L+Y+ + + ++ ++ + A + + +EAM + K
Sbjct: 78 HSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKV 128
>3lic_A Sensor protein; PDC fold, ATP-binding, kinase, nucleotide-binding,
phosphopr transferase, transmembrane; 2.30A {Shewanella
oneidensis}
Length = 274
Score = 28.5 bits (63), Expect = 2.7
Identities = 8/48 (16%), Positives = 16/48 (33%), Gaps = 2/48 (4%)
Query: 69 EETAEEAKSLLRSIAQKRQPDESSSQAVL--YFQRALKLNPNYLGVWT 114
E + L I D+ ++ L ++ NP++ G
Sbjct: 30 EHAQANTQGLSDFIGLLADKDDINNPEKLKTVLTNRIQRNPDFFGSAI 77
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein
prenylation, metal-binding, prenyltransferase, zinc,
phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A*
3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A*
3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A*
Length = 331
Score = 28.2 bits (62), Expect = 4.2
Identities = 16/97 (16%), Positives = 35/97 (36%), Gaps = 10/97 (10%)
Query: 62 AQKCLQHEETAEEAKSLLRSIAQKRQPDESSSQAVLYFQRALKLNPNYLGVWTLLGHEYM 121
K L+ E+ + +S +++ QKRQ E + + L NP++ +W
Sbjct: 16 EAKRLEREQKLKLYQSATQAVFQKRQAGELDESVLELTSQILGANPDFATLWNCRREVLQ 75
Query: 122 EMKNTNAAIQC----------YRQAIEINNLDYRAWY 148
++ + + + +N Y W+
Sbjct: 76 HLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWH 112
>3li9_A Hypothetical sensory transduction histidine kinas; PDC fold,
signaling protein; HET: BTB; 1.70A {Methanosarcina
mazei} PDB: 3li8_A* 3lia_A*
Length = 291
Score = 28.1 bits (62), Expect = 4.5
Identities = 10/44 (22%), Positives = 19/44 (43%), Gaps = 2/44 (4%)
Query: 73 EEAKSLLRSIAQKRQPDESSSQAVL--YFQRALKLNPNYLGVWT 114
E +++ R++A S + +R L NP +GV+
Sbjct: 34 EANQAIARTLACTMAEYGSQDREEAMSIIKRILNENPQLIGVYL 77
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A
resolution, N-formylmethionine, alpha subunit; HET: FME;
2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1
c.10.2.2 PDB: 1ltx_A*
Length = 567
Score = 28.2 bits (62), Expect = 4.7
Identities = 13/52 (25%), Positives = 25/52 (48%)
Query: 62 AQKCLQHEETAEEAKSLLRSIAQKRQPDESSSQAVLYFQRALKLNPNYLGVW 113
K L+ E+ + +S +++ QKRQ E + + L NP++ +W
Sbjct: 15 EAKRLEREQKLKLYQSATQAVFQKRQAGELDESVLELTSQILGANPDFATLW 66
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase,
transferase-transferase inhibitor; HET: SUC 3CX FPP 778;
2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A*
3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Length = 349
Score = 27.9 bits (61), Expect = 5.4
Identities = 21/128 (16%), Positives = 38/128 (29%), Gaps = 12/128 (9%)
Query: 78 LLRSIAQKRQPDESSSQAVLYFQRALKLNPNYLGVWTLLGH--EYMEMKNTNAAIQCYRQ 135
L S S ++Y +++ L P+ + W L ++ +
Sbjct: 210 LRVSRPGAETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPILPAILPY 269
Query: 136 AIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKIS 195
N D G LP A L L ++F +Q ++
Sbjct: 270 TASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLA----------LEYLADSFIEQNRVD 319
Query: 196 EAMKCYNK 203
+A K + K
Sbjct: 320 DAAKVFEK 327
>3tef_A VCTP, iron(III) ABC transporter, periplasmic iron-compo binding
protein; siderophore-binding protein, transport protein;
1.70A {Vibrio cholerae}
Length = 292
Score = 27.4 bits (61), Expect = 7.0
Identities = 4/43 (9%), Positives = 13/43 (30%), Gaps = 5/43 (11%)
Query: 179 RMLTALGEAFEKQEKISEAMKCYNKS-----RAIGDADGKALF 216
+ LG+ F + + ++ + + A+
Sbjct: 119 QQWRNLGKVFAIEPAVEAKIEQVDAQFKSIMQYNQQHKSDAML 161
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller,
endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP:
i.23.1.1 PDB: 1xi5_A 3iyv_A
Length = 1630
Score = 27.7 bits (61), Expect = 7.4
Identities = 33/193 (17%), Positives = 64/193 (33%), Gaps = 22/193 (11%)
Query: 62 AQKCLQHEETAEEAKSLLRSIAQKRQPDESSSQAVLYFQRALKL--NPNYLGVWTLLGHE 119
A + +E EEA ++ R + + + RA + N VW+ L
Sbjct: 1056 ANIAISNELF-EEAFAIFRKFDVNTSAVQVLIEHIGNLDRAYEFAERCNEPAVWSQLAKA 1114
Query: 120 YMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPR 179
++ AI Y +A + ++ + L Y Q + +
Sbjct: 1115 QLQKGMVKEAIDSYIKADDPSSYMEVVQAAN------TSGNWEELVKYLQMARKKARESY 1168
Query: 180 MLTALGEAFEKQEKISEAMKCYNKS-----RAIGD-ADGKALFKLAKL-------YDKLN 226
+ T L A K +++E + N + +GD + ++ AKL + +L
Sbjct: 1169 VETELIFALAKTNRLAELEEFINGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLA 1228
Query: 227 ETEAAADLFMEFV 239
T + V
Sbjct: 1229 STLVHLGEYQAAV 1241
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2,
protein structure initiative; 2.15A {Vibrio
parahaemolyticus rimd 2210633}
Length = 93
Score = 26.0 bits (57), Expect = 8.3
Identities = 9/52 (17%), Positives = 24/52 (46%)
Query: 92 SSQAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLD 143
+ + L ++AL+L P +L+ +++ AI + ++ N+ +
Sbjct: 25 TDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPN 76
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.131 0.388
Gapped
Lambda K H
0.267 0.0778 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,265,544
Number of extensions: 303284
Number of successful extensions: 1820
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1167
Number of HSP's successfully gapped: 359
Length of query: 349
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 255
Effective length of database: 4,077,219
Effective search space: 1039690845
Effective search space used: 1039690845
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.0 bits)