BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9210
(234 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3OMW|A Chain A, Crystal Structure Of Ssu72, An Essential Eukaryotic
Phosphatase Specific For The C-Terminal Domain Of Rna
Polymerase Ii
pdb|3OMW|B Chain B, Crystal Structure Of Ssu72, An Essential Eukaryotic
Phosphatase Specific For The C-Terminal Domain Of Rna
Polymerase Ii
pdb|3OMW|C Chain C, Crystal Structure Of Ssu72, An Essential Eukaryotic
Phosphatase Specific For The C-Terminal Domain Of Rna
Polymerase Ii
pdb|3OMW|D Chain D, Crystal Structure Of Ssu72, An Essential Eukaryotic
Phosphatase Specific For The C-Terminal Domain Of Rna
Polymerase Ii
pdb|3OMX|A Chain A, Crystal Structure Of Ssu72 With Vanadate Complex
pdb|3OMX|B Chain B, Crystal Structure Of Ssu72 With Vanadate Complex
pdb|3OMX|C Chain C, Crystal Structure Of Ssu72 With Vanadate Complex
pdb|3OMX|D Chain D, Crystal Structure Of Ssu72 With Vanadate Complex
Length = 190
Score = 227 bits (578), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 114/230 (49%), Positives = 158/230 (68%), Gaps = 41/230 (17%)
Query: 5 LKVAVVCSSNMNRSMEAHAYLSKKGVDVKSFGTGDKKPQQWESVVIFHCCDFCSELIPLF 64
L VAVVCSSNMNRSMEAH +L+KKG +V+S+GTG++
Sbjct: 2 LAVAVVCSSNMNRSMEAHNFLAKKGFNVRSYGTGER------------------------ 37
Query: 65 FHKVFVFQISVNLFFQSITGTAMDKPNVYDFHTTTYEDIYQDLMNKDKAFYTRNGLLHML 124
+ G A DKPNVY+F T YEDIY+DL +KDK FYT+NGLLHML
Sbjct: 38 ---------------VKLPGMAFDKPNVYEF-GTKYEDIYRDLESKDKEFYTQNGLLHML 81
Query: 125 ERNKRIKLKPEKFQESKDKFDIIITCEERVYDQVLEHFDNQMISLENTPVHLINIDIQDN 184
+RN+RIK PE+FQ++K++FDII+T EERVYD V+ H ++ M S++N PVH++N+D+ DN
Sbjct: 82 DRNRRIKKCPERFQDTKEQFDIIVTVEERVYDLVVMHMES-MESVDNRPVHVLNVDVVDN 140
Query: 185 QEEATLGAFLASELMSMFIKCEDLDNEIDEIMQEFEEKCSRPLLHTILFY 234
E+A +GAF+ +++++M K DLDN+IDE++QEFEE+ R +LH++LFY
Sbjct: 141 AEDALMGAFVITDMINMMAKSTDLDNDIDELIQEFEERRKRVILHSVLFY 190
>pdb|3O2S|B Chain B, Crystal Structure Of The Human Symplekin-Ssu72 Complex
Length = 214
Score = 224 bits (570), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 122/235 (51%), Positives = 146/235 (62%), Gaps = 42/235 (17%)
Query: 1 MPSN-LKVAVVCSSNMNRSMEAHAYLSKKGVDVKSFGTGDKKPQQWESVVIFHCCDFCSE 59
MPS+ L+VAVVCSSN NRSMEAH LSK+G V+SFGTG
Sbjct: 21 MPSSPLRVAVVCSSNQNRSMEAHNILSKRGFSVRSFGTGTHV------------------ 62
Query: 60 LIPLFFHKVFVFQISVNLFFQSITGTAMDKPNVYDFHTTTYEDIYQDLMNKDKAFYTRNG 119
+ G A DKPNVYDF TTY+ +Y DL+ KDK YT+NG
Sbjct: 63 ---------------------KLPGPAPDKPNVYDF-KTTYDQMYNDLLRKDKELYTQNG 100
Query: 120 LLHMLERNKRIKLKPEKFQESKDKFDIIITCEERVYDQVLEHFDNQMISLENTPVHLINI 179
+LHML+RNKRIK +PE+FQ KD FD+I+TCEERVYDQV+E N PVH++N+
Sbjct: 101 ILHMLDRNKRIKPRPERFQNCKDLFDLILTCEERVYDQVVEDL-NSREQETCQPVHVVNV 159
Query: 180 DIQDNQEEATLGAFLASELMSMFIKCEDLDNEIDEIMQEFEEKCSRPLLHTILFY 234
DIQDN EEATLGAFL EL ED++NEIDE++QEFEEK R LHT+ FY
Sbjct: 160 DIQDNHEEATLGAFLICELCQCIQHTEDMENEIDELLQEFEEKSGRTFLHTVCFY 214
>pdb|3P9Y|A Chain A, Crystal Structure Of The Drosophila Melanogaster
Ssu72-Pctd Complex
pdb|3P9Y|B Chain B, Crystal Structure Of The Drosophila Melanogaster
Ssu72-Pctd Complex
pdb|3P9Y|C Chain C, Crystal Structure Of The Drosophila Melanogaster
Ssu72-Pctd Complex
pdb|3P9Y|D Chain D, Crystal Structure Of The Drosophila Melanogaster
Ssu72-Pctd Complex
Length = 198
Score = 223 bits (568), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 113/232 (48%), Positives = 158/232 (68%), Gaps = 41/232 (17%)
Query: 2 PSNLKVAVVCSSNMNRSMEAHAYLSKKGVDVKSFGTGDKKPQQWESVVIFHCCDFCSELI 61
PS L VAVV SSNMNRSMEAH +L+KKG +V+S+GTG++
Sbjct: 7 PSKLAVAVVDSSNMNRSMEAHNFLAKKGFNVRSYGTGER--------------------- 45
Query: 62 PLFFHKVFVFQISVNLFFQSITGTAMDKPNVYDFHTTTYEDIYQDLMNKDKAFYTRNGLL 121
+ G A DKPNVY+F T YEDIY+DL +KDK FYT+NGLL
Sbjct: 46 ------------------VKLPGMAFDKPNVYEF-GTKYEDIYRDLESKDKEFYTQNGLL 86
Query: 122 HMLERNKRIKLKPEKFQESKDKFDIIITCEERVYDQVLEHFDNQMISLENTPVHLINIDI 181
HML+RN+RIK PE+FQ++K++FDII+T EERVYD V+ H ++ M S++N PVH++N+D+
Sbjct: 87 HMLDRNRRIKKCPERFQDTKEQFDIIVTVEERVYDLVVMHMES-MESVDNRPVHVLNVDV 145
Query: 182 QDNQEEATLGAFLASELMSMFIKCEDLDNEIDEIMQEFEEKCSRPLLHTILF 233
+N E+A +GAF+ +++++M K DLDN+IDE++QEFEE+ R +LH++LF
Sbjct: 146 VNNAEDALMGAFVITDMINMMAKSTDLDNDIDELIQEFEERRKRVILHSVLF 197
>pdb|3O2Q|B Chain B, Crystal Structure Of The Human Symplekin-Ssu72-Ctd
Phosphopeptide Complex
pdb|3O2Q|E Chain E, Crystal Structure Of The Human Symplekin-Ssu72-Ctd
Phosphopeptide Complex
pdb|4H3H|B Chain B, Crystal Structure Of A Ternary Complex Of Human Symplekin
Ntd, Human Ssu72 And A Rna Poymerase Ii Ctd Peptide
Phosphorylated At Ser-7
pdb|4H3H|E Chain E, Crystal Structure Of A Ternary Complex Of Human Symplekin
Ntd, Human Ssu72 And A Rna Poymerase Ii Ctd Peptide
Phosphorylated At Ser-7
pdb|4H3K|B Chain B, Crystal Structure Of A Ternary Complex Of Human Symplekin
Ntd, Human Ssu72 And A Rna Polymerase Ii Ctd Peptide
Phosphorylated At Ser-2, Ser-5 And Ser-7
pdb|4H3K|E Chain E, Crystal Structure Of A Ternary Complex Of Human Symplekin
Ntd, Human Ssu72 And A Rna Polymerase Ii Ctd Peptide
Phosphorylated At Ser-2, Ser-5 And Ser-7
Length = 214
Score = 219 bits (559), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 121/235 (51%), Positives = 145/235 (61%), Gaps = 42/235 (17%)
Query: 1 MPSN-LKVAVVCSSNMNRSMEAHAYLSKKGVDVKSFGTGDKKPQQWESVVIFHCCDFCSE 59
MPS+ L+VAVV SSN NRSMEAH LSK+G V+SFGTG
Sbjct: 21 MPSSPLRVAVVSSSNQNRSMEAHNILSKRGFSVRSFGTGTHV------------------ 62
Query: 60 LIPLFFHKVFVFQISVNLFFQSITGTAMDKPNVYDFHTTTYEDIYQDLMNKDKAFYTRNG 119
+ G A DKPNVYDF TTY+ +Y DL+ KDK YT+NG
Sbjct: 63 ---------------------KLPGPAPDKPNVYDF-KTTYDQMYNDLLRKDKELYTQNG 100
Query: 120 LLHMLERNKRIKLKPEKFQESKDKFDIIITCEERVYDQVLEHFDNQMISLENTPVHLINI 179
+LHML+RNKRIK +PE+FQ KD FD+I+TCEERVYDQV+E N PVH++N+
Sbjct: 101 ILHMLDRNKRIKPRPERFQNCKDLFDLILTCEERVYDQVVEDL-NSREQETCQPVHVVNV 159
Query: 180 DIQDNQEEATLGAFLASELMSMFIKCEDLDNEIDEIMQEFEEKCSRPLLHTILFY 234
DIQDN EEATLGAFL EL ED++NEIDE++QEFEEK R LHT+ FY
Sbjct: 160 DIQDNHEEATLGAFLICELCQCIQHTEDMENEIDELLQEFEEKSGRTFLHTVCFY 214
>pdb|3FDF|A Chain A, Crystal Structure Of The Serine Phosphatase Of Rna
Polymerase Ii Ctd (Ssu72 Superfamily) From Drosophila
Melanogaster. Orthorhombic Crystal Form. Northeast
Structural Genomics Consortium Target Fr253.
pdb|3FDF|B Chain B, Crystal Structure Of The Serine Phosphatase Of Rna
Polymerase Ii Ctd (Ssu72 Superfamily) From Drosophila
Melanogaster. Orthorhombic Crystal Form. Northeast
Structural Genomics Consortium Target Fr253.
pdb|3FDF|C Chain C, Crystal Structure Of The Serine Phosphatase Of Rna
Polymerase Ii Ctd (Ssu72 Superfamily) From Drosophila
Melanogaster. Orthorhombic Crystal Form. Northeast
Structural Genomics Consortium Target Fr253.
pdb|3FDF|D Chain D, Crystal Structure Of The Serine Phosphatase Of Rna
Polymerase Ii Ctd (Ssu72 Superfamily) From Drosophila
Melanogaster. Orthorhombic Crystal Form. Northeast
Structural Genomics Consortium Target Fr253.
pdb|3FMV|A Chain A, Crystal Structure Of The Serine Phosphatase Of Rna
Polymerase Ii Ctd (Ssu72 Superfamily) From Drosophila
Melanogaster. Monoclinic Crystal Form. Northeast
Structural Genomics Consortium Target Fr253.
pdb|3FMV|B Chain B, Crystal Structure Of The Serine Phosphatase Of Rna
Polymerase Ii Ctd (Ssu72 Superfamily) From Drosophila
Melanogaster. Monoclinic Crystal Form. Northeast
Structural Genomics Consortium Target Fr253.
pdb|3FMV|C Chain C, Crystal Structure Of The Serine Phosphatase Of Rna
Polymerase Ii Ctd (Ssu72 Superfamily) From Drosophila
Melanogaster. Monoclinic Crystal Form. Northeast
Structural Genomics Consortium Target Fr253.
pdb|3FMV|D Chain D, Crystal Structure Of The Serine Phosphatase Of Rna
Polymerase Ii Ctd (Ssu72 Superfamily) From Drosophila
Melanogaster. Monoclinic Crystal Form. Northeast
Structural Genomics Consortium Target Fr253.
pdb|3FMV|E Chain E, Crystal Structure Of The Serine Phosphatase Of Rna
Polymerase Ii Ctd (Ssu72 Superfamily) From Drosophila
Melanogaster. Monoclinic Crystal Form. Northeast
Structural Genomics Consortium Target Fr253.
pdb|3FMV|F Chain F, Crystal Structure Of The Serine Phosphatase Of Rna
Polymerase Ii Ctd (Ssu72 Superfamily) From Drosophila
Melanogaster. Monoclinic Crystal Form. Northeast
Structural Genomics Consortium Target Fr253.
pdb|3FMV|G Chain G, Crystal Structure Of The Serine Phosphatase Of Rna
Polymerase Ii Ctd (Ssu72 Superfamily) From Drosophila
Melanogaster. Monoclinic Crystal Form. Northeast
Structural Genomics Consortium Target Fr253.
pdb|3FMV|H Chain H, Crystal Structure Of The Serine Phosphatase Of Rna
Polymerase Ii Ctd (Ssu72 Superfamily) From Drosophila
Melanogaster. Monoclinic Crystal Form. Northeast
Structural Genomics Consortium Target Fr253
Length = 195
Score = 217 bits (552), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 111/233 (47%), Positives = 153/233 (65%), Gaps = 41/233 (17%)
Query: 2 PSNLKVAVVCSSNMNRSMEAHAYLSKKGVDVKSFGTGDKKPQQWESVVIFHCCDFCSELI 61
PS L VAVVCSSN NRS EAH +L+KKG +V+S+GTG++
Sbjct: 4 PSKLAVAVVCSSNXNRSXEAHNFLAKKGFNVRSYGTGER--------------------- 42
Query: 62 PLFFHKVFVFQISVNLFFQSITGTAMDKPNVYDFHTTTYEDIYQDLMNKDKAFYTRNGLL 121
+ G A DKPNVY+F T YEDIY+DL +KDK FYT+NGLL
Sbjct: 43 ------------------VKLPGXAFDKPNVYEF-GTKYEDIYRDLESKDKEFYTQNGLL 83
Query: 122 HMLERNKRIKLKPEKFQESKDKFDIIITCEERVYDQVLEHFDNQMISLENTPVHLINIDI 181
H L+RN+RIK PE+FQ++K++FDII+T EERVYD V+ H ++ S++N PVH++N+D+
Sbjct: 84 HXLDRNRRIKKCPERFQDTKEQFDIIVTVEERVYDLVVXHXESXE-SVDNRPVHVLNVDV 142
Query: 182 QDNQEEATLGAFLASELMSMFIKCEDLDNEIDEIMQEFEEKCSRPLLHTILFY 234
DN E+A GAF+ ++ ++ K DLDN+IDE++QEFEE+ R +LH++LFY
Sbjct: 143 VDNAEDALXGAFVITDXINXXAKSTDLDNDIDELIQEFEERRKRVILHSVLFY 195
>pdb|3AAD|A Chain A, Structure Of The Histone Chaperone Cia/asf1-double
Bromodomain Complex Linking Histone Modifications And
Site-specific Histone Eviction
Length = 292
Score = 31.2 bits (69), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 24/107 (22%), Positives = 44/107 (41%), Gaps = 5/107 (4%)
Query: 42 PQQWESVVIFHCCDFCSELIPLFFHKVFVFQISVNLFFQSITGTAMDKPNVYDFHTTTYE 101
P++ V CD+ + + ++++ +SI D PN Y FHT
Sbjct: 15 PKKKRRVGTTVHCDYLNRPHKSIHRRRTDPMVTLSSILESIINDMRDLPNTYPFHTPVNA 74
Query: 102 DIYQDLMNKDKAFYTRNGLLHMLERNKRIKLKPEKFQESKDKFDIII 148
+ +D TR L L N R +L P + +E ++ ++I+
Sbjct: 75 KVVKDYYK----IITRPMDLQTLRENVRKRLYPSR-EEFREHLELIV 116
>pdb|1EQF|A Chain A, Crystal Structure Of The Double Bromodomain Module From
Human Tafii250
Length = 280
Score = 30.8 bits (68), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 35/76 (46%), Gaps = 5/76 (6%)
Query: 73 ISVNLFFQSITGTAMDKPNVYDFHTTTYEDIYQDLMNKDKAFYTRNGLLHMLERNKRIKL 132
++++ +SI D PN Y FHT + +D TR L L N R +L
Sbjct: 25 VTLSSILESIINDMRDLPNTYPFHTPVNAKVVKDYY----KIITRPMDLQTLRENVRKRL 80
Query: 133 KPEKFQESKDKFDIII 148
P + +E ++ ++I+
Sbjct: 81 YPSR-EEFREHLELIV 95
>pdb|3UV5|A Chain A, Crystal Structure Of The Tandem Bromodomains Of Human
Transcription Initiation Factor Tfiid Subunit 1 (Taf1)
Length = 265
Score = 30.8 bits (68), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 35/76 (46%), Gaps = 5/76 (6%)
Query: 73 ISVNLFFQSITGTAMDKPNVYDFHTTTYEDIYQDLMNKDKAFYTRNGLLHMLERNKRIKL 132
++++ +SI D PN Y FHT + +D TR L L N R +L
Sbjct: 13 VTLSSILESIINDMRDLPNTYPFHTPVNAKVVKDYY----KIITRPMDLQTLRENVRKRL 68
Query: 133 KPEKFQESKDKFDIII 148
P + +E ++ ++I+
Sbjct: 69 YPSR-EEFREHLELIV 83
>pdb|2EPL|X Chain X, N-Acetyl-B-D-Glucosaminidase (Gcna) From Streptococcus
Gordonii
pdb|2EPM|X Chain X, N-Acetyl-B-D-Glucoasminidase (Gcna) From Stretococcus
Gordonii
pdb|2EPN|A Chain A, N-Acetyl-B-D-Glucosaminidase (Gcna) From Streptococcus
Gordonii
pdb|2EPN|B Chain B, N-Acetyl-B-D-Glucosaminidase (Gcna) From Streptococcus
Gordonii
pdb|2EPO|A Chain A, N-Acetyl-B-D-Glucosaminidase (Gcna) From Streptococcus
Gordonii
pdb|2EPO|B Chain B, N-Acetyl-B-D-Glucosaminidase (Gcna) From Streptococcus
Gordonii
Length = 627
Score = 30.4 bits (67), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 6/56 (10%)
Query: 130 IKLKPEKFQESKDKFDIIITCEERVYD------QVLEHFDNQMISLENTPVHLINI 179
+K ++ QE +D DI++ EE+VYD Q + H + I++ HL+ +
Sbjct: 175 VKWGIKEVQELRDVEDILLIGEEKVYDLIEGMFQTMAHLHTRKINIGMDEAHLVGL 230
>pdb|2EPK|X Chain X, N-Acetyl-B-D-Glucosaminidase (Gcna) From Streptococcus
Gordonii
Length = 627
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 6/56 (10%)
Query: 130 IKLKPEKFQESKDKFDIIITCEERVYD------QVLEHFDNQMISLENTPVHLINI 179
+K ++ QE +D DI++ EE+VYD Q H + I++ HL+ +
Sbjct: 175 VKWGIKEVQELRDVEDILLIGEEKVYDLIEGXFQTXAHLHTRKINIGXDEAHLVGL 230
>pdb|1NFI|E Chain E, I-Kappa-B-AlphaNF-Kappa-B Complex
pdb|1NFI|F Chain F, I-Kappa-B-AlphaNF-Kappa-B Complex
Length = 213
Score = 28.9 bits (63), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 31/71 (43%), Gaps = 9/71 (12%)
Query: 168 SLENTPVHLINIDIQDNQEEATLGAFLASEL------MSMFIKCEDLDNEIDEIMQEFEE 221
+L+ TP+HL I Q EA LGA EL + + CE + +
Sbjct: 40 NLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQ---GCLASVGVLTQ 96
Query: 222 KCSRPLLHTIL 232
C+ P LH+IL
Sbjct: 97 SCTTPHLHSIL 107
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 28.1 bits (61), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 92 VYDFHTTTYEDIYQDLMNKDKAFYTRNG 119
++D T EDI Q+ +NK F RNG
Sbjct: 403 LWDLETEEVEDILQEFVNKSLLFCNRNG 430
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 28.1 bits (61), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 92 VYDFHTTTYEDIYQDLMNKDKAFYTRNG 119
++D T EDI Q+ +NK F RNG
Sbjct: 410 LWDLETEEVEDILQEFVNKSLLFCNRNG 437
>pdb|1IKN|D Chain D, IkappabalphaNF-Kappab Complex
Length = 236
Score = 28.1 bits (61), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 31/71 (43%), Gaps = 9/71 (12%)
Query: 168 SLENTPVHLINIDIQDNQEEATLGAFLASEL------MSMFIKCEDLDNEIDEIMQEFEE 221
+L+ TP+HL I Q EA LGA EL + + CE + +
Sbjct: 43 NLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACE---QGCLASVGVLTQ 99
Query: 222 KCSRPLLHTIL 232
C+ P LH+IL
Sbjct: 100 SCTTPHLHSIL 110
>pdb|1Z6T|A Chain A, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|B Chain B, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|C Chain C, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|D Chain D, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
Length = 591
Score = 27.3 bits (59), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 92 VYDFHTTTYEDIYQDLMNKDKAFYTRNG 119
++D T EDI Q+ +NK F RNG
Sbjct: 403 LWDMETEEVEDILQEFVNKSLLFCDRNG 430
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 27.3 bits (59), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 92 VYDFHTTTYEDIYQDLMNKDKAFYTRNG 119
++D T EDI Q+ +NK F RNG
Sbjct: 409 LWDMETEEVEDILQEFVNKSLLFCDRNG 436
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.137 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,894,431
Number of Sequences: 62578
Number of extensions: 285902
Number of successful extensions: 751
Number of sequences better than 100.0: 27
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 718
Number of HSP's gapped (non-prelim): 34
length of query: 234
length of database: 14,973,337
effective HSP length: 96
effective length of query: 138
effective length of database: 8,965,849
effective search space: 1237287162
effective search space used: 1237287162
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 50 (23.9 bits)