BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9210
(234 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q6PC19|SSU72_DANRE RNA polymerase II subunit A C-terminal domain phosphatase SSU72
OS=Danio rerio GN=ssu72 PE=2 SV=1
Length = 194
Score = 228 bits (581), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 120/233 (51%), Positives = 146/233 (62%), Gaps = 41/233 (17%)
Query: 2 PSNLKVAVVCSSNMNRSMEAHAYLSKKGVDVKSFGTGDKKPQQWESVVIFHCCDFCSELI 61
P L+VAVVCSSN NRSMEAH LSK+G DV+SFGTG
Sbjct: 3 PHPLRVAVVCSSNQNRSMEAHNILSKRGFDVRSFGTGTHV-------------------- 42
Query: 62 PLFFHKVFVFQISVNLFFQSITGTAMDKPNVYDFHTTTYEDIYQDLMNKDKAFYTRNGLL 121
+ G A DKPN+YDF TTYE +Y DL+ KDK YT+NG+L
Sbjct: 43 -------------------KLPGPAPDKPNIYDF-KTTYEQMYNDLVRKDKELYTQNGIL 82
Query: 122 HMLERNKRIKLKPEKFQESKDKFDIIITCEERVYDQVLEHFDNQMISLENTPVHLINIDI 181
HML+RNKRIK +PE+FQ +D+FD++ITCEERVYDQVLE N PVH+IN+DI
Sbjct: 83 HMLDRNKRIKSRPERFQSCRDQFDLVITCEERVYDQVLEDL-NSREQESFQPVHVINVDI 141
Query: 182 QDNQEEATLGAFLASELMSMFIKCEDLDNEIDEIMQEFEEKCSRPLLHTILFY 234
QDN EEATLGAFL EL +D++NE+DE++QEFEEK RP LH++ FY
Sbjct: 142 QDNHEEATLGAFLICELCQCIQHTDDMENEMDELLQEFEEKSHRPFLHSVCFY 194
>sp|Q5ZJQ7|SSU72_CHICK RNA polymerase II subunit A C-terminal domain phosphatase SSU72
OS=Gallus gallus GN=SSU72 PE=2 SV=1
Length = 194
Score = 224 bits (572), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 123/235 (52%), Positives = 146/235 (62%), Gaps = 42/235 (17%)
Query: 1 MPSN-LKVAVVCSSNMNRSMEAHAYLSKKGVDVKSFGTGDKKPQQWESVVIFHCCDFCSE 59
MPS+ L+VAVVCSSN NRSMEAH LSK+G V+SFGTG
Sbjct: 1 MPSSPLRVAVVCSSNQNRSMEAHNILSKRGFSVRSFGTGTHV------------------ 42
Query: 60 LIPLFFHKVFVFQISVNLFFQSITGTAMDKPNVYDFHTTTYEDIYQDLMNKDKAFYTRNG 119
+ G A DKPNVYDF TTY+ +Y DL+ KDK YT+NG
Sbjct: 43 ---------------------KLPGPAPDKPNVYDF-KTTYDQMYNDLLRKDKELYTQNG 80
Query: 120 LLHMLERNKRIKLKPEKFQESKDKFDIIITCEERVYDQVLEHFDNQMISLENTPVHLINI 179
+LHML+RNKRIK +PE+FQ KD FD+I+TCEERVYDQV+E N PVH+IN+
Sbjct: 81 ILHMLDRNKRIKPRPERFQNCKDVFDLILTCEERVYDQVVEDL-NSREQETCQPVHVINV 139
Query: 180 DIQDNQEEATLGAFLASELMSMFIKCEDLDNEIDEIMQEFEEKCSRPLLHTILFY 234
DIQDN EEATLGAFL EL ED++NEIDE++QEFEEK R LHT+ FY
Sbjct: 140 DIQDNHEEATLGAFLICELCQCIQHTEDMENEIDELLQEFEEKSGRTFLHTVCFY 194
>sp|Q17QI2|SSU72_BOVIN RNA polymerase II subunit A C-terminal domain phosphatase SSU72
OS=Bos taurus GN=SSU72 PE=2 SV=1
Length = 194
Score = 224 bits (571), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 123/235 (52%), Positives = 146/235 (62%), Gaps = 42/235 (17%)
Query: 1 MPSN-LKVAVVCSSNMNRSMEAHAYLSKKGVDVKSFGTGDKKPQQWESVVIFHCCDFCSE 59
MPS+ L+VAVVCSSN NRSMEAH LSK+G V+SFGTG
Sbjct: 1 MPSSPLRVAVVCSSNQNRSMEAHNILSKRGFSVRSFGTGTHV------------------ 42
Query: 60 LIPLFFHKVFVFQISVNLFFQSITGTAMDKPNVYDFHTTTYEDIYQDLMNKDKAFYTRNG 119
+ G A DKPNVYDF TTY+ +Y DL+ KDK YT+NG
Sbjct: 43 ---------------------KLPGPAPDKPNVYDF-KTTYDQMYNDLLRKDKELYTQNG 80
Query: 120 LLHMLERNKRIKLKPEKFQESKDKFDIIITCEERVYDQVLEHFDNQMISLENTPVHLINI 179
+LHML+RNKRIK +PE+FQ KD FD+I+TCEERVYDQV+E N PVH+IN+
Sbjct: 81 ILHMLDRNKRIKPRPERFQNCKDLFDLILTCEERVYDQVVEDL-NSREQETCQPVHVINV 139
Query: 180 DIQDNQEEATLGAFLASELMSMFIKCEDLDNEIDEIMQEFEEKCSRPLLHTILFY 234
DIQDN EEATLGAFL EL ED++NEIDE++QEFEEK R LHT+ FY
Sbjct: 140 DIQDNHEEATLGAFLICELCQCIQHTEDMENEIDELLQEFEEKSGRTFLHTVCFY 194
>sp|Q4KLK9|SSU72_RAT RNA polymerase II subunit A C-terminal domain phosphatase SSU72
OS=Rattus norvegicus GN=Ssu72 PE=2 SV=1
Length = 194
Score = 224 bits (570), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 122/235 (51%), Positives = 146/235 (62%), Gaps = 42/235 (17%)
Query: 1 MPSN-LKVAVVCSSNMNRSMEAHAYLSKKGVDVKSFGTGDKKPQQWESVVIFHCCDFCSE 59
MPS+ L+VAVVCSSN NRSMEAH LSK+G V+SFGTG
Sbjct: 1 MPSSPLRVAVVCSSNQNRSMEAHNILSKRGFSVRSFGTGTHV------------------ 42
Query: 60 LIPLFFHKVFVFQISVNLFFQSITGTAMDKPNVYDFHTTTYEDIYQDLMNKDKAFYTRNG 119
+ G A DKPNVYDF TTY+ +Y DL+ KDK YT+NG
Sbjct: 43 ---------------------KLPGPAPDKPNVYDF-KTTYDQMYNDLLRKDKELYTQNG 80
Query: 120 LLHMLERNKRIKLKPEKFQESKDKFDIIITCEERVYDQVLEHFDNQMISLENTPVHLINI 179
+LHML+RNKRIK +PE+FQ KD FD+I+TCEERVYDQV+E N PVH++N+
Sbjct: 81 ILHMLDRNKRIKPRPERFQNCKDLFDLILTCEERVYDQVVEDL-NSREQETCQPVHVVNV 139
Query: 180 DIQDNQEEATLGAFLASELMSMFIKCEDLDNEIDEIMQEFEEKCSRPLLHTILFY 234
DIQDN EEATLGAFL EL ED++NEIDE++QEFEEK R LHT+ FY
Sbjct: 140 DIQDNHEEATLGAFLICELCQCIQHTEDMENEIDELLQEFEEKSGRAFLHTVCFY 194
>sp|Q9NP77|SSU72_HUMAN RNA polymerase II subunit A C-terminal domain phosphatase SSU72
OS=Homo sapiens GN=SSU72 PE=1 SV=1
Length = 194
Score = 224 bits (570), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 122/235 (51%), Positives = 146/235 (62%), Gaps = 42/235 (17%)
Query: 1 MPSN-LKVAVVCSSNMNRSMEAHAYLSKKGVDVKSFGTGDKKPQQWESVVIFHCCDFCSE 59
MPS+ L+VAVVCSSN NRSMEAH LSK+G V+SFGTG
Sbjct: 1 MPSSPLRVAVVCSSNQNRSMEAHNILSKRGFSVRSFGTGTHV------------------ 42
Query: 60 LIPLFFHKVFVFQISVNLFFQSITGTAMDKPNVYDFHTTTYEDIYQDLMNKDKAFYTRNG 119
+ G A DKPNVYDF TTY+ +Y DL+ KDK YT+NG
Sbjct: 43 ---------------------KLPGPAPDKPNVYDF-KTTYDQMYNDLLRKDKELYTQNG 80
Query: 120 LLHMLERNKRIKLKPEKFQESKDKFDIIITCEERVYDQVLEHFDNQMISLENTPVHLINI 179
+LHML+RNKRIK +PE+FQ KD FD+I+TCEERVYDQV+E N PVH++N+
Sbjct: 81 ILHMLDRNKRIKPRPERFQNCKDLFDLILTCEERVYDQVVEDL-NSREQETCQPVHVVNV 139
Query: 180 DIQDNQEEATLGAFLASELMSMFIKCEDLDNEIDEIMQEFEEKCSRPLLHTILFY 234
DIQDN EEATLGAFL EL ED++NEIDE++QEFEEK R LHT+ FY
Sbjct: 140 DIQDNHEEATLGAFLICELCQCIQHTEDMENEIDELLQEFEEKSGRTFLHTVCFY 194
>sp|Q9CY97|SSU72_MOUSE RNA polymerase II subunit A C-terminal domain phosphatase SSU72
OS=Mus musculus GN=Ssu72 PE=2 SV=1
Length = 194
Score = 222 bits (565), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 121/235 (51%), Positives = 145/235 (61%), Gaps = 42/235 (17%)
Query: 1 MPSN-LKVAVVCSSNMNRSMEAHAYLSKKGVDVKSFGTGDKKPQQWESVVIFHCCDFCSE 59
MPS+ L+VAVVCSSN NRSMEAH LSK+G V+SFGTG
Sbjct: 1 MPSSPLRVAVVCSSNQNRSMEAHNILSKRGFSVRSFGTGTHV------------------ 42
Query: 60 LIPLFFHKVFVFQISVNLFFQSITGTAMDKPNVYDFHTTTYEDIYQDLMNKDKAFYTRNG 119
+ G A DKPNVYDF TTY+ +Y DL+ KDK YT+NG
Sbjct: 43 ---------------------KLPGPAPDKPNVYDF-KTTYDQMYNDLLRKDKELYTQNG 80
Query: 120 LLHMLERNKRIKLKPEKFQESKDKFDIIITCEERVYDQVLEHFDNQMISLENTPVHLINI 179
+LHML+RNKRIK +PE+FQ D FD+I+TCEERVYDQV+E N PVH++N+
Sbjct: 81 ILHMLDRNKRIKPRPERFQNCTDLFDLILTCEERVYDQVVEDL-NSREQETCQPVHVVNV 139
Query: 180 DIQDNQEEATLGAFLASELMSMFIKCEDLDNEIDEIMQEFEEKCSRPLLHTILFY 234
DIQDN EEATLGAFL EL ED++NEIDE++QEFEEK R LHT+ FY
Sbjct: 140 DIQDNHEEATLGAFLICELCQCIQHTEDMENEIDELLQEFEEKSGRAFLHTVCFY 194
>sp|Q6NRQ7|SSU72_XENLA RNA polymerase II subunit A C-terminal domain phosphatase SSU72
OS=Xenopus laevis GN=ssu72 PE=2 SV=1
Length = 194
Score = 221 bits (563), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 121/235 (51%), Positives = 145/235 (61%), Gaps = 42/235 (17%)
Query: 1 MPSN-LKVAVVCSSNMNRSMEAHAYLSKKGVDVKSFGTGDKKPQQWESVVIFHCCDFCSE 59
MP+ L+VAVVCSSN NRSMEAH LSK+ +V+SFGTG
Sbjct: 1 MPTAPLRVAVVCSSNQNRSMEAHNILSKRSFNVRSFGTGTHV------------------ 42
Query: 60 LIPLFFHKVFVFQISVNLFFQSITGTAMDKPNVYDFHTTTYEDIYQDLMNKDKAFYTRNG 119
+ G A DKPNVYDF TTYE +Y DL+ KDK YT+NG
Sbjct: 43 ---------------------KLPGPAPDKPNVYDF-KTTYEQMYSDLLKKDKELYTQNG 80
Query: 120 LLHMLERNKRIKLKPEKFQESKDKFDIIITCEERVYDQVLEHFDNQMISLENTPVHLINI 179
+LHML+RN+RIK +PE+FQ KD FD++ITCEERVYDQV+E N PVH+IN+
Sbjct: 81 ILHMLDRNRRIKPRPERFQNCKDYFDLVITCEERVYDQVVEEL-NSREQETCQPVHVINV 139
Query: 180 DIQDNQEEATLGAFLASELMSMFIKCEDLDNEIDEIMQEFEEKCSRPLLHTILFY 234
DIQDN EEATLGAFL EL ED++NEIDE++QEFE+K R LHTI FY
Sbjct: 140 DIQDNHEEATLGAFLICELCQCIQHTEDMENEIDELLQEFEDKSGRTFLHTICFY 194
>sp|A6NK39|S72L1_HUMAN Putative RNA polymerase II subunit A C-terminal domain phosphatase
SSU72-like protein 1 OS=Homo sapiens PE=3 SV=1
Length = 194
Score = 170 bits (430), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 102/237 (43%), Positives = 139/237 (58%), Gaps = 47/237 (19%)
Query: 1 MPSNLKVAVVCSSNMNRSMEAHAYLSKKGVDVKSFGTGDKKPQQWESVVIFHCCDFCSEL 60
+ S L+VAVVC SN+NRSMEAH+ L +KG+ V+SFGT ES V
Sbjct: 2 LSSPLRVAVVCVSNVNRSMEAHSILRRKGLSVRSFGT--------ESHV----------- 42
Query: 61 IPLFFHKVFVFQISVNLFFQSITGTAMDKPNVYDFHTTTYEDIYQDLMNKDKAFYTRNGL 120
+ G ++P VYDF TTY+ +Y DL+ KD+ YTRNG+
Sbjct: 43 --------------------RLPGPRPNRPVVYDF-ATTYKQMYNDLLRKDRERYTRNGI 81
Query: 121 LHMLERNKRIKLKPEKFQESKDKFDIIITCEERVYDQVLEHFDNQMISLEN---TPVHLI 177
LH+L RN+RIK PE+FQE D FD+I TCEE VYD V+E + S E PVH+I
Sbjct: 82 LHILGRNERIKPGPERFQECTDSFDVIFTCEESVYDTVVE----DLCSREQQTFQPVHVI 137
Query: 178 NIDIQDNQEEATLGAFLASELMSMFIKCEDLDNEIDEIMQEFEEKCSRPLLHTILFY 234
N+DIQD E+ATLGAFL E+ + +D+++ ++E++ + EEK + LHT+ FY
Sbjct: 138 NMDIQDTLEDATLGAFLICEICQCLQQSDDIEDNLEELLLQMEEKAGKSFLHTVCFY 194
>sp|A8MSY0|S72L2_HUMAN Putative RNA polymerase II subunit A C-terminal domain phosphatase
SSU72-like protein 2 OS=Homo sapiens PE=3 SV=1
Length = 194
Score = 169 bits (427), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 102/237 (43%), Positives = 140/237 (59%), Gaps = 47/237 (19%)
Query: 1 MPSNLKVAVVCSSNMNRSMEAHAYLSKKGVDVKSFGTGDKKPQQWESVVIFHCCDFCSEL 60
+ S L+VAVVC SN+NRSMEAH+ L KKG+ V+SFGT ES V
Sbjct: 2 LSSTLRVAVVCVSNVNRSMEAHSILRKKGLSVRSFGT--------ESHV----------- 42
Query: 61 IPLFFHKVFVFQISVNLFFQSITGTAMDKPNVYDFHTTTYEDIYQDLMNKDKAFYTRNGL 120
+ G ++P VYDF TTY+++Y DL+ KD+ YTRNG+
Sbjct: 43 --------------------RLPGPRPNRPVVYDF-ATTYKEMYNDLLRKDRECYTRNGI 81
Query: 121 LHMLERNKRIKLKPEKFQESKDKFDIIITCEERVYDQVLEHFDNQMISLEN---TPVHLI 177
LH+L RN+RIK PE+FQE D FD+I TCEE VYD V+E + S E PVH+I
Sbjct: 82 LHILGRNERIKPGPERFQECTDFFDVIFTCEESVYDTVVE----DLCSREQQTFQPVHVI 137
Query: 178 NIDIQDNQEEATLGAFLASELMSMFIKCEDLDNEIDEIMQEFEEKCSRPLLHTILFY 234
N++IQD E+ATLGAFL E+ + +D+++ ++E++ + EEK + LHT+ FY
Sbjct: 138 NMEIQDTLEDATLGAFLICEICQCLQQSDDMEDNLEELLLQMEEKAGKSFLHTVCFY 194
>sp|A6NG73|S72L3_HUMAN Putative RNA polymerase II subunit A C-terminal domain phosphatase
SSU72-like protein 3 OS=Homo sapiens PE=3 SV=2
Length = 194
Score = 162 bits (409), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 99/237 (41%), Positives = 137/237 (57%), Gaps = 47/237 (19%)
Query: 1 MPSNLKVAVVCSSNMNRSMEAHAYLSKKGVDVKSFGTGDKKPQQWESVVIFHCCDFCSEL 60
+ S L+VAVVC SN+NRSMEAH+ L +KG+ V+SFGT ES V
Sbjct: 2 LSSPLRVAVVCVSNINRSMEAHSILRRKGLSVRSFGT--------ESHV----------- 42
Query: 61 IPLFFHKVFVFQISVNLFFQSITGTAMDKPNVYDFHTTTYEDIYQDLMNKDKAFYTRNGL 120
+ G + P VYDF TTY+++Y DL+ KD+ YT NG+
Sbjct: 43 --------------------RLPGRRPNHPVVYDF-ATTYKEMYNDLLRKDRECYTHNGI 81
Query: 121 LHMLERNKRIKLKPEKFQESKDKFDIIITCEERVYDQVLEHFDNQMISLEN---TPVHLI 177
LH+L RN+RIK PE+FQE + FD+I TCEERVYD V+E + S E PVH+I
Sbjct: 82 LHILGRNERIKPGPERFQECTEFFDVIFTCEERVYDTVVE----DLCSREQQTFQPVHVI 137
Query: 178 NIDIQDNQEEATLGAFLASELMSMFIKCEDLDNEIDEIMQEFEEKCSRPLLHTILFY 234
N+DI+D E A LGAFL E+ + +D+++ ++E++ + EEK + LHT+ FY
Sbjct: 138 NMDIKDTLEGAILGAFLICEICQCLQQSDDMEDSLEELLLQMEEKAGKSFLHTVCFY 194
>sp|Q6C195|SSU72_YARLI RNA polymerase II subunit A C-terminal domain phosphatase SSU72
OS=Yarrowia lipolytica (strain CLIB 122 / E 150)
GN=SSU72 PE=3 SV=1
Length = 193
Score = 150 bits (380), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 86/233 (36%), Positives = 129/233 (55%), Gaps = 42/233 (18%)
Query: 3 SNLKVAVVCSSNMNRSMEAHAYLSKKGVDVKSFGTGDKKPQQWESVVIFHCCDFCSELIP 62
+ LK+ VC+SN NRSMEAH L + G DV+S+GTG S V
Sbjct: 2 TELKMCTVCASNQNRSMEAHKVLKEAGFDVESYGTG--------SAV------------- 40
Query: 63 LFFHKVFVFQISVNLFFQSITGTAMDKPNVYDFHTTTYEDIYQDLMNKDKAFYTRNGLLH 122
+ G A DKPN+Y F T Y+DIY +L +D+ YT NGLL
Sbjct: 41 ------------------RLPGPAYDKPNIYAF-GTPYDDIYNELSAQDERLYTANGLLT 81
Query: 123 MLERNKRIKLKPEKFQESKDKFDIIITCEERVYDQVLEHFDNQMISLENTPVHLINIDIQ 182
ML+RN++IK PE++ E K+ FD++ TCEER ++ V + ++ L+ PVH+IN+DI+
Sbjct: 82 MLDRNRKIKTAPERWVEHKNVFDVVFTCEERCFEAVCDDLMDRGEKLQR-PVHVINVDIR 140
Query: 183 DNQEEATLGAFLASELMSMFIKCEDLDNEIDEIMQEFEEKCSR-PLLHTILFY 234
DN E++ +GA +L +DLD +I IM ++E+ + PL+H + ++
Sbjct: 141 DNHEDSVIGAQGILKLARSLADSKDLDAQIMGIMDSWQEQHPKLPLMHAVGYF 193
>sp|Q558Z3|SSU72_DICDI RNA polymerase II subunit A C-terminal domain phosphatase SSU72
OS=Dictyostelium discoideum GN=ssu72 PE=3 SV=1
Length = 214
Score = 147 bits (371), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 85/234 (36%), Positives = 132/234 (56%), Gaps = 43/234 (18%)
Query: 4 NLKVAVVCSSNMNRSMEAHAYLSKKGV-DVKSFGTGDKKPQQWESVVIFHCCDFCSELIP 62
N ++A+VC+SN NRS+EAH K G +++SFGT HC
Sbjct: 21 NKRIAMVCASNQNRSLEAHHLFVKNGFKNIRSFGTSA------------HC--------- 59
Query: 63 LFFHKVFVFQISVNLFFQSITGTAMDKPNVYDFHTTTYEDIYQDLMNKDKAFYTRNGLLH 122
+ G ++ +PN++ F T Y++IY L N+D+ Y RNGLL+
Sbjct: 60 ------------------KLPGPSIHQPNIFSF-GTPYQEIYTSLKNQDQELYIRNGLLN 100
Query: 123 MLERNKRIKLKPEKFQE-SKDKFDIIITCEERVYDQVLEHFDNQMISLEN-TPVHLINID 180
MLERN +KL PEK+QE + KF+I+ T ++RVYD V+E + +S PVH+IN+
Sbjct: 101 MLERNISVKLAPEKWQEEQQSKFEIVYTFDQRVYDAVIEDLLQRDVSSSLLQPVHIINLQ 160
Query: 181 IQDNQEEATLGAFLASELMSMFIKCEDLDNEIDEIMQEFEEKCSRPLLHTILFY 234
++D EEA GA A E+ S+ K + + ++D+I+++F ++ SR LHT++FY
Sbjct: 161 VKDTHEEAVGGAQHALEITSIIEKTLNWEEKLDQILEDFYKQTSRQFLHTLMFY 214
>sp|O42868|SSU72_SCHPO RNA polymerase II subunit A C-terminal domain phosphatase ssu72
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=ssu72 PE=1 SV=1
Length = 197
Score = 145 bits (366), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 86/234 (36%), Positives = 129/234 (55%), Gaps = 43/234 (18%)
Query: 3 SNLKVAVVCSSNMNRSMEAHAYLSKKGVDVKSFGTGDKKPQQWESVVIFHCCDFCSELIP 62
+NL+++V+C+SN NRSMEAH L G V SFGTG S V
Sbjct: 5 TNLQISVICASNQNRSMEAHNVLKNAGYQVDSFGTG--------SAV------------- 43
Query: 63 LFFHKVFVFQISVNLFFQSITGTAMDKPNVYDFHTTTYEDIYQDLMNKDKAFYTRNGLLH 122
+ G ++DKPN+Y F Y++IY++L +D YT NGLL
Sbjct: 44 ------------------RLPGPSIDKPNIYQF-GYPYDEIYKELEAQDSRLYTANGLLK 84
Query: 123 MLERNKRIKLKPEKFQESKDKFDIIITCEERVYDQVLEHFDNQMISLENTPVHLINIDIQ 182
ML+RN+RIK P ++Q+ ++I+ITCEER YD + E + +L N PV+LIN+DI+
Sbjct: 85 MLDRNRRIKRAPCRWQDQDSIYNIVITCEERCYDAICEDLYRRGETL-NRPVYLINVDIK 143
Query: 183 DNQEEATLGAFLASELMSMFIKCED-LDNEIDEIMQEFEEKCSR-PLLHTILFY 234
DN EEA++G +L++ + +D L+ IM +F+ + P+L+TI F+
Sbjct: 144 DNHEEASVGGKAILDLVNKLTEAQDKLEELFPSIMADFQSNHPKLPVLYTIHFF 197
>sp|P53538|SSU72_YEAST RNA polymerase II subunit A C-terminal domain phosphatase SSU72
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=SSU72 PE=1 SV=1
Length = 206
Score = 136 bits (342), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 91/241 (37%), Positives = 124/241 (51%), Gaps = 50/241 (20%)
Query: 3 SNLKVAVVCSSNMNRSMEAHAYLSKKGVDVKSFGTGDKKPQQWESVVIFHCCDFCSELIP 62
SNLK VC+SN NRSME+H L + G +V S+GTG S V
Sbjct: 7 SNLKFCTVCASNNNRSMESHKVLQEAGYNVSSYGTG--------SAV------------- 45
Query: 63 LFFHKVFVFQISVNLFFQSITGTAMDKPNVYDFHTTTYEDIYQDLMNKDKAFYTRNGLLH 122
+ G ++DKPNVY F T Y DIY DL+++ Y NGLL
Sbjct: 46 ------------------RLPGLSIDKPNVYSF-GTPYNDIYNDLLSQSADRYKSNGLLQ 86
Query: 123 MLERNKRIKLKPEKFQESKDKFDIIITCEERVYDQVLEHFDNQMISLENTPVHLINIDIQ 182
ML+RN+R+K PEK+QES FD + TCEER +D V E N+ L N VH+IN+DI+
Sbjct: 87 MLDRNRRLKKAPEKWQESTKVFDFVFTCEERCFDAVCEDLMNRGGKL-NKIVHVINVDIK 145
Query: 183 DNQEEATLGAFLASELMSMFI----KCEDLD----NEIDEIMQEFEEKCSR-PLLHTILF 233
D+ E A +G+ EL M +CE D + I +I+ E++ S+ P L+ +
Sbjct: 146 DDDENAKIGSKAILELADMLNDKIEQCEKDDIPFEDCIMDILTEWQSSHSQLPSLYAPSY 205
Query: 234 Y 234
Y
Sbjct: 206 Y 206
>sp|P0CR76|SSU72_CRYNJ RNA polymerase II subunit A C-terminal domain phosphatase SSU72
OS=Cryptococcus neoformans var. neoformans serotype D
(strain JEC21 / ATCC MYA-565) GN=SSU72 PE=3 SV=1
Length = 187
Score = 135 bits (340), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 71/154 (46%), Positives = 98/154 (63%), Gaps = 3/154 (1%)
Query: 82 ITGTAMDKPNVYDFHTTTYEDIYQDLMNKDKAFYTRNGLLHMLERNKRIKLKPEKFQESK 141
+ G A+DKPNVY F T Y+DIY+DL ++D YTRNG+L ML+RN+++K PEK+QE K
Sbjct: 36 LPGPAIDKPNVYRF-GTPYDDIYRDLESQDPQLYTRNGILPMLDRNRKVKKAPEKWQELK 94
Query: 142 DKF-DIIITCEERVYDQVLEHFDNQMISLENTPVHLINIDIQDNQEEATLGAFLASELMS 200
D++ITCEER YD V + + N P+H+INI+I+DN EEA + EL
Sbjct: 95 SVLADVVITCEERCYDAVCDDLLTRSGEY-NRPIHIINIEIKDNPEEAHIAGQSILELAR 153
Query: 201 MFIKCEDLDNEIDEIMQEFEEKCSRPLLHTILFY 234
+DLD++ID I+ +K LLHT+ FY
Sbjct: 154 AIEASDDLDSDIDAILNAHGDKHPHTLLHTVGFY 187
>sp|P0CR77|SSU72_CRYNB RNA polymerase II subunit A C-terminal domain phosphatase SSU72
OS=Cryptococcus neoformans var. neoformans serotype D
(strain B-3501A) GN=SSU72 PE=3 SV=1
Length = 187
Score = 135 bits (340), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 71/154 (46%), Positives = 98/154 (63%), Gaps = 3/154 (1%)
Query: 82 ITGTAMDKPNVYDFHTTTYEDIYQDLMNKDKAFYTRNGLLHMLERNKRIKLKPEKFQESK 141
+ G A+DKPNVY F T Y+DIY+DL ++D YTRNG+L ML+RN+++K PEK+QE K
Sbjct: 36 LPGPAIDKPNVYRF-GTPYDDIYRDLESQDPQLYTRNGILPMLDRNRKVKKAPEKWQELK 94
Query: 142 DKF-DIIITCEERVYDQVLEHFDNQMISLENTPVHLINIDIQDNQEEATLGAFLASELMS 200
D++ITCEER YD V + + N P+H+INI+I+DN EEA + EL
Sbjct: 95 SVLADVVITCEERCYDAVCDDLLTRSGEY-NRPIHIINIEIKDNPEEAHIAGQSILELAR 153
Query: 201 MFIKCEDLDNEIDEIMQEFEEKCSRPLLHTILFY 234
+DLD++ID I+ +K LLHT+ FY
Sbjct: 154 AIEASDDLDSDIDAILNAHGDKHPHTLLHTVGFY 187
>sp|Q75E60|SSU72_ASHGO RNA polymerase II subunit A C-terminal domain phosphatase SSU72
OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 /
FGSC 9923 / NRRL Y-1056) GN=SSU72 PE=3 SV=1
Length = 281
Score = 133 bits (334), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 87/245 (35%), Positives = 126/245 (51%), Gaps = 52/245 (21%)
Query: 1 MP--SNLKVAVVCSSNMNRSMEAHAYLSKKGVDVKSFGTGDKKPQQWESVVIFHCCDFCS 58
MP S L++ VC+SN NRSME+H L + G DV S+GTG S V
Sbjct: 78 MPNTSTLRLCTVCASNNNRSMESHRVLKEAGYDVSSYGTG--------SAV--------- 120
Query: 59 ELIPLFFHKVFVFQISVNLFFQSITGTAMDKPNVYDFHTTTYEDIYQDLMNKDKAFYTRN 118
+ G ++DKPNVY F T Y DIY DL+ + Y N
Sbjct: 121 ----------------------RLPGLSIDKPNVYPF-GTPYNDIYNDLLAQSAERYKSN 157
Query: 119 GLLHMLERNKRIKLKPEKFQESKDKFDIIITCEERVYDQVLEHFDNQMISLENTPVHLIN 178
GLL ML+RN+RIK PEK+ +S+ FD + TCEER +D V E N+ L N VH+IN
Sbjct: 158 GLLEMLDRNRRIKKAPEKWHDSQKVFDFVFTCEERCFDSVCEDLMNRGGQL-NKIVHVIN 216
Query: 179 IDIQDNQEEATLGAF----LASELMSMFIKCED----LDNEIDEIMQEFEEKCSR-PLLH 229
+DI+D+ E A +G L L S +C+ ++ I +++ ++++ + PLL+
Sbjct: 217 LDIRDDNENAKIGGRAMLELVKALNSKMQECDQQGVPFEDTIMDVVADWQQAHPQLPLLY 276
Query: 230 TILFY 234
+ +Y
Sbjct: 277 SPAYY 281
>sp|Q6CQ61|SSU72_KLULA RNA polymerase II subunit A C-terminal domain phosphatase SSU72
OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 /
DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=SSU72
PE=3 SV=1
Length = 207
Score = 133 bits (334), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 85/241 (35%), Positives = 124/241 (51%), Gaps = 50/241 (20%)
Query: 3 SNLKVAVVCSSNMNRSMEAHAYLSKKGVDVKSFGTGDKKPQQWESVVIFHCCDFCSELIP 62
S LK VC+SN NRSME+H L + G DV S+GTG S V
Sbjct: 8 SGLKFCTVCASNNNRSMESHRVLEEAGYDVSSYGTG--------SAV------------- 46
Query: 63 LFFHKVFVFQISVNLFFQSITGTAMDKPNVYDFHTTTYEDIYQDLMNKDKAFYTRNGLLH 122
+ G ++DKPNVY F T Y+DIY DL+++ + Y +NG+L
Sbjct: 47 ------------------RLPGLSIDKPNVYSF-GTPYDDIYNDLISQSEDRYKQNGVLE 87
Query: 123 MLERNKRIKLKPEKFQESKDKFDIIITCEERVYDQVLEHFDNQMISLENTPVHLINIDIQ 182
ML+RN+++K PEK+ + + FD + TCEER +D V E N+ L N H+INIDI+
Sbjct: 88 MLDRNRKLKKAPEKWHDGRKVFDFVFTCEERCFDSVCEDLMNRGGQL-NLIAHIINIDIK 146
Query: 183 DNQEEATLGA----FLASELMSMFIKCE----DLDNEIDEIMQEFEEKCSR-PLLHTILF 233
D+ E A +G LA L +CE ++ I ++ E++EK + PL ++ +
Sbjct: 147 DDNENAKIGGRAILRLADMLRDKVFECEKNGTQFEDFIMDVFTEWQEKYPKLPLTYSAAY 206
Query: 234 Y 234
Y
Sbjct: 207 Y 207
>sp|Q6FMU7|SSU72_CANGA RNA polymerase II subunit A C-terminal domain phosphatase SSU72
OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM
3761 / NBRC 0622 / NRRL Y-65) GN=SSU72 PE=3 SV=1
Length = 204
Score = 132 bits (332), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 79/198 (39%), Positives = 101/198 (51%), Gaps = 41/198 (20%)
Query: 5 LKVAVVCSSNMNRSMEAHAYLSKKGVDVKSFGTGDKKPQQWESVVIFHCCDFCSELIPLF 64
LK VC+SN NRSME+H L + G +V S+GTG S V
Sbjct: 7 LKFCTVCASNNNRSMESHRILQEAGYEVSSYGTG--------SAV--------------- 43
Query: 65 FHKVFVFQISVNLFFQSITGTAMDKPNVYDFHTTTYEDIYQDLMNKDKAFYTRNGLLHML 124
+ G + DKPNVY F T Y DIY DL+++ Y NGLL ML
Sbjct: 44 ----------------RLPGLSFDKPNVYPF-GTPYNDIYNDLLSQSAERYKANGLLQML 86
Query: 125 ERNKRIKLKPEKFQESKDKFDIIITCEERVYDQVLEHFDNQMISLENTPVHLINIDIQDN 184
+RN+R+K PEK+QE FD + TCEER +D V E N+ L N VH+INIDI+D+
Sbjct: 87 DRNRRLKKAPEKWQEGTKTFDFVFTCEERCFDAVCEDLMNRGGRL-NKIVHVINIDIRDD 145
Query: 185 QEEATLGAFLASELMSMF 202
E A +G EL +M
Sbjct: 146 NENAKIGGRAILELANML 163
>sp|Q2UPU5|SSU72_ASPOR RNA polymerase II subunit A C-terminal domain phosphatase ssu72
OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40)
GN=ssu72 PE=3 SV=1
Length = 262
Score = 127 bits (318), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 87/251 (34%), Positives = 122/251 (48%), Gaps = 73/251 (29%)
Query: 5 LKVAVVCSSNMNRSMEAHAYLS--KKGVDVKSFGTGDKKPQQWESVVIFHCCDFCSELIP 62
L+ VC+SN NRSMEAH LS V SFGTG S+V
Sbjct: 28 LRFCTVCASNQNRSMEAHLRLSTAPSPFPVISFGTG--------SLV------------- 66
Query: 63 LFFHKVFVFQISVNLFFQSITGTAMDKPNVYDFHTTTYEDIYQDLMNKDKAFYTRNGLLH 122
+ G ++ +PNVY+F+TT+Y +Y++L +KD+ Y NGLL+
Sbjct: 67 ------------------RLPGPSITQPNVYNFNTTSYSQMYEELYSKDERLYRNNGLLN 108
Query: 123 MLERNKRIKLKPEKFQE------------SKDK---------FDIIITCEERVYDQVLEH 161
MLERN+ +K PE+FQ+ DK D+IITCEER +D V++
Sbjct: 109 MLERNRNLKWGPERFQDWVPGMPRVDHVAKGDKGALGTEGGVVDVIITCEERCWDAVVDD 168
Query: 162 FDNQMISLENTPVHLINIDIQDNQEEATLGAF----LASELMSMFIK------CEDLDNE 211
N+ SL N PVH+ N+DI+DN EEA +G LA+ L ++ E +N
Sbjct: 169 LMNKG-SLLNRPVHVFNVDIKDNHEEALVGGKAILELANRLNEAAVQERKANNSEGWENG 227
Query: 212 IDEIMQEFEEK 222
E + F+EK
Sbjct: 228 TGEARRSFDEK 238
>sp|Q7SFY0|SSU72_NEUCR RNA polymerase II subunit A C-terminal domain phosphatase ssu-72
OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A /
CBS 708.71 / DSM 1257 / FGSC 987) GN=ssu-72 PE=3 SV=1
Length = 266
Score = 125 bits (314), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 77/207 (37%), Positives = 105/207 (50%), Gaps = 59/207 (28%)
Query: 5 LKVAVVCSSNMNRSMEAHAYLSKKGVDVKSFGTGDKKPQQWESVVIFHCCDFCSELIPLF 64
LK VC+SN NRSME H LS V SFGTG S+V
Sbjct: 36 LKFCTVCASNQNRSMEGHLRLSLANYPVISFGTG--------SLV--------------- 72
Query: 65 FHKVFVFQISVNLFFQSITGTAMDKPNVYDFHTTTYEDIYQDLMNKDKAFYTRNGLLHML 124
+ G ++ +PNVY F+ T+Y+ IY++L KD Y NGLL+ML
Sbjct: 73 ----------------RLPGPSITQPNVYKFNETSYDSIYRELEAKDPRLYRANGLLNML 116
Query: 125 ERNKRIKLKPEKFQESK----------DK---------FDIIITCEERVYDQVLEHFDNQ 165
RN+++K PE++Q+ + DK D++ITCEER +D V+E N+
Sbjct: 117 GRNRQVKWGPERWQDWQIGMPRTKHKDDKGADGMEGGVADVVITCEERCWDAVIEDLLNR 176
Query: 166 MISLENTPVHLINIDIQDNQEEATLGA 192
L N PVH+INIDI+DN EEA++G
Sbjct: 177 GSPL-NRPVHVINIDIKDNHEEASVGG 202
>sp|Q4WHY5|SSU72_ASPFU RNA polymerase II subunit A C-terminal domain phosphatase ssu72
OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 /
CBS 101355 / FGSC A1100) GN=ssu72 PE=3 SV=1
Length = 287
Score = 124 bits (311), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 84/251 (33%), Positives = 118/251 (47%), Gaps = 73/251 (29%)
Query: 5 LKVAVVCSSNMNRSMEAHAYLS--KKGVDVKSFGTGDKKPQQWESVVIFHCCDFCSELIP 62
LK VC+SN NRSMEAH LS V SFGTG S+V
Sbjct: 53 LKFCTVCASNQNRSMEAHLRLSTAPSPFPVISFGTG--------SLV------------- 91
Query: 63 LFFHKVFVFQISVNLFFQSITGTAMDKPNVYDFHTTTYEDIYQDLMNKDKAFYTRNGLLH 122
+ G ++ +PNVY+F+TT+Y +Y +L+ KD+ Y NGLL+
Sbjct: 92 ------------------RLPGPSITQPNVYNFNTTSYSQMYDELLAKDERLYRNNGLLN 133
Query: 123 MLERNKRIKLKPEKFQE------------SKDK---------FDIIITCEERVYDQVLEH 161
ML+RN+ +K PE+FQ+ DK D+IITCEER +D V++
Sbjct: 134 MLDRNRNLKWGPERFQDWVPGMPRVDHVSKGDKGALGTEGGTVDVIITCEERCWDAVVDD 193
Query: 162 FDNQMISLENTPVHLINIDIQDNQEEATLGAFLASELMSMFI----------KCEDLDNE 211
N+ +L N PVH+ N+DI+DN EEA +G EL + E +N
Sbjct: 194 LMNKGAAL-NRPVHVFNVDIRDNHEEALVGGKAILELATRLNDAATQERKIHGAEGWENG 252
Query: 212 IDEIMQEFEEK 222
E + F+E+
Sbjct: 253 NGEARRSFDER 263
>sp|Q2HFZ9|SSU72_CHAGB RNA polymerase II subunit A C-terminal domain phosphatase SSU72
OS=Chaetomium globosum (strain ATCC 6205 / CBS 148.51 /
DSM 1962 / NBRC 6347 / NRRL 1970) GN=SSU72 PE=3 SV=1
Length = 257
Score = 122 bits (305), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 85/271 (31%), Positives = 125/271 (46%), Gaps = 81/271 (29%)
Query: 5 LKVAVVCSSNMNRSMEAHAYLSKKGVDVKSFGTGDKKPQQWESVVIFHCCDFCSELIPLF 64
LK VC+SN NRSME H L++ V SFGTG S+V
Sbjct: 27 LKFCTVCASNQNRSMEGHLRLAQANYPVISFGTG--------SLV--------------- 63
Query: 65 FHKVFVFQISVNLFFQSITGTAMDKPNVYDFHTTTYEDIYQDLMNKDKAFYTRNGLLHML 124
+ G + +PNVY F+ T+Y+ IY++L KD Y NGLL+ML
Sbjct: 64 ----------------RLPGPTITQPNVYKFNETSYDSIYRELEAKDPRLYRANGLLNML 107
Query: 125 ERNKRIKLKPEKFQE----------SKDKF---------DIIITCEERVYDQVLEHFDNQ 165
RN+ IK PE++Q+ KD+ DI+ITCEER +D V++ N+
Sbjct: 108 GRNRVIKWGPERWQDWQVGMPRVKHEKDQGSIGMEAGVPDIVITCEERCWDAVVDDLLNR 167
Query: 166 MISLENTPVHLINIDIQDNQEEATLGAF----LASELMSMFIKCED-------------- 207
L N PVH+INIDI+DN ++A++G LA L ++ D
Sbjct: 168 GSPL-NRPVHVINIDIKDNHQDASIGGGAMVDLADSLNRAAMEERDKVGAAVFDAGGAAS 226
Query: 208 ---LDNEIDEIMQEFEEKCSR-PLLHTILFY 234
D + E++ E++E+ P T+ ++
Sbjct: 227 RASFDERVPEVLGEWQERWPGLPSTWTLSWF 257
>sp|Q6BYP7|SSU72_DEBHA RNA polymerase II subunit A C-terminal domain phosphatase SSU72
OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 /
JCM 1990 / NBRC 0083 / IGC 2968) GN=SSU72 PE=3 SV=2
Length = 223
Score = 122 bits (305), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 87/262 (33%), Positives = 129/262 (49%), Gaps = 74/262 (28%)
Query: 4 NLKVAVVCSSNMNRSMEAHAYLSKKGVDVKSFGTGDKKPQQWESVVIFHCCDFCSELIPL 63
+LK+ VC++N NRSME+H L G +V+SFGTG S V
Sbjct: 5 SLKICTVCAANNNRSMESHKQLKDAGYNVRSFGTG--------SAV-------------- 42
Query: 64 FFHKVFVFQISVNLFFQSITGTAMDKPNVYDFHTTTYEDIYQDLMNKD-KAFYTRNGLLH 122
+ G ++DKPNVY+F T Y+DIY+DL +++ Y NGL+
Sbjct: 43 -----------------RLPGPSVDKPNVYEF-GTPYDDIYRDLTSQEYHKMYESNGLIR 84
Query: 123 MLERNKRIKLKPEKFQE--SKDKFDIIITCEERVYDQVLEHFDNQMISLENT-------- 172
M+ RN+ IK PEK+ S KFD++ITCEER +D VL D+ M+ L N
Sbjct: 85 MINRNRHIKRAPEKWHNNASAGKFDLVITCEERCFDLVL---DDLMVRLVNKDQADTEIK 141
Query: 173 -PVHLINIDIQDNQEEATLGAFLASELMSMFIKCE----------DLDNEIDEIMQE--- 218
VH+INIDI+D+ E A +G +L++M + D D+E D I+++
Sbjct: 142 QAVHIINIDIKDDYENAVIGGKGILKLVNMIHEFRNTNKQRRLDHDFDDESDTILEDQMM 201
Query: 219 ------FEEKCSRPLLHTILFY 234
+E P L+++ +Y
Sbjct: 202 KLLAKWQQEHTHLPTLYSVAYY 223
>sp|Q4IPC8|SSU72_GIBZE RNA polymerase II subunit A C-terminal domain phosphatase SSU72
OS=Gibberella zeae (strain PH-1 / ATCC MYA-4620 / FGSC
9075 / NRRL 31084) GN=SSU72 PE=3 SV=1
Length = 255
Score = 121 bits (303), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 73/207 (35%), Positives = 106/207 (51%), Gaps = 59/207 (28%)
Query: 5 LKVAVVCSSNMNRSMEAHAYLSKKGVDVKSFGTGDKKPQQWESVVIFHCCDFCSELIPLF 64
LK VC+SN NRSMEAH LS+ V SFGTG S+V
Sbjct: 25 LKFCTVCASNNNRSMEAHLRLSQADYPVISFGTG--------SLV--------------- 61
Query: 65 FHKVFVFQISVNLFFQSITGTAMDKPNVYDFHTTTYEDIYQDLMNKDKAFYTRNGLLHML 124
+ G + +PNVY F+ T+Y+ ++++L +KD Y NG+L+ML
Sbjct: 62 ----------------RLPGPTITQPNVYHFNKTSYDSMFKELESKDARLYKNNGILNML 105
Query: 125 ERNKRIKLKPEKFQE----------SKDK---------FDIIITCEERVYDQVLEHFDNQ 165
RN+ +K PE++Q+ +KD+ DI+ITCEER +D V++ N+
Sbjct: 106 NRNRGVKWGPERWQDWQVGVPRLQHAKDRGSEGTEGGLVDIVITCEERCWDAVVDDLMNR 165
Query: 166 MISLENTPVHLINIDIQDNQEEATLGA 192
L N PVH+IN++I+DN EEA +G
Sbjct: 166 GSPL-NRPVHVINVEIKDNHEEAAVGG 191
>sp|Q2JPU2|RS15_SYNJB 30S ribosomal protein S15 OS=Synechococcus sp. (strain
JA-2-3B'a(2-13)) GN=rpsO PE=3 SV=1
Length = 91
Score = 32.7 bits (73), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 5/57 (8%)
Query: 97 TTTYEDIYQDLMNKDKAFYTRNGLLHMLERNKRI-----KLKPEKFQESKDKFDIII 148
T+ + Q L K F +R GLL M+ R KR+ K P++F+E ++ +I +
Sbjct: 33 TSRINQLSQHLQRNPKDFNSRRGLLMMIGRRKRLLNYIAKHSPDRFRELAERLNIRV 89
>sp|Q2JR73|RS15_SYNJA 30S ribosomal protein S15 OS=Synechococcus sp. (strain JA-3-3Ab)
GN=rpsO PE=3 SV=1
Length = 91
Score = 32.0 bits (71), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 5/57 (8%)
Query: 97 TTTYEDIYQDLMNKDKAFYTRNGLLHMLERNKRI-----KLKPEKFQESKDKFDIII 148
T+ + Q L K F +R GL+ M+ R KR+ K P++F+E ++ +I +
Sbjct: 33 TSRINQLSQHLQKNPKDFNSRRGLMMMIGRRKRLLNYIAKRSPDRFRELAERLNIRV 89
>sp|Q80UV9|TAF1_MOUSE Transcription initiation factor TFIID subunit 1 OS=Mus musculus
GN=Taf1 PE=2 SV=2
Length = 1891
Score = 31.2 bits (69), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 24/107 (22%), Positives = 44/107 (41%), Gaps = 5/107 (4%)
Query: 42 PQQWESVVIFHCCDFCSELIPLFFHKVFVFQISVNLFFQSITGTAMDKPNVYDFHTTTYE 101
P++ V CD+ + + ++++ +SI D PN Y FHT
Sbjct: 1373 PKKKRRVGTTVHCDYLNRPHKSIHRRRTDPMVTLSSILESIINDMRDLPNTYPFHTPVNA 1432
Query: 102 DIYQDLMNKDKAFYTRNGLLHMLERNKRIKLKPEKFQESKDKFDIII 148
+ +D TR L L N R +L P + +E ++ ++I+
Sbjct: 1433 KVVKDYYK----IITRPMDLQTLRENVRKRLYPSR-EEFREHLELIV 1474
>sp|Q60544|TAF1_MESAU Transcription initiation factor TFIID subunit 1 OS=Mesocricetus
auratus GN=TAF1 PE=2 SV=1
Length = 1865
Score = 31.2 bits (69), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 24/107 (22%), Positives = 44/107 (41%), Gaps = 5/107 (4%)
Query: 42 PQQWESVVIFHCCDFCSELIPLFFHKVFVFQISVNLFFQSITGTAMDKPNVYDFHTTTYE 101
P++ V CD+ + + ++++ +SI D PN Y FHT
Sbjct: 1347 PKKKRRVGTTVHCDYLNRPHKSIHRRRTDPMVTLSSILESIINDMRDLPNTYPFHTPVNA 1406
Query: 102 DIYQDLMNKDKAFYTRNGLLHMLERNKRIKLKPEKFQESKDKFDIII 148
+ +D TR L L N R +L P + +E ++ ++I+
Sbjct: 1407 KVVKDYYK----IITRPMDLQTLRENVRKRLYPSR-EEFREHLELIV 1448
>sp|P21675|TAF1_HUMAN Transcription initiation factor TFIID subunit 1 OS=Homo sapiens
GN=TAF1 PE=1 SV=2
Length = 1872
Score = 31.2 bits (69), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 24/107 (22%), Positives = 44/107 (41%), Gaps = 5/107 (4%)
Query: 42 PQQWESVVIFHCCDFCSELIPLFFHKVFVFQISVNLFFQSITGTAMDKPNVYDFHTTTYE 101
P++ V CD+ + + ++++ +SI D PN Y FHT
Sbjct: 1352 PKKKRRVGTTVHCDYLNRPHKSIHRRRTDPMVTLSSILESIINDMRDLPNTYPFHTPVNA 1411
Query: 102 DIYQDLMNKDKAFYTRNGLLHMLERNKRIKLKPEKFQESKDKFDIII 148
+ +D TR L L N R +L P + +E ++ ++I+
Sbjct: 1412 KVVKDYYK----IITRPMDLQTLRENVRKRLYPSR-EEFREHLELIV 1453
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.137 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 86,522,268
Number of Sequences: 539616
Number of extensions: 3570075
Number of successful extensions: 10396
Number of sequences better than 100.0: 44
Number of HSP's better than 100.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 10289
Number of HSP's gapped (non-prelim): 72
length of query: 234
length of database: 191,569,459
effective HSP length: 114
effective length of query: 120
effective length of database: 130,053,235
effective search space: 15606388200
effective search space used: 15606388200
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 59 (27.3 bits)