Query psy9211
Match_columns 226
No_of_seqs 131 out of 246
Neff 5.9
Searched_HMMs 29240
Date Fri Aug 16 21:46:07 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9211.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/9211hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4b4t_V 26S proteasome regulato 100.0 8E-30 2.7E-34 229.7 12.0 200 1-207 91-305 (306)
2 2o95_A 26S proteasome non-ATPa 99.7 3E-17 1E-21 137.2 5.2 99 1-117 79-177 (187)
3 2znr_A AMSH-like protease; met 99.5 1.6E-14 5.6E-19 120.6 6.9 72 8-84 78-153 (178)
4 4e0q_A COP9 signalosome comple 99.5 5E-15 1.7E-19 119.5 2.3 64 1-67 75-138 (141)
5 3rzv_A STAM-binding protein; u 99.4 1.7E-13 5.9E-18 117.5 8.8 70 10-84 113-186 (211)
6 4b4t_U RPN8, 26S proteasome re 99.0 1.2E-10 4.1E-15 105.8 4.4 92 1-110 76-168 (338)
7 2kcq_A MOV34/MPN/PAD-1 family; 98.3 5E-07 1.7E-11 72.8 4.6 51 11-69 75-127 (153)
8 2kks_A Uncharacterized protein 98.2 3.3E-06 1.1E-10 67.4 6.5 53 10-69 72-125 (146)
9 2og4_A PRE-mRNA-splicing facto 97.7 9.5E-05 3.3E-09 64.7 8.7 89 11-104 109-199 (254)
10 2p8r_A PRP8, PRE-mRNA-splicing 97.7 0.00018 6E-09 63.6 10.1 89 10-104 107-201 (273)
11 1oi0_A AF2198, hypothetical pr 97.3 0.00052 1.8E-08 53.0 6.9 50 10-67 61-111 (124)
12 3sbg_A PRE-mRNA-splicing facto 95.1 0.062 2.1E-06 51.2 8.3 90 10-104 419-510 (565)
13 2rh2_A Dihydrofolate reductase 28.3 18 0.00063 23.9 0.9 9 13-21 25-33 (62)
14 3nqi_A Putative lipoprotein; s 26.7 51 0.0018 28.3 3.6 38 39-77 143-205 (246)
No 1
>4b4t_V 26S proteasome regulatory subunit RPN11; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.96 E-value=8e-30 Score=229.65 Aligned_cols=200 Identities=17% Similarity=0.252 Sum_probs=126.9
Q ss_pred ChhHHhhhCCCCceeEEEEeec-CCCccCHHHHHHHHHHhHhcCCeEEEEEeCCccCCceeeEEEEecCHHHHHHhhc-C
Q psy9211 1 MMRRLRRVNVDHYHVGWYQSSD-VANFISLPLIESQFHYQISIEEAVVLIYDTQKTSRGFLTLKAYRLTPQAIQMYKE-G 78 (226)
Q Consensus 1 Mm~~Lr~vn~D~~~VGwYqS~~-~G~f~s~~~Ietq~~yQ~~~~~~V~lV~Dp~~s~~G~lslkAfRLs~~~~~~~ke-~ 78 (226)
|++++|++|+|.++|||||||| +|||+|..+|+||+.||...+++|+|||||++|.+|+++|+|||++|..+....+ +
T Consensus 91 m~~~~~~v~~~~~vVGWYhShP~~~~~~S~~Di~tq~~yQ~~~~~~V~lV~Dp~~t~~G~~~i~Afr~~~~~~~~~~~~~ 170 (306)
T 4b4t_V 91 MMDMLKQTGRDQMVVGWYHSHPGFGCWLSSVDVNTQKSFEQLNSRAVAVVVDPIQSVKGKVVIDAFRLIDTGALINNLEP 170 (306)
T ss_dssp HHHHHHHHSCCCCCSEEEEECCSSSCCCCHHHHHHHHHHHHHCSSCEEEEECSSSSSSCSSCEEEEECCHHHHHHCCCCC
T ss_pred HHHHHHHhCCCcceeeEEecCCCCCCcCCHHHHHHHHHHHhcCCCcEEEEECCCcCCCCceeeeEEEecCccccccccCc
Confidence 7899999999999999999998 9999999999999999999999999999999999999999999999998766543 3
Q ss_pred CCCHH--------HHhhcCCCCCCceEEeeeEEeccHHHHHHHhcccCCCCCCCCCcccccchHHHHHHHHHHHHHHHHH
Q psy9211 79 EFTPE--------ALRAIKVGFENLLLEVPVKIRNSPLTNVLLSEVDGLVSPAEGNNFLDLGTAFQQQVVRQAQDKHRYQ 150 (226)
Q Consensus 79 ~~t~~--------~l~~~~lt~~~i~~EiPI~i~ns~L~~~~L~~L~~~~~~~~~~~~L~l~~~yqR~l~req~~~~q~~ 150 (226)
+.++. .+...+.++.++|+++||.+++|.|.+.+|..|.++.+... |.+.. |.....+...++..+.
T Consensus 171 ~~~~s~~~~~~~~~~~~~~~~~~~~yy~l~i~~~ks~le~~~L~~L~~~~w~~~----l~~~~-~~~~~~~~~~~i~~m~ 245 (306)
T 4b4t_V 171 RQTTSNTGLLNKANIQALIHGLNRHYYSLNIDYHKTAKETKMLMNLHKEQWQSG----LKMYD-YEEKEESNLAATKSMV 245 (306)
T ss_dssp SCC----------------------CEEECSCCCCCSSCTHHHHHHHHC---------------CHHHHHHHHHHHHHHS
T ss_pred ccccccccccCchhhhhhhccccceEEEeeeEEEeCcHHHHHHHHHHhcccccc----cccCc-HHHHHHHHHHHHHHHH
Confidence 33333 23344566788999999999999999999999976544321 11111 1111111111121111
Q ss_pred HHHHHHHHHHHhCCCCCCChhhhh-hhcCCCCCCCCh----HHHHHHHHHHHHHHHHHHHhH
Q psy9211 151 AKRMQENQARAAKDEPPLPEEDLN-KIFRPIPVPPRL----SPMLMAAQVSAYADHISQFSS 207 (226)
Q Consensus 151 ~kR~~EN~~R~~~ge~plpeed~~-~~fK~~~~PsrL----~~lL~s~qi~~~c~~i~~~~~ 207 (226)
+.- ++-.+.-.++..++++++. +......|+..| +.|+.++-++.+|-.|+..+.
T Consensus 246 ~~~--~~y~k~v~~e~~~~~~~l~~~~vgk~dp~~~l~~~~~~l~~~ni~~~l~~~~~~~~~ 305 (306)
T 4b4t_V 246 KIA--EQYSKRIEEEKELTEEELKTRYVGRQDPKKHLSETADETLENNIVSVLTAGVNSVAI 305 (306)
T ss_dssp SCH--HHHHHHHHHHHHHHHHHHHHTCSCSSCCSSSSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHH--HHHHHHHHccccCCHHHHHhhccCccChHHHHHHHHHHHHHHHHHHHHHHhhhhhhc
Confidence 100 0000111111112334432 222334444444 778999999999999988753
No 2
>2o95_A 26S proteasome non-ATPase regulatory subunit 7; PSMD7, MOV34, JAB1/MPN, metal-free dimer, UN function; HET: SO4 12P ETE PG4 PGE; 1.95A {Homo sapiens} PDB: 2o96_A
Probab=99.67 E-value=3e-17 Score=137.15 Aligned_cols=99 Identities=18% Similarity=0.195 Sum_probs=78.8
Q ss_pred ChhHHhhhCCCCceeEEEEeecCCCccCHHHHHHHHHHhHhcCCeEEEEEeCCccCCceeeEEEEecCHHHHHHhhcCCC
Q psy9211 1 MMRRLRRVNVDHYHVGWYQSSDVANFISLPLIESQFHYQISIEEAVVLIYDTQKTSRGFLTLKAYRLTPQAIQMYKEGEF 80 (226)
Q Consensus 1 Mm~~Lr~vn~D~~~VGwYqS~~~G~f~s~~~Ietq~~yQ~~~~~~V~lV~Dp~~s~~G~lslkAfRLs~~~~~~~ke~~~ 80 (226)
|++++|+||.+.++||||||++.++. .++..+..||..++++|+||+||.++.+| +.++|||+++.+.+
T Consensus 79 m~~~~~~v~~~~~iVGWY~s~~~~s~---~d~~i~~~~~~~~~~~v~Livd~~~~~~~-l~i~ay~~~~~~~~------- 147 (187)
T 2o95_A 79 MYGMFKKVNARERIVGWYHTGPKLHK---NDIAINELMKRYCPNSVLVIIDVKPKDLG-LPTEAYISVEEVHD------- 147 (187)
T ss_dssp HHHHHHTTSSSCEEEEEEECCSSCCT---THHHHHHHHTTTCTTCEEEEECCCTTC-C-CSEEEEEEEEECC--------
T ss_pred HHHHHHHhCCCCCEEEEEcCCCcCCc---ccHHHHHHHHhcCCCCEEEEECCCCCCCC-cCeEEEEEechhcC-------
Confidence 67899999999999999999997755 34556667888889999999999988766 99999999876432
Q ss_pred CHHHHhhcCCCCCCceEEeeeEEeccHHHHHHHhccc
Q psy9211 81 TPEALRAIKVGFENLLLEVPVKIRNSPLTNVLLSEVD 117 (226)
Q Consensus 81 t~~~l~~~~lt~~~i~~EiPI~i~ns~L~~~~L~~L~ 117 (226)
.+.++.++|.|||++|.++.-+..-+.-+.
T Consensus 148 -------~~~~~~~~F~~ip~~I~~~eaE~i~v~~l~ 177 (187)
T 2o95_A 148 -------DGTPTSKTFEHVTSEIGAEEAEEVGVEHLL 177 (187)
T ss_dssp ----------CCEEEEEEEEEEECCCHHHHHHHHHHH
T ss_pred -------CCCcccCEEEEeeEEEecCcHHHHHHHHHH
Confidence 245678899999999999987666555543
No 3
>2znr_A AMSH-like protease; metal binding protein, alternative splicing, hydrolase, metal-binding, metalloprotease, UBL conjugation pathway, zinc; 1.20A {Homo sapiens} PDB: 2znv_A
Probab=99.51 E-value=1.6e-14 Score=120.62 Aligned_cols=72 Identities=21% Similarity=0.418 Sum_probs=63.9
Q ss_pred hCCCCceeEEEEeec-CCCccCHHHHHHHHHHhHhcCCeEEEEEeCCccCCceeeEEEEecCHHHHHH---hhcCCCCHH
Q psy9211 8 VNVDHYHVGWYQSSD-VANFISLPLIESQFHYQISIEEAVVLIYDTQKTSRGFLTLKAYRLTPQAIQM---YKEGEFTPE 83 (226)
Q Consensus 8 vn~D~~~VGwYqS~~-~G~f~s~~~Ietq~~yQ~~~~~~V~lV~Dp~~s~~G~lslkAfRLs~~~~~~---~ke~~~t~~ 83 (226)
.+.|..+|||||||| .++|.|..+|++|.+||...+++|+||+||.++ .++||||++.-++. ++++.|.+.
T Consensus 78 ~~~~l~~vGwyHSHP~~~~~pS~~Dv~tq~~yq~~~~~~v~iIvsp~~~-----~~~afrl~~~g~~~~~~~~~~~f~p~ 152 (178)
T 2znr_A 78 DQHDLLTLGWIHTHPTQTAFLSSVDLHTHCSYQLMLPEAIAIVCSPKHK-----DTGIFRLTNAGMLEVSACKKKGFHPH 152 (178)
T ss_dssp HHHTCEEEEEEEECSSSCSCCCHHHHHHHHHHHHHCTTCEEEEEEGGGT-----EEEEEEECHHHHHHHHHCCCCSSCCC
T ss_pred HhCCCEEEEEEeCCCCCCCCCCHHHHHHHHHHHhhcCCEEEEEEcCCCC-----cceEEEEECCcEeeecccCCCCcccC
Confidence 357889999999998 999999999999999999999999999999974 27999999988777 777778774
Q ss_pred H
Q psy9211 84 A 84 (226)
Q Consensus 84 ~ 84 (226)
.
T Consensus 153 ~ 153 (178)
T 2znr_A 153 T 153 (178)
T ss_dssp C
T ss_pred C
Confidence 3
No 4
>4e0q_A COP9 signalosome complex subunit 6; MPN (MPR1P and PAD1P N-terminal) domain, unknown function; 2.50A {Drosophila melanogaster}
Probab=99.49 E-value=5e-15 Score=119.52 Aligned_cols=64 Identities=22% Similarity=0.267 Sum_probs=54.2
Q ss_pred ChhHHhhhCCCCceeEEEEeecCCCccCHHHHHHHHHHhHhcCCeEEEEEeCCccCCceeeEEEEec
Q psy9211 1 MMRRLRRVNVDHYHVGWYQSSDVANFISLPLIESQFHYQISIEEAVVLIYDTQKTSRGFLTLKAYRL 67 (226)
Q Consensus 1 Mm~~Lr~vn~D~~~VGwYqS~~~G~f~s~~~Ietq~~yQ~~~~~~V~lV~Dp~~s~~G~lslkAfRL 67 (226)
|++++|+||.|+++||||||++ .++..+++.+..|++.++++|+|++||.++.+|+|+++||+-
T Consensus 75 m~~~~k~v~~~e~iVGWY~s~~---~~~~~d~~i~~~~~~~~~~pV~L~~Dp~~~~~g~Lp~~ay~s 138 (141)
T 4e0q_A 75 KEQQYKQVFSDLDFIGWYTTGD---NPTADDIKIQRQIAAINECPIMLQLNPLSRSVDHLPLKLFES 138 (141)
T ss_dssp HHHHHHHHSTTCEEEEEEEEEC----------CHHHHHHHTTCCCEEEEESCSCCCCTTHHHHHHCC
T ss_pred HHHHHHHhCCCccEEEEEeCCC---CCCcchHHHHHHHHHHCCCCEEEEECCCccCCCeEEEEEEEE
Confidence 7899999999999999999986 588899999999999999999999999999999999999974
No 5
>3rzv_A STAM-binding protein; ubiquitin hydrolase, endosome-associated deubiquitinat enzyme, hydrolase; 1.67A {Homo sapiens} PDB: 3rzu_A
Probab=99.45 E-value=1.7e-13 Score=117.46 Aligned_cols=70 Identities=17% Similarity=0.405 Sum_probs=62.6
Q ss_pred CCCceeEEEEeec-CCCccCHHHHHHHHHHhHhcCCeEEEEEeCCccCCceeeEEEEecCHHHHH---HhhcCCCCHHH
Q psy9211 10 VDHYHVGWYQSSD-VANFISLPLIESQFHYQISIEEAVVLIYDTQKTSRGFLTLKAYRLTPQAIQ---MYKEGEFTPEA 84 (226)
Q Consensus 10 ~D~~~VGwYqS~~-~G~f~s~~~Ietq~~yQ~~~~~~V~lV~Dp~~s~~G~lslkAfRLs~~~~~---~~ke~~~t~~~ 84 (226)
.|..+|||||||+ .++|.|..+|.||.+||...+++|+||+||..+ +++||||+++-|+ .+++..|.+..
T Consensus 113 ~~l~~vGWyHSHP~~~~~pS~~Dl~tq~~~q~~~~~~I~IVvsP~~~-----~lgaFrLtp~G~~~~~~c~~~~fhph~ 186 (211)
T 3rzv_A 113 QGLITLGWIHTHPTQTAFLSSVDLHTHCSYQMMLPESVAIVCSPKFQ-----ETGFFKLTDHGLEEISSCRQKGFHPHS 186 (211)
T ss_dssp HTCEEEEEEEECTTSCSCCCHHHHHHHHHHHHHCTTCEEEEEETTTT-----EEEEEEECHHHHHHHHHCCCCSSCCCC
T ss_pred CCCEEEEEEeCCCCCCCCCCHHHHHHHHHHHhcCCCeEEEEEcCCCC-----eeeEEEeccchhhhhhccccCCcccCC
Confidence 5889999999998 999999999999999999999999999999843 7999999997776 77777787743
No 6
>4b4t_U RPN8, 26S proteasome regulatory subunit RPN8; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.03 E-value=1.2e-10 Score=105.78 Aligned_cols=92 Identities=18% Similarity=0.264 Sum_probs=70.1
Q ss_pred ChhHHhhhCCCCceeEEEEeecCCCccCHHHHHHHHHHhHhcC-CeEEEEEeCCccCCceeeEEEEecCHHHHHHhhcCC
Q psy9211 1 MMRRLRRVNVDHYHVGWYQSSDVANFISLPLIESQFHYQISIE-EAVVLIYDTQKTSRGFLTLKAYRLTPQAIQMYKEGE 79 (226)
Q Consensus 1 Mm~~Lr~vn~D~~~VGwYqS~~~G~f~s~~~Ietq~~yQ~~~~-~~V~lV~Dp~~s~~G~lslkAfRLs~~~~~~~ke~~ 79 (226)
|++++++||.++.+||||++. +-++..++..+-.|....+ ..|+|++|+. ...|.+.++||+..+...
T Consensus 76 m~~~~kkV~~~e~iVGWY~tg---~~~~~~d~~Ih~~~~~~~~~~pi~l~~d~~-~~~~~lpi~aY~s~~~~~------- 144 (338)
T 4b4t_U 76 MNEMCKKINAKEKLIGWYHSG---PKLRASDLKINELFKKYTQNNPLLLIVDVK-QQGVGLPTDAYVAIEQVK------- 144 (338)
T ss_dssp HHHHHHHHCCSCEEEEEEECC---SSCCSTHHHHHHHHGGGCCSCCCEEEECSC-CCSSSCSEEEEEEEEECS-------
T ss_pred HHHHHhhcCccCCEEEEEecC---CCCCccHHHHHHHHHhccCCCcEEEEecCC-CCCCCcceEEEEeehhcc-------
Confidence 789999999999999999984 5577777887888888775 5677777775 557889999998655321
Q ss_pred CCHHHHhhcCCCCCCceEEeeeEEeccHHHH
Q psy9211 80 FTPEALRAIKVGFENLLLEVPVKIRNSPLTN 110 (226)
Q Consensus 80 ~t~~~l~~~~lt~~~i~~EiPI~i~ns~L~~ 110 (226)
..+-....+|.+||..|....-+.
T Consensus 145 -------~~~~~~~~~F~~lp~~i~~~eaE~ 168 (338)
T 4b4t_U 145 -------DDGTSTEKTFLHLPCTIEAEEAEE 168 (338)
T ss_dssp -------SCSTTCEEEEEEECEEECSCHHHH
T ss_pred -------CCCcccccEEEEeeeEeecCcHHH
Confidence 122334568999999998886544
No 7
>2kcq_A MOV34/MPN/PAD-1 family; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Salinibacter ruber dsm 13855}
Probab=98.30 E-value=5e-07 Score=72.80 Aligned_cols=51 Identities=24% Similarity=0.208 Sum_probs=41.1
Q ss_pred CCceeEEEEeec-CCCccCHHHHHHHHHHhHhcCCeEEEEEeCCccCCce-eeEEEEecCH
Q psy9211 11 DHYHVGWYQSSD-VANFISLPLIESQFHYQISIEEAVVLIYDTQKTSRGF-LTLKAYRLTP 69 (226)
Q Consensus 11 D~~~VGwYqS~~-~G~f~s~~~Ietq~~yQ~~~~~~V~lV~Dp~~s~~G~-lslkAfRLs~ 69 (226)
+..+|||||||| .++|.|..|++++. .++++.||+.+. .|+ ..++|||+++
T Consensus 75 g~~ivG~yHSHP~~~~~PS~~D~~~~~-----~~~~~~lIvs~~---~~~~~~~~af~~~~ 127 (153)
T 2kcq_A 75 GLDVVGVYHSHPDHPARPSATDLEEAT-----FPGFTYVIVSVR---DGAPEALTAWALAP 127 (153)
T ss_dssp TCEEEEEEEECSSSSSSCCHHHHHTCC-----CTTSEEEEEEEE---TTEEEEEEEEEECT
T ss_pred CCeEEEEEeCCCCCCCCCCHHHHHhhh-----cCCCeEEEEECC---CCCccEEEEEEEeC
Confidence 468999999999 78999999997542 467888888654 466 5799999963
No 8
>2kks_A Uncharacterized protein; NESG, structural genomics, PSI-2, protein structure initiati northeast structural genomics consortium; NMR {Desulfitobacterium hafniense}
Probab=98.15 E-value=3.3e-06 Score=67.45 Aligned_cols=53 Identities=13% Similarity=0.011 Sum_probs=41.8
Q ss_pred CCCceeEEEEeec-CCCccCHHHHHHHHHHhHhcCCeEEEEEeCCccCCceeeEEEEecCH
Q psy9211 10 VDHYHVGWYQSSD-VANFISLPLIESQFHYQISIEEAVVLIYDTQKTSRGFLTLKAYRLTP 69 (226)
Q Consensus 10 ~D~~~VGwYqS~~-~G~f~s~~~Ietq~~yQ~~~~~~V~lV~Dp~~s~~G~lslkAfRLs~ 69 (226)
.+..+|||||||| .++|.|..|+.++. .++.+.+|+.+.. .+...++|||+..
T Consensus 72 ~g~~ivG~~HSHP~~~~~PS~~D~~~~~-----~~~~~~lIvs~~~--~~~~~~~af~~~~ 125 (146)
T 2kks_A 72 NGWVMLGNFHSHPATPARPSAEDKRLAF-----DPSLSYLIISLAE--PQKPVCKSFLIKK 125 (146)
T ss_dssp HTCEEEEEEEEESSSCSSCCHHHHTTCC-----SSSCEEEEEECSC--SSSCEEEEEEECS
T ss_pred CCCEEEEEEeCCCcCCCCCCHHHHHhhh-----cCCCeEEEEEccC--CCceEEEEEEEeC
Confidence 3457999999999 77999999998642 3678888887753 2468899999853
No 9
>2og4_A PRE-mRNA-splicing factor 8; isopeptidase, JAB1/MPN domain, protein-PR interaction, PRP8P, pseudoenzyme, spliceosome activation; 2.00A {Saccharomyces cerevisiae}
Probab=97.74 E-value=9.5e-05 Score=64.66 Aligned_cols=89 Identities=13% Similarity=0.190 Sum_probs=68.0
Q ss_pred CCceeEEEEeecCC-CccCHHHHHHHHHHhHh-cCCeEEEEEeCCccCCceeeEEEEecCHHHHHHhhcCCCCHHHHhhc
Q psy9211 11 DHYHVGWYQSSDVA-NFISLPLIESQFHYQIS-IEEAVVLIYDTQKTSRGFLTLKAYRLTPQAIQMYKEGEFTPEALRAI 88 (226)
Q Consensus 11 D~~~VGwYqS~~~G-~f~s~~~Ietq~~yQ~~-~~~~V~lV~Dp~~s~~G~lslkAfRLs~~~~~~~ke~~~t~~~l~~~ 88 (226)
|=..+||-|+++-. +|+++.++-|+.+||.. .+++|++|.-|. .|..++.|||||++=++-.++++-...+.- .
T Consensus 109 dLe~LGWIHTqptq~~fLSs~Dl~tH~~~~~~~~~eaIaIvcsft---pgs~sl~af~LT~~G~~Wg~~n~d~~~~~~-~ 184 (254)
T 2og4_A 109 GLELLGWIHTQTEELKFMAASEVATHSKLFADKKRDCIDISIFST---PGSVSLSAYNLTDEGYQWGEENKDIMNVLS-E 184 (254)
T ss_dssp TCEEEEEEEEESSCCSSCCHHHHHHHHHHHTTTCTTCEEEEEEEE---TTEEEEEEEEECHHHHHHHHTCCSCCSSCC-T
T ss_pred CCEecceEeeCCCCCcccCHHHHHHHHHHHHhcCCCeEEEEEecC---CCCceeEEEEcChhhhhhhhhcccccccCC-C
Confidence 44678999999955 99999999999999994 489999999665 899999999999998988877755422111 1
Q ss_pred CCCCCCceEEeeeEEe
Q psy9211 89 KVGFENLLLEVPVKIR 104 (226)
Q Consensus 89 ~lt~~~i~~EiPI~i~ 104 (226)
|-. .++++.+.+-+.
T Consensus 185 g~~-~~~~ek~qlllS 199 (254)
T 2og4_A 185 GFE-PTFSTHAQLLLS 199 (254)
T ss_dssp TCC-GGGEEEEEEEEE
T ss_pred CCC-ccccceeeEEee
Confidence 221 346777766543
No 10
>2p8r_A PRP8, PRE-mRNA-splicing factor PRP8; alpha-beta, translation; 2.10A {Caenorhabditis elegans} PDB: 2p87_A
Probab=97.72 E-value=0.00018 Score=63.56 Aligned_cols=89 Identities=17% Similarity=0.221 Sum_probs=68.1
Q ss_pred CCCceeEEEEeecCC-CccCHHHHHHHHHHhHh---c--CCeEEEEEeCCccCCceeeEEEEecCHHHHHHhhcCCCCHH
Q psy9211 10 VDHYHVGWYQSSDVA-NFISLPLIESQFHYQIS---I--EEAVVLIYDTQKTSRGFLTLKAYRLTPQAIQMYKEGEFTPE 83 (226)
Q Consensus 10 ~D~~~VGwYqS~~~G-~f~s~~~Ietq~~yQ~~---~--~~~V~lV~Dp~~s~~G~lslkAfRLs~~~~~~~ke~~~t~~ 83 (226)
-|=..+||-|+++-. +|+++.+|-|+.+||.. . +++|++|.-|. .|..++.|||||++=++-.++++-...
T Consensus 107 ~dLe~LGWIHTqp~e~~~LSs~Dl~tH~~~~~~~~~~~~~e~I~Ivcsft---pgs~sl~af~LT~~G~~Wg~~n~d~~~ 183 (273)
T 2p8r_A 107 RDFEPLGWMHTQPNELPQLSPQDVTTHAKLLTDNISWDGEKTVMITCSFT---PGSVSLTAYKLTPSGYEWGKANTDKGN 183 (273)
T ss_dssp TTSEEEEEEEEESSCCSSCCHHHHHHHHHHHHHCTTCCTTTCEEEEEEEE---TTEEEEEEEEECHHHHHHHHHCCCCSS
T ss_pred ccccccceEeeCCCCCCCcCHHHHHHHHHHHhcccccCCCceEEEEEecC---CCCceeEEEEcChHHhhhhhhcccccc
Confidence 455688999999955 99999999999999986 3 49999999664 899999999999988887776654432
Q ss_pred HHhhcCCCCCCceEEeeeEEe
Q psy9211 84 ALRAIKVGFENLLLEVPVKIR 104 (226)
Q Consensus 84 ~l~~~~lt~~~i~~EiPI~i~ 104 (226)
+ ..|. ..++++.+.+-+.
T Consensus 184 ~--~~Gf-~p~~~ek~qllLS 201 (273)
T 2p8r_A 184 N--PKGY-MPTHYEKVQMLLS 201 (273)
T ss_dssp C--CTTC-CGGGEEEEEEEEE
T ss_pred C--CCCC-Ccchhhheeeeee
Confidence 3 2333 2357777776553
No 11
>1oi0_A AF2198, hypothetical protein AF2198; proteasome, deubiquitination, archaea, hydrolase; 1.5A {Archaeoglobus fulgidus} SCOP: c.97.3.1 PDB: 1r5x_A
Probab=97.31 E-value=0.00052 Score=53.01 Aligned_cols=50 Identities=12% Similarity=-0.154 Sum_probs=39.2
Q ss_pred CCCceeEEEEeec-CCCccCHHHHHHHHHHhHhcCCeEEEEEeCCccCCceeeEEEEec
Q psy9211 10 VDHYHVGWYQSSD-VANFISLPLIESQFHYQISIEEAVVLIYDTQKTSRGFLTLKAYRL 67 (226)
Q Consensus 10 ~D~~~VGwYqS~~-~G~f~s~~~Ietq~~yQ~~~~~~V~lV~Dp~~s~~G~lslkAfRL 67 (226)
.+..+|||||||| .++|.|..++.++. ....+.+|+.+.. +.-+++||+.
T Consensus 61 ~~~~ivG~~HSHP~~~~~PS~~D~~~~~-----~~~~~~lIvs~~~---~~~~~~~f~~ 111 (124)
T 1oi0_A 61 IGMKVFGTVHSHPSPSCRPSEEDLSLFT-----RFGKYHIIVCYPY---DENSWKCYNR 111 (124)
T ss_dssp CCCEEEEEEEEESSSCCSCCHHHHHHHH-----HSCSEEEEEETTC---CTTCEEEEET
T ss_pred CCCEEEEEEEECcCCCCccCHHHHHhhh-----cCCCEEEEEEccC---CCceEEEEec
Confidence 4678999999999 77999999998754 3667888887642 3457888886
No 12
>3sbg_A PRE-mRNA-splicing factor 8; PRP8P, rnaseh domain, JAB1/MPN domain; 3.28A {Saccharomyces cerevisiae}
Probab=95.12 E-value=0.062 Score=51.18 Aligned_cols=90 Identities=13% Similarity=0.191 Sum_probs=64.3
Q ss_pred CCCceeEEEEeecCC-CccCHHHHHHHHHHhHhc-CCeEEEEEeCCccCCceeeEEEEecCHHHHHHhhcCCCCHHHHhh
Q psy9211 10 VDHYHVGWYQSSDVA-NFISLPLIESQFHYQISI-EEAVVLIYDTQKTSRGFLTLKAYRLTPQAIQMYKEGEFTPEALRA 87 (226)
Q Consensus 10 ~D~~~VGwYqS~~~G-~f~s~~~Ietq~~yQ~~~-~~~V~lV~Dp~~s~~G~lslkAfRLs~~~~~~~ke~~~t~~~l~~ 87 (226)
-|=...||-|+++-. +|+++.++-|+...-..+ +++|+++.- .+.|.++|.||+||++=.+-.++++-..... -
T Consensus 419 ~dLe~LGWIHTqp~et~fLSs~Dl~THakl~~~n~~~~I~itvs---ftPGS~SLsAy~LT~eGyeWG~~N~d~~~~~-p 494 (565)
T 3sbg_A 419 EGLELLGWIHTQTEELKFMAASEVATHSKLFADKKRDCIDISIF---STPGSVSLSAYNLTDEGYQWGEENKDIMNVL-S 494 (565)
T ss_dssp TTCEEEEEEEEESSCCSSCCHHHHHHHHHHHSSSCTTCEEEEEE---EETTEEEEEEEEECHHHHHHHHTTTTCCSSC-C
T ss_pred ccCEecceeeecCCcccccCHHHHHHHHHHHHhCCCCeEEEEEE---ecCCceEEEEEecCHhHHHHHhhcccccccC-C
Confidence 455789999999944 999999999999875554 477777663 3489999999999999988888765432100 1
Q ss_pred cCCCCCCceEEeeeEEe
Q psy9211 88 IKVGFENLLLEVPVKIR 104 (226)
Q Consensus 88 ~~lt~~~i~~EiPI~i~ 104 (226)
.|.. .++++.+.+-+.
T Consensus 495 ~g~~-~~~~~~~q~llS 510 (565)
T 3sbg_A 495 EGFE-PTFSTHAQLLLS 510 (565)
T ss_dssp TTCC-GGGEEECEEEEE
T ss_pred CCCC-ccccceeEEEEe
Confidence 1222 256777766554
No 13
>2rh2_A Dihydrofolate reductase type 2; folate metabolism, plasmid-encoded R67 DHFR, TMP-resistant DHFR, antibiotic resistance, methotrexate resistance; 0.96A {Escherichia coli} SCOP: b.34.4.1 PDB: 1vif_A* 1vie_A 2gqv_A 2rk1_A* 2rk2_A* 3sfm_A 2p4t_A*
Probab=28.30 E-value=18 Score=23.93 Aligned_cols=9 Identities=44% Similarity=1.040 Sum_probs=7.2
Q ss_pred ceeEEEEee
Q psy9211 13 YHVGWYQSS 21 (226)
Q Consensus 13 ~~VGwYqS~ 21 (226)
.+||||.+.
T Consensus 25 ~ivgwyct~ 33 (62)
T 2rh2_A 25 QIVGWYCTN 33 (62)
T ss_dssp EEEEEECCS
T ss_pred eEeEEEEcc
Confidence 479999865
No 14
>3nqi_A Putative lipoprotein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.87A {Bacteroides fragilis}
Probab=26.72 E-value=51 Score=28.32 Aligned_cols=38 Identities=21% Similarity=0.329 Sum_probs=26.6
Q ss_pred hHhcCCeEEEEEeCCccCCce----e---------------------eEEEEecCHHHHHHhhc
Q psy9211 39 QISIEEAVVLIYDTQKTSRGF----L---------------------TLKAYRLTPQAIQMYKE 77 (226)
Q Consensus 39 Q~~~~~~V~lV~Dp~~s~~G~----l---------------------slkAfRLs~~~~~~~ke 77 (226)
++....+++|+|||..-..|. | +.|||.|+.. |.+|++
T Consensus 143 eel~kHsF~L~Y~~~e~~sg~t~LkLyLrH~i~d~~~~~v~r~~~t~sykAYdIs~~-l~aFk~ 205 (246)
T 3nqi_A 143 NELAKHTFTLVCYTDDIKSGDTILKLYLRYKVEDEPAAIAERATRTSSFKAYEISQI-LREYTL 205 (246)
T ss_dssp HHHTTEEEEEEEEGGGCCTTCCEEEEEEEEEESSCHHHHHHCCEEEEEEEEEECHHH-HHHHHH
T ss_pred hhhhceeEEEEEcchhhcCCCceEEEEEEEecCCCccceeeeeeeeeeeEEecHHHH-HHHHHH
Confidence 344577999999986544442 2 4689999876 667764
Done!