RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy9211
(226 letters)
>4e0q_A COP9 signalosome complex subunit 6; MPN (MPR1P and PAD1P
N-terminal) domain, unknown function; 2.50A {Drosophila
melanogaster}
Length = 141
Score = 64.1 bits (156), Expect = 2e-13
Identities = 13/66 (19%), Positives = 25/66 (37%), Gaps = 3/66 (4%)
Query: 1 MMRRLRRVNVDHYHVGWYQSSDVANFISLPLIESQFHYQISIEEAVVLIYDTQKTSRGFL 60
++ ++V D +GWY + D + + Q E ++L + S L
Sbjct: 75 KEQQYKQVFSDLDFIGWYTTGDNPTADDIKI---QRQIAAINECPIMLQLNPLSRSVDHL 131
Query: 61 TLKAYR 66
LK +
Sbjct: 132 PLKLFE 137
>2o95_A 26S proteasome non-ATPase regulatory subunit 7; PSMD7, MOV34,
JAB1/MPN, metal-free dimer, UN function; HET: SO4 12P
ETE PG4 PGE; 1.95A {Homo sapiens} PDB: 2o96_A
Length = 187
Score = 53.1 bits (127), Expect = 5e-09
Identities = 22/103 (21%), Positives = 37/103 (35%), Gaps = 11/103 (10%)
Query: 1 MMRRLRRVNVDHYHVGWYQSSDVANFISLPLIESQFHYQISIEEAVVLIYDTQKTSRGFL 60
M ++VN VGWY + + I + +V++I D + G L
Sbjct: 79 MYGMFKKVNARERIVGWYHTG---PKLHKNDIAINELMKRYCPNSVLVIIDVKPKDLG-L 134
Query: 61 TLKAYRLTPQAIQ-------MYKEGEFTPEALRAIKVGFENLL 96
+AY + ++ A A +VG E+LL
Sbjct: 135 PTEAYISVEEVHDDGTPTSKTFEHVTSEIGAEEAEEVGVEHLL 177
>3rzv_A STAM-binding protein; ubiquitin hydrolase, endosome-associated
deubiquitinat enzyme, hydrolase; 1.67A {Homo sapiens}
PDB: 3rzu_A
Length = 211
Score = 48.9 bits (116), Expect = 2e-07
Identities = 11/68 (16%), Positives = 26/68 (38%), Gaps = 6/68 (8%)
Query: 11 DHYHVGWYQS-SDVANFISLPLIESQFHYQISIEEAVVLIYDTQKTSRGFLTLKAYRLTP 69
+GW + F+S + + YQ+ + E+V ++ + G ++LT
Sbjct: 114 GLITLGWIHTHPTQTAFLSSVDLHTHCSYQMMLPESVAIVCSPKFQETG-----FFKLTD 168
Query: 70 QAIQMYKE 77
++
Sbjct: 169 HGLEEISS 176
>2znr_A AMSH-like protease; metal binding protein, alternative splicing,
hydrolase, metal-binding, metalloprotease, UBL
conjugation pathway, zinc; 1.20A {Homo sapiens} PDB:
2znv_A
Length = 178
Score = 42.0 bits (98), Expect = 4e-05
Identities = 13/65 (20%), Positives = 26/65 (40%), Gaps = 6/65 (9%)
Query: 11 DHYHVGWYQS-SDVANFISLPLIESQFHYQISIEEAVVLIYDTQKTSRGFLTLKAYRLTP 69
D +GW + F+S + + YQ+ + EA+ ++ + G +RLT
Sbjct: 81 DLLTLGWIHTHPTQTAFLSSVDLHTHCSYQLMLPEAIAIVCSPKHKDTG-----IFRLTN 135
Query: 70 QAIQM 74
+
Sbjct: 136 AGMLE 140
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 42.7 bits (100), Expect = 6e-05
Identities = 45/234 (19%), Positives = 76/234 (32%), Gaps = 62/234 (26%)
Query: 27 ISLPLIE-SQF-HYQISIEEAVVLIYDT---QKTSRGFLTLKAYRLTPQAIQMYKEGE-F 80
IS PLI Q HY ++ A +L + + +G +T AI E F
Sbjct: 236 ISCPLIGVIQLAHYVVT---AKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESF 292
Query: 81 TPEALRAIKVGF---------------ENLLLEVPVKIRN---SP---LTNVLLSEVDGL 119
+AI V F +LE ++ SP ++N+ +V
Sbjct: 293 FVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDY 352
Query: 120 VS------PAEGNNFLDLGTAFQQQVV--------RQAQDKHRYQAKRMQENQARAAKDE 165
V+ PA + L + VV + +A +Q+R
Sbjct: 353 VNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAP-SGLDQSRI---- 407
Query: 166 PPLPEEDLNKI-----FRPIPVP---PRLSPMLMAAQVSAYADHISQFSSQSLA 211
P E K+ F P+ P L P +++S F+++ +
Sbjct: 408 -PFSER---KLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVS-FNAKDIQ 456
Score = 38.5 bits (89), Expect = 0.001
Identities = 20/127 (15%), Positives = 36/127 (28%), Gaps = 36/127 (28%)
Query: 18 YQSSDVANFISLPLIESQFHYQISIEEAVVLIYDTQKTSR-GFLTLKAYRLTPQAIQMYK 76
Y++S A + + A D GF L P + ++
Sbjct: 1636 YKTSKAAQDV--------W------NRA-----DNHFKDTYGFSILDIVINNPVNLTIH- 1675
Query: 77 EGEFTPEALRAIKVGFENLLLEVPVKIRNSPLTNVLLSEVDGLVS------PAEGNNFLD 130
F E + I+ + ++ E V T + E++ + L
Sbjct: 1676 ---FGGEKGKRIRENYSAMIFETIVD--GKLKTEKIFKEINEHSTSYTFRSEKG---LLS 1727
Query: 131 LGTAFQQ 137
T F Q
Sbjct: 1728 A-TQFTQ 1733
Score = 34.3 bits (78), Expect = 0.034
Identities = 18/101 (17%), Positives = 27/101 (26%), Gaps = 23/101 (22%)
Query: 40 ISIEEAVVLIYDTQKTSRGFLTLKAYRLTPQAIQMYKEGEFTPEALRAIKVGFENLLLEV 99
+SIE V +++ RG A Y P + F L+
Sbjct: 1777 MSIESLVEVVF-----YRGMTMQVAVPRDELGRSNYGMIAINPG---RVAASFSQEALQY 1828
Query: 100 PVKIRNSPLTNVLLSEVDGLVSPAEGNNFLDLGTAFQQQVV 140
V+ + LV N+ QQ V
Sbjct: 1829 VVE--------RVGKRTGWLVEIV---NYNVEN----QQYV 1854
Score = 31.9 bits (72), Expect = 0.20
Identities = 37/188 (19%), Positives = 59/188 (31%), Gaps = 46/188 (24%)
Query: 62 LKAYRLTPQAIQMYKEGEFT---PEAL--RA--IKVGFENLLLEVPVKI--RNSPLTNV- 111
+ AY P + + E P A A ++ F +L E + P T
Sbjct: 1 MDAYSTRPLTLS-HGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAE 59
Query: 112 LLSE----VDGLVSPAEGNNFLDLG----TAFQQQVVRQAQDKHRYQAKRMQENQARAAK 163
L+ + V LV P++ F + T F+ + D H AK +QEN K
Sbjct: 60 LVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEG-NDIHALAAKLLQENDTTLVK 118
Query: 164 DEPPLPEEDLNKIFR---------PIPVPPRLSPMLMAAQVSAYADHISQFSSQS----- 209
++ + P + + L A A ++ F Q
Sbjct: 119 T---------KELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDY 169
Query: 210 ---LAKLY 214
L LY
Sbjct: 170 FEELRDLY 177
Score = 31.6 bits (71), Expect = 0.23
Identities = 28/159 (17%), Positives = 46/159 (28%), Gaps = 64/159 (40%)
Query: 70 QAIQ---M----YKEGEFTPEALRAI----------KVGFENLLLEVPVKIRNSPLTNVL 112
Q Q M YK T +A + + GF +L++ + N+P
Sbjct: 1624 QGSQEQGMGMDLYK----TSKAAQDVWNRADNHFKDTYGFS--ILDI---VINNP----- 1669
Query: 113 LSEVDGLVSPAEGNNFLDLGTAFQQQVVRQAQDKHRYQAKRMQENQARAAKDEPPLPE-- 170
+ +G + +R+ Y A + K E E
Sbjct: 1670 -VNLTIHFGGEKG------------KRIRE-----NYSAMIFETIVDGKLKTEKIFKEIN 1711
Query: 171 EDLNK-IFRPIPVPPR--LS------PMLMAAQVSAYAD 200
E FR + LS P L + +A+ D
Sbjct: 1712 EHSTSYTFRS----EKGLLSATQFTQPALTLMEKAAFED 1746
>2p8r_A PRP8, PRE-mRNA-splicing factor PRP8; alpha-beta, translation; 2.10A
{Caenorhabditis elegans} PDB: 2p87_A
Length = 273
Score = 28.8 bits (64), Expect = 1.3
Identities = 11/47 (23%), Positives = 20/47 (42%), Gaps = 3/47 (6%)
Query: 37 HYQISIEEAVVLIYDTQKTSRGFLTLKAYRLTPQAIQMYKEGEFTPE 83
+ E+ V++ T + G ++L AY+LTP + K
Sbjct: 140 NISWDGEKTVMI---TCSFTPGSVSLTAYKLTPSGYEWGKANTDKGN 183
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl RED
beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
cerevisiae}
Length = 1688
Score = 29.1 bits (65), Expect = 1.5
Identities = 6/44 (13%), Positives = 19/44 (43%)
Query: 134 AFQQQVVRQAQDKHRYQAKRMQENQARAAKDEPPLPEEDLNKIF 177
+ +V + + +++ M N+ +K+ P +E ++
Sbjct: 1473 EYVAKVSAREKSAYKFFHNGMIYNKLFVSKEHAPYTDELEEDVY 1516
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 27.8 bits (61), Expect = 2.2
Identities = 9/34 (26%), Positives = 18/34 (52%), Gaps = 3/34 (8%)
Query: 138 QVVRQAQDKHRYQAKRMQENQARAAKDEPPLPEE 171
+ +R+ +++ Q KR+QE A + E E+
Sbjct: 85 ESIRKWREE---QRKRLQELDAASKVMEQEWREK 115
>3iot_A Maltose-binding protein, huntingtin fusion protein; HTT-EX1, HD,
sugar transport, transport, apoptosis, cytoplasm,
disease mutation; 3.50A {Escherichia coli k-12} PDB:
3io6_A 3io4_A 3ior_A 3iou_A 3iov_A 3iow_A
Length = 449
Score = 27.1 bits (60), Expect = 5.2
Identities = 14/95 (14%), Positives = 30/95 (31%), Gaps = 5/95 (5%)
Query: 106 SPLTNVLLSEVDGLVSPAEG----NNFLDLGTAFQQQVVRQAQDKHRYQAKRMQENQARA 161
+ +++ G + ++ + K Q ++ Q+ Q +
Sbjct: 341 YAVRTAVINAASGRQTVDAALAAAQTNAAAMATLEKLMKAFESLKSFQQQQQQQQQQQQQ 400
Query: 162 AKDEPPLPEEDLNKIFRPIPVPPRLSPMLMAAQVS 196
+ +PP P P P PP+ P+L
Sbjct: 401 QQQQPPPPPPPPPPPQLPQP-PPQAQPLLPQQSYQ 434
>1sfe_A ADA O6-methylguanine-DNA methyltransferase; enzyme, nucleic acid
binding DNA repair protein, DNA-binding protein; 2.10A
{Escherichia coli} SCOP: a.4.2.1 c.55.7.1
Length = 180
Score = 26.0 bits (58), Expect = 9.0
Identities = 10/12 (83%), Positives = 11/12 (91%), Gaps = 1/12 (8%)
Query: 129 LDL-GTAFQQQV 139
LD+ GTAFQQQV
Sbjct: 90 LDIRGTAFQQQV 101
>2a1x_A Phytanoyl-COA dioxygenase; beta jelly roll, double-stranded
beta-helix, structural GENO structural genomics
consortium, SGC, oxidoreductase; HET: AKG; 2.50A {Homo
sapiens} SCOP: b.82.2.9
Length = 308
Score = 26.4 bits (58), Expect = 9.5
Identities = 10/65 (15%), Positives = 25/65 (38%), Gaps = 7/65 (10%)
Query: 60 LTLKAYRLTPQAIQMYKE-------GEFTPEALRAIKVGFENLLLEVPVKIRNSPLTNVL 112
TL LT + + Y+E ++ + FE + + + + + +V
Sbjct: 16 YTLDNNVLTLEQRKFYEENGFLVIKNLVPDADIQRFRNEFEKICRKEVKPLGLTVMRDVT 75
Query: 113 LSEVD 117
+S+ +
Sbjct: 76 ISKSE 80
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.132 0.373
Gapped
Lambda K H
0.267 0.0608 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,429,847
Number of extensions: 198798
Number of successful extensions: 503
Number of sequences better than 10.0: 1
Number of HSP's gapped: 498
Number of HSP's successfully gapped: 21
Length of query: 226
Length of database: 6,701,793
Length adjustment: 90
Effective length of query: 136
Effective length of database: 4,188,903
Effective search space: 569690808
Effective search space used: 569690808
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.2 bits)