RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy9211
         (226 letters)



>d2d8da1 a.130.1.1 (A:3-82) Chorismate mutase domain of P-protein
           {Thermus thermophilus [TaxId: 274]}
          Length = 80

 Score = 27.2 bits (60), Expect = 0.55
 Identities = 12/42 (28%), Positives = 21/42 (50%), Gaps = 1/42 (2%)

Query: 140 VRQAQDKHRYQAKRMQENQAR-AAKDEPPLPEEDLNKIFRPI 180
           ++       Y  KR +E  A   A++  P P+E + K+F+ I
Sbjct: 34  LQTELGLPHYDPKREEEMLAYLTAENPGPFPDETIRKLFKEI 75


>d1k9xa_ d.92.1.5 (A:) Thermostable carboxypeptidase 1 {Archaeon
           Pyrococcus furiosus [TaxId: 2261]}
          Length = 497

 Score = 28.0 bits (62), Expect = 1.1
 Identities = 13/98 (13%), Positives = 29/98 (29%), Gaps = 2/98 (2%)

Query: 123 AEGNNFLDLGTAFQQQVVRQAQDKHRYQAKRMQENQARAAKDEPPLPEEDLNKIFRPIPV 182
           A+  +       +  +++  A+    Y     +   A     E  L   D+ K+F  +  
Sbjct: 120 AKAKDDFSKFEPWLDKIISLAKRAAEYLGYEEEPYDALLDLYEEGLRTRDVEKMFEVL-- 177

Query: 183 PPRLSPMLMAAQVSAYADHISQFSSQSLAKLYMMEAVK 220
             +L P+L                 +   + +M     
Sbjct: 178 EKKLKPLLDKILEEGKVPREHPLEKEKYEREWMERVNL 215


>d1c4ka1 c.23.1.4 (A:1-107) Ornithine decarboxylase N-terminal
           "wing" domain {Lactobacillus sp., strain 30a [TaxId:
           1591]}
          Length = 107

 Score = 25.1 bits (55), Expect = 3.9
 Identities = 8/41 (19%), Positives = 18/41 (43%)

Query: 161 AAKDEPPLPEEDLNKIFRPIPVPPRLSPMLMAAQVSAYADH 201
             KD   +  ++L KIF  I +  +    + A ++    ++
Sbjct: 61  VTKDAQAISADELKKIFHIIDLENKFDATVNAREIETAVNN 101


>d2g5fa1 d.161.1.1 (A:15-449) Salicylate synthase MbtI
           {Mycobacterium tuberculosis [TaxId: 1773]}
          Length = 435

 Score = 26.0 bits (56), Expect = 4.0
 Identities = 7/22 (31%), Positives = 14/22 (63%)

Query: 180 IPVPPRLSPMLMAAQVSAYADH 201
           IP+P  ++P  +AA+++A    
Sbjct: 4   IPMPAGVNPADLAAELAAVVTE 25


>d1gvea_ c.1.7.1 (A:) Aflatoxin aldehyde reductase (akr7a1) {Rat
           (Rattus norvegicus) [TaxId: 10116]}
          Length = 324

 Score = 25.8 bits (55), Expect = 4.8
 Identities = 5/35 (14%), Positives = 15/35 (42%), Gaps = 5/35 (14%)

Query: 152 KRMQENQARAAKDEPPLPEED---LNKIFRPIPVP 183
           +++++N   A  +E PL        ++ +  +   
Sbjct: 286 EQLEQN--LALVEEGPLEPAVVDAFDQAWNLVAHE 318


>d3eaua1 c.1.7.1 (A:36-361) Voltage-dependent K+ channel beta
           subunit {Rat (Rattus norvegicus) [TaxId: 10116]}
          Length = 326

 Score = 25.8 bits (55), Expect = 5.0
 Identities = 7/26 (26%), Positives = 14/26 (53%), Gaps = 1/26 (3%)

Query: 151 AKRMQENQARAAKDEPPLPEEDLNKI 176
           A+++ EN   A +  P L    +++I
Sbjct: 292 AEQLMEN-IGAIQVLPKLSSSIVHEI 316


>g3bzy.1 d.367.1.1 (A:246-262,B:263-345) Type III secretion proteins
           EscU {Escherichia coli [TaxId: 562]}
          Length = 100

 Score = 24.0 bits (52), Expect = 8.2
 Identities = 14/73 (19%), Positives = 23/73 (31%), Gaps = 19/73 (26%)

Query: 45  AVVLIYDTQKTSRGFLTLKAYRLTPQAIQMYKEGEFTPEALRAIKVGFENLLLEVPVKIR 104
           A+ L Y   +T    +                       AL+ IK+       ++PV I 
Sbjct: 22  AICLYYKLGETPLPLVIETGKDAK---------------ALQIIKLAELY---DIPV-IE 62

Query: 105 NSPLTNVLLSEVD 117
           + PL   L   + 
Sbjct: 63  DIPLARSLDKNIH 75


>d1irua_ d.153.1.4 (A:) Proteasome alpha subunit (non-catalytic)
           {Cow (Bos taurus) [TaxId: 9913]}
          Length = 244

 Score = 25.0 bits (54), Expect = 8.6
 Identities = 10/35 (28%), Positives = 17/35 (48%), Gaps = 6/35 (17%)

Query: 196 SAYADHISQFSSQSLAKL----YMMEAVKSHNLTS 226
           + +  HI+ FS +   +L    Y  +A+    LTS
Sbjct: 6   AGFDRHITIFSPEG--RLYQVEYAFKAINQGGLTS 38


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.132    0.373 

Gapped
Lambda     K      H
   0.267   0.0646    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 806,722
Number of extensions: 35678
Number of successful extensions: 112
Number of sequences better than 10.0: 1
Number of HSP's gapped: 112
Number of HSP's successfully gapped: 9
Length of query: 226
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 144
Effective length of database: 1,281,736
Effective search space: 184569984
Effective search space used: 184569984
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (23.6 bits)