BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9213
(378 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3GI9|C Chain C, Crystal Structure Of Apct Transporter Bound To 7f11
Monoclonal Fab Fragment
pdb|3GIA|A Chain A, Crystal Structure Of Apct Transporter
Length = 444
Score = 58.9 bits (141), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 53/188 (28%), Positives = 92/188 (48%), Gaps = 19/188 (10%)
Query: 11 SLLTAINCYNVKWVTRLQDVFTATKMLALGGIVIAGMWFLAMGNTENIAHPMQN-SNWDP 69
+ TA+N + K V R + K+L LG + AG+ + HP + P
Sbjct: 134 AFFTALNFFGSKAVGRAEFFIVLVKLLILGLFIFAGLITI---------HPSYVIPDLAP 184
Query: 70 GYVA-LSFYSGLF--SYSGWNYLNFVTEELKNPYKNLPKAICVSMPLSTIVYLLVNVAYF 126
V+ + F S +F SY G+ + +E ++NP KN+P+AI +S+ + VY+ V ++
Sbjct: 185 SAVSGMIFASAIFFLSYMGFGVITNASEHIENPKKNVPRAIFISILIVMFVYVGVAISAI 244
Query: 127 VVLSKEELLSSNTVAVTFGAKILPMLTWLMPLFVSC----STFGALNGAIFASSRLFFVG 182
L +EL+ ++ A+ AK P L L L +S S A+N I+ + + +
Sbjct: 245 GNLPIDELIKASENALAVAAK--PFLGNLGFLLISIGALFSISSAMNATIYGGANVAYSL 302
Query: 183 ARNGHLPK 190
A++G LP+
Sbjct: 303 AKDGELPE 310
>pdb|3GI8|C Chain C, Crystal Structure Of Apct K158a Transporter Bound To 7f11
Monoclonal Fab Fragment
Length = 444
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/188 (27%), Positives = 91/188 (48%), Gaps = 19/188 (10%)
Query: 11 SLLTAINCYNVKWVTRLQDVFTATKMLALGGIVIAGMWFLAMGNTENIAHPMQN-SNWDP 69
+ TA+N + K V R + +L LG + AG+ + HP + P
Sbjct: 134 AFFTALNFFGSKAVGRAEFFIVLVALLILGLFIFAGLITI---------HPSYVIPDLAP 184
Query: 70 GYVA-LSFYSGLF--SYSGWNYLNFVTEELKNPYKNLPKAICVSMPLSTIVYLLVNVAYF 126
V+ + F S +F SY G+ + +E ++NP KN+P+AI +S+ + VY+ V ++
Sbjct: 185 SAVSGMIFASAIFFLSYMGFGVITNASEHIENPKKNVPRAIFISILIVMFVYVGVAISAI 244
Query: 127 VVLSKEELLSSNTVAVTFGAKILPMLTWLMPLFVSC----STFGALNGAIFASSRLFFVG 182
L +EL+ ++ A+ AK P L L L +S S A+N I+ + + +
Sbjct: 245 GNLPIDELIKASENALAVAAK--PFLGNLGFLLISIGALFSISSAMNATIYGGANVAYSL 302
Query: 183 ARNGHLPK 190
A++G LP+
Sbjct: 303 AKDGELPE 310
>pdb|3NCY|A Chain A, X-Ray Crystal Structure Of An Arginine Agmatine Antiporter
(Adic) In Complex With A Fab Fragment
pdb|3NCY|B Chain B, X-Ray Crystal Structure Of An Arginine Agmatine Antiporter
(Adic) In Complex With A Fab Fragment
pdb|3NCY|C Chain C, X-Ray Crystal Structure Of An Arginine Agmatine Antiporter
(Adic) In Complex With A Fab Fragment
pdb|3NCY|D Chain D, X-Ray Crystal Structure Of An Arginine Agmatine Antiporter
(Adic) In Complex With A Fab Fragment
Length = 445
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 55/228 (24%), Positives = 91/228 (39%), Gaps = 22/228 (9%)
Query: 1 MEYTLFILLESLLTAINCYNVKWV------------TRLQDVFTATKMLALGGIVIAGMW 48
+ Y IL + L+ + C V W+ TR+Q V T ++ + GI + G W
Sbjct: 112 LSYFFPILKDPLVLTLTCVAVLWIFVLLNIVGPKMITRVQAVATVLALVPIVGIAVFG-W 170
Query: 49 FLAMGNTENIAHPMQNSNWDPGYVALSFYSGLFSYSGWNYLNFVTEELKNPYKNLPKAIC 108
F G T A + N G + + L+S+ G + +KNP +N+P A
Sbjct: 171 FWFKGETYMAAWNVSGMN-TFGAIQSTLNVTLWSFIGVESASVAAGVVKNPKRNVPIATI 229
Query: 109 VSMPLSTIVYLLVNVAYFVVLSKEELLSSNTVAVTFGAKILPMLTWLMPLFVS-CST--- 164
+ ++ + Y+L A ++ L S A FG L VS C+
Sbjct: 230 GGVLIAAVCYVLSTTAIMGMIPNAALRVS---ASPFGDAARMALGDTAGAIVSFCAAAGC 286
Query: 165 FGALNGAIFASSRLFFVGARNGHLPKAIALINVKRYTPCPSLVFLCII 212
G+L G + + A +G P A +N K TP L+ + ++
Sbjct: 287 LGSLGGWTLLAGQTAKAAADDGLFPPIFARVN-KAGTPVAGLLIVGVL 333
>pdb|3LRB|A Chain A, Structure Of E. Coli Adic
pdb|3LRB|B Chain B, Structure Of E. Coli Adic
pdb|3LRC|A Chain A, Structure Of E. Coli Adic (P1)
pdb|3LRC|B Chain B, Structure Of E. Coli Adic (P1)
pdb|3LRC|C Chain C, Structure Of E. Coli Adic (P1)
pdb|3LRC|D Chain D, Structure Of E. Coli Adic (P1)
Length = 445
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 56/228 (24%), Positives = 90/228 (39%), Gaps = 22/228 (9%)
Query: 1 MEYTLFILLESLLTAINCYNVKWV------------TRLQDVFTATKMLALGGIVIAGMW 48
+ Y IL + L+ I C V W+ TR+Q V T ++ + GI + G W
Sbjct: 112 LSYFFPILKDPLVLTITCVVVLWIFVLLNIVGPKMITRVQAVATVLALIPIVGIAVFG-W 170
Query: 49 FLAMGNTENIAHPMQNSNWDPGYVALSFYSGLFSYSGWNYLNFVTEELKNPYKNLPKAIC 108
F G T A + G + + L+S+ G + +KNP +N+P A
Sbjct: 171 FWFRGETYMAAWNVSGLG-TFGAIQSTLNVTLWSFIGVESASVAAGVVKNPKRNVPIATI 229
Query: 109 VSMPLSTIVYLLVNVAYFVVLSKEELLSSNTVAVTFGAKILPMLTWLMPLFVS-CST--- 164
+ ++ + Y+L A ++ L S A FG L VS C+
Sbjct: 230 GGVLIAAVCYVLSTTAIMGMIPNAALRVS---ASPFGDAARMALGDTAGAIVSFCAAAGC 286
Query: 165 FGALNGAIFASSRLFFVGARNGHLPKAIALINVKRYTPCPSLVFLCII 212
G+L G + + A +G P A +N K TP L+ + I+
Sbjct: 287 LGSLGGWTLLAGQTAKAAADDGLFPPIFARVN-KAGTPVAGLIIVGIL 333
>pdb|3OB6|A Chain A, Structure Of Adic(N101a) In The Open-To-Out Arg+ Bound
Conformation
pdb|3OB6|B Chain B, Structure Of Adic(N101a) In The Open-To-Out Arg+ Bound
Conformation
Length = 445
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 56/228 (24%), Positives = 90/228 (39%), Gaps = 22/228 (9%)
Query: 1 MEYTLFILLESLLTAINCYNVKWV------------TRLQDVFTATKMLALGGIVIAGMW 48
+ Y IL + L+ I C V W+ TR+Q V T ++ + GI + G W
Sbjct: 112 LSYFFPILKDPLVLTITCVVVLWIFVLLNIVGPKMITRVQAVATVLALIPIVGIAVFG-W 170
Query: 49 FLAMGNTENIAHPMQNSNWDPGYVALSFYSGLFSYSGWNYLNFVTEELKNPYKNLPKAIC 108
F G T A + G + + L+S+ G + +KNP +N+P A
Sbjct: 171 FWFRGETYMAAWNVSGLG-TFGAIQSTLNVTLWSFIGVESASVAAGVVKNPKRNVPIATI 229
Query: 109 VSMPLSTIVYLLVNVAYFVVLSKEELLSSNTVAVTFGAKILPMLTWLMPLFVS-CST--- 164
+ ++ + Y+L A ++ L S A FG L VS C+
Sbjct: 230 GGVLIAAVCYVLSTTAIMGMIPNAALRVS---ASPFGDAARMALGDTAGAIVSFCAAAGC 286
Query: 165 FGALNGAIFASSRLFFVGARNGHLPKAIALINVKRYTPCPSLVFLCII 212
G+L G + + A +G P A +N K TP L+ + I+
Sbjct: 287 LGSLGGWTLLAGQTAKAAADDGLFPPIFARVN-KAGTPVAGLIIVGIL 333
>pdb|3L1L|A Chain A, Structure Of Arg-Bound Escherichia Coli Adic
Length = 445
Score = 37.4 bits (85), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 50/201 (24%), Positives = 82/201 (40%), Gaps = 10/201 (4%)
Query: 16 INCYNVKWVTRLQDVFTATKMLALGGIVIAGMWFLAMGNTENIAHPMQNSNWDPGYVALS 75
+N K +TR+Q V T ++ + GI + G WF G T A + G + +
Sbjct: 139 LNIVGPKMITRVQAVATVLALIPIVGIAVFG-WFWFRGETYMAAWNVSGLG-TFGAIQST 196
Query: 76 FYSGLFSYSGWNYLNFVTEELKNPYKNLPKAICVSMPLSTIVYLLVNVAYFVVLSKEELL 135
L+S+ G + +KNP +N+P A + ++ + Y+L A ++ L
Sbjct: 197 LNVTLWSFIGVESASVAAGVVKNPKRNVPIATIGGVLIAAVCYVLSTTAIMGMIPNAALR 256
Query: 136 SSNTVAVTFGAKILPMLTWLMPLFVS-CST---FGALNGAIFASSRLFFVGARNGHLPKA 191
S A FG L VS C+ G+L G + + A +G P
Sbjct: 257 VS---ASPFGDAARMALGDTAGAIVSFCAAAGCLGSLGGWTLLAGQTAKAAADDGLFPPI 313
Query: 192 IALINVKRYTPCPSLVFLCII 212
A +N K TP L+ + I+
Sbjct: 314 FARVN-KAGTPVAGLIIVGIL 333
>pdb|3DH4|A Chain A, Crystal Structure Of SodiumSUGAR SYMPORTER WITH BOUND
GALACTOSE FROM Vibrio Parahaemolyticus
pdb|3DH4|B Chain B, Crystal Structure Of SodiumSUGAR SYMPORTER WITH BOUND
GALACTOSE FROM Vibrio Parahaemolyticus
pdb|3DH4|C Chain C, Crystal Structure Of SodiumSUGAR SYMPORTER WITH BOUND
GALACTOSE FROM Vibrio Parahaemolyticus
pdb|3DH4|D Chain D, Crystal Structure Of SodiumSUGAR SYMPORTER WITH BOUND
GALACTOSE FROM Vibrio Parahaemolyticus
Length = 530
Score = 33.1 bits (74), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 52/219 (23%), Positives = 84/219 (38%), Gaps = 31/219 (14%)
Query: 86 WNYLNFVTEE--LKNPYKNLPKAICVSMPLSTIVYLLV---NVAYFVVLSKEELLSS--- 137
W + ++ + K I + L IV LV +A +V+ S +L++S
Sbjct: 235 WGFNQYIIQRTLAAKSVSEAQKGIVFAAFLKLIVPFLVVLPGIAAYVITSDPQLMASLGD 294
Query: 138 ----NTVAVTFGAKILPMLTWLMPLFVSCSTFGALNGAIFAS--------SRLFFVGARN 185
N + K P LT +P+ V F AL AI +S + +F +
Sbjct: 295 IAATNLPSAANADKAYPWLTQFLPVGVKGVVFAALAAAIVSSLASMLNSTATIFTMDIYK 354
Query: 186 GHLPKAIA---LINVKRYTPCPSLVFLCIITLLLMCIDDVFALIN-YATFVESSFTLTSV 241
++ L+NV R +L+ C+I +L I F I Y V +
Sbjct: 355 EYISPDSGDHKLVNVGRTAAVVALIIACLIAPMLGGIGQAFQYIQEYTGLVSPGILAVFL 414
Query: 242 TGLLWLRLKRPDLKRPIKVSIILPITFFIIAAFLVTLPM 280
GL W K+ K I + ++ I F A FL +P+
Sbjct: 415 LGLFW---KKTTSKGAI-IGVVASIPF---ALFLKFMPL 446
>pdb|4DJI|A Chain A, Structure Of Glutamate-Gaba Antiporter Gadc
pdb|4DJI|B Chain B, Structure Of Glutamate-Gaba Antiporter Gadc
pdb|4DJK|A Chain A, Structure Of Glutamate-Gaba Antiporter Gadc
pdb|4DJK|B Chain B, Structure Of Glutamate-Gaba Antiporter Gadc
Length = 511
Score = 33.1 bits (74), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 49/197 (24%), Positives = 82/197 (41%), Gaps = 18/197 (9%)
Query: 76 FYSGLFSYSGWNYLNFVTEELKNPYKNLPKAICVSMPLSTIVYLLVNVAYFVVLSKEELL 135
F + + SY G E+ NP ++ P A+ + M + + + ++ +V+ E+
Sbjct: 207 FVAFILSYMGVEASATHVNEMSNPGRDYPLAMLLLMVAAICLSSVGGLSIAMVIPGNEIN 266
Query: 136 SSNTVAVTFG---AKILPMLTWLMPLFVSCSTFGALNGA---IFASSRLFFVGARNGHLP 189
S V TF + + P + W + + + G L I SR +V A+ LP
Sbjct: 267 LSAGVMQTFTVLMSHVAPEIEWTVRVISALLLLGVLAEIASWIVGPSRGMYVTAQKNLLP 326
Query: 190 KAIALINVKRYTPCPSLVFLCIITLLLMCIDDVFALINYATFVESSFTLTSV-------- 241
A A +N K P ++ +IT + + I N +F+ + LT V
Sbjct: 327 AAFAKMN-KNGVPVTLVISQLVITSIALIILTNTGGGNNMSFL-IALALTVVIYLCAYFM 384
Query: 242 --TGLLWLRLKRPDLKR 256
G + L LK PDLKR
Sbjct: 385 LFIGYIVLVLKHPDLKR 401
>pdb|4EW7|A Chain A, The Crystal Structure Of Conjugative Transfer Pas_like
Domain From Salmonella Enterica Subsp. Enterica Serovar
Typhimurium
Length = 127
Score = 32.0 bits (71), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 40/88 (45%), Gaps = 10/88 (11%)
Query: 96 LKNPYKNLPKAICVSMPLSTIVYLLVNVAYFVVLSKEELLSSNTVAVTFGAKILPMLTWL 155
+++ YKN P +CV I+Y N A+ + SKE+ S +G ++ +L
Sbjct: 22 IQDIYKNSPVPVCVRNQSRKIIY--ANGAFIELFSKEDQPLSGDSYNRYGVEV-----FL 74
Query: 156 MPLFVSCSTFGALNGAIFASSRLFFVGA 183
L + C + G +GA F R F G
Sbjct: 75 SSLELECQSLG--HGAAFC-RRFNFHGE 99
>pdb|3R43|A Chain A, Akr1c3 Complexed With Mefenamic Acid
pdb|3R58|A Chain A, Akr1c3 Complex With Naproxen
pdb|3R6I|A Chain A, Akr1c3 Complex With Meclofenamic Acid
pdb|3R7M|A Chain A, Akr1c3 Complex With Sulindac
pdb|3R8G|A Chain A, Akr1c3 Complex With Ibuprofen
pdb|3R8H|A Chain A, Akr1c3 Complex With Zomepirac
pdb|3R94|A Chain A, Akr1c3 Complex With Flurbiprofen
pdb|3UFY|A Chain A, Akr1c3 Complex With R-Naproxen
pdb|3UG8|A Chain A, Akr1c3 Complex With Indomethacin At Ph 7.5
pdb|3UGR|A Chain A, Akr1c3 Complex With Indomethacin At Ph 6.8
pdb|4FA3|A Chain A, Crystal Structure Of Human 17beta-Hydroxysteroid
Dehydrogenase Type 5 In Complex With
(R)-1-(Naphthalen-2-Ylsulfonyl)piperidine-3- Carboxylic
Acid (86)
pdb|4FAL|A Chain A, Crystal Structure Of Human 17beta-Hydroxysteroid
Dehydrogenase Type 5 In Complex With
3-((3,4-Dihydroisoquinolin-2(1h)-Yl)sulfonyl)-N-
Methylbenzamide (80)
pdb|4FAM|A Chain A, Crystal Structure Of Human 17beta-Hydroxysteroid
Dehydrogenase Type 5 In Complex With
3-((3,4-Dihydroisoquinolin-2(1h)-Yl)sulfonyl)benzoic
Acid (17)
pdb|4FAM|B Chain B, Crystal Structure Of Human 17beta-Hydroxysteroid
Dehydrogenase Type 5 In Complex With
3-((3,4-Dihydroisoquinolin-2(1h)-Yl)sulfonyl)benzoic
Acid (17)
Length = 331
Score = 29.3 bits (64), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 21/45 (46%)
Query: 242 TGLLWLRLKRPDLKRPIKVSIILPITFFIIAAFLVTLPMYVKPWE 286
T LW RP+L RP + + + +L+ PM +KP E
Sbjct: 82 TSKLWSTFHRPELVRPALENSLKKAQLDYVDLYLIHSPMSLKPGE 126
>pdb|1S1P|A Chain A, Crystal Structures Of Prostaglandin D2 11-Ketoreductase
(Akr1c3) In Complex With The Non-Steroidal Anti-
Inflammatory Drugs Flufenamic Acid And Indomethacin
pdb|1S1R|A Chain A, Crystal Structures Of Prostaglandin D2 11-Ketoreductase
(Akr1c3) In Complex With The Non-Steroidal Anti-
Inflammatory Drugs Flufenamic Acid And Indomethacin
pdb|1S2A|A Chain A, Crystal Structures Of Prostaglandin D2 11-Ketoreductase In
Complex With The Non-Steroidal Anti-Inflammatory Drugs
Flufenamic Acid And Indomethacin
pdb|1S2C|A Chain A, Crystal Structures Of Prostaglandin D2 11-Ketoreductase In
Complex With The Non-Steroidal Anti-Inflammatory Drugs
Flufenamic Acid And Indomethacin
Length = 331
Score = 29.3 bits (64), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 21/45 (46%)
Query: 242 TGLLWLRLKRPDLKRPIKVSIILPITFFIIAAFLVTLPMYVKPWE 286
T LW RP+L RP + + + +L+ PM +KP E
Sbjct: 82 TSKLWSTFHRPELVRPALENSLKKAQLDYVDLYLIHSPMSLKPGE 126
>pdb|1RY0|A Chain A, Structure Of Prostaglandin F Synthase With Prostaglandin
D2
pdb|1RY0|B Chain B, Structure Of Prostaglandin F Synthase With Prostaglandin
D2
pdb|1RY8|A Chain A, Prostaglandin F Synthase Complexed With Nadph And Rutin
pdb|1RY8|B Chain B, Prostaglandin F Synthase Complexed With Nadph And Rutin
pdb|1XF0|A Chain A, Crystal Structure Of Human 17beta-Hydroxysteroid
Dehydrogenase Type 5 (Akr1c3) Complexed With Delta4-
Androstene-3,17-Dione And Nadp
pdb|2F38|A Chain A, Crystal Structure Of Prostaglandin F Synathase Containing
Bimatoprost
pdb|1ZQ5|A Chain A, Crystal Structure Of Human Androgenic
17beta-Hydroxysteroid Dehydrogenase Type 5 In Complexed
With A Potent Inhibitor Em1404
pdb|2FGB|A Chain A, Crystal Structure Of Human 17bet A-Hydroxysteroid
Dehydrogenase Type 5 In Complexes With Peg And Nadp
pdb|4DBS|A Chain A, Crystal Structure Of Human 17beta-Hydroxysteroid
Dehydrogenase Type 5 (Akr1c3) In Complex With Nadp+ And
3'-[(4-Nitronaphthalen-1-Yl) Amino]benzoic Acid
pdb|4DBS|B Chain B, Crystal Structure Of Human 17beta-Hydroxysteroid
Dehydrogenase Type 5 (Akr1c3) In Complex With Nadp+ And
3'-[(4-Nitronaphthalen-1-Yl) Amino]benzoic Acid
pdb|4DBU|A Chain A, Crystal Structure Of Human 17beta-Hydroxysteroid
Dehydrogenase Type 5 (Akr1c3) In Complex With Nadp+ And
3-((4 -(Trifluoromethyl)phenyl) Amino)benzoic Acid
pdb|4DBU|B Chain B, Crystal Structure Of Human 17beta-Hydroxysteroid
Dehydrogenase Type 5 (Akr1c3) In Complex With Nadp+ And
3-((4 -(Trifluoromethyl)phenyl) Amino)benzoic Acid
Length = 323
Score = 28.9 bits (63), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 21/45 (46%)
Query: 242 TGLLWLRLKRPDLKRPIKVSIILPITFFIIAAFLVTLPMYVKPWE 286
T LW RP+L RP + + + +L+ PM +KP E
Sbjct: 82 TSKLWSTFHRPELVRPALENSLKKAQLDYVDLYLIHSPMSLKPGE 126
>pdb|3UWE|A Chain A, Akr1c3 Complexed With 3-Phenoxybenzoic Acid
Length = 331
Score = 28.9 bits (63), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 21/45 (46%)
Query: 242 TGLLWLRLKRPDLKRPIKVSIILPITFFIIAAFLVTLPMYVKPWE 286
T LW RP+L RP + + + +L+ PM +KP E
Sbjct: 82 TSKLWSTFHRPELVRPALENSLKKAQLDYVDLYLIHSPMSLKPGE 126
>pdb|3C3U|A Chain A, Crystal Structure Of Akr1c1 In Complex With Nadp And 3,5-
Dichlorosalicylic Acid
pdb|3NTY|A Chain A, Crystal Structure Of Akr1c1 In Complex With Nadp And
5-Phenyl,3- Chlorosalicylic Acid
Length = 323
Score = 28.9 bits (63), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 21/45 (46%)
Query: 242 TGLLWLRLKRPDLKRPIKVSIILPITFFIIAAFLVTLPMYVKPWE 286
T LW RP+L RP + + + +L+ P+ VKP E
Sbjct: 82 TSKLWCNSHRPELVRPALERSLKNLQLDYVDLYLIHFPVSVKPGE 126
>pdb|1MRQ|A Chain A, Crystal Structure Of Human 20alpha-hsd In Ternary Complex
With Nadp And 20alpha-hydroxy-progesterone
Length = 323
Score = 28.9 bits (63), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 21/45 (46%)
Query: 242 TGLLWLRLKRPDLKRPIKVSIILPITFFIIAAFLVTLPMYVKPWE 286
T LW RP+L RP + + + +L+ P+ VKP E
Sbjct: 82 TSKLWCNSHRPELVRPALERSLKNLQLDYVDLYLIHFPVSVKPGE 126
>pdb|3GUG|A Chain A, Crystal Structure Of Akr1c1 L308v Mutant In Complex With
Nadp And 3,5-Dichlorosalicylic Acid
Length = 323
Score = 28.9 bits (63), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 21/45 (46%)
Query: 242 TGLLWLRLKRPDLKRPIKVSIILPITFFIIAAFLVTLPMYVKPWE 286
T LW RP+L RP + + + +L+ P+ VKP E
Sbjct: 82 TSKLWCNSHRPELVRPALERSLKNLQLDYVDLYLIHFPVSVKPGE 126
>pdb|1XJB|A Chain A, Crystal Structure Of Human Type 3 3alpha-Hydroxysteroid
Dehydrogenase In Complex With Nadp(H), Citrate And
Acetate Molecules
pdb|1XJB|B Chain B, Crystal Structure Of Human Type 3 3alpha-Hydroxysteroid
Dehydrogenase In Complex With Nadp(H), Citrate And
Acetate Molecules
Length = 325
Score = 28.5 bits (62), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 21/45 (46%)
Query: 242 TGLLWLRLKRPDLKRPIKVSIILPITFFIIAAFLVTLPMYVKPWE 286
T LW RP+L RP + + + +L+ P+ VKP E
Sbjct: 84 TSKLWSNSHRPELVRPALERSLKNLQLDYVDLYLIHFPVSVKPGE 128
>pdb|1IHI|A Chain A, Crystal Structure Of Human Type Iii 3-Alpha-Hydroxysteroid
DehydrogenaseBILE ACID BINDING PROTEIN (AKR1C2)
COMPLEXED With Nadp+ And Ursodeoxycholate
pdb|1IHI|B Chain B, Crystal Structure Of Human Type Iii 3-Alpha-Hydroxysteroid
DehydrogenaseBILE ACID BINDING PROTEIN (AKR1C2)
COMPLEXED With Nadp+ And Ursodeoxycholate
pdb|2HDJ|A Chain A, Crystal Structure Of Human Type 3 3alpha-Hydroxysteroid
Dehydrogenase In Complex With Nadp(H)
pdb|2HDJ|B Chain B, Crystal Structure Of Human Type 3 3alpha-Hydroxysteroid
Dehydrogenase In Complex With Nadp(H)
Length = 323
Score = 28.5 bits (62), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 21/45 (46%)
Query: 242 TGLLWLRLKRPDLKRPIKVSIILPITFFIIAAFLVTLPMYVKPWE 286
T LW RP+L RP + + + +L+ P+ VKP E
Sbjct: 82 TSKLWSNSHRPELVRPALERSLKNLQLDYVDLYLIHFPVSVKPGE 126
>pdb|2IPJ|A Chain A, Crystal Structure Of H3alpha-Hydroxysteroid Dehydrogenase
Type 3 Mutant Y24a In Complex With Nadp+ And
Epi-Testosterone
pdb|2IPJ|B Chain B, Crystal Structure Of H3alpha-Hydroxysteroid Dehydrogenase
Type 3 Mutant Y24a In Complex With Nadp+ And
Epi-Testosterone
Length = 321
Score = 28.5 bits (62), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 21/45 (46%)
Query: 242 TGLLWLRLKRPDLKRPIKVSIILPITFFIIAAFLVTLPMYVKPWE 286
T LW RP+L RP + + + +L+ P+ VKP E
Sbjct: 80 TSKLWSNSHRPELVRPALERSLKNLQLDYVDLYLIHFPVSVKPGE 124
>pdb|1J96|A Chain A, Human 3alpha-Hsd Type 3 In Ternary Complex With Nadp And
Testosterone
pdb|1J96|B Chain B, Human 3alpha-Hsd Type 3 In Ternary Complex With Nadp And
Testosterone
Length = 323
Score = 28.5 bits (62), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 21/45 (46%)
Query: 242 TGLLWLRLKRPDLKRPIKVSIILPITFFIIAAFLVTLPMYVKPWE 286
T LW RP+L RP + + + +L+ P+ VKP E
Sbjct: 82 TSKLWSNSHRPELVRPALERSLKNLQLDYVDLYLIHFPVSVKPGE 126
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.329 0.142 0.449
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,497,715
Number of Sequences: 62578
Number of extensions: 408671
Number of successful extensions: 1015
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 993
Number of HSP's gapped (non-prelim): 22
length of query: 378
length of database: 14,973,337
effective HSP length: 100
effective length of query: 278
effective length of database: 8,715,537
effective search space: 2422919286
effective search space used: 2422919286
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 52 (24.6 bits)